Query 044441
Match_columns 333
No_of_seqs 159 out of 1606
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:20:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02670 transferase, transfer 100.0 1E-51 2.2E-56 391.0 31.1 328 3-333 97-448 (472)
2 PLN02764 glycosyltransferase f 100.0 8.4E-51 1.8E-55 382.0 30.7 324 3-333 95-428 (453)
3 PLN02992 coniferyl-alcohol glu 100.0 1.1E-50 2.4E-55 384.3 31.4 324 4-332 90-445 (481)
4 PLN02410 UDP-glucoronosyl/UDP- 100.0 2E-50 4.2E-55 381.9 30.6 319 4-332 87-428 (451)
5 PLN02208 glycosyltransferase f 100.0 2.2E-50 4.9E-55 380.6 30.6 320 3-332 94-421 (442)
6 PLN03004 UDP-glycosyltransfera 100.0 1.6E-50 3.5E-55 381.3 29.5 322 4-332 96-439 (451)
7 PLN00414 glycosyltransferase f 100.0 4.5E-50 9.7E-55 379.0 30.8 320 3-332 94-422 (446)
8 PLN03015 UDP-glucosyl transfer 100.0 1.3E-49 2.9E-54 375.0 30.5 326 3-332 92-446 (470)
9 PLN02173 UDP-glucosyl transfer 100.0 2.7E-49 6E-54 372.7 31.3 316 3-332 86-426 (449)
10 PLN02207 UDP-glycosyltransfera 100.0 3.3E-49 7.2E-54 373.5 30.3 319 5-332 99-443 (468)
11 PLN00164 glucosyltransferase; 100.0 9E-49 2E-53 374.0 30.8 327 3-332 95-451 (480)
12 PLN02555 limonoid glucosyltran 100.0 5.8E-49 1.2E-53 373.4 28.8 323 4-332 99-447 (480)
13 PLN02210 UDP-glucosyl transfer 100.0 1.6E-48 3.4E-53 370.1 30.7 317 4-332 91-433 (456)
14 PLN02863 UDP-glucoronosyl/UDP- 100.0 9.5E-49 2.1E-53 372.9 29.1 322 4-332 100-449 (477)
15 PLN02534 UDP-glycosyltransfera 100.0 1.3E-48 2.9E-53 371.5 28.8 325 4-332 105-464 (491)
16 PLN03007 UDP-glucosyltransfera 100.0 3.3E-48 7.2E-53 371.6 29.7 324 4-332 110-458 (482)
17 PLN02152 indole-3-acetate beta 100.0 5.6E-48 1.2E-52 364.4 28.6 319 4-332 89-434 (455)
18 PLN02554 UDP-glycosyltransfera 100.0 9.8E-48 2.1E-52 368.0 27.7 308 18-332 114-456 (481)
19 PLN02167 UDP-glycosyltransfera 100.0 1.8E-47 3.8E-52 365.7 28.9 309 17-332 119-450 (475)
20 PLN02562 UDP-glycosyltransfera 100.0 6.8E-47 1.5E-51 358.6 30.0 310 4-332 87-428 (448)
21 PLN02448 UDP-glycosyltransfera 100.0 1.4E-45 3E-50 351.8 29.6 312 4-332 94-435 (459)
22 PHA03392 egt ecdysteroid UDP-g 100.0 7.2E-45 1.6E-49 349.4 25.2 296 5-333 123-448 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 5.4E-45 1.2E-49 353.7 4.5 295 7-333 110-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 3.8E-35 8.3E-40 276.3 21.3 282 6-332 82-374 (392)
25 KOG1192 UDP-glucuronosyl and U 100.0 3.9E-32 8.4E-37 263.5 21.6 206 105-332 225-437 (496)
26 cd03784 GT1_Gtf_like This fami 100.0 6.1E-32 1.3E-36 255.2 18.6 282 5-331 93-385 (401)
27 COG1819 Glycosyl transferases, 100.0 6.6E-30 1.4E-34 239.7 16.9 175 127-333 210-384 (406)
28 PRK12446 undecaprenyldiphospho 99.9 3.3E-20 7.1E-25 171.8 21.9 243 8-327 83-336 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.8 4.6E-20 9.9E-25 168.9 16.0 228 5-311 83-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.8 1.9E-18 4.2E-23 158.7 19.8 248 5-327 80-338 (357)
31 TIGR00661 MJ1255 conserved hyp 99.8 2.7E-17 5.9E-22 150.8 19.1 122 161-313 188-313 (321)
32 PRK13608 diacylglycerol glucos 99.6 2.1E-14 4.5E-19 135.3 19.5 152 156-328 197-353 (391)
33 cd03785 GT1_MurG MurG is an N- 99.6 9.5E-14 2.1E-18 128.6 22.9 249 7-326 80-337 (350)
34 PRK13609 diacylglycerol glucos 99.6 1.1E-13 2.4E-18 129.9 20.8 238 5-314 93-338 (380)
35 PRK00726 murG undecaprenyldiph 99.6 1.7E-13 3.7E-18 127.5 21.5 243 7-326 82-333 (357)
36 PF04101 Glyco_tran_28_C: Glyc 99.6 2.3E-16 5E-21 130.9 -0.3 136 163-314 1-144 (167)
37 PLN02605 monogalactosyldiacylg 99.6 2.2E-12 4.8E-17 121.2 24.5 178 130-327 173-362 (382)
38 TIGR00215 lpxB lipid-A-disacch 99.5 2.2E-12 4.7E-17 121.2 16.1 264 5-331 78-369 (385)
39 TIGR01133 murG undecaprenyldip 99.4 4.4E-11 9.6E-16 110.6 21.6 75 234-314 244-321 (348)
40 COG4671 Predicted glycosyl tra 99.3 1.2E-10 2.7E-15 103.4 17.1 185 105-313 168-364 (400)
41 TIGR03492 conserved hypothetic 99.3 3.9E-10 8.5E-15 106.2 20.9 259 9-314 84-364 (396)
42 TIGR03590 PseG pseudaminic aci 99.3 1.5E-10 3.2E-15 104.0 16.5 105 162-280 171-278 (279)
43 PRK00025 lpxB lipid-A-disaccha 99.3 1.9E-10 4.2E-15 107.8 17.7 244 5-314 74-341 (380)
44 cd03814 GT1_like_2 This family 99.0 1.8E-07 4E-12 86.0 25.0 256 6-326 73-345 (364)
45 PRK05749 3-deoxy-D-manno-octul 99.0 1.9E-07 4.2E-12 89.0 23.0 83 236-328 315-403 (425)
46 PLN02871 UDP-sulfoquinovose:DA 99.0 4.1E-07 8.9E-12 87.8 25.0 140 163-328 264-415 (465)
47 PRK14089 ipid-A-disaccharide s 98.9 1.6E-08 3.6E-13 92.9 13.5 175 129-331 143-332 (347)
48 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 9.2E-08 2E-12 89.0 17.3 133 160-314 197-337 (363)
49 TIGR00236 wecB UDP-N-acetylglu 98.8 1.6E-07 3.5E-12 87.7 16.6 77 223-313 254-333 (365)
50 PF02684 LpxB: Lipid-A-disacch 98.8 4E-07 8.8E-12 84.3 17.8 249 5-314 71-340 (373)
51 cd05844 GT1_like_7 Glycosyltra 98.8 1.6E-06 3.4E-11 80.5 22.1 93 223-327 244-350 (367)
52 COG1519 KdtA 3-deoxy-D-manno-o 98.8 4.7E-06 1E-10 76.8 23.0 264 5-327 112-400 (419)
53 PRK01021 lpxB lipid-A-disaccha 98.7 1.2E-06 2.5E-11 85.0 19.1 267 5-332 299-590 (608)
54 cd03817 GT1_UGDG_like This fam 98.7 6.8E-06 1.5E-10 75.5 23.1 96 222-330 257-360 (374)
55 cd03823 GT1_ExpE7_like This fa 98.7 7E-06 1.5E-10 75.2 22.4 131 161-314 190-329 (359)
56 cd03798 GT1_wlbH_like This fam 98.7 2.1E-05 4.6E-10 71.9 24.5 248 5-314 80-344 (377)
57 cd03800 GT1_Sucrose_synthase T 98.6 1.5E-05 3.1E-10 74.8 23.3 93 223-327 282-382 (398)
58 cd03801 GT1_YqgM_like This fam 98.6 1.3E-05 2.8E-10 73.1 22.1 250 6-314 75-341 (374)
59 cd03820 GT1_amsD_like This fam 98.6 2E-05 4.4E-10 71.4 22.4 254 5-329 72-335 (348)
60 cd03822 GT1_ecORF704_like This 98.6 2.4E-05 5.1E-10 72.0 23.0 94 223-329 246-350 (366)
61 cd03819 GT1_WavL_like This fam 98.6 4.7E-05 1E-09 70.1 24.7 151 162-329 185-347 (355)
62 cd03811 GT1_WabH_like This fam 98.6 2.3E-05 5.1E-10 71.0 22.0 79 223-313 245-331 (353)
63 KOG3349 Predicted glycosyltran 98.6 3.3E-07 7.1E-12 71.9 8.1 119 162-291 4-133 (170)
64 cd03794 GT1_wbuB_like This fam 98.5 3.6E-05 7.8E-10 70.9 23.0 146 161-328 219-380 (394)
65 cd03808 GT1_cap1E_like This fa 98.5 3.7E-05 8.1E-10 70.0 22.8 148 161-327 187-343 (359)
66 cd03799 GT1_amsK_like This is 98.5 4.2E-05 9.2E-10 70.3 22.5 93 223-327 235-341 (355)
67 cd03795 GT1_like_4 This family 98.5 2.9E-05 6.4E-10 71.4 20.9 144 163-328 192-347 (357)
68 cd04962 GT1_like_5 This family 98.5 6.1E-05 1.3E-09 69.9 22.9 93 223-327 252-350 (371)
69 PRK09922 UDP-D-galactose:(gluc 98.4 6.4E-05 1.4E-09 70.0 19.9 146 163-329 181-342 (359)
70 PRK15179 Vi polysaccharide bio 98.4 0.00016 3.6E-09 72.5 23.6 96 223-328 573-674 (694)
71 TIGR03449 mycothiol_MshA UDP-N 98.4 0.00025 5.3E-09 67.0 23.8 94 223-328 282-383 (405)
72 cd03821 GT1_Bme6_like This fam 98.3 0.00019 4E-09 65.9 21.8 92 222-327 260-359 (375)
73 PF02350 Epimerase_2: UDP-N-ac 98.3 9.3E-06 2E-10 75.2 12.9 245 4-313 55-317 (346)
74 PRK10307 putative glycosyl tra 98.3 0.00086 1.9E-08 63.6 26.7 96 223-328 283-388 (412)
75 PF04007 DUF354: Protein of un 98.3 8.9E-05 1.9E-09 68.0 19.0 137 149-313 168-309 (335)
76 cd04949 GT1_gtfA_like This fam 98.3 6.1E-05 1.3E-09 70.2 18.5 99 223-330 260-362 (372)
77 cd03818 GT1_ExpC_like This fam 98.3 0.00016 3.4E-09 68.3 21.2 96 223-328 280-381 (396)
78 cd03816 GT1_ALG1_like This fam 98.3 0.00053 1.2E-08 65.2 24.6 91 224-328 294-399 (415)
79 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 0.00018 3.9E-09 67.2 20.8 243 4-313 81-338 (365)
80 cd03807 GT1_WbnK_like This fam 98.3 0.00036 7.8E-09 63.7 22.4 78 223-314 250-332 (365)
81 COG3980 spsG Spore coat polysa 98.3 3.4E-05 7.4E-10 67.3 14.0 141 163-325 160-301 (318)
82 cd03804 GT1_wbaZ_like This fam 98.3 3.2E-05 7E-10 71.5 15.2 135 164-325 197-339 (351)
83 COG0763 LpxB Lipid A disacchar 98.2 8.1E-05 1.7E-09 68.1 15.9 262 7-332 76-363 (381)
84 TIGR03087 stp1 sugar transfera 98.2 0.00038 8.2E-09 65.8 21.0 93 222-328 278-377 (397)
85 cd03809 GT1_mtfB_like This fam 98.2 8.7E-05 1.9E-09 68.2 15.6 93 222-328 251-351 (365)
86 COG5017 Uncharacterized conser 98.1 2.7E-05 5.9E-10 60.2 9.5 127 164-313 2-141 (161)
87 TIGR02149 glgA_Coryne glycogen 98.1 0.00071 1.5E-08 63.3 21.2 96 225-326 261-365 (388)
88 TIGR03088 stp2 sugar transfera 98.1 0.00043 9.4E-09 64.6 19.5 92 224-327 255-352 (374)
89 PRK15427 colanic acid biosynth 98.1 0.00049 1.1E-08 65.3 19.9 93 223-327 278-385 (406)
90 cd03812 GT1_CapH_like This fam 98.0 0.0015 3.3E-08 60.1 21.6 131 162-314 192-331 (358)
91 cd04951 GT1_WbdM_like This fam 98.0 0.0012 2.5E-08 60.8 20.8 77 223-313 244-325 (360)
92 TIGR02472 sucr_P_syn_N sucrose 98.0 0.001 2.2E-08 63.8 20.8 94 223-326 316-419 (439)
93 cd03792 GT1_Trehalose_phosphor 98.0 0.0017 3.7E-08 60.7 21.4 91 223-327 251-351 (372)
94 TIGR02918 accessory Sec system 98.0 0.0014 3.1E-08 63.7 20.4 101 223-330 375-483 (500)
95 PLN02275 transferase, transfer 98.0 0.0032 7E-08 58.9 22.1 75 224-312 286-371 (371)
96 cd03805 GT1_ALG2_like This fam 97.9 0.0023 4.9E-08 60.0 20.7 92 223-327 279-378 (392)
97 cd03796 GT1_PIG-A_like This fa 97.9 0.0016 3.5E-08 61.4 19.8 78 223-314 249-333 (398)
98 cd03825 GT1_wcfI_like This fam 97.9 0.0038 8.2E-08 57.5 21.7 94 223-328 243-345 (365)
99 PRK15484 lipopolysaccharide 1, 97.9 0.00042 9E-09 65.2 15.3 93 223-326 256-356 (380)
100 cd03806 GT1_ALG11_like This fa 97.8 0.001 2.3E-08 63.3 16.9 79 223-314 304-392 (419)
101 PRK09814 beta-1,6-galactofuran 97.8 0.0056 1.2E-07 56.4 21.1 98 222-333 205-318 (333)
102 cd04946 GT1_AmsK_like This fam 97.8 0.00063 1.4E-08 64.6 14.7 97 223-328 288-392 (407)
103 PF00534 Glycos_transf_1: Glyc 97.8 0.00075 1.6E-08 55.5 13.4 92 222-328 71-169 (172)
104 cd03813 GT1_like_3 This family 97.8 0.0063 1.4E-07 59.0 21.6 92 223-326 353-455 (475)
105 PF13844 Glyco_transf_41: Glyc 97.7 0.00027 5.8E-09 67.2 10.2 123 161-291 284-414 (468)
106 TIGR02468 sucrsPsyn_pln sucros 97.7 0.0058 1.3E-07 63.5 20.1 96 223-328 547-652 (1050)
107 cd04955 GT1_like_6 This family 97.6 0.0063 1.4E-07 56.0 18.4 90 222-327 246-344 (363)
108 cd03802 GT1_AviGT4_like This f 97.6 0.0077 1.7E-07 54.8 18.0 127 163-313 172-307 (335)
109 PLN02501 digalactosyldiacylgly 97.4 0.034 7.3E-07 55.5 20.7 75 225-314 602-681 (794)
110 COG0381 WecB UDP-N-acetylgluco 97.4 0.0087 1.9E-07 55.2 15.4 134 161-322 204-346 (383)
111 cd04950 GT1_like_1 Glycosyltra 97.4 0.021 4.6E-07 53.4 18.3 78 223-314 253-340 (373)
112 PLN02846 digalactosyldiacylgly 97.3 0.063 1.4E-06 51.6 21.3 72 228-314 288-363 (462)
113 PLN02949 transferase, transfer 97.3 0.01 2.2E-07 57.2 16.1 93 223-329 334-439 (463)
114 PRK15490 Vi polysaccharide bio 97.3 0.073 1.6E-06 52.0 21.5 63 223-291 454-521 (578)
115 PLN00142 sucrose synthase 97.2 0.083 1.8E-06 53.9 20.8 59 244-312 668-730 (815)
116 TIGR02470 sucr_synth sucrose s 97.2 0.093 2E-06 53.5 21.1 80 223-312 618-707 (784)
117 PF13692 Glyco_trans_1_4: Glyc 96.8 0.004 8.6E-08 49.0 6.6 79 223-313 52-134 (135)
118 PHA01633 putative glycosyl tra 96.5 0.14 3E-06 47.2 15.4 100 223-330 200-323 (335)
119 cd01635 Glycosyltransferase_GT 96.4 0.19 4.1E-06 42.4 14.8 49 223-273 160-216 (229)
120 COG3914 Spy Predicted O-linked 96.4 0.068 1.5E-06 51.6 12.4 125 160-291 428-561 (620)
121 KOG4626 O-linked N-acetylgluco 96.3 0.041 8.9E-07 53.4 10.5 127 160-292 757-889 (966)
122 PF06722 DUF1205: Protein of u 95.7 0.015 3.3E-07 43.2 4.1 53 148-200 27-84 (97)
123 cd03791 GT1_Glycogen_synthase_ 95.7 0.15 3.3E-06 49.3 12.1 135 163-313 297-441 (476)
124 PF06258 Mito_fiss_Elm1: Mitoc 95.6 1.2 2.5E-05 40.7 16.6 58 233-292 221-282 (311)
125 PRK14098 glycogen synthase; Pr 95.1 0.41 8.9E-06 46.6 12.9 132 163-312 308-449 (489)
126 COG1817 Uncharacterized protei 94.9 2.8 6E-05 37.8 17.5 41 6-47 74-114 (346)
127 TIGR02095 glgA glycogen/starch 94.8 0.2 4.4E-06 48.4 9.9 135 163-313 292-436 (473)
128 PRK00654 glgA glycogen synthas 94.8 0.56 1.2E-05 45.4 12.9 135 163-313 283-427 (466)
129 PRK10017 colanic acid biosynth 94.7 0.85 1.8E-05 43.5 13.4 165 151-329 224-409 (426)
130 PRK10125 putative glycosyl tra 94.0 0.81 1.7E-05 43.4 11.6 102 177-309 256-366 (405)
131 TIGR02193 heptsyl_trn_I lipopo 93.7 0.51 1.1E-05 43.0 9.6 140 153-312 171-319 (319)
132 PHA01630 putative group 1 glyc 93.7 1.2 2.5E-05 41.1 11.8 75 231-314 197-294 (331)
133 PF13524 Glyco_trans_1_2: Glyc 93.1 0.68 1.5E-05 33.6 7.6 53 249-314 9-62 (92)
134 TIGR03713 acc_sec_asp1 accesso 92.3 0.29 6.2E-06 48.0 5.9 74 224-314 409-488 (519)
135 TIGR02919 accessory Sec system 91.0 3.6 7.9E-05 39.4 11.7 91 222-327 327-422 (438)
136 PLN02316 synthase/transferase 90.5 5.6 0.00012 42.2 13.4 82 224-313 900-997 (1036)
137 PRK14099 glycogen synthase; Pr 89.8 9.4 0.0002 37.2 13.7 62 243-310 370-440 (485)
138 KOG1387 Glycosyltransferase [C 89.6 17 0.00036 33.5 16.1 277 8-331 143-443 (465)
139 PLN02939 transferase, transfer 89.0 5 0.00011 42.0 11.4 83 223-313 836-930 (977)
140 PF00731 AIRC: AIR carboxylase 88.3 5.4 0.00012 32.1 9.0 138 162-332 1-147 (150)
141 PF06925 MGDG_synth: Monogalac 86.2 1.3 2.8E-05 36.4 4.6 44 4-47 77-126 (169)
142 cd03788 GT1_TPS Trehalose-6-Ph 85.1 21 0.00046 34.5 13.1 69 229-314 346-427 (460)
143 PF07429 Glyco_transf_56: 4-al 84.6 28 0.0006 32.2 12.5 139 163-313 185-332 (360)
144 cd03789 GT1_LPS_heptosyltransf 83.9 6.6 0.00014 34.9 8.4 96 161-268 121-223 (279)
145 TIGR02400 trehalose_OtsA alpha 82.3 8.9 0.00019 37.0 9.1 85 230-330 342-437 (456)
146 TIGR02201 heptsyl_trn_III lipo 81.8 11 0.00024 34.7 9.3 99 160-268 180-285 (344)
147 cd03793 GT1_Glycogen_synthase_ 80.8 7.1 0.00015 38.6 7.8 94 235-331 469-571 (590)
148 PF05159 Capsule_synth: Capsul 79.7 12 0.00026 33.1 8.5 41 226-269 185-225 (269)
149 PRK02797 4-alpha-L-fucosyltran 79.4 50 0.0011 30.1 12.4 137 163-312 146-292 (322)
150 COG4370 Uncharacterized protei 78.4 3.3 7.1E-05 37.3 4.2 71 234-314 305-379 (412)
151 COG0438 RfaG Glycosyltransfera 77.1 50 0.0011 28.9 13.6 80 223-314 256-342 (381)
152 PRK10422 lipopolysaccharide co 77.0 20 0.00043 33.1 9.4 98 161-268 183-287 (352)
153 PLN03063 alpha,alpha-trehalose 74.3 44 0.00095 34.9 11.8 63 236-313 371-442 (797)
154 PF03033 Glyco_transf_28: Glyc 74.0 1.1 2.3E-05 35.2 0.1 34 16-49 100-133 (139)
155 PRK03359 putative electron tra 73.8 6.2 0.00013 34.9 4.8 41 6-46 102-148 (256)
156 COG3660 Predicted nucleoside-d 73.2 68 0.0015 28.6 12.5 37 230-268 234-271 (329)
157 PRK12342 hypothetical protein; 71.8 6.7 0.00014 34.6 4.5 41 6-46 99-145 (254)
158 PRK10964 ADP-heptose:LPS hepto 71.0 22 0.00047 32.4 8.0 132 161-313 178-321 (322)
159 TIGR00725 conserved hypothetic 71.0 14 0.00031 30.0 6.0 99 148-270 20-123 (159)
160 COG0041 PurE Phosphoribosylcar 70.8 54 0.0012 26.4 10.3 138 163-332 4-149 (162)
161 TIGR02195 heptsyl_trn_II lipop 70.6 25 0.00054 32.1 8.4 96 160-268 173-276 (334)
162 PF01075 Glyco_transf_9: Glyco 69.2 25 0.00054 30.4 7.7 99 160-268 104-208 (247)
163 PRK02155 ppnK NAD(+)/NADH kina 68.2 35 0.00075 30.8 8.5 51 243-313 64-118 (291)
164 PRK12446 undecaprenyldiphospho 67.9 30 0.00066 32.1 8.3 32 237-268 86-120 (352)
165 PF13477 Glyco_trans_4_2: Glyc 67.7 10 0.00022 29.4 4.5 40 7-46 65-108 (139)
166 cd01965 Nitrogenase_MoFe_beta_ 66.5 9.2 0.0002 36.6 4.7 36 6-44 361-396 (428)
167 PRK00039 ruvC Holliday junctio 66.3 8.6 0.00019 31.5 3.8 45 3-47 48-107 (164)
168 cd03466 Nitrogenase_NifN_2 Nit 65.8 10 0.00022 36.3 4.8 36 6-44 362-397 (429)
169 CHL00076 chlB photochlorophyll 65.6 10 0.00022 37.3 4.8 36 6-44 364-399 (513)
170 PRK10916 ADP-heptose:LPS hepto 65.5 24 0.00051 32.5 7.1 99 160-268 179-286 (348)
171 cd01981 Pchlide_reductase_B Pc 65.3 11 0.00023 36.1 4.9 37 6-45 360-396 (430)
172 COG0859 RfaF ADP-heptose:LPS h 64.2 20 0.00043 33.0 6.3 94 161-268 175-276 (334)
173 PF05728 UPF0227: Uncharacteri 64.2 12 0.00026 31.4 4.4 44 5-48 46-92 (187)
174 PRK02910 light-independent pro 64.0 12 0.00026 36.8 5.0 36 6-44 352-387 (519)
175 COG0052 RpsB Ribosomal protein 63.9 10 0.00023 33.0 4.0 32 17-48 157-190 (252)
176 TIGR01278 DPOR_BchB light-inde 63.8 12 0.00026 36.7 5.0 37 6-45 354-390 (511)
177 TIGR01286 nifK nitrogenase mol 62.1 13 0.00029 36.5 4.9 36 6-44 427-462 (515)
178 PRK14501 putative bifunctional 61.6 77 0.0017 32.6 10.6 76 228-314 346-428 (726)
179 PRK04885 ppnK inorganic polyph 60.9 19 0.0004 32.1 5.2 27 243-269 36-68 (265)
180 TIGR01285 nifN nitrogenase mol 60.4 14 0.00031 35.4 4.7 36 6-44 363-398 (432)
181 TIGR02398 gluc_glyc_Psyn gluco 59.9 1.8E+02 0.0039 28.5 12.2 90 226-331 364-464 (487)
182 cd01976 Nitrogenase_MoFe_alpha 59.9 11 0.00024 35.9 3.9 37 5-44 358-394 (421)
183 cd01974 Nitrogenase_MoFe_beta 59.8 16 0.00034 35.1 4.9 36 6-44 367-402 (435)
184 PLN02929 NADH kinase 59.2 14 0.0003 33.5 4.2 65 242-314 64-137 (301)
185 PRK03372 ppnK inorganic polyph 58.3 25 0.00054 32.0 5.7 52 243-314 73-128 (306)
186 PF04464 Glyphos_transf: CDP-G 58.1 13 0.00027 34.6 3.9 80 223-313 251-335 (369)
187 PF07355 GRDB: Glycine/sarcosi 58.0 17 0.00037 33.5 4.5 41 4-44 68-118 (349)
188 cd01141 TroA_d Periplasmic bin 57.7 19 0.0004 29.7 4.5 33 12-44 65-99 (186)
189 COG0801 FolK 7,8-dihydro-6-hyd 57.6 22 0.00048 28.9 4.7 29 163-191 3-31 (160)
190 PF08660 Alg14: Oligosaccharid 57.4 18 0.0004 29.8 4.3 36 11-46 87-130 (170)
191 PRK04539 ppnK inorganic polyph 57.4 29 0.00062 31.5 5.9 51 243-313 69-123 (296)
192 TIGR01470 cysG_Nterm siroheme 56.7 1.2E+02 0.0027 25.6 10.1 146 161-331 10-162 (205)
193 cd01840 SGNH_hydrolase_yrhL_li 55.4 63 0.0014 25.5 7.1 38 161-199 51-88 (150)
194 COG0503 Apt Adenine/guanine ph 55.2 18 0.0004 30.0 4.0 38 7-44 44-83 (179)
195 COG0496 SurE Predicted acid ph 54.8 21 0.00045 31.4 4.4 41 7-47 74-127 (252)
196 KOG0853 Glycosyltransferase [C 53.7 11 0.00024 36.4 2.8 63 253-326 380-442 (495)
197 TIGR00228 ruvC crossover junct 53.5 20 0.00042 29.1 3.7 45 3-47 44-103 (156)
198 PRK01911 ppnK inorganic polyph 53.3 29 0.00063 31.3 5.3 52 243-314 65-120 (292)
199 PRK09219 xanthine phosphoribos 52.3 20 0.00043 30.1 3.8 39 7-45 41-81 (189)
200 TIGR00730 conserved hypothetic 52.0 82 0.0018 26.1 7.4 118 149-286 22-153 (178)
201 PRK02649 ppnK inorganic polyph 51.9 29 0.00063 31.5 5.0 52 242-313 68-123 (305)
202 PRK14075 pnk inorganic polypho 51.8 34 0.00073 30.2 5.4 52 242-313 41-93 (256)
203 cd08194 Fe-ADH6 Iron-containin 51.5 35 0.00075 32.0 5.7 43 151-195 14-56 (375)
204 PRK06718 precorrin-2 dehydroge 51.3 1.2E+02 0.0025 25.7 8.4 143 161-331 11-162 (202)
205 TIGR02638 lactal_redase lactal 50.9 27 0.00059 32.8 4.9 11 261-271 129-139 (379)
206 TIGR02015 BchY chlorophyllide 50.8 21 0.00046 34.1 4.2 32 10-44 349-380 (422)
207 PRK07313 phosphopantothenoylcy 50.7 1.5E+02 0.0032 24.7 12.6 139 163-313 4-179 (182)
208 PF13579 Glyco_trans_4_4: Glyc 50.7 13 0.00029 28.9 2.5 41 5-45 60-104 (160)
209 TIGR01917 gly_red_sel_B glycin 50.6 25 0.00055 33.3 4.4 41 4-44 64-114 (431)
210 PRK03202 6-phosphofructokinase 50.4 91 0.002 28.6 8.0 38 236-273 87-127 (320)
211 TIGR01918 various_sel_PB selen 50.3 26 0.00056 33.2 4.4 41 4-44 64-114 (431)
212 cd01980 Chlide_reductase_Y Chl 50.2 27 0.00059 33.3 4.8 34 9-45 343-376 (416)
213 PRK14077 pnk inorganic polypho 50.2 34 0.00074 30.8 5.2 51 243-313 65-119 (287)
214 PLN02948 phosphoribosylaminoim 49.9 2.8E+02 0.0061 27.8 12.0 28 244-271 467-497 (577)
215 TIGR00661 MJ1255 conserved hyp 49.8 61 0.0013 29.4 7.0 34 236-269 87-120 (321)
216 cd07766 DHQ_Fe-ADH Dehydroquin 49.4 48 0.0011 30.3 6.3 28 243-271 79-113 (332)
217 TIGR01284 alt_nitrog_alph nitr 49.0 17 0.00037 35.1 3.2 34 7-43 386-419 (457)
218 PF01975 SurE: Survival protei 49.0 14 0.0003 31.3 2.3 39 9-47 84-135 (196)
219 TIGR01862 N2-ase-Ialpha nitrog 48.6 21 0.00045 34.4 3.7 35 6-43 377-411 (443)
220 PRK03708 ppnK inorganic polyph 48.4 33 0.00071 30.8 4.7 51 243-313 58-111 (277)
221 cd00763 Bacterial_PFK Phosphof 48.3 98 0.0021 28.3 7.9 38 236-273 86-126 (317)
222 PRK14478 nitrogenase molybdenu 48.2 22 0.00048 34.6 3.9 34 6-42 383-416 (475)
223 PRK04940 hypothetical protein; 47.8 27 0.00058 29.1 3.8 32 16-47 60-92 (180)
224 PF01497 Peripla_BP_2: Peripla 47.7 32 0.00069 29.3 4.6 37 11-47 55-93 (238)
225 COG3195 Uncharacterized protei 47.3 98 0.0021 25.3 6.7 74 253-331 88-163 (176)
226 PF03808 Glyco_tran_WecB: Glyc 46.8 1.6E+02 0.0035 24.1 10.5 85 106-198 50-134 (172)
227 PLN02470 acetolactate synthase 46.6 1.2E+02 0.0025 30.4 8.8 28 242-269 76-109 (585)
228 cd08181 PPD-like 1,3-propanedi 46.5 41 0.00089 31.3 5.3 10 262-271 124-133 (357)
229 PRK14092 2-amino-4-hydroxy-6-h 46.3 46 0.00099 27.2 4.9 32 158-189 4-35 (163)
230 PRK15454 ethanol dehydrogenase 45.6 41 0.00089 31.8 5.2 19 176-194 63-81 (395)
231 TIGR01283 nifE nitrogenase mol 45.5 32 0.00069 33.2 4.5 36 5-43 384-419 (456)
232 TIGR01860 VNFD nitrogenase van 45.5 25 0.00054 34.0 3.8 31 8-41 389-419 (461)
233 COG2086 FixA Electron transfer 45.4 42 0.0009 29.8 4.8 42 6-47 101-148 (260)
234 KOG1344 Predicted histone deac 45.0 40 0.00087 29.2 4.4 45 4-48 236-302 (324)
235 PF04413 Glycos_transf_N: 3-De 45.0 35 0.00076 28.5 4.2 41 6-46 85-127 (186)
236 PF02844 GARS_N: Phosphoribosy 44.6 27 0.00059 26.0 3.0 38 5-42 51-91 (100)
237 PRK10624 L-1,2-propanediol oxi 44.5 47 0.001 31.2 5.4 43 151-195 21-63 (382)
238 PRK01231 ppnK inorganic polyph 44.5 47 0.001 30.0 5.2 52 243-314 63-118 (295)
239 cd06559 Endonuclease_V Endonuc 44.4 25 0.00053 30.1 3.2 39 8-46 83-130 (208)
240 PRK03501 ppnK inorganic polyph 44.3 61 0.0013 28.8 5.7 53 243-314 40-97 (264)
241 PF01012 ETF: Electron transfe 43.9 29 0.00063 28.0 3.5 43 4-46 78-123 (164)
242 PRK05562 precorrin-2 dehydroge 43.8 2.1E+02 0.0047 24.7 9.5 143 161-332 26-178 (223)
243 cd08191 HHD 6-hydroxyhexanoate 43.7 56 0.0012 30.7 5.8 44 150-196 13-56 (386)
244 PRK03378 ppnK inorganic polyph 43.6 46 0.001 30.1 5.0 52 243-314 64-119 (292)
245 PRK13931 stationary phase surv 43.4 46 0.001 29.5 4.8 37 9-45 80-129 (261)
246 PLN02293 adenine phosphoribosy 43.3 40 0.00086 28.3 4.2 40 5-44 51-92 (187)
247 cd01147 HemV-2 Metal binding p 43.0 42 0.0009 29.2 4.6 37 10-46 68-107 (262)
248 cd01143 YvrC Periplasmic bindi 42.8 46 0.001 27.4 4.6 34 12-45 56-90 (195)
249 cd08176 LPO Lactadehyde:propan 42.5 44 0.00094 31.3 4.8 11 261-271 126-136 (377)
250 PF02826 2-Hacid_dh_C: D-isome 42.4 71 0.0015 26.3 5.6 106 161-310 37-143 (178)
251 PF05014 Nuc_deoxyrib_tr: Nucl 42.3 65 0.0014 24.1 5.0 36 236-271 57-98 (113)
252 cd01977 Nitrogenase_VFe_alpha 42.1 26 0.00056 33.4 3.3 34 7-43 349-382 (415)
253 cd01715 ETF_alpha The electron 42.0 44 0.00095 27.2 4.3 43 5-47 72-117 (168)
254 cd08171 GlyDH-like2 Glycerol d 42.0 73 0.0016 29.4 6.2 93 149-269 12-109 (345)
255 PF05225 HTH_psq: helix-turn-h 41.8 32 0.00068 21.4 2.6 26 300-327 1-26 (45)
256 PRK00994 F420-dependent methyl 41.5 53 0.0011 28.6 4.6 40 8-47 52-97 (277)
257 TIGR01744 XPRTase xanthine pho 41.5 37 0.00081 28.5 3.8 38 7-44 41-80 (191)
258 cd01971 Nitrogenase_VnfN_like 41.5 47 0.001 31.8 4.9 35 7-44 358-396 (427)
259 cd03784 GT1_Gtf_like This fami 41.4 1.3E+02 0.0028 28.0 7.9 36 163-200 3-38 (401)
260 TIGR00421 ubiX_pad polyprenyl 41.4 1.8E+02 0.0038 24.2 7.8 34 258-291 108-145 (181)
261 cd08193 HVD 5-hydroxyvalerate 41.2 56 0.0012 30.6 5.4 43 150-194 16-58 (376)
262 PRK02231 ppnK inorganic polyph 40.9 61 0.0013 28.9 5.3 51 243-313 43-97 (272)
263 cd01968 Nitrogenase_NifE_I Nit 40.6 34 0.00073 32.5 3.8 35 6-43 346-380 (410)
264 PF06506 PrpR_N: Propionate ca 40.4 11 0.00024 31.1 0.5 33 239-272 31-63 (176)
265 cd00316 Oxidoreductase_nitroge 40.1 45 0.00097 31.3 4.6 38 5-45 337-374 (399)
266 PF06506 PrpR_N: Propionate ca 40.0 48 0.001 27.3 4.2 33 13-48 122-154 (176)
267 COG1938 Archaeal enzymes of AT 39.9 2.6E+02 0.0056 24.5 9.4 30 246-275 153-184 (244)
268 TIGR02482 PFKA_ATP 6-phosphofr 39.9 1.5E+02 0.0032 27.0 7.6 38 236-273 85-126 (301)
269 PRK01185 ppnK inorganic polyph 39.9 56 0.0012 29.2 4.8 52 243-314 53-105 (271)
270 TIGR01162 purE phosphoribosyla 39.8 2E+02 0.0044 23.3 10.5 133 166-332 3-145 (156)
271 cd00529 RuvC_resolvase Hollida 39.5 43 0.00094 26.9 3.8 22 3-24 46-67 (154)
272 cd07039 TPP_PYR_POX Pyrimidine 39.5 1E+02 0.0022 25.0 6.0 26 244-269 65-96 (164)
273 TIGR01282 nifD nitrogenase mol 39.0 16 0.00035 35.4 1.4 36 5-43 393-428 (466)
274 TIGR00715 precor6x_red precorr 38.8 69 0.0015 28.3 5.2 40 5-44 54-99 (256)
275 TIGR02931 anfK_nitrog Fe-only 38.8 51 0.0011 31.9 4.8 36 6-44 376-413 (461)
276 PRK14076 pnk inorganic polypho 38.7 57 0.0012 32.5 5.2 53 242-314 348-404 (569)
277 COG2099 CobK Precorrin-6x redu 38.7 76 0.0016 28.0 5.3 40 5-44 55-100 (257)
278 cd01973 Nitrogenase_VFe_beta_l 38.4 49 0.0011 32.0 4.6 36 6-44 369-406 (454)
279 PF00391 PEP-utilizers: PEP-ut 38.0 41 0.00088 23.7 3.0 30 15-44 29-60 (80)
280 cd01714 ETF_beta The electron 37.8 47 0.001 28.1 3.9 40 6-45 98-143 (202)
281 PRK14477 bifunctional nitrogen 37.6 40 0.00086 35.8 4.1 37 5-44 378-414 (917)
282 COG2159 Predicted metal-depend 37.5 1.4E+02 0.003 27.0 7.1 172 133-328 99-288 (293)
283 PLN02935 Bifunctional NADH kin 37.5 85 0.0018 30.7 5.9 52 242-313 262-317 (508)
284 PF05693 Glycogen_syn: Glycoge 37.1 54 0.0012 32.7 4.6 73 254-331 485-566 (633)
285 PRK02645 ppnK inorganic polyph 36.9 88 0.0019 28.4 5.8 28 243-270 58-89 (305)
286 PF00148 Oxidored_nitro: Nitro 36.7 54 0.0012 30.8 4.6 38 5-45 330-367 (398)
287 cd01972 Nitrogenase_VnfE_like 36.3 48 0.001 31.7 4.1 38 6-44 363-400 (426)
288 COG1454 EutG Alcohol dehydroge 36.2 1.2E+02 0.0027 28.4 6.7 44 150-195 19-62 (377)
289 PF11071 DUF2872: Protein of u 35.9 74 0.0016 24.9 4.2 31 236-268 68-106 (141)
290 PF01993 MTD: methylene-5,6,7, 35.9 87 0.0019 27.3 5.1 40 8-47 51-96 (276)
291 cd01985 ETF The electron trans 35.6 56 0.0012 26.9 4.0 42 5-46 80-124 (181)
292 PRK00346 surE 5'(3')-nucleotid 35.4 66 0.0014 28.3 4.5 31 15-45 81-124 (250)
293 PF04493 Endonuclease_5: Endon 35.4 62 0.0013 27.6 4.2 41 6-46 77-126 (206)
294 PRK15411 rcsA colanic acid cap 35.2 77 0.0017 26.8 4.9 41 6-46 37-86 (207)
295 TIGR02932 vnfK_nitrog V-contai 34.9 61 0.0013 31.3 4.6 35 7-44 374-409 (457)
296 PRK06270 homoserine dehydrogen 34.8 2.9E+02 0.0063 25.4 9.0 58 233-290 80-149 (341)
297 PRK06932 glycerate dehydrogena 34.6 1.6E+02 0.0034 26.9 7.1 61 161-253 148-208 (314)
298 PF10933 DUF2827: Protein of u 34.5 1.1E+02 0.0024 28.4 5.9 89 224-331 253-348 (364)
299 PF10087 DUF2325: Uncharacteri 34.4 83 0.0018 22.9 4.3 34 16-49 48-87 (97)
300 PRK13933 stationary phase surv 34.4 76 0.0017 28.0 4.7 32 15-46 86-130 (253)
301 PRK11914 diacylglycerol kinase 34.4 1.1E+02 0.0023 27.7 6.0 27 244-270 66-96 (306)
302 TIGR01861 ANFD nitrogenase iro 34.3 53 0.0011 32.3 4.1 32 9-43 391-422 (513)
303 TIGR00147 lipid kinase, YegS/R 34.3 2E+02 0.0042 25.7 7.6 27 244-270 59-91 (293)
304 cd01424 MGS_CPS_II Methylglyox 34.2 91 0.002 23.2 4.6 39 5-43 56-101 (110)
305 PF06180 CbiK: Cobalt chelatas 34.0 63 0.0014 28.7 4.2 39 162-200 2-43 (262)
306 PRK08236 hypothetical protein; 33.8 61 0.0013 27.7 4.0 39 9-47 146-184 (212)
307 COG1052 LdhA Lactate dehydroge 33.4 1.6E+02 0.0034 27.1 6.8 105 162-310 148-252 (324)
308 KOG2941 Beta-1,4-mannosyltrans 33.2 4.1E+02 0.0089 24.9 12.5 146 159-328 252-424 (444)
309 TIGR00732 dprA DNA protecting 33.2 3.1E+02 0.0068 23.5 9.1 46 245-290 159-211 (220)
310 COG3245 CycB Cytochrome c5 [En 33.0 80 0.0017 24.2 3.9 53 259-312 60-122 (126)
311 PRK13810 orotate phosphoribosy 32.9 62 0.0014 27.1 3.8 38 7-44 64-103 (187)
312 PRK13932 stationary phase surv 32.8 84 0.0018 27.8 4.7 31 15-45 90-133 (257)
313 PRK05579 bifunctional phosphop 32.7 4.4E+02 0.0095 25.0 11.3 141 161-313 7-182 (399)
314 cd08551 Fe-ADH iron-containing 32.5 1.1E+02 0.0023 28.6 5.8 45 150-196 13-57 (370)
315 cd01967 Nitrogenase_MoFe_alpha 32.3 56 0.0012 30.8 3.9 36 6-44 345-380 (406)
316 cd08190 HOT Hydroxyacid-oxoaci 32.2 1.1E+02 0.0023 29.2 5.7 43 151-195 14-56 (414)
317 cd08188 Fe-ADH4 Iron-containin 31.9 94 0.002 29.1 5.3 44 151-196 19-62 (377)
318 PRK13337 putative lipid kinase 31.9 2.2E+02 0.0048 25.6 7.6 28 244-271 59-92 (304)
319 cd03818 GT1_ExpC_like This fam 31.8 2.8E+02 0.006 25.8 8.5 25 176-200 10-34 (396)
320 TIGR01012 Sa_S2_E_A ribosomal 31.5 69 0.0015 27.1 3.8 33 16-48 108-142 (196)
321 smart00851 MGS MGS-like domain 31.3 89 0.0019 22.3 4.0 37 6-42 45-90 (90)
322 PRK13935 stationary phase surv 31.2 89 0.0019 27.6 4.6 31 15-45 85-128 (253)
323 PRK14476 nitrogenase molybdenu 31.1 71 0.0015 30.9 4.4 33 7-44 364-396 (455)
324 PF02075 RuvC: Crossover junct 31.0 48 0.001 26.6 2.7 45 3-47 45-104 (149)
325 PRK12311 rpsB 30S ribosomal pr 31.0 69 0.0015 29.4 4.0 33 16-48 152-186 (326)
326 PRK04020 rps2P 30S ribosomal p 30.9 72 0.0016 27.2 3.9 33 16-48 114-148 (204)
327 TIGR00143 hypF [NiFe] hydrogen 30.5 80 0.0017 32.5 4.8 40 15-54 414-454 (711)
328 TIGR01743 purR_Bsub pur operon 30.4 66 0.0014 28.7 3.7 36 10-45 122-159 (268)
329 KOG0081 GTPase Rab27, small G 30.2 83 0.0018 25.7 3.8 34 15-48 123-166 (219)
330 KOG1432 Predicted DNA repair e 30.0 87 0.0019 28.9 4.4 40 7-46 91-143 (379)
331 TIGR03609 S_layer_CsaB polysac 29.8 3.1E+02 0.0067 24.4 8.2 31 236-269 246-276 (298)
332 PRK08558 adenine phosphoribosy 29.8 64 0.0014 28.2 3.5 33 12-44 107-141 (238)
333 TIGR00087 surE 5'/3'-nucleotid 29.7 97 0.0021 27.2 4.6 32 15-46 85-129 (244)
334 PF13167 GTP-bdg_N: GTP-bindin 29.5 1.4E+02 0.0031 21.9 4.8 37 5-41 46-84 (95)
335 cd08187 BDH Butanol dehydrogen 29.4 1E+02 0.0022 29.0 5.0 33 163-196 31-63 (382)
336 PF04558 tRNA_synt_1c_R1: Glut 29.3 50 0.0011 27.1 2.6 28 277-313 104-131 (164)
337 PRK09213 pur operon repressor; 29.2 71 0.0015 28.5 3.7 36 10-45 124-161 (271)
338 cd00363 PFK Phosphofructokinas 29.1 2.3E+02 0.005 26.2 7.2 38 236-273 86-132 (338)
339 TIGR00696 wecB_tagA_cpsF bacte 29.1 3.3E+02 0.0072 22.5 10.4 25 16-42 5-29 (177)
340 PRK02304 adenine phosphoribosy 29.0 78 0.0017 26.0 3.8 34 10-43 45-80 (175)
341 PRK13934 stationary phase surv 28.9 90 0.002 27.8 4.3 32 14-45 82-127 (266)
342 PRK13059 putative lipid kinase 28.8 2.2E+02 0.0047 25.6 6.9 28 244-271 58-91 (295)
343 PRK07077 hypothetical protein; 28.7 91 0.002 27.2 4.2 32 16-47 135-166 (238)
344 PF03033 Glyco_transf_28: Glyc 28.7 1.3E+02 0.0027 23.1 4.8 35 163-199 1-35 (139)
345 COG0299 PurN Folate-dependent 28.6 91 0.002 26.3 4.0 30 16-45 29-58 (200)
346 PRK08410 2-hydroxyacid dehydro 28.3 2.4E+02 0.0053 25.6 7.2 60 161-251 146-205 (311)
347 PRK03379 vitamin B12-transport 28.2 1.1E+02 0.0025 26.7 4.9 35 11-45 67-103 (260)
348 PF08459 UvrC_HhH_N: UvrC Heli 28.1 34 0.00073 27.8 1.4 41 3-43 60-111 (155)
349 cd08182 HEPD Hydroxyethylphosp 28.1 1.7E+02 0.0037 27.2 6.3 10 262-271 123-132 (367)
350 cd01423 MGS_CPS_I_III Methylgl 28.1 61 0.0013 24.5 2.8 37 6-42 61-106 (116)
351 COG0775 Pfs Nucleoside phospho 27.7 94 0.002 27.0 4.2 39 9-47 161-199 (234)
352 cd07035 TPP_PYR_POX_like Pyrim 27.6 2.4E+02 0.0051 22.2 6.3 26 244-269 61-92 (155)
353 cd08192 Fe-ADH7 Iron-containin 27.4 1.3E+02 0.0027 28.1 5.3 10 262-271 127-136 (370)
354 PF13439 Glyco_transf_4: Glyco 27.4 88 0.0019 24.5 3.8 43 5-48 69-112 (177)
355 PRK04761 ppnK inorganic polyph 27.2 60 0.0013 28.5 2.9 28 243-270 26-57 (246)
356 PRK06487 glycerate dehydrogena 27.2 2.6E+02 0.0056 25.5 7.1 60 161-253 149-208 (317)
357 cd03412 CbiK_N Anaerobic cobal 27.0 1.2E+02 0.0026 23.5 4.2 37 162-198 2-40 (127)
358 PF00282 Pyridoxal_deC: Pyrido 26.9 1.5E+02 0.0033 27.7 5.8 70 243-313 104-190 (373)
359 cd08186 Fe-ADH8 Iron-containin 26.8 1.2E+02 0.0027 28.4 5.2 10 262-271 127-136 (383)
360 cd08185 Fe-ADH1 Iron-containin 26.8 1.7E+02 0.0036 27.4 6.0 33 162-195 27-59 (380)
361 cd01018 ZntC Metal binding pro 26.6 1.5E+02 0.0032 26.2 5.4 43 5-47 206-250 (266)
362 cd01139 TroA_f Periplasmic bin 26.5 1.1E+02 0.0023 28.0 4.6 35 11-45 86-126 (342)
363 KOG4417 Predicted endonuclease 26.4 71 0.0015 27.2 3.0 31 14-44 113-150 (261)
364 cd06330 PBP1_Arsenic_SBP_like 26.2 4.8E+02 0.01 23.4 10.0 42 5-46 56-100 (346)
365 PRK07525 sulfoacetaldehyde ace 26.2 4.6E+02 0.0099 26.2 9.3 27 243-269 69-101 (588)
366 KOG4175 Tryptophan synthase al 26.1 1.2E+02 0.0025 25.8 4.1 44 152-195 7-50 (268)
367 cd01149 HutB Hemin binding pro 26.0 1.1E+02 0.0024 26.2 4.3 35 10-44 52-88 (235)
368 PRK08155 acetolactate synthase 25.7 1.3E+02 0.0029 29.8 5.4 26 244-269 78-109 (564)
369 PF08030 NAD_binding_6: Ferric 25.6 52 0.0011 26.0 2.1 40 162-201 3-47 (156)
370 PRK07164 5'-methylthioadenosin 25.6 1E+02 0.0022 26.5 3.9 38 9-47 147-184 (218)
371 PRK13054 lipid kinase; Reviewe 25.6 3.8E+02 0.0083 24.0 8.0 28 244-271 58-93 (300)
372 cd07038 TPP_PYR_PDC_IPDC_like 25.4 2.6E+02 0.0057 22.5 6.2 26 244-269 61-92 (162)
373 cd07037 TPP_PYR_MenD Pyrimidin 25.3 59 0.0013 26.5 2.4 26 244-269 62-93 (162)
374 PF00920 ILVD_EDD: Dehydratase 25.1 83 0.0018 30.9 3.6 46 4-49 67-116 (521)
375 TIGR03646 YtoQ_fam YtoQ family 25.1 1.1E+02 0.0025 23.9 3.7 31 236-268 71-109 (144)
376 PRK13057 putative lipid kinase 25.0 1.2E+02 0.0026 27.1 4.5 27 244-270 52-82 (287)
377 cd01916 ACS_1 Acetyl-CoA synth 24.8 1.1E+02 0.0023 31.6 4.4 40 9-48 258-299 (731)
378 COG1154 Dxs Deoxyxylulose-5-ph 24.7 6.4E+02 0.014 25.4 9.4 115 161-313 502-623 (627)
379 cd01966 Nitrogenase_NifN_1 Nit 24.7 1E+02 0.0022 29.3 4.2 33 7-44 353-385 (417)
380 COG1927 Mtd Coenzyme F420-depe 24.6 1.1E+02 0.0025 26.0 3.9 41 7-47 51-97 (277)
381 KOG0069 Glyoxylate/hydroxypyru 24.5 5.7E+02 0.012 23.7 9.2 104 161-309 163-268 (336)
382 PRK09860 putative alcohol dehy 24.5 1.1E+02 0.0024 28.7 4.4 44 151-196 22-65 (383)
383 TIGR03164 UHCUDC OHCU decarbox 24.4 3.8E+02 0.0083 21.6 7.1 53 274-330 97-149 (157)
384 cd01425 RPS2 Ribosomal protein 24.3 1.2E+02 0.0026 25.5 4.1 33 15-47 126-160 (193)
385 cd01148 TroA_a Metal binding p 24.2 81 0.0018 27.9 3.3 34 11-44 74-113 (284)
386 PRK08057 cobalt-precorrin-6x r 24.0 1.9E+02 0.0041 25.4 5.4 42 4-45 53-100 (248)
387 PRK09534 btuF corrinoid ABC tr 24.0 1.3E+02 0.0028 28.0 4.6 33 12-44 115-148 (359)
388 PRK00455 pyrE orotate phosphor 23.9 1.3E+02 0.0028 25.4 4.3 38 7-44 53-94 (202)
389 PF03641 Lysine_decarbox: Poss 23.9 1.7E+02 0.0036 22.8 4.6 32 237-269 50-91 (133)
390 TIGR01704 MTA/SAH-Nsdase 5'-me 23.9 1.1E+02 0.0025 26.2 4.1 32 16-47 164-195 (228)
391 TIGR00347 bioD dethiobiotin sy 23.9 2E+02 0.0043 23.0 5.3 32 15-46 98-138 (166)
392 PRK14048 ferrichrome/ferrioxam 23.7 1.3E+02 0.0029 27.9 4.8 34 12-45 117-156 (374)
393 PRK13016 dihydroxy-acid dehydr 23.6 1.1E+02 0.0024 30.4 4.2 44 4-47 103-150 (577)
394 PRK13017 dihydroxy-acid dehydr 23.3 1.2E+02 0.0026 30.3 4.3 44 4-47 108-155 (596)
395 cd07025 Peptidase_S66 LD-Carbo 23.2 1.6E+02 0.0036 26.3 5.0 28 175-202 47-74 (282)
396 cd08183 Fe-ADH2 Iron-containin 23.1 2.2E+02 0.0048 26.6 6.1 19 178-196 35-53 (374)
397 TIGR03457 sulphoacet_xsc sulfo 23.1 4.8E+02 0.01 26.0 8.8 27 243-269 65-97 (579)
398 TIGR00110 ilvD dihydroxy-acid 23.1 1.2E+02 0.0027 29.9 4.3 44 4-47 77-124 (535)
399 PRK00911 dihydroxy-acid dehydr 22.9 1.2E+02 0.0027 29.9 4.4 44 4-47 97-144 (552)
400 PRK04946 hypothetical protein; 22.9 81 0.0018 26.3 2.7 58 177-255 110-168 (181)
401 KOG1250 Threonine/serine dehyd 22.5 6.8E+02 0.015 23.9 14.7 41 8-48 105-148 (457)
402 cd00532 MGS-like MGS-like doma 22.4 1.7E+02 0.0036 22.0 4.2 39 5-43 56-105 (112)
403 PRK05584 5'-methylthioadenosin 22.3 1.4E+02 0.0031 25.5 4.4 36 12-47 161-196 (230)
404 PRK12448 dihydroxy-acid dehydr 22.3 1.3E+02 0.0028 30.2 4.3 44 4-47 99-146 (615)
405 COG5663 Uncharacterized conser 22.3 1E+02 0.0022 25.5 3.0 34 12-46 130-163 (194)
406 PHA02754 hypothetical protein; 22.2 1.5E+02 0.0033 19.5 3.3 16 317-332 13-28 (67)
407 PF01297 TroA: Periplasmic sol 22.2 1.2E+02 0.0025 26.6 3.8 42 5-46 188-231 (256)
408 TIGR03659 IsdE heme ABC transp 22.1 1.6E+02 0.0035 26.1 4.8 35 11-45 86-121 (289)
409 PRK05634 nucleosidase; Provisi 22.0 1.3E+02 0.0028 25.1 3.8 30 18-47 126-155 (185)
410 COG4565 CitB Response regulato 22.0 86 0.0019 26.9 2.7 45 3-47 33-84 (224)
411 TIGR03878 thermo_KaiC_2 KaiC d 22.0 1.6E+02 0.0036 25.8 4.7 38 7-44 122-173 (259)
412 TIGR01498 folK 2-amino-4-hydro 21.9 1.1E+02 0.0024 23.8 3.2 28 164-191 1-28 (127)
413 PRK06131 dihydroxy-acid dehydr 21.9 1.3E+02 0.0029 29.8 4.4 44 4-47 99-146 (571)
414 PRK12560 adenine phosphoribosy 21.8 1.2E+02 0.0027 25.3 3.7 36 8-44 44-81 (187)
415 COG0129 IlvD Dihydroxyacid deh 21.8 1.3E+02 0.0029 29.8 4.3 43 5-47 109-155 (575)
416 PRK13789 phosphoribosylamine-- 21.8 1.3E+02 0.0028 28.8 4.3 38 5-42 57-97 (426)
417 PRK13798 putative OHCU decarbo 21.7 4.5E+02 0.0098 21.5 7.1 54 274-331 102-155 (166)
418 cd01144 BtuF Cobalamin binding 21.7 1.6E+02 0.0035 25.2 4.6 35 10-44 51-87 (245)
419 PTZ00254 40S ribosomal protein 21.5 1.3E+02 0.0029 26.4 3.9 33 16-48 118-152 (249)
420 COG0784 CheY FOG: CheY-like re 21.4 2E+02 0.0044 21.2 4.7 36 7-42 41-84 (130)
421 cd01121 Sms Sms (bacterial rad 21.4 1.8E+02 0.004 27.2 5.1 41 5-45 147-208 (372)
422 TIGR02483 PFK_mixed phosphofru 21.4 84 0.0018 28.9 2.8 38 236-273 88-128 (324)
423 cd00984 DnaB_C DnaB helicase C 21.3 1.4E+02 0.0029 25.7 4.0 39 7-45 114-171 (242)
424 TIGR02329 propionate_PrpR prop 21.3 1.6E+02 0.0036 29.0 4.9 33 11-46 140-172 (526)
425 CHL00067 rps2 ribosomal protei 21.3 1.4E+02 0.003 26.0 4.0 33 16-48 161-195 (230)
426 PRK08057 cobalt-precorrin-6x r 21.3 1.9E+02 0.0042 25.4 4.9 39 6-44 180-222 (248)
427 PLN02727 NAD kinase 21.2 1.8E+02 0.0038 30.8 5.2 53 242-314 743-799 (986)
428 PRK14116 gpmA phosphoglyceromu 21.1 50 0.0011 28.5 1.2 22 244-265 177-198 (228)
429 PF02571 CbiJ: Precorrin-6x re 21.0 2.2E+02 0.0047 25.1 5.2 42 4-45 54-101 (249)
430 COG3150 Predicted esterase [Ge 20.9 1.1E+02 0.0023 25.4 2.9 44 4-47 45-91 (191)
431 PF02603 Hpr_kinase_N: HPr Ser 20.8 1.4E+02 0.003 23.1 3.6 42 6-47 72-115 (127)
432 PRK10239 2-amino-4-hydroxy-6-h 20.7 1.8E+02 0.004 23.6 4.3 27 163-189 3-29 (159)
433 PF11009 DUF2847: Protein of u 20.6 2.4E+02 0.0051 21.2 4.5 82 148-243 7-90 (105)
434 PF01372 Melittin: Melittin; 20.5 19 0.00042 19.1 -0.9 17 251-267 1-17 (26)
435 COG1737 RpiR Transcriptional r 20.5 2.8E+02 0.0061 24.7 6.0 82 153-269 125-211 (281)
436 PF06792 UPF0261: Uncharacteri 20.5 6.1E+02 0.013 24.2 8.2 96 159-270 183-278 (403)
437 TIGR01011 rpsB_bact ribosomal 20.4 2.5E+02 0.0053 24.3 5.3 33 16-48 155-189 (225)
438 smart00046 DAGKc Diacylglycero 20.4 93 0.002 23.8 2.5 29 244-272 51-88 (124)
439 PRK15409 bifunctional glyoxyla 20.2 4.9E+02 0.011 23.8 7.6 66 161-254 146-212 (323)
440 PRK05973 replicative DNA helic 20.1 1.8E+02 0.0038 25.4 4.4 38 8-45 139-191 (237)
No 1
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1e-51 Score=391.00 Aligned_cols=328 Identities=32% Similarity=0.544 Sum_probs=249.7
Q ss_pred cchHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccc----cC--CCCCCCC-cccC-CCc
Q 044441 3 DAKPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNI----IN--PSLKYPF-FESD-FLD 74 (333)
Q Consensus 3 ~~~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~----~~--~~~~~p~-~~~~-~~~ 74 (333)
.+.+.+.+++++.+|+|||+|.+++|+..+|+++|||.+.|+++++...+.+.++. .. +...-+. ...+ .+.
T Consensus 97 ~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~ 176 (472)
T PLN02670 97 LLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLRSTAEDFTVVPPWVPF 176 (472)
T ss_pred HhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCCCccccccCCCCcCCC
Confidence 35677788888888999999999999999999999999999888877666543221 00 0000000 0111 111
Q ss_pred -----ccccccccccCCCC-C--CchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCC--CC-
Q 044441 75 -----RENKKINRFMHPTA-N--GTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQE--SI- 143 (333)
Q Consensus 75 -----~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~--~~- 143 (333)
.....++.++.... . ....+.+....+.. ++.+++|||.+||+++++.++..++++++.|||+... ..
T Consensus 177 ~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~-~~gvlvNTf~eLE~~~l~~l~~~~~~~v~~VGPl~~~~~~~~ 255 (472)
T PLN02670 177 ESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGG-SDVVIIRSSPEFEPEWFDLLSDLYRKPIIPIGFLPPVIEDDE 255 (472)
T ss_pred CccccccHHHhhHHHhccCccchHHHHHHHHHhhccc-CCEEEEeCHHHHhHHHHHHHHHhhCCCeEEEecCCccccccc
Confidence 11112333332111 1 11112222233445 7899999999999999999877555689999999642 11
Q ss_pred -CC----CChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHH
Q 044441 144 -FK----EDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEE 218 (333)
Q Consensus 144 -~~----~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 218 (333)
.. ...+++.+||+.+++++||||||||....+.+++.+++.+|+.++++|||++....+...+....+|++|.+|
T Consensus 256 ~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~ 335 (472)
T PLN02670 256 EDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEER 335 (472)
T ss_pred cccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHh
Confidence 11 1125799999999888999999999999999999999999999999999999854221111123689999999
Q ss_pred HHhcCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCC
Q 044441 219 IERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQR 298 (333)
Q Consensus 219 ~~~~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~ 298 (333)
+ ...++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.|+|+.+.+.+..+.
T Consensus 336 ~--~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~ 413 (472)
T PLN02670 336 V--KGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGS 413 (472)
T ss_pred c--cCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCc
Confidence 9 77889999999999999999999999999999999999999999999999999999999999999999974321235
Q ss_pred cCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhhC
Q 044441 299 LRREEVARVIKHVLLQEEGKQIRRKAKEMSERMRR 333 (333)
Q Consensus 299 ~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~ 333 (333)
++.++|+++|+++|.++++++||+||+++++++++
T Consensus 414 ~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~ 448 (472)
T PLN02670 414 FTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD 448 (472)
T ss_pred CcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC
Confidence 89999999999999865567999999999999874
No 2
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=8.4e-51 Score=382.04 Aligned_cols=324 Identities=27% Similarity=0.506 Sum_probs=249.3
Q ss_pred cchHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccC---CCCCCCCcccCCCcccccc
Q 044441 3 DAKPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIIN---PSLKYPFFESDFLDRENKK 79 (333)
Q Consensus 3 ~~~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~~~~~~ 79 (333)
.+.+.+.+++++.+|||||+|+ ++|+.++|+++|||.+.|++++++....+..+... +.+++|.....++......
T Consensus 95 ~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~pglp~~~v~l~~~~l~~ 173 (453)
T PLN02764 95 LTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLVPGGELGVPPPGYPSSKVLLRKQDAYT 173 (453)
T ss_pred HhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhcccccCCCCCCCCCCCcccCcHhhCcc
Confidence 3457788888888899999995 89999999999999999999998877765432111 1122331100011111001
Q ss_pred cccccCCC---CCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCC-CCCChhHHHHhh
Q 044441 80 INRFMHPT---ANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESI-FKEDDTKIMDWL 155 (333)
Q Consensus 80 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~-~~~~~~~l~~~l 155 (333)
+..+ .+. ........++.+.+.. ++.+++|||.+||++++++++...+++++.|||+...+. ....+++|.+||
T Consensus 174 ~~~~-~~~~~~~~~~~~~~~~~~~~~~-s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~~~~~~~~~cl~WL 251 (453)
T PLN02764 174 MKNL-EPTNTIDVGPNLLERVTTSLMN-SDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFPEPDKTRELEERWVKWL 251 (453)
T ss_pred hhhc-CCCccchhHHHHHHHHHHhhcc-CCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCccCccccccchhHHHHHH
Confidence 1010 010 1111233444344555 789999999999999999987754568999999964321 112356899999
Q ss_pred cCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch
Q 044441 156 SQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA 235 (333)
Q Consensus 156 ~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~ 235 (333)
|.+++++||||||||....+.+++.+++.+|+..+.+|+|+++.+.+.+ +....+|++|.+|+ ...++++.+|+||.
T Consensus 252 D~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~-~~~~~lp~~f~~r~--~grG~v~~~W~PQ~ 328 (453)
T PLN02764 252 SGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSS-TIQEALPEGFEERV--KGRGVVWGGWVQQP 328 (453)
T ss_pred hCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCc-chhhhCCcchHhhh--ccCCcEEeCCCCHH
Confidence 9999999999999999999999999999999999999999998643321 12346999999999 78899999999999
Q ss_pred hhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhH-hCeeeEeecCccCCCcCHHHHHHHHHHHhcC
Q 044441 236 KILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVD-IGMGMDVPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 236 ~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~-~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++ .|+|+.+.+++ ...++.++|+++|+++|++
T Consensus 329 ~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~-~~~~~~e~i~~av~~vm~~ 407 (453)
T PLN02764 329 LILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREE-TGWFSKESLRDAINSVMKR 407 (453)
T ss_pred HHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEecccc-CCccCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999964 79999985321 1358999999999999975
Q ss_pred --cchHHHHHHHHHHHHHhhC
Q 044441 315 --EEGKQIRRKAKEMSERMRR 333 (333)
Q Consensus 315 --~~~~~~~~~a~~l~~~~~~ 333 (333)
++++++|++|+++++.+++
T Consensus 408 ~~~~g~~~r~~a~~~~~~~~~ 428 (453)
T PLN02764 408 DSEIGNLVKKNHTKWRETLAS 428 (453)
T ss_pred CchhHHHHHHHHHHHHHHHHh
Confidence 4467899999999998753
No 3
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.1e-50 Score=384.31 Aligned_cols=324 Identities=28% Similarity=0.485 Sum_probs=247.3
Q ss_pred chHHHHHHHhhc--CCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccc--cCCCCC------CCCcccCCC
Q 044441 4 AKPAFCNILETL--KPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNI--INPSLK------YPFFESDFL 73 (333)
Q Consensus 4 ~~~~l~~~l~~~--~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~--~~~~~~------~p~~~~~~~ 73 (333)
+.+.+++++++. +|+|||+|++++|+.++|+++|||++.|+++++.......+.. ..+... .++...+++
T Consensus 90 ~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~ 169 (481)
T PLN02992 90 AVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHTVQRKPLAMPGCE 169 (481)
T ss_pred hHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccccccCCCCcccCCCC
Confidence 457788888764 6899999999999999999999999999999887765433221 001000 011112222
Q ss_pred ccccccccc-ccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhcc------CCCCeeecCcCcCCCCCCC
Q 044441 74 DRENKKINR-FMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSL------MENEIVPVGPLVQESIFKE 146 (333)
Q Consensus 74 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~------~~~~~~~vGpl~~~~~~~~ 146 (333)
......+.. +..+.......+.+....+.. ++.+++|||.+||++++++++.. ..++++.|||+........
T Consensus 170 ~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~-a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~VGPl~~~~~~~~ 248 (481)
T PLN02992 170 PVRFEDTLDAYLVPDEPVYRDFVRHGLAYPK-ADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVYPIGPLCRPIQSSK 248 (481)
T ss_pred ccCHHHhhHhhcCCCcHHHHHHHHHHHhccc-CCEEEEechHHHhHHHHHHHhhccccccccCCceEEecCccCCcCCCc
Confidence 222222332 112111111222233334555 88999999999999999887642 1247999999975321122
Q ss_pred ChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCc--------------chhhhhcCc
Q 044441 147 DDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDE--------------KITIEEALP 212 (333)
Q Consensus 147 ~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~--------------~~~~~~~l~ 212 (333)
.+++|.+||+.+++++||||||||...++.+++++++.+|+.++++|||++..+.+. ..+....+|
T Consensus 249 ~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp 328 (481)
T PLN02992 249 TDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLP 328 (481)
T ss_pred chHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCC
Confidence 456799999999888999999999999999999999999999999999999743110 011123589
Q ss_pred hhHHHHHHhcCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHh-HhCeeeEee
Q 044441 213 QGFAEEIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVV-DIGMGMDVP 291 (333)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~-~~G~g~~l~ 291 (333)
++|.+|+ ...|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++++ +.|+|+.++
T Consensus 329 ~~f~eR~--~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~ 406 (481)
T PLN02992 329 EGFVSRT--HDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSD 406 (481)
T ss_pred HHHHHHh--cCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEec
Confidence 9999999 8889999999999999999999999999999999999999999999999999999999995 889999996
Q ss_pred cCccCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 292 RDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 292 ~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
.. ...++.++|+++|+++|.+++++.+|++|+++++.++
T Consensus 407 ~~--~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~ 445 (481)
T PLN02992 407 DP--KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAE 445 (481)
T ss_pred CC--CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 31 1368999999999999987667899999999999875
No 4
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2e-50 Score=381.94 Aligned_cols=319 Identities=29% Similarity=0.430 Sum_probs=238.8
Q ss_pred chHHHHHHHhhc------CCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhcccc-------CCCCC----CC
Q 044441 4 AKPAFCNILETL------KPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNII-------NPSLK----YP 66 (333)
Q Consensus 4 ~~~~l~~~l~~~------~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~-------~~~~~----~p 66 (333)
+.+.+.+++++. +++|||+|.+++|+.++|+++|||.+.|++++++......+... .+... .+
T Consensus 87 ~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (451)
T PLN02410 87 CQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKEPKGQQN 166 (451)
T ss_pred hHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCccccccCcc
Confidence 345566666542 46999999999999999999999999999998877654332100 01000 00
Q ss_pred CcccCCCcccccccccccCCC-CCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCC-C
Q 044441 67 FFESDFLDRENKKINRFMHPT-ANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESI-F 144 (333)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~-~ 144 (333)
....+++......++.+.... ......+... ..+.. ++.+++|||++||++++++++...++++++|||+...+. .
T Consensus 167 ~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~-~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~~~~~~~ 244 (451)
T PLN02410 167 ELVPEFHPLRCKDFPVSHWASLESIMELYRNT-VDKRT-ASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLHLVASAP 244 (451)
T ss_pred ccCCCCCCCChHHCcchhcCCcHHHHHHHHHH-hhccc-CCEEEEeChHHhhHHHHHHHHhccCCCEEEecccccccCCC
Confidence 011111111111222221100 0001111111 12344 789999999999999999988766678999999964311 1
Q ss_pred ---CCChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHh
Q 044441 145 ---KEDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIER 221 (333)
Q Consensus 145 ---~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 221 (333)
.....+|.+||+.+++++||||||||....+.+++.+++.+|+..+.+|||+++.+.....+....+|++|.+|+
T Consensus 245 ~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~-- 322 (451)
T PLN02410 245 TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKII-- 322 (451)
T ss_pred ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHhc--
Confidence 122346899999998889999999999999999999999999999999999998432111111234899999998
Q ss_pred cCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHh-CeeeEeecCccCCCcC
Q 044441 222 NNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDI-GMGMDVPRDKINQRLR 300 (333)
Q Consensus 222 ~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~-G~g~~l~~~~~~~~~~ 300 (333)
. .|..+.+|+||.++|+|+++++|||||||||++||+++|||||++|+++||+.||+++++. |+|+.+. ..++
T Consensus 323 ~-~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-----~~~~ 396 (451)
T PLN02410 323 S-GRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-----GDLD 396 (451)
T ss_pred c-CCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-----Cccc
Confidence 4 4556779999999999999999999999999999999999999999999999999999887 9999995 4689
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 301 REEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 301 ~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
+++|+++|+++|.++++++||++|+++++.++
T Consensus 397 ~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~ 428 (451)
T PLN02410 397 RGAVERAVKRLMVEEEGEEMRKRAISLKEQLR 428 (451)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 99999999999986557899999999999876
No 5
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2.2e-50 Score=380.61 Aligned_cols=320 Identities=26% Similarity=0.459 Sum_probs=246.6
Q ss_pred cchHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhcccc---CCCCCCCCcccCCCcccccc
Q 044441 3 DAKPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNII---NPSLKYPFFESDFLDRENKK 79 (333)
Q Consensus 3 ~~~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~~~~ 79 (333)
.+.+.+++++++.+|||||+| ++.|+.++|+++|||++.|+++++....+.+.+.. .+.+++|.....+ ....
T Consensus 94 ~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~~~~~~~~~~~~~~pglp~~~~~~---~~~~ 169 (442)
T PLN02208 94 LTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIAHTHVPGGKLGVPPPGYPSSKVLF---REND 169 (442)
T ss_pred HHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHHHHccCccccCCCCCCCCCccccc---CHHH
Confidence 356778888888899999999 57999999999999999999998876553222111 0112222110001 1111
Q ss_pred cccccCCCCCCch-hhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCC-CCCChhHHHHhhcC
Q 044441 80 INRFMHPTANGTL-NKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESI-FKEDDTKIMDWLSQ 157 (333)
Q Consensus 80 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~-~~~~~~~l~~~l~~ 157 (333)
++.+ .+...... ...++.+.... ++.+++|||.+||+++++++++.+.++++.|||+...+. ...+++++.+||+.
T Consensus 170 ~~~~-~~~~~~~~~~~~~~~~~~~~-~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~wLd~ 247 (442)
T PLN02208 170 AHAL-ATLSIFYKRLYHQITTGLKS-CDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPDTSKPLEEQWSHFLSG 247 (442)
T ss_pred cCcc-cccchHHHHHHHHHHhhhcc-CCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcCCCCCCHHHHHHHHhc
Confidence 2211 10011111 12223233445 889999999999999999998877679999999975432 23467889999999
Q ss_pred CCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhh
Q 044441 158 KEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKI 237 (333)
Q Consensus 158 ~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~l 237 (333)
+++++||||||||....+.+++.+++.+++..+.+++|+++.+.+.. +....+|++|.+|+ ...|+++.+|+||.+|
T Consensus 248 ~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~-~~~~~lp~~f~~r~--~~~g~~v~~W~PQ~~i 324 (442)
T PLN02208 248 FPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSS-TVQEGLPEGFEERV--KGRGVVWGGWVQQPLI 324 (442)
T ss_pred CCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccc-chhhhCCHHHHHHH--hcCCcEeeccCCHHHH
Confidence 98889999999999988999999999999888899999988542211 11246899999999 7889999999999999
Q ss_pred ccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhH-hCeeeEeecCccCCCcCHHHHHHHHHHHhcC--
Q 044441 238 LRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVD-IGMGMDVPRDKINQRLRREEVARVIKHVLLQ-- 314 (333)
Q Consensus 238 l~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~-~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~-- 314 (333)
|+|+++++|||||||||++||+++|||||++|+++||+.||+++++ .|+|+.+.+++ .+.+++++|+++|+++|++
T Consensus 325 L~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~-~~~~~~~~l~~ai~~~m~~~~ 403 (442)
T PLN02208 325 LDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREK-TGWFSKESLSNAIKSVMDKDS 403 (442)
T ss_pred hcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEecccc-CCcCcHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999998776 79999997422 1348999999999999975
Q ss_pred cchHHHHHHHHHHHHHhh
Q 044441 315 EEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 315 ~~~~~~~~~a~~l~~~~~ 332 (333)
++++++|++|+++++.+.
T Consensus 404 e~g~~~r~~~~~~~~~~~ 421 (442)
T PLN02208 404 DLGKLVRSNHTKLKEILV 421 (442)
T ss_pred hhHHHHHHHHHHHHHHHh
Confidence 347889999999998764
No 6
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.6e-50 Score=381.30 Aligned_cols=322 Identities=23% Similarity=0.400 Sum_probs=246.3
Q ss_pred chHHHHHHHhhc---C-CCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhcccc--CC--CCC----CCCcccC
Q 044441 4 AKPAFCNILETL---K-PTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNII--NP--SLK----YPFFESD 71 (333)
Q Consensus 4 ~~~~l~~~l~~~---~-pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~--~~--~~~----~p~~~~~ 71 (333)
+.+.+.+++++. + ++|||+|.+++|+..+|+++|||.+.|++++++....+.+... .+ ... .+....+
T Consensus 96 ~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~~~v~iPg 175 (451)
T PLN03004 96 SNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTPGKNLKDIPTVHIPG 175 (451)
T ss_pred hhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccccccccccccCCeecCCC
Confidence 456677777754 3 4999999999999999999999999999999887775544211 01 000 0111122
Q ss_pred CCcccccccccccCCCCCC-chhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCC-CCeeecCcCcCCCC---C-C
Q 044441 72 FLDRENKKINRFMHPTANG-TLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLME-NEIVPVGPLVQESI---F-K 145 (333)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~-~~~~~vGpl~~~~~---~-~ 145 (333)
++.+....++.+....... ...+.+....+.. ++.+++|||++||+++++.++..+. ++++.||||...+. . .
T Consensus 176 ~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~-~~~vl~NTf~eLE~~~l~~l~~~~~~~~v~~vGPl~~~~~~~~~~~ 254 (451)
T PLN03004 176 VPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSK-SSGIIINTFDALENRAIKAITEELCFRNIYPIGPLIVNGRIEDRND 254 (451)
T ss_pred CCCCChHHCchhhcCCchHHHHHHHHHHHhhcc-cCeeeeeeHHHhHHHHHHHHHhcCCCCCEEEEeeeccCcccccccc
Confidence 2222223344333211111 1222333334555 7899999999999999998876432 57999999974321 1 1
Q ss_pred CChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcch---hhhhcCchhHHHHHHhc
Q 044441 146 EDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKI---TIEEALPQGFAEEIERN 222 (333)
Q Consensus 146 ~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~---~~~~~l~~~~~~~~~~~ 222 (333)
..+.+|.+||+.+++++||||||||....+.+++++++.+|+..+++|||++........ +....+|++|.+|+ .
T Consensus 255 ~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~--~ 332 (451)
T PLN03004 255 NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRT--E 332 (451)
T ss_pred chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhc--c
Confidence 123569999999988899999999998899999999999999999999999985321100 11234899999999 8
Q ss_pred CCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhH-hCeeeEeecCccCCCcCH
Q 044441 223 NKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVD-IGMGMDVPRDKINQRLRR 301 (333)
Q Consensus 223 ~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~-~G~g~~l~~~~~~~~~~~ 301 (333)
..|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++ .|+|+.++.++ .+.+++
T Consensus 333 ~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~-~~~~~~ 411 (451)
T PLN03004 333 DKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESE-TGFVSS 411 (451)
T ss_pred CCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCc-CCccCH
Confidence 8899999999999999999999999999999999999999999999999999999999986 59999997421 235799
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 302 EEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 302 ~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
++|+++|+++|+ +++||++|+++++..+
T Consensus 412 e~l~~av~~vm~---~~~~r~~a~~~~~~a~ 439 (451)
T PLN03004 412 TEVEKRVQEIIG---ECPVRERTMAMKNAAE 439 (451)
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHHH
Confidence 999999999998 6899999999999865
No 7
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=4.5e-50 Score=378.99 Aligned_cols=320 Identities=26% Similarity=0.507 Sum_probs=247.6
Q ss_pred cchHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhcccc---CCCCCCCCcccCCCcccccc
Q 044441 3 DAKPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNII---NPSLKYPFFESDFLDRENKK 79 (333)
Q Consensus 3 ~~~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~~~~ 79 (333)
.+.+.++++++..+|||||+|+ ++|+..+|+++|||++.|+++++.....+.++.. .+.+++|.....++... ..
T Consensus 94 ~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~-~~ 171 (446)
T PLN00414 94 LLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAELGFPPPDYPLSKVALRGHD-AN 171 (446)
T ss_pred HHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhhcCCCCCCCCCCcCcCchhh-cc
Confidence 3556777778778899999995 8999999999999999999999887776554321 01222321100011000 00
Q ss_pred cccccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCC---CCChhHHHHhhc
Q 044441 80 INRFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIF---KEDDTKIMDWLS 156 (333)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~---~~~~~~l~~~l~ 156 (333)
+..++. . ....+.+..+.... ++.+++|||.+||+.++++++..++++++.|||+...... ...+++|.+|||
T Consensus 172 ~~~~~~--~-~~~~~~~~~~~~~~-~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD 247 (446)
T PLN00414 172 VCSLFA--N-SHELFGLITKGLKN-CDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLN 247 (446)
T ss_pred cchhhc--c-cHHHHHHHHHhhcc-CCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCcccccCcccHHHHHHHHh
Confidence 111111 0 11223333344555 8899999999999999998877555679999999643211 112457999999
Q ss_pred CCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchh
Q 044441 157 QKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAK 236 (333)
Q Consensus 157 ~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ 236 (333)
.+++++||||||||......+++.+++.+|+..|.+|+|++..+.+.. +....+|++|.+|+ ...++++.+|+||.+
T Consensus 248 ~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~-~~~~~lp~~f~~r~--~~~g~vv~~w~PQ~~ 324 (446)
T PLN00414 248 GFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSS-TVQEALPEGFEERV--KGRGIVWEGWVEQPL 324 (446)
T ss_pred cCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcc-cchhhCChhHHHHh--cCCCeEEeccCCHHH
Confidence 999999999999999999999999999999999999999998643221 12346999999999 788999999999999
Q ss_pred hccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHh-HhCeeeEeecCccCCCcCHHHHHHHHHHHhcC-
Q 044441 237 ILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVV-DIGMGMDVPRDKINQRLRREEVARVIKHVLLQ- 314 (333)
Q Consensus 237 ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~-~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~- 314 (333)
||+|+++++|||||||||++||+++|||||++|+++||+.||++++ +.|+|+.+.+++ .+.+++++|+++++++|.+
T Consensus 325 vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~-~~~~~~~~i~~~v~~~m~~~ 403 (446)
T PLN00414 325 ILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQRED-SGWFSKESLRDTVKSVMDKD 403 (446)
T ss_pred HhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEecccc-CCccCHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999996 579999996421 1358999999999999974
Q ss_pred -cchHHHHHHHHHHHHHhh
Q 044441 315 -EEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 315 -~~~~~~~~~a~~l~~~~~ 332 (333)
+.++++|++|+++++.+.
T Consensus 404 ~e~g~~~r~~a~~~~~~~~ 422 (446)
T PLN00414 404 SEIGNLVKRNHKKLKETLV 422 (446)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 346789999999998764
No 8
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.3e-49 Score=375.04 Aligned_cols=326 Identities=28% Similarity=0.464 Sum_probs=244.7
Q ss_pred cchHHHHHHHhhc--CCCEEEEcCCchhHHHHHHHcCCC-eEEEechhHHHHHhhhccc--cC--CCC--C--CCCcccC
Q 044441 3 DAKPAFCNILETL--KPTLVMYDLFQPWAAEAAYQYHIA-AVLFLTISAVAGSYLLHNI--IN--PSL--K--YPFFESD 71 (333)
Q Consensus 3 ~~~~~l~~~l~~~--~pD~vv~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~--~~--~~~--~--~p~~~~~ 71 (333)
.+.+.++++|++. +|+|||+|.+++|+.++|+++||| .+.++++.++......+.. .. ... . -++...+
T Consensus 92 ~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~vPg 171 (470)
T PLN03015 92 AMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEGEYVDIKEPLKIPG 171 (470)
T ss_pred hchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccccccCCCCCeeeCCC
Confidence 4567788888765 689999999999999999999999 5777777766654332211 00 010 0 0111222
Q ss_pred CCccccccccccc-CCCCCCch-hhHhHHHhhhccCcEEEecchhhhchhHHhhhhccC------CCCeeecCcCcCCCC
Q 044441 72 FLDRENKKINRFM-HPTANGTL-NKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLM------ENEIVPVGPLVQESI 143 (333)
Q Consensus 72 ~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~------~~~~~~vGpl~~~~~ 143 (333)
++......+..++ .+...... ..... +.+.. ++.+++|||.+||+++++.++..+ .++++.|||+.....
T Consensus 172 ~p~l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~-a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~~VGPl~~~~~ 249 (470)
T PLN03015 172 CKPVGPKELMETMLDRSDQQYKECVRSG-LEVPM-SDGVLVNTWEELQGNTLAALREDMELNRVMKVPVYPIGPIVRTNV 249 (470)
T ss_pred CCCCChHHCCHhhcCCCcHHHHHHHHHH-Hhccc-CCEEEEechHHHhHHHHHHHHhhcccccccCCceEEecCCCCCcc
Confidence 3222222333222 11111111 12222 23555 899999999999999998886642 246999999974321
Q ss_pred CCCChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCC-------cchhhhhcCchhHH
Q 044441 144 FKEDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPD-------EKITIEEALPQGFA 216 (333)
Q Consensus 144 ~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-------~~~~~~~~l~~~~~ 216 (333)
....+++|.+||+.+++++||||||||....+.+++.+++.+|+..+++|||+++.+.. +..+....+|++|.
T Consensus 250 ~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~ 329 (470)
T PLN03015 250 HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFL 329 (470)
T ss_pred cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHH
Confidence 11234579999999988899999999999999999999999999999999999974321 01112346899999
Q ss_pred HHHHhcCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHH-hHhCeeeEeecCcc
Q 044441 217 EEIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVV-VDIGMGMDVPRDKI 295 (333)
Q Consensus 217 ~~~~~~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~-~~~G~g~~l~~~~~ 295 (333)
+|+ ...++++.+|+||.++|+|+++++|||||||||++||+++|||||++|+++||+.||+++ +..|+|+.+.+.+.
T Consensus 330 er~--~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~ 407 (470)
T PLN03015 330 DRT--RGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPS 407 (470)
T ss_pred Hhh--ccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEeccccc
Confidence 999 778888999999999999999999999999999999999999999999999999999999 56699999952111
Q ss_pred CCCcCHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHhh
Q 044441 296 NQRLRREEVARVIKHVLLQ--EEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 296 ~~~~~~~~l~~ai~~vl~~--~~~~~~~~~a~~l~~~~~ 332 (333)
...++.++|+++|+++|.+ ++++++|+||++|++.++
T Consensus 408 ~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~ 446 (470)
T PLN03015 408 EKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSE 446 (470)
T ss_pred CCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHH
Confidence 2468999999999999962 568899999999999875
No 9
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.7e-49 Score=372.73 Aligned_cols=316 Identities=30% Similarity=0.523 Sum_probs=241.1
Q ss_pred cchHHHHHHHhhc----CC-CEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCcccc
Q 044441 3 DAKPAFCNILETL----KP-TLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDREN 77 (333)
Q Consensus 3 ~~~~~l~~~l~~~----~p-D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 77 (333)
.+.+.+++++++. +| +|||+|.+++|+.++|+++|||.+.|++++++....+....... ...++...+++....
T Consensus 86 ~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~-~~~~~~~pg~p~l~~ 164 (449)
T PLN02173 86 FGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINN-GSLTLPIKDLPLLEL 164 (449)
T ss_pred hhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhcc-CCccCCCCCCCCCCh
Confidence 3567788888753 56 99999999999999999999999999998776655433211100 011112223333333
Q ss_pred cccccccCCCCCCchhhH---hHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCC--------CCCC-
Q 044441 78 KKINRFMHPTANGTLNKD---RNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQE--------SIFK- 145 (333)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~--------~~~~- 145 (333)
..++.++........... +..+.... ++.+++|||++||++++++++.. .+++.|||+... ....
T Consensus 165 ~dlp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vlvNTf~eLE~~~~~~~~~~--~~v~~VGPl~~~~~~~~~~~~~~~~ 241 (449)
T PLN02173 165 QDLPTFVTPTGSHLAYFEMVLQQFTNFDK-ADFVLVNSFHDLDLHENELLSKV--CPVLTIGPTVPSMYLDQQIKSDNDY 241 (449)
T ss_pred hhCChhhcCCCCchHHHHHHHHHHhhhcc-CCEEEEeCHHHhhHHHHHHHHhc--CCeeEEcccCchhhccccccccccc
Confidence 344443331111111111 11233455 78999999999999999888653 369999999631 0000
Q ss_pred -------CChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHH
Q 044441 146 -------EDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEE 218 (333)
Q Consensus 146 -------~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 218 (333)
..+++|.+||+.++++++|||||||....+.+++.+++.+| .+.+|+|++.... ...+|++|.+|
T Consensus 242 ~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~------~~~lp~~~~~~ 313 (449)
T PLN02173 242 DLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASE------ESKLPPGFLET 313 (449)
T ss_pred cccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccc------hhcccchHHHh
Confidence 12346999999999899999999999989999999999999 7788999998431 13488899888
Q ss_pred HHhcCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHh-CeeeEeecCccCC
Q 044441 219 IERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDI-GMGMDVPRDKINQ 297 (333)
Q Consensus 219 ~~~~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~-G~g~~l~~~~~~~ 297 (333)
. ...|+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++. |+|+.+..++...
T Consensus 314 ~--~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~ 391 (449)
T PLN02173 314 V--DKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESG 391 (449)
T ss_pred h--cCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCC
Confidence 7 678899999999999999999999999999999999999999999999999999999999986 9999986432123
Q ss_pred CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 298 RLRREEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 298 ~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
.++.++|+++|+++|.+++++++|+||++++++++
T Consensus 392 ~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~ 426 (449)
T PLN02173 392 IAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAV 426 (449)
T ss_pred cccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 47999999999999987667899999999999876
No 10
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.3e-49 Score=373.54 Aligned_cols=319 Identities=25% Similarity=0.397 Sum_probs=239.4
Q ss_pred hHHHHHHHhhc----CC-CEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhcccc--CCCCCC-------CCccc
Q 044441 5 KPAFCNILETL----KP-TLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNII--NPSLKY-------PFFES 70 (333)
Q Consensus 5 ~~~l~~~l~~~----~p-D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~--~~~~~~-------p~~~~ 70 (333)
.+.+.+++++. +| +|||+|.+++|+.++|+++|||.+.|+++++.....+.+... .+.... ++...
T Consensus 99 ~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP 178 (468)
T PLN02207 99 RNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHSKDTSVFVRNSEEMLSIP 178 (468)
T ss_pred HHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhccccccccCcCCCCCeEECC
Confidence 34456666542 34 899999999999999999999999999999877664433211 111111 11122
Q ss_pred CC-CcccccccccccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhc-cCCCCeeecCcCcCCCC--CC-
Q 044441 71 DF-LDRENKKINRFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPS-LMENEIVPVGPLVQESI--FK- 145 (333)
Q Consensus 71 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~-~~~~~~~~vGpl~~~~~--~~- 145 (333)
++ +.+....++.++.... ....+.+....+.+ ++.+++|||++||+++++.++. ...++++.|||+...+. ..
T Consensus 179 gl~~~l~~~dlp~~~~~~~-~~~~~~~~~~~~~~-~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~~~ 256 (468)
T PLN02207 179 GFVNPVPANVLPSALFVED-GYDAYVKLAILFTK-ANGILVNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKAQPHPE 256 (468)
T ss_pred CCCCCCChHHCcchhcCCc-cHHHHHHHHHhccc-CCEEEEEchHHHhHHHHHHHHhccCCCcEEEecCCcccccCCCCc
Confidence 32 2222333444333211 12222233334555 8999999999999999888754 23468999999974321 11
Q ss_pred ---CChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhc
Q 044441 146 ---EDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERN 222 (333)
Q Consensus 146 ---~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 222 (333)
..++++.+||+.++++++|||||||....+.+++++++.+|+..+++|||+++.... .....+|++|.+|+ .
T Consensus 257 ~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~---~~~~~lp~~f~er~--~ 331 (468)
T PLN02207 257 QDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEV---TNDDLLPEGFLDRV--S 331 (468)
T ss_pred cccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCc---cccccCCHHHHhhc--C
Confidence 123679999999988899999999999999999999999999999999999985321 11235889999887 4
Q ss_pred CCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhH-hCeeeEeecCc---cCCC
Q 044441 223 NKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVD-IGMGMDVPRDK---INQR 298 (333)
Q Consensus 223 ~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~-~G~g~~l~~~~---~~~~ 298 (333)
.|..+.+|+||.++|+|+++++|||||||||++||+++|||||++|+++||+.||+++++ .|+|+.+..+. ..+.
T Consensus 332 -~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~ 410 (468)
T PLN02207 332 -GRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEI 410 (468)
T ss_pred -CCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCc
Confidence 455777999999999999999999999999999999999999999999999999998777 79999874210 0134
Q ss_pred cCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 299 LRREEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 299 ~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
++.++|+++|+++|.+ ++++||+||++++++++
T Consensus 411 v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~ 443 (468)
T PLN02207 411 VNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQ 443 (468)
T ss_pred ccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHH
Confidence 6999999999999963 37899999999999876
No 11
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=9e-49 Score=374.03 Aligned_cols=327 Identities=25% Similarity=0.409 Sum_probs=247.0
Q ss_pred cchHHHHHHHhhc--CCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhcccc--CC----CCC--CCCcccCC
Q 044441 3 DAKPAFCNILETL--KPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNII--NP----SLK--YPFFESDF 72 (333)
Q Consensus 3 ~~~~~l~~~l~~~--~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~--~~----~~~--~p~~~~~~ 72 (333)
.+.+.+++++++. +++|||+|.+++|+.++|+++|||++.|+++++.....+.+... .. ... .++...++
T Consensus 95 ~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPGl 174 (480)
T PLN00164 95 LHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEEVAVEFEEMEGAVDVPGL 174 (480)
T ss_pred hhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhcccccCcccccCcceecCCC
Confidence 3566788888765 45999999999999999999999999999999887775544321 00 011 01111222
Q ss_pred CcccccccccccCCCC-CCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccC------CCCeeecCcCcCC---C
Q 044441 73 LDRENKKINRFMHPTA-NGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLM------ENEIVPVGPLVQE---S 142 (333)
Q Consensus 73 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~------~~~~~~vGpl~~~---~ 142 (333)
+......++.+..... .....+....+.+.. ++.+++|||.+||+++++.++... .++++.|||+... +
T Consensus 175 p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~-~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~ 253 (480)
T PLN00164 175 PPVPASSLPAPVMDKKSPNYAWFVYHGRRFME-AAGIIVNTAAELEPGVLAAIADGRCTPGRPAPTVYPIGPVISLAFTP 253 (480)
T ss_pred CCCChHHCCchhcCCCcHHHHHHHHHHHhhhh-cCEEEEechHHhhHHHHHHHHhccccccCCCCceEEeCCCccccccC
Confidence 2222223443332111 111112222233455 889999999999999999887642 1479999999632 1
Q ss_pred CCCCChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCc------chhhhhcCchhHH
Q 044441 143 IFKEDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDE------KITIEEALPQGFA 216 (333)
Q Consensus 143 ~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~------~~~~~~~l~~~~~ 216 (333)
.....+++|.+||+.++++++|||||||....+.+++.+++.+|+..+++|||+++.+... +.+....+|++|.
T Consensus 254 ~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~ 333 (480)
T PLN00164 254 PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFL 333 (480)
T ss_pred CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHH
Confidence 1123456899999999889999999999988899999999999999999999999854211 1111235899999
Q ss_pred HHHHhcCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHh-HhCeeeEeecCcc
Q 044441 217 EEIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVV-DIGMGMDVPRDKI 295 (333)
Q Consensus 217 ~~~~~~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~-~~G~g~~l~~~~~ 295 (333)
+|. ...++++.+|+||.+||.|+++++|||||||||++||+++|||||++|+++||+.||+++. +.|+|+.+..+++
T Consensus 334 ~~~--~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~ 411 (480)
T PLN00164 334 ERT--KGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRK 411 (480)
T ss_pred HHh--cCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccc
Confidence 999 7889999899999999999999999999999999999999999999999999999999875 5799999953211
Q ss_pred -CCCcCHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHhh
Q 044441 296 -NQRLRREEVARVIKHVLLQE--EGKQIRRKAKEMSERMR 332 (333)
Q Consensus 296 -~~~~~~~~l~~ai~~vl~~~--~~~~~~~~a~~l~~~~~ 332 (333)
.+.++.++|+++|+++|.++ +++.+|++|+++++.++
T Consensus 412 ~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~ 451 (480)
T PLN00164 412 RDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACR 451 (480)
T ss_pred cCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 13479999999999999753 37889999999999876
No 12
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=5.8e-49 Score=373.43 Aligned_cols=323 Identities=27% Similarity=0.473 Sum_probs=242.8
Q ss_pred chHHHHHHHhhc----CC-CEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccC--C-C----CCCCCcccC
Q 044441 4 AKPAFCNILETL----KP-TLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIIN--P-S----LKYPFFESD 71 (333)
Q Consensus 4 ~~~~l~~~l~~~----~p-D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~--~-~----~~~p~~~~~ 71 (333)
+.+.+.+++++. +| +|||+|.+++|+.++|+++|||.+.|++++++....+.+.... + + ...++...+
T Consensus 99 ~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg 178 (480)
T PLN02555 99 GKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLVPFPTETEPEIDVQLPC 178 (480)
T ss_pred hhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCCCcccccCCCceeecCC
Confidence 455666677642 45 9999999999999999999999999999988877754433111 1 0 011122233
Q ss_pred CCcccccccccccCCCCCC---chhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCC----C-
Q 044441 72 FLDRENKKINRFMHPTANG---TLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQES----I- 143 (333)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~----~- 143 (333)
++.+....++.++...... ...+.+..+.... ++.+++|||.+||+++++.++... +++.|||+.... .
T Consensus 179 lp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~-a~~vlvNTf~eLE~~~~~~l~~~~--~v~~iGPl~~~~~~~~~~ 255 (480)
T PLN02555 179 MPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDK-PFCILIDTFQELEKEIIDYMSKLC--PIKPVGPLFKMAKTPNSD 255 (480)
T ss_pred CCCcCHhhCcccccCCCCchHHHHHHHHHHHhccc-CCEEEEEchHHHhHHHHHHHhhCC--CEEEeCcccCcccccccc
Confidence 3333333344433311111 1111122223445 789999999999999998886643 399999996421 1
Q ss_pred --C--CCChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHH
Q 044441 144 --F--KEDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEI 219 (333)
Q Consensus 144 --~--~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (333)
. ...+++|.+||+.++++++|||||||....+.+++.+++.+|+..+++|||+++............+|+++.++.
T Consensus 256 ~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~ 335 (480)
T PLN02555 256 VKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKA 335 (480)
T ss_pred ccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhhhc
Confidence 0 123567999999998888999999999989999999999999999999999987431110011235888888776
Q ss_pred HhcCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHh-CeeeEeecCc-cCC
Q 044441 220 ERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDI-GMGMDVPRDK-INQ 297 (333)
Q Consensus 220 ~~~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~-G~g~~l~~~~-~~~ 297 (333)
..|..+.+|+||.+||.|+++++|||||||||++||+++|||||++|+++||+.||+++++. |+|+.+.+++ ...
T Consensus 336 ---~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~ 412 (480)
T PLN02555 336 ---GDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENK 412 (480)
T ss_pred ---CCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccC
Confidence 45677789999999999999999999999999999999999999999999999999999887 9999995321 124
Q ss_pred CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 298 RLRREEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 298 ~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
.++.++|.++|+++|.+++++++|+||++|++.++
T Consensus 413 ~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~ 447 (480)
T PLN02555 413 LITREEVAECLLEATVGEKAAELKQNALKWKEEAE 447 (480)
T ss_pred cCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 68999999999999987668899999999999865
No 13
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.6e-48 Score=370.13 Aligned_cols=317 Identities=28% Similarity=0.457 Sum_probs=237.0
Q ss_pred chHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhcccc--CCCCCC-----CCcccCCCccc
Q 044441 4 AKPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNII--NPSLKY-----PFFESDFLDRE 76 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~--~~~~~~-----p~~~~~~~~~~ 76 (333)
+.+.+++++++.+|||||+|.+++|+..+|+++|||.+.|++.++.......+... .+.... +....+++...
T Consensus 91 ~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pgl~~~~ 170 (456)
T PLN02210 91 GAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLEDLNQTVELPALPLLE 170 (456)
T ss_pred hhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcccccCCeeeCCCCCCCC
Confidence 45678888888899999999999999999999999999998887766554432211 010000 01111222222
Q ss_pred ccccccccCCCCCCc---hhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCC-----CCC----
Q 044441 77 NKKINRFMHPTANGT---LNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQE-----SIF---- 144 (333)
Q Consensus 77 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~-----~~~---- 144 (333)
...+..++.. .... ....++.+.... ++.+++|||.+||+++++.++.. +++++|||++.. ...
T Consensus 171 ~~dl~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~vlvNTf~eLE~~~~~~l~~~--~~v~~VGPl~~~~~~~~~~~~~~~ 246 (456)
T PLN02210 171 VRDLPSFMLP-SGGAHFNNLMAEFADCLRY-VKWVLVNSFYELESEIIESMADL--KPVIPIGPLVSPFLLGDDEEETLD 246 (456)
T ss_pred hhhCChhhhc-CCchHHHHHHHHHHHhccc-CCEEEEeCHHHHhHHHHHHHhhc--CCEEEEcccCchhhcCcccccccc
Confidence 2233332221 1111 122234333444 78999999999999999988763 479999999631 110
Q ss_pred ------CCChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHH
Q 044441 145 ------KEDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEE 218 (333)
Q Consensus 145 ------~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 218 (333)
...+++|.+||+.++++++|||||||....+.+++++++.+|+..|.+|||+++..... ..+..+.++
T Consensus 247 ~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~------~~~~~~~~~ 320 (456)
T PLN02210 247 GKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKA------QNVQVLQEM 320 (456)
T ss_pred cccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCccc------cchhhHHhh
Confidence 02345689999999888999999999988899999999999999999999999743210 122344444
Q ss_pred HHhcCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhH-hCeeeEeecCccCC
Q 044441 219 IERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVD-IGMGMDVPRDKINQ 297 (333)
Q Consensus 219 ~~~~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~-~G~g~~l~~~~~~~ 297 (333)
. ..++..+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++ .|+|+.+..++..+
T Consensus 321 ~--~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~ 398 (456)
T PLN02210 321 V--KEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDG 398 (456)
T ss_pred c--cCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCC
Confidence 3 22445677999999999999999999999999999999999999999999999999999998 79999996421123
Q ss_pred CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 298 RLRREEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 298 ~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
.+++++|+++|+++|.+++++++|+||++|++.++
T Consensus 399 ~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~ 433 (456)
T PLN02210 399 ELKVEEVERCIEAVTEGPAAADIRRRAAELKHVAR 433 (456)
T ss_pred cCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 68999999999999987667789999999999875
No 14
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=9.5e-49 Score=372.87 Aligned_cols=322 Identities=27% Similarity=0.452 Sum_probs=242.7
Q ss_pred chHHHHHHHhh--cCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccC-CC----CC--CCCc---ccC
Q 044441 4 AKPAFCNILET--LKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIIN-PS----LK--YPFF---ESD 71 (333)
Q Consensus 4 ~~~~l~~~l~~--~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~-~~----~~--~p~~---~~~ 71 (333)
+.+.+.+++++ .+|+|||+|.+++|+.++|+++|||++.|++++++....+.+.... +. .. .++. ..+
T Consensus 100 ~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg 179 (477)
T PLN02863 100 LYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKINPDDQNEILSFSKIPN 179 (477)
T ss_pred hHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccccccccccccccccCCCCC
Confidence 45667777776 3579999999999999999999999999999999887755443211 10 00 0110 111
Q ss_pred CCcccccccccccCCCCCCch---hhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCC-CCeeecCcCcCCCC-C--
Q 044441 72 FLDRENKKINRFMHPTANGTL---NKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLME-NEIVPVGPLVQESI-F-- 144 (333)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~-~~~~~vGpl~~~~~-~-- 144 (333)
++......++.++........ ...+....... ++.+++|||++||++++++++..+. ++++.|||+..... .
T Consensus 180 ~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vlvNTf~eLE~~~~~~~~~~~~~~~v~~IGPL~~~~~~~~~ 258 (477)
T PLN02863 180 CPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIA-SWGLVVNSFTELEGIYLEHLKKELGHDRVWAVGPILPLSGEKSG 258 (477)
T ss_pred CCCcChHhCchhhhccCccchHHHHHHHHHhhhcc-CCEEEEecHHHHHHHHHHHHHhhcCCCCeEEeCCCccccccccc
Confidence 121222223332221101111 11111122334 6789999999999999999887654 57999999964211 0
Q ss_pred -----C--C-ChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHH
Q 044441 145 -----K--E-DDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFA 216 (333)
Q Consensus 145 -----~--~-~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 216 (333)
. . .++++.+||+.++++++|||||||....+.+++.+++.+|+..|++|||+++...+.. .....+|++|.
T Consensus 259 ~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~-~~~~~lp~~~~ 337 (477)
T PLN02863 259 LMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEE-SDYSNIPSGFE 337 (477)
T ss_pred ccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccc-cchhhCCHHHH
Confidence 0 1 2467999999998899999999999988999999999999999999999998542211 11235889999
Q ss_pred HHHHhcCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhH-hCeeeEeecCcc
Q 044441 217 EEIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVD-IGMGMDVPRDKI 295 (333)
Q Consensus 217 ~~~~~~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~-~G~g~~l~~~~~ 295 (333)
+|+ ...|+++.+|+||.++|+|+++++|||||||||++||+++|||||++|+++||+.||+++.+ .|+|+.+.+++
T Consensus 338 ~r~--~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~- 414 (477)
T PLN02863 338 DRV--AGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGA- 414 (477)
T ss_pred HHh--ccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCC-
Confidence 998 78899999999999999999999999999999999999999999999999999999999765 69999995421
Q ss_pred CCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 296 NQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 296 ~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
...++.+++.++|+++|.+ +++||+||+++++.++
T Consensus 415 ~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~ 449 (477)
T PLN02863 415 DTVPDSDELARVFMESVSE--NQVERERAKELRRAAL 449 (477)
T ss_pred CCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHH
Confidence 2356899999999999942 6899999999999865
No 15
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-48 Score=371.47 Aligned_cols=325 Identities=26% Similarity=0.450 Sum_probs=241.9
Q ss_pred chHHHHHHHhh--cCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhcccc------CCCCCCCCcccCCCc-
Q 044441 4 AKPAFCNILET--LKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNII------NPSLKYPFFESDFLD- 74 (333)
Q Consensus 4 ~~~~l~~~l~~--~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~------~~~~~~p~~~~~~~~- 74 (333)
+.+.+.+++++ .+|+|||+|.+++|+..+|+++|||.+.|++++++....+..... .+....++...+++.
T Consensus 105 l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~p~~ 184 (491)
T PLN02534 105 LQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAHLSVSSDSEPFVVPGMPQS 184 (491)
T ss_pred hHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcccccCCCCCceeecCCCCcc
Confidence 45777777775 357999999999999999999999999999888877654321110 011112222223221
Q ss_pred --ccccccccccCCCCCCch-hhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCC--------
Q 044441 75 --RENKKINRFMHPTANGTL-NKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESI-------- 143 (333)
Q Consensus 75 --~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~-------- 143 (333)
.....+..++.. ..... ....+.+.... ++.+++|||.+||+++++.++..++++++.|||+.....
T Consensus 185 ~~l~~~dlp~~~~~-~~~~~~~~~~~~~~~~~-a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~ 262 (491)
T PLN02534 185 IEITRAQLPGAFVS-LPDLDDVRNKMREAEST-AFGVVVNSFNELEHGCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFER 262 (491)
T ss_pred ccccHHHCChhhcC-cccHHHHHHHHHhhccc-CCEEEEecHHHhhHHHHHHHHhhcCCcEEEECccccccccccccccc
Confidence 111122222210 11111 12222222223 678999999999999999988766678999999964210
Q ss_pred C--CC-ChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHH
Q 044441 144 F--KE-DDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIE 220 (333)
Q Consensus 144 ~--~~-~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (333)
. .. .+++|.+||+.+++++||||||||......+++.+++.+|+..+.+|||++..+..........+|++|.++.
T Consensus 263 ~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~- 341 (491)
T PLN02534 263 GNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERI- 341 (491)
T ss_pred CCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhh-
Confidence 0 01 2356999999999899999999999999999999999999999999999998432111111124689999888
Q ss_pred hcCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHh-CeeeEeecC------
Q 044441 221 RNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDI-GMGMDVPRD------ 293 (333)
Q Consensus 221 ~~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~-G~g~~l~~~------ 293 (333)
...|+++.+|+||.++|+|+++++|||||||||++||+++|||||++|+++||+.||+++++. |+|+.+...
T Consensus 342 -~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~ 420 (491)
T PLN02534 342 -KGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWG 420 (491)
T ss_pred -ccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccccccccc
Confidence 788999999999999999999999999999999999999999999999999999999999754 999988411
Q ss_pred ccC--C-CcCHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHhh
Q 044441 294 KIN--Q-RLRREEVARVIKHVLL--QEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 294 ~~~--~-~~~~~~l~~ai~~vl~--~~~~~~~~~~a~~l~~~~~ 332 (333)
++. + .+++++|+++|+++|. +++++++|+||++|+++++
T Consensus 421 ~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~ 464 (491)
T PLN02534 421 DEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMAR 464 (491)
T ss_pred ccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 001 1 4899999999999997 4557899999999999876
No 16
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.3e-48 Score=371.60 Aligned_cols=324 Identities=31% Similarity=0.522 Sum_probs=239.5
Q ss_pred chHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhcccc-CCCCCC-----CCcccCCCc-cc
Q 044441 4 AKPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNII-NPSLKY-----PFFESDFLD-RE 76 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~-~~~~~~-----p~~~~~~~~-~~ 76 (333)
+.+.+++++++.+|||||+|.+++|+..+|+++|||++.|++++++.......... .+.... +....+++. ..
T Consensus 110 l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~ 189 (482)
T PLN03007 110 FKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCIRVHKPQKKVASSSEPFVIPDLPGDIV 189 (482)
T ss_pred HHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHHHhcccccccCCCCceeeCCCCCCccc
Confidence 55667777777789999999999999999999999999999987765543221100 010000 111112211 00
Q ss_pred --ccccccccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCC--------CCC
Q 044441 77 --NKKINRFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESI--------FKE 146 (333)
Q Consensus 77 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~--------~~~ 146 (333)
...++.. .+............+...+ .+.+++|||++||+++.+.++.....++++|||+..... ...
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~vl~Nt~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~ 267 (482)
T PLN03007 190 ITEEQINDA-DEESPMGKFMKEVRESEVK-SFGVLVNSFYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKK 267 (482)
T ss_pred cCHHhcCCC-CCchhHHHHHHHHHhhccc-CCEEEEECHHHHHHHHHHHHHhccCCCEEEEccccccccccccccccCCc
Confidence 0001110 0000011122333344555 789999999999999888887666567999999853210 001
Q ss_pred ---ChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcC
Q 044441 147 ---DDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNN 223 (333)
Q Consensus 147 ---~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 223 (333)
.+.+|.+||+.++++++|||||||......+++.+++.+|+..+++|||+++..... .+....+|++|.+|. .+
T Consensus 268 ~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~-~~~~~~lp~~~~~r~--~~ 344 (482)
T PLN03007 268 ANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQ-GEKEEWLPEGFEERT--KG 344 (482)
T ss_pred cccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcc-cchhhcCCHHHHHHh--cc
Confidence 246799999999888999999999988889999999999999999999999864221 011235899999999 88
Q ss_pred CCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHh-CeeeEeecCc----cCCC
Q 044441 224 KGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDI-GMGMDVPRDK----INQR 298 (333)
Q Consensus 224 ~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~-G~g~~l~~~~----~~~~ 298 (333)
.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++. ++|+.+..++ +.+.
T Consensus 345 ~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~ 424 (482)
T PLN03007 345 KGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDF 424 (482)
T ss_pred CCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCc
Confidence 9999999999999999999999999999999999999999999999999999999988742 4444442110 1356
Q ss_pred cCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 299 LRREEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 299 ~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
+++++|+++|+++|.++++++||+||+++++.++
T Consensus 425 ~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~ 458 (482)
T PLN03007 425 ISREKVEKAVREVIVGEEAEERRLRAKKLAEMAK 458 (482)
T ss_pred ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 8999999999999986557799999999999876
No 17
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=5.6e-48 Score=364.41 Aligned_cols=319 Identities=26% Similarity=0.474 Sum_probs=235.1
Q ss_pred chHHHHHHHhhc----CC-CEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccc
Q 044441 4 AKPAFCNILETL----KP-TLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENK 78 (333)
Q Consensus 4 ~~~~l~~~l~~~----~p-D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 78 (333)
+.+.+.+++++. +| +|||+|.+++|+.++|+++|||.+.|++++++..+...+....... ++...+++.....
T Consensus 89 ~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~--~~~iPglp~l~~~ 166 (455)
T PLN02152 89 GDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGNNS--VFEFPNLPSLEIR 166 (455)
T ss_pred ccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccCCC--eeecCCCCCCchH
Confidence 456777777653 34 9999999999999999999999999999998877755443211110 1112223222233
Q ss_pred ccccccCCCC-CC--chhhHhHHHhhhc-cCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCC----CC--C---
Q 044441 79 KINRFMHPTA-NG--TLNKDRNLKAFEL-SCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQES----IF--K--- 145 (333)
Q Consensus 79 ~~~~~~~~~~-~~--~~~~~~~~~~~~~-~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~----~~--~--- 145 (333)
.++.++.... .. ...+.+..+.+.. .++.+++|||++||+++++.++. .+++.|||+.... .. .
T Consensus 167 dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~~v~~VGPL~~~~~~~~~~~~~~~~ 243 (455)
T PLN02152 167 DLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---IEMVAVGPLLPAEIFTGSESGKDLS 243 (455)
T ss_pred HCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---CCEEEEcccCccccccccccCcccc
Confidence 3444432111 11 1122233332322 14689999999999999988864 2699999996421 00 1
Q ss_pred --CChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcc----hhh--hhcCchhHHH
Q 044441 146 --EDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEK----ITI--EEALPQGFAE 217 (333)
Q Consensus 146 --~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~--~~~l~~~~~~ 217 (333)
+.+.++.+||+.+++++||||||||....+.+++++++.+|+.++.+|||++..+.... .+. ...+|++|.+
T Consensus 244 ~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e 323 (455)
T PLN02152 244 VRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRH 323 (455)
T ss_pred ccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHH
Confidence 12357999999998889999999999999999999999999999999999998532110 000 1124688888
Q ss_pred HHHhcCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHh-CeeeEeecCccC
Q 044441 218 EIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDI-GMGMDVPRDKIN 296 (333)
Q Consensus 218 ~~~~~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~-G~g~~l~~~~~~ 296 (333)
|. .+|..+.+|+||.+||+|+++++|||||||||++||+++|||+|++|+++||+.||+++++. |+|+.+..+. .
T Consensus 324 ~~---~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~-~ 399 (455)
T PLN02152 324 EL---EEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENS-E 399 (455)
T ss_pred hc---cCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCc-C
Confidence 76 45567779999999999999999999999999999999999999999999999999999984 6666664321 2
Q ss_pred CCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 297 QRLRREEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 297 ~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
+.++.++|+++|+++|++ ++.++|+||+++++.++
T Consensus 400 ~~~~~e~l~~av~~vm~~-~~~~~r~~a~~~~~~~~ 434 (455)
T PLN02152 400 GLVERGEIRRCLEAVMEE-KSVELRESAEKWKRLAI 434 (455)
T ss_pred CcCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHH
Confidence 357999999999999973 25679999999998775
No 18
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=9.8e-48 Score=367.96 Aligned_cols=308 Identities=29% Similarity=0.449 Sum_probs=229.8
Q ss_pred CEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhcccc-C-C---C-CCCC-----CcccCCC-cccccccccccC
Q 044441 18 TLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNII-N-P---S-LKYP-----FFESDFL-DRENKKINRFMH 85 (333)
Q Consensus 18 D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~-~-~---~-~~~p-----~~~~~~~-~~~~~~~~~~~~ 85 (333)
+|||+|.+++|+.++|+++|||++.|++++++......+... . + + ..++ +...+++ ......++.++.
T Consensus 114 ~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~ 193 (481)
T PLN02554 114 AGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLL 193 (481)
T ss_pred EEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhccccccCccccCCCCceeECCCCCCCCCHHHCCCccc
Confidence 899999999999999999999999999999988775544321 0 0 0 0111 1111111 111112222222
Q ss_pred CCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhcc--CCCCeeecCcCcC-CCC-C---CCChhHHHHhhcCC
Q 044441 86 PTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSL--MENEIVPVGPLVQ-ESI-F---KEDDTKIMDWLSQK 158 (333)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~--~~~~~~~vGpl~~-~~~-~---~~~~~~l~~~l~~~ 158 (333)
. +.....+.+..+.+.. ++.+++||+.+||..+...+... ..++++.|||+.. .+. . ...++++.+||+.+
T Consensus 194 ~-~~~~~~~~~~~~~~~~-~~gvlvNt~~eLe~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~ 271 (481)
T PLN02554 194 S-KEWLPLFLAQARRFRE-MKGILVNTVAELEPQALKFFSGSSGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQ 271 (481)
T ss_pred C-HHHHHHHHHHHHhccc-CCEEEEechHHHhHHHHHHHHhcccCCCCEEEeCCCccccccccccccccchHHHHHHhcC
Confidence 1 1111112222334555 78999999999999988877642 2358999999942 221 1 23456899999999
Q ss_pred CCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCC--------cchhhhhcCchhHHHHHHhcCCCeEEec
Q 044441 159 EPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPD--------EKITIEEALPQGFAEEIERNNKGMLVQG 230 (333)
Q Consensus 159 ~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 230 (333)
+++++|||||||....+.+++.+++.+|+..|++|||+++.... ...+....+|++|.+|. . +|+.+.+
T Consensus 272 ~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~--~-~~g~v~~ 348 (481)
T PLN02554 272 PPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRT--K-DIGKVIG 348 (481)
T ss_pred CCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHh--c-cCceEEe
Confidence 88889999999998889999999999999999999999975321 00111234789999887 4 4567779
Q ss_pred cccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHH-HHhHhCeeeEeecCc-------cCCCcCHH
Q 044441 231 WVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAK-VVVDIGMGMDVPRDK-------INQRLRRE 302 (333)
Q Consensus 231 ~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~-~~~~~G~g~~l~~~~-------~~~~~~~~ 302 (333)
|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+ ++++.|+|+.+.++. ....++++
T Consensus 349 W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e 428 (481)
T PLN02554 349 WAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAE 428 (481)
T ss_pred eCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHH
Confidence 9999999999999999999999999999999999999999999999995 578889999996310 12468999
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 303 EVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 303 ~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
+|+++|+++|.+ +++||+||++++++++
T Consensus 429 ~l~~av~~vm~~--~~~~r~~a~~l~~~~~ 456 (481)
T PLN02554 429 EIERGIRCLMEQ--DSDVRKRVKEMSEKCH 456 (481)
T ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Confidence 999999999963 4899999999999876
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.8e-47 Score=365.68 Aligned_cols=309 Identities=29% Similarity=0.463 Sum_probs=228.7
Q ss_pred CCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccc--cCC-CCC-------CCCcccCC-CcccccccccccC
Q 044441 17 PTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNI--INP-SLK-------YPFFESDF-LDRENKKINRFMH 85 (333)
Q Consensus 17 pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~--~~~-~~~-------~p~~~~~~-~~~~~~~~~~~~~ 85 (333)
++|||+|.+++|+.++|+++|||.+.|++++++....+.+.. ... ... .++...++ +.+....++.+..
T Consensus 119 v~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~ 198 (475)
T PLN02167 119 VAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLF 198 (475)
T ss_pred eEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHHhccccccccccCCCCCeeECCCCCCCCChhhCchhhh
Confidence 499999999999999999999999999999987766443221 000 000 01111122 1111112222221
Q ss_pred CCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccC--CCCeeecCcCcCCCC----C--CCChhHHHHhhcC
Q 044441 86 PTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLM--ENEIVPVGPLVQESI----F--KEDDTKIMDWLSQ 157 (333)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~--~~~~~~vGpl~~~~~----~--~~~~~~l~~~l~~ 157 (333)
. ......+.+..+.... ++.+++|||.+||++++++++... -+++++|||+..... . ...+.++.+||+.
T Consensus 199 ~-~~~~~~~~~~~~~~~~-a~~vlvNTf~eLE~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~ 276 (475)
T PLN02167 199 M-KESYEAWVEIAERFPE-AKGILVNSFTELEPNAFDYFSRLPENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDD 276 (475)
T ss_pred C-cchHHHHHHHHHhhcc-cCEeeeccHHHHHHHHHHHHHhhcccCCeeEEeccccccccccCCCCCcchhHHHHHHHhc
Confidence 1 0111112222233455 889999999999999998886531 147999999965311 1 1123679999999
Q ss_pred CCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhh
Q 044441 158 KEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKI 237 (333)
Q Consensus 158 ~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~l 237 (333)
++++++|||||||....+.+++.+++.+|+..+++|||+++.......+....+|++|.+|+ ...+ ++.+|+||.+|
T Consensus 277 ~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~--~~rg-~v~~w~PQ~~i 353 (475)
T PLN02167 277 QPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRV--MGRG-LVCGWAPQVEI 353 (475)
T ss_pred CCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHh--ccCe-eeeccCCHHHH
Confidence 98889999999999888999999999999999999999998542211111245899999988 5444 56699999999
Q ss_pred ccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHH-HhHhCeeeEeecC---ccCCCcCHHHHHHHHHHHhc
Q 044441 238 LRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKV-VVDIGMGMDVPRD---KINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 238 l~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~-~~~~G~g~~l~~~---~~~~~~~~~~l~~ai~~vl~ 313 (333)
|+|+++++|||||||||++||+++|||||++|+++||+.||++ +++.|+|+.+... ++...+++++|+++|+++|.
T Consensus 354 L~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~ 433 (475)
T PLN02167 354 LAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMD 433 (475)
T ss_pred hcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999976 6788999999642 10135799999999999997
Q ss_pred CcchHHHHHHHHHHHHHhh
Q 044441 314 QEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 314 ~~~~~~~~~~a~~l~~~~~ 332 (333)
+ ++.||+||+++++.++
T Consensus 434 ~--~~~~r~~a~~~~~~~~ 450 (475)
T PLN02167 434 G--EDVPRKKVKEIAEAAR 450 (475)
T ss_pred C--CHHHHHHHHHHHHHHH
Confidence 4 2489999999999875
No 20
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=6.8e-47 Score=358.57 Aligned_cols=310 Identities=22% Similarity=0.386 Sum_probs=232.9
Q ss_pred chHHHHHHHhhcC----CCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhcccc---C---CCCCCC-----C-
Q 044441 4 AKPAFCNILETLK----PTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNII---N---PSLKYP-----F- 67 (333)
Q Consensus 4 ~~~~l~~~l~~~~----pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~---~---~~~~~p-----~- 67 (333)
+.+.+.+++++.. ++|||+|.+++|+.++|+++|||++.|+++++.......+... . +..+.+ .
T Consensus 87 ~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (448)
T PLN02562 87 MPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCPRQLEKIC 166 (448)
T ss_pred chHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 5677778887642 3799999999999999999999999999988776554322210 0 000001 0
Q ss_pred cccCCCcccccccccccCCC---CCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhc----cCCCCeeecCcCcC
Q 044441 68 FESDFLDRENKKINRFMHPT---ANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPS----LMENEIVPVGPLVQ 140 (333)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~----~~~~~~~~vGpl~~ 140 (333)
...+++......+..++... ......+.+..+.... ++.+++|||.+||+++++.... ...++++.|||+..
T Consensus 167 ~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v~~iGpl~~ 245 (448)
T PLN02562 167 VLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKS-LRWILMNSFKDEEYDDVKNHQASYNNGQNPQILQIGPLHN 245 (448)
T ss_pred cCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhcccc-CCEEEEcChhhhCHHHHHHHHhhhccccCCCEEEecCccc
Confidence 11122222222233322111 1111222232334455 7899999999999988886543 23468999999965
Q ss_pred CCC----CC---CChhHHHHhhcCCCCCeEEEEEecCcc-cCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCc
Q 044441 141 ESI----FK---EDDTKIMDWLSQKEPWSVVFVSFGSEY-FLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALP 212 (333)
Q Consensus 141 ~~~----~~---~~~~~l~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~ 212 (333)
... .. +.+.+|.+||+.++++++|||||||.. ..+.+++++++.+|++.|++|||++.... ...+|
T Consensus 246 ~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~------~~~l~ 319 (448)
T PLN02562 246 QEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW------REGLP 319 (448)
T ss_pred ccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc------hhhCC
Confidence 321 11 234568899999988889999999976 57899999999999999999999987421 12478
Q ss_pred hhHHHHHHhcCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHh-CeeeEee
Q 044441 213 QGFAEEIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDI-GMGMDVP 291 (333)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~-G~g~~l~ 291 (333)
++|.++. ++|+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++. |+|+.+.
T Consensus 320 ~~~~~~~---~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~ 396 (448)
T PLN02562 320 PGYVERV---SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS 396 (448)
T ss_pred HHHHHHh---ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC
Confidence 8888876 46778889999999999999999999999999999999999999999999999999999874 9998883
Q ss_pred cCccCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 292 RDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 292 ~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
.++.++|+++|+++|. +++||+||+++++.++
T Consensus 397 ------~~~~~~l~~~v~~~l~---~~~~r~~a~~l~~~~~ 428 (448)
T PLN02562 397 ------GFGQKEVEEGLRKVME---DSGMGERLMKLRERAM 428 (448)
T ss_pred ------CCCHHHHHHHHHHHhC---CHHHHHHHHHHHHHHH
Confidence 3799999999999998 6899999999998764
No 21
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.4e-45 Score=351.78 Aligned_cols=312 Identities=29% Similarity=0.463 Sum_probs=230.9
Q ss_pred chHHHHHHHhhc--CCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhcccc-C-----CCCC---CC--C-cc
Q 044441 4 AKPAFCNILETL--KPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNII-N-----PSLK---YP--F-FE 69 (333)
Q Consensus 4 ~~~~l~~~l~~~--~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~-~-----~~~~---~p--~-~~ 69 (333)
+.+.+.+++++. ++||||+|.+++|+..+|+++|||+|.+++.++.....+.+... . +... .. . ..
T Consensus 94 ~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 173 (459)
T PLN02448 94 MEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVELSESGEERVDYI 173 (459)
T ss_pred hHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCccccccCCccccC
Confidence 456667777764 57999999999999999999999999999998865554332210 0 1000 00 0 01
Q ss_pred cCCCcccccccccccCCCCCCchhhHhHHH---hhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCC-C-
Q 044441 70 SDFLDRENKKINRFMHPTANGTLNKDRNLK---AFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESI-F- 144 (333)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~-~- 144 (333)
.+++......+..++. .........+.+ .+.. ++.+++|||++||++++++++..++.+++.|||+..... .
T Consensus 174 Pg~~~l~~~dlp~~~~--~~~~~~~~~~~~~~~~~~~-~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~iGP~~~~~~~~~ 250 (459)
T PLN02448 174 PGLSSTRLSDLPPIFH--GNSRRVLKRILEAFSWVPK-AQYLLFTSFYELEAQAIDALKSKFPFPVYPIGPSIPYMELKD 250 (459)
T ss_pred CCCCCCChHHCchhhc--CCchHHHHHHHHHHhhccc-CCEEEEccHHHhhHHHHHHHHhhcCCceEEecCcccccccCC
Confidence 1111111222333322 111121222222 2344 678999999999999999887766668999999964210 0
Q ss_pred ------C-CChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHH
Q 044441 145 ------K-EDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAE 217 (333)
Q Consensus 145 ------~-~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 217 (333)
. ..+.++..||+.++++++|||||||....+.+++.+++.+|+..+++|||++.... .++.+
T Consensus 251 ~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~-----------~~~~~ 319 (459)
T PLN02448 251 NSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEA-----------SRLKE 319 (459)
T ss_pred CccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCch-----------hhHhH
Confidence 0 12247999999998889999999999888899999999999999999999876321 12333
Q ss_pred HHHhcCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHh-CeeeEeecCc-c
Q 044441 218 EIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDI-GMGMDVPRDK-I 295 (333)
Q Consensus 218 ~~~~~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~-G~g~~l~~~~-~ 295 (333)
+. ..|.++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++. |+|+.+..+. .
T Consensus 320 ~~---~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~ 396 (459)
T PLN02448 320 IC---GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGE 396 (459)
T ss_pred hc---cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEeccccc
Confidence 22 34677889999999999999999999999999999999999999999999999999999984 8888885321 0
Q ss_pred CCCcCHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHhh
Q 044441 296 NQRLRREEVARVIKHVLLQ--EEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 296 ~~~~~~~~l~~ai~~vl~~--~~~~~~~~~a~~l~~~~~ 332 (333)
.+.+++++|+++++++|++ ++++++|+||+++++.++
T Consensus 397 ~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~ 435 (459)
T PLN02448 397 ETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICR 435 (459)
T ss_pred CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 2357999999999999974 457899999999999876
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=7.2e-45 Score=349.38 Aligned_cols=296 Identities=16% Similarity=0.213 Sum_probs=230.5
Q ss_pred hHHHHHHHh--hcCCCEEEEcCCchhHHHHHHHc-CCCeEEEechhHHHHH--hhh-ccccCCCCCCCCcccCC--Cccc
Q 044441 5 KPAFCNILE--TLKPTLVMYDLFQPWAAEAAYQY-HIAAVLFLTISAVAGS--YLL-HNIINPSLKYPFFESDF--LDRE 76 (333)
Q Consensus 5 ~~~l~~~l~--~~~pD~vv~D~~~~~~~~~A~~l-giP~v~~~~~~~~~~~--~~~-~~~~~~~~~~p~~~~~~--~~~~ 76 (333)
.+.+.++++ +.++|++|+|.+..|+..+|+.+ ++|.|.+++....... ..+ .| .|++++|...+.+ ++..
T Consensus 123 ~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~~~gg~p--~~~syvP~~~~~~~~~Msf 200 (507)
T PHA03392 123 LPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFETMGAVS--RHPVYYPNLWRSKFGNLNV 200 (507)
T ss_pred CHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHHhhccCC--CCCeeeCCcccCCCCCCCH
Confidence 466778887 77899999998889999999999 9999888775543222 223 33 3566777554443 1111
Q ss_pred cccccccc------------CCC------CCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcC
Q 044441 77 NKKINRFM------------HPT------ANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPL 138 (333)
Q Consensus 77 ~~~~~~~~------------~~~------~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl 138 (333)
..++..++ .+. ++.......+.+...+ .+++|+|+.+.+|++ +.+++++++|||+
T Consensus 201 ~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~-~~l~lvns~~~~d~~------rp~~p~v~~vGgi 273 (507)
T PHA03392 201 WETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNR-VQLLFVNVHPVFDNN------RPVPPSVQYLGGL 273 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhC-CcEEEEecCccccCC------CCCCCCeeeeccc
Confidence 11111110 000 1100001234455555 889999999999975 5678899999999
Q ss_pred cCCC-CCCCChhHHHHhhcCCCCCeEEEEEecCccc---CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchh
Q 044441 139 VQES-IFKEDDTKIMDWLSQKEPWSVVFVSFGSEYF---LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQG 214 (333)
Q Consensus 139 ~~~~-~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~ 214 (333)
..++ ...++++++.+|++..+ +++|||||||... .+.+.++.+++++++.+.+|||+++... .+.+
T Consensus 274 ~~~~~~~~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~---------~~~~ 343 (507)
T PHA03392 274 HLHKKPPQPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV---------EAIN 343 (507)
T ss_pred ccCCCCCCCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc---------Cccc
Confidence 7643 34567899999999865 4699999999863 5688999999999999999999987432 1101
Q ss_pred HHHHHHhcCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCc
Q 044441 215 FAEEIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDK 294 (333)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~ 294 (333)
.++|+.+.+|+||.++|+|+.+++||||||+||++||+++|||+|++|+++||+.||++++++|+|+.+++
T Consensus 344 -------~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~-- 414 (507)
T PHA03392 344 -------LPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDT-- 414 (507)
T ss_pred -------CCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEecc--
Confidence 46699999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred cCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhhC
Q 044441 295 INQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSERMRR 333 (333)
Q Consensus 295 ~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~ 333 (333)
..++++++.++|+++|+ +++|++||+++++.+++
T Consensus 415 --~~~t~~~l~~ai~~vl~---~~~y~~~a~~ls~~~~~ 448 (507)
T PHA03392 415 --VTVSAAQLVLAIVDVIE---NPKYRKNLKELRHLIRH 448 (507)
T ss_pred --CCcCHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHh
Confidence 56899999999999999 79999999999999874
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=5.4e-45 Score=353.66 Aligned_cols=295 Identities=24% Similarity=0.350 Sum_probs=204.0
Q ss_pred HHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhc-cccCCCCCCCCcccCC--Ccccccc----
Q 044441 7 AFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLH-NIINPSLKYPFFESDF--LDRENKK---- 79 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~--~~~~~~~---- 79 (333)
.+.+.+++.++|++|+|.+.+|+..+|+.+++|.+.+.+........... ....++++.|...+.+ ++....+
T Consensus 110 ~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~ 189 (500)
T PF00201_consen 110 ELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNF 189 (500)
T ss_dssp TSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTS
T ss_pred HHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccchhhhhccCCCCChHHhccccccCCCccchhhhhhhh
Confidence 34455677789999999888999999999999998765443221111110 1112455666544433 1111111
Q ss_pred ---------cccccCCC-CCC---chhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCC
Q 044441 80 ---------INRFMHPT-ANG---TLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKE 146 (333)
Q Consensus 80 ---------~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~ 146 (333)
...+..+. +.. ........+.+.+ ..++++|+.+.++.| +...++++++|++...+ ..+
T Consensus 190 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~l~ns~~~ld~p------rp~~p~v~~vGgl~~~~-~~~ 261 (500)
T PF00201_consen 190 LFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSN-ASLVLINSHPSLDFP------RPLLPNVVEVGGLHIKP-AKP 261 (500)
T ss_dssp HHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHH-HHHCCSSTEEE----------HHHHCTSTTGCGC-S-----T
T ss_pred hhhhhhccccccchhhHHHHHhhhcccccccHHHHHH-HHHHhhhccccCcCC------cchhhcccccCcccccc-ccc
Confidence 11111110 010 0111223444555 788999998888864 33456899999997643 356
Q ss_pred ChhHHHHhhcCCCCCeEEEEEecCccc-CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCC
Q 044441 147 DDTKIMDWLSQKEPWSVVFVSFGSEYF-LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKG 225 (333)
Q Consensus 147 ~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 225 (333)
++.++..|++...++++|||||||... .+.+..+++++++++.+++|||++.... +.. .++|
T Consensus 262 l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~----------~~~-------l~~n 324 (500)
T PF00201_consen 262 LPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEP----------PEN-------LPKN 324 (500)
T ss_dssp CHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSH----------GCH-------HHTT
T ss_pred cccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCcccccccccc----------ccc-------ccce
Confidence 788999999985567799999999875 3455588999999999999999987521 111 3458
Q ss_pred eEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHH
Q 044441 226 MLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVA 305 (333)
Q Consensus 226 ~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~ 305 (333)
+.+.+|+||.++|+|+++++||||||+||+.||+++|||+|++|+++||+.||.++++.|+|+.+++ ..+|.+++.
T Consensus 325 ~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~----~~~~~~~l~ 400 (500)
T PF00201_consen 325 VLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDK----NDLTEEELR 400 (500)
T ss_dssp EEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGG----GC-SHHHHH
T ss_pred EEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEe----cCCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999984 678999999
Q ss_pred HHHHHHhcCcchHHHHHHHHHHHHHhhC
Q 044441 306 RVIKHVLLQEEGKQIRRKAKEMSERMRR 333 (333)
Q Consensus 306 ~ai~~vl~~~~~~~~~~~a~~l~~~~~~ 333 (333)
++|+++|+ +++|++||+++++++++
T Consensus 401 ~ai~~vl~---~~~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 401 AAIREVLE---NPSYKENAKRLSSLFRD 425 (500)
T ss_dssp HHHHHHHH---SHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHh---hhHHHHHHHHHHHHHhc
Confidence 99999999 78999999999999874
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=3.8e-35 Score=276.32 Aligned_cols=282 Identities=17% Similarity=0.287 Sum_probs=200.4
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCC---Ccc----c--
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDF---LDR----E-- 76 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~----~-- 76 (333)
+.+.+++++++||+||+|.+++++..+|+++|||+|.+++.+..+.. .+...+ |...... +.. .
T Consensus 82 ~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~ 154 (392)
T TIGR01426 82 PQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE---FEEMVS----PAGEGSAEEGAIAERGLAEY 154 (392)
T ss_pred HHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc---cccccc----ccchhhhhhhccccchhHHH
Confidence 45666777889999999988899999999999999998654321100 010000 1100000 000 0
Q ss_pred ccccccccCCCCCCch--hhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCCChhHHHHh
Q 044441 77 NKKINRFMHPTANGTL--NKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKEDDTKIMDW 154 (333)
Q Consensus 77 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~l~~~ 154 (333)
...++.+.. +.++. ....+. ... .+..+..+.+.|++ ....++++++++||+...+. +...|
T Consensus 155 ~~~~~~~r~--~~gl~~~~~~~~~--~~~-~~~~l~~~~~~l~~-----~~~~~~~~~~~~Gp~~~~~~------~~~~~ 218 (392)
T TIGR01426 155 VARLSALLE--EHGITTPPVEFLA--APR-RDLNLVYTPKAFQP-----AGETFDDSFTFVGPCIGDRK------EDGSW 218 (392)
T ss_pred HHHHHHHHH--HhCCCCCCHHHHh--cCC-cCcEEEeCChHhCC-----CccccCCCeEEECCCCCCcc------ccCCC
Confidence 001222222 23322 111111 112 34456655444443 44567889999999876522 12237
Q ss_pred hcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccc
Q 044441 155 LSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQ 234 (333)
Q Consensus 155 l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 234 (333)
....+++++|||++||........+..+++++.+.+.+++|.++..... ..+.. .++|+.+.+|+|+
T Consensus 219 ~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~-----~~~~~--------~~~~v~~~~~~p~ 285 (392)
T TIGR01426 219 ERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP-----ADLGE--------LPPNVEVRQWVPQ 285 (392)
T ss_pred CCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh-----hHhcc--------CCCCeEEeCCCCH
Confidence 7666678899999999876666788999999999999999887653211 00111 4568999999999
Q ss_pred hhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcC
Q 044441 235 AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 235 ~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
.+++.++++ +|||||+||++||+++|+|+|++|...||+.||+++++.|+|+.+. ...++++++.++|+++|.
T Consensus 286 ~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~----~~~~~~~~l~~ai~~~l~- 358 (392)
T TIGR01426 286 LEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLP----PEEVTAEKLREAVLAVLS- 358 (392)
T ss_pred HHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEec----cccCCHHHHHHHHHHHhc-
Confidence 999998777 9999999999999999999999999999999999999999999996 356899999999999998
Q ss_pred cchHHHHHHHHHHHHHhh
Q 044441 315 EEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 315 ~~~~~~~~~a~~l~~~~~ 332 (333)
+++|+++++++++.++
T Consensus 359 --~~~~~~~~~~l~~~~~ 374 (392)
T TIGR01426 359 --DPRYAERLRKMRAEIR 374 (392)
T ss_pred --CHHHHHHHHHHHHHHH
Confidence 7889999999998875
No 25
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=3.9e-32 Score=263.46 Aligned_cols=206 Identities=29% Similarity=0.567 Sum_probs=159.9
Q ss_pred CcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCCChhHHHHhhcCCCCC--eEEEEEecCcc---cCCHHHH
Q 044441 105 CKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKEDDTKIMDWLSQKEPW--SVVFVSFGSEY---FLSKDEM 179 (333)
Q Consensus 105 ~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~--~~v~vs~Gs~~---~~~~~~~ 179 (333)
....++|+.+.++.+ .....+++.+|||+....... ....+..|++..+.. ++|||||||.. ..+.++.
T Consensus 225 ~~~~~ln~~~~~~~~-----~~~~~~~v~~IG~l~~~~~~~-~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~ 298 (496)
T KOG1192|consen 225 ASFIFLNSNPLLDFE-----PRPLLPKVIPIGPLHVKDSKQ-KSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQK 298 (496)
T ss_pred CeEEEEccCcccCCC-----CCCCCCCceEECcEEecCccc-cccccHHHHHHHhhccCCeEEEECCcccccccCCHHHH
Confidence 456666665544431 233467999999997652211 111355566665554 79999999998 6899999
Q ss_pred HHHHHHHhcC-CCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhh-ccccccceeEeecCchhHHH
Q 044441 180 HEIASGLLLS-EVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKI-LRHGRIGGFLSHCGWGSAVE 257 (333)
Q Consensus 180 ~~~~~~l~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~l-l~~~~~~~~I~hgG~~s~~e 257 (333)
.+++.+++.. ++.|+|++....... +++++..+ ...|+...+|+||.++ |.|+++++|||||||||++|
T Consensus 299 ~~l~~~l~~~~~~~FiW~~~~~~~~~------~~~~~~~~---~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E 369 (496)
T KOG1192|consen 299 KELAKALESLQGVTFLWKYRPDDSIY------FPEGLPNR---GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLE 369 (496)
T ss_pred HHHHHHHHhCCCceEEEEecCCcchh------hhhcCCCC---CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHH
Confidence 9999999999 888999998643210 22221110 1457888899999988 69999999999999999999
Q ss_pred HHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 258 GMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 258 al~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
++++|||+|++|+++||+.||+++++.|.|.++.+ ..++.+.+.+++.++++ +++|+++|+++++.++
T Consensus 370 ~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~----~~~~~~~~~~~~~~il~---~~~y~~~~~~l~~~~~ 437 (496)
T KOG1192|consen 370 SIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDK----RDLVSEELLEAIKEILE---NEEYKEAAKRLSEILR 437 (496)
T ss_pred HHhcCCceecCCccccchhHHHHHHhCCCEEEEeh----hhcCcHHHHHHHHHHHc---ChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888874 44555559999999999 7999999999999865
No 26
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=6.1e-32 Score=255.24 Aligned_cols=282 Identities=18% Similarity=0.101 Sum_probs=186.9
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCC-Cccccc-----
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDF-LDRENK----- 78 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~----- 78 (333)
.+.+.+.+++++||+||+|.+++++..+|+++|||+|.+++++........++ . ....... ......
T Consensus 93 ~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~ 165 (401)
T cd03784 93 LDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPP-----L--GRANLRLYALLEAELWQDL 165 (401)
T ss_pred HHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCc-----c--chHHHHHHHHHHHHHHHHH
Confidence 34455566778999999999889999999999999999987754322111100 0 0000000 000000
Q ss_pred ---ccccccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecC-cCcCCCCCCCChhHHHHh
Q 044441 79 ---KINRFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVG-PLVQESIFKEDDTKIMDW 154 (333)
Q Consensus 79 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~l~~~ 154 (333)
.++.... ..++..... .. . . .+..+.... +++.+....++++..++| ++...+.....++++..|
T Consensus 166 ~~~~~~~~~~--~~gl~~~~~-~~-~-~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 234 (401)
T cd03784 166 LGAWLRARRR--RLGLPPLSL-LD-G-S-DVPELYGFS-----PAVLPPPPDWPRFDLVTGYGFRDVPYNGPPPPELWLF 234 (401)
T ss_pred HHHHHHHHHH--hcCCCCCcc-cc-c-C-CCcEEEecC-----cccCCCCCCccccCcEeCCCCCCCCCCCCCCHHHHHH
Confidence 0000000 111111000 00 0 0 111222111 222223345666777775 444333333456778888
Q ss_pred hcCCCCCeEEEEEecCcccC-CHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEecccc
Q 044441 155 LSQKEPWSVVFVSFGSEYFL-SKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVP 233 (333)
Q Consensus 155 l~~~~~~~~v~vs~Gs~~~~-~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p 233 (333)
++. .+++|||++||.... ....+..+++++...+.++||.++...... .. .++|+.+.+|+|
T Consensus 235 ~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~-------~~--------~~~~v~~~~~~p 297 (401)
T cd03784 235 LAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLGA-------ED--------LPDNVRVVDFVP 297 (401)
T ss_pred HhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccccc-------cC--------CCCceEEeCCCC
Confidence 865 356999999998763 456778899999988999999988543210 01 456999999999
Q ss_pred chhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 234 QAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 234 ~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
+.++|.++++ ||||||+||++|++++|||+|++|+..||+.||+++++.|+|+.+.. ..++.+++.++++++++
T Consensus 298 ~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~----~~~~~~~l~~al~~~l~ 371 (401)
T cd03784 298 HDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDP----RELTAERLAAALRRLLD 371 (401)
T ss_pred HHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCc----ccCCHHHHHHHHHHHhC
Confidence 9999998776 99999999999999999999999999999999999999999999973 45899999999999998
Q ss_pred CcchHHHHHHHHHHHHHh
Q 044441 314 QEEGKQIRRKAKEMSERM 331 (333)
Q Consensus 314 ~~~~~~~~~~a~~l~~~~ 331 (333)
++ ++++++++++.+
T Consensus 372 ---~~-~~~~~~~~~~~~ 385 (401)
T cd03784 372 ---PP-SRRRAAALLRRI 385 (401)
T ss_pred ---HH-HHHHHHHHHHHH
Confidence 44 555566555554
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.97 E-value=6.6e-30 Score=239.70 Aligned_cols=175 Identities=24% Similarity=0.392 Sum_probs=146.7
Q ss_pred cCCCCeeecCcCcCCCCCCCChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchh
Q 044441 127 LMENEIVPVGPLVQESIFKEDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKIT 206 (333)
Q Consensus 127 ~~~~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~ 206 (333)
.+|....++||+...+. .+...| ...++++||||+||.... .+.+..+++++...+.++|..++. .+.
T Consensus 210 ~~p~~~~~~~~~~~~~~-----~~~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~~~--- 277 (406)
T COG1819 210 RLPFIGPYIGPLLGEAA-----NELPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-ARD--- 277 (406)
T ss_pred CCCCCcCcccccccccc-----ccCcch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-ccc---
Confidence 34556677888765432 223333 234467999999999866 889999999999999999998875 211
Q ss_pred hhhcCchhHHHHHHhcCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCe
Q 044441 207 IEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGM 286 (333)
Q Consensus 207 ~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~ 286 (333)
.+.+ .+.|+.+.+|+||.+++.++++ ||||||+||++|||++|||+|++|...||+.||.++++.|+
T Consensus 278 ---~~~~--------~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~ 344 (406)
T COG1819 278 ---TLVN--------VPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGA 344 (406)
T ss_pred ---cccc--------CCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCC
Confidence 0112 5669999999999999998888 99999999999999999999999999999999999999999
Q ss_pred eeEeecCccCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhhC
Q 044441 287 GMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSERMRR 333 (333)
Q Consensus 287 g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~ 333 (333)
|+.+. .+.++.+.++++|++||+ ++.|+++++++++.+++
T Consensus 345 G~~l~----~~~l~~~~l~~av~~vL~---~~~~~~~~~~~~~~~~~ 384 (406)
T COG1819 345 GIALP----FEELTEERLRAAVNEVLA---DDSYRRAAERLAEEFKE 384 (406)
T ss_pred ceecC----cccCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHhhh
Confidence 99997 467999999999999999 79999999999998863
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.86 E-value=3.3e-20 Score=171.75 Aligned_cols=243 Identities=15% Similarity=0.202 Sum_probs=158.6
Q ss_pred HHHHHhhcCCCEEEEcC--CchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCcccccccccccC
Q 044441 8 FCNILETLKPTLVMYDL--FQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINRFMH 85 (333)
Q Consensus 8 l~~~l~~~~pD~vv~D~--~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 85 (333)
..+++++++||+||+.. .+..+..+|+.+|+|++.+........
T Consensus 83 ~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~---------------------------------- 128 (352)
T PRK12446 83 AYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGL---------------------------------- 128 (352)
T ss_pred HHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCccH----------------------------------
Confidence 34668999999999873 344478899999999998654321100
Q ss_pred CCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCC-CCeeecCcCcCCCCCCCChhHHHHhhcCCCCCeEE
Q 044441 86 PTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLME-NEIVPVGPLVQESIFKEDDTKIMDWLSQKEPWSVV 164 (333)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~-~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~~~v 164 (333)
..++. ... ++.+++ +|++- ...++ .+++++|+.+.+.......+.....++-.+++++|
T Consensus 129 --------~nr~~--~~~-a~~v~~-~f~~~--------~~~~~~~k~~~tG~Pvr~~~~~~~~~~~~~~~~l~~~~~~i 188 (352)
T PRK12446 129 --------ANKIA--LRF-ASKIFV-TFEEA--------AKHLPKEKVIYTGSPVREEVLKGNREKGLAFLGFSRKKPVI 188 (352)
T ss_pred --------HHHHH--HHh-hCEEEE-Eccch--------hhhCCCCCeEEECCcCCcccccccchHHHHhcCCCCCCcEE
Confidence 11111 122 344433 22211 11223 47889996654321111122222334444557799
Q ss_pred EEEecCcccCC-HHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccc-cch-hhcccc
Q 044441 165 FVSFGSEYFLS-KDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWV-PQA-KILRHG 241 (333)
Q Consensus 165 ~vs~Gs~~~~~-~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-p~~-~ll~~~ 241 (333)
+|..||.+... ++.+..++..+.. +..++|.++....+ ..+ . ...++.+.+|+ ++. +++.++
T Consensus 189 Lv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~~-----~~~-----~----~~~~~~~~~f~~~~m~~~~~~a 253 (352)
T PRK12446 189 TIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGNLD-----DSL-----Q----NKEGYRQFEYVHGELPDILAIT 253 (352)
T ss_pred EEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchHH-----HHH-----h----hcCCcEEecchhhhHHHHHHhC
Confidence 99999998643 2444445554432 47888988853200 000 0 11244556777 444 789988
Q ss_pred ccceeEeecCchhHHHHHHhCcceeccccc-----cchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcc
Q 044441 242 RIGGFLSHCGWGSAVEGMVFGVPIIAMPMV-----YEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEE 316 (333)
Q Consensus 242 ~~~~~I~hgG~~s~~eal~~GvP~i~~P~~-----~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~ 316 (333)
++ +|||||.+|+.|++++|+|+|++|+. .||..||.++++.|+|..+. .+.++++.+.+++.+++++
T Consensus 254 dl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~----~~~~~~~~l~~~l~~ll~~-- 325 (352)
T PRK12446 254 DF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLY----EEDVTVNSLIKHVEELSHN-- 325 (352)
T ss_pred CE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcc----hhcCCHHHHHHHHHHHHcC--
Confidence 87 99999999999999999999999985 48999999999999999997 4678999999999999974
Q ss_pred hHHHHHHHHHH
Q 044441 317 GKQIRRKAKEM 327 (333)
Q Consensus 317 ~~~~~~~a~~l 327 (333)
.+.++++++++
T Consensus 326 ~~~~~~~~~~~ 336 (352)
T PRK12446 326 NEKYKTALKKY 336 (352)
T ss_pred HHHHHHHHHHc
Confidence 34567666554
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.84 E-value=4.6e-20 Score=168.88 Aligned_cols=228 Identities=19% Similarity=0.243 Sum_probs=149.1
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccccccc
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINRFM 84 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 84 (333)
...+.+.+++++||+||+|. .+.+..+|+..|||++.+........... .++..
T Consensus 83 ~~~~~~~l~~~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~~~---------~~~~~---------------- 136 (318)
T PF13528_consen 83 IRREIRWLREFRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHPNF---------WLPWD---------------- 136 (318)
T ss_pred HHHHHHHHHhcCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHcccccC---------Ccchh----------------
Confidence 34556677889999999994 46678899999999999887764321100 00000
Q ss_pred CCCCCCchhhHhHHH-h-hhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCCChhHHHHhhcCCCCCe
Q 044441 85 HPTANGTLNKDRNLK-A-FELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKEDDTKIMDWLSQKEPWS 162 (333)
Q Consensus 85 ~~~~~~~~~~~~~~~-~-~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~~ 162 (333)
+.......++.. . +.. ++..+.-+++ .. .....++.++||+......... ..+++
T Consensus 137 ---~~~~~~~~~~~~~~~~~~-~~~~l~~~~~-~~--------~~~~~~~~~~~p~~~~~~~~~~----------~~~~~ 193 (318)
T PF13528_consen 137 ---QDFGRLIERYIDRYHFPP-ADRRLALSFY-PP--------LPPFFRVPFVGPIIRPEIRELP----------PEDEP 193 (318)
T ss_pred ---hhHHHHHHHhhhhccCCc-ccceecCCcc-cc--------ccccccccccCchhcccccccC----------CCCCC
Confidence 000001111111 1 222 3444443333 11 1112346678888754211100 11345
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCC-CcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccc-cc-hhhcc
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSE-VSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWV-PQ-AKILR 239 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-p~-~~ll~ 239 (333)
.|+|++|+.... .++++++..+ ..+++. +....+ . ..+|+.+..|. +. .++|.
T Consensus 194 ~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~~~---------~--------~~~ni~~~~~~~~~~~~~m~ 249 (318)
T PF13528_consen 194 KILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNAAD---------P--------RPGNIHVRPFSTPDFAELMA 249 (318)
T ss_pred EEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCccc---------c--------cCCCEEEeecChHHHHHHHH
Confidence 899999987532 5566776665 566555 432100 1 45689988876 33 47888
Q ss_pred ccccceeEeecCchhHHHHHHhCcceecccc--ccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHH
Q 044441 240 HGRIGGFLSHCGWGSAVEGMVFGVPIIAMPM--VYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 240 ~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~--~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~v 311 (333)
.+++ +|||||+||++|++++|+|+|++|. +.||..||+++++.|+|+.+. ...++++.++++|+++
T Consensus 250 ~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~----~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 250 AADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLS----QEDLTPERLAEFLERL 317 (318)
T ss_pred hCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcc----cccCCHHHHHHHHhcC
Confidence 7777 9999999999999999999999999 789999999999999999997 4779999999999764
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=1.9e-18 Score=158.72 Aligned_cols=248 Identities=20% Similarity=0.208 Sum_probs=162.0
Q ss_pred hHHHHHHHhhcCCCEEEEc--CCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccccc
Q 044441 5 KPAFCNILETLKPTLVMYD--LFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINR 82 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D--~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 82 (333)
.-+.++++++++||+||.- +.+..+..+|..+|||.+.+-........
T Consensus 80 ~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~a------------------------------ 129 (357)
T COG0707 80 VLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLA------------------------------ 129 (357)
T ss_pred HHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcchh------------------------------
Confidence 3456778999999999985 55667888999999999997654322111
Q ss_pred ccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecC-cCcCCCCCCCChhHHHHhhcCCCCC
Q 044441 83 FMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVG-PLVQESIFKEDDTKIMDWLSQKEPW 161 (333)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~l~~~l~~~~~~ 161 (333)
.++. ... ++.+.+ +|+..+. ..-+.++..+| |+..+-. . .+..-...... .++
T Consensus 130 ------------nk~~--~~~-a~~V~~-~f~~~~~-------~~~~~~~~~tG~Pvr~~~~-~-~~~~~~~~~~~-~~~ 183 (357)
T COG0707 130 ------------NKIL--SKF-AKKVAS-AFPKLEA-------GVKPENVVVTGIPVRPEFE-E-LPAAEVRKDGR-LDK 183 (357)
T ss_pred ------------HHHh--HHh-hceeee-ccccccc-------cCCCCceEEecCcccHHhh-c-cchhhhhhhcc-CCC
Confidence 0111 111 233322 2221111 01123578888 5543211 1 11121122212 256
Q ss_pred eEEEEEecCcccCC-HHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCC-eEEeccccch-hhc
Q 044441 162 SVVFVSFGSEYFLS-KDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKG-MLVQGWVPQA-KIL 238 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~-~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~p~~-~ll 238 (333)
++|+|..||++... ++.+..+...+.+ +..+++.++... . +...... ...+ +.+.+|..++ +++
T Consensus 184 ~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~-~---------~~~~~~~--~~~~~~~v~~f~~dm~~~~ 250 (357)
T COG0707 184 KTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND-L---------EELKSAY--NELGVVRVLPFIDDMAALL 250 (357)
T ss_pred cEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch-H---------HHHHHHH--hhcCcEEEeeHHhhHHHHH
Confidence 79999999998633 3444445444444 567778877542 1 1122222 2223 7788898887 688
Q ss_pred cccccceeEeecCchhHHHHHHhCcceeccccc----cchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcC
Q 044441 239 RHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMV----YEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 239 ~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~----~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
+.+|+ +||++|++|+.|++++|+|+|.+|.. .||..||..+++.|+|++++ ..++|.+++.+.|.+++.+
T Consensus 251 ~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~----~~~lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 251 AAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIR----QSELTPEKLAELILRLLSN 324 (357)
T ss_pred HhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEec----cccCCHHHHHHHHHHHhcC
Confidence 87777 99999999999999999999999973 48999999999999999998 5779999999999999985
Q ss_pred -cchHHHHHHHHHH
Q 044441 315 -EEGKQIRRKAKEM 327 (333)
Q Consensus 315 -~~~~~~~~~a~~l 327 (333)
++-+.++++++++
T Consensus 325 ~~~l~~m~~~a~~~ 338 (357)
T COG0707 325 PEKLKAMAENAKKL 338 (357)
T ss_pred HHHHHHHHHHHHhc
Confidence 3345666666655
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.77 E-value=2.7e-17 Score=150.80 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=84.8
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccc--hhhc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQ--AKIL 238 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~--~~ll 238 (333)
++.|+|.+|+.. ...+++++.+.+. +.+.+.... . ..+. .+.|+.+.+|.|+ .++|
T Consensus 188 ~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~~-~-------~~~~-------~~~~v~~~~~~~~~~~~~l 245 (321)
T TIGR00661 188 EDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSYE-V-------AKNS-------YNENVEIRRITTDNFKELI 245 (321)
T ss_pred CCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCCC-C-------Cccc-------cCCCEEEEECChHHHHHHH
Confidence 457888888753 2345666766553 223333211 0 0010 2458888889972 3566
Q ss_pred cccccceeEeecCchhHHHHHHhCcceecccccc--chhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 239 RHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVY--EQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 239 ~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~--DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
..+++ +|||||++|++|++++|+|+|++|..+ ||..||+.+++.|+|+.++. .++ ++.+++.++++
T Consensus 246 ~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~----~~~---~~~~~~~~~~~ 313 (321)
T TIGR00661 246 KNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEY----KEL---RLLEAILDIRN 313 (321)
T ss_pred HhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcCh----hhH---HHHHHHHhccc
Confidence 75555 999999999999999999999999854 89999999999999999963 233 55556666665
No 32
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.63 E-value=2.1e-14 Score=135.26 Aligned_cols=152 Identities=13% Similarity=0.232 Sum_probs=104.6
Q ss_pred cCCCCCeEEEEEecCcccCCHHHHHHHHHHH-hc-CCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEecccc
Q 044441 156 SQKEPWSVVFVSFGSEYFLSKDEMHEIASGL-LL-SEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVP 233 (333)
Q Consensus 156 ~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l-~~-~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p 233 (333)
+-.++++++++..|+.+. ...+..+++++ +. .+..+++.++.+.. +-+.+.++. ....++.+.+|+.
T Consensus 197 ~l~~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~--------l~~~l~~~~-~~~~~v~~~G~~~ 265 (391)
T PRK13608 197 NLDPDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE--------LKRSLTAKF-KSNENVLILGYTK 265 (391)
T ss_pred CCCCCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH--------HHHHHHHHh-ccCCCeEEEeccc
Confidence 333445688888898763 23444455553 22 24566566553210 001111111 0235788889997
Q ss_pred ch-hhccccccceeEeecCchhHHHHHHhCcceecc-ccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHH
Q 044441 234 QA-KILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAM-PMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 234 ~~-~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~-P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~v 311 (333)
+. ++++.+|+ +|+..|..|+.||+++|+|+|+. |..++|..|+..+++.|+|+.+. +.+++.++|.++
T Consensus 266 ~~~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~--------~~~~l~~~i~~l 335 (391)
T PRK13608 266 HMNEWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIAD--------TPEEAIKIVASL 335 (391)
T ss_pred hHHHHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeC--------CHHHHHHHHHHH
Confidence 65 68887777 99999989999999999999998 77778889999999999998874 788999999999
Q ss_pred hcC-cchHHHHHHHHHHH
Q 044441 312 LLQ-EEGKQIRRKAKEMS 328 (333)
Q Consensus 312 l~~-~~~~~~~~~a~~l~ 328 (333)
+++ +.-+++++++++++
T Consensus 336 l~~~~~~~~m~~~~~~~~ 353 (391)
T PRK13608 336 TNGNEQLTNMISTMEQDK 353 (391)
T ss_pred hcCHHHHHHHHHHHHHhc
Confidence 985 22345666666543
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.63 E-value=9.5e-14 Score=128.59 Aligned_cols=249 Identities=19% Similarity=0.199 Sum_probs=149.6
Q ss_pred HHHHHHhhcCCCEEEEcC--CchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccccccc
Q 044441 7 AFCNILETLKPTLVMYDL--FQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINRFM 84 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~--~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 84 (333)
.+.+++++++||+|++.. .+..+..+|...|+|++...... .+
T Consensus 80 ~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~-----------------~~------------------ 124 (350)
T cd03785 80 QARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA-----------------VP------------------ 124 (350)
T ss_pred HHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC-----------------Cc------------------
Confidence 466778899999999873 35556778899999998632110 00
Q ss_pred CCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCCChhHHHHhhcCCCCCeEE
Q 044441 85 HPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKEDDTKIMDWLSQKEPWSVV 164 (333)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~~~v 164 (333)
. ...++ .... ++.+++.+-...+. ..+.++.++|+-+....... .+. ...+...+++++|
T Consensus 125 ---~----~~~~~--~~~~-~~~vi~~s~~~~~~--------~~~~~~~~i~n~v~~~~~~~-~~~-~~~~~~~~~~~~i 184 (350)
T cd03785 125 ---G----LANRL--LARF-ADRVALSFPETAKY--------FPKDKAVVTGNPVREEILAL-DRE-RARLGLRPGKPTL 184 (350)
T ss_pred ---c----HHHHH--HHHh-hCEEEEcchhhhhc--------CCCCcEEEECCCCchHHhhh-hhh-HHhcCCCCCCeEE
Confidence 0 00111 1222 56666654322111 12356778886543211000 111 2333333445567
Q ss_pred EEEecCcccCC-HHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccc-hhhccccc
Q 044441 165 FVSFGSEYFLS-KDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQ-AKILRHGR 242 (333)
Q Consensus 165 ~vs~Gs~~~~~-~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~-~~ll~~~~ 242 (333)
++..|+..... .+.+..++..+.+.+..+++.++... . +.+.+..++...|+.+.+|+.. ..++..++
T Consensus 185 ~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~-~---------~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad 254 (350)
T cd03785 185 LVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD-L---------EEVKKAYEELGVNYEVFPFIDDMAAAYAAAD 254 (350)
T ss_pred EEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc-H---------HHHHHHHhccCCCeEEeehhhhHHHHHHhcC
Confidence 67666654211 12233444444433445566665431 1 1222222112358888888833 47888777
Q ss_pred cceeEeecCchhHHHHHHhCcceecccc----ccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCc-ch
Q 044441 243 IGGFLSHCGWGSAVEGMVFGVPIIAMPM----VYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQE-EG 317 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~~GvP~i~~P~----~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~-~~ 317 (333)
+ +|+++|.++++||+++|+|+|+.|. ..+|..|+..+.+.|.|+.+. ....+.+++.++|++++.+. ..
T Consensus 255 ~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~----~~~~~~~~l~~~i~~ll~~~~~~ 328 (350)
T cd03785 255 L--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIP----QEELTPERLAAALLELLSDPERL 328 (350)
T ss_pred E--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEe----cCCCCHHHHHHHHHHHhcCHHHH
Confidence 6 9999999999999999999999986 468999999999999999996 23468999999999999841 12
Q ss_pred HHHHHHHHH
Q 044441 318 KQIRRKAKE 326 (333)
Q Consensus 318 ~~~~~~a~~ 326 (333)
+.+++++++
T Consensus 329 ~~~~~~~~~ 337 (350)
T cd03785 329 KAMAEAARS 337 (350)
T ss_pred HHHHHHHHh
Confidence 334444444
No 34
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.60 E-value=1.1e-13 Score=129.93 Aligned_cols=238 Identities=18% Similarity=0.223 Sum_probs=143.5
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHH--HHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccccc
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAA--YQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINR 82 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A--~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 82 (333)
...+.+++++++||+||++...+....+. ..+++|.+.+.+.... +.
T Consensus 93 ~~~l~~~l~~~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~td~~~------~~------------------------- 141 (380)
T PRK13609 93 RKRLKLLLQAEKPDIVINTFPIIAVPELKKQTGISIPTYNVLTDFCL------HK------------------------- 141 (380)
T ss_pred HHHHHHHHHHhCcCEEEEcChHHHHHHHHHhcCCCCCeEEEeCCCCC------Cc-------------------------
Confidence 36788899999999999984433333332 3356887753321100 00
Q ss_pred ccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhc-cC-CCCeeecC-cCcCCCCCCCChhHHHHhhcCCC
Q 044441 83 FMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPS-LM-ENEIVPVG-PLVQESIFKEDDTKIMDWLSQKE 159 (333)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~-~~-~~~~~~vG-pl~~~~~~~~~~~~l~~~l~~~~ 159 (333)
...... ++.+++.+...-+ .+.. .. ++++..+| |+............+..-++-.+
T Consensus 142 ---------------~~~~~~-ad~i~~~s~~~~~-----~l~~~gi~~~ki~v~G~p~~~~f~~~~~~~~~~~~~~l~~ 200 (380)
T PRK13609 142 ---------------IWVHRE-VDRYFVATDHVKK-----VLVDIGVPPEQVVETGIPIRSSFELKINPDIIYNKYQLCP 200 (380)
T ss_pred ---------------ccccCC-CCEEEECCHHHHH-----HHHHcCCChhHEEEECcccChHHcCcCCHHHHHHHcCCCC
Confidence 001223 6666665522111 1111 11 23566677 44221110111222333333334
Q ss_pred CCeEEEEEecCcccCCHHHHHHHHHHHhcC-CCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch-hh
Q 044441 160 PWSVVFVSFGSEYFLSKDEMHEIASGLLLS-EVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA-KI 237 (333)
Q Consensus 160 ~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~-~l 237 (333)
+++++++..|+.... ..+..+++++.+. +.++++..+.+.. +-+.+.+..+....++.+.+|+++. ++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~--------~~~~l~~~~~~~~~~v~~~g~~~~~~~l 270 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA--------LKQSLEDLQETNPDALKVFGYVENIDEL 270 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH--------HHHHHHHHHhcCCCcEEEEechhhHHHH
Confidence 456788878887532 2345666666543 4566666553210 0011111111133589999999875 78
Q ss_pred ccccccceeEeecCchhHHHHHHhCcceecc-ccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcC
Q 044441 238 LRHGRIGGFLSHCGWGSAVEGMVFGVPIIAM-PMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 238 l~~~~~~~~I~hgG~~s~~eal~~GvP~i~~-P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
+..+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++.|+|+... +.+++.++|.+++++
T Consensus 271 ~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~--------~~~~l~~~i~~ll~~ 338 (380)
T PRK13609 271 FRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAVVIR--------DDEEVFAKTEALLQD 338 (380)
T ss_pred HHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEEEEC--------CHHHHHHHHHHHHCC
Confidence 898887 99999989999999999999985 77788889999999999998763 679999999999984
No 35
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.60 E-value=1.7e-13 Score=127.48 Aligned_cols=243 Identities=19% Similarity=0.165 Sum_probs=144.0
Q ss_pred HHHHHHhhcCCCEEEEcC-C-chhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccccccc
Q 044441 7 AFCNILETLKPTLVMYDL-F-QPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINRFM 84 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~-~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 84 (333)
.+.+++++.+||+|++.. . ...+..+++..++|.|.+.... .+
T Consensus 82 ~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~-----------------~~------------------ 126 (357)
T PRK00726 82 QARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA-----------------VP------------------ 126 (357)
T ss_pred HHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC-----------------Cc------------------
Confidence 456778889999999984 2 4455667888899998642110 00
Q ss_pred CCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCCChhHHHHhhcCCCCCeEE
Q 044441 85 HPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKEDDTKIMDWLSQKEPWSVV 164 (333)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~~~v 164 (333)
. ...++ .... ++.+++.+...+ . ...+.++.++|+-+....... . ....-+...++.++|
T Consensus 127 ---~----~~~r~--~~~~-~d~ii~~~~~~~-------~-~~~~~~i~vi~n~v~~~~~~~-~-~~~~~~~~~~~~~~i 186 (357)
T PRK00726 127 ---G----LANKL--LARF-AKKVATAFPGAF-------P-EFFKPKAVVTGNPVREEILAL-A-APPARLAGREGKPTL 186 (357)
T ss_pred ---c----HHHHH--HHHH-hchheECchhhh-------h-ccCCCCEEEECCCCChHhhcc-c-chhhhccCCCCCeEE
Confidence 0 00111 1222 455544332111 0 122357888885543211000 0 111112222334467
Q ss_pred EEEecCcccCCHHHHHHHHHHHhcCCC--cEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccc-hhhcccc
Q 044441 165 FVSFGSEYFLSKDEMHEIASGLLLSEV--SFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQ-AKILRHG 241 (333)
Q Consensus 165 ~vs~Gs~~~~~~~~~~~~~~~l~~~~~--~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~-~~ll~~~ 241 (333)
++..|+... ......+.+++.+... .++|.++.... +.+.+..+ ..-++.+.+|+.+ .+++..+
T Consensus 187 ~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~~----------~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~ 253 (357)
T PRK00726 187 LVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGDL----------EEVRAAYA-AGINAEVVPFIDDMAAAYAAA 253 (357)
T ss_pred EEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCcH----------HHHHHHhh-cCCcEEEeehHhhHHHHHHhC
Confidence 766665432 1222223355444322 44566664321 11111121 1113777888854 4789977
Q ss_pred ccceeEeecCchhHHHHHHhCcceecccc----ccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcch
Q 044441 242 RIGGFLSHCGWGSAVEGMVFGVPIIAMPM----VYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEG 317 (333)
Q Consensus 242 ~~~~~I~hgG~~s~~eal~~GvP~i~~P~----~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~ 317 (333)
++ +|+|+|.++++||+++|+|+|++|. .+||..|+..+.+.|.|+.+. .++++++++.++|+++++ +
T Consensus 254 d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~----~~~~~~~~l~~~i~~ll~---~ 324 (357)
T PRK00726 254 DL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIP----QSDLTPEKLAEKLLELLS---D 324 (357)
T ss_pred CE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEE----cccCCHHHHHHHHHHHHc---C
Confidence 77 9999999999999999999999997 468999999999999999997 355789999999999998 4
Q ss_pred HHHHHHHHH
Q 044441 318 KQIRRKAKE 326 (333)
Q Consensus 318 ~~~~~~a~~ 326 (333)
+.++++..+
T Consensus 325 ~~~~~~~~~ 333 (357)
T PRK00726 325 PERLEAMAE 333 (357)
T ss_pred HHHHHHHHH
Confidence 444444433
No 36
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.57 E-value=2.3e-16 Score=130.92 Aligned_cols=136 Identities=24% Similarity=0.332 Sum_probs=94.0
Q ss_pred EEEEEecCcccCC-HHHHHHHHHHHhc--CCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccc-hhhc
Q 044441 163 VVFVSFGSEYFLS-KDEMHEIASGLLL--SEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQ-AKIL 238 (333)
Q Consensus 163 ~v~vs~Gs~~~~~-~~~~~~~~~~l~~--~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~-~~ll 238 (333)
+|+|+.||.+... .+.+..+...+.. ....+++.++...... ....... ...++.+.+|.++ .+++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~--~~~~~~~--------~~~~v~~~~~~~~m~~~m 70 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEE--LKIKVEN--------FNPNVKVFGFVDNMAELM 70 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHH--HCCCHCC--------TTCCCEEECSSSSHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHH--HHHHHhc--------cCCcEEEEechhhHHHHH
Confidence 5899999886421 1122223333322 2467788877542110 0000111 2258899999995 5899
Q ss_pred cccccceeEeecCchhHHHHHHhCcceecccccc----chhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcC
Q 044441 239 RHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVY----EQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 239 ~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~----DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
..+++ +|||||+||++|++++|+|+|++|... +|..||..+++.|+|+.+. ....+.++|.++|.+++.+
T Consensus 71 ~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~----~~~~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 71 AAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLD----ESELNPEELAEAIEELLSD 144 (167)
T ss_dssp HHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSE----CCC-SCCCHHHHHHCHCCC
T ss_pred HHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccC----cccCCHHHHHHHHHHHHcC
Confidence 98877 999999999999999999999999988 9999999999999999997 4567799999999999983
No 37
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.55 E-value=2.2e-12 Score=121.18 Aligned_cols=178 Identities=17% Similarity=0.200 Sum_probs=109.3
Q ss_pred CCeeecCcCcCC-C-CCCCChhHHHHhhcCCCCCeEEEEEecCcccCCH-HHHHHHHHHHh-----cCCCcEEEEEecCC
Q 044441 130 NEIVPVGPLVQE-S-IFKEDDTKIMDWLSQKEPWSVVFVSFGSEYFLSK-DEMHEIASGLL-----LSEVSFIRVLRLHP 201 (333)
Q Consensus 130 ~~~~~vGpl~~~-~-~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~~l~-----~~~~~~i~~~~~~~ 201 (333)
+++..+|.-+.. . .......++.+-++-.+++++|++..|+.+.... ..+..+...+. ..+..+++.++.+.
T Consensus 173 ~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~ 252 (382)
T PLN02605 173 SQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK 252 (382)
T ss_pred HHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH
Confidence 456667733321 1 0111233455555555556688887777654332 22333332221 12345566666431
Q ss_pred CcchhhhhcCchhHHHHHHhcCCCeEEeccccch-hhccccccceeEeecCchhHHHHHHhCcceeccccccch-hhHHH
Q 044441 202 DEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA-KILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQ-SRNAK 279 (333)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~-~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ-~~na~ 279 (333)
. .. +.+.+.. ...++.+.+|+++. ++++.+|+ +|+.+|.+|+.||+++|+|+|+.+....| ..|+.
T Consensus 253 ~----~~----~~L~~~~--~~~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~ 320 (382)
T PLN02605 253 K----LQ----SKLESRD--WKIPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVP 320 (382)
T ss_pred H----HH----HHHHhhc--ccCCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHH
Confidence 0 00 1111110 23468888999876 78887777 99999999999999999999999765455 47999
Q ss_pred HHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcC-c-chHHHHHHHHHH
Q 044441 280 VVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQ-E-EGKQIRRKAKEM 327 (333)
Q Consensus 280 ~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~-~-~~~~~~~~a~~l 327 (333)
.+.+.|.|+.+. +++++.++|.+++.+ . ..+.+++++++.
T Consensus 321 ~i~~~g~g~~~~--------~~~~la~~i~~ll~~~~~~~~~m~~~~~~~ 362 (382)
T PLN02605 321 YVVDNGFGAFSE--------SPKEIARIVAEWFGDKSDELEAMSENALKL 362 (382)
T ss_pred HHHhCCceeecC--------CHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999998763 889999999999984 1 122444554443
No 38
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.45 E-value=2.2e-12 Score=121.15 Aligned_cols=264 Identities=12% Similarity=0.101 Sum_probs=146.9
Q ss_pred hHHHHHHHhhcCCCEEEE-cCCchh--HHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCcccccccc
Q 044441 5 KPAFCNILETLKPTLVMY-DLFQPW--AAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKIN 81 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~-D~~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 81 (333)
.....+++++++||+||. |..++. ...+|+.+|||.+.+.+... + ++
T Consensus 78 ~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~-w-aw---------------------------- 127 (385)
T TIGR00215 78 RKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQV-W-AW---------------------------- 127 (385)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcH-h-hc----------------------------
Confidence 346778889999999995 643333 33488999999997642111 0 00
Q ss_pred cccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecC-cCcCCCCC-CCChhHHHHhhcCCC
Q 044441 82 RFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVG-PLVQESIF-KEDDTKIMDWLSQKE 159 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vG-pl~~~~~~-~~~~~~l~~~l~~~~ 159 (333)
+. .+.+..... ++.+++.+ +.+.+++ .. .+.+..+|| |+...... .....+..+-++-.+
T Consensus 128 ------~~-----~~~r~l~~~-~d~v~~~~--~~e~~~~---~~-~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~ 189 (385)
T TIGR00215 128 ------RK-----WRAKKIEKA-TDFLLAIL--PFEKAFY---QK-KNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDH 189 (385)
T ss_pred ------Cc-----chHHHHHHH-HhHhhccC--CCcHHHH---Hh-cCCCEEEECCchhhhccccCCCHHHHHHHcCCCC
Confidence 00 001111112 34343332 1222222 11 223567899 44332111 012233333344444
Q ss_pred CCeEEEEEecCcccCCHHHHHHHHHHHhc---C--CCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccc
Q 044441 160 PWSVVFVSFGSEYFLSKDEMHEIASGLLL---S--EVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQ 234 (333)
Q Consensus 160 ~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~---~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 234 (333)
++++|.+..||....-...+..+++++.. . +..+++......+.. . + +.+.++.. ....+.+..+ ..
T Consensus 190 ~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~-~----~-~~~~~~~~-~~~~v~~~~~-~~ 261 (385)
T TIGR00215 190 NGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRL-Q----F-EQIKAEYG-PDLQLHLIDG-DA 261 (385)
T ss_pred CCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHH-H----H-HHHHHHhC-CCCcEEEECc-hH
Confidence 56788888888765223344455544432 2 334544433221110 0 0 11111110 1112322221 22
Q ss_pred hhhccccccceeEeecCchhHHHHHHhCcceecc----cccc---------chhhHHHHHhHhCeeeEeecCccCCCcCH
Q 044441 235 AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAM----PMVY---------EQSRNAKVVVDIGMGMDVPRDKINQRLRR 301 (333)
Q Consensus 235 ~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~----P~~~---------DQ~~na~~~~~~G~g~~l~~~~~~~~~~~ 301 (333)
..+++.+|+ +|+.+|..|+ |++++|+|+|++ |+.. .|..|+..+.+.|+...+. .+.+|+
T Consensus 262 ~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~----q~~~~~ 334 (385)
T TIGR00215 262 RKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELL----QEECTP 334 (385)
T ss_pred HHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhc----CCCCCH
Confidence 357776666 9999999888 999999999999 8743 2888999999999999986 577999
Q ss_pred HHHHHHHHHHhcCc-----chHHHHHHHHHHHHHh
Q 044441 302 EEVARVIKHVLLQE-----EGKQIRRKAKEMSERM 331 (333)
Q Consensus 302 ~~l~~ai~~vl~~~-----~~~~~~~~a~~l~~~~ 331 (333)
+.+.+++.++|.|. ..+.+++..+++.+.+
T Consensus 335 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l 369 (385)
T TIGR00215 335 HPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI 369 (385)
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh
Confidence 99999999999843 2234555555555444
No 39
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.41 E-value=4.4e-11 Score=110.64 Aligned_cols=75 Identities=27% Similarity=0.396 Sum_probs=64.8
Q ss_pred chhhccccccceeEeecCchhHHHHHHhCcceeccccc---cchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHH
Q 044441 234 QAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMV---YEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKH 310 (333)
Q Consensus 234 ~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~---~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~ 310 (333)
...++..+++ +|+++|.++++||+++|+|+|++|.. .+|..|+..+++.|.|..+. ..+.+++++.+++++
T Consensus 244 ~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~----~~~~~~~~l~~~i~~ 317 (348)
T TIGR01133 244 MAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIR----QKELLPEKLLEALLK 317 (348)
T ss_pred HHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEe----cccCCHHHHHHHHHH
Confidence 3478887777 99999988999999999999999863 47888999999999999986 345689999999999
Q ss_pred HhcC
Q 044441 311 VLLQ 314 (333)
Q Consensus 311 vl~~ 314 (333)
++.+
T Consensus 318 ll~~ 321 (348)
T TIGR01133 318 LLLD 321 (348)
T ss_pred HHcC
Confidence 9983
No 40
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.32 E-value=1.2e-10 Score=103.45 Aligned_cols=185 Identities=15% Similarity=0.219 Sum_probs=125.6
Q ss_pred CcEEEecchhhhchhHHhh-hhccCCCCeeecCcCcCCCC-CCCChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHH
Q 044441 105 CKFVFIKTSREIESKYLDY-FPSLMENEIVPVGPLVQESI-FKEDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEI 182 (333)
Q Consensus 105 ~~~~lv~s~~~le~~~~~~-~~~~~~~~~~~vGpl~~~~~-~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~ 182 (333)
-|.++|-..|++.-+.-.+ .......+++|+|.+ ..+- ..+.+ |... +++-.|+||-|.- ....+.+.+.
T Consensus 168 yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~v-q~~~~~~~~p-----~~~~-pE~~~Ilvs~GGG-~dG~eLi~~~ 239 (400)
T COG4671 168 YDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFV-QRSLPHLPLP-----PHEA-PEGFDILVSVGGG-ADGAELIETA 239 (400)
T ss_pred heEEEEecCccccChhhcCCccHhhhhheeEeEEe-eccCcCCCCC-----CcCC-CccceEEEecCCC-hhhHHHHHHH
Confidence 4667776655443321110 122234689999998 2210 01111 1111 3344888888873 4467777777
Q ss_pred HHHHhc-CCCc--EEEEEecCCCcchhhhhcCchhHHHHHHh---cCCCeEEeccccch-hhccccccceeEeecCchhH
Q 044441 183 ASGLLL-SEVS--FIRVLRLHPDEKITIEEALPQGFAEEIER---NNKGMLVQGWVPQA-KILRHGRIGGFLSHCGWGSA 255 (333)
Q Consensus 183 ~~~l~~-~~~~--~i~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~p~~-~ll~~~~~~~~I~hgG~~s~ 255 (333)
++|..- .+.+ .+..++.. +|+.-..++.. ..+++.+..|-.+. +++..++. +|+-||+||+
T Consensus 240 l~A~~~l~~l~~~~~ivtGP~----------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTv 307 (400)
T COG4671 240 LAAAQLLAGLNHKWLIVTGPF----------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTV 307 (400)
T ss_pred HHHhhhCCCCCcceEEEeCCC----------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhh
Confidence 777654 3444 33333321 45443333321 34789999998875 78887777 9999999999
Q ss_pred HHHHHhCcceeccccc---cchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 256 VEGMVFGVPIIAMPMV---YEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 256 ~eal~~GvP~i~~P~~---~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
+|.|++|+|.+++|.. -||..-|.|++++|+.-++. ++++++..++++|...++
T Consensus 308 CeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~----pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 308 CEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLL----PENLTPQNLADALKAALA 364 (400)
T ss_pred hHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeC----cccCChHHHHHHHHhccc
Confidence 9999999999999984 49999999999999999998 578999999999998887
No 41
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.30 E-value=3.9e-10 Score=106.16 Aligned_cols=259 Identities=14% Similarity=0.070 Sum_probs=139.8
Q ss_pred HHHHhhc--CCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCcccccccccccCC
Q 044441 9 CNILETL--KPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINRFMHP 86 (333)
Q Consensus 9 ~~~l~~~--~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 86 (333)
..+++++ +||+||+=-= +.+..+|...|+|++.+.+.=.... ....+ +.+.... +..+.
T Consensus 84 ~~~~~~~~~~p~~v~~~Gg-~v~~~aA~~~~~p~~~~~~~esn~~-~~~~~------~~~~~~~---------~~~~~-- 144 (396)
T TIGR03492 84 WRALRKWAKKGDLIVAVGD-IVPLLFAWLSGKPYAFVGTAKSDYY-WESGP------RRSPSDE---------YHRLE-- 144 (396)
T ss_pred HHHHHHHhhcCCEEEEECc-HHHHHHHHHcCCCceEEEeecccee-ecCCC------CCccchh---------hhccC--
Confidence 3457788 9999997622 2388889999999999654321110 00000 0000000 00000
Q ss_pred CCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecC-cCcCCCCCCCChhHHHHhhcCCCCCeEEE
Q 044441 87 TANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVG-PLVQESIFKEDDTKIMDWLSQKEPWSVVF 165 (333)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~l~~~l~~~~~~~~v~ 165 (333)
.....++.+..-.-.. ++.+++.+ +...++ ++. .+-++.+|| |+...-... ... .-.++++++.
T Consensus 145 -G~~~~p~e~n~l~~~~-a~~v~~~~--~~t~~~---l~~-~g~k~~~vGnPv~d~l~~~-~~~------~l~~~~~~ll 209 (396)
T TIGR03492 145 -GSLYLPWERWLMRSRR-CLAVFVRD--RLTARD---LRR-QGVRASYLGNPMMDGLEPP-ERK------PLLTGRFRIA 209 (396)
T ss_pred -CCccCHHHHHHhhchh-hCEEeCCC--HHHHHH---HHH-CCCeEEEeCcCHHhcCccc-ccc------ccCCCCCEEE
Confidence 0000111111111222 55666554 222222 222 224799999 665431110 001 1123346899
Q ss_pred EEecCcccCCHHHHHHHHHHHhc----CCCcEEEEEecCCCcchhhhhcCch-hHHH---------HHHhcCCCeEEecc
Q 044441 166 VSFGSEYFLSKDEMHEIASGLLL----SEVSFIRVLRLHPDEKITIEEALPQ-GFAE---------EIERNNKGMLVQGW 231 (333)
Q Consensus 166 vs~Gs~~~~~~~~~~~~~~~l~~----~~~~~i~~~~~~~~~~~~~~~~l~~-~~~~---------~~~~~~~~~~~~~~ 231 (333)
+-.||........+..+++++.. .+..+++.+......+. ....+.+ ++.. .+ ..+++.+..+
T Consensus 210 lLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~-~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~v~~~ 286 (396)
T TIGR03492 210 LLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEK-LQAILEDLGWQLEGSSEDQTSLF--QKGTLEVLLG 286 (396)
T ss_pred EECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHH-HHHHHHhcCceecCCccccchhh--ccCceEEEec
Confidence 99999865333334455555543 35677777743221110 0000000 0000 00 1123455445
Q ss_pred ccc-hhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHh----CeeeEeecCccCCCcCHHHHHH
Q 044441 232 VPQ-AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDI----GMGMDVPRDKINQRLRREEVAR 306 (333)
Q Consensus 232 ~p~-~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~----G~g~~l~~~~~~~~~~~~~l~~ 306 (333)
..+ .++++.+++ +||.+|..| .|+++.|+|+|++|....|. |+...++. |.++.+. ..+.+.+.+
T Consensus 287 ~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~------~~~~~~l~~ 356 (396)
T TIGR03492 287 RGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLA------SKNPEQAAQ 356 (396)
T ss_pred hHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecC------CCCHHHHHH
Confidence 444 468887777 999999776 99999999999999877887 99887774 7777774 245599999
Q ss_pred HHHHHhcC
Q 044441 307 VIKHVLLQ 314 (333)
Q Consensus 307 ai~~vl~~ 314 (333)
++.++++|
T Consensus 357 ~l~~ll~d 364 (396)
T TIGR03492 357 VVRQLLAD 364 (396)
T ss_pred HHHHHHcC
Confidence 99999983
No 42
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.29 E-value=1.5e-10 Score=104.00 Aligned_cols=105 Identities=17% Similarity=0.201 Sum_probs=76.5
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcC--CCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch-hhc
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLS--EVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA-KIL 238 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~-~ll 238 (333)
+.|+|++|+.... .....++++|.+. +..+.++++..... .+.+.+..+ ...|+.+..|+++. ++|
T Consensus 171 ~~iLi~~GG~d~~--~~~~~~l~~l~~~~~~~~i~vv~G~~~~~--------~~~l~~~~~-~~~~i~~~~~~~~m~~lm 239 (279)
T TIGR03590 171 RRVLVSFGGADPD--NLTLKLLSALAESQINISITLVTGSSNPN--------LDELKKFAK-EYPNIILFIDVENMAELM 239 (279)
T ss_pred CeEEEEeCCcCCc--CHHHHHHHHHhccccCceEEEEECCCCcC--------HHHHHHHHH-hCCCEEEEeCHHHHHHHH
Confidence 5789999976532 2445566666553 45677777654221 122222221 34588899999987 799
Q ss_pred cccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHH
Q 044441 239 RHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKV 280 (333)
Q Consensus 239 ~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~ 280 (333)
..+++ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 240 ~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 240 NEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 98877 999999 9999999999999999999999999975
No 43
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.28 E-value=1.9e-10 Score=107.85 Aligned_cols=244 Identities=14% Similarity=0.095 Sum_probs=122.8
Q ss_pred hHHHHHHHhhcCCCEEEE-cCCchhH--HHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCcccccccc
Q 044441 5 KPAFCNILETLKPTLVMY-DLFQPWA--AEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKIN 81 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~-D~~~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 81 (333)
...+.+++++++||+|++ +....+. ...|++.|||.+.+....... +
T Consensus 74 ~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~~--------------------~---------- 123 (380)
T PRK00025 74 RRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVWA--------------------W---------- 123 (380)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchhh--------------------c----------
Confidence 346778889999999875 4222233 344778899988753211000 0
Q ss_pred cccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecC-cCcCCCCCCCChhHHHHhhcCCCC
Q 044441 82 RFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVG-PLVQESIFKEDDTKIMDWLSQKEP 160 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~l~~~l~~~~~ 160 (333)
.. .+....... ++.+++.+-. +.+.+ .. .+-++.++| |+............+.+.+...++
T Consensus 124 ------~~-----~~~~~~~~~-~d~i~~~~~~--~~~~~---~~-~g~~~~~~G~p~~~~~~~~~~~~~~~~~l~~~~~ 185 (380)
T PRK00025 124 ------RQ-----GRAFKIAKA-TDHVLALFPF--EAAFY---DK-LGVPVTFVGHPLADAIPLLPDRAAARARLGLDPD 185 (380)
T ss_pred ------Cc-----hHHHHHHHH-HhhheeCCcc--CHHHH---Hh-cCCCeEEECcCHHHhcccccChHHHHHHcCCCCC
Confidence 00 001112222 4555554421 11211 11 122477888 332211111112334444444444
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHh---c--CCCcEEEEEecCCCcchhhhhcCchhHHHHHHhc-CCCeEEeccccc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLL---L--SEVSFIRVLRLHPDEKITIEEALPQGFAEEIERN-NKGMLVQGWVPQ 234 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~---~--~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~p~ 234 (333)
+++|++..||...........+++++. + .+..++|..+.+... +.+.+..+.. .-++.+ +-+.
T Consensus 186 ~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~---------~~~~~~~~~~~~~~v~~--~~~~ 254 (380)
T PRK00025 186 ARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRR---------EQIEEALAEYAGLEVTL--LDGQ 254 (380)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhH---------HHHHHHHhhcCCCCeEE--Eccc
Confidence 557777777765321222344444433 2 134566654322111 1122212111 113333 2232
Q ss_pred -hhhccccccceeEeecCchhHHHHHHhCcceecccccc--------chhhH-----HHHHhHhCeeeEeecCccCCCcC
Q 044441 235 -AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVY--------EQSRN-----AKVVVDIGMGMDVPRDKINQRLR 300 (333)
Q Consensus 235 -~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~--------DQ~~n-----a~~~~~~G~g~~l~~~~~~~~~~ 300 (333)
..+++.+++ +|+.+|.+++ |++++|+|+|+.|... +|..| +..+.+.|++..+. ....+
T Consensus 255 ~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~ 327 (380)
T PRK00025 255 KREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELL----QEEAT 327 (380)
T ss_pred HHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhc----CCCCC
Confidence 367786776 9999998877 9999999999985431 22222 23333333333332 35678
Q ss_pred HHHHHHHHHHHhcC
Q 044441 301 REEVARVIKHVLLQ 314 (333)
Q Consensus 301 ~~~l~~ai~~vl~~ 314 (333)
++++.+++.++++|
T Consensus 328 ~~~l~~~i~~ll~~ 341 (380)
T PRK00025 328 PEKLARALLPLLAD 341 (380)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999984
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.04 E-value=1.8e-07 Score=85.98 Aligned_cols=256 Identities=13% Similarity=0.039 Sum_probs=139.5
Q ss_pred HHHHHHHhhcCCCEEEEcCC---chhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccccc
Q 044441 6 PAFCNILETLKPTLVMYDLF---QPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINR 82 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~---~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 82 (333)
..+.+.+++.+||+|++... ...+..++++.++|++........... ... ..
T Consensus 73 ~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~-------~~---------------- 127 (364)
T cd03814 73 RRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYL--RYY-------GL---------------- 127 (364)
T ss_pred hhHHHHHHhcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHh--hhc-------cc----------------
Confidence 45667778889999987633 344667788899999886543221100 000 00
Q ss_pred ccCCCCCCchh-hHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCC---CCCCChhHHHHhhcCC
Q 044441 83 FMHPTANGTLN-KDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQES---IFKEDDTKIMDWLSQK 158 (333)
Q Consensus 83 ~~~~~~~~~~~-~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~---~~~~~~~~l~~~l~~~ 158 (333)
...... .......... ++.+++.|....+. .......++..+.+-.... +..........+ .
T Consensus 128 -----~~~~~~~~~~~~~~~~~-~d~i~~~s~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~-- 193 (364)
T cd03814 128 -----GPLSWLAWAYLRWFHNR-ADRVLVPSPSLADE-----LRARGFRRVRLWPRGVDTELFHPRRRDEALRARL-G-- 193 (364)
T ss_pred -----chHhHhhHHHHHHHHHh-CCEEEeCCHHHHHH-----HhccCCCceeecCCCccccccCcccccHHHHHHh-C--
Confidence 000000 1111223344 78888877554331 2222223444443322211 001111112222 2
Q ss_pred CCCeEEEEEecCccc-CCHHHHHHHHHHHhcC-CCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch-
Q 044441 159 EPWSVVFVSFGSEYF-LSKDEMHEIASGLLLS-EVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA- 235 (333)
Q Consensus 159 ~~~~~v~vs~Gs~~~-~~~~~~~~~~~~l~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~- 235 (333)
..++.+++..|+... ...+.+.+++..+... +..+ +.++..... ..+. ....++.+.+|+++.
T Consensus 194 ~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l-~i~G~~~~~---------~~~~----~~~~~v~~~g~~~~~~ 259 (364)
T cd03814 194 PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRL-VIVGDGPAR---------ARLE----ARYPNVHFLGFLDGEE 259 (364)
T ss_pred CCCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceE-EEEeCCchH---------HHHh----ccCCcEEEEeccCHHH
Confidence 222366677787653 2344555555555432 3343 344432211 0010 145689999998876
Q ss_pred --hhccccccceeEeecC----chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHH
Q 044441 236 --KILRHGRIGGFLSHCG----WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIK 309 (333)
Q Consensus 236 --~ll~~~~~~~~I~hgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~ 309 (333)
.++..+++ +|+.+. .++++||+++|+|+|+.+..+ +...+++.+.|..+. .-+.+++.++|.
T Consensus 260 ~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~~~g~~~~------~~~~~~l~~~i~ 327 (364)
T cd03814 260 LAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDGENGLLVE------PGDAEAFAAALA 327 (364)
T ss_pred HHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCCcceEEcC------CCCHHHHHHHHH
Confidence 47887776 886654 478999999999999987654 555667778998885 246788999999
Q ss_pred HHhcC-cchHHHHHHHHH
Q 044441 310 HVLLQ-EEGKQIRRKAKE 326 (333)
Q Consensus 310 ~vl~~-~~~~~~~~~a~~ 326 (333)
+++.+ +..+.+.+++++
T Consensus 328 ~l~~~~~~~~~~~~~~~~ 345 (364)
T cd03814 328 ALLADPELRRRMAARARA 345 (364)
T ss_pred HHHcCHHHHHHHHHHHHH
Confidence 99984 212334444444
No 45
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.97 E-value=1.9e-07 Score=88.96 Aligned_cols=83 Identities=17% Similarity=0.287 Sum_probs=61.7
Q ss_pred hhccccccceeEee-----cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHH
Q 044441 236 KILRHGRIGGFLSH-----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKH 310 (333)
Q Consensus 236 ~ll~~~~~~~~I~h-----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~ 310 (333)
.+++.+++ ++.. +|..+++||+++|+|+|+-|..+++......+.+.|+++... +++++.++|.+
T Consensus 315 ~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~--------d~~~La~~l~~ 384 (425)
T PRK05749 315 LLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVE--------DAEDLAKAVTY 384 (425)
T ss_pred HHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEEC--------CHHHHHHHHHH
Confidence 56676665 4432 345569999999999999998888888888777778777763 78999999999
Q ss_pred HhcC-cchHHHHHHHHHHH
Q 044441 311 VLLQ-EEGKQIRRKAKEMS 328 (333)
Q Consensus 311 vl~~-~~~~~~~~~a~~l~ 328 (333)
++++ +..+.+.+++++..
T Consensus 385 ll~~~~~~~~m~~~a~~~~ 403 (425)
T PRK05749 385 LLTDPDARQAYGEAGVAFL 403 (425)
T ss_pred HhcCHHHHHHHHHHHHHHH
Confidence 9984 22345666666554
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.96 E-value=4.1e-07 Score=87.81 Aligned_cols=140 Identities=12% Similarity=0.119 Sum_probs=87.5
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCC-CcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch---hhc
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSE-VSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA---KIL 238 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~---~ll 238 (333)
.+++..|+... .+.+..++++++..+ ..+ ..+|..... +.+.+.. ...++.+.++++.. .++
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l-~ivG~G~~~---------~~l~~~~--~~~~V~f~G~v~~~ev~~~~ 329 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARL-AFVGDGPYR---------EELEKMF--AGTPTVFTGMLQGDELSQAY 329 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEE-EEEeCChHH---------HHHHHHh--ccCCeEEeccCCHHHHHHHH
Confidence 45566687653 344566677776653 444 444532111 2222222 34578888999754 577
Q ss_pred cccccceeEeecC----chhHHHHHHhCcceeccccccchhhHHHHHhH---hCeeeEeecCccCCCcCHHHHHHHHHHH
Q 044441 239 RHGRIGGFLSHCG----WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVD---IGMGMDVPRDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 239 ~~~~~~~~I~hgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~---~G~g~~l~~~~~~~~~~~~~l~~ai~~v 311 (333)
+.+++ +|.-.. ..+++||+++|+|+|+....+ ....+++ .+.|..+.. -+.+++.++|.++
T Consensus 330 ~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~------~d~~~la~~i~~l 397 (465)
T PLN02871 330 ASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTP------GDVDDCVEKLETL 397 (465)
T ss_pred HHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCC------CCHHHHHHHHHHH
Confidence 77777 775433 457899999999999876432 3344455 578888852 3789999999999
Q ss_pred hcC-cchHHHHHHHHHHH
Q 044441 312 LLQ-EEGKQIRRKAKEMS 328 (333)
Q Consensus 312 l~~-~~~~~~~~~a~~l~ 328 (333)
+++ +.-..+.+++++..
T Consensus 398 l~~~~~~~~~~~~a~~~~ 415 (465)
T PLN02871 398 LADPELRERMGAAAREEV 415 (465)
T ss_pred HhCHHHHHHHHHHHHHHH
Confidence 984 22234556665544
No 47
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.94 E-value=1.6e-08 Score=92.93 Aligned_cols=175 Identities=18% Similarity=0.115 Sum_probs=101.5
Q ss_pred CCCeeecC-cCcCCCCCCCChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCc-EEEEEecCCCcchh
Q 044441 129 ENEIVPVG-PLVQESIFKEDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVS-FIRVLRLHPDEKIT 206 (333)
Q Consensus 129 ~~~~~~vG-pl~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~-~i~~~~~~~~~~~~ 206 (333)
+.++.||| |+...... .... + +++++|.+-.||...--...+..++++......+ ..+.+......
T Consensus 143 g~~~~~VGhPl~d~~~~--~~~~----~---~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~~--- 210 (347)
T PRK14089 143 QSKATYVGHPLLDEIKE--FKKD----L---DKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFKG--- 210 (347)
T ss_pred CCCCEEECCcHHHhhhh--hhhh----c---CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCcH---
Confidence 44688999 76543110 0111 2 2235899999998753334555444554433221 23333322111
Q ss_pred hhhcCchhHHHHHHhcCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceecc-ccccchhhHHHHHh---
Q 044441 207 IEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAM-PMVYEQSRNAKVVV--- 282 (333)
Q Consensus 207 ~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~-P~~~DQ~~na~~~~--- 282 (333)
+.+.+... ....+.+.+ ...+++..+++ .|+..|..|+ |++.+|+|+|+. ....-|+.||+++.
T Consensus 211 ------~~i~~~~~-~~~~~~~~~--~~~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~ 278 (347)
T PRK14089 211 ------KDLKEIYG-DISEFEISY--DTHKALLEAEF--AFICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLK 278 (347)
T ss_pred ------HHHHHHHh-cCCCcEEec--cHHHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCC
Confidence 11111110 111222222 22467887777 9999999999 999999999994 34568999999999
Q ss_pred HhCeeeEeec---------CccCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHh
Q 044441 283 DIGMGMDVPR---------DKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSERM 331 (333)
Q Consensus 283 ~~G~g~~l~~---------~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~ 331 (333)
..|++-.+.. .-..++.|++.+.+++.+. . .+++++...++.+.+
T Consensus 279 ~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~~-~---~~~~~~~~~~l~~~l 332 (347)
T PRK14089 279 HIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKEM-D---REKFFKKSKELREYL 332 (347)
T ss_pred eeehHHHhcCCCcccccCchhhcccCCHHHHHHHHHHH-H---HHHHHHHHHHHHHHh
Confidence 4566655521 0013568999999999873 2 456666666666554
No 48
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.90 E-value=9.2e-08 Score=89.00 Aligned_cols=133 Identities=18% Similarity=0.240 Sum_probs=83.7
Q ss_pred CCeEEEEEecCcccC-CHHHHHHHHHHHhcCCC-cEEEEEecCCCcchhhhhcCchhHHHHHHh-c--CCCeEEeccccc
Q 044441 160 PWSVVFVSFGSEYFL-SKDEMHEIASGLLLSEV-SFIRVLRLHPDEKITIEEALPQGFAEEIER-N--NKGMLVQGWVPQ 234 (333)
Q Consensus 160 ~~~~v~vs~Gs~~~~-~~~~~~~~~~~l~~~~~-~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~-~--~~~~~~~~~~p~ 234 (333)
+++.+++++|..... ..+.+..+++++..... .+.+......... +.+.+..++ . ..++.+.++...
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~--------~~l~~~~~~~~~~~~~v~~~~~~~~ 268 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTR--------PRIREAGLEFLGHHPNVLLISPLGY 268 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChH--------HHHHHHHHhhccCCCCEEEECCcCH
Confidence 345788888876543 35667778888766432 2333333221110 112211111 1 457777765554
Q ss_pred h---hhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHH
Q 044441 235 A---KILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 235 ~---~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~v 311 (333)
. .++..+++ +|+..| |.+.||++.|+|+|+++.. |. +..+.+.|++..+. -+.+++.++|.++
T Consensus 269 ~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~g~~~~~~-------~~~~~i~~~i~~l 334 (363)
T cd03786 269 LYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVESGTNVLVG-------TDPEAILAAIEKL 334 (363)
T ss_pred HHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhheeeEEecC-------CCHHHHHHHHHHH
Confidence 3 45665666 999999 7888999999999998643 22 44566678777763 1589999999999
Q ss_pred hcC
Q 044441 312 LLQ 314 (333)
Q Consensus 312 l~~ 314 (333)
+++
T Consensus 335 l~~ 337 (363)
T cd03786 335 LSD 337 (363)
T ss_pred hcC
Confidence 984
No 49
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.83 E-value=1.6e-07 Score=87.66 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=56.6
Q ss_pred CCCeEEeccccch---hhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCc
Q 044441 223 NKGMLVQGWVPQA---KILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRL 299 (333)
Q Consensus 223 ~~~~~~~~~~p~~---~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~ 299 (333)
..++.+.+.++.. .++..+++ +|+..|.. +.||+++|+|+|..+..+++.. +.+.|.++.+. .
T Consensus 254 ~~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~g~~~lv~-------~ 319 (365)
T TIGR00236 254 SKRVHLIEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEAGTNKLVG-------T 319 (365)
T ss_pred CCCEEEECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhcCceEEeC-------C
Confidence 4578887766654 45666665 99977644 7999999999999876555442 33467777663 3
Q ss_pred CHHHHHHHHHHHhc
Q 044441 300 RREEVARVIKHVLL 313 (333)
Q Consensus 300 ~~~~l~~ai~~vl~ 313 (333)
+++++.+++.++++
T Consensus 320 d~~~i~~ai~~ll~ 333 (365)
T TIGR00236 320 DKENITKAAKRLLT 333 (365)
T ss_pred CHHHHHHHHHHHHh
Confidence 78999999999997
No 50
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.80 E-value=4e-07 Score=84.34 Aligned_cols=249 Identities=15% Similarity=0.155 Sum_probs=133.1
Q ss_pred hHHHHHHHhhcCCCEEE-EcC--CchhHHHHHHHcCCC--eEEEechhHHHHHhhhccccCCCCCCCCcccCCCcccccc
Q 044441 5 KPAFCNILETLKPTLVM-YDL--FQPWAAEAAYQYHIA--AVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKK 79 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv-~D~--~~~~~~~~A~~lgiP--~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 79 (333)
...+.+.+.+.+||++| +|+ |..--.-.+++.|+| .|.+.+....
T Consensus 71 ~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~PqvW------------------------------ 120 (373)
T PF02684_consen 71 FRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISPQVW------------------------------ 120 (373)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECCcee------------------------------
Confidence 44566667788999877 783 455555667788988 5554432110
Q ss_pred cccccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecC-cCcCCCCCCCChhHHHHhhcCC
Q 044441 80 INRFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVG-PLVQESIFKEDDTKIMDWLSQK 158 (333)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~l~~~l~~~ 158 (333)
.| +. .|....... .|.+++ .+.||.+++. ..+-++.||| |+...-..........+.+ -.
T Consensus 121 ----AW--r~-----~R~~~i~~~-~D~ll~--ifPFE~~~y~----~~g~~~~~VGHPl~d~~~~~~~~~~~~~~~-l~ 181 (373)
T PF02684_consen 121 ----AW--RP-----GRAKKIKKY-VDHLLV--IFPFEPEFYK----KHGVPVTYVGHPLLDEVKPEPDRAEAREKL-LD 181 (373)
T ss_pred ----ee--Cc-----cHHHHHHHH-HhheeE--CCcccHHHHh----ccCCCeEEECCcchhhhccCCCHHHHHHhc-CC
Confidence 00 11 112222222 333322 2336666542 2335799999 8876522222233444444 33
Q ss_pred CCCeEEEEEecCcccCCHHHHHHHHHHHh---c--CCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccc-
Q 044441 159 EPWSVVFVSFGSEYFLSKDEMHEIASGLL---L--SEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWV- 232 (333)
Q Consensus 159 ~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~---~--~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~- 232 (333)
+++++|.+--||...-=...+..++++.+ + .+..+++.+... ...+ .+.+-.+....++.+.-..
T Consensus 182 ~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~--~~~~-------~i~~~~~~~~~~~~~~~~~~ 252 (373)
T PF02684_consen 182 PDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPE--VHEE-------LIEEILAEYPPDVSIVIIEG 252 (373)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCH--HHHH-------HHHHHHHhhCCCCeEEEcCC
Confidence 45679999999976422233344444433 2 244555443321 1100 0111110022233332222
Q ss_pred cchhhccccccceeEeecCchhHHHHHHhCcceecc-ccccchhhHHHHHhHhCe--------eeEeecCccCCCcCHHH
Q 044441 233 PQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAM-PMVYEQSRNAKVVVDIGM--------GMDVPRDKINQRLRREE 303 (333)
Q Consensus 233 p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~-P~~~DQ~~na~~~~~~G~--------g~~l~~~~~~~~~~~~~ 303 (333)
...+++..+++ .+.-.| ..++|+..+|+|||++ -...=.+.-|+++.+... |..+-+.=-.+..|++.
T Consensus 253 ~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~ 329 (373)
T PF02684_consen 253 ESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPEN 329 (373)
T ss_pred chHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHH
Confidence 23467787776 666655 5789999999999988 444556667777766431 11111100135689999
Q ss_pred HHHHHHHHhcC
Q 044441 304 VARVIKHVLLQ 314 (333)
Q Consensus 304 l~~ai~~vl~~ 314 (333)
+.+++.+++.+
T Consensus 330 i~~~~~~ll~~ 340 (373)
T PF02684_consen 330 IAAELLELLEN 340 (373)
T ss_pred HHHHHHHHhcC
Confidence 99999999984
No 51
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.80 E-value=1.6e-06 Score=80.54 Aligned_cols=93 Identities=22% Similarity=0.245 Sum_probs=67.1
Q ss_pred CCCeEEeccccch---hhccccccceeEee----------cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeE
Q 044441 223 NKGMLVQGWVPQA---KILRHGRIGGFLSH----------CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMD 289 (333)
Q Consensus 223 ~~~~~~~~~~p~~---~ll~~~~~~~~I~h----------gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~ 289 (333)
..++.+.+++|+. .+++.+++ +|.. |-.+++.||+++|+|+|+-+..+ ++..+.+.+.|..
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~~~g~~ 317 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVEDGETGLL 317 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheecCCeeEE
Confidence 5678888998865 46777776 6542 23579999999999999876543 6666777788988
Q ss_pred eecCccCCCcCHHHHHHHHHHHhcCcc-hHHHHHHHHHH
Q 044441 290 VPRDKINQRLRREEVARVIKHVLLQEE-GKQIRRKAKEM 327 (333)
Q Consensus 290 l~~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l 327 (333)
++ .-+.+++.++|.+++++.+ ..++++++++.
T Consensus 318 ~~------~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 350 (367)
T cd05844 318 VP------EGDVAALAAALGRLLADPDLRARMGAAGRRR 350 (367)
T ss_pred EC------CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 85 2478999999999998421 23455555543
No 52
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.76 E-value=4.7e-06 Score=76.83 Aligned_cols=264 Identities=17% Similarity=0.235 Sum_probs=149.1
Q ss_pred hHHHHHHHhhcCCCEEE-EcC-CchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccccc
Q 044441 5 KPAFCNILETLKPTLVM-YDL-FQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINR 82 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv-~D~-~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 82 (333)
...+.++++.++||++| ++. ..+.-..-+++.|+|.+.+..=.+ .- +++.
T Consensus 112 ~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS-~r---------------------------S~~~ 163 (419)
T COG1519 112 PIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNARLS-DR---------------------------SFAR 163 (419)
T ss_pred hHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeec-hh---------------------------hhHH
Confidence 45678889999999766 453 455566777889999999753211 00 0111
Q ss_pred ccCCCCCCchhhHhHHH-hhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCC-CCCCCChhHHHHhhcCCCC
Q 044441 83 FMHPTANGTLNKDRNLK-AFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQE-SIFKEDDTKIMDWLSQKEP 160 (333)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~-~~~~~~~~~l~~~l~~~~~ 160 (333)
+. .+..+.+ .+.+ .++++..|-.+-+ .+....-.++.-+|.+--. ........++..|-..-+.
T Consensus 164 y~--------k~~~~~~~~~~~-i~li~aQse~D~~-----Rf~~LGa~~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~ 229 (419)
T COG1519 164 YA--------KLKFLARLLFKN-IDLILAQSEEDAQ-----RFRSLGAKPVVVTGNLKFDIEPPPQLAAELAALRRQLGG 229 (419)
T ss_pred HH--------HHHHHHHHHHHh-cceeeecCHHHHH-----HHHhcCCcceEEecceeecCCCChhhHHHHHHHHHhcCC
Confidence 11 1222332 3444 7788887733222 2333333458888888332 2112223333333222222
Q ss_pred -CeEEEEEecCcccCCHHHHHHHHHHHhcC--CCcEEEEEecCCCcchhhhhcCchhHHHHH--------Hh----cCCC
Q 044441 161 -WSVVFVSFGSEYFLSKDEMHEIASGLLLS--EVSFIRVLRLHPDEKITIEEALPQGFAEEI--------ER----NNKG 225 (333)
Q Consensus 161 -~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~--------~~----~~~~ 225 (333)
+ .+.|..+| .....+....+..+|.+. +...||+=. +.+...+.+ +..++. +. ...+
T Consensus 230 ~r-~v~iaaST-H~GEeei~l~~~~~l~~~~~~~llIlVPR-HpERf~~v~-----~l~~~~gl~~~~rS~~~~~~~~td 301 (419)
T COG1519 230 HR-PVWVAAST-HEGEEEIILDAHQALKKQFPNLLLILVPR-HPERFKAVE-----NLLKRKGLSVTRRSQGDPPFSDTD 301 (419)
T ss_pred CC-ceEEEecC-CCchHHHHHHHHHHHHhhCCCceEEEecC-ChhhHHHHH-----HHHHHcCCeEEeecCCCCCCCCCc
Confidence 3 56677777 334556666777777654 345555533 222111111 011000 00 1224
Q ss_pred eEEeccccch-hhccccccc----eeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcC
Q 044441 226 MLVQGWVPQA-KILRHGRIG----GFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLR 300 (333)
Q Consensus 226 ~~~~~~~p~~-~ll~~~~~~----~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~ 300 (333)
+.+.+-+.-. .+++-+++. -++-+||+| .+|++++|+|+|.=|+..-|..-++++.+.|+|+.++ +
T Consensus 302 V~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~--------~ 372 (419)
T COG1519 302 VLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVE--------D 372 (419)
T ss_pred EEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEEC--------C
Confidence 4444433322 233333321 135688887 7899999999999999999999999999999999995 4
Q ss_pred HHHHHHHHHHHhcC-cchHHHHHHHHHH
Q 044441 301 REEVARVIKHVLLQ-EEGKQIRRKAKEM 327 (333)
Q Consensus 301 ~~~l~~ai~~vl~~-~~~~~~~~~a~~l 327 (333)
++.+.+++..++.+ +..+.|.+++.++
T Consensus 373 ~~~l~~~v~~l~~~~~~r~~~~~~~~~~ 400 (419)
T COG1519 373 ADLLAKAVELLLADEDKREAYGRAGLEF 400 (419)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 78888888888874 2234454554443
No 53
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.73 E-value=1.2e-06 Score=84.98 Aligned_cols=267 Identities=14% Similarity=0.118 Sum_probs=142.6
Q ss_pred hHHHHHHHhhcCCCEEE-EcC--CchhHHHHHHHcCC--CeEEEechhHHHHHhhhccccCCCCCCCCcccCCCcccccc
Q 044441 5 KPAFCNILETLKPTLVM-YDL--FQPWAAEAAYQYHI--AAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKK 79 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv-~D~--~~~~~~~~A~~lgi--P~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 79 (333)
...+.+.+++.+||++| .|. |..--.-.+++.|+ |.|.+.+.....
T Consensus 299 ~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqVWA----------------------------- 349 (608)
T PRK01021 299 YRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSIWA----------------------------- 349 (608)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcccee-----------------------------
Confidence 45566667778999888 583 45555667788996 988865432110
Q ss_pred cccccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecC-cCcCCCCCCCChhHHHHhhcCC
Q 044441 80 INRFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVG-PLVQESIFKEDDTKIMDWLSQK 158 (333)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~l~~~l~~~ 158 (333)
| +.+ |.....+. .|.+++ ...+|.+++. ..+-++.||| |+...-......++..+-++-.
T Consensus 350 -----W--R~~-----Rikki~k~-vD~ll~--IfPFE~~~y~----~~gv~v~yVGHPL~d~i~~~~~~~~~r~~lgl~ 410 (608)
T PRK01021 350 -----W--RPK-----RKTILEKY-LDLLLL--ILPFEQNLFK----DSPLRTVYLGHPLVETISSFSPNLSWKEQLHLP 410 (608)
T ss_pred -----e--Ccc-----hHHHHHHH-hhhhee--cCccCHHHHH----hcCCCeEEECCcHHhhcccCCCHHHHHHHcCCC
Confidence 0 111 12222221 232222 2336666543 2355799999 8876522222334445555555
Q ss_pred CCCeEEEEEecCcccCCHHHHHHHHHHHh--cC--CCcEEEEEecCCCcchhhhhcCchhHHHHHHhcC-CCeEEecccc
Q 044441 159 EPWSVVFVSFGSEYFLSKDEMHEIASGLL--LS--EVSFIRVLRLHPDEKITIEEALPQGFAEEIERNN-KGMLVQGWVP 233 (333)
Q Consensus 159 ~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~--~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~p 233 (333)
+++++|-+-.||...-=...+..++++.+ .. +..++...... .. .+.+.+..+... -.+.+..--.
T Consensus 411 ~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~--~~-------~~~i~~~~~~~~~~~~~ii~~~~ 481 (608)
T PRK01021 411 SDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANP--KY-------DHLILEVLQQEGCLHSHIVPSQF 481 (608)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCch--hh-------HHHHHHHHhhcCCCCeEEecCcc
Confidence 56679999999976522344555565555 32 34444432211 10 011111110011 0112211000
Q ss_pred chhhccccccceeEeecCchhHHHHHHhCcceecc-ccccchhhHHHHHhHh-----C-----eeeEeecCcc--CCCcC
Q 044441 234 QAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAM-PMVYEQSRNAKVVVDI-----G-----MGMDVPRDKI--NQRLR 300 (333)
Q Consensus 234 ~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~-P~~~DQ~~na~~~~~~-----G-----~g~~l~~~~~--~~~~~ 300 (333)
..++++.+++ .+.-.| ..++|++.+|+|||++ -...=-+.-++++.+. | +|..+-+.=- .++.|
T Consensus 482 ~~~~m~aaD~--aLaaSG-TaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~t 558 (608)
T PRK01021 482 RYELMRECDC--ALAKCG-TIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQ 558 (608)
T ss_pred hHHHHHhcCe--eeecCC-HHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCC
Confidence 2467886666 777777 4678999999999997 3333344556666651 1 2222211100 24689
Q ss_pred HHHHHHHHHHHhcC-cchHHHHHHHHHHHHHhh
Q 044441 301 REEVARVIKHVLLQ-EEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 301 ~~~l~~ai~~vl~~-~~~~~~~~~a~~l~~~~~ 332 (333)
++++.+++ ++|.+ +..++.++..+++.+.+.
T Consensus 559 pe~La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg 590 (608)
T PRK01021 559 PEEVAAAL-DILKTSQSKEKQKDACRDLYQAMN 590 (608)
T ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhc
Confidence 99999997 77764 223466666666666553
No 54
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.71 E-value=6.8e-06 Score=75.51 Aligned_cols=96 Identities=20% Similarity=0.335 Sum_probs=67.2
Q ss_pred cCCCeEEeccccch---hhccccccceeEee----cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCc
Q 044441 222 NNKGMLVQGWVPQA---KILRHGRIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDK 294 (333)
Q Consensus 222 ~~~~~~~~~~~p~~---~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~ 294 (333)
...++.+.+++|+. .++..+++ +|.. +...++.||+++|+|+|+.... ..+..+++.+.|..+..
T Consensus 257 ~~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~----~~~~~i~~~~~g~~~~~-- 328 (374)
T cd03817 257 LADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDAP----GLPDLVADGENGFLFPP-- 328 (374)
T ss_pred CCCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCCC----ChhhheecCceeEEeCC--
Confidence 35689999999875 46777776 6643 3357899999999999987543 35566666678888863
Q ss_pred cCCCcCHHHHHHHHHHHhcC-cchHHHHHHHHHHHHH
Q 044441 295 INQRLRREEVARVIKHVLLQ-EEGKQIRRKAKEMSER 330 (333)
Q Consensus 295 ~~~~~~~~~l~~ai~~vl~~-~~~~~~~~~a~~l~~~ 330 (333)
. +. ++.+++.+++++ +..+.+++++++..+.
T Consensus 329 --~--~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 360 (374)
T cd03817 329 --G--DE-ALAEALLRLLQDPELRRRLSKNAEESAEK 360 (374)
T ss_pred --C--CH-HHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 1 22 899999999985 2223566666665543
No 55
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.69 E-value=7e-06 Score=75.18 Aligned_cols=131 Identities=17% Similarity=0.095 Sum_probs=80.5
Q ss_pred CeEEEEEecCccc-CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch---h
Q 044441 161 WSVVFVSFGSEYF-LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA---K 236 (333)
Q Consensus 161 ~~~v~vs~Gs~~~-~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~---~ 236 (333)
.+.+++..|+... -..+.+..++..+.+.+..+++ ++.......... .. ....++.+.+++++. .
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i-~G~~~~~~~~~~-~~---------~~~~~v~~~g~~~~~~~~~ 258 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVI-VGNGLELEEESY-EL---------EGDPRVEFLGAYPQEEIDD 258 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEE-EcCchhhhHHHH-hh---------cCCCeEEEeCCCCHHHHHH
Confidence 3467777887654 2234444444444333445443 343221110000 00 135689999999755 4
Q ss_pred hccccccceeEee----c-CchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHH
Q 044441 237 ILRHGRIGGFLSH----C-GWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 237 ll~~~~~~~~I~h----g-G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~v 311 (333)
+++.+++ +|+. . ...++.||+++|+|+|+.+.. .+...+.+.+.|..+.. -+.+++.+++.++
T Consensus 259 ~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~~~g~~~~~------~d~~~l~~~i~~l 326 (359)
T cd03823 259 FYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDGVNGLLFPP------GDAEDLAAALERL 326 (359)
T ss_pred HHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCCCcEEEECC------CCHHHHHHHHHHH
Confidence 6887776 6632 2 345899999999999987643 35566666667888852 3589999999999
Q ss_pred hcC
Q 044441 312 LLQ 314 (333)
Q Consensus 312 l~~ 314 (333)
+++
T Consensus 327 ~~~ 329 (359)
T cd03823 327 IDD 329 (359)
T ss_pred HhC
Confidence 984
No 56
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.65 E-value=2.1e-05 Score=71.88 Aligned_cols=248 Identities=18% Similarity=0.118 Sum_probs=132.9
Q ss_pred hHHHHHHHh--hcCCCEEEEcCCc---hhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCcccccc
Q 044441 5 KPAFCNILE--TLKPTLVMYDLFQ---PWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKK 79 (333)
Q Consensus 5 ~~~l~~~l~--~~~pD~vv~D~~~---~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 79 (333)
...+.++++ ..+||+|++.... ..+..+++..++|++........... .
T Consensus 80 ~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-------------~------------- 133 (377)
T cd03798 80 ARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLL-------------P------------- 133 (377)
T ss_pred HHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhccc-------------C-------------
Confidence 345667787 8899999988432 33456667788898886544321100 0
Q ss_pred cccccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhcc--CCCCeeecCcCcCCCCCCCChhHHHHhhcC
Q 044441 80 INRFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSL--MENEIVPVGPLVQESIFKEDDTKIMDWLSQ 157 (333)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~--~~~~~~~vGpl~~~~~~~~~~~~l~~~l~~ 157 (333)
... .........+.. ++.+++.|...-+ .+... ...++..+++...............+-+..
T Consensus 134 --------~~~-~~~~~~~~~~~~-~d~ii~~s~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 198 (377)
T cd03798 134 --------RKR-LLRALLRRALRR-ADAVIAVSEALAD-----ELKALGIDPEKVTVIPNGVDTERFSPADRAEARKLGL 198 (377)
T ss_pred --------chh-hHHHHHHHHHhc-CCeEEeCCHHHHH-----HHHHhcCCCCceEEcCCCcCcccCCCcchHHHHhccC
Confidence 000 011122234454 7777776633222 12221 234566665443321111111110011112
Q ss_pred CCCCeEEEEEecCccc-CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHH--hcCCCeEEeccccc
Q 044441 158 KEPWSVVFVSFGSEYF-LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIE--RNNKGMLVQGWVPQ 234 (333)
Q Consensus 158 ~~~~~~v~vs~Gs~~~-~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~p~ 234 (333)
...+.+++..|+... ...+.+..++..+...+..+.+.+.+..... +.+.+..+ ....++.+.+++++
T Consensus 199 -~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~--------~~~~~~~~~~~~~~~v~~~g~~~~ 269 (377)
T cd03798 199 -PEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLR--------EALEALAAELGLEDRVTFLGAVPH 269 (377)
T ss_pred -CCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcch--------HHHHHHHHhcCCcceEEEeCCCCH
Confidence 223367777787654 2234444444444433333433333221110 11111110 03568999999987
Q ss_pred h---hhccccccceeEe----ecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHH
Q 044441 235 A---KILRHGRIGGFLS----HCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARV 307 (333)
Q Consensus 235 ~---~ll~~~~~~~~I~----hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~a 307 (333)
. .++..+++ +|. -|..++++||+++|+|+|+-+..+ ....+.+.+.|..+. .-+.+++.++
T Consensus 270 ~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~~~~g~~~~------~~~~~~l~~~ 337 (377)
T cd03798 270 EEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIITDGENGLLVP------PGDPEALAEA 337 (377)
T ss_pred HHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhcCCcceeEEC------CCCHHHHHHH
Confidence 5 56776666 653 245678999999999999876543 445566667778774 3488999999
Q ss_pred HHHHhcC
Q 044441 308 IKHVLLQ 314 (333)
Q Consensus 308 i~~vl~~ 314 (333)
|.+++++
T Consensus 338 i~~~~~~ 344 (377)
T cd03798 338 ILRLLAD 344 (377)
T ss_pred HHHHhcC
Confidence 9999984
No 57
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.64 E-value=1.5e-05 Score=74.77 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=66.7
Q ss_pred CCCeEEeccccchh---hccccccceeEee----cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCcc
Q 044441 223 NKGMLVQGWVPQAK---ILRHGRIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKI 295 (333)
Q Consensus 223 ~~~~~~~~~~p~~~---ll~~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~ 295 (333)
..++.+.+|+|+.+ ++..+++ +++. |-..+++||+++|+|+|+....+ ....+++.+.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~~~g~~~~~--- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVDGVTGLLVDP--- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccCCCCeEEeCC---
Confidence 46899999999764 5777776 7744 22468999999999999876543 4556666678998852
Q ss_pred CCCcCHHHHHHHHHHHhcCc-chHHHHHHHHHH
Q 044441 296 NQRLRREEVARVIKHVLLQE-EGKQIRRKAKEM 327 (333)
Q Consensus 296 ~~~~~~~~l~~ai~~vl~~~-~~~~~~~~a~~l 327 (333)
-+.+++.++|.+++.+. ....+.+++++.
T Consensus 353 ---~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 382 (398)
T cd03800 353 ---RDPEALAAALRRLLTDPALRRRLSRAGLRR 382 (398)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 36899999999999842 123455555554
No 58
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.62 E-value=1.3e-05 Score=73.07 Aligned_cols=250 Identities=16% Similarity=0.076 Sum_probs=131.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHH--HHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCcccccccccc
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAA--EAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINRF 83 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 83 (333)
..+..+++..+||+|++........ ..+...++|++............. . .
T Consensus 75 ~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~---------~-----~------------- 127 (374)
T cd03801 75 LRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGN---------E-----L------------- 127 (374)
T ss_pred HHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcccc---------c-----h-------------
Confidence 4456677788999999885433333 578888999988665432211000 0 0
Q ss_pred cCCCCCCch-hhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCC---CCeeecCcCcCCCCCCCChhHHHHhhcCCC
Q 044441 84 MHPTANGTL-NKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLME---NEIVPVGPLVQESIFKEDDTKIMDWLSQKE 159 (333)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~---~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~ 159 (333)
..... ........... ++.+++.|....+. +....+ .++..+.+-+..............-... .
T Consensus 128 ----~~~~~~~~~~~~~~~~~-~d~~i~~s~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~ 196 (374)
T cd03801 128 ----GLLLKLARALERRALRR-ADRIIAVSEATREE-----LRELGGVPPEKITVIPNGVDTERFRPAPRAARRRLGI-P 196 (374)
T ss_pred ----hHHHHHHHHHHHHHHHh-CCEEEEecHHHHHH-----HHhcCCCCCCcEEEecCcccccccCccchHHHhhcCC-c
Confidence 00000 11122233444 77777776443321 223222 2555554332221100000111111111 2
Q ss_pred CCeEEEEEecCccc-CCHHHHHHHHHHHhcCCCcE-EEEEecCCCcchhhhhcCchhHHHHH--HhcCCCeEEeccccch
Q 044441 160 PWSVVFVSFGSEYF-LSKDEMHEIASGLLLSEVSF-IRVLRLHPDEKITIEEALPQGFAEEI--ERNNKGMLVQGWVPQA 235 (333)
Q Consensus 160 ~~~~v~vs~Gs~~~-~~~~~~~~~~~~l~~~~~~~-i~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~p~~ 235 (333)
.+..+++.+|+... ...+.+..++..+.+....+ ++.++... . . ..+.+.. .....++.+.++++..
T Consensus 197 ~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~-~-~-------~~~~~~~~~~~~~~~v~~~g~~~~~ 267 (374)
T cd03801 197 EDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGP-L-R-------EELEALAAELGLGDRVTFLGFVPDE 267 (374)
T ss_pred CCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcH-H-H-------HHHHHHHHHhCCCcceEEEeccChh
Confidence 23366777787653 12233333333333322223 33334211 1 0 1111100 0145688899999754
Q ss_pred ---hhccccccceeEe----ecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHH
Q 044441 236 ---KILRHGRIGGFLS----HCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVI 308 (333)
Q Consensus 236 ---~ll~~~~~~~~I~----hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai 308 (333)
.++..+++ +|. -|..++++||+++|+|+|+.+. ......+++.+.|..++ ..+.+++.++|
T Consensus 268 ~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~~~g~~~~------~~~~~~l~~~i 335 (374)
T cd03801 268 DLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDGETGLLVP------PGDPEALAEAI 335 (374)
T ss_pred hHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCCcceEEeC------CCCHHHHHHHH
Confidence 57777776 663 2456799999999999998765 34556666677888885 23589999999
Q ss_pred HHHhcC
Q 044441 309 KHVLLQ 314 (333)
Q Consensus 309 ~~vl~~ 314 (333)
.+++.+
T Consensus 336 ~~~~~~ 341 (374)
T cd03801 336 LRLLDD 341 (374)
T ss_pred HHHHcC
Confidence 999984
No 59
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.59 E-value=2e-05 Score=71.35 Aligned_cols=254 Identities=16% Similarity=0.171 Sum_probs=129.5
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCC-CeEEEechhHHHHHhhhccccCCCCCCCCcccCCCcccccccccc
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHI-AAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINRF 83 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgi-P~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 83 (333)
...+.++++..+||+|++..........+...+. |.+..........
T Consensus 72 ~~~~~~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------------------------- 119 (348)
T cd03820 72 LRRLRKLLKNNKPDVVISFLTSLLTFLASLGLKIVKLIVSEHNSPDAY-------------------------------- 119 (348)
T ss_pred hHHHHHhhcccCCCEEEEcCchHHHHHHHHhhccccEEEecCCCccch--------------------------------
Confidence 3567778888999999998544344444555555 6665432210000
Q ss_pred cCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCCChhHHHHhhcCCCCCeE
Q 044441 84 MHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKEDDTKIMDWLSQKEPWSV 163 (333)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~~~ 163 (333)
................ ++.+++.|..... ......+.++..+++-....... ........
T Consensus 120 ----~~~~~~~~~~~~~~~~-~d~ii~~s~~~~~-----~~~~~~~~~~~vi~~~~~~~~~~----------~~~~~~~~ 179 (348)
T cd03820 120 ----KKRLRRLLLRRLLYRR-ADAVVVLTEEDRA-----LYYKKFNKNVVVIPNPLPFPPEE----------PSSDLKSK 179 (348)
T ss_pred ----hhhhHHHHHHHHHHhc-CCEEEEeCHHHHH-----HhhccCCCCeEEecCCcChhhcc----------ccCCCCCc
Confidence 0000000012333444 7777777754321 11122334566665433221100 00112235
Q ss_pred EEEEecCccc-CCHHHHHHHHHHHhcCCCcE-EEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccc-hhhccc
Q 044441 164 VFVSFGSEYF-LSKDEMHEIASGLLLSEVSF-IRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQ-AKILRH 240 (333)
Q Consensus 164 v~vs~Gs~~~-~~~~~~~~~~~~l~~~~~~~-i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~-~~ll~~ 240 (333)
+++..|+... -..+.+..++..+.+...++ ++.++...... . + .....+. +...++.+.++... ..++..
T Consensus 180 ~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~-~----~-~~~~~~~-~~~~~v~~~g~~~~~~~~~~~ 252 (348)
T cd03820 180 RILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPERE-A----L-EALIKEL-GLEDRVILLGFTKNIEEYYAK 252 (348)
T ss_pred EEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHH-H----H-HHHHHHc-CCCCeEEEcCCcchHHHHHHh
Confidence 5666677654 23444555555554322222 33344322110 0 0 0011111 02456767666333 367887
Q ss_pred cccceeEeecC----chhHHHHHHhCcceeccccccchhhHHHHHhHhC-eeeEeecCccCCCcCHHHHHHHHHHHhcC-
Q 044441 241 GRIGGFLSHCG----WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIG-MGMDVPRDKINQRLRREEVARVIKHVLLQ- 314 (333)
Q Consensus 241 ~~~~~~I~hgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G-~g~~l~~~~~~~~~~~~~l~~ai~~vl~~- 314 (333)
+++ +|.... .++++||+++|+|+|+.+..+.+ ..+.+.| .|..++ ..+.+++.++|.+++++
T Consensus 253 ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~~~~g~~~~------~~~~~~~~~~i~~ll~~~ 320 (348)
T cd03820 253 ASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIEDGVNGLLVP------NGDVEALAEALLRLMEDE 320 (348)
T ss_pred CCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----HhhhccCcceEEeC------CCCHHHHHHHHHHHHcCH
Confidence 776 665542 57899999999999987654432 2344444 788885 24679999999999984
Q ss_pred cchHHHHHHHHHHHH
Q 044441 315 EEGKQIRRKAKEMSE 329 (333)
Q Consensus 315 ~~~~~~~~~a~~l~~ 329 (333)
+....+++++++..+
T Consensus 321 ~~~~~~~~~~~~~~~ 335 (348)
T cd03820 321 ELRKRMGANARESAE 335 (348)
T ss_pred HHHHHHHHHHHHHHH
Confidence 112345555544443
No 60
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.59 E-value=2.4e-05 Score=72.00 Aligned_cols=94 Identities=22% Similarity=0.411 Sum_probs=65.1
Q ss_pred CCCeEEec-cccch---hhccccccceeEe--e----cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeec
Q 044441 223 NKGMLVQG-WVPQA---KILRHGRIGGFLS--H----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPR 292 (333)
Q Consensus 223 ~~~~~~~~-~~p~~---~ll~~~~~~~~I~--h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~ 292 (333)
..++.+.+ |+|+. .+++.+++ +|. + |-.++++||+++|+|+|+.+..+ ...+.+.+.|..+..
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~g~~~~~ 318 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDGGTGLLVPP 318 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeCCCcEEEcC
Confidence 45777765 48764 57777776 653 2 33568999999999999987654 333555677888752
Q ss_pred CccCCCcCHHHHHHHHHHHhcC-cchHHHHHHHHHHHH
Q 044441 293 DKINQRLRREEVARVIKHVLLQ-EEGKQIRRKAKEMSE 329 (333)
Q Consensus 293 ~~~~~~~~~~~l~~ai~~vl~~-~~~~~~~~~a~~l~~ 329 (333)
-+.+++.+++.+++++ +...++++++++..+
T Consensus 319 ------~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 350 (366)
T cd03822 319 ------GDPAALAEAIRRLLADPELAQALRARAREYAR 350 (366)
T ss_pred ------CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHh
Confidence 3689999999999985 333456666666543
No 61
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.58 E-value=4.7e-05 Score=70.14 Aligned_cols=151 Identities=18% Similarity=0.148 Sum_probs=87.4
Q ss_pred eEEEEEecCccc-CCHHHHHHHHHHHhcCCCcE-EEEEecCCCcchhhhhcCchhHHHHHH--hcCCCeEEeccccch-h
Q 044441 162 SVVFVSFGSEYF-LSKDEMHEIASGLLLSEVSF-IRVLRLHPDEKITIEEALPQGFAEEIE--RNNKGMLVQGWVPQA-K 236 (333)
Q Consensus 162 ~~v~vs~Gs~~~-~~~~~~~~~~~~l~~~~~~~-i~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~p~~-~ 236 (333)
..+++..|+... -..+.+.+++..+...+..+ ++.++.....+. +.+.+.+..+ ...+++.+.+|.+.. .
T Consensus 185 ~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 259 (355)
T cd03819 185 KPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRF-----YYAELLELIKRLGLQDRVTFVGHCSDMPA 259 (355)
T ss_pred ceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccch-----HHHHHHHHHHHcCCcceEEEcCCcccHHH
Confidence 366777777654 23455555666665533233 334443221100 1011111111 024578888885543 6
Q ss_pred hccccccceeEeec----C-chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHH
Q 044441 237 ILRHGRIGGFLSHC----G-WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 237 ll~~~~~~~~I~hg----G-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~v 311 (333)
++..+++ +|+-. | .++++||+++|+|+|+.-.. .....+.+.+.|..+. .-+.+++.++|..+
T Consensus 260 ~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~~~~g~~~~------~~~~~~l~~~i~~~ 327 (355)
T cd03819 260 AYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETVRPGETGLLVP------PGDAEALAQALDQI 327 (355)
T ss_pred HHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHHhCCCceEEeC------CCCHHHHHHHHHHH
Confidence 7887777 55422 2 46999999999999987543 3455555656788884 24889999999766
Q ss_pred hc-C-cchHHHHHHHHHHHH
Q 044441 312 LL-Q-EEGKQIRRKAKEMSE 329 (333)
Q Consensus 312 l~-~-~~~~~~~~~a~~l~~ 329 (333)
+. + ++..+++++|++..+
T Consensus 328 ~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 328 LSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred HhhCHHHHHHHHHHHHHHHH
Confidence 64 2 223456667666654
No 62
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.57 E-value=2.3e-05 Score=71.03 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=55.4
Q ss_pred CCCeEEeccccch-hhccccccceeEee----cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCC
Q 044441 223 NKGMLVQGWVPQA-KILRHGRIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQ 297 (333)
Q Consensus 223 ~~~~~~~~~~p~~-~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~ 297 (333)
..++.+.++.+.. +++..+++ +|.- |..++++||+++|+|+|+.... .....+++.+.|..++.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~~~g~~~~~----- 313 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDGENGLLVPV----- 313 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCCCceEEECC-----
Confidence 4578888887764 67887776 6633 3357899999999999986443 55667777788998853
Q ss_pred CcCHHHH---HHHHHHHhc
Q 044441 298 RLRREEV---ARVIKHVLL 313 (333)
Q Consensus 298 ~~~~~~l---~~ai~~vl~ 313 (333)
-+.+.+ .+++..++.
T Consensus 314 -~~~~~~~~~~~~i~~~~~ 331 (353)
T cd03811 314 -GDEAALAAAALALLDLLL 331 (353)
T ss_pred -CCHHHHHHHHHHHHhccC
Confidence 366666 445555554
No 63
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.56 E-value=3.3e-07 Score=71.95 Aligned_cols=119 Identities=22% Similarity=0.222 Sum_probs=80.8
Q ss_pred eEEEEEecCcccC---CHHHHHHHHHHHhcCCC-cEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeE--Eeccccc-
Q 044441 162 SVVFVSFGSEYFL---SKDEMHEIASGLLLSEV-SFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGML--VQGWVPQ- 234 (333)
Q Consensus 162 ~~v~vs~Gs~~~~---~~~~~~~~~~~l~~~~~-~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~p~- 234 (333)
..+||+-||.... +.-.-++.++.|.+.|. +.+..++....- .++....-. ...++. .-+|-|.
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-------~~d~~~~~~--k~~gl~id~y~f~psl 74 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-------FGDPIDLIR--KNGGLTIDGYDFSPSL 74 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-------CCCHHHhhc--ccCCeEEEEEecCccH
Confidence 3899999997531 11222456677777775 566777765211 111111100 122333 3457787
Q ss_pred hhhccccccceeEeecCchhHHHHHHhCcceecccc----ccchhhHHHHHhHhCeeeEee
Q 044441 235 AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPM----VYEQSRNAKVVVDIGMGMDVP 291 (333)
Q Consensus 235 ~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~----~~DQ~~na~~~~~~G~g~~l~ 291 (333)
.+.++.+++ +|+|+|+||++|.|..|+|.|+++- ..+|-.-|..+++.|.=....
T Consensus 75 ~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ 133 (170)
T KOG3349|consen 75 TEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCT 133 (170)
T ss_pred HHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEee
Confidence 467776666 9999999999999999999999985 469999999999999777664
No 64
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.55 E-value=3.6e-05 Score=70.92 Aligned_cols=146 Identities=21% Similarity=0.191 Sum_probs=85.9
Q ss_pred CeEEEEEecCccc-CCHHHHHHHHHHHhcC-CCcEEEEEecCCCcchhhhhcCchhHHHHH-HhcCCCeEEeccccch--
Q 044441 161 WSVVFVSFGSEYF-LSKDEMHEIASGLLLS-EVSFIRVLRLHPDEKITIEEALPQGFAEEI-ERNNKGMLVQGWVPQA-- 235 (333)
Q Consensus 161 ~~~v~vs~Gs~~~-~~~~~~~~~~~~l~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~p~~-- 235 (333)
++.+++..|+... ...+.+..++..+... +..+ +.++..... +.+.+.. .....++.+.+++++.
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l-~i~G~~~~~---------~~~~~~~~~~~~~~v~~~g~~~~~~~ 288 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRF-LIVGDGPEK---------EELKELAKALGLDNVTFLGRVPKEEL 288 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEE-EEeCCcccH---------HHHHHHHHHcCCCcEEEeCCCChHHH
Confidence 3477777888654 2334444444444433 3444 334432211 1111100 0145688888999865
Q ss_pred -hhccccccceeEeecC---------chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHH
Q 044441 236 -KILRHGRIGGFLSHCG---------WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVA 305 (333)
Q Consensus 236 -~ll~~~~~~~~I~hgG---------~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~ 305 (333)
.++..+++ +|.... .+++.||+++|+|+|+.+..+.+.. +.+.+.|..+.. -+.+++.
T Consensus 289 ~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~----~~~~~~g~~~~~------~~~~~l~ 356 (394)
T cd03794 289 PELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL----VEEAGAGLVVPP------GDPEALA 356 (394)
T ss_pred HHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh----hccCCcceEeCC------CCHHHHH
Confidence 46776766 664332 2347999999999999987654433 333377887752 3789999
Q ss_pred HHHHHHhcC-cchHHHHHHHHHHH
Q 044441 306 RVIKHVLLQ-EEGKQIRRKAKEMS 328 (333)
Q Consensus 306 ~ai~~vl~~-~~~~~~~~~a~~l~ 328 (333)
++|.+++.+ +.-+.+++++++..
T Consensus 357 ~~i~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T cd03794 357 AAILELLDDPEERAEMGENGRRYV 380 (394)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHH
Confidence 999999974 22234555555443
No 65
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.54 E-value=3.7e-05 Score=69.96 Aligned_cols=148 Identities=19% Similarity=0.154 Sum_probs=86.6
Q ss_pred CeEEEEEecCccc-CCHHHHHHHHHHHhcC--CCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch-h
Q 044441 161 WSVVFVSFGSEYF-LSKDEMHEIASGLLLS--EVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA-K 236 (333)
Q Consensus 161 ~~~v~vs~Gs~~~-~~~~~~~~~~~~l~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~-~ 236 (333)
++.+++..|+... ...+.+.+++..+.+. +..+ +.++........... ...+. ....++.+.++..+. .
T Consensus 187 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l-~i~G~~~~~~~~~~~-----~~~~~-~~~~~v~~~g~~~~~~~ 259 (359)
T cd03808 187 DDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRL-LLVGDGDEENPAAIL-----EIEKL-GLEGRVEFLGFRDDVPE 259 (359)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEE-EEEcCCCcchhhHHH-----HHHhc-CCcceEEEeeccccHHH
Confidence 3477788887654 2344555555555432 3343 344433221110000 00111 034577777775543 6
Q ss_pred hccccccceeEeecC----chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHh
Q 044441 237 ILRHGRIGGFLSHCG----WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVL 312 (333)
Q Consensus 237 ll~~~~~~~~I~hgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl 312 (333)
++..+++ +|.... .++++||+++|+|+|+.+..+ +...+.+.+.|..+. .-+.+++.++|.+++
T Consensus 260 ~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~~~g~~~~------~~~~~~~~~~i~~l~ 327 (359)
T cd03808 260 LLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDGVNGFLVP------PGDAEALADAIERLI 327 (359)
T ss_pred HHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcCcceEEEC------CCCHHHHHHHHHHHH
Confidence 7887777 765443 579999999999999975543 445566667888884 237899999999988
Q ss_pred cCc-chHHHHHHHHHH
Q 044441 313 LQE-EGKQIRRKAKEM 327 (333)
Q Consensus 313 ~~~-~~~~~~~~a~~l 327 (333)
.++ ....+.+++++.
T Consensus 328 ~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 328 EDPELRARMGQAARKR 343 (359)
T ss_pred hCHHHHHHHHHHHHHH
Confidence 742 123444555544
No 66
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.52 E-value=4.2e-05 Score=70.30 Aligned_cols=93 Identities=20% Similarity=0.258 Sum_probs=64.1
Q ss_pred CCCeEEeccccch---hhccccccceeEe----------ecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeE
Q 044441 223 NKGMLVQGWVPQA---KILRHGRIGGFLS----------HCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMD 289 (333)
Q Consensus 223 ~~~~~~~~~~p~~---~ll~~~~~~~~I~----------hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~ 289 (333)
..++.+.+++|+. .++..+++ +|. -|..++++||+++|+|+|+.+..+ ....+.+...|..
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~~~g~~ 308 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDGETGLL 308 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCCCceEE
Confidence 4689999999754 46676776 655 233579999999999999876532 2234444458888
Q ss_pred eecCccCCCcCHHHHHHHHHHHhcCc-chHHHHHHHHHH
Q 044441 290 VPRDKINQRLRREEVARVIKHVLLQE-EGKQIRRKAKEM 327 (333)
Q Consensus 290 l~~~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~~~a~~l 327 (333)
+. .-+.+++.++|.+++++. .-.++++++++.
T Consensus 309 ~~------~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~ 341 (355)
T cd03799 309 VP------PGDPEALADAIERLLDDPELRREMGEAGRAR 341 (355)
T ss_pred eC------CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 85 238899999999999842 123445555543
No 67
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.50 E-value=2.9e-05 Score=71.43 Aligned_cols=144 Identities=18% Similarity=0.143 Sum_probs=86.0
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCC-CcEEEEEecCCCcchhhhhcCchhHHHHHH--hcCCCeEEeccccch---h
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSE-VSFIRVLRLHPDEKITIEEALPQGFAEEIE--RNNKGMLVQGWVPQA---K 236 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~p~~---~ 236 (333)
.+++..|+... .+....+++++.... ..+++. +..... ..+.+..+ ....|+.+.+|+|+. .
T Consensus 192 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~-G~g~~~---------~~~~~~~~~~~~~~~V~~~g~v~~~~~~~ 259 (357)
T cd03795 192 PFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIV-GEGPLE---------AELEALAAALGLLDRVRFLGRLDDEEKAA 259 (357)
T ss_pred cEEEEeccccc--ccCHHHHHHHHHhccCcEEEEE-eCChhH---------HHHHHHHHhcCCcceEEEcCCCCHHHHHH
Confidence 56677787653 234555666665555 443333 322110 11111110 145789999999975 4
Q ss_pred hccccccceeEee---cC-chhHHHHHHhCcceeccccccchhhHHHHHhH-hCeeeEeecCccCCCcCHHHHHHHHHHH
Q 044441 237 ILRHGRIGGFLSH---CG-WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVD-IGMGMDVPRDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 237 ll~~~~~~~~I~h---gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~-~G~g~~l~~~~~~~~~~~~~l~~ai~~v 311 (333)
+++.+++-++.++ .| ..+++||+++|+|+|+....+... .+.+ .+.|..++ .-+.+++.++|.++
T Consensus 260 ~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i~~~~~~g~~~~------~~d~~~~~~~i~~l 329 (357)
T cd03795 260 LLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YVNLHGVTGLVVP------PGDPAALAEAIRRL 329 (357)
T ss_pred HHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh----HHhhCCCceEEeC------CCCHHHHHHHHHHH
Confidence 6766676333232 23 357999999999999976554443 3333 56787774 24799999999999
Q ss_pred hcC-cchHHHHHHHHHHH
Q 044441 312 LLQ-EEGKQIRRKAKEMS 328 (333)
Q Consensus 312 l~~-~~~~~~~~~a~~l~ 328 (333)
+++ +...++++++++..
T Consensus 330 ~~~~~~~~~~~~~~~~~~ 347 (357)
T cd03795 330 LEDPELRERLGEAARERA 347 (357)
T ss_pred HHCHHHHHHHHHHHHHHH
Confidence 984 22235556665544
No 68
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.49 E-value=6.1e-05 Score=69.93 Aligned_cols=93 Identities=24% Similarity=0.203 Sum_probs=65.2
Q ss_pred CCCeEEeccccch-hhccccccceeEee----cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCC
Q 044441 223 NKGMLVQGWVPQA-KILRHGRIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQ 297 (333)
Q Consensus 223 ~~~~~~~~~~p~~-~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~ 297 (333)
..++.+.++.++. .++..+++ +|.- |...++.||+++|+|+|+.... ..+..+++...|..++
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~~~~G~~~~------ 319 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKHGETGFLVD------ 319 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcCCCceEEcC------
Confidence 4568888887764 67887776 6633 3356999999999999996543 3555666656787774
Q ss_pred CcCHHHHHHHHHHHhcC-cchHHHHHHHHHH
Q 044441 298 RLRREEVARVIKHVLLQ-EEGKQIRRKAKEM 327 (333)
Q Consensus 298 ~~~~~~l~~ai~~vl~~-~~~~~~~~~a~~l 327 (333)
.-+.+++.++|.+++.+ +...++++++++.
T Consensus 320 ~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 320 VGDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 23789999999999974 2224556666655
No 69
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.37 E-value=6.4e-05 Score=70.00 Aligned_cols=146 Identities=16% Similarity=0.195 Sum_probs=85.7
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCCCcE-EEEEecCCCcchhhhhcCchhHHHHHH--hcCCCeEEeccccc--h--
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSEVSF-IRVLRLHPDEKITIEEALPQGFAEEIE--RNNKGMLVQGWVPQ--A-- 235 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~-i~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~p~--~-- 235 (333)
.+++..|.......+.+..+++++.....++ ++.+|..... +.+.+..+ +...++.+.+|+++ .
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~---------~~l~~~~~~~~l~~~v~f~G~~~~~~~~~ 251 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSDF---------EKCKAYSRELGIEQRIIWHGWQSQPWEVV 251 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCccH---------HHHHHHHHHcCCCCeEEEecccCCcHHHH
Confidence 5567777754322344556666665543233 3444433211 11111111 13568989888754 2
Q ss_pred -hhccccccceeEee----cCchhHHHHHHhCcceeccc-cccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHH
Q 044441 236 -KILRHGRIGGFLSH----CGWGSAVEGMVFGVPIIAMP-MVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIK 309 (333)
Q Consensus 236 -~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P-~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~ 309 (333)
+.+..+++ +|.. |-..++.||+++|+|+|+.- ..+ ....+++...|..+. .-+.+++.++|.
T Consensus 252 ~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~~~G~lv~------~~d~~~la~~i~ 319 (359)
T PRK09922 252 QQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPGLNGELYT------PGNIDEFVGKLN 319 (359)
T ss_pred HHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCCCceEEEC------CCCHHHHHHHHH
Confidence 23333454 6643 33579999999999999875 332 223455555788874 248999999999
Q ss_pred HHhcCcc---hHHHHHHHHHHHH
Q 044441 310 HVLLQEE---GKQIRRKAKEMSE 329 (333)
Q Consensus 310 ~vl~~~~---~~~~~~~a~~l~~ 329 (333)
+++++.+ ....+++++++.+
T Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~~ 342 (359)
T PRK09922 320 KVISGEVKYQHDAIPNSIERFYE 342 (359)
T ss_pred HHHhCcccCCHHHHHHHHHHhhH
Confidence 9998632 3456666666654
No 70
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.36 E-value=0.00016 Score=72.52 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=66.5
Q ss_pred CCCeEEeccccch-hhccccccceeEe---ecC-chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCC
Q 044441 223 NKGMLVQGWVPQA-KILRHGRIGGFLS---HCG-WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQ 297 (333)
Q Consensus 223 ~~~~~~~~~~p~~-~ll~~~~~~~~I~---hgG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~ 297 (333)
.+++.+.+|.++. .++..+++ ||. +.| .++++||+++|+|+|+....+ ....+++-..|+.+. .+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV~dg~~GlLv~----~~ 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAVQEGVTGLTLP----AD 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHccCCCCEEEeC----CC
Confidence 4678888888765 67887777 654 344 479999999999999976532 444555556798886 34
Q ss_pred CcCHHHHHHHHHHHhcC-cchHHHHHHHHHHH
Q 044441 298 RLRREEVARVIKHVLLQ-EEGKQIRRKAKEMS 328 (333)
Q Consensus 298 ~~~~~~l~~ai~~vl~~-~~~~~~~~~a~~l~ 328 (333)
+.+.+++.+++.+++.+ ..++.+++++++..
T Consensus 643 d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 643 TVTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred CCChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 45666777777776652 22567777776654
No 71
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.35 E-value=0.00025 Score=67.04 Aligned_cols=94 Identities=16% Similarity=0.088 Sum_probs=66.3
Q ss_pred CCCeEEeccccch---hhccccccceeEee----cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCcc
Q 044441 223 NKGMLVQGWVPQA---KILRHGRIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKI 295 (333)
Q Consensus 223 ~~~~~~~~~~p~~---~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~ 295 (333)
.+++.+.++++.. ++++.+++ +|.. |...+++||+++|+|+|+....+ ....+.+.+.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~--- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVADGETGLLVDG--- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhccCCceEECCC---
Confidence 4579998998764 57887777 6632 33468999999999999975543 3445566677888852
Q ss_pred CCCcCHHHHHHHHHHHhcC-cchHHHHHHHHHHH
Q 044441 296 NQRLRREEVARVIKHVLLQ-EEGKQIRRKAKEMS 328 (333)
Q Consensus 296 ~~~~~~~~l~~ai~~vl~~-~~~~~~~~~a~~l~ 328 (333)
-+.+++.++|.+++++ +..+++++++++..
T Consensus 353 ---~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~ 383 (405)
T TIGR03449 353 ---HDPADWADALARLLDDPRTRIRMGAAAVEHA 383 (405)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 4789999999999984 22245556655543
No 72
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.33 E-value=0.00019 Score=65.86 Aligned_cols=92 Identities=14% Similarity=0.171 Sum_probs=64.3
Q ss_pred cCCCeEEeccccch---hhccccccceeEeec----CchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCc
Q 044441 222 NNKGMLVQGWVPQA---KILRHGRIGGFLSHC----GWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDK 294 (333)
Q Consensus 222 ~~~~~~~~~~~p~~---~ll~~~~~~~~I~hg----G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~ 294 (333)
..+++.+.+|+++. .++..+++ +|... -.+++.||+++|+|+|+.+..+ ....+.+ +.|....
T Consensus 260 ~~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~~-~~~~~~~--- 329 (375)
T cd03821 260 LEDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIEY-GCGWVVD--- 329 (375)
T ss_pred ccceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhhc-CceEEeC---
Confidence 35688999999954 46777776 65432 2578999999999999976433 4444555 7888775
Q ss_pred cCCCcCHHHHHHHHHHHhcC-cchHHHHHHHHHH
Q 044441 295 INQRLRREEVARVIKHVLLQ-EEGKQIRRKAKEM 327 (333)
Q Consensus 295 ~~~~~~~~~l~~ai~~vl~~-~~~~~~~~~a~~l 327 (333)
.+.+++.++|.+++++ +..+.+.+++++.
T Consensus 330 ----~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 330 ----DDVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred ----CChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 2449999999999984 2234555666555
No 73
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.33 E-value=9.3e-06 Score=75.19 Aligned_cols=245 Identities=18% Similarity=0.175 Sum_probs=123.7
Q ss_pred chHHHHHHHhhcCCCEEEE--cCC-chhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccc
Q 044441 4 AKPAFCNILETLKPTLVMY--DLF-QPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKI 80 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv~--D~~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 80 (333)
+...+.+++.+.+||+||+ |.+ +.+++.+|..++||++=+. ++...... ..++|
T Consensus 55 ~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~Hie-aGlRs~d~--------~~g~~-------------- 111 (346)
T PF02350_consen 55 AIIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIPVAHIE-AGLRSGDR--------TEGMP-------------- 111 (346)
T ss_dssp HHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES------S-T--------TSSTT--------------
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCCEEEec-CCCCcccc--------CCCCc--------------
Confidence 4567788889999998884 543 6678899999999955443 33111000 00000
Q ss_pred ccccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhh-ccC-CCCeeecCcCcCCC---CCCCChhHH--HH
Q 044441 81 NRFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFP-SLM-ENEIVPVGPLVQES---IFKEDDTKI--MD 153 (333)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~-~~~-~~~~~~vGpl~~~~---~~~~~~~~l--~~ 153 (333)
-...+.....-+++.++.+-. +...+. ... +.++..||...-+. ......+.. ..
T Consensus 112 -------------de~~R~~i~~la~lhf~~t~~-----~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~ 173 (346)
T PF02350_consen 112 -------------DEINRHAIDKLAHLHFAPTEE-----ARERLLQEGEPPERIFVVGNPGIDALLQNKEEIEEKYKNSG 173 (346)
T ss_dssp -------------HHHHHHHHHHH-SEEEESSHH-----HHHHHHHTT--GGGEEE---HHHHHHHHHHHTTCC-HHHHH
T ss_pred -------------hhhhhhhhhhhhhhhccCCHH-----HHHHHHhcCCCCCeEEEEChHHHHHHHHhHHHHhhhhhhHH
Confidence 111222222225677776622 222121 112 35788888552210 000011111 12
Q ss_pred hhcCCCCCeEEEEEecCcccCC-H---HHHHHHHHHHhcC-CCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEE
Q 044441 154 WLSQKEPWSVVFVSFGSEYFLS-K---DEMHEIASGLLLS-EVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLV 228 (333)
Q Consensus 154 ~l~~~~~~~~v~vs~Gs~~~~~-~---~~~~~~~~~l~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 228 (333)
.+.. ..++.++|++=...... . ..+..++++|.+. +.++||......... ..+.+++++. +|+.+
T Consensus 174 i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~--------~~i~~~l~~~-~~v~~ 243 (346)
T PF02350_consen 174 ILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGS--------DIIIEKLKKY-DNVRL 243 (346)
T ss_dssp HHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHH--------HHHHHHHTT--TTEEE
T ss_pred HHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHH--------HHHHHHhccc-CCEEE
Confidence 2222 45679999985555444 3 4555566666555 677888876322110 1222333223 48887
Q ss_pred eccccc---hhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHH
Q 044441 229 QGWVPQ---AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVA 305 (333)
Q Consensus 229 ~~~~p~---~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~ 305 (333)
..-++. ..+|.++++ +|+..| |-.-||.+.|+|.|.+=..++.+ .....|..+.+. .+.++|.
T Consensus 244 ~~~l~~~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~iR~~geRq----e~r~~~~nvlv~-------~~~~~I~ 309 (346)
T PF02350_consen 244 IEPLGYEEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNIRDSGERQ----EGRERGSNVLVG-------TDPEAII 309 (346)
T ss_dssp E----HHHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEECSSS-S-H----HHHHTTSEEEET-------SSHHHHH
T ss_pred ECCCCHHHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEecCCCCCH----HHHhhcceEEeC-------CCHHHHH
Confidence 766655 468888888 999998 54449999999999992222211 122335566653 5899999
Q ss_pred HHHHHHhc
Q 044441 306 RVIKHVLL 313 (333)
Q Consensus 306 ~ai~~vl~ 313 (333)
+++++++.
T Consensus 310 ~ai~~~l~ 317 (346)
T PF02350_consen 310 QAIEKALS 317 (346)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999997
No 74
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.32 E-value=0.00086 Score=63.59 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=65.2
Q ss_pred CCCeEEeccccch---hhccccccceeEeecCc------hhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecC
Q 044441 223 NKGMLVQGWVPQA---KILRHGRIGGFLSHCGW------GSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRD 293 (333)
Q Consensus 223 ~~~~~~~~~~p~~---~ll~~~~~~~~I~hgG~------~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~ 293 (333)
..|+.+.+|+|+. .+++.+++.++.+..+. +.+.|++++|+|+|+....+.. ....++ +.|+.++.
T Consensus 283 l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~--~~G~~~~~- 357 (412)
T PRK10307 283 LPNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE--GIGVCVEP- 357 (412)
T ss_pred CCceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh--CCcEEeCC-
Confidence 3479899999865 57888887555555332 2368999999999998654321 112223 67888852
Q ss_pred ccCCCcCHHHHHHHHHHHhcC-cchHHHHHHHHHHH
Q 044441 294 KINQRLRREEVARVIKHVLLQ-EEGKQIRRKAKEMS 328 (333)
Q Consensus 294 ~~~~~~~~~~l~~ai~~vl~~-~~~~~~~~~a~~l~ 328 (333)
-+.++++++|.+++++ +..+.+++++++..
T Consensus 358 -----~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~ 388 (412)
T PRK10307 358 -----ESVEALVAAIAALARQALLRPKLGTVAREYA 388 (412)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 4789999999999974 22346667766644
No 75
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.32 E-value=8.9e-05 Score=67.95 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=81.0
Q ss_pred hHHHHhhcCCCCCeEEEEEecCccc----CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCC
Q 044441 149 TKIMDWLSQKEPWSVVFVSFGSEYF----LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNK 224 (333)
Q Consensus 149 ~~l~~~l~~~~~~~~v~vs~Gs~~~----~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 224 (333)
++...-++.. +.+.|++-+-+... .....+..+++.|++.+..++....... . ....++.
T Consensus 168 ~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~-~---------~~~~~~~----- 231 (335)
T PF04007_consen 168 PEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED-Q---------RELFEKY----- 231 (335)
T ss_pred hhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc-h---------hhHHhcc-----
Confidence 3444455532 34677777766432 3446677899999888876444433211 0 1111111
Q ss_pred CeEE-eccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHH
Q 044441 225 GMLV-QGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREE 303 (333)
Q Consensus 225 ~~~~-~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~ 303 (333)
++.+ ..-+.-.++|.++++ +|+-|| ....||...|+|.|.+ +.++-...-+.+.+.|.-.. ..+.++
T Consensus 232 ~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~Gll~~--------~~~~~e 299 (335)
T PF04007_consen 232 GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEKGLLYH--------STDPDE 299 (335)
T ss_pred CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHCCCeEe--------cCCHHH
Confidence 2222 123333478998888 888777 7889999999999985 22332233455777776222 247777
Q ss_pred HHHHHHHHhc
Q 044441 304 VARVIKHVLL 313 (333)
Q Consensus 304 l~~ai~~vl~ 313 (333)
+.+.+++.+.
T Consensus 300 i~~~v~~~~~ 309 (335)
T PF04007_consen 300 IVEYVRKNLG 309 (335)
T ss_pred HHHHHHHhhh
Confidence 7777766554
No 76
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.32 E-value=6.1e-05 Score=70.22 Aligned_cols=99 Identities=20% Similarity=0.274 Sum_probs=68.9
Q ss_pred CCCeEEeccccch-hhccccccceeEee--cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCc
Q 044441 223 NKGMLVQGWVPQA-KILRHGRIGGFLSH--CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRL 299 (333)
Q Consensus 223 ~~~~~~~~~~p~~-~ll~~~~~~~~I~h--gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~ 299 (333)
..++.+.++.++. .+++.+++-++.++ |...+++||+++|+|+|+..... .+...+++...|..++ .-
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~~~G~lv~------~~ 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDGENGYLVP------KG 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccCCCceEeC------CC
Confidence 4567777777665 68888887444444 33568999999999999864331 1344555567888885 24
Q ss_pred CHHHHHHHHHHHhcCc-chHHHHHHHHHHHHH
Q 044441 300 RREEVARVIKHVLLQE-EGKQIRRKAKEMSER 330 (333)
Q Consensus 300 ~~~~l~~ai~~vl~~~-~~~~~~~~a~~l~~~ 330 (333)
+.+++.++|.+++.+. .-..+.+++++.++.
T Consensus 331 d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 362 (372)
T cd04949 331 DIEALAEAIIELLNDPKLLQKFSEAAYENAER 362 (372)
T ss_pred cHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 7899999999999852 234566777666544
No 77
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.31 E-value=0.00016 Score=68.30 Aligned_cols=96 Identities=19% Similarity=0.227 Sum_probs=65.5
Q ss_pred CCCeEEeccccch---hhccccccceeEee-cC-chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCC
Q 044441 223 NKGMLVQGWVPQA---KILRHGRIGGFLSH-CG-WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQ 297 (333)
Q Consensus 223 ~~~~~~~~~~p~~---~ll~~~~~~~~I~h-gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~ 297 (333)
..++.+.+++|+. .+++.+++-++.+. .| ..+++|||++|+|+|+... ......+.+...|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~~~G~lv~~----- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDGENGLLVDF----- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccCCceEEcCC-----
Confidence 4678999999876 46677777222232 22 2489999999999998643 344555555567888752
Q ss_pred CcCHHHHHHHHHHHhcCc-chHHHHHHHHHHH
Q 044441 298 RLRREEVARVIKHVLLQE-EGKQIRRKAKEMS 328 (333)
Q Consensus 298 ~~~~~~l~~ai~~vl~~~-~~~~~~~~a~~l~ 328 (333)
-+++++.++|.+++++. ...++.+++++..
T Consensus 351 -~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~ 381 (396)
T cd03818 351 -FDPDALAAAVIELLDDPARRARLRRAARRTA 381 (396)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 47999999999999852 2345556665544
No 78
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.29 E-value=0.00053 Score=65.23 Aligned_cols=91 Identities=22% Similarity=0.309 Sum_probs=64.1
Q ss_pred CCeEEe-ccccch---hhccccccceeEe-e---cC---chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeec
Q 044441 224 KGMLVQ-GWVPQA---KILRHGRIGGFLS-H---CG---WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPR 292 (333)
Q Consensus 224 ~~~~~~-~~~p~~---~ll~~~~~~~~I~-h---gG---~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~ 292 (333)
.++++. +|+|.. .+++.+++ +|+ + -| .++++||+++|+|+|+.... .....+++.+.|+.+.
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~----~~~eiv~~~~~G~lv~- 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK----CIDELVKHGENGLVFG- 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCCC----CHHHHhcCCCCEEEEC-
Confidence 456544 588755 56777777 663 1 12 35799999999999996432 4556677777898883
Q ss_pred CccCCCcCHHHHHHHHHHHhcC----cchHHHHHHHHHHH
Q 044441 293 DKINQRLRREEVARVIKHVLLQ----EEGKQIRRKAKEMS 328 (333)
Q Consensus 293 ~~~~~~~~~~~l~~ai~~vl~~----~~~~~~~~~a~~l~ 328 (333)
+.++++++|.+++++ +..+.+.+++++..
T Consensus 367 -------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 -------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred -------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 789999999999985 22356677776655
No 79
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.29 E-value=0.00018 Score=67.20 Aligned_cols=243 Identities=17% Similarity=0.135 Sum_probs=128.1
Q ss_pred chHHHHHHHhhcCCCEEEEc--C-CchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccc
Q 044441 4 AKPAFCNILETLKPTLVMYD--L-FQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKI 80 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv~D--~-~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 80 (333)
+...+.+++++.+||+|++= . -+.++..+|..+|||++-+...-... +.+
T Consensus 81 ~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs~-------------~~~-------------- 133 (365)
T TIGR03568 81 TIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVTE-------------GAI-------------- 133 (365)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccCC-------------CCc--------------
Confidence 34678888999999998854 3 35678899999999999654332100 000
Q ss_pred ccccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhh-hhccC-CCCeeecCcCcCC---CCCCCChhHHHHhh
Q 044441 81 NRFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDY-FPSLM-ENEIVPVGPLVQE---SIFKEDDTKIMDWL 155 (333)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~-~~~~~-~~~~~~vGpl~~~---~~~~~~~~~l~~~l 155 (333)
+ ...+.....-+++.++.+-. .-+. .+... +.++..+|...-+ ........++.+.+
T Consensus 134 -------e------E~~r~~i~~la~l~f~~t~~-----~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~l 195 (365)
T TIGR03568 134 -------D------ESIRHAITKLSHLHFVATEE-----YRQRVIQMGEDPDRVFNVGSPGLDNILSLDLLSKEELEEKL 195 (365)
T ss_pred -------h------HHHHHHHHHHHhhccCCCHH-----HHHHHHHcCCCCCcEEEECCcHHHHHHhhhccCHHHHHHHh
Confidence 0 00000001101223332211 1111 11111 2355666643211 00001123444444
Q ss_pred cCCCCCeEEEEEecCcc--c-CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccc
Q 044441 156 SQKEPWSVVFVSFGSEY--F-LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWV 232 (333)
Q Consensus 156 ~~~~~~~~v~vs~Gs~~--~-~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 232 (333)
+-.++++.++|++=... . ...+.+..+++++.+.+.++++........... +-+.+ .+.....+++.+.+-+
T Consensus 196 gl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~----i~~~i-~~~~~~~~~v~l~~~l 270 (365)
T TIGR03568 196 GIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRI----INEAI-EEYVNEHPNFRLFKSL 270 (365)
T ss_pred CCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchH----HHHHH-HHHhcCCCCEEEECCC
Confidence 33223458778775543 2 346789999999988775655554332111000 00111 1110014578777655
Q ss_pred cc---hhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeE-eecCccCCCcCHHHHHHHH
Q 044441 233 PQ---AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMD-VPRDKINQRLRREEVARVI 308 (333)
Q Consensus 233 p~---~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~-l~~~~~~~~~~~~~l~~ai 308 (333)
+. ..++.++++ +||-++.+. .||.+.|+|.|.+- +.+ ...+.|..+. +. .++++|.+++
T Consensus 271 ~~~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~~g~nvl~vg-------~~~~~I~~a~ 333 (365)
T TIGR03568 271 GQERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRLRADSVIDVD-------PDKEEIVKAI 333 (365)
T ss_pred ChHHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc----hhhhhcCeEEEeC-------CCHHHHHHHH
Confidence 44 467887777 998886555 99999999999873 211 1113343333 43 4789999999
Q ss_pred HHHhc
Q 044441 309 KHVLL 313 (333)
Q Consensus 309 ~~vl~ 313 (333)
++++.
T Consensus 334 ~~~~~ 338 (365)
T TIGR03568 334 EKLLD 338 (365)
T ss_pred HHHhC
Confidence 99664
No 80
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.28 E-value=0.00036 Score=63.66 Aligned_cols=78 Identities=24% Similarity=0.332 Sum_probs=54.4
Q ss_pred CCCeEEeccccch-hhccccccceeEeecC----chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCC
Q 044441 223 NKGMLVQGWVPQA-KILRHGRIGGFLSHCG----WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQ 297 (333)
Q Consensus 223 ~~~~~~~~~~p~~-~ll~~~~~~~~I~hgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~ 297 (333)
..++.+.+..... .+++.+++ +|.... .+++.||+++|+|+|+.... .+...+.+ .|..+.
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~----~~~e~~~~--~g~~~~------ 315 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDVG----DNAELVGD--TGFLVP------ 315 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCCC----ChHHHhhc--CCEEeC------
Confidence 3466665554443 67887776 776544 47999999999999986543 34455555 566664
Q ss_pred CcCHHHHHHHHHHHhcC
Q 044441 298 RLRREEVARVIKHVLLQ 314 (333)
Q Consensus 298 ~~~~~~l~~ai~~vl~~ 314 (333)
.-+.+++.++|.+++++
T Consensus 316 ~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 316 PGDPEALAEAIEALLAD 332 (365)
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 13689999999999984
No 81
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.26 E-value=3.4e-05 Score=67.29 Aligned_cols=141 Identities=14% Similarity=0.196 Sum_probs=100.0
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch-hhcccc
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA-KILRHG 241 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~-~ll~~~ 241 (333)
-|+|++|..- +......++..|....+.+-.+++.... -.++...+.. ..+|+........+ .++..+
T Consensus 160 ~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~p--------~l~~l~k~~~-~~~~i~~~~~~~dma~LMke~ 228 (318)
T COG3980 160 DILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSNP--------TLKNLRKRAE-KYPNINLYIDTNDMAELMKEA 228 (318)
T ss_pred eEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCCc--------chhHHHHHHh-hCCCeeeEecchhHHHHHHhc
Confidence 7999999652 3446677888887777666566663211 1122222221 34566654445544 688866
Q ss_pred ccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHHH
Q 044441 242 RIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIR 321 (333)
Q Consensus 242 ~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~ 321 (333)
++ .|+.||. |++|++..|+|.+++|+...|..-|...+.+|+-..+. -.++.+.+...+.++.+ +...|
T Consensus 229 d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l~-----~~l~~~~~~~~~~~i~~---d~~~r 297 (318)
T COG3980 229 DL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLG-----YHLKDLAKDYEILQIQK---DYARR 297 (318)
T ss_pred ch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhcc-----CCCchHHHHHHHHHhhh---CHHHh
Confidence 66 9998875 89999999999999999999999999999999988885 23788888888888888 55555
Q ss_pred HHHH
Q 044441 322 RKAK 325 (333)
Q Consensus 322 ~~a~ 325 (333)
.+.-
T Consensus 298 k~l~ 301 (318)
T COG3980 298 KNLS 301 (318)
T ss_pred hhhh
Confidence 5543
No 82
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.26 E-value=3.2e-05 Score=71.55 Aligned_cols=135 Identities=18% Similarity=0.190 Sum_probs=85.6
Q ss_pred EEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch---hhccc
Q 044441 164 VFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA---KILRH 240 (333)
Q Consensus 164 v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~---~ll~~ 240 (333)
.++..|+... .+....+++++...+.++++ ++..... +.+.+ . ..+|+.+.+++|+. .+++.
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~i-vG~g~~~---------~~l~~-~--~~~~V~~~g~~~~~~~~~~~~~ 261 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVV-IGDGPEL---------DRLRA-K--AGPNVTFLGRVSDEELRDLYAR 261 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEE-EECChhH---------HHHHh-h--cCCCEEEecCCCHHHHHHHHHh
Confidence 3455677653 34466677777777766544 4432111 11111 1 56789999999984 57777
Q ss_pred cccceeEe--ecCc-hhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCc--
Q 044441 241 GRIGGFLS--HCGW-GSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQE-- 315 (333)
Q Consensus 241 ~~~~~~I~--hgG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~-- 315 (333)
+++ +|. .-|. .++.||+++|+|+|+....+ ....+++.+.|+.++. -+.+++.++|.+++++.
T Consensus 262 ad~--~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~~~G~~~~~------~~~~~la~~i~~l~~~~~~ 329 (351)
T cd03804 262 ARA--FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDGVTGILFEE------QTVESLAAAVERFEKNEDF 329 (351)
T ss_pred CCE--EEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCCCCEEEeCC------CCHHHHHHHHHHHHhCccc
Confidence 777 553 3333 56789999999999986543 3334555568888852 37888999999999853
Q ss_pred chHHHHHHHH
Q 044441 316 EGKQIRRKAK 325 (333)
Q Consensus 316 ~~~~~~~~a~ 325 (333)
..+..+++++
T Consensus 330 ~~~~~~~~~~ 339 (351)
T cd03804 330 DPQAIRAHAE 339 (351)
T ss_pred CHHHHHHHHH
Confidence 2234444444
No 83
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.21 E-value=8.1e-05 Score=68.10 Aligned_cols=262 Identities=18% Similarity=0.220 Sum_probs=140.7
Q ss_pred HHHHHHhhcCCCEEE-EcC--CchhHHHHHHHcC--CCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCcccccccc
Q 044441 7 AFCNILETLKPTLVM-YDL--FQPWAAEAAYQYH--IAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKIN 81 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv-~D~--~~~~~~~~A~~lg--iP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 81 (333)
++.+.+...+||++| .|+ |..-..--.++.| +|.|-+.+.+...
T Consensus 76 ~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsVWA------------------------------- 124 (381)
T COG0763 76 ELVRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSVWA------------------------------- 124 (381)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcceee-------------------------------
Confidence 334444567999877 774 3444455557778 9988865432110
Q ss_pred cccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecC-cCcCCCCCCCChhHHHHhhcCCCC
Q 044441 82 RFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVG-PLVQESIFKEDDTKIMDWLSQKEP 160 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~l~~~l~~~~~ 160 (333)
| + ..|....... .|.++. ..-||+++++. .+-..+||| |+....+.....+...+-+....+
T Consensus 125 ---W--r-----~~Ra~~i~~~-~D~lLa--ilPFE~~~y~k----~g~~~~yVGHpl~d~i~~~~~r~~ar~~l~~~~~ 187 (381)
T COG0763 125 ---W--R-----PKRAVKIAKY-VDHLLA--ILPFEPAFYDK----FGLPCTYVGHPLADEIPLLPDREAAREKLGIDAD 187 (381)
T ss_pred ---e--c-----hhhHHHHHHH-hhHeee--ecCCCHHHHHh----cCCCeEEeCChhhhhccccccHHHHHHHhCCCCC
Confidence 0 0 0112222222 343322 22366665432 233489999 887654333345556666666666
Q ss_pred CeEEEEEecCcccCCH---HHHHHHHHHHhc--CCCcEEEEEecCCCcchhhhhcCchhHHHHHHh-cC--CCeEEeccc
Q 044441 161 WSVVFVSFGSEYFLSK---DEMHEIASGLLL--SEVSFIRVLRLHPDEKITIEEALPQGFAEEIER-NN--KGMLVQGWV 232 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~---~~~~~~~~~l~~--~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~--~~~~~~~~~ 232 (333)
++++.+-.||...-=. ..+...++.++. .+.+++.-+.....+ ...+.... .. .+.++ .
T Consensus 188 ~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~----------~~~~~~~~~~~~~~~~~~---~ 254 (381)
T COG0763 188 EKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYR----------RIIEEALKWEVAGLSLIL---I 254 (381)
T ss_pred CCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHHH----------HHHHHHhhccccCceEEe---c
Confidence 7799999999865212 223333344432 346666655432111 01111100 00 11211 2
Q ss_pred cch--hhccccccceeEeecCchhHHHHHHhCcceeccc-cccchhhHHHHHhHhC--------eeeEeecCccCCCcCH
Q 044441 233 PQA--KILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMP-MVYEQSRNAKVVVDIG--------MGMDVPRDKINQRLRR 301 (333)
Q Consensus 233 p~~--~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P-~~~DQ~~na~~~~~~G--------~g~~l~~~~~~~~~~~ 301 (333)
.+. ..+..+++ .+.-+| .-++|+..+|+|||+.= ...=-+.-|+++.+.. +|..+-+.--.+..++
T Consensus 255 ~~~~~~a~~~aD~--al~aSG-T~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~p 331 (381)
T COG0763 255 DGEKRKAFAAADA--ALAASG-TATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTP 331 (381)
T ss_pred CchHHHHHHHhhH--HHHhcc-HHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCH
Confidence 222 45665555 666666 45789999999999872 2222334555555532 2222211101246889
Q ss_pred HHHHHHHHHHhcCc-chHHHHHHHHHHHHHhh
Q 044441 302 EEVARVIKHVLLQE-EGKQIRRKAKEMSERMR 332 (333)
Q Consensus 302 ~~l~~ai~~vl~~~-~~~~~~~~a~~l~~~~~ 332 (333)
+.+.+++..++.++ +.+.+++...++.+.++
T Consensus 332 e~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~ 363 (381)
T COG0763 332 ENLARALEELLLNGDRREALKEKFRELHQYLR 363 (381)
T ss_pred HHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc
Confidence 99999999999863 34577777777777665
No 84
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.19 E-value=0.00038 Score=65.75 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=64.2
Q ss_pred cCCCeEEeccccch-hhccccccceeE--ee--cCc-hhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCcc
Q 044441 222 NNKGMLVQGWVPQA-KILRHGRIGGFL--SH--CGW-GSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKI 295 (333)
Q Consensus 222 ~~~~~~~~~~~p~~-~ll~~~~~~~~I--~h--gG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~ 295 (333)
...++.+.+++++. .++..+++ +| ++ .|. +.++|||++|+|+|+.+...+.. ....|.|+.+.
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~~~g~lv~---- 346 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALPGAELLVA---- 346 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccCCcceEeC----
Confidence 34678899999875 67887777 65 32 343 46999999999999997643321 12346777773
Q ss_pred CCCcCHHHHHHHHHHHhcCc-chHHHHHHHHHHH
Q 044441 296 NQRLRREEVARVIKHVLLQE-EGKQIRRKAKEMS 328 (333)
Q Consensus 296 ~~~~~~~~l~~ai~~vl~~~-~~~~~~~~a~~l~ 328 (333)
-+++++.++|.+++++. ..+.+.+++++..
T Consensus 347 ---~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v 377 (397)
T TIGR03087 347 ---ADPADFAAAILALLANPAEREELGQAARRRV 377 (397)
T ss_pred ---CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 37899999999999852 1245556665543
No 85
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.16 E-value=8.7e-05 Score=68.21 Aligned_cols=93 Identities=20% Similarity=0.251 Sum_probs=59.5
Q ss_pred cCCCeEEeccccch---hhccccccceeEee----cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCc
Q 044441 222 NNKGMLVQGWVPQA---KILRHGRIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDK 294 (333)
Q Consensus 222 ~~~~~~~~~~~p~~---~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~ 294 (333)
...++.+.+++|+. .++..+++ +|.. |..++++||+++|+|+|+....+ ....+.+ .|..+.
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~--~~~~~~--- 319 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGD--AALYFD--- 319 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecC--ceeeeC---
Confidence 45688999999876 46776776 5433 33568999999999999965432 1111222 344553
Q ss_pred cCCCcCHHHHHHHHHHHhcC-cchHHHHHHHHHHH
Q 044441 295 INQRLRREEVARVIKHVLLQ-EEGKQIRRKAKEMS 328 (333)
Q Consensus 295 ~~~~~~~~~l~~ai~~vl~~-~~~~~~~~~a~~l~ 328 (333)
.-+.+++.++|.+++.+ +....+.+++++..
T Consensus 320 ---~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 351 (365)
T cd03809 320 ---PLDPEALAAAIERLLEDPALREELRERGLARA 351 (365)
T ss_pred ---CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 23789999999999884 21234444444333
No 86
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=2.7e-05 Score=60.22 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=81.4
Q ss_pred EEEEecCcccCCHHHHHH--HHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEecc--ccch-hhc
Q 044441 164 VFVSFGSEYFLSKDEMHE--IASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGW--VPQA-KIL 238 (333)
Q Consensus 164 v~vs~Gs~~~~~~~~~~~--~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~p~~-~ll 238 (333)
+||+.||....-...+.. +..-.+....++|..++.... .| -++..+.+| .+.. ++.
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~--------kp----------vagl~v~~F~~~~kiQsli 63 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI--------KP----------VAGLRVYGFDKEEKIQSLI 63 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc--------cc----------ccccEEEeechHHHHHHHh
Confidence 689999985422222222 333333345678888885321 11 123344444 3443 566
Q ss_pred cccccceeEeecCchhHHHHHHhCcceeccccc--------cchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHH
Q 044441 239 RHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMV--------YEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKH 310 (333)
Q Consensus 239 ~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~--------~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~ 310 (333)
..+++ +|+|+|.||++.++..++|.|++|-. .+|..-|..+.+.+.=..... .+..-.+-+.....+
T Consensus 64 ~darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~sp---te~~L~a~l~~s~~~ 138 (161)
T COG5017 64 HDARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSP---TELVLQAGLQVSVAD 138 (161)
T ss_pred hcceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEcC---CchhhHHhHhhhhhh
Confidence 75665 99999999999999999999999964 368889999999998888853 122234445555555
Q ss_pred Hhc
Q 044441 311 VLL 313 (333)
Q Consensus 311 vl~ 313 (333)
++.
T Consensus 139 v~~ 141 (161)
T COG5017 139 VLH 141 (161)
T ss_pred hcC
Confidence 554
No 87
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.12 E-value=0.00071 Score=63.31 Aligned_cols=96 Identities=23% Similarity=0.326 Sum_probs=60.6
Q ss_pred CeEE-eccccch---hhccccccceeEee----cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccC
Q 044441 225 GMLV-QGWVPQA---KILRHGRIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKIN 296 (333)
Q Consensus 225 ~~~~-~~~~p~~---~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~ 296 (333)
++.. .++++.. .++..+++ +|.- +...+++||+++|+|+|+.... .....+++.+.|..++.++..
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~~~~G~~~~~~~~~ 334 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVDGETGFLVPPDNSD 334 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhCCCceEEcCCCCCc
Confidence 4554 3567654 56777776 7653 2346789999999999987543 355566666789988632100
Q ss_pred CCcCHHHHHHHHHHHhcCc-chHHHHHHHHH
Q 044441 297 QRLRREEVARVIKHVLLQE-EGKQIRRKAKE 326 (333)
Q Consensus 297 ~~~~~~~l~~ai~~vl~~~-~~~~~~~~a~~ 326 (333)
..-..+++.++|.+++++. ..+++.+++++
T Consensus 335 ~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~ 365 (388)
T TIGR02149 335 ADGFQAELAKAINILLADPELAKKMGIAGRK 365 (388)
T ss_pred ccchHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 1112389999999999842 12345555554
No 88
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.11 E-value=0.00043 Score=64.56 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=61.7
Q ss_pred CCeEEeccccch-hhccccccceeEe--e--cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCC
Q 044441 224 KGMLVQGWVPQA-KILRHGRIGGFLS--H--CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQR 298 (333)
Q Consensus 224 ~~~~~~~~~p~~-~ll~~~~~~~~I~--h--gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~ 298 (333)
.++.+.++..+. .+++.+++ +|. + |-..+++||+++|+|+|+....+ +...+++-..|..++ .
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~~~g~~~~------~ 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQHGVTGALVP------P 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcCCCceEEeC------C
Confidence 345555554443 67887777 663 3 34579999999999999976543 455555556788874 2
Q ss_pred cCHHHHHHHHHHHhcCc-chHHHHHHHHHH
Q 044441 299 LRREEVARVIKHVLLQE-EGKQIRRKAKEM 327 (333)
Q Consensus 299 ~~~~~l~~ai~~vl~~~-~~~~~~~~a~~l 327 (333)
-+.+++.++|.+++++. ....+.+++++.
T Consensus 323 ~d~~~la~~i~~l~~~~~~~~~~~~~a~~~ 352 (374)
T TIGR03088 323 GDAVALARALQPYVSDPAARRAHGAAGRAR 352 (374)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 47899999999999842 123444555543
No 89
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.11 E-value=0.00049 Score=65.31 Aligned_cols=93 Identities=19% Similarity=0.275 Sum_probs=66.1
Q ss_pred CCCeEEeccccch---hhccccccceeEee---------cCc-hhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeE
Q 044441 223 NKGMLVQGWVPQA---KILRHGRIGGFLSH---------CGW-GSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMD 289 (333)
Q Consensus 223 ~~~~~~~~~~p~~---~ll~~~~~~~~I~h---------gG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~ 289 (333)
.+++.+.+|+|+. +++..+++ ||.- -|. ++++||+++|+|+|+....+ ....+++-..|+.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~~~G~l 351 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEADKSGWL 351 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCCCceEE
Confidence 4679999999975 46777776 6642 233 57899999999999975543 3344555567888
Q ss_pred eecCccCCCcCHHHHHHHHHHHhc-Cc-chHHHHHHHHHH
Q 044441 290 VPRDKINQRLRREEVARVIKHVLL-QE-EGKQIRRKAKEM 327 (333)
Q Consensus 290 l~~~~~~~~~~~~~l~~ai~~vl~-~~-~~~~~~~~a~~l 327 (333)
++. -+.+++.++|.++++ +. ...++.+++++.
T Consensus 352 v~~------~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~ 385 (406)
T PRK15427 352 VPE------NDAQALAQRLAAFSQLDTDELAPVVKRAREK 385 (406)
T ss_pred eCC------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 852 479999999999998 52 234566666654
No 90
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.05 E-value=0.0015 Score=60.14 Aligned_cols=131 Identities=15% Similarity=0.051 Sum_probs=76.7
Q ss_pred eEEEEEecCccc-CCHHHHHHHHHHHhcCCCcE-EEEEecCCCcchhhhhcCchhHHHHHH--hcCCCeEEeccccch-h
Q 044441 162 SVVFVSFGSEYF-LSKDEMHEIASGLLLSEVSF-IRVLRLHPDEKITIEEALPQGFAEEIE--RNNKGMLVQGWVPQA-K 236 (333)
Q Consensus 162 ~~v~vs~Gs~~~-~~~~~~~~~~~~l~~~~~~~-i~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~p~~-~ 236 (333)
..+++..|+... -..+.+...+..+.+.+.++ ++.+|..... +.+.+..+ ....++.+.++..+. .
T Consensus 192 ~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~---------~~~~~~~~~~~~~~~v~~~g~~~~~~~ 262 (358)
T cd03812 192 KFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELE---------EEIKKKVKELGLEDKVIFLGVRNDVPE 262 (358)
T ss_pred CEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCchH---------HHHHHHHHhcCCCCcEEEecccCCHHH
Confidence 366777777653 23444555555554433333 3333432111 11111110 134678888875553 6
Q ss_pred hccccccceeEee----cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHh
Q 044441 237 ILRHGRIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVL 312 (333)
Q Consensus 237 ll~~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl 312 (333)
++..+++ +|.- |-.++++|||++|+|+|+....+ ....+.+ +.|..+. .-++++++++|.+++
T Consensus 263 ~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~-~~~~~~~------~~~~~~~a~~i~~l~ 329 (358)
T cd03812 263 LLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD-LVKFLSL------DESPEIWAEEILKLK 329 (358)
T ss_pred HHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc-CccEEeC------CCCHHHHHHHHHHHH
Confidence 8887776 6643 44689999999999999876544 3334444 5555553 125799999999999
Q ss_pred cC
Q 044441 313 LQ 314 (333)
Q Consensus 313 ~~ 314 (333)
++
T Consensus 330 ~~ 331 (358)
T cd03812 330 SE 331 (358)
T ss_pred hC
Confidence 84
No 91
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.05 E-value=0.0012 Score=60.81 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=54.4
Q ss_pred CCCeEEeccccch-hhccccccceeEeecC----chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCC
Q 044441 223 NKGMLVQGWVPQA-KILRHGRIGGFLSHCG----WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQ 297 (333)
Q Consensus 223 ~~~~~~~~~~p~~-~ll~~~~~~~~I~hgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~ 297 (333)
.+++.+.++..+. .++..+++ +|.-.. .++++||+++|+|+|+. |...+...+++.| ..+.
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~g--~~~~------ 309 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDSG--LIVP------ 309 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCCc--eEeC------
Confidence 4578888877654 67887777 655432 57899999999999975 3344555555544 4442
Q ss_pred CcCHHHHHHHHHHHhc
Q 044441 298 RLRREEVARVIKHVLL 313 (333)
Q Consensus 298 ~~~~~~l~~ai~~vl~ 313 (333)
.-+.+++.++|.++++
T Consensus 310 ~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 310 ISDPEALANKIDEILK 325 (360)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 1478899999999984
No 92
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.03 E-value=0.001 Score=63.75 Aligned_cols=94 Identities=17% Similarity=0.160 Sum_probs=63.2
Q ss_pred CCCeEEeccccchh---hcccc--ccceeEeec---C-chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecC
Q 044441 223 NKGMLVQGWVPQAK---ILRHG--RIGGFLSHC---G-WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRD 293 (333)
Q Consensus 223 ~~~~~~~~~~p~~~---ll~~~--~~~~~I~hg---G-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~ 293 (333)
..++.+.+++++.+ +++.+ ++++||... | ..+++||+++|+|+|+....+ +...+.+...|+.+..
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~~~~~G~lv~~- 390 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIANCRNGLLVDV- 390 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhcCCCcEEEeCC-
Confidence 45677777777654 45544 224587653 3 469999999999999886533 4455555567888852
Q ss_pred ccCCCcCHHHHHHHHHHHhcC-cchHHHHHHHHH
Q 044441 294 KINQRLRREEVARVIKHVLLQ-EEGKQIRRKAKE 326 (333)
Q Consensus 294 ~~~~~~~~~~l~~ai~~vl~~-~~~~~~~~~a~~ 326 (333)
-++++++++|.+++++ +....+.+++++
T Consensus 391 -----~d~~~la~~i~~ll~~~~~~~~~~~~a~~ 419 (439)
T TIGR02472 391 -----LDLEAIASALEDALSDSSQWQLWSRNGIE 419 (439)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 4789999999999984 222345555544
No 93
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.01 E-value=0.0017 Score=60.66 Aligned_cols=91 Identities=21% Similarity=0.153 Sum_probs=58.6
Q ss_pred CCCeEEeccc--cch---hhccccccceeEeecC----chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecC
Q 044441 223 NKGMLVQGWV--PQA---KILRHGRIGGFLSHCG----WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRD 293 (333)
Q Consensus 223 ~~~~~~~~~~--p~~---~ll~~~~~~~~I~hgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~ 293 (333)
..++.+.++. +.. .+++.+++ |+...- ..+++||+++|+|+|+....+ ....+.+...|+.++
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~~~g~~~~-- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDGETGFLVD-- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccCCceEEeC--
Confidence 4567777766 332 46676666 775432 459999999999999876433 233455556777663
Q ss_pred ccCCCcCHHHHHHHHHHHhcCc-chHHHHHHHHHH
Q 044441 294 KINQRLRREEVARVIKHVLLQE-EGKQIRRKAKEM 327 (333)
Q Consensus 294 ~~~~~~~~~~l~~ai~~vl~~~-~~~~~~~~a~~l 327 (333)
+.+.+..+|.++++++ ..+++.+++++.
T Consensus 323 ------~~~~~a~~i~~ll~~~~~~~~~~~~a~~~ 351 (372)
T cd03792 323 ------TVEEAAVRILYLLRDPELRRKMGANAREH 351 (372)
T ss_pred ------CcHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 4567788999999842 123455555553
No 94
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.96 E-value=0.0014 Score=63.75 Aligned_cols=101 Identities=15% Similarity=0.181 Sum_probs=67.4
Q ss_pred CCCeEEeccccchhhccccccceeEee---cC-chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCC
Q 044441 223 NKGMLVQGWVPQAKILRHGRIGGFLSH---CG-WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQR 298 (333)
Q Consensus 223 ~~~~~~~~~~p~~~ll~~~~~~~~I~h---gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~ 298 (333)
.+++.+.++.+...++..+++ +|.- -| ..+++||+++|+|+|+.-.. ..+...+++-.-|..+..+. +.
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g~nG~lv~~~~--~~ 447 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDNKNGYLIPIDE--EE 447 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCCCCEEEEeCCc--cc
Confidence 456888888877788888877 6652 23 46999999999999997542 12344455555788885210 11
Q ss_pred cC----HHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Q 044441 299 LR----REEVARVIKHVLLQEEGKQIRRKAKEMSER 330 (333)
Q Consensus 299 ~~----~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~ 330 (333)
-+ .++++++|.+++.++.-..+.+++.+.++.
T Consensus 448 ~d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~ 483 (500)
T TIGR02918 448 DDEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEG 483 (500)
T ss_pred cchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh
Confidence 12 788999999999633234666777765544
No 95
>PLN02275 transferase, transferring glycosyl groups
Probab=97.96 E-value=0.0032 Score=58.91 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=53.5
Q ss_pred CCeEEec-cccchh---hccccccceeEe-e---cC---chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeec
Q 044441 224 KGMLVQG-WVPQAK---ILRHGRIGGFLS-H---CG---WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPR 292 (333)
Q Consensus 224 ~~~~~~~-~~p~~~---ll~~~~~~~~I~-h---gG---~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~ 292 (333)
.|+.+.. |+|..+ +++.+|+ +|. + -| -++++||+++|+|+|+.... .+...+++.+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv~~g~~G~lv~- 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELVKDGKNGLLFS- 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHccCCCCeEEEC-
Confidence 4566544 787754 5777776 763 1 12 35799999999999997533 2666677777899983
Q ss_pred CccCCCcCHHHHHHHHHHHh
Q 044441 293 DKINQRLRREEVARVIKHVL 312 (333)
Q Consensus 293 ~~~~~~~~~~~l~~ai~~vl 312 (333)
+++++.++|.++|
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 4788999988764
No 96
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=97.93 E-value=0.0023 Score=60.01 Aligned_cols=92 Identities=17% Similarity=0.147 Sum_probs=64.6
Q ss_pred CCCeEEeccccch---hhccccccceeEeecC----chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCcc
Q 044441 223 NKGMLVQGWVPQA---KILRHGRIGGFLSHCG----WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKI 295 (333)
Q Consensus 223 ~~~~~~~~~~p~~---~ll~~~~~~~~I~hgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~ 295 (333)
.+++.+.+++|+. .++..+++ ++.... ..+++||+++|+|+|+.-..+ ....+.+.+.|..+.
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~~~g~~~~---- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDGETGFLCE---- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccCCceEEeC----
Confidence 5689999999876 46777776 664221 367899999999999974433 334455556787774
Q ss_pred CCCcCHHHHHHHHHHHhcCc-chHHHHHHHHHH
Q 044441 296 NQRLRREEVARVIKHVLLQE-EGKQIRRKAKEM 327 (333)
Q Consensus 296 ~~~~~~~~l~~ai~~vl~~~-~~~~~~~~a~~l 327 (333)
.+.+++.++|.++++++ ...++++++++.
T Consensus 349 ---~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~ 378 (392)
T cd03805 349 ---PTPEEFAEAMLKLANDPDLADRMGAAGRKR 378 (392)
T ss_pred ---CCHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 27899999999999852 234566666654
No 97
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=97.93 E-value=0.0016 Score=61.44 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=53.7
Q ss_pred CCCeEEeccccch---hhccccccceeEeec---Cc-hhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCcc
Q 044441 223 NKGMLVQGWVPQA---KILRHGRIGGFLSHC---GW-GSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKI 295 (333)
Q Consensus 223 ~~~~~~~~~~p~~---~ll~~~~~~~~I~hg---G~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~ 295 (333)
.+++.+.+|+|+. .+++.+++ +|.-. |. .++.||+++|+|+|+.+..+- ...+. .|.+....
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~----~e~i~-~~~~~~~~---- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI----PEVLP-PDMILLAE---- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCCc----hhhee-CCceeecC----
Confidence 4568888999864 57777776 65422 33 499999999999999876532 22333 34444342
Q ss_pred CCCcCHHHHHHHHHHHhcC
Q 044441 296 NQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 296 ~~~~~~~~l~~ai~~vl~~ 314 (333)
.+.+++.+++.+++++
T Consensus 318 ---~~~~~l~~~l~~~l~~ 333 (398)
T cd03796 318 ---PDVESIVRKLEEAISI 333 (398)
T ss_pred ---CCHHHHHHHHHHHHhC
Confidence 2789999999999974
No 98
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=97.92 E-value=0.0038 Score=57.49 Aligned_cols=94 Identities=17% Similarity=0.192 Sum_probs=63.1
Q ss_pred CCCeEEecccc-ch---hhccccccceeEeec----CchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCc
Q 044441 223 NKGMLVQGWVP-QA---KILRHGRIGGFLSHC----GWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDK 294 (333)
Q Consensus 223 ~~~~~~~~~~p-~~---~ll~~~~~~~~I~hg----G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~ 294 (333)
..++.+.+|++ +. .+++.+++ +|... ..++++||+++|+|+|+....+ ....+.+.+.|..+.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~~~~~~g~~~~--- 313 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIVDHGVTGYLAK--- 313 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCCC----ChhheeCCCceEEeC---
Confidence 45788888988 32 46776666 77753 3589999999999999875432 223344445777774
Q ss_pred cCCCcCHHHHHHHHHHHhcCcc-hHHHHHHHHHHH
Q 044441 295 INQRLRREEVARVIKHVLLQEE-GKQIRRKAKEMS 328 (333)
Q Consensus 295 ~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~a~~l~ 328 (333)
..+.+++.+++.+++++.+ ...+.+++++..
T Consensus 314 ---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 345 (365)
T cd03825 314 ---PGDPEDLAEGIEWLLADPDEREELGEAARELA 345 (365)
T ss_pred ---CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 2478999999999998421 234555555443
No 99
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.91 E-value=0.00042 Score=65.16 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=64.4
Q ss_pred CCCeEEeccccch---hhccccccceeEeec----C-chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCc
Q 044441 223 NKGMLVQGWVPQA---KILRHGRIGGFLSHC----G-WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDK 294 (333)
Q Consensus 223 ~~~~~~~~~~p~~---~ll~~~~~~~~I~hg----G-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~ 294 (333)
..++.+.+++|+. .+++.+++ +|... | ..+++||+++|+|+|+....+ +...+++...|..+.
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~~~~G~~l~--- 326 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLEGITGYHLA--- 326 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhcccCCceEEEe---
Confidence 4578888898854 56787777 76533 3 267899999999999986533 445555556787552
Q ss_pred cCCCcCHHHHHHHHHHHhcCcchHHHHHHHHH
Q 044441 295 INQRLRREEVARVIKHVLLQEEGKQIRRKAKE 326 (333)
Q Consensus 295 ~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~ 326 (333)
+..+.+++.++|.+++++.+..++.+++++
T Consensus 327 --~~~d~~~la~~I~~ll~d~~~~~~~~~ar~ 356 (380)
T PRK15484 327 --EPMTSDSIISDINRTLADPELTQIAEQAKD 356 (380)
T ss_pred --CCCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 234799999999999985323345555553
No 100
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.84 E-value=0.001 Score=63.34 Aligned_cols=79 Identities=22% Similarity=0.049 Sum_probs=54.6
Q ss_pred CCCeEEeccccch---hhccccccceeEee----cCchhHHHHHHhCcceeccccccchhhHHHHHh---HhCeeeEeec
Q 044441 223 NKGMLVQGWVPQA---KILRHGRIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVV---DIGMGMDVPR 292 (333)
Q Consensus 223 ~~~~~~~~~~p~~---~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~---~~G~g~~l~~ 292 (333)
.+++.+.+++|+. .+++.+++ +|+- +=..++.|||++|+|+|+.-..+. ....++ +...|+...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g~~G~l~~- 377 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGGPTGFLAS- 377 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCCCceEEeC-
Confidence 4688898998875 57777776 5532 113588999999999998654321 111222 345777662
Q ss_pred CccCCCcCHHHHHHHHHHHhcC
Q 044441 293 DKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 293 ~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
+++++.++|.+++++
T Consensus 378 -------d~~~la~ai~~ll~~ 392 (419)
T cd03806 378 -------TAEEYAEAIEKILSL 392 (419)
T ss_pred -------CHHHHHHHHHHHHhC
Confidence 789999999999984
No 101
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.83 E-value=0.0056 Score=56.44 Aligned_cols=98 Identities=20% Similarity=0.364 Sum_probs=70.2
Q ss_pred cCCCeEEeccccchhhc---cccccceeEeec-------Cc------hhHHHHHHhCcceeccccccchhhHHHHHhHhC
Q 044441 222 NNKGMLVQGWVPQAKIL---RHGRIGGFLSHC-------GW------GSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIG 285 (333)
Q Consensus 222 ~~~~~~~~~~~p~~~ll---~~~~~~~~I~hg-------G~------~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G 285 (333)
..+|+.+.+|+|..++. +. +.+++...- .+ +-+.+.|++|+|+|+.+ +...+..+++.+
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V~~~~ 279 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFIVENG 279 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHHHhCC
Confidence 45689999999987653 33 333332211 11 22677899999999864 466888999999
Q ss_pred eeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhhC
Q 044441 286 MGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSERMRR 333 (333)
Q Consensus 286 ~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~ 333 (333)
.|+.++ +.+++.+++.++.. ++-..+++|++++++.+++
T Consensus 280 ~G~~v~--------~~~el~~~l~~~~~-~~~~~m~~n~~~~~~~~~~ 318 (333)
T PRK09814 280 LGFVVD--------SLEELPEIIDNITE-EEYQEMVENVKKISKLLRN 318 (333)
T ss_pred ceEEeC--------CHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHhc
Confidence 999994 66789999988543 3345789999999998763
No 102
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.80 E-value=0.00063 Score=64.55 Aligned_cols=97 Identities=22% Similarity=0.312 Sum_probs=68.0
Q ss_pred CCCeEEeccccchh---hccccccceeEeecC----chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCcc
Q 044441 223 NKGMLVQGWVPQAK---ILRHGRIGGFLSHCG----WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKI 295 (333)
Q Consensus 223 ~~~~~~~~~~p~~~---ll~~~~~~~~I~hgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~ 295 (333)
..++.+.+|+++.+ ++..+++++||...- .++++||+++|+|+|+....+ ....+.+.+.|..+.
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i~~~~~G~l~~---- 359 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIVDNGGNGLLLS---- 359 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHhcCCCcEEEeC----
Confidence 45688899999764 445445555775543 468999999999999865433 455666556898884
Q ss_pred CCCcCHHHHHHHHHHHhcC-cchHHHHHHHHHHH
Q 044441 296 NQRLRREEVARVIKHVLLQ-EEGKQIRRKAKEMS 328 (333)
Q Consensus 296 ~~~~~~~~l~~ai~~vl~~-~~~~~~~~~a~~l~ 328 (333)
..-+.+++.++|.+++++ +....++++|++.-
T Consensus 360 -~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~ 392 (407)
T cd04946 360 -KDPTPNELVSSLSKFIDNEEEYQTMREKAREKW 392 (407)
T ss_pred -CCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 334789999999999984 22345666666653
No 103
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.80 E-value=0.00075 Score=55.52 Aligned_cols=92 Identities=25% Similarity=0.347 Sum_probs=66.1
Q ss_pred cCCCeEEeccccc---hhhccccccceeEee----cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCc
Q 044441 222 NNKGMLVQGWVPQ---AKILRHGRIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDK 294 (333)
Q Consensus 222 ~~~~~~~~~~~p~---~~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~ 294 (333)
...++.+.++.+. ..++..+++ +|+. |...++.||+++|+|+|+. +...+...+.+.+.|..++
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~~~g~~~~--- 141 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDGVNGFLFD--- 141 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTTTSEEEES---
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccccceEEeC---
Confidence 3457888888883 267777666 8776 5678999999999999975 4555666777777899995
Q ss_pred cCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 044441 295 INQRLRREEVARVIKHVLLQEEGKQIRRKAKEMS 328 (333)
Q Consensus 295 ~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~ 328 (333)
. .+.+++.++|.+++. +++.+++..+-+
T Consensus 142 --~-~~~~~l~~~i~~~l~---~~~~~~~l~~~~ 169 (172)
T PF00534_consen 142 --P-NDIEELADAIEKLLN---DPELRQKLGKNA 169 (172)
T ss_dssp --T-TSHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred --C-CCHHHHHHHHHHHHC---CHHHHHHHHHHh
Confidence 2 399999999999998 555554444433
No 104
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.79 E-value=0.0063 Score=59.01 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=61.4
Q ss_pred CCCeEEeccccchhhccccccceeEee----cCchhHHHHHHhCcceeccccccchhhHHHHHhHh------CeeeEeec
Q 044441 223 NKGMLVQGWVPQAKILRHGRIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDI------GMGMDVPR 292 (333)
Q Consensus 223 ~~~~~~~~~~p~~~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~------G~g~~l~~ 292 (333)
.+++.+.+...-.++++.+++ +|.. |-.++++||+++|+|+|+-.. ......+.+. ..|..+.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~~~~~~~g~~G~lv~- 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEGADDEALGPAGEVVP- 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcCCcccccCCceEEEC-
Confidence 467888774444577887776 6543 334789999999999999543 3344445542 2677774
Q ss_pred CccCCCcCHHHHHHHHHHHhcC-cchHHHHHHHHH
Q 044441 293 DKINQRLRREEVARVIKHVLLQ-EEGKQIRRKAKE 326 (333)
Q Consensus 293 ~~~~~~~~~~~l~~ai~~vl~~-~~~~~~~~~a~~ 326 (333)
.-+.+++.++|.+++++ +..+++.+++++
T Consensus 426 -----~~d~~~la~ai~~ll~~~~~~~~~~~~a~~ 455 (475)
T cd03813 426 -----PADPEALARAILRLLKDPELRRAMGEAGRK 455 (475)
T ss_pred -----CCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 24789999999999984 222345555544
No 105
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.70 E-value=0.00027 Score=67.21 Aligned_cols=123 Identities=18% Similarity=0.240 Sum_probs=71.6
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHh---cCCCeEEeccccchhh
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIER---NNKGMLVQGWVPQAKI 237 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~p~~~l 237 (333)
.-++|.||.+..+..++.+..-.+-|++.+...+|....+.... ..+.+++++ .++.+++.++.+..+.
T Consensus 284 d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~--------~~l~~~~~~~Gv~~~Ri~f~~~~~~~eh 355 (468)
T PF13844_consen 284 DAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGE--------ARLRRRFAAHGVDPDRIIFSPVAPREEH 355 (468)
T ss_dssp SSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHH--------HHHHHHHHHTTS-GGGEEEEE---HHHH
T ss_pred CceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHH--------HHHHHHHHHcCCChhhEEEcCCCCHHHH
Confidence 34999999999999999999999999999988999887543211 112222211 3456777777776543
Q ss_pred cc-ccccceeE---eecCchhHHHHHHhCcceecccccc-chhhHHHHHhHhCeeeEee
Q 044441 238 LR-HGRIGGFL---SHCGWGSAVEGMVFGVPIIAMPMVY-EQSRNAKVVVDIGMGMDVP 291 (333)
Q Consensus 238 l~-~~~~~~~I---~hgG~~s~~eal~~GvP~i~~P~~~-DQ~~na~~~~~~G~g~~l~ 291 (333)
+. +..+++++ ..+|++|++|||+.|||+|++|-.. =...-|-.+..+|+...+-
T Consensus 356 l~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA 414 (468)
T PF13844_consen 356 LRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIA 414 (468)
T ss_dssp HHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-
T ss_pred HHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcC
Confidence 32 23344464 4678899999999999999998432 2334455677789888775
No 106
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=97.68 E-value=0.0058 Score=63.54 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=63.3
Q ss_pred CCCeEEeccccchh---hccccc--cceeEeec---C-chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecC
Q 044441 223 NKGMLVQGWVPQAK---ILRHGR--IGGFLSHC---G-WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRD 293 (333)
Q Consensus 223 ~~~~~~~~~~p~~~---ll~~~~--~~~~I~hg---G-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~ 293 (333)
..+|.+.+++++.+ ++..++ .++||.-. | ..+++||+++|+|+|+....+ ....++.-..|+.++.
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g~nGlLVdP- 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVLDNGLLVDP- 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccCCcEEEECC-
Confidence 45677888887754 455442 23477642 3 469999999999999986543 2233344456888852
Q ss_pred ccCCCcCHHHHHHHHHHHhcCc-chHHHHHHHHHHH
Q 044441 294 KINQRLRREEVARVIKHVLLQE-EGKQIRRKAKEMS 328 (333)
Q Consensus 294 ~~~~~~~~~~l~~ai~~vl~~~-~~~~~~~~a~~l~ 328 (333)
-+.++++++|.+++++. .-..+.+++++..
T Consensus 622 -----~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v 652 (1050)
T TIGR02468 622 -----HDQQAIADALLKLVADKQLWAECRQNGLKNI 652 (1050)
T ss_pred -----CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 47899999999999842 1234555555443
No 107
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.64 E-value=0.0063 Score=56.04 Aligned_cols=90 Identities=20% Similarity=0.345 Sum_probs=55.5
Q ss_pred cCCCeEEeccccchh---hccccccceeEeecCc-----hhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecC
Q 044441 222 NNKGMLVQGWVPQAK---ILRHGRIGGFLSHCGW-----GSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRD 293 (333)
Q Consensus 222 ~~~~~~~~~~~p~~~---ll~~~~~~~~I~hgG~-----~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~ 293 (333)
..+++.+.+++++.+ ++..+++ ++.+.-. ++++||+++|+|+|+....+. ...+++ .|.....
T Consensus 246 ~~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~~--~g~~~~~- 316 (363)
T cd04955 246 ADPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLGD--KAIYFKV- 316 (363)
T ss_pred CCCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeecC--CeeEecC-
Confidence 456899999998864 5555555 6554432 579999999999998865432 112222 3444431
Q ss_pred ccCCCcCHHHHHHHHHHHhcC-cchHHHHHHHHHH
Q 044441 294 KINQRLRREEVARVIKHVLLQ-EEGKQIRRKAKEM 327 (333)
Q Consensus 294 ~~~~~~~~~~l~~ai~~vl~~-~~~~~~~~~a~~l 327 (333)
.+.+.++|.+++++ +.-..+.+++++.
T Consensus 317 -------~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 344 (363)
T cd04955 317 -------GDDLASLLEELEADPEEVSAMAKAARER 344 (363)
T ss_pred -------chHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 11299999999984 1223455555543
No 108
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=97.58 E-value=0.0077 Score=54.84 Aligned_cols=127 Identities=20% Similarity=0.087 Sum_probs=76.5
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHh-c--CCCeEEeccccch---h
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIER-N--NKGMLVQGWVPQA---K 236 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~-~--~~~~~~~~~~p~~---~ 236 (333)
...+..|.... .+....+++++++.+.++++. +..... ..+....+. . .+++.+.+++++. .
T Consensus 172 ~~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~-G~~~~~---------~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~ 239 (335)
T cd03802 172 DYLLFLGRISP--EKGPHLAIRAARRAGIPLKLA-GPVSDP---------DYFYREIAPELLDGPDIEYLGEVGGAEKAE 239 (335)
T ss_pred CEEEEEEeecc--ccCHHHHHHHHHhcCCeEEEE-eCCCCH---------HHHHHHHHHhcccCCcEEEeCCCCHHHHHH
Confidence 34455576642 333455667777777765544 432211 111111110 1 4689999999875 4
Q ss_pred hccccccceeEee--cC-chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 237 ILRHGRIGGFLSH--CG-WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 237 ll~~~~~~~~I~h--gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
+++.+++-++-+. -| ..+++||+++|+|+|+....+ +...+.+...|..++ ..+++.++|.+++.
T Consensus 240 ~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i~~~~~g~l~~--------~~~~l~~~l~~l~~ 307 (335)
T cd03802 240 LLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVVEDGVTGFLVD--------SVEELAAAVARADR 307 (335)
T ss_pred HHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhheeCCCcEEEeC--------CHHHHHHHHHHHhc
Confidence 5777776222222 33 358999999999999876532 333444434788874 28999999998876
No 109
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.43 E-value=0.034 Score=55.47 Aligned_cols=75 Identities=11% Similarity=0.093 Sum_probs=50.5
Q ss_pred CeEEeccccch-hhccccccceeEeec----CchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCc
Q 044441 225 GMLVQGWVPQA-KILRHGRIGGFLSHC----GWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRL 299 (333)
Q Consensus 225 ~~~~~~~~p~~-~ll~~~~~~~~I~hg----G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~ 299 (333)
++.+.++.++. .++..+++ ||.-. =.++++||+++|+|+|+.-..+... +.+.+.|... -
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g~nGll~--------~ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSFPNCLTY--------K 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----EeecCCeEec--------C
Confidence 35566666654 47886666 76532 2478999999999999987654321 2222333322 2
Q ss_pred CHHHHHHHHHHHhcC
Q 044441 300 RREEVARVIKHVLLQ 314 (333)
Q Consensus 300 ~~~~l~~ai~~vl~~ 314 (333)
+.+++.++|.++|.+
T Consensus 667 D~EafAeAI~~LLsd 681 (794)
T PLN02501 667 TSEDFVAKVKEALAN 681 (794)
T ss_pred CHHHHHHHHHHHHhC
Confidence 689999999999984
No 110
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.40 E-value=0.0087 Score=55.16 Aligned_cols=134 Identities=15% Similarity=0.271 Sum_probs=84.2
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhc----C-CCcEEEEEecCCCcchhhhhcCchhHH-HHHHhcCCCeEEe---cc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLL----S-EVSFIRVLRLHPDEKITIEEALPQGFA-EEIERNNKGMLVQ---GW 231 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~----~-~~~~i~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~---~~ 231 (333)
+..++|++=-..+.. +.++.+++++.+ . +..+|.-+... ... .++. .+++ ...++... +|
T Consensus 204 ~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~--~~v-------~e~~~~~L~-~~~~v~li~pl~~ 272 (383)
T COG0381 204 KKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPR--PRV-------RELVLKRLK-NVERVKLIDPLGY 272 (383)
T ss_pred CcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCC--hhh-------hHHHHHHhC-CCCcEEEeCCcch
Confidence 348888775444433 455566665543 3 34444443322 111 1111 2221 23355554 45
Q ss_pred ccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHH
Q 044441 232 VPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 232 ~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~v 311 (333)
.+...++.++.+ ++|-.| |---||-..|+|.+++=...+++. ..+.|.-+.+. .+.+.+.+++.++
T Consensus 273 ~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE----~v~agt~~lvg-------~~~~~i~~~~~~l 338 (383)
T COG0381 273 LDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE----GVEAGTNILVG-------TDEENILDAATEL 338 (383)
T ss_pred HHHHHHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc----ceecCceEEeC-------ccHHHHHHHHHHH
Confidence 666788898877 999887 457799999999999988888876 44566666664 5779999999999
Q ss_pred hcCcchHHHHH
Q 044441 312 LLQEEGKQIRR 322 (333)
Q Consensus 312 l~~~~~~~~~~ 322 (333)
++ +++..+
T Consensus 339 l~---~~~~~~ 346 (383)
T COG0381 339 LE---DEEFYE 346 (383)
T ss_pred hh---ChHHHH
Confidence 98 444444
No 111
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.37 E-value=0.021 Score=53.43 Aligned_cols=78 Identities=18% Similarity=0.103 Sum_probs=52.1
Q ss_pred CCCeEEeccccch---hhccccccceeE------eecCc-hhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeec
Q 044441 223 NKGMLVQGWVPQA---KILRHGRIGGFL------SHCGW-GSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPR 292 (333)
Q Consensus 223 ~~~~~~~~~~p~~---~ll~~~~~~~~I------~hgG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~ 292 (333)
.+|+.+.+++|.. .+++++++.++- +.++. +.+.|++++|+|+|..++. ..++..+.++.+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~-------~~~~~~~~~~~~~- 324 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLP-------EVRRYEDEVVLIA- 324 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcH-------HHHhhcCcEEEeC-
Confidence 4689999999865 467777773331 22232 4689999999999987632 2223334333332
Q ss_pred CccCCCcCHHHHHHHHHHHhcC
Q 044441 293 DKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 293 ~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
-+.+++.++|++++.+
T Consensus 325 ------~d~~~~~~ai~~~l~~ 340 (373)
T cd04950 325 ------DDPEEFVAAIEKALLE 340 (373)
T ss_pred ------CCHHHHHHHHHHHHhc
Confidence 2799999999998763
No 112
>PLN02846 digalactosyldiacylglycerol synthase
Probab=97.35 E-value=0.063 Score=51.56 Aligned_cols=72 Identities=11% Similarity=0.130 Sum_probs=50.6
Q ss_pred EeccccchhhccccccceeEeec----CchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHH
Q 044441 228 VQGWVPQAKILRHGRIGGFLSHC----GWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREE 303 (333)
Q Consensus 228 ~~~~~p~~~ll~~~~~~~~I~hg----G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~ 303 (333)
+.++....+++...++ ||.-+ =.++++||+++|+|+|+.-..+ | ..+.+-+.|...+ +.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~~ng~~~~--------~~~~ 352 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQFPNCRTYD--------DGKG 352 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecCCceEecC--------CHHH
Confidence 4455555568887766 87763 3579999999999999985443 2 3344445555552 6889
Q ss_pred HHHHHHHHhcC
Q 044441 304 VARVIKHVLLQ 314 (333)
Q Consensus 304 l~~ai~~vl~~ 314 (333)
+.+++.++|.+
T Consensus 353 ~a~ai~~~l~~ 363 (462)
T PLN02846 353 FVRATLKALAE 363 (462)
T ss_pred HHHHHHHHHcc
Confidence 99999999974
No 113
>PLN02949 transferase, transferring glycosyl groups
Probab=97.34 E-value=0.01 Score=57.22 Aligned_cols=93 Identities=23% Similarity=0.111 Sum_probs=59.6
Q ss_pred CCCeEEeccccch---hhccccccceeEe---ecCc-hhHHHHHHhCcceecccccc---chhhHHHHHhHhC-eeeEee
Q 044441 223 NKGMLVQGWVPQA---KILRHGRIGGFLS---HCGW-GSAVEGMVFGVPIIAMPMVY---EQSRNAKVVVDIG-MGMDVP 291 (333)
Q Consensus 223 ~~~~~~~~~~p~~---~ll~~~~~~~~I~---hgG~-~s~~eal~~GvP~i~~P~~~---DQ~~na~~~~~~G-~g~~l~ 291 (333)
.+++.+.+++|+. .+++.+++ +|. +-|. .++.||+++|+|+|+....+ |...+. ..| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~----~~g~tG~l~- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE----DGQQTGFLA- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC----CCCcccccC-
Confidence 5679898999865 46777776 663 2233 47999999999999986543 111110 002 34443
Q ss_pred cCccCCCcCHHHHHHHHHHHhcC--cchHHHHHHHHHHHH
Q 044441 292 RDKINQRLRREEVARVIKHVLLQ--EEGKQIRRKAKEMSE 329 (333)
Q Consensus 292 ~~~~~~~~~~~~l~~ai~~vl~~--~~~~~~~~~a~~l~~ 329 (333)
-+.++++++|.+++++ +...++.+++++..+
T Consensus 407 -------~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~ 439 (463)
T PLN02949 407 -------TTVEEYADAILEVLRMRETERLEIAAAARKRAN 439 (463)
T ss_pred -------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 1789999999999973 222356666665543
No 114
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.33 E-value=0.073 Score=52.01 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=46.8
Q ss_pred CCCeEEeccccch-hhccccccceeEee---cC-chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEee
Q 044441 223 NKGMLVQGWVPQA-KILRHGRIGGFLSH---CG-WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVP 291 (333)
Q Consensus 223 ~~~~~~~~~~p~~-~ll~~~~~~~~I~h---gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~ 291 (333)
.+++.+.+|..+. .++..+++ ||.. -| .++++||+++|+|+|+.... .+...+.+-..|..++
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG~nG~LVp 521 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEGVSGFILD 521 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccCCcEEEEC
Confidence 4678888886654 57887776 8753 34 57999999999999987543 3556666667898886
No 115
>PLN00142 sucrose synthase
Probab=97.17 E-value=0.083 Score=53.94 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=40.9
Q ss_pred ceeEee---cC-chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHh
Q 044441 244 GGFLSH---CG-WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVL 312 (333)
Q Consensus 244 ~~~I~h---gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl 312 (333)
++||.- -| ..+++||+++|+|+|+....+ ....+++-..|..++. -++++++++|.+++
T Consensus 668 DVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV~dG~tG~LV~P------~D~eaLA~aI~~lL 730 (815)
T PLN00142 668 GAFVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEIIVDGVSGFHIDP------YHGDEAANKIADFF 730 (815)
T ss_pred CEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeCC------CCHHHHHHHHHHHH
Confidence 347754 33 358999999999999875543 4455555567988853 36777877776654
No 116
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=97.16 E-value=0.093 Score=53.50 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=52.8
Q ss_pred CCCeEEeccc-cch---hhccc-cc-cceeEeec----CchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeec
Q 044441 223 NKGMLVQGWV-PQA---KILRH-GR-IGGFLSHC----GWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPR 292 (333)
Q Consensus 223 ~~~~~~~~~~-p~~---~ll~~-~~-~~~~I~hg----G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~ 292 (333)
..++.+.++. +.. ++..+ ++ .++||.-. -..+++||+++|+|+|+.-..+ .+..+++-..|..++.
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV~dg~tGfLVdp 693 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEIIQDGVSGFHIDP 693 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeCC
Confidence 3567766654 322 34442 22 24477542 2469999999999999875543 5555666667999853
Q ss_pred CccCCCcCHHHHHHHHHHHh
Q 044441 293 DKINQRLRREEVARVIKHVL 312 (333)
Q Consensus 293 ~~~~~~~~~~~l~~ai~~vl 312 (333)
.++++++++|.+++
T Consensus 694 ------~D~eaLA~aL~~ll 707 (784)
T TIGR02470 694 ------YHGEEAAEKIVDFF 707 (784)
T ss_pred ------CCHHHHHHHHHHHH
Confidence 47788999988876
No 117
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.82 E-value=0.004 Score=48.96 Aligned_cols=79 Identities=28% Similarity=0.345 Sum_probs=49.1
Q ss_pred CCCeEEeccccch-hhccccccceeEee--cC-chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCC
Q 044441 223 NKGMLVQGWVPQA-KILRHGRIGGFLSH--CG-WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQR 298 (333)
Q Consensus 223 ~~~~~~~~~~p~~-~ll~~~~~~~~I~h--gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~ 298 (333)
..++.+.+|++.. ++++.+++.+..+. .| .+++.|++++|+|+|+.+.. ....++..|.|..+.
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~~~~~~~~~------- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEEDGCGVLVA------- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS---SEEEE-T-------
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheeecCCeEEEC-------
Confidence 3489999998654 67888887555442 22 48999999999999998661 222333467787773
Q ss_pred cCHHHHHHHHHHHhc
Q 044441 299 LRREEVARVIKHVLL 313 (333)
Q Consensus 299 ~~~~~l~~ai~~vl~ 313 (333)
-+++++.++|+++++
T Consensus 120 ~~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 120 NDPEELAEAIERLLN 134 (135)
T ss_dssp T-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc
Confidence 389999999999886
No 118
>PHA01633 putative glycosyl transferase group 1
Probab=96.54 E-value=0.14 Score=47.20 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=61.6
Q ss_pred CCCeEEec---cccch---hhccccccceeEeec---C-chhHHHHHHhCcceecccc------ccch------hhHHHH
Q 044441 223 NKGMLVQG---WVPQA---KILRHGRIGGFLSHC---G-WGSAVEGMVFGVPIIAMPM------VYEQ------SRNAKV 280 (333)
Q Consensus 223 ~~~~~~~~---~~p~~---~ll~~~~~~~~I~hg---G-~~s~~eal~~GvP~i~~P~------~~DQ------~~na~~ 280 (333)
..++.+.+ ++++. .+++.+++ ||.-. | ..+++||+++|+|+|+--. .+++ ..+...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 45777764 44543 56776666 77542 3 4689999999999998733 2332 223332
Q ss_pred Hh--HhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Q 044441 281 VV--DIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSER 330 (333)
Q Consensus 281 ~~--~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~ 330 (333)
.. +.|.|..++ ..++++++++|.+++...+.+....++++.++.
T Consensus 278 ~~~~~~g~g~~~~------~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~ 323 (335)
T PHA01633 278 YYDKEHGQKWKIH------KFQIEDMANAIILAFELQDREERSMKLKELAKK 323 (335)
T ss_pred hcCcccCceeeec------CCCHHHHHHHHHHHHhccChhhhhHHHHHHHHh
Confidence 22 347777774 479999999999996532122334455555444
No 119
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.39 E-value=0.19 Score=42.36 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=34.9
Q ss_pred CCCeEEeccccc-h---hhccccccceeEeecC----chhHHHHHHhCcceeccccccc
Q 044441 223 NKGMLVQGWVPQ-A---KILRHGRIGGFLSHCG----WGSAVEGMVFGVPIIAMPMVYE 273 (333)
Q Consensus 223 ~~~~~~~~~~p~-~---~ll~~~~~~~~I~hgG----~~s~~eal~~GvP~i~~P~~~D 273 (333)
..|+.+.++++. . .++..+++ +|+... .+++.||+.+|+|+|+.+..+.
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 457777777632 2 23333555 877776 7899999999999999876543
No 120
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.068 Score=51.58 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=83.9
Q ss_pred CCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchh---
Q 044441 160 PWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAK--- 236 (333)
Q Consensus 160 ~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~--- 236 (333)
+.-+||+||+...+..++.+..-++-|+..+-.++|..+.+.+. +....+ .+..++..-....+++.+-.|...
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~--~~~~~l-~~la~~~Gv~~eRL~f~p~~~~~~h~a 504 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDA--EINARL-RDLAEREGVDSERLRFLPPAPNEDHRA 504 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcH--HHHHHH-HHHHHHcCCChhheeecCCCCCHHHHH
Confidence 34599999999999999999999999999999999998764221 111111 111111101345666766666543
Q ss_pred hccccccceeEe---ecCchhHHHHHHhCcceeccccccchhh--HHH-HHhHhCeeeEee
Q 044441 237 ILRHGRIGGFLS---HCGWGSAVEGMVFGVPIIAMPMVYEQSR--NAK-VVVDIGMGMDVP 291 (333)
Q Consensus 237 ll~~~~~~~~I~---hgG~~s~~eal~~GvP~i~~P~~~DQ~~--na~-~~~~~G~g~~l~ 291 (333)
-+..+++ |+. -||+.|..|+|..|||+|..+ ++|+. |+. .+..+|+-..+-
T Consensus 505 ~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA 561 (620)
T COG3914 505 RYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVA 561 (620)
T ss_pred hhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhc
Confidence 3333444 754 699999999999999999986 77775 333 344557766664
No 121
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.28 E-value=0.041 Score=53.45 Aligned_cols=127 Identities=20% Similarity=0.282 Sum_probs=82.8
Q ss_pred CCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchh---
Q 044441 160 PWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAK--- 236 (333)
Q Consensus 160 ~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~--- 236 (333)
+.-+||.+|-......++.++.-+.-|++.+-.++|....+.-.+..... ..+...-.++.+++.+-....+
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~t-----y~~~~Gl~p~riifs~va~k~eHvr 831 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRT-----YAEQLGLEPDRIIFSPVAAKEEHVR 831 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHH-----HHHHhCCCccceeeccccchHHHHH
Confidence 34499999988888999999999999999999999998876432111100 0011101455666655444322
Q ss_pred --hccccccceeEeecCchhHHHHHHhCcceeccccccchhhHH-HHHhHhCeeeEeec
Q 044441 237 --ILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNA-KVVVDIGMGMDVPR 292 (333)
Q Consensus 237 --ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na-~~~~~~G~g~~l~~ 292 (333)
.|..-.++-+.|. |+.|.++.|+.|||||.+|.-.--..-| -.+...|+|-.+-+
T Consensus 832 r~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak 889 (966)
T KOG4626|consen 832 RGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK 889 (966)
T ss_pred hhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh
Confidence 2332333336666 5889999999999999999754333333 34556699987753
No 122
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.74 E-value=0.015 Score=43.17 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=44.0
Q ss_pred hhHHHHhhcCCCCCeEEEEEecCcccC---CH--HHHHHHHHHHhcCCCcEEEEEecC
Q 044441 148 DTKIMDWLSQKEPWSVVFVSFGSEYFL---SK--DEMHEIASGLLLSEVSFIRVLRLH 200 (333)
Q Consensus 148 ~~~l~~~l~~~~~~~~v~vs~Gs~~~~---~~--~~~~~~~~~l~~~~~~~i~~~~~~ 200 (333)
...+..|+...+.||.|+||+||.... .. ..+..+++++...+..+|..+...
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 345667999999999999999998752 22 588999999999999999988754
No 123
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=95.71 E-value=0.15 Score=49.26 Aligned_cols=135 Identities=15% Similarity=0.040 Sum_probs=72.4
Q ss_pred EEEEEecCccc-CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch---hhc
Q 044441 163 VVFVSFGSEYF-LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA---KIL 238 (333)
Q Consensus 163 ~v~vs~Gs~~~-~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~---~ll 238 (333)
.+++..|.... -..+.+...+..+.+.+.++++. +..... +.+.+.+..++...++.+....++. .++
T Consensus 297 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~-G~g~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 368 (476)
T cd03791 297 PLFGFVGRLTEQKGIDLLLEALPELLELGGQLVIL-GSGDPE-------YEEALRELAARYPGRVAVLIGYDEALAHLIY 368 (476)
T ss_pred CEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEE-ecCCHH-------HHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Confidence 56666777653 22344444444444445554443 332110 0011211111124566643333332 356
Q ss_pred cccccceeEee----cCchhHHHHHHhCcceecccccc--chhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHh
Q 044441 239 RHGRIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVY--EQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVL 312 (333)
Q Consensus 239 ~~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~--DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl 312 (333)
+.+++ ++.. +-..+.+||+++|+|+|+....+ |...+.....+.|.|..++. .+++++.++|.+++
T Consensus 369 ~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~------~~~~~l~~~i~~~l 440 (476)
T cd03791 369 AGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEG------YNADALLAALRRAL 440 (476)
T ss_pred HhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCC------CCHHHHHHHHHHHH
Confidence 66665 7643 22257899999999999876543 32222211123468998852 46899999999988
Q ss_pred c
Q 044441 313 L 313 (333)
Q Consensus 313 ~ 313 (333)
.
T Consensus 441 ~ 441 (476)
T cd03791 441 A 441 (476)
T ss_pred H
Confidence 5
No 124
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.61 E-value=1.2 Score=40.72 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=40.9
Q ss_pred cchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhh----HHHHHhHhCeeeEeec
Q 044441 233 PQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSR----NAKVVVDIGMGMDVPR 292 (333)
Q Consensus 233 p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~----na~~~~~~G~g~~l~~ 292 (333)
|...+|+.++. ++||---.+.+.||+..|+|+.++|... +.. -...+++.|+-..+..
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~g~~r~~~~ 282 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEERGAVRPFTG 282 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHCCCEEECCC
Confidence 45578888885 4555555689999999999999999876 222 2334566677777653
No 125
>PRK14098 glycogen synthase; Provisional
Probab=95.13 E-value=0.41 Score=46.62 Aligned_cols=132 Identities=14% Similarity=0.047 Sum_probs=74.2
Q ss_pred EEEEEecCcccC-CHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch---hhc
Q 044441 163 VVFVSFGSEYFL-SKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA---KIL 238 (333)
Q Consensus 163 ~v~vs~Gs~~~~-~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~---~ll 238 (333)
.+++..|..... ..+.+...+..+...+..++. ++..... .-+.+.+..++.+.++.+..+++.. .++
T Consensus 308 ~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvi-vG~G~~~-------~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~ 379 (489)
T PRK14098 308 PLVGVIINFDDFQGAELLAESLEKLVELDIQLVI-CGSGDKE-------YEKRFQDFAEEHPEQVSVQTEFTDAFFHLAI 379 (489)
T ss_pred CEEEEeccccccCcHHHHHHHHHHHHhcCcEEEE-EeCCCHH-------HHHHHHHHHHHCCCCEEEEEecCHHHHHHHH
Confidence 455666766532 334444444444444555443 4432110 0012222222235678887777764 567
Q ss_pred cccccceeEeecC----chhHHHHHHhCcceecccccc--chhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHh
Q 044441 239 RHGRIGGFLSHCG----WGSAVEGMVFGVPIIAMPMVY--EQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVL 312 (333)
Q Consensus 239 ~~~~~~~~I~hgG----~~s~~eal~~GvP~i~~P~~~--DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl 312 (333)
+.+++ |+...= ..+.+||+++|+|.|+....+ |...+ ..++.+.|..+. ..+++++.++|.+++
T Consensus 380 a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~~~G~l~~------~~d~~~la~ai~~~l 449 (489)
T PRK14098 380 AGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDKGSGFIFH------DYTPEALVAKLGEAL 449 (489)
T ss_pred HhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCCCceeEeC------CCCHHHHHHHHHHHH
Confidence 76666 775432 247889999999888876543 22111 111246788885 247899999998876
No 126
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.90 E-value=2.8 Score=37.83 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=35.0
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
..|.+++.+++||+.+. ..++-+..+|--+|+|+|.+.-..
T Consensus 74 ~~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 74 YKLSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 45778889999999999 678889999999999999987553
No 127
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=94.85 E-value=0.2 Score=48.44 Aligned_cols=135 Identities=14% Similarity=0.047 Sum_probs=72.8
Q ss_pred EEEEEecCccc-CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch---hhc
Q 044441 163 VVFVSFGSEYF-LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA---KIL 238 (333)
Q Consensus 163 ~v~vs~Gs~~~-~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~---~ll 238 (333)
.+++..|.... -..+.+.+.+..+.+.+.++++. +..... +.+.+.+..++.+.++.+....+.. .++
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~-G~g~~~-------~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~ 363 (473)
T TIGR02095 292 PLFGVISRLTQQKGVDLLLAALPELLELGGQLVVL-GTGDPE-------LEEALRELAERYPGNVRVIIGYDEALAHLIY 363 (473)
T ss_pred CEEEEEecCccccChHHHHHHHHHHHHcCcEEEEE-CCCCHH-------HHHHHHHHHHHCCCcEEEEEcCCHHHHHHHH
Confidence 56666677664 23344444444444445555444 332101 1111111111134566655444543 466
Q ss_pred cccccceeEeec---Cc-hhHHHHHHhCcceecccccc--chhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHh
Q 044441 239 RHGRIGGFLSHC---GW-GSAVEGMVFGVPIIAMPMVY--EQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVL 312 (333)
Q Consensus 239 ~~~~~~~~I~hg---G~-~s~~eal~~GvP~i~~P~~~--DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl 312 (333)
+.+++ +|.-. |. .+.+||+++|+|.|+....+ |...+...-...+.|+.+. ..+++++.++|.+++
T Consensus 364 ~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~------~~d~~~la~~i~~~l 435 (473)
T TIGR02095 364 AGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFE------EYDPGALLAALSRAL 435 (473)
T ss_pred HhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeC------CCCHHHHHHHHHHHH
Confidence 76666 77532 33 48899999999999875533 2221110001227888885 247889999999988
Q ss_pred c
Q 044441 313 L 313 (333)
Q Consensus 313 ~ 313 (333)
.
T Consensus 436 ~ 436 (473)
T TIGR02095 436 R 436 (473)
T ss_pred H
Confidence 6
No 128
>PRK00654 glgA glycogen synthase; Provisional
Probab=94.83 E-value=0.56 Score=45.36 Aligned_cols=135 Identities=15% Similarity=0.097 Sum_probs=71.0
Q ss_pred EEEEEecCccc-CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEE-eccccch--hhc
Q 044441 163 VVFVSFGSEYF-LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLV-QGWVPQA--KIL 238 (333)
Q Consensus 163 ~v~vs~Gs~~~-~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~p~~--~ll 238 (333)
.+++..|.... -..+.+.+.+..+.+.+.++++. +..... +.+.+.+..++.+.++.+ .+|-... .++
T Consensus 283 ~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lviv-G~g~~~-------~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~ 354 (466)
T PRK00654 283 PLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLL-GTGDPE-------LEEAFRALAARYPGKVGVQIGYDEALAHRIY 354 (466)
T ss_pred cEEEEeeccccccChHHHHHHHHHHHhcCCEEEEE-ecCcHH-------HHHHHHHHHHHCCCcEEEEEeCCHHHHHHHH
Confidence 56666677653 22333333333333345665554 432110 001122111113344443 4553222 466
Q ss_pred cccccceeEee---cCc-hhHHHHHHhCcceecccccc--chhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHh
Q 044441 239 RHGRIGGFLSH---CGW-GSAVEGMVFGVPIIAMPMVY--EQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVL 312 (333)
Q Consensus 239 ~~~~~~~~I~h---gG~-~s~~eal~~GvP~i~~P~~~--DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl 312 (333)
+.+++ +|.- -|. .+.+||+++|+|.|+.-..+ |...+...-.+.+.|+.++. -+++++.++|.+++
T Consensus 355 ~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~------~d~~~la~~i~~~l 426 (466)
T PRK00654 355 AGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDD------FNAEDLLRALRRAL 426 (466)
T ss_pred hhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCC------CCHHHHHHHHHHHH
Confidence 76666 7653 233 48999999999999875432 32211111123378888852 47889999999887
Q ss_pred c
Q 044441 313 L 313 (333)
Q Consensus 313 ~ 313 (333)
.
T Consensus 427 ~ 427 (466)
T PRK00654 427 E 427 (466)
T ss_pred H
Confidence 5
No 129
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=94.70 E-value=0.85 Score=43.55 Aligned_cols=165 Identities=13% Similarity=0.189 Sum_probs=89.7
Q ss_pred HHHhhcCCCCCeEEEEEecCcccC------C----HHHHHHHHHHHhcCCCcEEEEEecCC----CcchhhhhcCchhHH
Q 044441 151 IMDWLSQKEPWSVVFVSFGSEYFL------S----KDEMHEIASGLLLSEVSFIRVLRLHP----DEKITIEEALPQGFA 216 (333)
Q Consensus 151 l~~~l~~~~~~~~v~vs~Gs~~~~------~----~~~~~~~~~~l~~~~~~~i~~~~~~~----~~~~~~~~~l~~~~~ 216 (333)
+..|+.....+++|.|+.-..... . .+.+.++++.+.+.|+++++...... ..+ +.. ....+.
T Consensus 224 ~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~d-D~~--~~~~l~ 300 (426)
T PRK10017 224 VQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKD-DRM--VALNLR 300 (426)
T ss_pred hhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCc-hHH--HHHHHH
Confidence 345655444456888886654311 1 13344555655556888776543210 010 000 011222
Q ss_pred HHHHhcCCCeE--Eeccccch--hhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeE-ee
Q 044441 217 EEIERNNKGML--VQGWVPQA--KILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMD-VP 291 (333)
Q Consensus 217 ~~~~~~~~~~~--~~~~~p~~--~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~-l~ 291 (333)
+++. .+.++. ...+-+.. .+++++++ +|.. =.-++.=|+..|||.+.++. |+- ....+++.|.... ++
T Consensus 301 ~~~~-~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~-RlHa~I~a~~~gvP~i~i~Y--~~K-~~~~~~~lg~~~~~~~ 373 (426)
T PRK10017 301 QHVS-DPARYHVVMDELNDLEMGKILGACEL--TVGT-RLHSAIISMNFGTPAIAINY--EHK-SAGIMQQLGLPEMAID 373 (426)
T ss_pred Hhcc-cccceeEecCCCChHHHHHHHhhCCE--EEEe-cchHHHHHHHcCCCEEEeee--hHH-HHHHHHHcCCccEEec
Confidence 2221 122222 22233333 67776654 7754 34567778899999999987 333 3334477787766 43
Q ss_pred cCccCCCcCHHHHHHHHHHHhcCc--chHHHHHHHHHHHH
Q 044441 292 RDKINQRLRREEVARVIKHVLLQE--EGKQIRRKAKEMSE 329 (333)
Q Consensus 292 ~~~~~~~~~~~~l~~ai~~vl~~~--~~~~~~~~a~~l~~ 329 (333)
.+.++.+++.+.+.+++++. -.+.+++++.++++
T Consensus 374 ----~~~l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r~ 409 (426)
T PRK10017 374 ----IRHLLDGSLQAMVADTLGQLPALNARLAEAVSRERQ 409 (426)
T ss_pred ----hhhCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 46788999999999999851 12334444444444
No 130
>PRK10125 putative glycosyl transferase; Provisional
Probab=93.97 E-value=0.81 Score=43.43 Aligned_cols=102 Identities=13% Similarity=0.108 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCCcE-EEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccc----hhhccccccceeEeec-
Q 044441 177 DEMHEIASGLLLSEVSF-IRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQ----AKILRHGRIGGFLSHC- 250 (333)
Q Consensus 177 ~~~~~~~~~l~~~~~~~-i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~----~~ll~~~~~~~~I~hg- 250 (333)
+.+..+++++...+.++ ++.+|..... ...++...++... ..+++.+++ ||.-.
T Consensus 256 Kg~~~li~A~~~l~~~~~L~ivG~g~~~------------------~~~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~ 315 (405)
T PRK10125 256 KTDQQLVREMMALGDKIELHTFGKFSPF------------------TAGNVVNHGFETDKRKLMSALNQMDA--LVFSSR 315 (405)
T ss_pred ccHHHHHHHHHhCCCCeEEEEEcCCCcc------------------cccceEEecCcCCHHHHHHHHHhCCE--EEECCc
Confidence 33466777777665443 4555532110 1224555555432 244555665 76533
Q ss_pred ---CchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHH
Q 044441 251 ---GWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIK 309 (333)
Q Consensus 251 ---G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~ 309 (333)
-.++++||+++|+|+|+....+ ....+. .+.|+.++. -+.+++++++.
T Consensus 316 ~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~-~~~G~lv~~------~d~~~La~~~~ 366 (405)
T PRK10125 316 VDNYPLILCEALSIGVPVIATHSDA----AREVLQ-KSGGKTVSE------EEVLQLAQLSK 366 (405)
T ss_pred cccCcCHHHHHHHcCCCEEEeCCCC----hHHhEe-CCcEEEECC------CCHHHHHhccC
Confidence 3468999999999999998765 222233 357888853 35666766544
No 131
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=93.74 E-value=0.51 Score=43.00 Aligned_cols=140 Identities=13% Similarity=0.142 Sum_probs=77.6
Q ss_pred HhhcCCCCCeEEEEEecCccc---CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEe
Q 044441 153 DWLSQKEPWSVVFVSFGSEYF---LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQ 229 (333)
Q Consensus 153 ~~l~~~~~~~~v~vs~Gs~~~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 229 (333)
.++....+++.|.+..|+... .+.+.+.++++.+.+.+.++++..+.+.+. + ..+.+.+.. + +..+.
T Consensus 171 ~~~~~~~~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~--~----~~~~i~~~~---~-~~~l~ 240 (319)
T TIGR02193 171 AFLGHALPAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEK--Q----RAERIAEAL---P-GAVVL 240 (319)
T ss_pred hhhhccCCCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHH--H----HHHHHHhhC---C-CCeec
Confidence 344433345566666665332 677899999999976677776554432110 0 111111111 1 11222
Q ss_pred c--cccc-hhhccccccceeEeecCchhHHHHHHhCcceecc--ccccchhhHHHHHhHhCee-eEeecCccCCCcCHHH
Q 044441 230 G--WVPQ-AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAM--PMVYEQSRNAKVVVDIGMG-MDVPRDKINQRLRREE 303 (333)
Q Consensus 230 ~--~~p~-~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~--P~~~DQ~~na~~~~~~G~g-~~l~~~~~~~~~~~~~ 303 (333)
+ -+++ ..+++++++ +|+.- .|.++=|.+.|+|.|++ |....+ ..-.|-. ..+.. +.-..+++++
T Consensus 241 g~~sL~el~ali~~a~l--~I~~D-Sgp~HlAaa~g~P~i~lfg~t~p~~------~~P~~~~~~~~~~-~~~~~I~~~~ 310 (319)
T TIGR02193 241 PKMSLAEVAALLAGADA--VVGVD-TGLTHLAAALDKPTVTLYGATDPGR------TGGYGKPNVALLG-ESGANPTPDE 310 (319)
T ss_pred CCCCHHHHHHHHHcCCE--EEeCC-ChHHHHHHHcCCCEEEEECCCCHhh------cccCCCCceEEcc-CccCCCCHHH
Confidence 2 2333 368887776 88874 67888899999999987 322211 1111111 11111 1135789999
Q ss_pred HHHHHHHHh
Q 044441 304 VARVIKHVL 312 (333)
Q Consensus 304 l~~ai~~vl 312 (333)
|.++++++|
T Consensus 311 V~~ai~~~~ 319 (319)
T TIGR02193 311 VLAALEELL 319 (319)
T ss_pred HHHHHHhhC
Confidence 999998875
No 132
>PHA01630 putative group 1 glycosyl transferase
Probab=93.70 E-value=1.2 Score=41.14 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=44.7
Q ss_pred cccch---hhccccccceeEe--e-cC-chhHHHHHHhCcceecccccc--chhhHH---HHHh-----------HhCee
Q 044441 231 WVPQA---KILRHGRIGGFLS--H-CG-WGSAVEGMVFGVPIIAMPMVY--EQSRNA---KVVV-----------DIGMG 287 (333)
Q Consensus 231 ~~p~~---~ll~~~~~~~~I~--h-gG-~~s~~eal~~GvP~i~~P~~~--DQ~~na---~~~~-----------~~G~g 287 (333)
++|.. .+++.+++ ||. + .| ..+++|||++|+|+|+.-..+ |...+. ..+. -.++|
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G 274 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVG 274 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccc
Confidence 35544 46776676 653 3 22 568999999999999986543 322221 1110 01345
Q ss_pred eEeecCccCCCcCHHHHHHHHHHHhcC
Q 044441 288 MDVPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 288 ~~l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
..+. .+.+++.+++.++|.+
T Consensus 275 ~~v~-------~~~~~~~~~ii~~l~~ 294 (331)
T PHA01630 275 YFLD-------PDIEDAYQKLLEALAN 294 (331)
T ss_pred cccC-------CCHHHHHHHHHHHHhC
Confidence 5553 2567777778788874
No 133
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.07 E-value=0.68 Score=33.57 Aligned_cols=53 Identities=21% Similarity=0.189 Sum_probs=37.7
Q ss_pred ecCchhHHHHHHhCcceeccccccchhhHHHHHhHhC-eeeEeecCccCCCcCHHHHHHHHHHHhcC
Q 044441 249 HCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIG-MGMDVPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 249 hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G-~g~~l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
+|-..-+.|++++|+|+|+-.. ...... -+.| -++..+ +.+++.++|+.++++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~-~~~~~~~~~~~--------~~~el~~~i~~ll~~ 62 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREI-FEDGEHIITYN--------DPEELAEKIEYLLEN 62 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHH-cCCCCeEEEEC--------CHHHHHHHHHHHHCC
Confidence 4556789999999999999854 222222 2224 455552 899999999999994
No 134
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=92.26 E-value=0.29 Score=48.00 Aligned_cols=74 Identities=14% Similarity=0.176 Sum_probs=56.5
Q ss_pred CCeEEecccc--ch-hhccccccceeEeec---CchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCC
Q 044441 224 KGMLVQGWVP--QA-KILRHGRIGGFLSHC---GWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQ 297 (333)
Q Consensus 224 ~~~~~~~~~p--~~-~ll~~~~~~~~I~hg---G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~ 297 (333)
..+.+.++.. +. ..+..+.+ +|.-+ |.++.+||+++|+|+| .+.....+++..=|..+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~~NG~li~------ 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHNKNGYIID------ 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcCCCcEEeC------
Confidence 4677888887 43 57776665 87765 6679999999999999 444455666666677774
Q ss_pred CcCHHHHHHHHHHHhcC
Q 044441 298 RLRREEVARVIKHVLLQ 314 (333)
Q Consensus 298 ~~~~~~l~~ai~~vl~~ 314 (333)
+..++.++|..+|.+
T Consensus 474 --d~~~l~~al~~~L~~ 488 (519)
T TIGR03713 474 --DISELLKALDYYLDN 488 (519)
T ss_pred --CHHHHHHHHHHHHhC
Confidence 789999999999985
No 135
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=90.97 E-value=3.6 Score=39.44 Aligned_cols=91 Identities=10% Similarity=0.111 Sum_probs=61.1
Q ss_pred cCCCeEEecccc-ch-hhccccccceeEeecC--chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCC
Q 044441 222 NNKGMLVQGWVP-QA-KILRHGRIGGFLSHCG--WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQ 297 (333)
Q Consensus 222 ~~~~~~~~~~~p-~~-~ll~~~~~~~~I~hgG--~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~ 297 (333)
.+..++..++.+ .. +++..+++=+-|+||+ ..++.||+.+|+|++..=.. ..+...+.+ |-.+.
T Consensus 327 y~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t---~~~~~~i~~---g~l~~------ 394 (438)
T TIGR02919 327 YDNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEET---AHNRDFIAS---ENIFE------ 394 (438)
T ss_pred cCCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecc---cCCcccccC---Cceec------
Confidence 333455566777 33 7999999877788987 47999999999999987332 222222333 55553
Q ss_pred CcCHHHHHHHHHHHhcCcchH-HHHHHHHHH
Q 044441 298 RLRREEVARVIKHVLLQEEGK-QIRRKAKEM 327 (333)
Q Consensus 298 ~~~~~~l~~ai~~vl~~~~~~-~~~~~a~~l 327 (333)
.-+.+++.++|.++|. ++ .++++..+-
T Consensus 395 ~~~~~~m~~~i~~lL~---d~~~~~~~~~~q 422 (438)
T TIGR02919 395 HNEVDQLISKLKDLLN---DPNQFRELLEQQ 422 (438)
T ss_pred CCCHHHHHHHHHHHhc---CHHHHHHHHHHH
Confidence 2368999999999998 44 455544433
No 136
>PLN02316 synthase/transferase
Probab=90.53 E-value=5.6 Score=42.18 Aligned_cols=82 Identities=7% Similarity=-0.061 Sum_probs=50.8
Q ss_pred CCeEEeccccch---hhccccccceeEeec----CchhHHHHHHhCcceecccccc--chhhHHH----HHh---HhCee
Q 044441 224 KGMLVQGWVPQA---KILRHGRIGGFLSHC----GWGSAVEGMVFGVPIIAMPMVY--EQSRNAK----VVV---DIGMG 287 (333)
Q Consensus 224 ~~~~~~~~~p~~---~ll~~~~~~~~I~hg----G~~s~~eal~~GvP~i~~P~~~--DQ~~na~----~~~---~~G~g 287 (333)
.++.+....+.. .+++.+++ ||... =..+.+|||++|+|.|+....+ |...... +.+ ..+.|
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tG 977 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNG 977 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCce
Confidence 456554444433 46665565 87542 2468999999999888765543 3322211 001 12578
Q ss_pred eEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 288 MDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 288 ~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
..+. ..+++.+..+|.+++.
T Consensus 978 flf~------~~d~~aLa~AL~raL~ 997 (1036)
T PLN02316 978 FSFD------GADAAGVDYALNRAIS 997 (1036)
T ss_pred EEeC------CCCHHHHHHHHHHHHh
Confidence 8885 3578899999999886
No 137
>PRK14099 glycogen synthase; Provisional
Probab=89.77 E-value=9.4 Score=37.20 Aligned_cols=62 Identities=8% Similarity=0.156 Sum_probs=37.3
Q ss_pred cceeEee---cC-chhHHHHHHhCcceecccccc--chhhHHHHH-h--HhCeeeEeecCccCCCcCHHHHHHHHHH
Q 044441 243 IGGFLSH---CG-WGSAVEGMVFGVPIIAMPMVY--EQSRNAKVV-V--DIGMGMDVPRDKINQRLRREEVARVIKH 310 (333)
Q Consensus 243 ~~~~I~h---gG-~~s~~eal~~GvP~i~~P~~~--DQ~~na~~~-~--~~G~g~~l~~~~~~~~~~~~~l~~ai~~ 310 (333)
+++||.- =| ..+.+||+++|+|.|+....+ |...+.... + ..+.|+.++. .+++++.++|.+
T Consensus 370 aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~------~d~~~La~ai~~ 440 (485)
T PRK14099 370 ADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP------VTADALAAALRK 440 (485)
T ss_pred CCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC------CCHHHHHHHHHH
Confidence 3447753 33 357899999997766654432 322222111 1 1157888852 478999999987
No 138
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=89.62 E-value=17 Score=33.55 Aligned_cols=277 Identities=16% Similarity=0.115 Sum_probs=126.9
Q ss_pred HHHHHhhcCCCEEEEcC-CchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCcccccccccccCC
Q 044441 8 FCNILETLKPTLVMYDL-FQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINRFMHP 86 (333)
Q Consensus 8 l~~~l~~~~pD~vv~D~-~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 86 (333)
+++++| +.||+.|=.+ +.+.-..+++..++|.+++...+............++.+++- .+..+.+
T Consensus 143 ~Eai~r-~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l---------~~~KlaY---- 208 (465)
T KOG1387|consen 143 FEAIIR-FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQRQKSGIL---------VWGKLAY---- 208 (465)
T ss_pred HHHHHh-CCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHhhhhcchh---------hhHHHHH----
Confidence 334443 6899887553 333344556677999999876665443322211100111100 0000000
Q ss_pred CCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCC-eeecC-cCcCCCCCCCChhHHHHhhcCCCCCeEE
Q 044441 87 TANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENE-IVPVG-PLVQESIFKEDDTKIMDWLSQKEPWSVV 164 (333)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~-~~~vG-pl~~~~~~~~~~~~l~~~l~~~~~~~~v 164 (333)
.+.+..+.+.....++.+++||...=. . +...|..+ ...|= |+- .+++..--...+++-..
T Consensus 209 ----~rlFa~lY~~~G~~ad~vm~NssWT~n-H----I~qiW~~~~~~iVyPPC~--------~e~lks~~~te~~r~~~ 271 (465)
T KOG1387|consen 209 ----WRLFALLYQSAGSKADIVMTNSSWTNN-H----IKQIWQSNTCSIVYPPCS--------TEDLKSKFGTEGERENQ 271 (465)
T ss_pred ----HHHHHHHHHhccccceEEEecchhhHH-H----HHHHhhccceeEEcCCCC--------HHHHHHHhcccCCcceE
Confidence 123555666555558899999865211 1 22223221 11111 221 22444433333445577
Q ss_pred EEEecCcccCC-HHHHHHHHHHHhcCC-----CcE-EEEEecCCCcchhh-hhcCchhHHHHHHhcCCCeEEeccccch-
Q 044441 165 FVSFGSEYFLS-KDEMHEIASGLLLSE-----VSF-IRVLRLHPDEKITI-EEALPQGFAEEIERNNKGMLVQGWVPQA- 235 (333)
Q Consensus 165 ~vs~Gs~~~~~-~~~~~~~~~~l~~~~-----~~~-i~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~p~~- 235 (333)
.++.|..-.-. .+.++..+--+.+.+ .++ +..+++..++++.. ...| +++.+.+ +.+.++.+..-+|..
T Consensus 272 ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~L-kd~a~~L-~i~~~v~F~~N~Py~~ 349 (465)
T KOG1387|consen 272 LLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSL-KDLAEEL-KIPKHVQFEKNVPYEK 349 (465)
T ss_pred EEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHH-HHHHHhc-CCccceEEEecCCHHH
Confidence 77777654311 122333222222221 222 34444433222111 1112 2222222 135677777777776
Q ss_pred --hhccccccceeEeecCch-----hHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCc---cCCCcCHHHHH
Q 044441 236 --KILRHGRIGGFLSHCGWG-----SAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDK---INQRLRREEVA 305 (333)
Q Consensus 236 --~ll~~~~~~~~I~hgG~~-----s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~---~~~~~~~~~l~ 305 (333)
.+|+.+.+ -| |+=|| ++.|.|++|.=+|+---.+-- +-++.+.+. +.-..|.++-+
T Consensus 350 lv~lL~~a~i--Gv-h~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~-----------lDIV~~~~G~~tGFla~t~~EYa 415 (465)
T KOG1387|consen 350 LVELLGKATI--GV-HTMWNEHFGISVVEYMAAGLIPIVHNSGGPL-----------LDIVTPWDGETTGFLAPTDEEYA 415 (465)
T ss_pred HHHHhcccee--eh-hhhhhhhcchhHHHHHhcCceEEEeCCCCCc-----------eeeeeccCCccceeecCChHHHH
Confidence 45665544 22 33233 789999999755543111100 111111100 01124677788
Q ss_pred HHHHHHhcC--cchHHHHHHHHHHHHHh
Q 044441 306 RVIKHVLLQ--EEGKQIRRKAKEMSERM 331 (333)
Q Consensus 306 ~ai~~vl~~--~~~~~~~~~a~~l~~~~ 331 (333)
++|.+++.. ++...+|++|++-.+++
T Consensus 416 E~iLkIv~~~~~~r~~~r~~AR~s~~RF 443 (465)
T KOG1387|consen 416 EAILKIVKLNYDERNMMRRNARKSLARF 443 (465)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 888888762 32446777777665554
No 139
>PLN02939 transferase, transferring glycosyl groups
Probab=88.97 E-value=5 Score=42.01 Aligned_cols=83 Identities=11% Similarity=0.102 Sum_probs=53.6
Q ss_pred CCCeEEeccccch---hhccccccceeEeec----CchhHHHHHHhCcceecccccc--chhhH--HHHH-hHhCeeeEe
Q 044441 223 NKGMLVQGWVPQA---KILRHGRIGGFLSHC----GWGSAVEGMVFGVPIIAMPMVY--EQSRN--AKVV-VDIGMGMDV 290 (333)
Q Consensus 223 ~~~~~~~~~~p~~---~ll~~~~~~~~I~hg----G~~s~~eal~~GvP~i~~P~~~--DQ~~n--a~~~-~~~G~g~~l 290 (333)
..+|.+..+.+.. .+++.+++ ||.-. -..+.+||+++|+|.|+....+ |...+ ...+ ++-+.|..+
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 3568777777664 46776666 87542 2458999999999999876644 32211 1111 223578777
Q ss_pred ecCccCCCcCHHHHHHHHHHHhc
Q 044441 291 PRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 291 ~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
. ..+++++.++|.+++.
T Consensus 914 ~------~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 L------TPDEQGLNSALERAFN 930 (977)
T ss_pred c------CCCHHHHHHHHHHHHH
Confidence 4 2478888888888764
No 140
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=88.27 E-value=5.4 Score=32.11 Aligned_cols=138 Identities=17% Similarity=0.232 Sum_probs=70.0
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhcccc
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHG 241 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~ 241 (333)
|.|.|-+||.. +....+++...|++.|..+-..+... +..|+.+.+ |+... .+.
T Consensus 1 p~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa--------HR~p~~l~~-------------~~~~~---~~~ 54 (150)
T PF00731_consen 1 PKVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA--------HRTPERLLE-------------FVKEY---EAR 54 (150)
T ss_dssp -EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T--------TTSHHHHHH-------------HHHHT---TTT
T ss_pred CeEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec--------cCCHHHHHH-------------HHHHh---ccC
Confidence 35666667654 57888999999999886664443322 223333221 22221 112
Q ss_pred ccceeEeecCch----hHHHHHHhCcceeccccccchhhHHH---HHhHh--CeeeEeecCccCCCcCHHHHHHHHHHHh
Q 044441 242 RIGGFLSHCGWG----SAVEGMVFGVPIIAMPMVYEQSRNAK---VVVDI--GMGMDVPRDKINQRLRREEVARVIKHVL 312 (333)
Q Consensus 242 ~~~~~I~hgG~~----s~~eal~~GvP~i~~P~~~DQ~~na~---~~~~~--G~g~~l~~~~~~~~~~~~~l~~ai~~vl 312 (333)
.+++||+=+|.. ++.-++ .-.|+|.+|....+..... .+.+. |+++..-.= ++..++.-+.. ++|
T Consensus 55 ~~~viIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i--~~~~nAA~~A~---~IL 128 (150)
T PF00731_consen 55 GADVIIAVAGMSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI--NNGFNAALLAA---RIL 128 (150)
T ss_dssp TESEEEEEEESS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS--THHHHHHHHHH---HHH
T ss_pred CCEEEEEECCCcccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc--cCchHHHHHHH---HHH
Confidence 334588887754 333333 3789999999877554333 22332 555444210 11223333333 444
Q ss_pred cCcchHHHHHHHHHHHHHhh
Q 044441 313 LQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 313 ~~~~~~~~~~~a~~l~~~~~ 332 (333)
.-. +++++++.+..++.++
T Consensus 129 a~~-d~~l~~kl~~~~~~~~ 147 (150)
T PF00731_consen 129 ALK-DPELREKLRAYREKMK 147 (150)
T ss_dssp HTT--HHHHHHHHHHHHHHH
T ss_pred hcC-CHHHHHHHHHHHHHHH
Confidence 310 5788888888877765
No 141
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=86.22 E-value=1.3 Score=36.41 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=30.2
Q ss_pred chHHHHHHHhhcCCCEEEEcCCchhHHHHH----HH-c-CCCeEEEechh
Q 044441 4 AKPAFCNILETLKPTLVMYDLFQPWAAEAA----YQ-Y-HIAAVLFLTIS 47 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv~D~~~~~~~~~A----~~-l-giP~v~~~~~~ 47 (333)
+.+.+.++|++.+||+||+-..++.+..++ +. + ++|.+++.+.+
T Consensus 77 ~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~ 126 (169)
T PF06925_consen 77 FARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDF 126 (169)
T ss_pred HHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCC
Confidence 456788999999999999996644443122 22 4 58888776654
No 142
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=85.11 E-value=21 Score=34.45 Aligned_cols=69 Identities=20% Similarity=0.161 Sum_probs=45.7
Q ss_pred eccccch---hhccccccceeEe---ecCc-hhHHHHHHhCcc----eecccccc--chhhHHHHHhHhCeeeEeecCcc
Q 044441 229 QGWVPQA---KILRHGRIGGFLS---HCGW-GSAVEGMVFGVP----IIAMPMVY--EQSRNAKVVVDIGMGMDVPRDKI 295 (333)
Q Consensus 229 ~~~~p~~---~ll~~~~~~~~I~---hgG~-~s~~eal~~GvP----~i~~P~~~--DQ~~na~~~~~~G~g~~l~~~~~ 295 (333)
.+++++. .+++.+++ ||. +-|. .+++||+++|+| +|+--..+ ++ ..-|+.+.
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---------~~~g~lv~---- 410 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---------LSGALLVN---- 410 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccchhh---------cCCCEEEC----
Confidence 3566665 45776676 663 3344 578999999999 54443322 22 23467774
Q ss_pred CCCcCHHHHHHHHHHHhcC
Q 044441 296 NQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 296 ~~~~~~~~l~~ai~~vl~~ 314 (333)
..+.++++++|.+++++
T Consensus 411 --p~d~~~la~ai~~~l~~ 427 (460)
T cd03788 411 --PYDIDEVADAIHRALTM 427 (460)
T ss_pred --CCCHHHHHHHHHHHHcC
Confidence 25789999999999984
No 143
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=84.56 E-value=28 Score=32.18 Aligned_cols=139 Identities=12% Similarity=0.148 Sum_probs=83.2
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhc---CCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEE-eccccch---
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLL---SEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLV-QGWVPQA--- 235 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~---~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~p~~--- 235 (333)
.+.|-.|..+..++.+++.+ +++.+ .+.+++.-.+-+.+. .+=...+- ...++. =...++.+ .+++|..
T Consensus 185 ~ltILvGNSgd~sNnHieaL-~~L~~~~~~~~kIivPLsYg~~n-~~Yi~~V~-~~~~~l-F~~~~~~iL~e~mpf~eYl 260 (360)
T PF07429_consen 185 KLTILVGNSGDPSNNHIEAL-EALKQQFGDDVKIIVPLSYGANN-QAYIQQVI-QAGKEL-FGAENFQILTEFMPFDEYL 260 (360)
T ss_pred ceEEEEcCCCCCCccHHHHH-HHHHHhcCCCeEEEEECCCCCch-HHHHHHHH-HHHHHh-cCccceeEhhhhCCHHHHH
Confidence 56666788777666665544 33332 345555555533211 00000010 011111 02346654 5688865
Q ss_pred hhccccccceeEee--cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 236 KILRHGRIGGFLSH--CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 236 ~ll~~~~~~~~I~h--gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
.+|+.++++.|.+. =|.|+++-.++.|+|+++- .+..--..+.+.|+-+.-. .+.++...|+++=+++..
T Consensus 261 ~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~~~ipVlf~----~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 261 ALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKEQGIPVLFY----GDELDEALVREAQRQLAN 332 (360)
T ss_pred HHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHhCCCeEEec----cccCCHHHHHHHHHHHhh
Confidence 68888888766654 5789999999999999875 2333334456667777664 478999999999888875
No 144
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=83.85 E-value=6.6 Score=34.93 Aligned_cols=96 Identities=15% Similarity=0.234 Sum_probs=57.7
Q ss_pred CeEEEEEecCccc---CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeE-Eecc--ccc
Q 044441 161 WSVVFVSFGSEYF---LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGML-VQGW--VPQ 234 (333)
Q Consensus 161 ~~~v~vs~Gs~~~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~--~p~ 234 (333)
++.|.+..|+... .+.+.+.++++.+.+.++++++..+... . +.. +.+.+.. ...++. +.+- +.+
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e-~--~~~----~~i~~~~--~~~~~~~~~~~~~l~e 191 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAE-R--ELA----EEIAAAL--GGPRVVNLAGKTSLRE 191 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhh-H--HHH----HHHHHhc--CCCccccCcCCCCHHH
Confidence 4578888877643 6678999999999877888776543221 1 000 1111111 011221 1221 122
Q ss_pred -hhhccccccceeEeecCchhHHHHHHhCcceecc
Q 044441 235 -AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAM 268 (333)
Q Consensus 235 -~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~ 268 (333)
..++.++++ +|+.-. |.++=|.+.|+|+|++
T Consensus 192 ~~~li~~~~l--~I~~Ds-g~~HlA~a~~~p~i~l 223 (279)
T cd03789 192 LAALLARADL--VVTNDS-GPMHLAAALGTPTVAL 223 (279)
T ss_pred HHHHHHhCCE--EEeeCC-HHHHHHHHcCCCEEEE
Confidence 367887776 999854 7788888999999988
No 145
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=82.32 E-value=8.9 Score=37.04 Aligned_cols=85 Identities=14% Similarity=0.090 Sum_probs=53.1
Q ss_pred ccccch---hhccccccceeEe---ecCc-hhHHHHHHhCcc----eeccccccchhhHHHHHhHhCeeeEeecCccCCC
Q 044441 230 GWVPQA---KILRHGRIGGFLS---HCGW-GSAVEGMVFGVP----IIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQR 298 (333)
Q Consensus 230 ~~~p~~---~ll~~~~~~~~I~---hgG~-~s~~eal~~GvP----~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~ 298 (333)
+.+++. ++++.+++ ||. +-|. .++.||+++|+| +|+--+.+-. ..+ +-|+.+.+
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~~l---~~gllVnP------ 406 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----QEL---NGALLVNP------ 406 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----HHh---CCcEEECC------
Confidence 445555 45666665 775 3354 588899999999 6665544321 222 24777753
Q ss_pred cCHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Q 044441 299 LRREEVARVIKHVLLQEEGKQIRRKAKEMSER 330 (333)
Q Consensus 299 ~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~ 330 (333)
.+.++++++|.++|+.. .++.+++.+++.+.
T Consensus 407 ~d~~~lA~aI~~aL~~~-~~er~~r~~~~~~~ 437 (456)
T TIGR02400 407 YDIDGMADAIARALTMP-LEEREERHRAMMDK 437 (456)
T ss_pred CCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Confidence 58999999999999732 23444444444443
No 146
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=81.83 E-value=11 Score=34.70 Aligned_cols=99 Identities=15% Similarity=0.305 Sum_probs=59.5
Q ss_pred CCeEEEEEecCccc---CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeE-Eec--ccc
Q 044441 160 PWSVVFVSFGSEYF---LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGML-VQG--WVP 233 (333)
Q Consensus 160 ~~~~v~vs~Gs~~~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~--~~p 233 (333)
.++.|.+..|+... .+.+.+.++++.|...+.++++.-+ +...+.+.. +.+.++. ...+++ ..+ -+.
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~-p~~~e~~~~----~~i~~~~--~~~~~~~l~g~~sL~ 252 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSG-PDKDELAMV----NEIAQGC--QTPRVTSLAGKLTLP 252 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecC-CCHHHHHHH----HHHHhhC--CCCcccccCCCCCHH
Confidence 34577788777543 5688999999998776777665533 211110000 1111111 111221 122 123
Q ss_pred c-hhhccccccceeEeecCchhHHHHHHhCcceecc
Q 044441 234 Q-AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAM 268 (333)
Q Consensus 234 ~-~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~ 268 (333)
+ ..+++++++ +|+. ..|.++=|.+.|+|.|.+
T Consensus 253 el~ali~~a~l--~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 253 QLAALIDHARL--FIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred HHHHHHHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 3 368887777 9998 678999999999999987
No 147
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=80.81 E-value=7.1 Score=38.62 Aligned_cols=94 Identities=11% Similarity=0.091 Sum_probs=51.6
Q ss_pred hhhccccccceeEe---ecC-chhHHHHHHhCcceecccccc-chhhHHHHHhHh-CeeeEeec-CccCCCcCHHHHHHH
Q 044441 235 AKILRHGRIGGFLS---HCG-WGSAVEGMVFGVPIIAMPMVY-EQSRNAKVVVDI-GMGMDVPR-DKINQRLRREEVARV 307 (333)
Q Consensus 235 ~~ll~~~~~~~~I~---hgG-~~s~~eal~~GvP~i~~P~~~-DQ~~na~~~~~~-G~g~~l~~-~~~~~~~~~~~l~~a 307 (333)
.+++..+++ +|. +=| ..+++||+++|+|+|+....+ ..+.. ..+.+. ..|+.+.. ....-.-+.++++++
T Consensus 469 ~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~ 545 (590)
T cd03793 469 EEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLTQY 545 (590)
T ss_pred HHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHHHH
Confidence 355665555 665 334 458999999999999987643 23322 122222 25666642 110112356788888
Q ss_pred HHHHhcCcchHHHH--HHHHHHHHHh
Q 044441 308 IKHVLLQEEGKQIR--RKAKEMSERM 331 (333)
Q Consensus 308 i~~vl~~~~~~~~~--~~a~~l~~~~ 331 (333)
+.+++.....+.+. .+++++++.+
T Consensus 546 m~~~~~~~~r~~~~~r~~~~r~s~~f 571 (590)
T cd03793 546 MYEFCQLSRRQRIIQRNRTERLSDLL 571 (590)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHhC
Confidence 88888632222222 2334555543
No 148
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=79.72 E-value=12 Score=33.12 Aligned_cols=41 Identities=15% Similarity=0.320 Sum_probs=32.0
Q ss_pred eEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccc
Q 044441 226 MLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMP 269 (333)
Q Consensus 226 ~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P 269 (333)
+.+..-.+-.+++.+++. +||-.+ ++-+||+.+|+|++++.
T Consensus 185 ~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFG 225 (269)
T ss_pred EEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEec
Confidence 334455666789998887 888764 58899999999999984
No 149
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=79.40 E-value=50 Score=30.10 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=78.1
Q ss_pred EEEEEecCcccCCHHHHHHHHHHH-hcCC--CcEEEEEecCCCcchhhhhcCchhHHHHHHhcC-CCeE-Eeccccch--
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGL-LLSE--VSFIRVLRLHPDEKITIEEALPQGFAEEIERNN-KGML-VQGWVPQA-- 235 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l-~~~~--~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~-~~~~~p~~-- 235 (333)
.+-|-.|..+..++.+++.+ +++ +..+ .+++.-.+-+.++..=... + .....++ -+ +++. ..+++|..
T Consensus 146 ~~tIlvGNSgd~SN~Hie~L-~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~-V-~~~~~~l--F~~~~~~~L~e~l~f~eY 220 (322)
T PRK02797 146 KMTILVGNSGDRSNRHIEAL-RALHQQFGDNVKIIVPMGYPANNQAYIEE-V-RQAGLAL--FGAENFQILTEKLPFDDY 220 (322)
T ss_pred ceEEEEeCCCCCcccHHHHH-HHHHHHhCCCeEEEEECCcCCCCHHHHHH-H-HHHHHHh--cCcccEEehhhhCCHHHH
Confidence 45566687776666666544 444 3334 4556555543233110000 0 0001111 22 4544 34567654
Q ss_pred -hhccccccceeEee--cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHh
Q 044441 236 -KILRHGRIGGFLSH--CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVL 312 (333)
Q Consensus 236 -~ll~~~~~~~~I~h--gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl 312 (333)
.+|+..+++.|+++ =|.|+++-.++.|+|+++--. -+.+.. +.+.|+-+..+ .+.++...+.++=+++.
T Consensus 221 l~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~---n~fwqd-l~e~gv~Vlf~----~d~L~~~~v~e~~rql~ 292 (322)
T PRK02797 221 LALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRD---NPFWQD-LTEQGLPVLFT----GDDLDEDIVREAQRQLA 292 (322)
T ss_pred HHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecC---CchHHH-HHhCCCeEEec----CCcccHHHHHHHHHHHH
Confidence 78999998877775 478999999999999998632 122222 45557766555 46678888877655544
No 150
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.43 E-value=3.3 Score=37.28 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=44.2
Q ss_pred chhhccccccceeEeecCchhHHHHHHhCcceeccccccchhh--HHHHHhHh-CeeeEeecCccCCCcCHHHHHHHHHH
Q 044441 234 QAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSR--NAKVVVDI-GMGMDVPRDKINQRLRREEVARVIKH 310 (333)
Q Consensus 234 ~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~--na~~~~~~-G~g~~l~~~~~~~~~~~~~l~~ai~~ 310 (333)
..++|.++++ .|--.| ..+-+++-.|||+|.+|-.+-|+. -|++-.++ |..+.+-+ ..++.+..+.+
T Consensus 305 fadiLH~ada--algmAG-TAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-------~~aq~a~~~~q 374 (412)
T COG4370 305 FADILHAADA--ALGMAG-TATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-------PEAQAAAQAVQ 374 (412)
T ss_pred HHHHHHHHHH--HHHhcc-chHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-------CchhhHHHHHH
Confidence 3456666655 443333 223446789999999999999986 45555665 88888853 23333333333
Q ss_pred -HhcC
Q 044441 311 -VLLQ 314 (333)
Q Consensus 311 -vl~~ 314 (333)
++.|
T Consensus 375 ~ll~d 379 (412)
T COG4370 375 ELLGD 379 (412)
T ss_pred HHhcC
Confidence 7773
No 151
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=77.06 E-value=50 Score=28.86 Aligned_cols=80 Identities=30% Similarity=0.466 Sum_probs=50.4
Q ss_pred CCCeEEeccccc---hhhccccccceeEee---cCch-hHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCcc
Q 044441 223 NKGMLVQGWVPQ---AKILRHGRIGGFLSH---CGWG-SAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKI 295 (333)
Q Consensus 223 ~~~~~~~~~~p~---~~ll~~~~~~~~I~h---gG~~-s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~ 295 (333)
..++.+.++++. ..++..+++ ++.. .|.| ++.||+++|+|+|..... .....+.+.+.|..+.
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~~~~g~~~~---- 325 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVEDGETGLLVP---- 325 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcCCCceEecC----
Confidence 357777888883 245665555 6655 2443 469999999999776443 2223333332466332
Q ss_pred CCCcCHHHHHHHHHHHhcC
Q 044441 296 NQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 296 ~~~~~~~~l~~ai~~vl~~ 314 (333)
. ...+++..++..++++
T Consensus 326 -~-~~~~~~~~~i~~~~~~ 342 (381)
T COG0438 326 -P-GDVEELADALEQLLED 342 (381)
T ss_pred -C-CCHHHHHHHHHHHhcC
Confidence 1 2688999999999873
No 152
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=76.95 E-value=20 Score=33.14 Aligned_cols=98 Identities=12% Similarity=0.214 Sum_probs=59.1
Q ss_pred CeEEEEEecCccc---CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCC-eEEecc--ccc
Q 044441 161 WSVVFVSFGSEYF---LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKG-MLVQGW--VPQ 234 (333)
Q Consensus 161 ~~~v~vs~Gs~~~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~--~p~ 234 (333)
++.|.+..|+... .+.+.+.++++.|.+.+.++++..+....+ .... +.+.+.. ...+ +...+- +.+
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e-~~~~----~~i~~~~--~~~~~~~l~g~~sL~e 255 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDD-LACV----NEIAQGC--QTPPVTALAGKTTFPE 255 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHH-HHHH----HHHHHhc--CCCccccccCCCCHHH
Confidence 4578888887543 678899999999977788776654322111 1100 1111111 1111 212222 233
Q ss_pred -hhhccccccceeEeecCchhHHHHHHhCcceecc
Q 044441 235 -AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAM 268 (333)
Q Consensus 235 -~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~ 268 (333)
..+++++++ ||+.- .|-++=|.+.|+|.|++
T Consensus 256 l~ali~~a~l--~v~nD-SGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 256 LGALIDHAQL--FIGVD-SAPAHIAAAVNTPLICL 287 (352)
T ss_pred HHHHHHhCCE--EEecC-CHHHHHHHHcCCCEEEE
Confidence 368887777 99875 67888899999999987
No 153
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=74.31 E-value=44 Score=34.85 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=43.0
Q ss_pred hhccccccceeEee---cCch-hHHHHHHhCcc---eeccc-cccchhhHHHHHhHhC-eeeEeecCccCCCcCHHHHHH
Q 044441 236 KILRHGRIGGFLSH---CGWG-SAVEGMVFGVP---IIAMP-MVYEQSRNAKVVVDIG-MGMDVPRDKINQRLRREEVAR 306 (333)
Q Consensus 236 ~ll~~~~~~~~I~h---gG~~-s~~eal~~GvP---~i~~P-~~~DQ~~na~~~~~~G-~g~~l~~~~~~~~~~~~~l~~ 306 (333)
.+++.+++ ||.- -|+| ++.|++++|+| ++++. +.+ .+.. .| .|+.+.+ .+.+++++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G----~~~~---l~~~allVnP------~D~~~lA~ 435 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG----AGQS---LGAGALLVNP------WNITEVSS 435 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcC----chhh---hcCCeEEECC------CCHHHHHH
Confidence 56776666 7654 3665 77899999999 34443 332 1111 23 5788853 58999999
Q ss_pred HHHHHhc
Q 044441 307 VIKHVLL 313 (333)
Q Consensus 307 ai~~vl~ 313 (333)
+|.++|+
T Consensus 436 AI~~aL~ 442 (797)
T PLN03063 436 AIKEALN 442 (797)
T ss_pred HHHHHHh
Confidence 9999998
No 154
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=74.01 E-value=1.1 Score=35.19 Aligned_cols=34 Identities=18% Similarity=-0.024 Sum_probs=27.4
Q ss_pred CCCEEEEcCCchhHHHHHHHcCCCeEEEechhHH
Q 044441 16 KPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAV 49 (333)
Q Consensus 16 ~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 49 (333)
.+|+++++.....+..+|+++|||++.....+..
T Consensus 100 ~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 100 ADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp ECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred cchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 4778888888888999999999999998766543
No 155
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=73.84 E-value=6.2 Score=34.91 Aligned_cols=41 Identities=12% Similarity=-0.011 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCCEEEEcC------CchhHHHHHHHcCCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDL------FQPWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~------~~~~~~~~A~~lgiP~v~~~~~ 46 (333)
..|.+.+++..||+|++-. ...-+..+|+.||+|++++...
T Consensus 102 ~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 102 SALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 4466677777899999752 2346889999999999997765
No 156
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=73.19 E-value=68 Score=28.56 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=29.2
Q ss_pred ccccchhhccccccceeEeecC-chhHHHHHHhCcceecc
Q 044441 230 GWVPQAKILRHGRIGGFLSHCG-WGSAVEGMVFGVPIIAM 268 (333)
Q Consensus 230 ~~~p~~~ll~~~~~~~~I~hgG-~~s~~eal~~GvP~i~~ 268 (333)
++=|..++|+.++. +|.-.. .|...||.+.|+|+-++
T Consensus 234 g~NPY~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY--IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce--EEEecchhhhhHHHhccCCCeEEE
Confidence 45588899998776 666555 57889999999998776
No 157
>PRK12342 hypothetical protein; Provisional
Probab=71.80 E-value=6.7 Score=34.64 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=31.7
Q ss_pred HHHHHHHhhcCCCEEEEcC------CchhHHHHHHHcCCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDL------FQPWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~------~~~~~~~~A~~lgiP~v~~~~~ 46 (333)
..|.+.+++..||+|++-. ...-+..+|+.||+|+++....
T Consensus 99 ~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 99 KALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 4566677777899999752 2344889999999999997755
No 158
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=70.96 E-value=22 Score=32.36 Aligned_cols=132 Identities=15% Similarity=0.059 Sum_probs=73.4
Q ss_pred CeEEEEEecC-ccc--CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEec--cccc-
Q 044441 161 WSVVFVSFGS-EYF--LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQG--WVPQ- 234 (333)
Q Consensus 161 ~~~v~vs~Gs-~~~--~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~p~- 234 (333)
++.|.+..|+ ... .+.+.+.++++.+.+.|.++++..+.+. + .+.. +.+.+ ...++.+.+ -+.+
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~-e-~~~~----~~i~~----~~~~~~l~g~~sL~el 247 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEH-E-EQRA----KRLAE----GFPYVEVLPKLSLEQV 247 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHH-H-HHHH----HHHHc----cCCcceecCCCCHHHH
Confidence 3455444444 332 6788999999999777777665434321 1 1111 11111 112232222 2333
Q ss_pred hhhccccccceeEeecCchhHHHHHHhCcceecc--ccccchh----hHHHHHhHhCeeeEeecCccCCCcCHHHHHHHH
Q 044441 235 AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAM--PMVYEQS----RNAKVVVDIGMGMDVPRDKINQRLRREEVARVI 308 (333)
Q Consensus 235 ~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~--P~~~DQ~----~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai 308 (333)
..++.++++ +|+.- .|.++=|.+.|+|+|++ |.....+ .|...+..- +.. -..+++|++.+++
T Consensus 248 aali~~a~l--~I~nD-SGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~~--~~c------m~~I~~e~V~~~~ 316 (322)
T PRK10964 248 ARVLAGAKA--VVSVD-TGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRSP--GKS------MADLSAETVFQKL 316 (322)
T ss_pred HHHHHhCCE--EEecC-CcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeecCC--Ccc------cccCCHHHHHHHH
Confidence 368887777 88875 68899999999999998 4322111 111111000 011 2468999999999
Q ss_pred HHHhc
Q 044441 309 KHVLL 313 (333)
Q Consensus 309 ~~vl~ 313 (333)
+++|.
T Consensus 317 ~~~l~ 321 (322)
T PRK10964 317 ETLIS 321 (322)
T ss_pred HHHhh
Confidence 88874
No 159
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=70.96 E-value=14 Score=30.02 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=51.8
Q ss_pred hhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeE
Q 044441 148 DTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGML 227 (333)
Q Consensus 148 ~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 227 (333)
-.++-++|.+.. ...++.|.. .....+.++..+.+-.++=++..... .+.. .....+
T Consensus 20 A~~lg~~La~~g---~~lv~Gg~~-----GlM~a~a~ga~~~gg~viGVlp~~l~--------~~~~-------~~~~~i 76 (159)
T TIGR00725 20 AYRLGKELAKKG---HILINGGRT-----GVMEAVSKGAREAGGLVVGILPDEDF--------AGNP-------YLTIKV 76 (159)
T ss_pred HHHHHHHHHHCC---CEEEcCCch-----hHHHHHHHHHHHCCCeEEEECChhhc--------cCCC-------CceEEE
Confidence 345666776643 455664433 46667777766666555544432110 0000 011112
Q ss_pred Eecc-ccchh-hccccccceeEeecCchhHHH---HHHhCcceecccc
Q 044441 228 VQGW-VPQAK-ILRHGRIGGFLSHCGWGSAVE---GMVFGVPIIAMPM 270 (333)
Q Consensus 228 ~~~~-~p~~~-ll~~~~~~~~I~hgG~~s~~e---al~~GvP~i~~P~ 270 (333)
..++ .+-.. +...++ ..++--||.||+.| ++.+++|+++++.
T Consensus 77 ~~~~~~~Rk~~m~~~sd-a~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 77 KTGMNFARNFILVRSAD-VVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred ECCCcchHHHHHHHHCC-EEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 2232 22333 344444 34556688888765 5789999999875
No 160
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=70.85 E-value=54 Score=26.44 Aligned_cols=138 Identities=20% Similarity=0.227 Sum_probs=75.9
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCCCcEE-EEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhcccc
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSEVSFI-RVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHG 241 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~ 241 (333)
.|-|-+||.. +.+.++..++.|++.|+.+- ++++.+ .-|+.+.+ |... ....
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSAH---------RTPe~m~~-------------ya~~---a~~~ 56 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSAH---------RTPEKMFE-------------YAEE---AEER 56 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEecc---------CCHHHHHH-------------HHHH---HHHC
Confidence 5778889875 56788888999999998774 444432 23332111 1111 1222
Q ss_pred ccceeEeecCch----hHHHHHHhCcceecccccc---chhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcC
Q 044441 242 RIGGFLSHCGWG----SAVEGMVFGVPIIAMPMVY---EQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 242 ~~~~~I~hgG~~----s~~eal~~GvP~i~~P~~~---DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
.++++|.-.|.- .+. |...-+|+|++|... +-.+....+.+.-.|+-+..-...+..++.-++..|-.+-
T Consensus 57 g~~viIAgAGgAAHLPGmv-Aa~T~lPViGVPv~s~~L~GlDSL~SiVQMP~GvPVaTvaIg~a~NAallAa~ILa~~-- 133 (162)
T COG0041 57 GVKVIIAGAGGAAHLPGMV-AAKTPLPVIGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGNAANAALLAAQILAIK-- 133 (162)
T ss_pred CCeEEEecCcchhhcchhh-hhcCCCCeEeccCccccccchHHHHHHhcCCCCCeeEEEeecchhhHHHHHHHHHcCC--
Confidence 444466655532 222 233478999999874 3334555667764444322100012344444544442222
Q ss_pred cchHHHHHHHHHHHHHhh
Q 044441 315 EEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 315 ~~~~~~~~~a~~l~~~~~ 332 (333)
++.++++..++++.++
T Consensus 134 --d~~l~~kl~~~r~~~~ 149 (162)
T COG0041 134 --DPELAEKLAEFREAQT 149 (162)
T ss_pred --CHHHHHHHHHHHHHHH
Confidence 5788888888877664
No 161
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=70.61 E-value=25 Score=32.09 Aligned_cols=96 Identities=10% Similarity=0.164 Sum_probs=58.2
Q ss_pred CCeEEEEEecCcc-c---CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeE-Eec--cc
Q 044441 160 PWSVVFVSFGSEY-F---LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGML-VQG--WV 232 (333)
Q Consensus 160 ~~~~v~vs~Gs~~-~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~--~~ 232 (333)
.++.|.+..|+.. . .+.+.+.++++.+.+.+.+++.. +.+.+. +.. +.+.+. .+.+++ ..+ -+
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~-G~~~e~--~~~----~~i~~~---~~~~~~~l~g~~sL 242 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLF-GSAKDH--PAG----NEIEAL---LPGELRNLAGETSL 242 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEE-EChhhH--HHH----HHHHHh---CCcccccCCCCCCH
Confidence 4568888888742 2 67889999999987767776554 433211 000 111111 111221 111 22
Q ss_pred cc-hhhccccccceeEeecCchhHHHHHHhCcceecc
Q 044441 233 PQ-AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAM 268 (333)
Q Consensus 233 p~-~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~ 268 (333)
.+ ..+++++++ +|+.- .|.++=|.+.|+|+|.+
T Consensus 243 ~el~ali~~a~l--~I~~D-SGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 243 DEAVDLIALAKA--VVTND-SGLMHVAAALNRPLVAL 276 (334)
T ss_pred HHHHHHHHhCCE--EEeeC-CHHHHHHHHcCCCEEEE
Confidence 33 367887776 88874 67888899999999987
No 162
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=69.24 E-value=25 Score=30.40 Aligned_cols=99 Identities=12% Similarity=0.217 Sum_probs=51.9
Q ss_pred CCeEEEEEecCccc---CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEecc--ccc
Q 044441 160 PWSVVFVSFGSEYF---LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGW--VPQ 234 (333)
Q Consensus 160 ~~~~v~vs~Gs~~~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~p~ 234 (333)
+++.|.+..|+... .+.+.+.++++.+.+.++.++...+ +.+.+.+....+.++ . ....+.+.+- +.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~-~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~l~e 176 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGG-PEEQEKEIADQIAAG----L--QNPVINLAGKTSLRE 176 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--S-SHHHHHHHHHHHHTT----H--TTTTEEETTTS-HHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEcc-chHHHHHHHHHHHHh----c--ccceEeecCCCCHHH
Confidence 35577777777553 6788999999999888866554433 211001111111111 0 1112333222 222
Q ss_pred -hhhccccccceeEeecCchhHHHHHHhCcceecc
Q 044441 235 -AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAM 268 (333)
Q Consensus 235 -~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~ 268 (333)
..++.++++ +|+.- .|.++=|.+.|+|+|++
T Consensus 177 ~~ali~~a~~--~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 177 LAALISRADL--VIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHTSSE--EEEES-SHHHHHHHHTT--EEEE
T ss_pred HHHHHhcCCE--EEecC-ChHHHHHHHHhCCEEEE
Confidence 367887776 88875 67899999999999998
No 163
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=68.22 E-value=35 Score=30.83 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=35.3
Q ss_pred cceeEeecCchhHHHHHHh----CcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 243 IGGFLSHCGWGSAVEGMVF----GVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~~----GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
++++|+-||=||+++++.. ++|++.+-.. .+|... .++.+++.++|.++++
T Consensus 64 ~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~G-------------~lGFL~-------~~~~~~~~~~l~~~~~ 118 (291)
T PRK02155 64 ADLAVVLGGDGTMLGIGRQLAPYGVPLIGINHG-------------RLGFIT-------DIPLDDMQETLPPMLA 118 (291)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCC-------------Cccccc-------cCCHHHHHHHHHHHHc
Confidence 3449999999999999763 6788877421 123332 3567777788877776
No 164
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=67.86 E-value=30 Score=32.06 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=25.3
Q ss_pred hccccccceeEeecCchh---HHHHHHhCcceecc
Q 044441 237 ILRHGRIGGFLSHCGWGS---AVEGMVFGVPIIAM 268 (333)
Q Consensus 237 ll~~~~~~~~I~hgG~~s---~~eal~~GvP~i~~ 268 (333)
++..-+-+++|++||.-| ++.|...|+|.++.
T Consensus 86 i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 86 RIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 455444455999999986 89999999999875
No 165
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=67.70 E-value=10 Score=29.37 Aligned_cols=40 Identities=13% Similarity=0.070 Sum_probs=29.6
Q ss_pred HHHHHHhhcCCCEEEEcCC---chhHHHHHHHcC-CCeEEEech
Q 044441 7 AFCNILETLKPTLVMYDLF---QPWAAEAAYQYH-IAAVLFLTI 46 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~---~~~~~~~A~~lg-iP~v~~~~~ 46 (333)
.+.+++++.+||+|.+-.. ...+..+++..| +|.|....+
T Consensus 65 ~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg 108 (139)
T PF13477_consen 65 RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHG 108 (139)
T ss_pred HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecC
Confidence 6788899999999976643 234556778889 999875543
No 166
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=66.47 E-value=9.2 Score=36.56 Aligned_cols=36 Identities=11% Similarity=-0.067 Sum_probs=29.8
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
.++.+.+++.+||++|.+.. ...+|+++|+|++.++
T Consensus 361 ~el~~~i~~~~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 361 WDLESLAKEEPVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHHhhccCCCEEEECch---hHHHHHhcCCCEEEec
Confidence 56777888889999999954 4678999999998754
No 167
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=66.33 E-value=8.6 Score=31.52 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=32.1
Q ss_pred cchHHHHHHHhhcCCCEEEEcCCchh---------------HHHHHHHcCCCeEEEechh
Q 044441 3 DAKPAFCNILETLKPTLVMYDLFQPW---------------AAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 3 ~~~~~l~~~l~~~~pD~vv~D~~~~~---------------~~~~A~~lgiP~v~~~~~~ 47 (333)
.+.+.+.+++++++||.++.+..++. ...++.+.|+|...+.+..
T Consensus 48 ~I~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~~ 107 (164)
T PRK00039 48 QIYDGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPLQ 107 (164)
T ss_pred HHHHHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 45678999999999999999833221 1235677888988876543
No 168
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=65.80 E-value=10 Score=36.30 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
.++.+++++.+||++|.+.. ...+|+++|||++.+.
T Consensus 362 ~e~~~~l~~~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 362 FDIESYAKELKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHHHhcCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 56778888899999999954 5789999999998754
No 169
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=65.56 E-value=10 Score=37.30 Aligned_cols=36 Identities=6% Similarity=0.150 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
.++.+.|++.+||+|+.+. ....+|+++|||++.++
T Consensus 364 ~ei~~~I~~~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIARVEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHhcCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 4567888889999999994 55567899999998876
No 170
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=65.50 E-value=24 Score=32.54 Aligned_cols=99 Identities=11% Similarity=0.151 Sum_probs=58.0
Q ss_pred CCeEEEEEecCcc----cCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhc-CCCe-EEecc--
Q 044441 160 PWSVVFVSFGSEY----FLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERN-NKGM-LVQGW-- 231 (333)
Q Consensus 160 ~~~~v~vs~Gs~~----~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~-~~~~~-- 231 (333)
+++.|.+..|+.. ..+.+.+.++++.|...+.++++. +.+.+.. .. +.+.+..... ..++ ...+-
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~-Gg~~e~~--~~----~~i~~~~~~~~~~~~~~l~g~~s 251 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLF-GSAKDHE--AG----NEILAALNTEQQAWCRNLAGETQ 251 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEE-eCHHhHH--HH----HHHHHhcccccccceeeccCCCC
Confidence 4568888888742 267889999999987667776654 4322111 00 1111111000 0111 12121
Q ss_pred ccc-hhhccccccceeEeecCchhHHHHHHhCcceecc
Q 044441 232 VPQ-AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAM 268 (333)
Q Consensus 232 ~p~-~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~ 268 (333)
+.+ ..+++++++ +|+. ..|-++=|.+.|+|+|.+
T Consensus 252 L~el~ali~~a~l--~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 252 LEQAVILIAACKA--IVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred HHHHHHHHHhCCE--EEec-CChHHHHHHHhCCCEEEE
Confidence 233 368887776 8887 468899999999999987
No 171
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=65.28 E-value=11 Score=36.11 Aligned_cols=37 Identities=8% Similarity=0.187 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEec
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 45 (333)
.++.+.+++.+||++|.+. ....+|+++|+|++.++.
T Consensus 360 ~e~~~~i~~~~pdliig~~---~~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 360 TEVGDMIARTEPELIFGTQ---MERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHHHhhCCCEEEecc---hhhHHHHHcCCCEEEEeC
Confidence 5677888889999999995 455578999999998754
No 172
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=64.20 E-value=20 Score=33.00 Aligned_cols=94 Identities=14% Similarity=0.195 Sum_probs=57.5
Q ss_pred CeEEEEEec-Ccc---cCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeE-Eec--ccc
Q 044441 161 WSVVFVSFG-SEY---FLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGML-VQG--WVP 233 (333)
Q Consensus 161 ~~~v~vs~G-s~~---~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~--~~p 233 (333)
++.|.++.| |.. ..+.+.+.++++.+...+..+++ ++.+ ++.+.. +.+.. ...+.. +.+ -+.
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl-~g~~--~e~e~~----~~i~~----~~~~~~~l~~k~sL~ 243 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVL-FGGP--DEEERA----EEIAK----GLPNAVILAGKTSLE 243 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEE-ecCh--HHHHHH----HHHHH----hcCCccccCCCCCHH
Confidence 568999998 442 26789999999999988855544 4433 111111 11111 111211 222 222
Q ss_pred c-hhhccccccceeEeecCchhHHHHHHhCcceecc
Q 044441 234 Q-AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAM 268 (333)
Q Consensus 234 ~-~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~ 268 (333)
+ ..++.+++. ||+. ..|-++=|.+.|+|.|++
T Consensus 244 e~~~li~~a~l--~I~~-DSg~~HlAaA~~~P~I~i 276 (334)
T COG0859 244 ELAALIAGADL--VIGN-DSGPMHLAAALGTPTIAL 276 (334)
T ss_pred HHHHHHhcCCE--EEcc-CChHHHHHHHcCCCEEEE
Confidence 3 256776665 7765 468888899999999998
No 173
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=64.19 E-value=12 Score=31.38 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=33.2
Q ss_pred hHHHHHHHhhcCCC--EEEEcCC-chhHHHHHHHcCCCeEEEechhH
Q 044441 5 KPAFCNILETLKPT--LVMYDLF-QPWAAEAAYQYHIAAVLFLTISA 48 (333)
Q Consensus 5 ~~~l~~~l~~~~pD--~vv~D~~-~~~~~~~A~~lgiP~v~~~~~~~ 48 (333)
...+.+++++..++ ++|..++ .+++..+|+++|+|.|.+.++..
T Consensus 46 ~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 46 IAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred HHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 35677888887775 6665544 66788899999999999887654
No 174
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=63.99 E-value=12 Score=36.80 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
.++.+.+++.+||+||.+. ....+|+++|||++.++
T Consensus 352 ~el~~~i~~~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 352 LEVEDAIAEAAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHHhcCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 4677788889999999884 56668999999998875
No 175
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=63.89 E-value=10 Score=33.03 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=24.4
Q ss_pred CCEEE-EcC-CchhHHHHHHHcCCCeEEEechhH
Q 044441 17 PTLVM-YDL-FQPWAAEAAYQYHIAAVLFLTISA 48 (333)
Q Consensus 17 pD~vv-~D~-~~~~~~~~A~~lgiP~v~~~~~~~ 48 (333)
||+++ .|+ .---|..=|+++|||.|.++-+.+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 99776 554 345577788999999999987653
No 176
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=63.79 E-value=12 Score=36.71 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=30.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEec
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 45 (333)
.++.+.+++.+||+||.+. ....+|+++|||++.++.
T Consensus 354 ~ei~~~i~~~~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 354 QEVADAIAALEPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHHhcCCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 3677788889999999994 566789999999988754
No 177
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=62.13 E-value=13 Score=36.46 Aligned_cols=36 Identities=3% Similarity=-0.082 Sum_probs=29.4
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
-++++++...+||++|... .+..+|+++|||+|.+.
T Consensus 427 ~~l~~~l~~~~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 427 WHLRSLVFTEPVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred HHHHHHHhhcCCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 4566778888999999984 46778999999998865
No 178
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=61.60 E-value=77 Score=32.65 Aligned_cols=76 Identities=18% Similarity=0.049 Sum_probs=45.2
Q ss_pred Eeccccch---hhccccccceeEee---cC-chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcC
Q 044441 228 VQGWVPQA---KILRHGRIGGFLSH---CG-WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLR 300 (333)
Q Consensus 228 ~~~~~p~~---~ll~~~~~~~~I~h---gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~ 300 (333)
+.+++++. .+++.+++ |+.- -| ..++.|++++|+|-..+|...+----+..+ .-|+.+.+ .+
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l---~~~llv~P------~d 414 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL---AEALLVNP------ND 414 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh---CcCeEECC------CC
Confidence 44667766 46666666 6653 24 458899999977522222222111111112 12777753 57
Q ss_pred HHHHHHHHHHHhcC
Q 044441 301 REEVARVIKHVLLQ 314 (333)
Q Consensus 301 ~~~l~~ai~~vl~~ 314 (333)
.++++++|.++|+.
T Consensus 415 ~~~la~ai~~~l~~ 428 (726)
T PRK14501 415 IEGIAAAIKRALEM 428 (726)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999973
No 179
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.94 E-value=19 Score=32.08 Aligned_cols=27 Identities=15% Similarity=0.083 Sum_probs=22.6
Q ss_pred cceeEeecCchhHHHHHH------hCcceeccc
Q 044441 243 IGGFLSHCGWGSAVEGMV------FGVPIIAMP 269 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~------~GvP~i~~P 269 (333)
++++|+-||=||++.++. .++|++++-
T Consensus 36 ~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN 68 (265)
T PRK04885 36 PDIVISVGGDGTLLSAFHRYENQLDKVRFVGVH 68 (265)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCCeEEEEe
Confidence 455999999999999975 488988884
No 180
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=60.38 E-value=14 Score=35.35 Aligned_cols=36 Identities=8% Similarity=0.001 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
.++.+++++.+||++|... .+..+|+++|||++.+.
T Consensus 363 ~~l~~~i~~~~~dliig~s---~~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 363 EDLEDLACAAGADLLITNS---HGRALAQRLALPLVRAG 398 (432)
T ss_pred HHHHHHHhhcCCCEEEECc---chHHHHHHcCCCEEEec
Confidence 4678888889999999984 45779999999998754
No 181
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=59.87 E-value=1.8e+02 Score=28.48 Aligned_cols=90 Identities=10% Similarity=0.065 Sum_probs=54.6
Q ss_pred eEEeccccchh---hccccccceeEe---ecCchhH-HHHHHhCc----ceeccccccchhhHHHHHhHhCeeeEeecCc
Q 044441 226 MLVQGWVPQAK---ILRHGRIGGFLS---HCGWGSA-VEGMVFGV----PIIAMPMVYEQSRNAKVVVDIGMGMDVPRDK 294 (333)
Q Consensus 226 ~~~~~~~p~~~---ll~~~~~~~~I~---hgG~~s~-~eal~~Gv----P~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~ 294 (333)
+.+.+.+|..+ +++.+++ ++. .-|+|.+ .|.++++. |+|.--+.+= | +.+.-|+.+.+
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGa----a---~~l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGA----A---VELKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEeccccc----h---hhcCCCEEECC--
Confidence 44556777664 5566666 543 4588754 59999877 5444433321 1 34445788853
Q ss_pred cCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHh
Q 044441 295 INQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSERM 331 (333)
Q Consensus 295 ~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~ 331 (333)
.+.++++++|.+.|+.. .++-+++.+++.+.+
T Consensus 433 ----~d~~~~A~ai~~AL~m~-~~Er~~R~~~l~~~v 464 (487)
T TIGR02398 433 ----YDPVRMDETIYVALAMP-KAEQQARMREMFDAV 464 (487)
T ss_pred ----CCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Confidence 68999999999999832 223344555554443
No 182
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=59.86 E-value=11 Score=35.93 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=30.4
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
..++.+++++.+||++|.... ...+|+++|||++.+.
T Consensus 358 ~~e~~~~i~~~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 358 HYELEEFVKRLKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHHhCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 456788889999999999855 5668999999997654
No 183
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=59.76 E-value=16 Score=35.11 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=29.4
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
.++.+.+++.+||++|... ....+|+++|||++.+.
T Consensus 367 ~e~~~~i~~~~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 367 WHLRSLLFTEPVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHHhhcCCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 4567778888999999984 46788999999998765
No 184
>PLN02929 NADH kinase
Probab=59.19 E-value=14 Score=33.47 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=43.3
Q ss_pred ccceeEeecCchhHHHHHH---hCcceecccccc------chhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHh
Q 044441 242 RIGGFLSHCGWGSAVEGMV---FGVPIIAMPMVY------EQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVL 312 (333)
Q Consensus 242 ~~~~~I~hgG~~s~~eal~---~GvP~i~~P~~~------DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl 312 (333)
.++++|+-||=||++.|.. .++|++++=... .+++|... +..-+|.... .+.+++.+++++++
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r~lGfL~~-------~~~~~~~~~L~~il 135 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARRSTGHLCA-------ATAEDFEQVLDDVL 135 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cccCcccccc-------CCHHHHHHHHHHHH
Confidence 3355999999999999854 468988884431 23333321 1112555553 57899999999999
Q ss_pred cC
Q 044441 313 LQ 314 (333)
Q Consensus 313 ~~ 314 (333)
++
T Consensus 136 ~g 137 (301)
T PLN02929 136 FG 137 (301)
T ss_pred cC
Confidence 74
No 185
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.28 E-value=25 Score=31.99 Aligned_cols=52 Identities=15% Similarity=0.230 Sum_probs=38.0
Q ss_pred cceeEeecCchhHHHHHH----hCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcC
Q 044441 243 IGGFLSHCGWGSAVEGMV----FGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
++++|+=||=||++.+.. +++|++++... .+|...+ +..+++.+++++++++
T Consensus 73 ~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G-------------~lGFL~~-------~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 73 CELVLVLGGDGTILRAAELARAADVPVLGVNLG-------------HVGFLAE-------AEAEDLDEAVERVVDR 128 (306)
T ss_pred CCEEEEEcCCHHHHHHHHHhccCCCcEEEEecC-------------CCceecc-------CCHHHHHHHHHHHHcC
Confidence 455999999999999875 48899888542 1344442 5678888888888873
No 186
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=58.07 E-value=13 Score=34.62 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=49.0
Q ss_pred CCCeEEec-cccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHH----HHhHhCeeeEeecCccCC
Q 044441 223 NKGMLVQG-WVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAK----VVVDIGMGMDVPRDKINQ 297 (333)
Q Consensus 223 ~~~~~~~~-~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~----~~~~~G~g~~l~~~~~~~ 297 (333)
..+++... ..+-.++|..+++ +||-- ...+.|.++.++|+|......|++...+ -.++...|..+
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~------- 320 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIV------- 320 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EE-------
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCcee-------
Confidence 45665543 3345688997777 99998 5689999999999998876666653321 01122333333
Q ss_pred CcCHHHHHHHHHHHhc
Q 044441 298 RLRREEVARVIKHVLL 313 (333)
Q Consensus 298 ~~~~~~l~~ai~~vl~ 313 (333)
.+.++|.++|+.++.
T Consensus 321 -~~~~eL~~~i~~~~~ 335 (369)
T PF04464_consen 321 -YNFEELIEAIENIIE 335 (369)
T ss_dssp -SSHHHHHHHHTTHHH
T ss_pred -CCHHHHHHHHHhhhh
Confidence 478999999999887
No 187
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=57.95 E-value=17 Score=33.48 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=29.4
Q ss_pred chHHHHHHHhhcCCCEEEEcC-Cc------hhH---HHHHHHcCCCeEEEe
Q 044441 4 AKPAFCNILETLKPTLVMYDL-FQ------PWA---AEAAYQYHIAAVLFL 44 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv~D~-~~------~~~---~~~A~~lgiP~v~~~ 44 (333)
....+.+.+++.+||++|+-+ |. .|+ ..+.++++||.|+-.
T Consensus 68 a~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 68 ALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 456778888999999999983 31 222 234578999999743
No 188
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=57.69 E-value=19 Score=29.73 Aligned_cols=33 Identities=21% Similarity=0.087 Sum_probs=22.4
Q ss_pred HhhcCCCEEEEcCCchh--HHHHHHHcCCCeEEEe
Q 044441 12 LETLKPTLVMYDLFQPW--AAEAAYQYHIAAVLFL 44 (333)
Q Consensus 12 l~~~~pD~vv~D~~~~~--~~~~A~~lgiP~v~~~ 44 (333)
|...+||+||....... .....++.|||++.+.
T Consensus 65 ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 65 IVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred HhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 33469999998643222 3344578999998875
No 189
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=57.55 E-value=22 Score=28.93 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=25.2
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCCC
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSEV 191 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~ 191 (333)
.+|+++||........++..+.+|.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 79999999888778889999999988764
No 190
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=57.42 E-value=18 Score=29.76 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=28.2
Q ss_pred HHhhcCCCEEEEc--CCchhHHHHHHHc------CCCeEEEech
Q 044441 11 ILETLKPTLVMYD--LFQPWAAEAAYQY------HIAAVLFLTI 46 (333)
Q Consensus 11 ~l~~~~pD~vv~D--~~~~~~~~~A~~l------giP~v~~~~~ 46 (333)
++.+.+||+||+. ..+.....+|..+ |.+.|.+-+.
T Consensus 87 il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 87 ILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred HHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 3556799999999 3466677888998 9999987654
No 191
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.37 E-value=29 Score=31.46 Aligned_cols=51 Identities=22% Similarity=0.154 Sum_probs=36.8
Q ss_pred cceeEeecCchhHHHHHH----hCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 243 IGGFLSHCGWGSAVEGMV----FGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
++++|+=||=||++.+.. .++|++++-.. -+|...+ ++.+++.++++++++
T Consensus 69 ~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G-------------~lGFL~~-------~~~~~~~~~l~~i~~ 123 (296)
T PRK04539 69 CDLVAVLGGDGTFLSVAREIAPRAVPIIGINQG-------------HLGFLTQ-------IPREYMTDKLLPVLE 123 (296)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCEEEEecC-------------CCeEeec-------cCHHHHHHHHHHHHc
Confidence 455999999999999974 37898888431 1444442 567788888888876
No 192
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=56.66 E-value=1.2e+02 Score=25.65 Aligned_cols=146 Identities=12% Similarity=0.050 Sum_probs=68.6
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
++++.|..|.++ ..-+..|.+.|..+.+...... +++.+-. ...++....--.+...+..
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~~-----------~~l~~l~--~~~~i~~~~~~~~~~dl~~ 69 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEELE-----------SELTLLA--EQGGITWLARCFDADILEG 69 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCCC-----------HHHHHHH--HcCCEEEEeCCCCHHHhCC
Confidence 447666666543 3344556667877665533211 1111111 1224443221222344565
Q ss_pred cccceeEeecCchhHHH-----HHHhCcceecc--ccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 241 GRIGGFLSHCGWGSAVE-----GMVFGVPIIAM--PMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 241 ~~~~~~I~hgG~~s~~e-----al~~GvP~i~~--P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
+++ +|..-|...+.+ |-..|+|+-++ |-..| +..-..+..-++-+.+..+. ..-.-+..+++.|++++.
T Consensus 70 ~~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g~l~iaisT~G-~sP~la~~lr~~ie~~l~ 145 (205)
T TIGR01470 70 AFL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRSPVVVAISSGG-AAPVLARLLRERIETLLP 145 (205)
T ss_pred cEE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcCCEEEEEECCC-CCcHHHHHHHHHHHHhcc
Confidence 554 888877664444 33567887433 33222 22222233334555565322 122334567777777775
Q ss_pred CcchHHHHHHHHHHHHHh
Q 044441 314 QEEGKQIRRKAKEMSERM 331 (333)
Q Consensus 314 ~~~~~~~~~~a~~l~~~~ 331 (333)
.+ -..+-+.+.++++.+
T Consensus 146 ~~-~~~~~~~~~~~R~~~ 162 (205)
T TIGR01470 146 PS-LGDLATLAATWRDAV 162 (205)
T ss_pred hh-HHHHHHHHHHHHHHH
Confidence 21 233444444444443
No 193
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=55.42 E-value=63 Score=25.55 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=30.1
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEec
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRL 199 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 199 (333)
..+|+|++||......+.++++++.+. .+.++++....
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 349999999988878899999999885 35777776553
No 194
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=55.17 E-value=18 Score=30.01 Aligned_cols=38 Identities=13% Similarity=-0.026 Sum_probs=28.4
Q ss_pred HHHHHHhhcCCCEEEEc--CCchhHHHHHHHcCCCeEEEe
Q 044441 7 AFCNILETLKPTLVMYD--LFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D--~~~~~~~~~A~~lgiP~v~~~ 44 (333)
.+.+..++.++|.||+= .-.+.|..+|+++|+|+|..-
T Consensus 44 ~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 44 ELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred HHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 44455555679999954 335778889999999999864
No 195
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=54.76 E-value=21 Score=31.42 Aligned_cols=41 Identities=22% Similarity=0.185 Sum_probs=27.7
Q ss_pred HHHHHHhhcCCCEEEEcCC-------------chhHHHHHHHcCCCeEEEechh
Q 044441 7 AFCNILETLKPTLVMYDLF-------------QPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~-------------~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
.+..++++.+||+||+-.. +.+|+.=|..+|||.|.++...
T Consensus 74 al~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~ 127 (252)
T COG0496 74 GLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAY 127 (252)
T ss_pred HHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehh
Confidence 3556667778999997521 2334444567999999987653
No 196
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=53.71 E-value=11 Score=36.43 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=41.1
Q ss_pred hhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHHHHHHHH
Q 044441 253 GSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKE 326 (333)
Q Consensus 253 ~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~ 326 (333)
-++.||+++|+|++..=..+ -+.-++..-.|..+++ +.-....+++++.++.+ ++.++.++.+
T Consensus 380 iv~IEAMa~glPvvAt~~GG----P~EiV~~~~tG~l~dp----~~e~~~~~a~~~~kl~~---~p~l~~~~~~ 442 (495)
T KOG0853|consen 380 IVPIEAMACGLPVVATNNGG----PAEIVVHGVTGLLIDP----GQEAVAELADALLKLRR---DPELWARMGK 442 (495)
T ss_pred ceeHHHHhcCCCEEEecCCC----ceEEEEcCCcceeeCC----chHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence 47899999999999984322 2223333346777752 11223369999999998 6777666544
No 197
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=53.46 E-value=20 Score=29.15 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=33.2
Q ss_pred cchHHHHHHHhhcCCCEEEEcCCch---------------hHHHHHHHcCCCeEEEechh
Q 044441 3 DAKPAFCNILETLKPTLVMYDLFQP---------------WAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 3 ~~~~~l~~~l~~~~pD~vv~D~~~~---------------~~~~~A~~lgiP~v~~~~~~ 47 (333)
.+.+.+.+++++++||.+..+..++ ....++.+.|+|..-+.+..
T Consensus 44 ~I~~~l~~~i~~y~P~~~aiE~~F~~~N~~sa~~lg~arGvilla~~~~~ipv~Ey~P~~ 103 (156)
T TIGR00228 44 LIYAGVTEIITQFQPNYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQ 103 (156)
T ss_pred HHHHHHHHHHHHhCCCEEEEeHHhhccCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 4578899999999999999983322 13456677888988877653
No 198
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.35 E-value=29 Score=31.34 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=37.7
Q ss_pred cceeEeecCchhHHHHHH----hCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcC
Q 044441 243 IGGFLSHCGWGSAVEGMV----FGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
++++|+=||=||++.++. .++|++.+-... +|..- .++.+++.+++++++++
T Consensus 65 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~G~-------------lGFLt-------~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 65 ADMVISIGGDGTFLRTATYVGNSNIPILGINTGR-------------LGFLA-------TVSKEEIEETIDELLNG 120 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEecCC-------------CCccc-------ccCHHHHHHHHHHHHcC
Confidence 455999999999999976 378888874321 33333 36778888888888873
No 199
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=52.30 E-value=20 Score=30.11 Aligned_cols=39 Identities=15% Similarity=-0.022 Sum_probs=28.6
Q ss_pred HHHHHHhhcCCCEEEEc--CCchhHHHHHHHcCCCeEEEec
Q 044441 7 AFCNILETLKPTLVMYD--LFQPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D--~~~~~~~~~A~~lgiP~v~~~~ 45 (333)
.+.+.+++.++|+|+.= .-.+.|..+|..+|+|++..--
T Consensus 41 ~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 41 EFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred HHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 33444555689999854 2357888999999999998753
No 200
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=52.01 E-value=82 Score=26.14 Aligned_cols=118 Identities=15% Similarity=0.094 Sum_probs=58.1
Q ss_pred hHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEE
Q 044441 149 TKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLV 228 (333)
Q Consensus 149 ~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 228 (333)
.++-.+|.... ..+|+.|+ ....+..+.++..+.+-.++=.+...... .....+ .....+.
T Consensus 22 ~~lG~~la~~g---~~lV~GGg----~~GlM~a~a~ga~~~gG~viGi~p~~l~~----~~~~~~--------~~~~~i~ 82 (178)
T TIGR00730 22 AELGAYLAGQG---WGLVYGGG----RVGLMGAIADAAMENGGTAVGVNPSGLFS----GEVVHQ--------NLTELIE 82 (178)
T ss_pred HHHHHHHHHCC---CEEEECCC----hHhHHHHHHHHHHhcCCeEEEecchhhhh----hhccCC--------CCCceEE
Confidence 44556676543 56666664 23467777777776665554443211000 000000 1112223
Q ss_pred eccccch-h-hccccccceeEeecCchhHHHHHH---------hCcceecccc--ccchhh-HHHHHhHhCe
Q 044441 229 QGWVPQA-K-ILRHGRIGGFLSHCGWGSAVEGMV---------FGVPIIAMPM--VYEQSR-NAKVVVDIGM 286 (333)
Q Consensus 229 ~~~~p~~-~-ll~~~~~~~~I~hgG~~s~~eal~---------~GvP~i~~P~--~~DQ~~-na~~~~~~G~ 286 (333)
....... . +...++ ..++--||.||+-|.+. +.+|++++=. +.|... ..+.+.+.|.
T Consensus 83 ~~~~~~Rk~~m~~~sd-a~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gf 153 (178)
T TIGR00730 83 VNGMHERKAMMAELAD-AFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGF 153 (178)
T ss_pred ECCHHHHHHHHHHhCC-EEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCC
Confidence 3333322 3 333344 34556678899988742 5999988732 223322 3345555553
No 201
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.86 E-value=29 Score=31.55 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=36.9
Q ss_pred ccceeEeecCchhHHHHHHh----CcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 242 RIGGFLSHCGWGSAVEGMVF----GVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 242 ~~~~~I~hgG~~s~~eal~~----GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
.++++|+=||=||++.+... ++|++.+-.. .+|... .++.+++.++++++++
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~G-------------~lGFLt-------~~~~~~~~~~l~~l~~ 123 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLAPCGIPLLTINTG-------------HLGFLT-------EAYLNQLDEAIDQVLA 123 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeCC-------------CCcccc-------cCCHHHHHHHHHHHHc
Confidence 35669999999999999764 7898888431 123222 2567788888888876
No 202
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.83 E-value=34 Score=30.25 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=37.0
Q ss_pred ccceeEeecCchhHHHHHH-hCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 242 RIGGFLSHCGWGSAVEGMV-FGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 242 ~~~~~I~hgG~~s~~eal~-~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
+++++|+=||=||++.|+. .++|++.+-... +|... .++.+++.++++++++
T Consensus 41 ~~d~vi~iGGDGT~L~a~~~~~~Pilgin~G~-------------lGfl~-------~~~~~~~~~~l~~~~~ 93 (256)
T PRK14075 41 TADLIIVVGGDGTVLKAAKKVGTPLVGFKAGR-------------LGFLS-------SYTLEEIDRFLEDLKN 93 (256)
T ss_pred CCCEEEEECCcHHHHHHHHHcCCCEEEEeCCC-------------Ccccc-------ccCHHHHHHHHHHHHc
Confidence 3455999999999999975 478877773211 33333 3567888888888877
No 203
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=51.48 E-value=35 Score=31.98 Aligned_cols=43 Identities=7% Similarity=-0.103 Sum_probs=21.5
Q ss_pred HHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEE
Q 044441 151 IMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIR 195 (333)
Q Consensus 151 l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~ 195 (333)
+.+.+.....+++++|+-++.. ....++.+.+.|++.+..+.+
T Consensus 14 l~~~~~~~~~~r~livt~~~~~--~~g~~~~v~~~L~~~gi~~~~ 56 (375)
T cd08194 14 TGAVLADLGGKRPLIVTDKVMV--KLGLVDKLTDSLKKEGIESAI 56 (375)
T ss_pred HHHHHHHcCCCeEEEEcCcchh--hcchHHHHHHHHHHCCCeEEE
Confidence 3334433222335556533322 233566677777776665543
No 204
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=51.32 E-value=1.2e+02 Score=25.70 Aligned_cols=143 Identities=8% Similarity=0.004 Sum_probs=69.3
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
++++.|..|.++ ...+..|.+.|..+.+... . +.+.+.+.. ....+...........+..
T Consensus 11 k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~-~----------~~~~l~~l~--~~~~i~~~~~~~~~~~l~~ 70 (202)
T PRK06718 11 KRVVIVGGGKVA-------GRRAITLLKYGAHIVVISP-E----------LTENLVKLV--EEGKIRWKQKEFEPSDIVD 70 (202)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcC-C----------CCHHHHHHH--hCCCEEEEecCCChhhcCC
Confidence 447777666553 3445566667766655432 1 111111111 1223433333333444665
Q ss_pred cccceeEeecCchhHHHHHH----hCcceeccccccchhhHHH-----HHhHhCeeeEeecCccCCCcCHHHHHHHHHHH
Q 044441 241 GRIGGFLSHCGWGSAVEGMV----FGVPIIAMPMVYEQSRNAK-----VVVDIGMGMDVPRDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 241 ~~~~~~I~hgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~-----~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~v 311 (333)
+++ +|+--+.-.+.+.++ .++++-+ .|.+..+. .+.+-++-+.+..+. ..-.-+..+++.|+.+
T Consensus 71 adl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g~l~iaIsT~G-~sP~la~~lr~~ie~~ 143 (202)
T PRK06718 71 AFL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRGKLTISVSTDG-ASPKLAKKIRDELEAL 143 (202)
T ss_pred ceE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcCCeEEEEECCC-CChHHHHHHHHHHHHH
Confidence 555 888777666666654 3444333 34333322 233345666665322 1223345677777776
Q ss_pred hcCcchHHHHHHHHHHHHHh
Q 044441 312 LLQEEGKQIRRKAKEMSERM 331 (333)
Q Consensus 312 l~~~~~~~~~~~a~~l~~~~ 331 (333)
+.. +-..+-+.+.++++.+
T Consensus 144 ~~~-~~~~~~~~~~~~R~~~ 162 (202)
T PRK06718 144 YDE-SYESYIDFLYECRQKI 162 (202)
T ss_pred cch-hHHHHHHHHHHHHHHH
Confidence 641 1234555555555544
No 205
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=50.89 E-value=27 Score=32.78 Aligned_cols=11 Identities=64% Similarity=1.020 Sum_probs=9.0
Q ss_pred hCcceeccccc
Q 044441 261 FGVPIIAMPMV 271 (333)
Q Consensus 261 ~GvP~i~~P~~ 271 (333)
.++|+|.+|..
T Consensus 129 ~~~P~i~IPTT 139 (379)
T TIGR02638 129 PGVPIIAIPTT 139 (379)
T ss_pred CCCCEEEECCC
Confidence 36899999985
No 206
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=50.77 E-value=21 Score=34.05 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=26.1
Q ss_pred HHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 10 NILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 10 ~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
+.+++.+||++|..+ -+..+|+++|||++.+.
T Consensus 349 ~~l~~~~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 349 EAVLEFEPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred HHHhhCCCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 455778999999983 35668999999999965
No 207
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=50.69 E-value=1.5e+02 Score=24.71 Aligned_cols=139 Identities=12% Similarity=0.129 Sum_probs=70.0
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccc-------cch
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWV-------PQA 235 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------p~~ 235 (333)
+++.-.||++. -....+++.|.+.+..+-...+.... ..+.....+.+ ....+....|. .+.
T Consensus 4 Ill~vtGsiaa---~~~~~li~~L~~~g~~V~vv~T~~A~------~fi~~~~l~~l--~~~~v~~~~~~~~~~~~~~hi 72 (182)
T PRK07313 4 ILLAVSGSIAA---YKAADLTSQLTKRGYQVTVLMTKAAT------KFITPLTLQVL--SKNPVHLDVMDEHDPKLMNHI 72 (182)
T ss_pred EEEEEeChHHH---HHHHHHHHHHHHCCCEEEEEEChhHH------HHcCHHHHHHH--hCCceEeccccccccCCcccc
Confidence 55556666543 23455666776677766555543211 11222112222 12223332222 222
Q ss_pred hhccccccceeEeecCchhHHHH-------------HHh--Ccceeccccc----cch---hhHHHHHhHhCeeeEeecC
Q 044441 236 KILRHGRIGGFLSHCGWGSAVEG-------------MVF--GVPIIAMPMV----YEQ---SRNAKVVVDIGMGMDVPRD 293 (333)
Q Consensus 236 ~ll~~~~~~~~I~hgG~~s~~ea-------------l~~--GvP~i~~P~~----~DQ---~~na~~~~~~G~g~~l~~~ 293 (333)
++...++ ..+|.-+-+||+... +.. ++|++++|-. ... ..|..++++.|+=+.-...
T Consensus 73 ~l~~~aD-~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~ 151 (182)
T PRK07313 73 ELAKRAD-LFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKE 151 (182)
T ss_pred ccccccC-EEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCC
Confidence 3334444 234666665544322 344 8999999953 232 4567777777765554321
Q ss_pred c--------cCCCcCHHHHHHHHHHHhc
Q 044441 294 K--------INQRLRREEVARVIKHVLL 313 (333)
Q Consensus 294 ~--------~~~~~~~~~l~~ai~~vl~ 313 (333)
. +.+-.+.+++.+.+.+.+.
T Consensus 152 g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 152 GLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 0 1234566777777777664
No 208
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=50.69 E-value=13 Score=28.87 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=23.2
Q ss_pred hHHHHHHH--hhcCCCEEEEcCC-chhHHHHHH-HcCCCeEEEec
Q 044441 5 KPAFCNIL--ETLKPTLVMYDLF-QPWAAEAAY-QYHIAAVLFLT 45 (333)
Q Consensus 5 ~~~l~~~l--~~~~pD~vv~D~~-~~~~~~~A~-~lgiP~v~~~~ 45 (333)
...+.+++ +..+||+|.+-.. ......+++ ..++|+|....
T Consensus 60 ~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 60 LRRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 35667777 8889999998743 223344445 78999999765
No 209
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=50.61 E-value=25 Score=33.26 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=29.4
Q ss_pred chHHHHHHHhhcCCCEEEEcC-Cc------hhHH---HHHHHcCCCeEEEe
Q 044441 4 AKPAFCNILETLKPTLVMYDL-FQ------PWAA---EAAYQYHIAAVLFL 44 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv~D~-~~------~~~~---~~A~~lgiP~v~~~ 44 (333)
....+.+.+++.+||++|+-+ |. .|+. .+.+++|||.++-.
T Consensus 64 a~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 64 AKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 346778889999999999983 31 2222 34567999999854
No 210
>PRK03202 6-phosphofructokinase; Provisional
Probab=50.45 E-value=91 Score=28.58 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=30.8
Q ss_pred hhccccccceeEeecCchhHHHHHH---hCcceeccccccc
Q 044441 236 KILRHGRIGGFLSHCGWGSAVEGMV---FGVPIIAMPMVYE 273 (333)
Q Consensus 236 ~ll~~~~~~~~I~hgG~~s~~eal~---~GvP~i~~P~~~D 273 (333)
+-|..-.++.+|.=||.+|+..|.. +|+|+|++|-.-|
T Consensus 87 ~~l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkTID 127 (320)
T PRK03202 87 ENLKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGTID 127 (320)
T ss_pred HHHHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEEeccccc
Confidence 4566678888999999999887754 5999999997644
No 211
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=50.27 E-value=26 Score=33.19 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=29.4
Q ss_pred chHHHHHHHhhcCCCEEEEcC-Cc------hhHH---HHHHHcCCCeEEEe
Q 044441 4 AKPAFCNILETLKPTLVMYDL-FQ------PWAA---EAAYQYHIAAVLFL 44 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv~D~-~~------~~~~---~~A~~lgiP~v~~~ 44 (333)
....+.+.+++.+||++|+-+ |. .|+. .+.+++|||.++-.
T Consensus 64 a~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 64 AVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 346778889999999999983 31 2222 34567999999854
No 212
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=50.24 E-value=27 Score=33.25 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=27.4
Q ss_pred HHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEec
Q 044441 9 CNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 9 ~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 45 (333)
.+.+++.+||++|.. .-+..+|+++|||++.+..
T Consensus 343 ~~~~~~~~pDl~Ig~---s~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 343 IAAVEEYRPDLAIGT---TPLVQYAKEKGIPALYYTN 376 (416)
T ss_pred HHHHhhcCCCEEEeC---ChhhHHHHHhCCCEEEecC
Confidence 455677899999988 4467799999999998654
No 213
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.17 E-value=34 Score=30.80 Aligned_cols=51 Identities=10% Similarity=0.136 Sum_probs=35.4
Q ss_pred cceeEeecCchhHHHHHH----hCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 243 IGGFLSHCGWGSAVEGMV----FGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
++++|+-||=||++.++. .++|++.+-... +|..- .++.+++.++++++++
T Consensus 65 ~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN~G~-------------lGFLt-------~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 65 SDFLISLGGDGTLISLCRKAAEYDKFVLGIHAGH-------------LGFLT-------DITVDEAEKFFQAFFQ 119 (287)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCcEEEEeCCC-------------cccCC-------cCCHHHHHHHHHHHHc
Confidence 455999999999998865 377888773211 23322 3567788888888776
No 214
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=49.91 E-value=2.8e+02 Score=27.77 Aligned_cols=28 Identities=21% Similarity=0.468 Sum_probs=17.2
Q ss_pred ceeEeecCchhHHHHH---HhCcceeccccc
Q 044441 244 GGFLSHCGWGSAVEGM---VFGVPIIAMPMV 271 (333)
Q Consensus 244 ~~~I~hgG~~s~~eal---~~GvP~i~~P~~ 271 (333)
++||+-.|.-.-+-.+ ..-+|+|.+|..
T Consensus 467 ~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~ 497 (577)
T PLN02948 467 QVIIAGAGGAAHLPGMVASMTPLPVIGVPVK 497 (577)
T ss_pred CEEEEEcCccccchHHHhhccCCCEEEcCCC
Confidence 4488777754333332 235799999985
No 215
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=49.75 E-value=61 Score=29.39 Aligned_cols=34 Identities=18% Similarity=0.387 Sum_probs=27.1
Q ss_pred hhccccccceeEeecCchhHHHHHHhCcceeccc
Q 044441 236 KILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMP 269 (333)
Q Consensus 236 ~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P 269 (333)
.++..-.-+++|++++..+..-|-..|+|.+.+-
T Consensus 87 ~~l~~~~pDlVi~d~~~~~~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 87 NIIREYNPDLIISDFEYSTVVAAKLLKIPVICIS 120 (321)
T ss_pred HHHHhcCCCEEEECCchHHHHHHHhcCCCEEEEe
Confidence 3444445566999999999999999999999763
No 216
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=49.43 E-value=48 Score=30.28 Aligned_cols=28 Identities=29% Similarity=0.691 Sum_probs=18.6
Q ss_pred cceeEeecCchhHHHH-----HHh--Ccceeccccc
Q 044441 243 IGGFLSHCGWGSAVEG-----MVF--GVPIIAMPMV 271 (333)
Q Consensus 243 ~~~~I~hgG~~s~~ea-----l~~--GvP~i~~P~~ 271 (333)
.+.+|.=|| ||++.. ..+ |+|++.+|..
T Consensus 79 ~d~IIaiGG-Gs~~D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 79 VDAVIAVGG-GSTLDTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred cCEEEEeCC-chHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 344777776 455443 223 9999999974
No 217
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=48.96 E-value=17 Score=35.14 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEE
Q 044441 7 AFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLF 43 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~ 43 (333)
++.+.+++.+||++|.... ...+|+++|||++.+
T Consensus 386 e~~~~i~~~~pDllig~~~---~~~~a~k~gip~~~~ 419 (457)
T TIGR01284 386 ELEEIIEKYKPDIILTGIR---EGELAKKLGVPYINI 419 (457)
T ss_pred HHHHHHHhcCCCEEEecCC---cchhhhhcCCCEEEc
Confidence 5677788899999998843 466899999999886
No 218
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=48.96 E-value=14 Score=31.31 Aligned_cols=39 Identities=28% Similarity=0.167 Sum_probs=25.1
Q ss_pred HHHHhhcCCCEEEEcC---------C----chhHHHHHHHcCCCeEEEechh
Q 044441 9 CNILETLKPTLVMYDL---------F----QPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 9 ~~~l~~~~pD~vv~D~---------~----~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
..++.+.+||+||+-. . +..++.-|...|||.|.++...
T Consensus 84 ~~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~ 135 (196)
T PF01975_consen 84 DGLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDS 135 (196)
T ss_dssp HCTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEES
T ss_pred HhhhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccc
Confidence 3344555799999752 1 2334555667899999998654
No 219
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=48.59 E-value=21 Score=34.40 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEE
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLF 43 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~ 43 (333)
.++.+.+++.+||++|... .+..+|+++|||++.+
T Consensus 377 ~e~~~~i~~~~pdllig~s---~~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 377 LEFEEILEKLKPDIIFSGI---KEKFVAQKLGVPYRQM 411 (443)
T ss_pred HHHHHHHHhcCCCEEEEcC---cchhhhhhcCCCeEec
Confidence 3556667888999999884 4467899999999875
No 220
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.35 E-value=33 Score=30.76 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=34.2
Q ss_pred cceeEeecCchhHHHHHH---hCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 243 IGGFLSHCGWGSAVEGMV---FGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~---~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
++++|+-||-||+++++. .++|+++++... .|.. ..+..+++.+++.++++
T Consensus 58 ~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~-------------lGFl-------~~~~~~~~~~~l~~i~~ 111 (277)
T PRK03708 58 VDFIIAIGGDGTILRIEHKTKKDIPILGINMGT-------------LGFL-------TEVEPEETFFALSRLLE 111 (277)
T ss_pred CCEEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC-------------CCcc-------ccCCHHHHHHHHHHHHc
Confidence 455999999999999873 456888887532 1111 12456677777777776
No 221
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=48.30 E-value=98 Score=28.35 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=30.6
Q ss_pred hhccccccceeEeecCchhHHHHHH---hCcceeccccccc
Q 044441 236 KILRHGRIGGFLSHCGWGSAVEGMV---FGVPIIAMPMVYE 273 (333)
Q Consensus 236 ~ll~~~~~~~~I~hgG~~s~~eal~---~GvP~i~~P~~~D 273 (333)
+-|..-.++.+|.=||-+|+.-|.. +|+|+|++|-.-|
T Consensus 86 ~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTID 126 (317)
T cd00763 86 EQLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTID 126 (317)
T ss_pred HHHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEeccccc
Confidence 4466678888999999999887754 5999999997543
No 222
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=48.19 E-value=22 Score=34.55 Aligned_cols=34 Identities=9% Similarity=0.071 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEE
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVL 42 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~ 42 (333)
.++.+.+++.+||++|.. .....+|+++|||++-
T Consensus 383 ~e~~~~i~~~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 383 RELYKMLKEAKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHHhhcCCCEEEec---CchhhhhhhcCCCEEE
Confidence 456677888899999997 5566889999999984
No 223
>PRK04940 hypothetical protein; Provisional
Probab=47.85 E-value=27 Score=29.12 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=26.3
Q ss_pred CCCEEEEcCC-chhHHHHHHHcCCCeEEEechh
Q 044441 16 KPTLVMYDLF-QPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 16 ~pD~vv~D~~-~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
++.++|.-++ .++|..+|+++|+|.|.+.++.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 4677776654 7889999999999999998764
No 224
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=47.66 E-value=32 Score=29.33 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=26.1
Q ss_pred HHhhcCCCEEEEcCCc--hhHHHHHHHcCCCeEEEechh
Q 044441 11 ILETLKPTLVMYDLFQ--PWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 11 ~l~~~~pD~vv~D~~~--~~~~~~A~~lgiP~v~~~~~~ 47 (333)
.+...+||+||..... .....-....|+|++.+....
T Consensus 55 ~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 55 AILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHhCCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 3555799999988554 456666678899999988764
No 225
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.31 E-value=98 Score=25.30 Aligned_cols=74 Identities=12% Similarity=0.093 Sum_probs=51.0
Q ss_pred hhHHHHHHhCcceeccccc--cchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Q 044441 253 GSAVEGMVFGVPIIAMPMV--YEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSER 330 (333)
Q Consensus 253 ~s~~eal~~GvP~i~~P~~--~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~ 330 (333)
-|..|--.+|.=.+.= .- -=+..|+.+.++.|.=.++- -+..+.++|.++.++=|.+++..+++..+.++.+.
T Consensus 88 ~S~~EQasAGLd~Ls~-~E~a~f~~LN~aY~~rFgfPfI~a----Vkg~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rI 162 (176)
T COG3195 88 ESTSEQASAGLDRLSP-EEFARFTELNAAYVERFGFPFIIA----VKGNTKDTILAAFERRLDNDREQEFATALAEIERI 162 (176)
T ss_pred hhHHHHHhcCcccCCH-HHHHHHHHHHHHHHHhcCCceEEe----ecCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3556666666544321 11 12567999999999887775 24568999999888888876677888888777664
Q ss_pred h
Q 044441 331 M 331 (333)
Q Consensus 331 ~ 331 (333)
.
T Consensus 163 A 163 (176)
T COG3195 163 A 163 (176)
T ss_pred H
Confidence 3
No 226
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=46.82 E-value=1.6e+02 Score=24.07 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=43.0
Q ss_pred cEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCCChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHH
Q 044441 106 KFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKEDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASG 185 (333)
Q Consensus 106 ~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~ 185 (333)
...++-+.++.-......++..+| .+..+|-....- +....+++.+.+....+. +|+|++|+-. .+ .-+.+-
T Consensus 50 ~ifllG~~~~~~~~~~~~l~~~yP-~l~ivg~~~g~f-~~~~~~~i~~~I~~~~pd-iv~vglG~Pk---QE--~~~~~~ 121 (172)
T PF03808_consen 50 RIFLLGGSEEVLEKAAANLRRRYP-GLRIVGYHHGYF-DEEEEEAIINRINASGPD-IVFVGLGAPK---QE--RWIARH 121 (172)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHCC-CeEEEEecCCCC-ChhhHHHHHHHHHHcCCC-EEEEECCCCH---HH--HHHHHH
Confidence 455555555433333334555554 555565322110 223466777777765544 9999999742 22 222222
Q ss_pred HhcCCCcEEEEEe
Q 044441 186 LLLSEVSFIRVLR 198 (333)
Q Consensus 186 l~~~~~~~i~~~~ 198 (333)
....+..++..++
T Consensus 122 ~~~l~~~v~i~vG 134 (172)
T PF03808_consen 122 RQRLPAGVIIGVG 134 (172)
T ss_pred HHHCCCCEEEEEC
Confidence 3345666444444
No 227
>PLN02470 acetolactate synthase
Probab=46.63 E-value=1.2e+02 Score=30.43 Aligned_cols=28 Identities=18% Similarity=0.446 Sum_probs=22.6
Q ss_pred ccceeEeecCc------hhHHHHHHhCcceeccc
Q 044441 242 RIGGFLSHCGW------GSAVEGMVFGVPIIAMP 269 (333)
Q Consensus 242 ~~~~~I~hgG~------~s~~eal~~GvP~i~~P 269 (333)
..+++++|.|- +.+++|...++|+|++.
T Consensus 76 ~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 76 KVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 34558888884 47889999999999994
No 228
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=46.53 E-value=41 Score=31.25 Aligned_cols=10 Identities=30% Similarity=0.933 Sum_probs=8.8
Q ss_pred Ccceeccccc
Q 044441 262 GVPIIAMPMV 271 (333)
Q Consensus 262 GvP~i~~P~~ 271 (333)
++|+|.+|..
T Consensus 124 ~~P~i~VPTt 133 (357)
T cd08181 124 ALPVVAIPTT 133 (357)
T ss_pred CCCEEEEeCC
Confidence 7899999975
No 229
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=46.26 E-value=46 Score=27.24 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=24.2
Q ss_pred CCCCeEEEEEecCcccCCHHHHHHHHHHHhcC
Q 044441 158 KEPWSVVFVSFGSEYFLSKDEMHEIASGLLLS 189 (333)
Q Consensus 158 ~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~ 189 (333)
.+.+..+|+++||......+.+...+..|...
T Consensus 4 ~~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 4 SPASALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CCcCCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 34455899999998766677788888888664
No 230
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=45.59 E-value=41 Score=31.81 Aligned_cols=19 Identities=5% Similarity=0.146 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhcCCCcEE
Q 044441 176 KDEMHEIASGLLLSEVSFI 194 (333)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~i 194 (333)
...+..+.+.|++.+..+.
T Consensus 63 ~g~~~~v~~~L~~~gi~~~ 81 (395)
T PRK15454 63 AGMTAGLTRSLAVKGIAMT 81 (395)
T ss_pred CccHHHHHHHHHHcCCeEE
Confidence 3456667777776666543
No 231
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=45.54 E-value=32 Score=33.24 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=29.0
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEE
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLF 43 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~ 43 (333)
..++.+.+++.+||++|.. .....+|+++|||++.+
T Consensus 384 ~~e~~~~i~~~~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 384 PRELLKLLLEYKADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHHhhcCCCEEEEc---cchHHHHHhcCCCEEEc
Confidence 3567788888999999987 34466888999999875
No 232
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=45.51 E-value=25 Score=34.02 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=24.7
Q ss_pred HHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeE
Q 044441 8 FCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAV 41 (333)
Q Consensus 8 l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v 41 (333)
+.+.+++.+||++|.... +..+|+++|||++
T Consensus 389 ~~~~~~~~~pDliig~s~---~~~~A~klgiP~v 419 (461)
T TIGR01860 389 FFEVLDLIKPDVIFTGPR---VGELVKKLHIPYV 419 (461)
T ss_pred HHHHHHhcCCCEEEeCCc---chhhHhhcCCCEE
Confidence 445677889999998843 4568999999998
No 233
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=45.41 E-value=42 Score=29.76 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=32.7
Q ss_pred HHHHHHHhhcCCCEEEEc------CCchhHHHHHHHcCCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYD------LFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D------~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
..+.+.+++..+|+|++- ....-+..+|+.||+|++++.+-.
T Consensus 101 ~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i 148 (260)
T COG2086 101 KALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKI 148 (260)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEE
Confidence 456677888999999953 235568899999999999976543
No 234
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=45.00 E-value=40 Score=29.16 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=31.3
Q ss_pred chHHHHHHHhhcCCCEEEEcCC--------------ch--------hHHHHHHHcCCCeEEEechhH
Q 044441 4 AKPAFCNILETLKPTLVMYDLF--------------QP--------WAAEAAYQYHIAAVLFLTISA 48 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv~D~~--------------~~--------~~~~~A~~lgiP~v~~~~~~~ 48 (333)
+...+..-+++++||+||+..- ++ -....++.+|||.+.+.+.+.
T Consensus 236 l~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY 302 (324)
T KOG1344|consen 236 LKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGY 302 (324)
T ss_pred HHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCce
Confidence 4556677788899999998521 11 123457789999999877654
No 235
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=44.96 E-value=35 Score=28.51 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=21.6
Q ss_pred HHHHHHHhhcCCCEEEE-c-CCchhHHHHHHHcCCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMY-D-LFQPWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~-D-~~~~~~~~~A~~lgiP~v~~~~~ 46 (333)
..+.++++.++||++|. + -+.+.-...|++.|||.+.+..-
T Consensus 85 ~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 85 WAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp HHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEEE-
T ss_pred HHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEeee
Confidence 45788899999998774 3 24455556778889999998754
No 236
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=44.60 E-value=27 Score=26.01 Aligned_cols=38 Identities=16% Similarity=0.039 Sum_probs=28.7
Q ss_pred hHHHHHHHhhcCCCEEEEcC---CchhHHHHHHHcCCCeEE
Q 044441 5 KPAFCNILETLKPTLVMYDL---FQPWAAEAAYQYHIAAVL 42 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~---~~~~~~~~A~~lgiP~v~ 42 (333)
.+.+.++.++.+.|++|+.+ +.-...+..++.|||++.
T Consensus 51 ~~~l~~~a~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 51 PEELADFAKENKIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp HHHHHHHHHHTTESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred HHHHHHHHHHcCCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 46788888999999999984 344566777888999764
No 237
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=44.49 E-value=47 Score=31.17 Aligned_cols=43 Identities=7% Similarity=0.010 Sum_probs=21.4
Q ss_pred HHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEE
Q 044441 151 IMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIR 195 (333)
Q Consensus 151 l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~ 195 (333)
+.+++.....+++++|+-.+.. .....+.+.+.|++.+..+.+
T Consensus 21 l~~~~~~~g~~~~lvvtd~~~~--~~g~~~~v~~~L~~~g~~~~~ 63 (382)
T PRK10624 21 LTDEVKRRGFKKALIVTDKTLV--KCGVVAKVTDVLDAAGLAYEI 63 (382)
T ss_pred HHHHHHhcCCCEEEEEeCcchh--hCcchHHHHHHHHHCCCeEEE
Confidence 4444444332334444433322 224566677777777766544
No 238
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.49 E-value=47 Score=30.04 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=37.7
Q ss_pred cceeEeecCchhHHHHHH----hCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcC
Q 044441 243 IGGFLSHCGWGSAVEGMV----FGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
++++|+=||-||+++++. .++|++.+... -+|... .++.+++.+++++++++
T Consensus 63 ~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-------------~lGFl~-------~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 63 CDLVIVVGGDGSLLGAARALARHNVPVLGINRG-------------RLGFLT-------DIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-------------cccccc-------cCCHHHHHHHHHHHHcC
Confidence 344999999999999974 36788887542 133222 36788999999999873
No 239
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=44.39 E-value=25 Score=30.07 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=25.0
Q ss_pred HHHHHhhcC--CCEEEEcCCchh-------HHHHHHHcCCCeEEEech
Q 044441 8 FCNILETLK--PTLVMYDLFQPW-------AAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 8 l~~~l~~~~--pD~vv~D~~~~~-------~~~~A~~lgiP~v~~~~~ 46 (333)
+.+.+++.+ ||+|++|.+..+ |..+...+++|+|.+.=.
T Consensus 83 l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK~ 130 (208)
T cd06559 83 LLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAKS 130 (208)
T ss_pred HHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEcc
Confidence 666666654 999999955332 333444567788886543
No 240
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.29 E-value=61 Score=28.83 Aligned_cols=53 Identities=9% Similarity=0.143 Sum_probs=36.4
Q ss_pred cceeEeecCchhHHHHHHh-----CcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcC
Q 044441 243 IGGFLSHCGWGSAVEGMVF-----GVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~~-----GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
++++|+=||=||++.++.. .+|++.+-..+ -+|..- .++.+++.+++.+++++
T Consensus 40 ~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G------------~lGFL~-------~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 40 ANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD------------QLGFYC-------DFHIDDLDKMIQAITKE 97 (264)
T ss_pred ccEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC------------CCeEcc-------cCCHHHHHHHHHHHHcC
Confidence 3459999999999999864 56766664311 133332 35778888888888873
No 241
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=43.91 E-value=29 Score=28.04 Aligned_cols=43 Identities=19% Similarity=0.168 Sum_probs=30.3
Q ss_pred chHHHHHHHhhcCCCEEEEcCCc---hhHHHHHHHcCCCeEEEech
Q 044441 4 AKPAFCNILETLKPTLVMYDLFQ---PWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv~D~~~---~~~~~~A~~lgiP~v~~~~~ 46 (333)
..+.+.+++++.+||+|+.-... -.+..+|.+||.|++.-...
T Consensus 78 ~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~~ 123 (164)
T PF01012_consen 78 YADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVTD 123 (164)
T ss_dssp HHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEEE
Confidence 34567788888999999987432 24667889999999986653
No 242
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=43.78 E-value=2.1e+02 Score=24.67 Aligned_cols=143 Identities=5% Similarity=-0.010 Sum_probs=70.2
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
+++++|..|.++ ..=+..|.+.|..+.++...- .+++.+-. ....+....---+..-+..
T Consensus 26 ~~VLVVGGG~VA-------~RK~~~Ll~~gA~VtVVap~i-----------~~el~~l~--~~~~i~~~~r~~~~~dl~g 85 (223)
T PRK05562 26 IKVLIIGGGKAA-------FIKGKTFLKKGCYVYILSKKF-----------SKEFLDLK--KYGNLKLIKGNYDKEFIKD 85 (223)
T ss_pred CEEEEECCCHHH-------HHHHHHHHhCCCEEEEEcCCC-----------CHHHHHHH--hCCCEEEEeCCCChHHhCC
Confidence 447777666553 222345556777776665432 12222111 1223332221112233554
Q ss_pred cccceeEeecCchhHHHHHH-----hCcceeccccccchhhHHH-----HHhHhCeeeEeecCccCCCcCHHHHHHHHHH
Q 044441 241 GRIGGFLSHCGWGSAVEGMV-----FGVPIIAMPMVYEQSRNAK-----VVVDIGMGMDVPRDKINQRLRREEVARVIKH 310 (333)
Q Consensus 241 ~~~~~~I~hgG~~s~~eal~-----~GvP~i~~P~~~DQ~~na~-----~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~ 310 (333)
+.+ +|..-+-..+.+.++ .|+++.++ |++..+. .+.+-++-+.+..+. ..-.-+..+++.|++
T Consensus 86 ~~L--ViaATdD~~vN~~I~~~a~~~~~lvn~v----d~p~~~dFi~PAiv~rg~l~IaIST~G-~sP~lar~lR~~ie~ 158 (223)
T PRK05562 86 KHL--IVIATDDEKLNNKIRKHCDRLYKLYIDC----SDYKKGLCIIPYQRSTKNFVFALNTKG-GSPKTSVFIGEKVKN 158 (223)
T ss_pred CcE--EEECCCCHHHHHHHHHHHHHcCCeEEEc----CCcccCeEEeeeEEecCCEEEEEECCC-cCcHHHHHHHHHHHH
Confidence 444 788777666666553 35555544 3332222 233445666665422 222334668888888
Q ss_pred HhcCcchHHHHHHHHHHHHHhh
Q 044441 311 VLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 311 vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
++.+ -..+-+.+.++++.++
T Consensus 159 ~l~~--~~~l~~~l~~~R~~vk 178 (223)
T PRK05562 159 FLKK--YDDFIEYVTKIRNKAK 178 (223)
T ss_pred HHHH--HHHHHHHHHHHHHHHH
Confidence 8742 3355555666555543
No 243
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=43.72 E-value=56 Score=30.73 Aligned_cols=44 Identities=9% Similarity=0.069 Sum_probs=24.8
Q ss_pred HHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEE
Q 044441 150 KIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRV 196 (333)
Q Consensus 150 ~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~ 196 (333)
++.+++.... +++++|+ |.... ....+..+.+.|++.+..+.+.
T Consensus 13 ~l~~~~~~~g-~~~livt-~~~~~-~~~~~~~v~~~L~~~~~~~~~f 56 (386)
T cd08191 13 QLPRLAARLG-SRALIVT-DERMA-GTPVFAELVQALAAAGVEVEVF 56 (386)
T ss_pred HHHHHHHHcC-CeEEEEE-Ccchh-hcchHHHHHHHHHHcCCeEEEE
Confidence 3444454433 3356666 43222 2356777888888877776554
No 244
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.61 E-value=46 Score=30.06 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=36.9
Q ss_pred cceeEeecCchhHHHHHH----hCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcC
Q 044441 243 IGGFLSHCGWGSAVEGMV----FGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
++++|+=||=||++.++. +++|++.+-... +|..- .++++++.+++++++++
T Consensus 64 ~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~-------------lGFl~-------~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 64 ADLAIVVGGDGNMLGAARVLARYDIKVIGINRGN-------------LGFLT-------DLDPDNALQQLSDVLEG 119 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCeEEEEECCC-------------CCccc-------ccCHHHHHHHHHHHHcC
Confidence 455999999999999974 367888774311 23322 35678888888888873
No 245
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=43.38 E-value=46 Score=29.51 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=24.2
Q ss_pred HHHHhhcCCCEEEEcC----------C---chhHHHHHHHcCCCeEEEec
Q 044441 9 CNILETLKPTLVMYDL----------F---QPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 9 ~~~l~~~~pD~vv~D~----------~---~~~~~~~A~~lgiP~v~~~~ 45 (333)
..++...+||+||+-. + +.+|+.-|...|||.|.++.
T Consensus 80 ~~~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 80 YDVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HHhcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 3444335899999742 1 23344555668999999985
No 246
>PLN02293 adenine phosphoribosyltransferase
Probab=43.26 E-value=40 Score=28.26 Aligned_cols=40 Identities=10% Similarity=-0.104 Sum_probs=27.8
Q ss_pred hHHHHHHHhhcCCCEEEEc--CCchhHHHHHHHcCCCeEEEe
Q 044441 5 KPAFCNILETLKPTLVMYD--LFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D--~~~~~~~~~A~~lgiP~v~~~ 44 (333)
.+.+.+.+++.++|+|+.= .-.+.|..+|..+|+|++..-
T Consensus 51 ~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~r 92 (187)
T PLN02293 51 IDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFVPLR 92 (187)
T ss_pred HHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEEEEE
Confidence 3445555666678988853 235678889999999987643
No 247
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=43.02 E-value=42 Score=29.21 Aligned_cols=37 Identities=19% Similarity=0.074 Sum_probs=23.2
Q ss_pred HHHhhcCCCEEEEcCCchh--HHH-HHHHcCCCeEEEech
Q 044441 10 NILETLKPTLVMYDLFQPW--AAE-AAYQYHIAAVLFLTI 46 (333)
Q Consensus 10 ~~l~~~~pD~vv~D~~~~~--~~~-~A~~lgiP~v~~~~~ 46 (333)
+.|...+||+||....... ... +-+.+|+|++.+...
T Consensus 68 E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 68 EKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred HHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 3344569999998744322 122 334489999988643
No 248
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=42.79 E-value=46 Score=27.36 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=22.9
Q ss_pred HhhcCCCEEEEcCCchh-HHHHHHHcCCCeEEEec
Q 044441 12 LETLKPTLVMYDLFQPW-AAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 12 l~~~~pD~vv~D~~~~~-~~~~A~~lgiP~v~~~~ 45 (333)
|-+.+||+||....... .....++.|+|++.+..
T Consensus 56 l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~ 90 (195)
T cd01143 56 IVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPA 90 (195)
T ss_pred HhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCC
Confidence 44569999998643222 34455778999888754
No 249
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=42.47 E-value=44 Score=31.34 Aligned_cols=11 Identities=36% Similarity=0.552 Sum_probs=9.1
Q ss_pred hCcceeccccc
Q 044441 261 FGVPIIAMPMV 271 (333)
Q Consensus 261 ~GvP~i~~P~~ 271 (333)
.++|+|.+|..
T Consensus 126 ~~~P~i~IPTt 136 (377)
T cd08176 126 PAVPIVAINTT 136 (377)
T ss_pred CCCCEEEeCCC
Confidence 36899999974
No 250
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=42.40 E-value=71 Score=26.27 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=60.3
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
+.+-.+.+|.++ +++++.++..|.+++..-.... ..... ...++ .+.+..++++.
T Consensus 37 ~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~-----------~~~~~----~~~~~---~~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPK-----------PEEGA----DEFGV---EYVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCH-----------HHHHH----HHTTE---EESSHHHHHHH
T ss_pred CEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCC-----------hhhhc----ccccc---eeeehhhhcch
Confidence 447788888876 4566666677888766644321 10000 01122 45677789998
Q ss_pred cccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCee-eEeecCccCCCcCHHHHHHHHHH
Q 044441 241 GRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMG-MDVPRDKINQRLRREEVARVIKH 310 (333)
Q Consensus 241 ~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g-~~l~~~~~~~~~~~~~l~~ai~~ 310 (333)
+++ ++.|+-.+. ...+..|+..+...+-| +.+... +.+.++.+++.+++++
T Consensus 92 aDi--v~~~~plt~----------------~T~~li~~~~l~~mk~ga~lvN~a-RG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 92 ADI--VSLHLPLTP----------------ETRGLINAEFLAKMKPGAVLVNVA-RGELVDEDALLDALES 143 (178)
T ss_dssp -SE--EEE-SSSST----------------TTTTSBSHHHHHTSTTTEEEEESS-SGGGB-HHHHHHHHHT
T ss_pred hhh--hhhhhcccc----------------ccceeeeeeeeeccccceEEEecc-chhhhhhhHHHHHHhh
Confidence 887 888873221 13567788888888644 333321 1456777777777653
No 251
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=42.35 E-value=65 Score=24.15 Aligned_cols=36 Identities=22% Similarity=0.135 Sum_probs=24.8
Q ss_pred hhccccccceeEeec---CchhHHHH---HHhCcceeccccc
Q 044441 236 KILRHGRIGGFLSHC---GWGSAVEG---MVFGVPIIAMPMV 271 (333)
Q Consensus 236 ~ll~~~~~~~~I~hg---G~~s~~ea---l~~GvP~i~~P~~ 271 (333)
..+..+++-+++-.+ +.||..|. ...|+|++++-..
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 456666664455554 78999996 5789999998543
No 252
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=42.06 E-value=26 Score=33.36 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEE
Q 044441 7 AFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLF 43 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~ 43 (333)
++.+.+++.+||++|...+ +..+|+++|||++.+
T Consensus 349 e~~~~~~~~~pdliig~s~---~~~~a~~lgip~~~~ 382 (415)
T cd01977 349 EFFEILEMLKPDIILTGPR---VGELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHHHhcCCCEEEecCc---cchhhhhcCCCEEec
Confidence 3445667789999998844 335899999999886
No 253
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=42.03 E-value=44 Score=27.21 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=32.0
Q ss_pred hHHHHHHHhhcCCCEEEEcCC---chhHHHHHHHcCCCeEEEechh
Q 044441 5 KPAFCNILETLKPTLVMYDLF---QPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~---~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
.+.+.+++++.+||+|+.-.- -..+..+|.+||.|+++-+...
T Consensus 72 a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~l 117 (168)
T cd01715 72 APALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTAL 117 (168)
T ss_pred HHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEEEE
Confidence 455677778888999997732 3457788999999999866543
No 254
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=41.98 E-value=73 Score=29.43 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred hHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEE
Q 044441 149 TKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLV 228 (333)
Q Consensus 149 ~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 228 (333)
.++.+.+.... +++++|+-++.. ....+.+.+.|+..+..+.+... ...|-..
T Consensus 12 ~~l~~~~~~~~-~r~liv~d~~~~---~~~~~~v~~~l~~~~~~~~~~~~-----------------------~~~~p~~ 64 (345)
T cd08171 12 KKIPEVCEKYG-KKVVVIGGKTAL---AAAKDKIKAALEQSGIEITDFIW-----------------------YGGESTY 64 (345)
T ss_pred HHHHHHHHhcC-CEEEEEeCHHHH---HHHHHHHHHHHHHCCCeEEEEEe-----------------------cCCCCCH
Q ss_pred eccccchhhccccccceeEeecCchhHHHH-----HHhCcceeccc
Q 044441 229 QGWVPQAKILRHGRIGGFLSHCGWGSAVEG-----MVFGVPIIAMP 269 (333)
Q Consensus 229 ~~~~p~~~ll~~~~~~~~I~hgG~~s~~ea-----l~~GvP~i~~P 269 (333)
..-..-.+.....+++.+|.=|| ||++.+ ..+|+|+|.+|
T Consensus 65 ~~v~~~~~~~~~~~~d~iiavGG-Gs~~D~aK~ia~~~~~p~i~VP 109 (345)
T cd08171 65 ENVERLKKNPAVQEADMIFAVGG-GKAIDTVKVLADKLGKPVFTFP 109 (345)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHHHHHcCCCEEEec
No 255
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=41.78 E-value=32 Score=21.37 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 044441 300 RREEVARVIKHVLLQEEGKQIRRKAKEM 327 (333)
Q Consensus 300 ~~~~l~~ai~~vl~~~~~~~~~~~a~~l 327 (333)
+.+++..||..|..+ .-++++.|++.
T Consensus 1 tee~l~~Ai~~v~~g--~~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNG--KMSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTT--SS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 468899999999974 26788888765
No 256
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=41.49 E-value=53 Score=28.57 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=27.3
Q ss_pred HHHHHhhcCCCEEEEcCC--chhHHHHHHH----cCCCeEEEechh
Q 044441 8 FCNILETLKPTLVMYDLF--QPWAAEAAYQ----YHIAAVLFLTIS 47 (333)
Q Consensus 8 l~~~l~~~~pD~vv~D~~--~~~~~~~A~~----lgiP~v~~~~~~ 47 (333)
..+.+++|+||++|+=+. ...|...||. .|+|+|.++-.+
T Consensus 52 ~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p 97 (277)
T PRK00994 52 VKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAP 97 (277)
T ss_pred HHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCC
Confidence 445678999999887643 2334445554 499999987654
No 257
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=41.46 E-value=37 Score=28.52 Aligned_cols=38 Identities=11% Similarity=-0.025 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCCEEEE-c-CCchhHHHHHHHcCCCeEEEe
Q 044441 7 AFCNILETLKPTLVMY-D-LFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~-D-~~~~~~~~~A~~lgiP~v~~~ 44 (333)
.+.+.+++.++|+|+. + .-.+.|..+|..+|+|++..-
T Consensus 41 ~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vR 80 (191)
T TIGR01744 41 EFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFAR 80 (191)
T ss_pred HHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 3344445567999984 3 235778889999999999865
No 258
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=41.45 E-value=47 Score=31.77 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=27.6
Q ss_pred HHHHHHhhcC----CCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 7 AFCNILETLK----PTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 7 ~l~~~l~~~~----pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
++.+.+++.+ ||+||.. .....+|+++|+|++.++
T Consensus 358 ~~~~~i~~~~~~~~~dliig~---s~~~~~a~~~~ip~i~~~ 396 (427)
T cd01971 358 AIGQSLRQSDFKYKPPIIFGS---SWERDLAKELGGKILEVS 396 (427)
T ss_pred HHHHHHHhCCCCCCCCEEEec---hHHHHHHHHcCCCeEEEe
Confidence 5666677664 9999998 456778999999998765
No 259
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=41.40 E-value=1.3e+02 Score=28.05 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=27.4
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecC
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLH 200 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~ 200 (333)
++++++|+.+ .-.-+..+.++|.+.|+.|.+.+...
T Consensus 3 Il~~~~p~~G--Hv~P~l~la~~L~~rGh~V~~~t~~~ 38 (401)
T cd03784 3 VLITTIGSRG--DVQPLVALAWALRAAGHEVRVATPPE 38 (401)
T ss_pred EEEEeCCCcc--hHHHHHHHHHHHHHCCCeEEEeeCHh
Confidence 7888998766 34456678888888999988887653
No 260
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=41.40 E-value=1.8e+02 Score=24.19 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=25.2
Q ss_pred HHHhCcceeccccc----cchhhHHHHHhHhCeeeEee
Q 044441 258 GMVFGVPIIAMPMV----YEQSRNAKVVVDIGMGMDVP 291 (333)
Q Consensus 258 al~~GvP~i~~P~~----~DQ~~na~~~~~~G~g~~l~ 291 (333)
++..++|++++|-. .-+..|...+++.|+-+.-.
T Consensus 108 ~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii~P 145 (181)
T TIGR00421 108 CLKERRKLVLVPRETPLNSIHLENMLRLSRMGAIILPP 145 (181)
T ss_pred HHhcCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEECC
Confidence 57899999999942 23466777888888877553
No 261
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=41.24 E-value=56 Score=30.59 Aligned_cols=43 Identities=9% Similarity=0.080 Sum_probs=21.0
Q ss_pred HHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEE
Q 044441 150 KIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFI 194 (333)
Q Consensus 150 ~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i 194 (333)
++.+++.....+++++|+-.+.. ....++.+...|++.+..+.
T Consensus 16 ~l~~~l~~~~~~~~livt~~~~~--~~~~~~~v~~~L~~~~~~~~ 58 (376)
T cd08193 16 RLGELLAALGAKRVLVVTDPGIL--KAGLIDPLLASLEAAGIEVT 58 (376)
T ss_pred HHHHHHHHcCCCeEEEEcCcchh--hCccHHHHHHHHHHcCCeEE
Confidence 34445544333334444433321 22345666677776666543
No 262
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.85 E-value=61 Score=28.94 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=33.8
Q ss_pred cceeEeecCchhHHHHHH----hCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 243 IGGFLSHCGWGSAVEGMV----FGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
++++|+=||=||++.++. .++|++.+-... +|.... ++++++.+.+.++++
T Consensus 43 ~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G~-------------lGFL~~-------~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 43 AQLAIVIGGDGNMLGRARVLAKYDIPLIGINRGN-------------LGFLTD-------IDPKNAYEQLEACLE 97 (272)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEEeCCC-------------Cccccc-------CCHHHHHHHHHHHHh
Confidence 345999999999998854 368888874311 333332 456666667766665
No 263
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=40.56 E-value=34 Score=32.49 Aligned_cols=35 Identities=14% Similarity=0.031 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEE
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLF 43 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~ 43 (333)
.++.+.++..+||++|.... ...+|+++|||++..
T Consensus 346 ~e~~~~i~~~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 346 RELKKLLKEKKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHHhhcCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 45668888889999999944 456889999999854
No 264
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=40.43 E-value=11 Score=31.11 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=22.7
Q ss_pred cccccceeEeecCchhHHHHHHhCcceecccccc
Q 044441 239 RHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVY 272 (333)
Q Consensus 239 ~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~ 272 (333)
.+..++++|++||...+..... ++|+|-+|..+
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 4456677999999998888877 99999999864
No 265
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=40.06 E-value=45 Score=31.28 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=29.7
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEec
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 45 (333)
..++.+.+++.+||++|.+. .....|+++|+|++.+..
T Consensus 337 ~~~~~~~~~~~~pdl~ig~~---~~~~~~~~~~ip~~~~~~ 374 (399)
T cd00316 337 LEELEELIRELKPDLIIGGS---KGRYIAKKLGIPLVRIGF 374 (399)
T ss_pred HHHHHHHHhhcCCCEEEECC---cHHHHHHHhCCCEEEcCC
Confidence 45677788888999999994 356678889999986543
No 266
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=39.97 E-value=48 Score=27.26 Aligned_cols=33 Identities=9% Similarity=-0.012 Sum_probs=23.1
Q ss_pred hhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhH
Q 044441 13 ETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISA 48 (333)
Q Consensus 13 ~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~ 48 (333)
+....|++|.+. ....+|+++|+|++.+.++..
T Consensus 122 ~~~G~~viVGg~---~~~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 122 KAEGVDVIVGGG---VVCRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp HHTT--EEEESH---HHHHHHHHTTSEEEESS--HH
T ss_pred HHcCCcEEECCH---HHHHHHHHcCCcEEEEEecHH
Confidence 345799999994 457899999999999877543
No 267
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=39.92 E-value=2.6e+02 Score=24.53 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=21.5
Q ss_pred eEeecCchhHHHHHHhCcceecc--ccccchh
Q 044441 246 FLSHCGWGSAVEGMVFGVPIIAM--PMVYEQS 275 (333)
Q Consensus 246 ~I~hgG~~s~~eal~~GvP~i~~--P~~~DQ~ 275 (333)
.|+--+..-+.||+..|+|-+++ +...|-+
T Consensus 153 ~I~G~~g~ll~e~~~r~i~a~~ll~et~~~~P 184 (244)
T COG1938 153 TIVGPSGALLNECLKRGIPALVLLAETFGDRP 184 (244)
T ss_pred eeecccHHHHHHHHHcCCCeEEEeccccCCCC
Confidence 55655677899999999997776 3444443
No 268
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=39.91 E-value=1.5e+02 Score=27.00 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=30.7
Q ss_pred hhccccccceeEeecCchhHHHHHH----hCcceeccccccc
Q 044441 236 KILRHGRIGGFLSHCGWGSAVEGMV----FGVPIIAMPMVYE 273 (333)
Q Consensus 236 ~ll~~~~~~~~I~hgG~~s~~eal~----~GvP~i~~P~~~D 273 (333)
+-|..-.++.+|.=||.+|+..|.. +++|+|++|-.-|
T Consensus 85 ~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTID 126 (301)
T TIGR02482 85 ENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (301)
T ss_pred HHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccccc
Confidence 3566778888999999999877753 7999999997544
No 269
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.85 E-value=56 Score=29.20 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=36.6
Q ss_pred cceeEeecCchhHHHHHH-hCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcC
Q 044441 243 IGGFLSHCGWGSAVEGMV-FGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~-~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
++++|+=||-||++.+.. ..+|++.+-.. .+|..- .++.+++.+++++++++
T Consensus 53 ~D~vi~lGGDGT~L~a~~~~~~PilGIN~G-------------~lGFL~-------~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 53 ADVIITIGGDGTILRTLQRAKGPILGINMG-------------GLGFLT-------EIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCEEEEEcCcHHHHHHHHHcCCCEEEEECC-------------CCccCc-------ccCHHHHHHHHHHHHcC
Confidence 455999999999999986 35677666221 123332 36788888999988873
No 270
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=39.83 E-value=2e+02 Score=23.29 Aligned_cols=133 Identities=18% Similarity=0.209 Sum_probs=65.7
Q ss_pred EEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccccccce
Q 044441 166 VSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHGRIGG 245 (333)
Q Consensus 166 vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~~~~~ 245 (333)
|-+||.. +....+++...|+..|..+-..+... +..|+.+.+ |+.+.. -. .+++
T Consensus 3 IimGS~S--D~~~~~~a~~~L~~~gi~~dv~V~Sa--------HRtp~~~~~-------------~~~~a~-~~--g~~v 56 (156)
T TIGR01162 3 IIMGSDS--DLPTMKKAADILEEFGIPYELRVVSA--------HRTPELMLE-------------YAKEAE-ER--GIKV 56 (156)
T ss_pred EEECcHh--hHHHHHHHHHHHHHcCCCeEEEEECc--------ccCHHHHHH-------------HHHHHH-HC--CCeE
Confidence 4455543 56788888888888887653333321 224433221 211111 01 2344
Q ss_pred eEeecCchhHHHHH---HhCcceeccccccc---hhhHHHHHhH--hC--eeeEeecCccCCCcCHHHHHHHHHHHhcCc
Q 044441 246 FLSHCGWGSAVEGM---VFGVPIIAMPMVYE---QSRNAKVVVD--IG--MGMDVPRDKINQRLRREEVARVIKHVLLQE 315 (333)
Q Consensus 246 ~I~hgG~~s~~eal---~~GvP~i~~P~~~D---Q~~na~~~~~--~G--~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~ 315 (333)
||+-+|...-+-.+ ..-+|+|.+|.... -.+-.....+ .| ++.+.- .+..++.-+...|-.+-
T Consensus 57 iIa~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~vqmP~gvpvatv~I----~~~~nAa~~AaqIl~~~--- 129 (156)
T TIGR01162 57 IIAGAGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMPSGVPVATVAI----GNAGNAALLAAQILGIK--- 129 (156)
T ss_pred EEEeCCccchhHHHHHhccCCCEEEecCCccCCCCHHHHHHHhcCCCCCeeEEEEc----CChhHHHHHHHHHHcCC---
Confidence 88887754333332 33589999998532 1111223344 35 333332 12344555554443322
Q ss_pred chHHHHHHHHHHHHHhh
Q 044441 316 EGKQIRRKAKEMSERMR 332 (333)
Q Consensus 316 ~~~~~~~~a~~l~~~~~ 332 (333)
+++++++.+..++.++
T Consensus 130 -d~~l~~kl~~~r~~~~ 145 (156)
T TIGR01162 130 -DPELAEKLKEYRENQK 145 (156)
T ss_pred -CHHHHHHHHHHHHHHH
Confidence 4667777666665543
No 271
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=39.54 E-value=43 Score=26.95 Aligned_cols=22 Identities=9% Similarity=0.335 Sum_probs=18.8
Q ss_pred cchHHHHHHHhhcCCCEEEEcC
Q 044441 3 DAKPAFCNILETLKPTLVMYDL 24 (333)
Q Consensus 3 ~~~~~l~~~l~~~~pD~vv~D~ 24 (333)
.+.+.+.+++..++||.++.+-
T Consensus 46 ~I~~~l~~~i~~~~Pd~vaiE~ 67 (154)
T cd00529 46 TIYDGLNEVIDQFQPDVVAIER 67 (154)
T ss_pred HHHHHHHHHHHHhCCCEEEEEE
Confidence 4567888999999999999994
No 272
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=39.54 E-value=1e+02 Score=25.03 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=21.1
Q ss_pred ceeEeecCch------hHHHHHHhCcceeccc
Q 044441 244 GGFLSHCGWG------SAVEGMVFGVPIIAMP 269 (333)
Q Consensus 244 ~~~I~hgG~~------s~~eal~~GvP~i~~P 269 (333)
.++++|.|-| .+.+|...++|+|++.
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3478887744 7889999999999995
No 273
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=38.96 E-value=16 Score=35.37 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=29.3
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEE
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLF 43 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~ 43 (333)
..++.+++++.+||++|.... +..+|+++|||++.+
T Consensus 393 ~~el~~~i~~~~pDl~ig~~~---~~~~a~k~gIP~~~~ 428 (466)
T TIGR01282 393 HYEFEEFVEKLKPDLVGSGIK---EKYVFQKMGVPFRQM 428 (466)
T ss_pred HHHHHHHHHHhCCCEEEecCC---ccceeeecCCCcccc
Confidence 347788899999999999854 366899999999654
No 274
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=38.80 E-value=69 Score=28.33 Aligned_cols=40 Identities=13% Similarity=0.043 Sum_probs=29.6
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchh------HHHHHHHcCCCeEEEe
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPW------AAEAAYQYHIAAVLFL 44 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~------~~~~A~~lgiP~v~~~ 44 (333)
...+.+++++.++|+||--.+-++ +..+++.+|||++.+-
T Consensus 54 ~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 54 PQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred HHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 355788999999998775544222 4577889999999975
No 275
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=38.80 E-value=51 Score=31.94 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=28.0
Q ss_pred HHHHHHHhh--cCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 6 PAFCNILET--LKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 6 ~~l~~~l~~--~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
.++.+.+++ .+||++|... .+..+|+++|||++.+.
T Consensus 376 ~~l~~~i~~~~~~~Dliig~s---~~~~~a~k~gip~~~~g 413 (461)
T TIGR02931 376 WELESRIKNQGLELDLILGHS---KGRFISIDYNIPMVRVG 413 (461)
T ss_pred HHHHHHHHhcCCCCCEEEECc---chHHHHHHcCCCEEEec
Confidence 456666774 6899999984 46788999999998763
No 276
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.72 E-value=57 Score=32.55 Aligned_cols=53 Identities=23% Similarity=0.367 Sum_probs=38.1
Q ss_pred ccceeEeecCchhHHHHHH----hCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcC
Q 044441 242 RIGGFLSHCGWGSAVEGMV----FGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 242 ~~~~~I~hgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
.++++|+-||=||++.+.. .++|++.+-... +|... .++.+++.+++++++++
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G~-------------lGFL~-------~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVNGEEIPIICINMGT-------------VGFLT-------EFSKEEIFKAIDSIISG 404 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCCC-------------CCcCc-------ccCHHHHHHHHHHHHcC
Confidence 3566999999999999975 378888874321 23322 35778888888888873
No 277
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=38.67 E-value=76 Score=27.95 Aligned_cols=40 Identities=18% Similarity=0.042 Sum_probs=30.8
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchh------HHHHHHHcCCCeEEEe
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPW------AAEAAYQYHIAAVLFL 44 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~------~~~~A~~lgiP~v~~~ 44 (333)
.+.+.+++++.+.|++|=-.+=++ +..+|+..|||++.+-
T Consensus 55 ~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 55 AEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred HHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 578999999999999884433122 5567899999999975
No 278
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=38.43 E-value=49 Score=31.99 Aligned_cols=36 Identities=14% Similarity=0.001 Sum_probs=27.7
Q ss_pred HHHHHHHhh--cCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 6 PAFCNILET--LKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 6 ~~l~~~l~~--~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
.++.+.+++ .+||++|... ....+|+++|||++.+.
T Consensus 369 ~e~~~~i~~~~~~~dliig~s---~~~~~A~~~gip~~~~g 406 (454)
T cd01973 369 WELEKRIKNKGLELDLILGHS---KGRYIAIDNNIPMVRVG 406 (454)
T ss_pred HHHHHHHHhcCCCCCEEEECC---ccHHHHHHcCCCEEEec
Confidence 455667766 4699999884 45789999999998864
No 279
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=38.02 E-value=41 Score=23.67 Aligned_cols=30 Identities=17% Similarity=0.029 Sum_probs=19.2
Q ss_pred cCCCEEEEc--CCchhHHHHHHHcCCCeEEEe
Q 044441 15 LKPTLVMYD--LFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 15 ~~pD~vv~D--~~~~~~~~~A~~lgiP~v~~~ 44 (333)
.+.--||.+ ....=+..+|+.+|||++.-.
T Consensus 29 ~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 29 QRVAGIVTEEGGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp TTSSEEEESSSSTTSHHHHHHHHTT-EEEEST
T ss_pred hheEEEEEEcCCccchHHHHHHHcCCCEEEee
Confidence 345555555 334456778999999998844
No 280
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=37.84 E-value=47 Score=28.10 Aligned_cols=40 Identities=8% Similarity=0.086 Sum_probs=26.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCc------hhHHHHHHHcCCCeEEEec
Q 044441 6 PAFCNILETLKPTLVMYDLFQ------PWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~------~~~~~~A~~lgiP~v~~~~ 45 (333)
+.+.+++++..||+|+.-.-. ..+..+|.+||.|+++=+.
T Consensus 98 ~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv~ 143 (202)
T cd01714 98 KALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQITYVS 143 (202)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccceEE
Confidence 445666666678888866332 5677788888888766443
No 281
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=37.63 E-value=40 Score=35.79 Aligned_cols=37 Identities=8% Similarity=0.019 Sum_probs=29.8
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
..++.+++++.+||++|.... ...+|+++|||++-..
T Consensus 378 ~~el~~~i~~~~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 378 TAGLLRVMREKMPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred HHHHHHHHHhcCCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 456778889999999999743 4568999999999654
No 282
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=37.50 E-value=1.4e+02 Score=27.01 Aligned_cols=172 Identities=13% Similarity=0.084 Sum_probs=83.2
Q ss_pred eecCcCcCCCCC-CCChhHHHHhhcCCCCCeEEEEEecC---cccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhh
Q 044441 133 VPVGPLVQESIF-KEDDTKIMDWLSQKEPWSVVFVSFGS---EYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIE 208 (333)
Q Consensus 133 ~~vGpl~~~~~~-~~~~~~l~~~l~~~~~~~~v~vs~Gs---~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~ 208 (333)
+|+|-...++.. ...-.++..+..... ++=+-+.. ........+..+.+++++.|..+++.++.....
T Consensus 99 rf~~~~~v~p~~~~~a~~E~er~v~~~g---f~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~----- 170 (293)
T COG2159 99 RFVGFARVDPRDPEAAAEELERRVRELG---FVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGG----- 170 (293)
T ss_pred ceeeeeeeCCCchHHHHHHHHHHHHhcC---ceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCC-----
Confidence 455544333222 223446666665432 33333322 222345567889999999999999977753211
Q ss_pred hcCchhHHHHHHhcCCCeEEecccc---chhhccccccceeEeecC--chhHHHHHH--hCcceeccccccc-----hhh
Q 044441 209 EALPQGFAEEIERNNKGMLVQGWVP---QAKILRHGRIGGFLSHCG--WGSAVEGMV--FGVPIIAMPMVYE-----QSR 276 (333)
Q Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~~~p---~~~ll~~~~~~~~I~hgG--~~s~~eal~--~GvP~i~~P~~~D-----Q~~ 276 (333)
.. .... ...| ..-...++.++.++.|+| ..=..|++. .-.|.+.+=.... +..
T Consensus 171 ----~~-------~~~~----~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a~~~a~~~~nvy~d~s~~~~~~~~~~ 235 (293)
T COG2159 171 ----AG-------LEKG----HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEAIELAYAHPNVYLDTSGVRPKYFAPP 235 (293)
T ss_pred ----cc-------cccC----CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHHHHHHHhCCCceeeeeccccccCChH
Confidence 00 0000 0112 112356779999999999 666666633 3333333222111 113
Q ss_pred HHHHHhHhCeeeEeecCccCCCcCHH-HHHHHHHHHhcC-cchHHHHHHHHHHH
Q 044441 277 NAKVVVDIGMGMDVPRDKINQRLRRE-EVARVIKHVLLQ-EEGKQIRRKAKEMS 328 (333)
Q Consensus 277 na~~~~~~G~g~~l~~~~~~~~~~~~-~l~~ai~~vl~~-~~~~~~~~~a~~l~ 328 (333)
-..++.+.|-=.++-.++ ....+.+ .++.....-+.+ ...+-+.+||+++=
T Consensus 236 ~~~~~~~~~~dkilFGSD-~P~~~~~~~l~~~~~l~l~~e~k~kiL~~NA~rll 288 (293)
T COG2159 236 LLEFLKELGPDKILFGSD-YPAIHPEVWLAELDELGLSEEVKEKILGENAARLL 288 (293)
T ss_pred HHHHHHhcccCeEEecCC-CCCcCHHHHHHHHHhcCCCHHHHHHHHHHhHHHHh
Confidence 344444444444443322 3334444 222222222222 11345788888764
No 283
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=37.46 E-value=85 Score=30.67 Aligned_cols=52 Identities=13% Similarity=0.272 Sum_probs=35.9
Q ss_pred ccceeEeecCchhHHHHHHh----CcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 242 RIGGFLSHCGWGSAVEGMVF----GVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 242 ~~~~~I~hgG~~s~~eal~~----GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
.++++|+=||=||++.|... ++|++.+-.. -+|..- .++.+++.++|.++++
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~G-------------~LGFLt-------~i~~~e~~~~Le~il~ 317 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMG-------------SLGFMT-------PFHSEQYRDCLDAILK 317 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC-------------Ccceec-------ccCHHHHHHHHHHHHc
Confidence 34569999999999999763 5677766211 134332 2567788888888876
No 284
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=37.06 E-value=54 Score=32.73 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=41.4
Q ss_pred hHHHHHHhCcceecccccc-chhhHHH--HHhHhCeeeEeecCccCCCcCHHHHHHHHHHHh----c-C-cchHHHHHHH
Q 044441 254 SAVEGMVFGVPIIAMPMVY-EQSRNAK--VVVDIGMGMDVPRDKINQRLRREEVARVIKHVL----L-Q-EEGKQIRRKA 324 (333)
Q Consensus 254 s~~eal~~GvP~i~~P~~~-DQ~~na~--~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl----~-~-~~~~~~~~~a 324 (333)
|-+||++.|||.|+-=+.+ -++.+-. .-...|+-++-++ ..+.++..+.|.+.| . + .+....|.+|
T Consensus 485 TPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~-----~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~a 559 (633)
T PF05693_consen 485 TPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRR-----DKNYDESVNQLADFLYKFCQLSRRQRIIQRNRA 559 (633)
T ss_dssp HHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SS-----SS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred ChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCC-----CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8899999999999987642 3333221 1234577666653 345555555554444 3 2 2245788888
Q ss_pred HHHHHHh
Q 044441 325 KEMSERM 331 (333)
Q Consensus 325 ~~l~~~~ 331 (333)
+++++.+
T Consensus 560 e~LS~~~ 566 (633)
T PF05693_consen 560 ERLSDLA 566 (633)
T ss_dssp HHHGGGG
T ss_pred HHHHHhC
Confidence 8888754
No 285
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.92 E-value=88 Score=28.42 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=22.9
Q ss_pred cceeEeecCchhHHHHHHh----Ccceecccc
Q 044441 243 IGGFLSHCGWGSAVEGMVF----GVPIIAMPM 270 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~~----GvP~i~~P~ 270 (333)
.+++|+-||-||+++++.. ++|++++..
T Consensus 58 ~d~vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 58 IDLAIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred cCEEEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 3449999999999999753 789888865
No 286
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=36.71 E-value=54 Score=30.79 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=27.5
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEec
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 45 (333)
..++.+++++.+||+++.+ .....+|+++++|++.+..
T Consensus 330 ~~~~~~~l~~~~pdl~ig~---~~~~~~a~~~~~~~~~~~~ 367 (398)
T PF00148_consen 330 PEEIEELLEELKPDLLIGS---SHERYLAKKLGIPLIRIGF 367 (398)
T ss_dssp HHHHHHHHHHHT-SEEEES---HHHHHHHHHTT--EEE-SS
T ss_pred HHHHHHHHHhcCCCEEEec---hhhHHHHHHhCCCeEEEeC
Confidence 4578888899999999999 3477788999888888643
No 287
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=36.33 E-value=48 Score=31.67 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
-++.+++++.+||++|.-.- .+....|.++|+|++.+.
T Consensus 363 ~e~~~~l~~~~pDl~i~~~~-~~~~~~~~~~gip~~~~~ 400 (426)
T cd01972 363 YQFYNLLKRVKPDFIIFRHG-GLFPDATVYLGIPVVPLN 400 (426)
T ss_pred HHHHHHHHHhCCCEEEEcCC-CccHHHHHhcCCCEEecc
Confidence 46788899999999997532 344456688999998863
No 288
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=36.19 E-value=1.2e+02 Score=28.44 Aligned_cols=44 Identities=5% Similarity=-0.005 Sum_probs=25.9
Q ss_pred HHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEE
Q 044441 150 KIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIR 195 (333)
Q Consensus 150 ~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~ 195 (333)
++.++......+++..|+-.+.. ....++.+.+.|...+..+.+
T Consensus 19 ~l~~~~~~~g~~r~liVTd~~~~--~~g~~~~v~~~L~~~~i~~~i 62 (377)
T COG1454 19 ELGEEVKRLGAKRALIVTDRGLA--KLGLLDKVLDSLDAAGIEYEV 62 (377)
T ss_pred HHHHHHHhcCCCceEEEECCccc--cchhHHHHHHHHHhcCCeEEE
Confidence 45555554333446666555433 456778888888877754433
No 289
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=35.91 E-value=74 Score=24.90 Aligned_cols=31 Identities=19% Similarity=0.676 Sum_probs=23.7
Q ss_pred hhccccccceeEeecC-----chhHHHH---HHhCcceecc
Q 044441 236 KILRHGRIGGFLSHCG-----WGSAVEG---MVFGVPIIAM 268 (333)
Q Consensus 236 ~ll~~~~~~~~I~hgG-----~~s~~ea---l~~GvP~i~~ 268 (333)
-++..+++ +|-.=| ||+.+.| ++.|+|+|++
T Consensus 68 ~li~~aDv--VVvrFGekYKQWNaAfDAg~a~AlgKplI~l 106 (141)
T PF11071_consen 68 TLIEKADV--VVVRFGEKYKQWNAAFDAGYAAALGKPLITL 106 (141)
T ss_pred HHHhhCCE--EEEEechHHHHHHHHhhHHHHHHcCCCeEEe
Confidence 45665565 888877 8888776 6789999998
No 290
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=35.86 E-value=87 Score=27.34 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=24.1
Q ss_pred HHHHHhhcCCCEEEEcCC--chhHHHHHHH----cCCCeEEEechh
Q 044441 8 FCNILETLKPTLVMYDLF--QPWAAEAAYQ----YHIAAVLFLTIS 47 (333)
Q Consensus 8 l~~~l~~~~pD~vv~D~~--~~~~~~~A~~----lgiP~v~~~~~~ 47 (333)
..+.+++|+||++|+=+. ...|...||. .|+|+|.++-.+
T Consensus 51 ~~~~~~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p 96 (276)
T PF01993_consen 51 VTKMLKEWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAP 96 (276)
T ss_dssp HHHHHHHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGG
T ss_pred HHHHHHhhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCC
Confidence 345567899998887633 3344555544 599999988655
No 291
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=35.64 E-value=56 Score=26.86 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=31.0
Q ss_pred hHHHHHHHhhcCCCEEEEcCC---chhHHHHHHHcCCCeEEEech
Q 044441 5 KPAFCNILETLKPTLVMYDLF---QPWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~---~~~~~~~A~~lgiP~v~~~~~ 46 (333)
.+.+.+++++.+||+|++-.. -..+..+|.+||.|+++-...
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~~ 124 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISDVTK 124 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcceeEEE
Confidence 345677778888999997733 345778899999998885544
No 292
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=35.41 E-value=66 Score=28.35 Aligned_cols=31 Identities=26% Similarity=0.146 Sum_probs=21.8
Q ss_pred cCCCEEEEcCC-------------chhHHHHHHHcCCCeEEEec
Q 044441 15 LKPTLVMYDLF-------------QPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 15 ~~pD~vv~D~~-------------~~~~~~~A~~lgiP~v~~~~ 45 (333)
.+||+||+-.- +.+|+.-|...|||.|.++.
T Consensus 81 ~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 81 PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 48999997521 23345555678999999985
No 293
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=35.39 E-value=62 Score=27.59 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=25.4
Q ss_pred HHHHHHHhhc--CCCEEEEcCC-------chhHHHHHHHcCCCeEEEech
Q 044441 6 PAFCNILETL--KPTLVMYDLF-------QPWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~--~pD~vv~D~~-------~~~~~~~A~~lgiP~v~~~~~ 46 (333)
|.+.+++++. +||++++|.+ +-.|..++-.+++|+|.+.=.
T Consensus 77 P~~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVAK~ 126 (206)
T PF04493_consen 77 PCILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVAKS 126 (206)
T ss_dssp HHHHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEESS
T ss_pred HHHHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEeCc
Confidence 4555666654 6899999944 334667777889999997644
No 294
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=35.16 E-value=77 Score=26.81 Aligned_cols=41 Identities=15% Similarity=0.348 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCCEEEEc----CCchhHHHHHHHc-----CCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYD----LFQPWAAEAAYQY-----HIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D----~~~~~~~~~A~~l-----giP~v~~~~~ 46 (333)
+++.+.++..+||++|.| ...+.+..+++.+ ++|.+.++..
T Consensus 37 ~~~~~~~~~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 37 DDLAIACDSLRPSVVFINEDCFIHDASNSQRIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred HHHHHHHhccCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCeEEEEECC
Confidence 445566777789999999 3344555555543 4667776543
No 295
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=34.90 E-value=61 Score=31.34 Aligned_cols=35 Identities=17% Similarity=0.052 Sum_probs=26.7
Q ss_pred HHHHHHh-hcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 7 AFCNILE-TLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 7 ~l~~~l~-~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
++.+.+. +.+||++|.... +..+|+++|||++.+.
T Consensus 374 el~~~l~~~~~~dllig~s~---~~~~A~klgip~~~~g 409 (457)
T TIGR02932 374 ELEKRIKAKLDIDLIMGHSK---GRYVAIDANIPMVRVG 409 (457)
T ss_pred HHHHHHhhcCCCCEEEECCc---hHHHHHHcCCCEEEec
Confidence 4555554 568999999853 5788999999998753
No 296
>PRK06270 homoserine dehydrogenase; Provisional
Probab=34.80 E-value=2.9e+02 Score=25.44 Aligned_cols=58 Identities=9% Similarity=0.173 Sum_probs=36.3
Q ss_pred cchhhccccccceeEe------ecC---chhHHHHHHhCcceecc---ccccchhhHHHHHhHhCeeeEe
Q 044441 233 PQAKILRHGRIGGFLS------HCG---WGSAVEGMVFGVPIIAM---PMVYEQSRNAKVVVDIGMGMDV 290 (333)
Q Consensus 233 p~~~ll~~~~~~~~I~------hgG---~~s~~eal~~GvP~i~~---P~~~DQ~~na~~~~~~G~g~~l 290 (333)
...+++...+++++|- |+| ..-+.++|.+|+++|+- |+...-..-.+..++.|..+..
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEE
Confidence 3346676666666766 443 34568999999999994 7644322333334555777765
No 297
>PRK06932 glycerate dehydrogenase; Provisional
Probab=34.63 E-value=1.6e+02 Score=26.87 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=36.7
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
+.+..|.+|.++ +++++.++..|.+++.. .... . . .. ...+.+..++|+.
T Consensus 148 ktvgIiG~G~IG-------~~va~~l~~fg~~V~~~-~~~~-~---------~-----------~~-~~~~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLG-------TEVGRLAQALGMKVLYA-EHKG-A---------S-----------VC-REGYTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHH-------HHHHHHHhcCCCEEEEE-CCCc-c---------c-----------cc-ccccCCHHHHHHh
Confidence 448899999887 34555556677776543 2110 0 0 00 1135667788998
Q ss_pred cccceeEeecCch
Q 044441 241 GRIGGFLSHCGWG 253 (333)
Q Consensus 241 ~~~~~~I~hgG~~ 253 (333)
+++ ++.|+-.+
T Consensus 198 sDi--v~l~~Plt 208 (314)
T PRK06932 198 ADI--VTLHCPLT 208 (314)
T ss_pred CCE--EEEcCCCC
Confidence 887 88888644
No 298
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=34.48 E-value=1.1e+02 Score=28.40 Aligned_cols=89 Identities=19% Similarity=0.274 Sum_probs=58.8
Q ss_pred CCeEEeccccchhhc-cccccceeEeecCch----hHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCC
Q 044441 224 KGMLVQGWVPQAKIL-RHGRIGGFLSHCGWG----SAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQR 298 (333)
Q Consensus 224 ~~~~~~~~~p~~~ll-~~~~~~~~I~hgG~~----s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~ 298 (333)
....+.+..+..+.| +|.++ +|+|==-| .-+|+||-|-|+| +|+..+.+ +|...+ .
T Consensus 253 gkasfegR~~~p~fla~~tD~--VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l~d--~GYYY~------~ 313 (364)
T PF10933_consen 253 GKASFEGRFDFPDFLAQHTDA--VVSHQWENPLNYLYYDALYGGYPLV---------HNSPLLKD--VGYYYP------D 313 (364)
T ss_pred CeeEEeeecChHHHHHhCCCE--EEeccccchhhHHHHHHHhcCCCcc---------cCcchhcc--cCcCCC------C
Confidence 345555666665544 45555 99995222 5689999999998 57777776 677663 4
Q ss_pred cCHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHh
Q 044441 299 LRREEVARVIKHVLL--QEEGKQIRRKAKEMSERM 331 (333)
Q Consensus 299 ~~~~~l~~ai~~vl~--~~~~~~~~~~a~~l~~~~ 331 (333)
....+=++++.++.. |++-+.|+++|+++-+.+
T Consensus 314 fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~ 348 (364)
T PF10933_consen 314 FDAFEGARQLLRAIREHDADLDAYRARARRLLDRL 348 (364)
T ss_pred ccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhh
Confidence 555555555555554 344679999999876553
No 299
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.40 E-value=83 Score=22.93 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=24.5
Q ss_pred CCCEEE--EcCC----chhHHHHHHHcCCCeEEEechhHH
Q 044441 16 KPTLVM--YDLF----QPWAAEAAYQYHIAAVLFLTISAV 49 (333)
Q Consensus 16 ~pD~vv--~D~~----~~~~~~~A~~lgiP~v~~~~~~~~ 49 (333)
++|+|| .|.. +..+...|++.|+|++.....+..
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 678776 5532 455778889999999998755543
No 300
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=34.39 E-value=76 Score=28.01 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=22.4
Q ss_pred cCCCEEEEcC----------C---chhHHHHHHHcCCCeEEEech
Q 044441 15 LKPTLVMYDL----------F---QPWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 15 ~~pD~vv~D~----------~---~~~~~~~A~~lgiP~v~~~~~ 46 (333)
.+||+||+-. + +.+|+.-|...|||.|.++..
T Consensus 86 ~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~~ 130 (253)
T PRK13933 86 DNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSAD 130 (253)
T ss_pred CCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEec
Confidence 5899999752 1 234555556789999999853
No 301
>PRK11914 diacylglycerol kinase; Reviewed
Probab=34.37 E-value=1.1e+02 Score=27.66 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=22.4
Q ss_pred ceeEeecCchhHHHHH----HhCcceecccc
Q 044441 244 GGFLSHCGWGSAVEGM----VFGVPIIAMPM 270 (333)
Q Consensus 244 ~~~I~hgG~~s~~eal----~~GvP~i~~P~ 270 (333)
+.+|.-||=||+.|++ ..++|+-++|.
T Consensus 66 d~vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 66 DALVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred CEEEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 4499999999999987 34788999996
No 302
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=34.33 E-value=53 Score=32.32 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=25.1
Q ss_pred HHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEE
Q 044441 9 CNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLF 43 (333)
Q Consensus 9 ~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~ 43 (333)
.+.+++.+||++|.... +..+|+++|||++-.
T Consensus 391 ~~~l~~~~~Dllig~s~---~~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 391 LEAMEMLKPDIILTGKR---PGEVSKKMRVPYLNA 422 (513)
T ss_pred HHHHHhcCCCEEEecCc---cchhHhhcCCCEEEc
Confidence 35678889999999855 236899999999764
No 303
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=34.28 E-value=2e+02 Score=25.67 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=19.9
Q ss_pred ceeEeecCchhHHHHHHh-----Ccceec-ccc
Q 044441 244 GGFLSHCGWGSAVEGMVF-----GVPIIA-MPM 270 (333)
Q Consensus 244 ~~~I~hgG~~s~~eal~~-----GvP~i~-~P~ 270 (333)
+.+|.-||=||+.|++.. ..|.++ +|.
T Consensus 59 d~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 59 DTVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CEEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 449999999999997632 345555 786
No 304
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=34.16 E-value=91 Score=23.22 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=30.2
Q ss_pred hHHHHHHHhhcCCCEEEEcCC-------chhHHHHHHHcCCCeEEE
Q 044441 5 KPAFCNILETLKPTLVMYDLF-------QPWAAEAAYQYHIAAVLF 43 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~-------~~~~~~~A~~lgiP~v~~ 43 (333)
.+.+.+.+++.++|+||.-+- .+.-...|-..|||+++-
T Consensus 56 ~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 56 RPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFTT 101 (110)
T ss_pred chhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEec
Confidence 367888899999999998421 355667788899999963
No 305
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=34.01 E-value=63 Score=28.68 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=24.1
Q ss_pred eEEEEEecCcccCCH-HHHHHHHHHHhc--CCCcEEEEEecC
Q 044441 162 SVVFVSFGSEYFLSK-DEMHEIASGLLL--SEVSFIRVLRLH 200 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~-~~~~~~~~~l~~--~~~~~i~~~~~~ 200 (333)
-+++|||||...... ..+..+.+.+++ .+..+-|..++.
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 378999999876544 377777777765 477888887643
No 306
>PRK08236 hypothetical protein; Provisional
Probab=33.82 E-value=61 Score=27.71 Aligned_cols=39 Identities=23% Similarity=0.107 Sum_probs=30.4
Q ss_pred HHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechh
Q 044441 9 CNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 9 ~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
.+.+.+.-|+.++.|+=..+...+|+.+|||++.+-..+
T Consensus 146 ~~~l~~~~~~a~~vdMEgaAvA~vc~~~~vPf~~iR~IS 184 (212)
T PRK08236 146 AAALAARHPDAVAEAMEGFGVAEAAAAAGLPVLELRAIS 184 (212)
T ss_pred HHHHHHHCCCceeehhHHHHHHHHHHHhCCCEEEEEEec
Confidence 344444447999999888888899999999999976554
No 307
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=33.40 E-value=1.6e+02 Score=27.13 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=59.9
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhcccc
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHG 241 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~ 241 (333)
.+=.+.+|.++ ++++.-++..|.+++..-.... |+ .. ...+ ..|++..++|..+
T Consensus 148 tvGIiG~GrIG-------~avA~r~~~Fgm~v~y~~~~~~----------~~-~~-----~~~~---~~y~~l~ell~~s 201 (324)
T COG1052 148 TLGIIGLGRIG-------QAVARRLKGFGMKVLYYDRSPN----------PE-AE-----KELG---ARYVDLDELLAES 201 (324)
T ss_pred EEEEECCCHHH-------HHHHHHHhcCCCEEEEECCCCC----------hH-HH-----hhcC---ceeccHHHHHHhC
Confidence 36677777776 3444445556777666543221 11 00 0011 3577788999988
Q ss_pred ccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHH
Q 044441 242 RIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKH 310 (333)
Q Consensus 242 ~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~ 310 (333)
++ ++-||..+-- ...-.|+..++..+-|..+---.+...++.+.+.+++++
T Consensus 202 Di--i~l~~Plt~~----------------T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~ 252 (324)
T COG1052 202 DI--ISLHCPLTPE----------------TRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKS 252 (324)
T ss_pred CE--EEEeCCCChH----------------HhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 88 9989843311 234558888888766555522122455667777766654
No 308
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.25 E-value=4.1e+02 Score=24.87 Aligned_cols=146 Identities=18% Similarity=0.315 Sum_probs=86.5
Q ss_pred CCCeEEEEEecCcccCCHHHHHHHHHHHhc---------CCC-cEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeE-
Q 044441 159 EPWSVVFVSFGSEYFLSKDEMHEIASGLLL---------SEV-SFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGML- 227 (333)
Q Consensus 159 ~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~---------~~~-~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~- 227 (333)
+.+|.++||.-|-+ +.+.+..+++|+.. .+. +.+..+++. +++-+.+.+.+ ...++.
T Consensus 252 ~~~pallvsSTswT--pDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGK--------GPlkE~Y~~~I--~~~~~~~ 319 (444)
T KOG2941|consen 252 PERPALLVSSTSWT--PDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGK--------GPLKEKYSQEI--HEKNLQH 319 (444)
T ss_pred cCCCeEEEecCCCC--CcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCC--------CchhHHHHHHH--HHhcccc
Confidence 45778888765544 45677777888762 122 344544432 22334444444 222322
Q ss_pred ---Eeccccch---hhccccccceeEeecCch-----hHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccC
Q 044441 228 ---VQGWVPQA---KILRHGRIGGFLSHCGWG-----SAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKIN 296 (333)
Q Consensus 228 ---~~~~~p~~---~ll~~~~~~~~I~hgG~~-----s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~ 296 (333)
...|+.-. .+|+.++.++.+|-.-.| -|..-.-+|+|++.+-+- ---..|++.--|+...
T Consensus 320 v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fk----cl~ELVkh~eNGlvF~----- 390 (444)
T KOG2941|consen 320 VQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFK----CLDELVKHGENGLVFE----- 390 (444)
T ss_pred eeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecch----hHHHHHhcCCCceEec-----
Confidence 23566443 588999998888877665 356667788888877331 1122333335677774
Q ss_pred CCcCHHHHHHHHHHHhcC-----cchHHHHHHHHHHH
Q 044441 297 QRLRREEVARVIKHVLLQ-----EEGKQIRRKAKEMS 328 (333)
Q Consensus 297 ~~~~~~~l~~ai~~vl~~-----~~~~~~~~~a~~l~ 328 (333)
+.+++++.+.-++++ +.-.++++|+++-+
T Consensus 391 ---Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~ 424 (444)
T KOG2941|consen 391 ---DSEELAEQLQMLFKNFPDNADELNQLKKNLREEQ 424 (444)
T ss_pred ---cHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Confidence 788888888888772 11246777776653
No 309
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=33.24 E-value=3.1e+02 Score=23.51 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=30.2
Q ss_pred eeEeecC-----chhHHHHHHhCcceeccccccc--hhhHHHHHhHhCeeeEe
Q 044441 245 GFLSHCG-----WGSAVEGMVFGVPIIAMPMVYE--QSRNAKVVVDIGMGMDV 290 (333)
Q Consensus 245 ~~I~hgG-----~~s~~eal~~GvP~i~~P~~~D--Q~~na~~~~~~G~g~~l 290 (333)
++|.-+| ..++..|+..|+|+.++|-..+ +..-...+-+.|+....
T Consensus 159 vivve~~~~sGtl~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li~~GA~~i~ 211 (220)
T TIGR00732 159 VLVVEAPLKSGALITARYALEQGREVFAYPGDLNSPESDGCHKLIEQGAALIT 211 (220)
T ss_pred EEEEECCCCCchHHHHHHHHHhCCcEEEEcCCCCCccchHHHHHHHCCCEEEC
Confidence 3555544 4567777899999999997543 33445566677865443
No 310
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=33.03 E-value=80 Score=24.19 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=39.3
Q ss_pred HHhCcceeccccccchhhHHHHHhH----------hCeeeEeecCccCCCcCHHHHHHHHHHHh
Q 044441 259 MVFGVPIIAMPMVYEQSRNAKVVVD----------IGMGMDVPRDKINQRLRREEVARVIKHVL 312 (333)
Q Consensus 259 l~~GvP~i~~P~~~DQ~~na~~~~~----------~G~g~~l~~~~~~~~~~~~~l~~ai~~vl 312 (333)
+.|+.++-..|..+|.-.|+-|+.+ .|.+-+..++. --..+.|++..+|+-+.
T Consensus 60 ~CHa~~~~GAPk~GdkAaW~PRiaqG~dtL~~hai~GfnAMPpkG~-ca~cSdDe~kAaId~M~ 122 (126)
T COG3245 60 ACHAAGLPGAPKTGDKAAWAPRIAQGKDTLLDHAINGFNAMPPKGG-CADCSDDEVKAAIDFMA 122 (126)
T ss_pred HhccCCCCCCCCCCchhhhhhHHHhchHHHHHHHhccccCCCCCCC-cCCCCHHHHHHHHHHHH
Confidence 4677888899999999999999877 24544444432 23478999999996654
No 311
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=32.91 E-value=62 Score=27.08 Aligned_cols=38 Identities=8% Similarity=-0.025 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCCEEEEcC--CchhHHHHHHHcCCCeEEEe
Q 044441 7 AFCNILETLKPTLVMYDL--FQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~--~~~~~~~~A~~lgiP~v~~~ 44 (333)
.+.+.+++.++|.|+.=. -.+.|..+|..+|+|++..-
T Consensus 64 ~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vR 103 (187)
T PRK13810 64 QAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVR 103 (187)
T ss_pred HHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEe
Confidence 344445566899999652 35678889999999988754
No 312
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=32.83 E-value=84 Score=27.83 Aligned_cols=31 Identities=23% Similarity=0.154 Sum_probs=22.0
Q ss_pred cCCCEEEEcCC-------------chhHHHHHHHcCCCeEEEec
Q 044441 15 LKPTLVMYDLF-------------QPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 15 ~~pD~vv~D~~-------------~~~~~~~A~~lgiP~v~~~~ 45 (333)
.+||+||+-.. +.+|+.-|..+|||.|.++.
T Consensus 90 ~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 90 EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 47999997521 33445555678999999985
No 313
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=32.74 E-value=4.4e+02 Score=25.02 Aligned_cols=141 Identities=11% Similarity=0.125 Sum_probs=75.6
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEecc-------cc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGW-------VP 233 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~p 233 (333)
+.+++.-.||+.. -....++..|.+.|..+-..++..... -+...-.+.+ ....+...-| ..
T Consensus 7 k~IllgvTGsiaa---~k~~~lv~~L~~~g~~V~vv~T~~A~~------fi~~~~l~~l--~~~~V~~~~~~~~~~~~~~ 75 (399)
T PRK05579 7 KRIVLGVSGGIAA---YKALELVRRLRKAGADVRVVMTEAAKK------FVTPLTFQAL--SGNPVSTDLWDPAAEAAMG 75 (399)
T ss_pred CeEEEEEeCHHHH---HHHHHHHHHHHhCCCEEEEEECHhHHH------HHhHHHHHHh--hCCceEccccccccCCCcc
Confidence 3466666677643 244556677777787776555532111 1111111111 1112332212 23
Q ss_pred chhhccccccceeEeecCchhHHH-------------HHHhCcceecccccc----c---hhhHHHHHhHhCeeeEeec-
Q 044441 234 QAKILRHGRIGGFLSHCGWGSAVE-------------GMVFGVPIIAMPMVY----E---QSRNAKVVVDIGMGMDVPR- 292 (333)
Q Consensus 234 ~~~ll~~~~~~~~I~hgG~~s~~e-------------al~~GvP~i~~P~~~----D---Q~~na~~~~~~G~g~~l~~- 292 (333)
+.++...+++ .+|.-+-+||+.. ++.+++|++++|-.. . ...|..++.+.|+-+.-..
T Consensus 76 hi~l~~~aD~-~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~ 154 (399)
T PRK05579 76 HIELAKWADL-VLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPAS 154 (399)
T ss_pred hhhcccccCE-EEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCC
Confidence 4455554553 3566666665543 356799999999432 2 3457777888776655431
Q ss_pred -----Cc--cCCCcCHHHHHHHHHHHhc
Q 044441 293 -----DK--INQRLRREEVARVIKHVLL 313 (333)
Q Consensus 293 -----~~--~~~~~~~~~l~~ai~~vl~ 313 (333)
++ ...-.+.++|...+.+.+.
T Consensus 155 g~la~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 155 GRLACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred ccccCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 00 1234677888888877764
No 314
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=32.47 E-value=1.1e+02 Score=28.57 Aligned_cols=45 Identities=7% Similarity=0.024 Sum_probs=22.3
Q ss_pred HHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEE
Q 044441 150 KIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRV 196 (333)
Q Consensus 150 ~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~ 196 (333)
++.+.+.....+.+++|+-++... ......+.+.|+..+..+.+.
T Consensus 13 ~l~~~l~~~~~~~~lvv~~~~~~~--~~~~~~v~~~L~~~~~~~~~~ 57 (370)
T cd08551 13 KLGEEIKNLGGRKALIVTDPGLVK--TGVLDKVIDSLKEAGIEVVIF 57 (370)
T ss_pred HHHHHHHHcCCCeEEEEeCcchhh--CccHHHHHHHHHHcCCeEEEE
Confidence 344444443323345454333221 355666777777766665443
No 315
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=32.31 E-value=56 Score=30.84 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=27.8
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
.++.+.+++.+||++|.... ....|+++|+|++-..
T Consensus 345 ~~~~~~~~~~~pdl~ig~~~---~~~~a~~~gip~~~~~ 380 (406)
T cd01967 345 LELEELVEKLKPDLILSGIK---EKYVAQKLGIPFLDLH 380 (406)
T ss_pred HHHHHHHHhcCCCEEEeCCc---chHHHHhcCCCEEecC
Confidence 45666778889999998843 4568899999997654
No 316
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=32.22 E-value=1.1e+02 Score=29.22 Aligned_cols=43 Identities=12% Similarity=-0.009 Sum_probs=20.0
Q ss_pred HHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEE
Q 044441 151 IMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIR 195 (333)
Q Consensus 151 l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~ 195 (333)
+.+++.....+++++|+-.+.. ....+..+.+.|++.+..+.+
T Consensus 14 l~~~l~~~g~~~vlivt~~~~~--~~g~~~~v~~~L~~~gi~~~~ 56 (414)
T cd08190 14 VGMDLKNLGARRVCLVTDPNLA--QLPPVKVVLDSLEAAGINFEV 56 (414)
T ss_pred HHHHHHHcCCCeEEEEECcchh--hcchHHHHHHHHHHcCCcEEE
Confidence 3334443332335555443322 233456666666666655443
No 317
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=31.93 E-value=94 Score=29.10 Aligned_cols=44 Identities=9% Similarity=0.047 Sum_probs=20.8
Q ss_pred HHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEE
Q 044441 151 IMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRV 196 (333)
Q Consensus 151 l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~ 196 (333)
+...+.....+++++|+-++.. .......+.+.|...+..+.+.
T Consensus 19 l~~~l~~~g~~~~livt~~~~~--~~~~~~~v~~~L~~~~~~~~~~ 62 (377)
T cd08188 19 AGRYARRLGAKKVLLVSDPGVI--KAGWVDRVIESLEEAGLEYVVF 62 (377)
T ss_pred HHHHHHHcCCCeEEEEeCcchh--hCccHHHHHHHHHHcCCeEEEe
Confidence 3344444332335555433321 1234556667776666665443
No 318
>PRK13337 putative lipid kinase; Reviewed
Probab=31.91 E-value=2.2e+02 Score=25.62 Aligned_cols=28 Identities=14% Similarity=0.003 Sum_probs=21.7
Q ss_pred ceeEeecCchhHHHHHHh------Ccceeccccc
Q 044441 244 GGFLSHCGWGSAVEGMVF------GVPIIAMPMV 271 (333)
Q Consensus 244 ~~~I~hgG~~s~~eal~~------GvP~i~~P~~ 271 (333)
+.+|..||=||+.|++.. ..|+-++|..
T Consensus 59 d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 59 DLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred CEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECCc
Confidence 459999999999998752 3477788963
No 319
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=31.84 E-value=2.8e+02 Score=25.78 Aligned_cols=25 Identities=8% Similarity=0.121 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEecC
Q 044441 176 KDEMHEIASGLLLSEVSFIRVLRLH 200 (333)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~i~~~~~~ 200 (333)
+.++..++.+|.+.|+.+...+...
T Consensus 10 p~~~~~la~~L~~~G~~v~~~~~~~ 34 (396)
T cd03818 10 PGQFRHLAPALAAQGHEVVFLTEPN 34 (396)
T ss_pred chhHHHHHHHHHHCCCEEEEEecCC
Confidence 4677889999988888877666544
No 320
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=31.52 E-value=69 Score=27.06 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=25.3
Q ss_pred CCCEEE-EcC-CchhHHHHHHHcCCCeEEEechhH
Q 044441 16 KPTLVM-YDL-FQPWAAEAAYQYHIAAVLFLTISA 48 (333)
Q Consensus 16 ~pD~vv-~D~-~~~~~~~~A~~lgiP~v~~~~~~~ 48 (333)
.||+|| .|. ...-+..=|.++|||.|.++.+..
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTDN 142 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCC
Confidence 588776 553 456678889999999999987653
No 321
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=31.30 E-value=89 Score=22.32 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCEEEEcCC---------chhHHHHHHHcCCCeEE
Q 044441 6 PAFCNILETLKPTLVMYDLF---------QPWAAEAAYQYHIAAVL 42 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~---------~~~~~~~A~~lgiP~v~ 42 (333)
+.+.+.++..+.|+||.-.. .+.-..+|...+||+++
T Consensus 45 ~~i~~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~T 90 (90)
T smart00851 45 LAILDLIKNGEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGAT 90 (90)
T ss_pred HHHHHHhcCCCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCeeC
Confidence 55788889999999998532 23445668888999763
No 322
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=31.22 E-value=89 Score=27.60 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=21.7
Q ss_pred cCCCEEEEcC---------C----chhHHHHHHHcCCCeEEEec
Q 044441 15 LKPTLVMYDL---------F----QPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 15 ~~pD~vv~D~---------~----~~~~~~~A~~lgiP~v~~~~ 45 (333)
.+||+||+-. . +.+|+.-|...|||.|.++.
T Consensus 85 ~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 85 KKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred CCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 4799999752 1 23344555668999999985
No 323
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=31.13 E-value=71 Score=30.86 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=26.0
Q ss_pred HHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 7 AFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
++.+.++ +||++|.+. ....+|+++|||++.+.
T Consensus 364 ~le~~~~--~~dliig~s---~~~~~a~~~gip~~~~g 396 (455)
T PRK14476 364 DLEELAE--GADLLITNS---HGRQAAERLGIPLLRVG 396 (455)
T ss_pred HHHHhcc--CCCEEEECc---hhHHHHHHcCCCEEEec
Confidence 5566665 899999994 45678999999998754
No 324
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=31.03 E-value=48 Score=26.59 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=26.6
Q ss_pred cchHHHHHHHhhcCCCEEEEcCCchh---------------HHHHHHHcCCCeEEEechh
Q 044441 3 DAKPAFCNILETLKPTLVMYDLFQPW---------------AAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 3 ~~~~~l~~~l~~~~pD~vv~D~~~~~---------------~~~~A~~lgiP~v~~~~~~ 47 (333)
.+.+.+.+++++++||.++.+..++. ...++.+.|+|+..+.+..
T Consensus 45 ~I~~~l~~li~~~~P~~vaiE~~f~~~n~~s~~~l~~arGvi~l~~~~~~i~v~~y~P~~ 104 (149)
T PF02075_consen 45 EIYEELEELIEEYNPDEVAIEEIFFGKNPKSALKLGQARGVILLAAAQRGIPVFEYTPSE 104 (149)
T ss_dssp HHHHHHHHHHHHH--SEEEEEE-S----HHHHHHHHHHHHHHHHHHHTTT--EEEEEHHH
T ss_pred HHHHHHHHHHHhhCCCEEEeehhhhccCHHHHHHHHHHHHHHHHHHHHcCCeEEEECHHH
Confidence 35678899999999999999832221 1234466788877776554
No 325
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=30.98 E-value=69 Score=29.45 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=25.7
Q ss_pred CCCEEE-Ec-CCchhHHHHHHHcCCCeEEEechhH
Q 044441 16 KPTLVM-YD-LFQPWAAEAAYQYHIAAVLFLTISA 48 (333)
Q Consensus 16 ~pD~vv-~D-~~~~~~~~~A~~lgiP~v~~~~~~~ 48 (333)
.||+|| .| .....+..=|.++|||.|.+.-+.+
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 599777 45 3466788889999999999886653
No 326
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=30.90 E-value=72 Score=27.17 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=25.5
Q ss_pred CCCEEE-EcC-CchhHHHHHHHcCCCeEEEechhH
Q 044441 16 KPTLVM-YDL-FQPWAAEAAYQYHIAAVLFLTISA 48 (333)
Q Consensus 16 ~pD~vv-~D~-~~~~~~~~A~~lgiP~v~~~~~~~ 48 (333)
.||+|| .|. ...-+..=|.++|||.|.++.+..
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCC
Confidence 699777 553 456677888999999999987653
No 327
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=30.50 E-value=80 Score=32.46 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=32.2
Q ss_pred cCCCEEEEc-CCchhHHHHHHHcCCCeEEEechhHHHHHhh
Q 044441 15 LKPTLVMYD-LFQPWAAEAAYQYHIAAVLFLTISAVAGSYL 54 (333)
Q Consensus 15 ~~pD~vv~D-~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 54 (333)
.+||+|++| ...+.....|+++++|.+.+....+...+.+
T Consensus 414 ~~p~~i~~D~HP~y~st~~a~~~~~~~~~vQHH~AH~~a~m 454 (711)
T TIGR00143 414 FEPQDIVCDLHPQYNTTQYAEELSLPVLRVQHHHAHALAVM 454 (711)
T ss_pred CCCCEEEEeCCCCchhHHHHHHcCCCeeeeeHHHHHHHHHH
Confidence 489999999 4467777889999999999988777665543
No 328
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=30.35 E-value=66 Score=28.66 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=26.7
Q ss_pred HHHhhcCCCEEEEc--CCchhHHHHHHHcCCCeEEEec
Q 044441 10 NILETLKPTLVMYD--LFQPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 10 ~~l~~~~pD~vv~D--~~~~~~~~~A~~lgiP~v~~~~ 45 (333)
+.+++.++|+|+.= .-.+.|..+|..+|+|++..--
T Consensus 122 ~~~~~~~iD~VvgvetkGIpLA~avA~~L~vp~vivRK 159 (268)
T TIGR01743 122 SVFAEREIDAVMTVATKGIPLAYAVASVLNVPLVIVRK 159 (268)
T ss_pred HHhcCCCCCEEEEEccchHHHHHHHHHHHCCCEEEEEE
Confidence 33445578998854 3367888999999999988653
No 329
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.18 E-value=83 Score=25.68 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=25.2
Q ss_pred cCCCEEEEcCC----------chhHHHHHHHcCCCeEEEechhH
Q 044441 15 LKPTLVMYDLF----------QPWAAEAAYQYHIAAVLFLTISA 48 (333)
Q Consensus 15 ~~pD~vv~D~~----------~~~~~~~A~~lgiP~v~~~~~~~ 48 (333)
..||+|++..- .--+..+|+++|+|++-.+.+..
T Consensus 123 E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 123 ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 47999997632 12367789999999999876543
No 330
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=29.95 E-value=87 Score=28.93 Aligned_cols=40 Identities=25% Similarity=0.264 Sum_probs=26.1
Q ss_pred HHHHHHhhcCCCEEEEc--C-Cchh----------HHHHHHHcCCCeEEEech
Q 044441 7 AFCNILETLKPTLVMYD--L-FQPW----------AAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D--~-~~~~----------~~~~A~~lgiP~v~~~~~ 46 (333)
-+.+.|+.++||+||.- . +... |..=|...|||++++.-.
T Consensus 91 F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGN 143 (379)
T KOG1432|consen 91 FVSRVLASEKPDLVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLGN 143 (379)
T ss_pred HHHHHHhccCCCEEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEecc
Confidence 46778899999999954 2 2212 222234579999997644
No 331
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=29.84 E-value=3.1e+02 Score=24.37 Aligned_cols=31 Identities=16% Similarity=0.364 Sum_probs=21.7
Q ss_pred hhccccccceeEeecCchhHHHHHHhCcceeccc
Q 044441 236 KILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMP 269 (333)
Q Consensus 236 ~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P 269 (333)
.+++++++ +|+-= .-++.-|+.+|+|.+.+.
T Consensus 246 ~~i~~~~~--vI~~R-lH~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 246 GLFASARL--VIGMR-LHALILAAAAGVPFVALS 276 (298)
T ss_pred HHHhhCCE--EEEec-hHHHHHHHHcCCCEEEee
Confidence 45665554 77643 345667888999999884
No 332
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=29.77 E-value=64 Score=28.17 Aligned_cols=33 Identities=18% Similarity=0.066 Sum_probs=24.5
Q ss_pred HhhcCCCEEEEc--CCchhHHHHHHHcCCCeEEEe
Q 044441 12 LETLKPTLVMYD--LFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 12 l~~~~pD~vv~D--~~~~~~~~~A~~lgiP~v~~~ 44 (333)
+++..+|+|+.= .-.+.|..+|..+|+|++..-
T Consensus 107 ~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~R 141 (238)
T PRK08558 107 FMGLRVDVVLTAATDGIPLAVAIASYFGADLVYAK 141 (238)
T ss_pred ccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEEE
Confidence 344578998843 345778889999999988753
No 333
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=29.72 E-value=97 Score=27.18 Aligned_cols=32 Identities=22% Similarity=0.065 Sum_probs=22.4
Q ss_pred cCCCEEEEcCC-------------chhHHHHHHHcCCCeEEEech
Q 044441 15 LKPTLVMYDLF-------------QPWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 15 ~~pD~vv~D~~-------------~~~~~~~A~~lgiP~v~~~~~ 46 (333)
.+||+||+-.- +.+|+.-|...|||.|.++..
T Consensus 85 ~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~ 129 (244)
T TIGR00087 85 EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQ 129 (244)
T ss_pred CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEec
Confidence 47999997521 234555566789999999853
No 334
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=29.50 E-value=1.4e+02 Score=21.93 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=25.6
Q ss_pred hHHHHHHHhhcCCCEEEEcC-Cchh-HHHHHHHcCCCeE
Q 044441 5 KPAFCNILETLKPTLVMYDL-FQPW-AAEAAYQYHIAAV 41 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~-~~~~-~~~~A~~lgiP~v 41 (333)
..++.++++...+|+||+|. .++. ...+.+.+|++++
T Consensus 46 ~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~~V~ 84 (95)
T PF13167_consen 46 VEEIKELIEELDADLVVFDNELSPSQQRNLEKALGVKVI 84 (95)
T ss_pred HHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHCCeee
Confidence 46777788888899999983 4444 2356666777654
No 335
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=29.36 E-value=1e+02 Score=28.96 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=17.1
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEE
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRV 196 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~ 196 (333)
+++|+-++... ....+..+.+.|+..+..+.+.
T Consensus 31 ~livt~~~~~~-~~~~~~~v~~~L~~~g~~~~~~ 63 (382)
T cd08187 31 VLLVYGGGSIK-KNGLYDRVIASLKEAGIEVVEL 63 (382)
T ss_pred EEEEeCCcHHH-hcCcHHHHHHHHHHcCCeEEEE
Confidence 55554433221 1234566667777766665544
No 336
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=29.29 E-value=50 Score=27.07 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=18.8
Q ss_pred HHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 277 NAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 277 na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
.+..=++-|+|+.+ |+|+|.++|.++++
T Consensus 104 ~~~Fe~~cGVGV~V---------T~E~I~~~V~~~i~ 131 (164)
T PF04558_consen 104 VAEFEKACGVGVVV---------TPEQIEAAVEKYIE 131 (164)
T ss_dssp HHHHHHTTTTT-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEE---------CHHHHHHHHHHHHH
Confidence 33444445999999 99999999999997
No 337
>PRK09213 pur operon repressor; Provisional
Probab=29.21 E-value=71 Score=28.51 Aligned_cols=36 Identities=19% Similarity=0.056 Sum_probs=26.3
Q ss_pred HHHhhcCCCEEEEc--CCchhHHHHHHHcCCCeEEEec
Q 044441 10 NILETLKPTLVMYD--LFQPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 10 ~~l~~~~pD~vv~D--~~~~~~~~~A~~lgiP~v~~~~ 45 (333)
+.+.+.++|+|+.= .-.+.|..+|..+|+|++..--
T Consensus 124 ~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~vivRK 161 (271)
T PRK09213 124 SAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVIVRR 161 (271)
T ss_pred HHhcccCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 33445578998854 2367888899999999988654
No 338
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=29.14 E-value=2.3e+02 Score=26.19 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=29.9
Q ss_pred hhccccccceeEeecCchhHHHHHH---------hCcceeccccccc
Q 044441 236 KILRHGRIGGFLSHCGWGSAVEGMV---------FGVPIIAMPMVYE 273 (333)
Q Consensus 236 ~ll~~~~~~~~I~hgG~~s~~eal~---------~GvP~i~~P~~~D 273 (333)
+.|..-.++.+|.=||-+|+..|.. .++|+|++|-.-|
T Consensus 86 ~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTID 132 (338)
T cd00363 86 ENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTID 132 (338)
T ss_pred HHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeeccc
Confidence 3566778888999999998877632 2999999997644
No 339
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=29.07 E-value=3.3e+02 Score=22.48 Aligned_cols=25 Identities=12% Similarity=-0.149 Sum_probs=17.7
Q ss_pred CCCEEEEcCCchhHHHHHHHcCCCeEE
Q 044441 16 KPTLVMYDLFQPWAAEAAYQYHIAAVL 42 (333)
Q Consensus 16 ~pD~vv~D~~~~~~~~~A~~lgiP~v~ 42 (333)
+.|+++.|.. ....+++.+|.|...
T Consensus 5 ~ad~v~~DG~--~iv~~~r~~g~~~~~ 29 (177)
T TIGR00696 5 QAELVTPDGI--GVVWGLKLLGYPQQS 29 (177)
T ss_pred hCCEEecCcH--HHHHHHHHcCCCCCC
Confidence 5789999954 345677888877543
No 340
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=29.01 E-value=78 Score=25.96 Aligned_cols=34 Identities=15% Similarity=-0.021 Sum_probs=23.3
Q ss_pred HHHhhcCCCEEEEc--CCchhHHHHHHHcCCCeEEE
Q 044441 10 NILETLKPTLVMYD--LFQPWAAEAAYQYHIAAVLF 43 (333)
Q Consensus 10 ~~l~~~~pD~vv~D--~~~~~~~~~A~~lgiP~v~~ 43 (333)
+.+++..+|+||+= .-...+..+|+.+|+|++..
T Consensus 45 ~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~ 80 (175)
T PRK02304 45 ERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPV 80 (175)
T ss_pred HHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEE
Confidence 33444568888843 23467888889999998754
No 341
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=28.91 E-value=90 Score=27.78 Aligned_cols=32 Identities=28% Similarity=0.147 Sum_probs=21.6
Q ss_pred hcCCCEEEEc----------CCchh----HHHHHHHcCCCeEEEec
Q 044441 14 TLKPTLVMYD----------LFQPW----AAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 14 ~~~pD~vv~D----------~~~~~----~~~~A~~lgiP~v~~~~ 45 (333)
..+||+||+- ...++ |+.-|..+|||.|.++.
T Consensus 82 ~~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 82 GRKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred cCCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 4589999973 12223 33445668999999985
No 342
>PRK13059 putative lipid kinase; Reviewed
Probab=28.84 E-value=2.2e+02 Score=25.58 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=22.0
Q ss_pred ceeEeecCchhHHHHH---H---hCcceeccccc
Q 044441 244 GGFLSHCGWGSAVEGM---V---FGVPIIAMPMV 271 (333)
Q Consensus 244 ~~~I~hgG~~s~~eal---~---~GvP~i~~P~~ 271 (333)
+.+|.-||=||+.|++ . .++|+-++|..
T Consensus 58 d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 58 KYILIAGGDGTVDNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred CEEEEECCccHHHHHHHHHHhcCCCCcEEEECCC
Confidence 4499999999988875 2 35888999963
No 343
>PRK07077 hypothetical protein; Provisional
Probab=28.68 E-value=91 Score=27.25 Aligned_cols=32 Identities=16% Similarity=-0.026 Sum_probs=27.4
Q ss_pred CCCEEEEcCCchhHHHHHHHcCCCeEEEechh
Q 044441 16 KPTLVMYDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 16 ~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
+++++.+|+=+.....+|+..|||++.+-..+
T Consensus 135 ~~gA~aVDMEsaAvA~va~~~giPf~viR~IS 166 (238)
T PRK07077 135 ATGALAVDMESHIAAAFAAARGLPFAACRVIV 166 (238)
T ss_pred hCCCEEEehhHHHHHHHHHHcCCCEEEEEEEE
Confidence 47999999888888899999999999976554
No 344
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=28.67 E-value=1.3e+02 Score=23.08 Aligned_cols=35 Identities=9% Similarity=-0.047 Sum_probs=25.3
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEec
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRL 199 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 199 (333)
+++++.||.+. -.-+..+.++|.+.|++|.+.+..
T Consensus 1 Ili~~~Gt~Gh--v~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 1 ILIATGGTRGH--VYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp EEEEEESSHHH--HHHHHHHHHHHHHTT-EEEEEETG
T ss_pred CEEEEcCChhH--HHHHHHHHHHHhccCCeEEEeecc
Confidence 57788888763 334567889999999999877653
No 345
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=28.64 E-value=91 Score=26.33 Aligned_cols=30 Identities=23% Similarity=0.193 Sum_probs=25.2
Q ss_pred CCCEEEEcCCchhHHHHHHHcCCCeEEEec
Q 044441 16 KPTLVMYDLFQPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 16 ~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 45 (333)
+..+||+|.-.-.+..-|++.|||+..+..
T Consensus 29 ~i~~Visd~~~A~~lerA~~~gIpt~~~~~ 58 (200)
T COG0299 29 EIVAVISDKADAYALERAAKAGIPTVVLDR 58 (200)
T ss_pred EEEEEEeCCCCCHHHHHHHHcCCCEEEecc
Confidence 467899997777889999999999987654
No 346
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=28.27 E-value=2.4e+02 Score=25.58 Aligned_cols=60 Identities=12% Similarity=0.052 Sum_probs=35.0
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
+.+..|.+|+++ +++++-++..|.+++..-.... . ....+ .+.+..++|+.
T Consensus 146 ktvGIiG~G~IG-------~~vA~~~~~fgm~V~~~d~~~~-----------~--------~~~~~---~~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIG-------KRVAKIAQAFGAKVVYYSTSGK-----------N--------KNEEY---ERVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHH-------HHHHHHHhhcCCEEEEECCCcc-----------c--------cccCc---eeecHHHHhhc
Confidence 458899999886 3344444456777654422100 0 00111 35567788998
Q ss_pred cccceeEeecC
Q 044441 241 GRIGGFLSHCG 251 (333)
Q Consensus 241 ~~~~~~I~hgG 251 (333)
+++ ++.|+=
T Consensus 197 sDv--v~lh~P 205 (311)
T PRK08410 197 SDI--ISIHAP 205 (311)
T ss_pred CCE--EEEeCC
Confidence 877 888874
No 347
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=28.20 E-value=1.1e+02 Score=26.72 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=22.9
Q ss_pred HHhhcCCCEEEEcCC--chhHHHHHHHcCCCeEEEec
Q 044441 11 ILETLKPTLVMYDLF--QPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 11 ~l~~~~pD~vv~D~~--~~~~~~~A~~lgiP~v~~~~ 45 (333)
.+-..+||+||.... ..-...-.++.|||++.+.+
T Consensus 67 ~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~ 103 (260)
T PRK03379 67 RIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDA 103 (260)
T ss_pred HHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCC
Confidence 344569999998532 12233445678999999854
No 348
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=28.15 E-value=34 Score=27.76 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=21.5
Q ss_pred cchHHHHHHHhhc------CCCEEEEcCC---chhHHHHHHHcCC--CeEEE
Q 044441 3 DAKPAFCNILETL------KPTLVMYDLF---QPWAAEAAYQYHI--AAVLF 43 (333)
Q Consensus 3 ~~~~~l~~~l~~~------~pD~vv~D~~---~~~~~~~A~~lgi--P~v~~ 43 (333)
+|.+-+.+-+++. -||+++.|.- .-.+..+.+.+|+ |.+.+
T Consensus 60 ~M~Evl~RR~~~~~~~~~~lPDLilIDGG~gQl~aa~~~l~~lgl~i~vigl 111 (155)
T PF08459_consen 60 AMREVLTRRFKRLKEEKEPLPDLILIDGGKGQLNAAKEVLKELGLNIPVIGL 111 (155)
T ss_dssp HHHHHHHHHHCCCHHHT----SEEEESSSHHHHHHHHHHHHCTT----EEEE
T ss_pred HHHHHHHHHHhcccccCCCCCCEEEEcCCHHHHHHHHHHHHHcCCCeEEEEE
Confidence 4455555555432 4999999932 3345555566774 55444
No 349
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=28.14 E-value=1.7e+02 Score=27.17 Aligned_cols=10 Identities=40% Similarity=0.952 Sum_probs=8.7
Q ss_pred Ccceeccccc
Q 044441 262 GVPIIAMPMV 271 (333)
Q Consensus 262 GvP~i~~P~~ 271 (333)
++|+|++|..
T Consensus 123 ~~p~i~VPTt 132 (367)
T cd08182 123 ALPLIAIPTT 132 (367)
T ss_pred CCCEEEeCCC
Confidence 6899999985
No 350
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=28.10 E-value=61 Score=24.49 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCEEEEcCC---------chhHHHHHHHcCCCeEE
Q 044441 6 PAFCNILETLKPTLVMYDLF---------QPWAAEAAYQYHIAAVL 42 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~---------~~~~~~~A~~lgiP~v~ 42 (333)
+.+.+++++.++|+||.-+. .+.-...|-.+|||+++
T Consensus 61 ~~i~~~i~~~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 61 PSLRELLAEGKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred hhHHHHHHcCCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 67889999999999998422 34556778889999975
No 351
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=27.69 E-value=94 Score=27.03 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=32.5
Q ss_pred HHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechh
Q 044441 9 CNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 9 ~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
...+++..|+.+-+|+=..+-..+++.++||++.+-..+
T Consensus 161 ~~~~~~~~~~a~aveME~aaia~v~~~~~vP~~~ir~IS 199 (234)
T COG0775 161 VAKLRKAFPDALAVEMEGAAIAQVCYRFGVPFLVLRAIS 199 (234)
T ss_pred HHHHHHHCCCcEEEEecHHHHHHHHHHhCCCEEEEEEec
Confidence 345666689999999888888899999999999987654
No 352
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=27.56 E-value=2.4e+02 Score=22.22 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=20.3
Q ss_pred ceeEeecCc------hhHHHHHHhCcceeccc
Q 044441 244 GGFLSHCGW------GSAVEGMVFGVPIIAMP 269 (333)
Q Consensus 244 ~~~I~hgG~------~s~~eal~~GvP~i~~P 269 (333)
.++++|+|- +.+.+|...++|+|++.
T Consensus 61 ~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~ 92 (155)
T cd07035 61 GVVLVTSGPGLTNAVTGLANAYLDSIPLLVIT 92 (155)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 348888664 46778889999999995
No 353
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=27.43 E-value=1.3e+02 Score=28.12 Aligned_cols=10 Identities=40% Similarity=0.667 Sum_probs=8.3
Q ss_pred Ccceeccccc
Q 044441 262 GVPIIAMPMV 271 (333)
Q Consensus 262 GvP~i~~P~~ 271 (333)
++|+|.+|..
T Consensus 127 ~~p~i~VPTt 136 (370)
T cd08192 127 IPPLIAIPTT 136 (370)
T ss_pred CCCEEEecCC
Confidence 3899999974
No 354
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=27.42 E-value=88 Score=24.52 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=26.7
Q ss_pred hHHHHHHHhhcCCCEEEEc-CCchhHHHHHHHcCCCeEEEechhH
Q 044441 5 KPAFCNILETLKPTLVMYD-LFQPWAAEAAYQYHIAAVLFLTISA 48 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D-~~~~~~~~~A~~lgiP~v~~~~~~~ 48 (333)
...+.+++++.+||+|-+- ....+....+-. ++|.+.+.....
T Consensus 69 ~~~~~~~i~~~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 69 MRRLRRLIKKEKPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp HHHHHHHHHHHT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred HHHHHHHHHHcCCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 3567778888899999444 333333333434 999999876654
No 355
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=27.22 E-value=60 Score=28.55 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=22.4
Q ss_pred cceeEeecCchhHHHHHHh----Ccceecccc
Q 044441 243 IGGFLSHCGWGSAVEGMVF----GVPIIAMPM 270 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~~----GvP~i~~P~ 270 (333)
++++|+-||=||++.++.. ++|++.+-.
T Consensus 26 ~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADVIVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 3559999999999988653 689888753
No 356
>PRK06487 glycerate dehydrogenase; Provisional
Probab=27.16 E-value=2.6e+02 Score=25.52 Aligned_cols=60 Identities=10% Similarity=0.018 Sum_probs=35.9
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
+.+..|.+|.++ +++++.++..|.+++..-... .+.. ..++...++|+.
T Consensus 149 ktvgIiG~G~IG-------~~vA~~l~~fgm~V~~~~~~~---------------------~~~~---~~~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELG-------GAVARLAEAFGMRVLIGQLPG---------------------RPAR---PDRLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHH-------HHHHHHHhhCCCEEEEECCCC---------------------Cccc---ccccCHHHHHHh
Confidence 458889999887 345555556677776432210 0001 124566678887
Q ss_pred cccceeEeecCch
Q 044441 241 GRIGGFLSHCGWG 253 (333)
Q Consensus 241 ~~~~~~I~hgG~~ 253 (333)
+++ ++.|+-.+
T Consensus 198 sDi--v~l~lPlt 208 (317)
T PRK06487 198 VDA--LTLHCPLT 208 (317)
T ss_pred CCE--EEECCCCC
Confidence 777 88887543
No 357
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=26.96 E-value=1.2e+02 Score=23.51 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=26.7
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhc--CCCcEEEEEe
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLL--SEVSFIRVLR 198 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~--~~~~~i~~~~ 198 (333)
.+++++|||......+.+..+.+.+++ .+..+-|...
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 489999999876556778888888854 3456666654
No 358
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=26.94 E-value=1.5e+02 Score=27.70 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=45.7
Q ss_pred cceeEeecCchhHHHHHHh------------C-----cceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHH
Q 044441 243 IGGFLSHCGWGSAVEGMVF------------G-----VPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVA 305 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~~------------G-----vP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~ 305 (333)
.+.++|.||..+.+.|+.+ | .|.|..+-.. ++...+.+.-.|+|++.-+-++....+.+++.
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~ 182 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAARILGLGVRKIPTDEDGRMDIEALE 182 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHHHTTSEEEEE-BBTTSSB-HHHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhcceeeeEEEEecCCcchhhhHHHhh
Confidence 4678999998888777532 2 4555554433 46666667777999766543324568889999
Q ss_pred HHHHHHhc
Q 044441 306 RVIKHVLL 313 (333)
Q Consensus 306 ~ai~~vl~ 313 (333)
++|++..+
T Consensus 183 ~~l~~~~~ 190 (373)
T PF00282_consen 183 KALEKDIA 190 (373)
T ss_dssp HHHHHHHH
T ss_pred hhhccccc
Confidence 99887654
No 359
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=26.76 E-value=1.2e+02 Score=28.35 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=8.4
Q ss_pred Ccceeccccc
Q 044441 262 GVPIIAMPMV 271 (333)
Q Consensus 262 GvP~i~~P~~ 271 (333)
++|+|++|..
T Consensus 127 ~~P~iaIPTT 136 (383)
T cd08186 127 ALPLIAINLT 136 (383)
T ss_pred CCCEEEEeCC
Confidence 5899999974
No 360
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=26.76 E-value=1.7e+02 Score=27.44 Aligned_cols=33 Identities=9% Similarity=0.047 Sum_probs=18.5
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEE
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIR 195 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~ 195 (333)
++++|+-++.. .....+..+.+.|++.+..+.+
T Consensus 27 r~livt~~~~~-~~~g~~~~v~~~L~~~~~~~~~ 59 (380)
T cd08185 27 KALIVTGNGSS-KKTGYLDRVIELLKQAGVEVVV 59 (380)
T ss_pred eEEEEeCCCch-hhccHHHHHHHHHHHcCCeEEE
Confidence 35556544331 1245666777777777766543
No 361
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.64 E-value=1.5e+02 Score=26.19 Aligned_cols=43 Identities=9% Similarity=-0.006 Sum_probs=32.7
Q ss_pred hHHHHHHHhhcCCCEEEEcCC--chhHHHHHHHcCCCeEEEechh
Q 044441 5 KPAFCNILETLKPTLVMYDLF--QPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~--~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
..++.+.+++.+..+|+++.. .-.+-.+|+..|+|.+.+.+..
T Consensus 206 l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 206 LKRLIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 346677788889999999954 3345688999999998876543
No 362
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.51 E-value=1.1e+02 Score=28.04 Aligned_cols=35 Identities=29% Similarity=0.268 Sum_probs=23.0
Q ss_pred HHhhcCCCEEEEcCCch------hHHHHHHHcCCCeEEEec
Q 044441 11 ILETLKPTLVMYDLFQP------WAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 11 ~l~~~~pD~vv~D~~~~------~~~~~A~~lgiP~v~~~~ 45 (333)
.|.+.+||+||...... .....-+++|||++.+..
T Consensus 86 ~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~ 126 (342)
T cd01139 86 KVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDF 126 (342)
T ss_pred HHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeC
Confidence 34457999999863321 233445678999999753
No 363
>KOG4417 consensus Predicted endonuclease [General function prediction only]
Probab=26.37 E-value=71 Score=27.15 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=21.2
Q ss_pred hcCCCEEEEcCC-------chhHHHHHHHcCCCeEEEe
Q 044441 14 TLKPTLVMYDLF-------QPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 14 ~~~pD~vv~D~~-------~~~~~~~A~~lgiP~v~~~ 44 (333)
.++||++++|.+ +-.|+.+....|+|+|.+.
T Consensus 113 ~fr~dvilvDGnG~lHprGfGlACHlGvL~~lp~iGVa 150 (261)
T KOG4417|consen 113 EFRPDVILVDGNGELHPRGFGLACHLGVLSGLPSIGVA 150 (261)
T ss_pred CccccEEEEcCCceEcccccchhhhhhHhcCCCccchh
Confidence 468999999954 2234555566778887754
No 364
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=26.20 E-value=4.8e+02 Score=23.43 Aligned_cols=42 Identities=7% Similarity=-0.107 Sum_probs=28.2
Q ss_pred hHHHHHHHhhcCCCEEEEcC---CchhHHHHHHHcCCCeEEEech
Q 044441 5 KPAFCNILETLKPTLVMYDL---FQPWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~---~~~~~~~~A~~lgiP~v~~~~~ 46 (333)
....++++...++++||... .+.....+++..+||.|...+.
T Consensus 56 ~~~a~~li~~~~v~aiig~~~s~~~~~~~~~~~~~~ip~i~~~s~ 100 (346)
T cd06330 56 IREARELVENEGVDMLIGLISSGVALAVAPVAEELKVFFIATDPG 100 (346)
T ss_pred HHHHHHHHhccCCcEEEcccchHHHHHHHHHHHHcCCeEEEcCCC
Confidence 34567777777888888542 2334556777889998886543
No 365
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=26.17 E-value=4.6e+02 Score=26.20 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=21.6
Q ss_pred cceeEeecCc------hhHHHHHHhCcceeccc
Q 044441 243 IGGFLSHCGW------GSAVEGMVFGVPIIAMP 269 (333)
Q Consensus 243 ~~~~I~hgG~------~s~~eal~~GvP~i~~P 269 (333)
.+++++|.|- +.+.+|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3448888874 46788899999999995
No 366
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=26.13 E-value=1.2e+02 Score=25.85 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=34.6
Q ss_pred HHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEE
Q 044441 152 MDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIR 195 (333)
Q Consensus 152 ~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~ 195 (333)
++|+..+.+...++|+|=|.+....+.-..++++|...|.++|=
T Consensus 7 ~TFa~aK~enknaLvtfiTaG~P~v~~T~kilkglq~gG~dIIE 50 (268)
T KOG4175|consen 7 ETFARAKSENKNALVTFITAGDPDVSTTAKILKGLQSGGSDIIE 50 (268)
T ss_pred HHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhcCCcCeEE
Confidence 34666555666899999888877788888899999998888653
No 367
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=25.98 E-value=1.1e+02 Score=26.15 Aligned_cols=35 Identities=23% Similarity=0.078 Sum_probs=23.0
Q ss_pred HHHhhcCCCEEEEcCCchh--HHHHHHHcCCCeEEEe
Q 044441 10 NILETLKPTLVMYDLFQPW--AAEAAYQYHIAAVLFL 44 (333)
Q Consensus 10 ~~l~~~~pD~vv~D~~~~~--~~~~A~~lgiP~v~~~ 44 (333)
+.|.+.+||+|+....... ....-+++|||++.+.
T Consensus 52 E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~ 88 (235)
T cd01149 52 EGVLSLKPTLVIASDEAGPPEALDQLRAAGVPVVTVP 88 (235)
T ss_pred HHhhccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEec
Confidence 3455579999998643221 2344467899999875
No 368
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=25.74 E-value=1.3e+02 Score=29.80 Aligned_cols=26 Identities=12% Similarity=0.342 Sum_probs=20.9
Q ss_pred ceeEeecCch------hHHHHHHhCcceeccc
Q 044441 244 GGFLSHCGWG------SAVEGMVFGVPIIAMP 269 (333)
Q Consensus 244 ~~~I~hgG~~------s~~eal~~GvP~i~~P 269 (333)
.++++|.|-| .+.+|...++|+|++.
T Consensus 78 gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 78 AVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred eEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 4478887744 7889999999999984
No 369
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=25.59 E-value=52 Score=26.05 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=27.9
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHh-----cCCCcEEEEEecCC
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLL-----LSEVSFIRVLRLHP 201 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~-----~~~~~~i~~~~~~~ 201 (333)
.+|+|+.|+-.+..-..+..++.... .....++|.+....
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~ 47 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDAD 47 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TT
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchh
Confidence 38999999977666667777777665 12357899998643
No 370
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional
Probab=25.58 E-value=1e+02 Score=26.52 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=29.5
Q ss_pred HHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechh
Q 044441 9 CNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 9 ~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
.+.+++ -|++.++|+=..+...+|+++++|++.+-..+
T Consensus 147 ~~~l~~-~~~a~~vDME~aAiaqv~~~~~vpf~~ir~IS 184 (218)
T PRK07164 147 LKIIKD-FIFVSFFDMEAFALAQVCFKNKVKFYCIKYVS 184 (218)
T ss_pred HHHHHh-cCCCcEEEchHHHHHHHHHHcCCCEEEEEEEc
Confidence 344444 37888999877788899999999999977654
No 371
>PRK13054 lipid kinase; Reviewed
Probab=25.58 E-value=3.8e+02 Score=23.97 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=22.0
Q ss_pred ceeEeecCchhHHHHHHh------C--cceeccccc
Q 044441 244 GGFLSHCGWGSAVEGMVF------G--VPIIAMPMV 271 (333)
Q Consensus 244 ~~~I~hgG~~s~~eal~~------G--vP~i~~P~~ 271 (333)
+.+|..||=||+.|++.. + +|+-++|..
T Consensus 58 d~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 58 ATVIAGGGDGTINEVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred CEEEEECCccHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 449999999999998744 3 588888963
No 372
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=25.37 E-value=2.6e+02 Score=22.50 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=19.8
Q ss_pred ceeEeecCc------hhHHHHHHhCcceeccc
Q 044441 244 GGFLSHCGW------GSAVEGMVFGVPIIAMP 269 (333)
Q Consensus 244 ~~~I~hgG~------~s~~eal~~GvP~i~~P 269 (333)
++++++.|- +.+.+|...++|+|++.
T Consensus 61 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 61 GALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred EEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 336776664 46788899999999995
No 373
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=25.27 E-value=59 Score=26.47 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=20.9
Q ss_pred ceeEeecCch------hHHHHHHhCcceeccc
Q 044441 244 GGFLSHCGWG------SAVEGMVFGVPIIAMP 269 (333)
Q Consensus 244 ~~~I~hgG~~------s~~eal~~GvP~i~~P 269 (333)
+++++|+|-| .+.||...++|+|++.
T Consensus 62 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 62 VAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred EEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 3478888744 6779999999999994
No 374
>PF00920 ILVD_EDD: Dehydratase family; InterPro: IPR000581 Two dehydratases, dihydroxy-acid dehydratase (4.2.1.9 from EC) (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (4.2.1.12 from EC) (gene edd) have been shown to be evolutionary related []. Dihydroxy-acid dehydratase catalyses the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyses the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GP4_B.
Probab=25.12 E-value=83 Score=30.86 Aligned_cols=46 Identities=11% Similarity=0.067 Sum_probs=29.4
Q ss_pred chHHHHHHHhhcCCCEEE----EcCCchhHHHHHHHcCCCeEEEechhHH
Q 044441 4 AKPAFCNILETLKPTLVM----YDLFQPWAAEAAYQYHIAAVLFLTISAV 49 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv----~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 49 (333)
+...++..++...+|-+| ||-..+....+|-++++|.|.+...+-.
T Consensus 67 IAd~iE~~~~a~~~Dg~V~l~gCDK~~Pg~lMaaarlniPsi~v~gGpm~ 116 (521)
T PF00920_consen 67 IADSIEEMVRAHPFDGMVLLGGCDKIVPGMLMAAARLNIPSIFVYGGPML 116 (521)
T ss_dssp HHHHHHHHHTT---SEEEEE--STTCCHHHHHHHHTTTS-EEE-------
T ss_pred HHHHHHHHHhCCCcceEEEeccCCCccHHHHHHHHHcCCCEEEEecCCCC
Confidence 445667777888999877 7878899999999999999998766543
No 375
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=25.10 E-value=1.1e+02 Score=23.94 Aligned_cols=31 Identities=23% Similarity=0.700 Sum_probs=23.7
Q ss_pred hhccccccceeEeecC-----chhHHHH---HHhCcceecc
Q 044441 236 KILRHGRIGGFLSHCG-----WGSAVEG---MVFGVPIIAM 268 (333)
Q Consensus 236 ~ll~~~~~~~~I~hgG-----~~s~~ea---l~~GvP~i~~ 268 (333)
-++..+++ +|-.=| ||+.+.| ++.|+|+|++
T Consensus 71 ~li~~aDv--vVvrFGekYKQWNaAfDAg~aaAlgKplI~l 109 (144)
T TIGR03646 71 KLIEKADV--VIALFGEKYKQWNAAFDAGYAAALGKPLIIL 109 (144)
T ss_pred HHHhhCCE--EEEEechHHHHHHHHhhHHHHHHcCCCeEEe
Confidence 45665565 888877 8888776 6789999998
No 376
>PRK13057 putative lipid kinase; Reviewed
Probab=25.01 E-value=1.2e+02 Score=27.09 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=22.2
Q ss_pred ceeEeecCchhHHHHH----HhCcceecccc
Q 044441 244 GGFLSHCGWGSAVEGM----VFGVPIIAMPM 270 (333)
Q Consensus 244 ~~~I~hgG~~s~~eal----~~GvP~i~~P~ 270 (333)
+.+|.-||=||+.|++ ..++|+-++|.
T Consensus 52 d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 52 DLVIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred CEEEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 3499999999998885 35789999996
No 377
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=24.80 E-value=1.1e+02 Score=31.61 Aligned_cols=40 Identities=13% Similarity=0.036 Sum_probs=32.2
Q ss_pred HHHHhhcCCCEEEEcC--CchhHHHHHHHcCCCeEEEechhH
Q 044441 9 CNILETLKPTLVMYDL--FQPWAAEAAYQYHIAAVLFLTISA 48 (333)
Q Consensus 9 ~~~l~~~~pD~vv~D~--~~~~~~~~A~~lgiP~v~~~~~~~ 48 (333)
+..++.--+|++|+|. ..+....+|+++|.++|.++.-..
T Consensus 258 e~~i~tG~~D~~vvD~qCi~~~I~eiA~kyG~g~I~tt~r~~ 299 (731)
T cd01916 258 LKVVRSGIADVVVVDEQCIRADILEEAQKLGIPVIATNDKIM 299 (731)
T ss_pred HHHHHcCCCcEEEEecccCcccHHHHHHHhCCCEEEechhhh
Confidence 4456777899999994 456678899999999999887654
No 378
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=24.69 E-value=6.4e+02 Score=25.42 Aligned_cols=115 Identities=22% Similarity=0.345 Sum_probs=57.5
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
..++++++|++.. ....+.+.|.+.|..+-++ . .. ...+|.+++..++.+....++.. .
T Consensus 502 ~~vail~~G~~~~----~al~vae~L~~~Gi~~TVv-d-~r-----fvkPlD~~ll~~La~~h~~~vtl---------E- 560 (627)
T COG1154 502 EKVAILAFGTMLP----EALKVAEKLNAYGISVTVV-D-PR-----FVKPLDEALLLELAKSHDLVVTL---------E- 560 (627)
T ss_pred CcEEEEecchhhH----HHHHHHHHHHhcCCCcEEE-c-Ce-----ecCCCCHHHHHHHHhhcCeEEEE---------e-
Confidence 3499999999863 4455556666655433211 0 00 01224444444431122222111 0
Q ss_pred cccceeEeecCchh-HHHHH-HhC--cceecc--cc-ccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 241 GRIGGFLSHCGWGS-AVEGM-VFG--VPIIAM--PM-VYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 241 ~~~~~~I~hgG~~s-~~eal-~~G--vP~i~~--P~-~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
+ =+-+||.|| ++|.+ .+| +|++.+ |- +-||..-...+.+.| ++++.|.+.|...+.
T Consensus 561 -e---~~~~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~~g-------------Ld~~~i~~~i~~~l~ 623 (627)
T COG1154 561 -E---NVVDGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAELG-------------LDAEGIARRILEWLK 623 (627)
T ss_pred -c---CcccccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHHHHcC-------------CCHHHHHHHHHHHHh
Confidence 1 133788775 55665 344 555444 42 345555444444443 577778777777664
No 379
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=24.68 E-value=1e+02 Score=29.34 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=24.8
Q ss_pred HHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 7 AFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
++++.++ +||++|.+ ..+..+|+++|+|++.+.
T Consensus 353 ~~e~~~~--~~dllig~---s~~~~~A~~~~ip~~~~g 385 (417)
T cd01966 353 DLEDLAA--EADLLVTN---SHGRQAAERLGIPLLRAG 385 (417)
T ss_pred HHHHhcc--cCCEEEEc---chhHHHHHhcCCCEEEec
Confidence 3444555 39999998 456779999999998753
No 380
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=24.64 E-value=1.1e+02 Score=26.00 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=28.2
Q ss_pred HHHHHHhhcCCCEEEEcCCchh--HHHHHHH----cCCCeEEEechh
Q 044441 7 AFCNILETLKPTLVMYDLFQPW--AAEAAYQ----YHIAAVLFLTIS 47 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~~~~--~~~~A~~----lgiP~v~~~~~~ 47 (333)
...+.+++++||+||+=...++ |...||. -++|+|.++-.+
T Consensus 51 av~~~~e~~~pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaP 97 (277)
T COG1927 51 AVTEMLEEFNPDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAP 97 (277)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCc
Confidence 3556788899999998744333 4445554 489999987654
No 381
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=24.55 E-value=5.7e+02 Score=23.68 Aligned_cols=104 Identities=18% Similarity=0.198 Sum_probs=57.4
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
+.+..+.+|+++ +.+++-|...+ ..|....... .+.+...+. +. .++...+++..
T Consensus 163 K~vgilG~G~IG-------~~ia~rL~~Fg-~~i~y~~r~~---------~~~~~~~~~-----~~---~~~d~~~~~~~ 217 (336)
T KOG0069|consen 163 KTVGILGLGRIG-------KAIAKRLKPFG-CVILYHSRTQ---------LPPEEAYEY-----YA---EFVDIEELLAN 217 (336)
T ss_pred CEEEEecCcHHH-------HHHHHhhhhcc-ceeeeecccC---------CchhhHHHh-----cc---cccCHHHHHhh
Confidence 458899999987 45555565566 3333333211 111111111 11 15566677887
Q ss_pred cccceeEeecCchhHHHHHHhCcceecccccc--chhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHH
Q 044441 241 GRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVY--EQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIK 309 (333)
Q Consensus 241 ~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~--DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~ 309 (333)
+++ +|-|+ |+.. ..-.|...+++.+-|.++---.+..-...+++.+++.
T Consensus 218 sD~--ivv~~------------------pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~ 268 (336)
T KOG0069|consen 218 SDV--IVVNC------------------PLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALK 268 (336)
T ss_pred CCE--EEEec------------------CCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHh
Confidence 777 77776 4433 3455778888876666663222234556666666654
No 382
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=24.54 E-value=1.1e+02 Score=28.69 Aligned_cols=44 Identities=7% Similarity=-0.050 Sum_probs=21.5
Q ss_pred HHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEE
Q 044441 151 IMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRV 196 (333)
Q Consensus 151 l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~ 196 (333)
+.+.+.....+.+++|+.++.. ....+..+.+.|++.+..+.+.
T Consensus 22 l~~~~~~~g~~~~livt~~~~~--~~g~~~~v~~~L~~~~i~~~~f 65 (383)
T PRK09860 22 AMNMMADYGFTRTLIVTDNMLT--KLGMAGDVQKALEERNIFSVIY 65 (383)
T ss_pred HHHHHHhcCCCEEEEEcCcchh--hCccHHHHHHHHHHcCCeEEEe
Confidence 3334443333335555443322 2345566777777666655443
No 383
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=24.41 E-value=3.8e+02 Score=21.65 Aligned_cols=53 Identities=9% Similarity=0.144 Sum_probs=40.1
Q ss_pred hhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Q 044441 274 QSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSER 330 (333)
Q Consensus 274 Q~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~ 330 (333)
+..|..+-++.|.-.++.- ...+.++|.+.+++=|.++...+.+..+.++.+.
T Consensus 97 ~~lN~~Y~~kFGfpFvi~v----~g~~~~~Il~~l~~Rl~n~~~~E~~~a~~Ev~kI 149 (157)
T TIGR03164 97 TRLNNAYRARFGFPFIMAV----KGKTKQSILAAFEARLNNDRETEFARALREIERI 149 (157)
T ss_pred HHHHHHHHHHCCCeeEEee----CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4569999999999888862 4458899999998888865556777777666654
No 384
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=24.30 E-value=1.2e+02 Score=25.48 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=24.9
Q ss_pred cCCCEEEE-cC-CchhHHHHHHHcCCCeEEEechh
Q 044441 15 LKPTLVMY-DL-FQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 15 ~~pD~vv~-D~-~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
..||+||+ |. -...+..=|.++|||.|.+..+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 36998875 43 35567777889999999998665
No 385
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=24.15 E-value=81 Score=27.86 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=22.6
Q ss_pred HHhhcCCCEEEEcCCchh------HHHHHHHcCCCeEEEe
Q 044441 11 ILETLKPTLVMYDLFQPW------AAEAAYQYHIAAVLFL 44 (333)
Q Consensus 11 ~l~~~~pD~vv~D~~~~~------~~~~A~~lgiP~v~~~ 44 (333)
.|.+.+||+||.+..... .....++.|+|++.+.
T Consensus 74 ~I~~l~PDlIi~~~~~~~~~~~~~~~~~L~~~gipv~~~~ 113 (284)
T cd01148 74 TVLAARPDLVFGGWSYGFDKGGLGTPDSLAELGIKTYILP 113 (284)
T ss_pred HHhcCCCCEEEEecccccCCCCCCCHHHHHHCCCeEEECc
Confidence 355579999999732111 1345567899999875
No 386
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=24.04 E-value=1.9e+02 Score=25.41 Aligned_cols=42 Identities=17% Similarity=0.055 Sum_probs=31.1
Q ss_pred chHHHHHHHhhcCCCEEEEcCC------chhHHHHHHHcCCCeEEEec
Q 044441 4 AKPAFCNILETLKPTLVMYDLF------QPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv~D~~------~~~~~~~A~~lgiP~v~~~~ 45 (333)
..+++.+++++.+.++||==.+ +--+..+++.+|||++.+.-
T Consensus 53 ~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 53 GAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred CHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 3578999999999999772222 22255778899999999863
No 387
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=24.02 E-value=1.3e+02 Score=28.01 Aligned_cols=33 Identities=18% Similarity=0.107 Sum_probs=22.3
Q ss_pred HhhcCCCEEEEcCCchh-HHHHHHHcCCCeEEEe
Q 044441 12 LETLKPTLVMYDLFQPW-AAEAAYQYHIAAVLFL 44 (333)
Q Consensus 12 l~~~~pD~vv~D~~~~~-~~~~A~~lgiP~v~~~ 44 (333)
|...+||+||....... .....++.|+|++.+.
T Consensus 115 Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~ 148 (359)
T PRK09534 115 VVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFP 148 (359)
T ss_pred HhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeC
Confidence 44479999998743222 2445577899998864
No 388
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=23.90 E-value=1.3e+02 Score=25.37 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=27.1
Q ss_pred HHHHHHhhc--CCCEEEEc--CCchhHHHHHHHcCCCeEEEe
Q 044441 7 AFCNILETL--KPTLVMYD--LFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 7 ~l~~~l~~~--~pD~vv~D--~~~~~~~~~A~~lgiP~v~~~ 44 (333)
.+.+.+++. .+|+||+= .-.+.+..+|+.+++|++...
T Consensus 53 ~la~~i~~~~~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~r 94 (202)
T PRK00455 53 FLAEAIKDSGIEFDVVAGPATGGIPLAAAVARALDLPAIFVR 94 (202)
T ss_pred HHHHHHHhcCCCCCEEEecccCcHHHHHHHHHHhCCCEEEEe
Confidence 334444444 78988854 346778899999999998764
No 389
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=23.89 E-value=1.7e+02 Score=22.85 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=19.4
Q ss_pred hccccccceeEeecCchhHHHHHH---------h-Ccceeccc
Q 044441 237 ILRHGRIGGFLSHCGWGSAVEGMV---------F-GVPIIAMP 269 (333)
Q Consensus 237 ll~~~~~~~~I~hgG~~s~~eal~---------~-GvP~i~~P 269 (333)
++..++ ..++.-||.||+-|... + .+|++++=
T Consensus 50 m~~~sd-a~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~ 91 (133)
T PF03641_consen 50 MIESSD-AFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLN 91 (133)
T ss_dssp HHHHES-EEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEE
T ss_pred HHHhCC-EEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeC
Confidence 344444 44677788899988742 2 34988874
No 390
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=23.89 E-value=1.1e+02 Score=26.19 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=26.4
Q ss_pred CCCEEEEcCCchhHHHHHHHcCCCeEEEechh
Q 044441 16 KPTLVMYDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 16 ~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
-++++.+|+=+.+...+|+..|+|++.+-..+
T Consensus 164 ~~~~~~vdME~aAva~va~~~~ip~~~iR~IS 195 (228)
T TIGR01704 164 FPQAIAVEMEATAIAHVCHNFNVPFVVVRAIS 195 (228)
T ss_pred CCcccEecccHHHHHHHHHHhCCCEEEEEEec
Confidence 36788899878888899999999999976554
No 391
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=23.89 E-value=2e+02 Score=22.97 Aligned_cols=32 Identities=13% Similarity=0.137 Sum_probs=24.5
Q ss_pred cCCCEEEEcCC---------chhHHHHHHHcCCCeEEEech
Q 044441 15 LKPTLVMYDLF---------QPWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 15 ~~pD~vv~D~~---------~~~~~~~A~~lgiP~v~~~~~ 46 (333)
.++|+||+|.. .....+++..++.|.+.+...
T Consensus 98 ~~~D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~ 138 (166)
T TIGR00347 98 QKYDFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRV 138 (166)
T ss_pred hcCCEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECC
Confidence 46999999952 125667899999999988754
No 392
>PRK14048 ferrichrome/ferrioxamine B periplasmic transporter; Provisional
Probab=23.70 E-value=1.3e+02 Score=27.91 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=21.8
Q ss_pred HhhcCCCEEEEcCCch------hHHHHHHHcCCCeEEEec
Q 044441 12 LETLKPTLVMYDLFQP------WAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 12 l~~~~pD~vv~D~~~~------~~~~~A~~lgiP~v~~~~ 45 (333)
|-..+||+||...... .....-+++|||++.+..
T Consensus 117 Ilal~PDLVi~~~~~~~~~~~~~~~~~L~~~Gipvv~~~~ 156 (374)
T PRK14048 117 ILTLKADLAILANWQADTEAGQRAIEYLESIGVPVIVVDF 156 (374)
T ss_pred HhhcCCCEEEecCcccccccchhHHHHHHHCCCCEEEEeC
Confidence 3346999999753221 123445778999998853
No 393
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=23.64 E-value=1.1e+02 Score=30.39 Aligned_cols=44 Identities=7% Similarity=-0.035 Sum_probs=35.7
Q ss_pred chHHHHHHHhhcCCCEEE----EcCCchhHHHHHHHcCCCeEEEechh
Q 044441 4 AKPAFCNILETLKPTLVM----YDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv----~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
+...++..++...+|-+| ||-..+....+|-++++|.|.+...+
T Consensus 103 IAdsiE~~~~a~~~Dg~V~l~~CDK~~Pg~lMaaarlniPsI~v~GG~ 150 (577)
T PRK13016 103 LAMETEELIRSHPVDGAVLMGGCDKTTPGLVMGAISMGLPMIYLPAGP 150 (577)
T ss_pred HHHHHHHHHhcCCccceEEeccCCCCcHHHHHHHHhcCCCEEEEecCC
Confidence 445666777888899777 78788999999999999999987654
No 394
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=23.31 E-value=1.2e+02 Score=30.30 Aligned_cols=44 Identities=20% Similarity=0.089 Sum_probs=36.3
Q ss_pred chHHHHHHHhhcCCCEEE----EcCCchhHHHHHHHcCCCeEEEechh
Q 044441 4 AKPAFCNILETLKPTLVM----YDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv----~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
+...++..++...+|-+| ||-..+....+|-++++|.|.+...+
T Consensus 108 IAd~iE~~~~a~~~Dg~V~i~gCDK~~PG~lMaaarlniP~i~v~GG~ 155 (596)
T PRK13017 108 AYLGLVEILYGYPLDGVVLTTGCDKTTPACLMAAATVDLPAIVLSGGP 155 (596)
T ss_pred HHHHHHHHHhcCCcceEEEeccCCCccHHHHHHHHhcCCCEEEEeCCC
Confidence 455667778888899777 78788999999999999999987664
No 395
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=23.25 E-value=1.6e+02 Score=26.27 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEEecCCC
Q 044441 175 SKDEMHEIASGLLLSEVSFIRVLRLHPD 202 (333)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~ 202 (333)
..+..+++.+++.....+.||.+.+..+
T Consensus 47 ~~~Ra~dL~~a~~d~~i~aI~~~rGG~g 74 (282)
T cd07025 47 DEERAADLNAAFADPEIKAIWCARGGYG 74 (282)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCcCC
Confidence 4677888999999999999999887643
No 396
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=23.12 E-value=2.2e+02 Score=26.58 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCCCcEEEE
Q 044441 178 EMHEIASGLLLSEVSFIRV 196 (333)
Q Consensus 178 ~~~~~~~~l~~~~~~~i~~ 196 (333)
....+...|+..+..+.+.
T Consensus 35 ~~~~v~~~L~~~g~~~~~~ 53 (374)
T cd08183 35 RAAWLIEALRAAGIEVTHV 53 (374)
T ss_pred HHHHHHHHHHHcCCeEEEe
Confidence 5566777777777665443
No 397
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=23.08 E-value=4.8e+02 Score=25.98 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=21.5
Q ss_pred cceeEeecCch------hHHHHHHhCcceeccc
Q 044441 243 IGGFLSHCGWG------SAVEGMVFGVPIIAMP 269 (333)
Q Consensus 243 ~~~~I~hgG~~------s~~eal~~GvP~i~~P 269 (333)
.+++++|.|-| .+++|...++|+|++.
T Consensus 65 ~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 65 MSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred CEEEEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 34488888854 6779999999999994
No 398
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=23.08 E-value=1.2e+02 Score=29.86 Aligned_cols=44 Identities=11% Similarity=0.084 Sum_probs=35.5
Q ss_pred chHHHHHHHhhcCCCEEE----EcCCchhHHHHHHHcCCCeEEEechh
Q 044441 4 AKPAFCNILETLKPTLVM----YDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv----~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
+...++..++...+|-+| ||-..+....+|-++++|.|.+...+
T Consensus 77 IAdsiE~~~~~~~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGp 124 (535)
T TIGR00110 77 IADSVETMVNAHRFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGP 124 (535)
T ss_pred HHHHHHHHHhcCCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 345566667778899777 78888999999999999999987654
No 399
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=22.92 E-value=1.2e+02 Score=29.92 Aligned_cols=44 Identities=9% Similarity=0.013 Sum_probs=35.6
Q ss_pred chHHHHHHHhhcCCCEEE----EcCCchhHHHHHHHcCCCeEEEechh
Q 044441 4 AKPAFCNILETLKPTLVM----YDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv----~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
+...++..++...+|-+| ||-..+....+|-+++||.|.+...+
T Consensus 97 iA~~iE~~~~a~~~Dg~V~l~~CDK~~Pg~lMaaarlniPsi~v~gGp 144 (552)
T PRK00911 97 IADSIETVVNAHWFDGLVAIPGCDKNMPGMLMAAARLNVPSIFVYGGP 144 (552)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 345566667778899777 78788999999999999999987664
No 400
>PRK04946 hypothetical protein; Provisional
Probab=22.87 E-value=81 Score=26.30 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch-hhccccccceeEeecCchhH
Q 044441 177 DEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA-KILRHGRIGGFLSHCGWGSA 255 (333)
Q Consensus 177 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~-~ll~~~~~~~~I~hgG~~s~ 255 (333)
..+...+..+...+.+.+.++.+.- .+...+. +..|+.|. .+++..+. --.|||.|.+
T Consensus 110 ~~L~~fl~~a~~~g~r~v~IIHGkG-----------~gvLk~~--------V~~wL~q~~~V~af~~A--~~~~GG~GA~ 168 (181)
T PRK04946 110 QELGALIAACRKEHVFCACVMHGHG-----------KHILKQQ--------TPLWLAQHPDVMAFHQA--PKEWGGDAAL 168 (181)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCC-----------HhHHHHH--------HHHHHcCCchhheeecc--CcccCCceEE
Confidence 3344455555556777666655421 1233222 44677764 45554444 5789998854
No 401
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=22.49 E-value=6.8e+02 Score=23.87 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=27.5
Q ss_pred HHHHHhhc-CCCEEEEc--CCchhHHHHHHHcCCCeEEEechhH
Q 044441 8 FCNILETL-KPTLVMYD--LFQPWAAEAAYQYHIAAVLFLTISA 48 (333)
Q Consensus 8 l~~~l~~~-~pD~vv~D--~~~~~~~~~A~~lgiP~v~~~~~~~ 48 (333)
+.++-++. ++-+|=+. ....++...|++||||...+.+...
T Consensus 105 ~~kla~~~~~~gViasSaGNha~a~Ayaa~~LgipaTIVmP~~t 148 (457)
T KOG1250|consen 105 LQKLAKQQKKAGVIASSAGNHAQAAAYAARKLGIPATIVMPVAT 148 (457)
T ss_pred HHHHHHhhhcCceEEecCccHHHHHHHHHHhcCCceEEEecCCC
Confidence 34444444 45555544 4577888899999999988876543
No 402
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=22.42 E-value=1.7e+02 Score=21.97 Aligned_cols=39 Identities=18% Similarity=0.065 Sum_probs=29.5
Q ss_pred hHHHHHHHhh-cCCCEEEE--cCC--------chhHHHHHHHcCCCeEEE
Q 044441 5 KPAFCNILET-LKPTLVMY--DLF--------QPWAAEAAYQYHIAAVLF 43 (333)
Q Consensus 5 ~~~l~~~l~~-~~pD~vv~--D~~--------~~~~~~~A~~lgiP~v~~ 43 (333)
.+.+.+.+++ .+.|+||. |.. .+.-..+|-..+||+++-
T Consensus 56 ~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 56 EPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred CcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 4778999999 89999997 311 333456688899999984
No 403
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=22.33 E-value=1.4e+02 Score=25.48 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=27.8
Q ss_pred HhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechh
Q 044441 12 LETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 12 l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
+++.-+++...|+=+.+...+|+..|+|++.+-..+
T Consensus 161 l~~~~~~~~~veME~aa~a~va~~~~vp~~~ir~vS 196 (230)
T PRK05584 161 IRAEFPDALAVEMEGAAIAQVCHEFGVPFVVVRAIS 196 (230)
T ss_pred HHHhCCCCeEEechHHHHHHHHHHcCCCEEEEEEec
Confidence 443335888889877888899999999999976554
No 404
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=22.28 E-value=1.3e+02 Score=30.21 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=35.6
Q ss_pred chHHHHHHHhhcCCCEEE----EcCCchhHHHHHHHcCCCeEEEechh
Q 044441 4 AKPAFCNILETLKPTLVM----YDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv----~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
+...++..++...+|-+| ||-..+....+|-++++|.|.+...+
T Consensus 99 IAdsiE~~~~a~~~Dg~V~i~~CDK~~PG~lMaaarlniPsi~v~gGp 146 (615)
T PRK12448 99 IADSVEYMVNAHCADAMVCISNCDKITPGMLMAALRLNIPVVFVSGGP 146 (615)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCchHHHHHHHHhcCCCEEEEeCCC
Confidence 345566667778899777 78788999999999999999987654
No 405
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=22.28 E-value=1e+02 Score=25.46 Aligned_cols=34 Identities=21% Similarity=0.118 Sum_probs=27.8
Q ss_pred HhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEech
Q 044441 12 LETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 12 l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~ 46 (333)
++....|+.+.|.+ ..+..+|+.+|+|++.+.+.
T Consensus 130 vrth~idlf~ed~~-~na~~iAk~~~~~vilins~ 163 (194)
T COG5663 130 VRTHNIDLFFEDSH-DNAGQIAKNAGIPVILINSP 163 (194)
T ss_pred hHhhccCccccccC-chHHHHHHhcCCcEEEecCc
Confidence 45567899999966 78888999999999998654
No 406
>PHA02754 hypothetical protein; Provisional
Probab=22.22 E-value=1.5e+02 Score=19.49 Aligned_cols=16 Identities=13% Similarity=0.385 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHhh
Q 044441 317 GKQIRRKAKEMSERMR 332 (333)
Q Consensus 317 ~~~~~~~a~~l~~~~~ 332 (333)
++.+++.++++++.+.
T Consensus 13 eK~Fke~MRelkD~LS 28 (67)
T PHA02754 13 EKDFKEAMRELKDILS 28 (67)
T ss_pred HhHHHHHHHHHHHHHh
Confidence 4789999999888764
No 407
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=22.20 E-value=1.2e+02 Score=26.56 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=29.9
Q ss_pred hHHHHHHHhhcCCCEEEEcCCch--hHHHHHHHcCCCeEEEech
Q 044441 5 KPAFCNILETLKPTLVMYDLFQP--WAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~lgiP~v~~~~~ 46 (333)
...+.+.+++.+..+|+++.... .+..+|+.+|+|.+.+.+.
T Consensus 188 l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 188 LAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 34566778888999999995433 3567899999999887655
No 408
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=22.13 E-value=1.6e+02 Score=26.13 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=22.2
Q ss_pred HHhhcCCCEEEEcCC-chhHHHHHHHcCCCeEEEec
Q 044441 11 ILETLKPTLVMYDLF-QPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 11 ~l~~~~pD~vv~D~~-~~~~~~~A~~lgiP~v~~~~ 45 (333)
.|...+||+||.... ..-....-+.+|+|.+.+..
T Consensus 86 ~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~ 121 (289)
T TIGR03659 86 KIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNL 121 (289)
T ss_pred HHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcC
Confidence 355569999998632 22223344678999887643
No 409
>PRK05634 nucleosidase; Provisional
Probab=22.01 E-value=1.3e+02 Score=25.08 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=25.1
Q ss_pred CEEEEcCCchhHHHHHHHcCCCeEEEechh
Q 044441 18 TLVMYDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 18 D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
+..++|+=+.+...+|+++|+|++.+-..+
T Consensus 126 ~a~~vDME~aAva~va~~~~vPf~~iR~IS 155 (185)
T PRK05634 126 RADLVDMEGYAVAAVAAEFGVPCRLVKHVS 155 (185)
T ss_pred cCeEEecHHHHHHHHHHHhCCCEEEEEEec
Confidence 567889878888899999999999976554
No 410
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=22.00 E-value=86 Score=26.89 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=29.6
Q ss_pred cchHHHHHHHhhcCCCEEEEcCCchhH--HHHHHHc-----CCCeEEEechh
Q 044441 3 DAKPAFCNILETLKPTLVMYDLFQPWA--AEAAYQY-----HIAAVLFLTIS 47 (333)
Q Consensus 3 ~~~~~l~~~l~~~~pD~vv~D~~~~~~--~~~A~~l-----giP~v~~~~~~ 47 (333)
....+.+.+++.++||+|+-|.+++-+ ..+-..+ .+-.|.++.+.
T Consensus 33 ~~~~ea~~~i~~~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~ 84 (224)
T COG4565 33 GTLEEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQHYPVDVIVITAAS 84 (224)
T ss_pred ccHHHHHHHHHhhCCCEEEEeeccCCCccHHHHHHHHhcCCCCCEEEEeccc
Confidence 345677888999999999999776653 3333333 35555555443
No 411
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=21.95 E-value=1.6e+02 Score=25.83 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=24.7
Q ss_pred HHHHHHhhcCCCEEEEcCCchh--------------HHHHHHHcCCCeEEEe
Q 044441 7 AFCNILETLKPTLVMYDLFQPW--------------AAEAAYQYHIAAVLFL 44 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~~~~--------------~~~~A~~lgiP~v~~~ 44 (333)
.+...+++.++|+||.|+++.. -...++++++..+.++
T Consensus 122 ~l~~~i~~~~~~~vVIDSls~l~~~~~~~~r~~~~~L~~~lk~~~~t~ll~~ 173 (259)
T TIGR03878 122 TLAYAIKEYKVKNTVIDSITGLYEAKEMMAREIVRQLFNFMKKWYQTALFVS 173 (259)
T ss_pred HHHHHHHhhCCCEEEEcCchHhcccchHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3455567789999999976421 1133566777777654
No 412
>TIGR01498 folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. This model describes the folate biosynthesis enzyme 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. Alternate names include 6-hydroxymethyl-7,8-dihydropterin diphosphokinase and 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (HPPK). The extreme C-terminal region, of typically eight to thirty residues, is not included in the model. This enzyme may be found as a fusion protein with other enzymes of folate biosynthesis.
Probab=21.94 E-value=1.1e+02 Score=23.82 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=21.2
Q ss_pred EEEEecCcccCCHHHHHHHHHHHhcCCC
Q 044441 164 VFVSFGSEYFLSKDEMHEIASGLLLSEV 191 (333)
Q Consensus 164 v~vs~Gs~~~~~~~~~~~~~~~l~~~~~ 191 (333)
+|+++||......+.+...+..|.+.+.
T Consensus 1 ~~i~lGSN~g~~~~~l~~A~~~L~~~~~ 28 (127)
T TIGR01498 1 AYIALGSNLGDRLKNLRAALAALAALPV 28 (127)
T ss_pred CEEEEeCCcHhHHHHHHHHHHHHhcCCc
Confidence 5899999876566778888888876553
No 413
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=21.94 E-value=1.3e+02 Score=29.82 Aligned_cols=44 Identities=14% Similarity=0.033 Sum_probs=35.8
Q ss_pred chHHHHHHHhhcCCCEEE----EcCCchhHHHHHHHcCCCeEEEechh
Q 044441 4 AKPAFCNILETLKPTLVM----YDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv----~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
+...++..++...+|-+| ||-..+....+|-++++|.|.+...+
T Consensus 99 IAdsiE~~~~a~~~Dg~v~i~~CDK~~PG~lMaa~rlniPsi~v~gGp 146 (571)
T PRK06131 99 AAMDVEEMIRGYPIDGVVLLGGCDKTTPALLMGAASVDLPAIVLSGGP 146 (571)
T ss_pred HHHHHHHHHhcCCcceEEEEeeCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 445666777888899776 78888999999999999999987654
No 414
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=21.82 E-value=1.2e+02 Score=25.26 Aligned_cols=36 Identities=6% Similarity=-0.038 Sum_probs=26.0
Q ss_pred HHHHHhhcCCCEEEEc--CCchhHHHHHHHcCCCeEEEe
Q 044441 8 FCNILETLKPTLVMYD--LFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 8 l~~~l~~~~pD~vv~D--~~~~~~~~~A~~lgiP~v~~~ 44 (333)
+.+.+ +.++|+|+.= .-.++|..+|..+++|++...
T Consensus 44 l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~r 81 (187)
T PRK12560 44 IIKYI-DKDIDKIVTEEDKGAPLATPVSLLSGKPLAMAR 81 (187)
T ss_pred HHHHh-CCCCCEEEEEccccHHHHHHHHHhhCCCEEEec
Confidence 33444 5589999954 336778889999999987754
No 415
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=21.80 E-value=1.3e+02 Score=29.80 Aligned_cols=43 Identities=19% Similarity=0.102 Sum_probs=35.1
Q ss_pred hHHHHHHHhhcCCCEEE----EcCCchhHHHHHHHcCCCeEEEechh
Q 044441 5 KPAFCNILETLKPTLVM----YDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv----~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
...+...++...+|.+| ||-..|....+|..++||.|.++..+
T Consensus 109 Ads~e~~~~~~~~Da~V~i~~CDKi~PG~lmaa~r~niPaIfv~gGp 155 (575)
T COG0129 109 ADSVEEVLSAHPFDGVVLIGGCDKITPGMLMAAARLNIPAIFVSGGP 155 (575)
T ss_pred HHHHHHHHhccCcceEEEecCCCCccHHHHHHHHhcCCCEEEecCCc
Confidence 44566667778899777 78788999999999999999987665
No 416
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=21.75 E-value=1.3e+02 Score=28.75 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=28.3
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchh---HHHHHHHcCCCeEE
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPW---AAEAAYQYHIAAVL 42 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~---~~~~A~~lgiP~v~ 42 (333)
.+.+.+++++.++|+||.+.-.+. ..++++++|+|++.
T Consensus 57 ~~~l~~~a~~~~iD~Vv~g~E~~l~~glad~~~~~Gip~~G 97 (426)
T PRK13789 57 KSSVQSFLKSNPFDLIVVGPEDPLVAGFADWAAELGIPCFG 97 (426)
T ss_pred HHHHHHHHHHcCCCEEEECCchHHHHHHHHHHHHcCCCcCC
Confidence 457778889999999999754333 34667789999764
No 417
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=21.74 E-value=4.5e+02 Score=21.49 Aligned_cols=54 Identities=9% Similarity=0.090 Sum_probs=40.3
Q ss_pred hhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHh
Q 044441 274 QSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSERM 331 (333)
Q Consensus 274 Q~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~ 331 (333)
+..|+.+-++.|.=.++.- ...++++|.+++++=|.++...+++..+.++.+..
T Consensus 102 ~~lN~~Y~~kFGfpFii~v----~g~s~~~IL~~l~~Rl~n~~e~E~~~al~Ev~kIa 155 (166)
T PRK13798 102 AAGNRAYEEKFGFVFLICA----TGRSADEMLAALQQRLHNDPETERKVVREELAKIN 155 (166)
T ss_pred HHHHHHHHHhCCCeEEEee----CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4569999999998888862 34588999888888887655667777777666543
No 418
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.70 E-value=1.6e+02 Score=25.18 Aligned_cols=35 Identities=20% Similarity=0.018 Sum_probs=22.6
Q ss_pred HHHhhcCCCEEEEcCCchh-H-HHHHHHcCCCeEEEe
Q 044441 10 NILETLKPTLVMYDLFQPW-A-AEAAYQYHIAAVLFL 44 (333)
Q Consensus 10 ~~l~~~~pD~vv~D~~~~~-~-~~~A~~lgiP~v~~~ 44 (333)
+.|.+.+||+||....... . ..-.++.|+|++.+.
T Consensus 51 E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~ 87 (245)
T cd01144 51 ERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSE 87 (245)
T ss_pred HHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeC
Confidence 3455579999998743222 2 344567899987764
No 419
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=21.51 E-value=1.3e+02 Score=26.39 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=24.9
Q ss_pred CCCEEE-EcC-CchhHHHHHHHcCCCeEEEechhH
Q 044441 16 KPTLVM-YDL-FQPWAAEAAYQYHIAAVLFLTISA 48 (333)
Q Consensus 16 ~pD~vv-~D~-~~~~~~~~A~~lgiP~v~~~~~~~ 48 (333)
.||+|| .|+ ...-+..=|.++|||.|.++.+..
T Consensus 118 ~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTds 152 (249)
T PTZ00254 118 EPRLLIVTDPRTDHQAIREASYVNIPVIALCDTDS 152 (249)
T ss_pred CCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCCC
Confidence 588766 564 355677788999999999987653
No 420
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=21.42 E-value=2e+02 Score=21.25 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=22.4
Q ss_pred HHHHHHhhc-CCCEEEEcCCch--hHHHHHHHc-----CCCeEE
Q 044441 7 AFCNILETL-KPTLVMYDLFQP--WAAEAAYQY-----HIAAVL 42 (333)
Q Consensus 7 ~l~~~l~~~-~pD~vv~D~~~~--~~~~~A~~l-----giP~v~ 42 (333)
+..+.++.. .||+++.|..++ -|..+++.+ .+|.|.
T Consensus 41 ~al~~~~~~~~~dlii~D~~mp~~~G~~~~~~l~~~~~~~pvv~ 84 (130)
T COG0784 41 EALELLRELPQPDLILLDINMPGMDGIELLRRLRARGPNIPVIL 84 (130)
T ss_pred HHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEE
Confidence 445566666 499999996555 355555443 478433
No 421
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=21.39 E-value=1.8e+02 Score=27.22 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=29.2
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchh---------------------HHHHHHHcCCCeEEEec
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPW---------------------AAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~---------------------~~~~A~~lgiP~v~~~~ 45 (333)
.+.+.+.+++.+||+||.|.+... -..+|+..|++.+.+..
T Consensus 147 le~I~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvgh 208 (372)
T cd01121 147 LEDILASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGH 208 (372)
T ss_pred HHHHHHHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 456777778889999999965221 12457888999888753
No 422
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=21.37 E-value=84 Score=28.86 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=30.1
Q ss_pred hhccccccceeEeecCchhHHHHHH---hCcceeccccccc
Q 044441 236 KILRHGRIGGFLSHCGWGSAVEGMV---FGVPIIAMPMVYE 273 (333)
Q Consensus 236 ~ll~~~~~~~~I~hgG~~s~~eal~---~GvP~i~~P~~~D 273 (333)
+-|..-.++.+|.=||-+|+..|.. .|+|+|++|-.-|
T Consensus 88 ~~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTID 128 (324)
T TIGR02483 88 ANLKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTID 128 (324)
T ss_pred HHHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccC
Confidence 3455667888999999999987754 5999999997543
No 423
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=21.33 E-value=1.4e+02 Score=25.66 Aligned_cols=39 Identities=10% Similarity=0.067 Sum_probs=24.3
Q ss_pred HHHHHHhhcCCCEEEEcCCchh-------------------HHHHHHHcCCCeEEEec
Q 044441 7 AFCNILETLKPTLVMYDLFQPW-------------------AAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~~~~-------------------~~~~A~~lgiP~v~~~~ 45 (333)
.+..+.++.++|+||.|++... -..+|.++|++++.++.
T Consensus 114 ~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~q 171 (242)
T cd00984 114 RARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALSQ 171 (242)
T ss_pred HHHHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEecc
Confidence 3444455568999999965211 12345567888888664
No 424
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=21.32 E-value=1.6e+02 Score=29.02 Aligned_cols=33 Identities=15% Similarity=-0.004 Sum_probs=27.1
Q ss_pred HHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEech
Q 044441 11 ILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 11 ~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~ 46 (333)
-+++...++||.|. .+..+|+++|++.|.+.+.
T Consensus 140 ~l~~~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 140 DLRARGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHCCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 34556899999994 5578999999999998875
No 425
>CHL00067 rps2 ribosomal protein S2
Probab=21.31 E-value=1.4e+02 Score=25.97 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=25.1
Q ss_pred CCCEEEE-cC-CchhHHHHHHHcCCCeEEEechhH
Q 044441 16 KPTLVMY-DL-FQPWAAEAAYQYHIAAVLFLTISA 48 (333)
Q Consensus 16 ~pD~vv~-D~-~~~~~~~~A~~lgiP~v~~~~~~~ 48 (333)
.||+||+ |. -...+..=|.++|||.|.+.-+..
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCC
Confidence 5997775 43 345677888999999999887654
No 426
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=21.27 E-value=1.9e+02 Score=25.39 Aligned_cols=39 Identities=18% Similarity=0.062 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCCCEEEEc-CC---chhHHHHHHHcCCCeEEEe
Q 044441 6 PAFCNILETLKPTLVMYD-LF---QPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D-~~---~~~~~~~A~~lgiP~v~~~ 44 (333)
+.=.+++++++.|++|+= +- ...=..+|+.+|||+|.+.
T Consensus 180 e~n~aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 222 (248)
T PRK08057 180 ELERALLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIA 222 (248)
T ss_pred HHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 344678899999999975 22 2334578999999999986
No 427
>PLN02727 NAD kinase
Probab=21.21 E-value=1.8e+02 Score=30.84 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=37.2
Q ss_pred ccceeEeecCchhHHHHHHh----CcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcC
Q 044441 242 RIGGFLSHCGWGSAVEGMVF----GVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 242 ~~~~~I~hgG~~s~~eal~~----GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
.++++|+=||=||++.+... ++|++.+-+. -+|... .+..+++.++|.+++.+
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlG-------------rLGFLT-------di~~ee~~~~L~~Il~G 799 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFRGAVPPVVSFNLG-------------SLGFLT-------SHYFEDFRQDLRQVIHG 799 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCC-------------Cccccc-------cCCHHHHHHHHHHHHcC
Confidence 35669999999999999754 6788777432 123332 35678888888888863
No 428
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=21.14 E-value=50 Score=28.48 Aligned_cols=22 Identities=9% Similarity=-0.123 Sum_probs=18.5
Q ss_pred ceeEeecCchhHHHHHHhCcce
Q 044441 244 GGFLSHCGWGSAVEGMVFGVPI 265 (333)
Q Consensus 244 ~~~I~hgG~~s~~eal~~GvP~ 265 (333)
-++|||||...++-+...|+|.
T Consensus 177 vlvVsHg~vir~ll~~~~~~~~ 198 (228)
T PRK14116 177 VIIAAHGNSLRALTKYIENISD 198 (228)
T ss_pred EEEEcChHHHHHHHHHHhCCCH
Confidence 4599999999888888888774
No 429
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=20.97 E-value=2.2e+02 Score=25.06 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=31.1
Q ss_pred chHHHHHHHhhcCCCEEEEcCC------chhHHHHHHHcCCCeEEEec
Q 044441 4 AKPAFCNILETLKPTLVMYDLF------QPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv~D~~------~~~~~~~A~~lgiP~v~~~~ 45 (333)
..+++.+++++.+.|+||==.+ +--+..+++.+|||++.+--
T Consensus 54 ~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 54 DEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred CHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEc
Confidence 4678899999999999873322 22255678889999999763
No 430
>COG3150 Predicted esterase [General function prediction only]
Probab=20.88 E-value=1.1e+02 Score=25.39 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=32.5
Q ss_pred chHHHHHHHhhcC-CCEEEEc--CCchhHHHHHHHcCCCeEEEechh
Q 044441 4 AKPAFCNILETLK-PTLVMYD--LFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 4 ~~~~l~~~l~~~~-pD~vv~D--~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
...++.+++.+.. .+.+|+- .-.+|+..++...||+.|.+.+..
T Consensus 45 a~~ele~~i~~~~~~~p~ivGssLGGY~At~l~~~~Girav~~NPav 91 (191)
T COG3150 45 ALKELEKAVQELGDESPLIVGSSLGGYYATWLGFLCGIRAVVFNPAV 91 (191)
T ss_pred HHHHHHHHHHHcCCCCceEEeecchHHHHHHHHHHhCChhhhcCCCc
Confidence 3456777776654 5566655 347889999999999999987764
No 431
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=20.80 E-value=1.4e+02 Score=23.13 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=27.1
Q ss_pred HHHHHHHhhcCCCEEEEcCC--chhHHHHHHHcCCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLF--QPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~--~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
..+.+++...-|-+||++.. ...-..+|++.++|.....-..
T Consensus 72 ~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~~t 115 (127)
T PF02603_consen 72 ERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRTPLST 115 (127)
T ss_dssp CHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEESS-H
T ss_pred HHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCCcH
Confidence 45666777667888889854 4557789999999999876543
No 432
>PRK10239 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional
Probab=20.66 E-value=1.8e+02 Score=23.61 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=21.5
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcC
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLS 189 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~ 189 (333)
.||+++||........+...+..|.+.
T Consensus 3 ~v~i~lGSN~g~~~~~l~~A~~~L~~~ 29 (159)
T PRK10239 3 VAYIAIGSNLASPLEQVNAALKALGDI 29 (159)
T ss_pred EEEEEEeCchhhHHHHHHHHHHHHhcC
Confidence 689999998765677788888888665
No 433
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=20.58 E-value=2.4e+02 Score=21.25 Aligned_cols=82 Identities=13% Similarity=0.242 Sum_probs=43.0
Q ss_pred hhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCC--CcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCC
Q 044441 148 DTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSE--VSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKG 225 (333)
Q Consensus 148 ~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~--~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 225 (333)
.+++.+++.....+|++.+--+|.+..+...+..+-..+...+ .++.+..-- ..+.+.....+++ +
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~-------~~R~vSn~IAe~~-----~ 74 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVI-------EYRPVSNAIAEDF-----G 74 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGG-------GGHHHHHHHHHHH-----T
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEE-------eCchhHHHHHHHh-----C
Confidence 5678888888777889999999876544444444444443322 444333221 1234556666666 6
Q ss_pred eEEeccccchhhcccccc
Q 044441 226 MLVQGWVPQAKILRHGRI 243 (333)
Q Consensus 226 ~~~~~~~p~~~ll~~~~~ 243 (333)
|...+ ||.-++....+
T Consensus 75 V~HeS--PQ~ili~~g~~ 90 (105)
T PF11009_consen 75 VKHES--PQVILIKNGKV 90 (105)
T ss_dssp ----S--SEEEEEETTEE
T ss_pred CCcCC--CcEEEEECCEE
Confidence 66654 89888886665
No 434
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=20.53 E-value=19 Score=19.12 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=12.8
Q ss_pred CchhHHHHHHhCcceec
Q 044441 251 GWGSAVEGMVFGVPIIA 267 (333)
Q Consensus 251 G~~s~~eal~~GvP~i~ 267 (333)
|.|+++-.++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 56788888888888664
No 435
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=20.50 E-value=2.8e+02 Score=24.68 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=49.6
Q ss_pred HhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccc
Q 044441 153 DWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWV 232 (333)
Q Consensus 153 ~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 232 (333)
++|... +.++++.+|+.. .....+...|.+.|.++........ .+
T Consensus 125 ~~L~~A--~rI~~~G~g~S~----~vA~~~~~~l~~ig~~~~~~~d~~~----------------------------~~- 169 (281)
T COG1737 125 ELLAKA--RRIYFFGLGSSG----LVASDLAYKLMRIGLNVVALSDTHG----------------------------QL- 169 (281)
T ss_pred HHHHcC--CeEEEEEechhH----HHHHHHHHHHHHcCCceeEecchHH----------------------------HH-
Confidence 444443 337777666654 3455566677777777655533110 11
Q ss_pred cchhhccccccceeEeecCch-----hHHHHHHhCcceeccc
Q 044441 233 PQAKILRHGRIGGFLSHCGWG-----SAVEGMVFGVPIIAMP 269 (333)
Q Consensus 233 p~~~ll~~~~~~~~I~hgG~~-----s~~eal~~GvP~i~~P 269 (333)
.+...+...++-++|+|.|.. .+..|-..|+|+|.+=
T Consensus 170 ~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT 211 (281)
T COG1737 170 MQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAIT 211 (281)
T ss_pred HHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEc
Confidence 234456666777789999964 3444558899999984
No 436
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=20.46 E-value=6.1e+02 Score=24.15 Aligned_cols=96 Identities=11% Similarity=0.052 Sum_probs=53.1
Q ss_pred CCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhc
Q 044441 159 EPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKIL 238 (333)
Q Consensus 159 ~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll 238 (333)
.+||.|-+|+ ......-...+.+.|++.|+.++.......+. .-.|++.+...---+.+.-... +-
T Consensus 183 ~~kp~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~GG----------~aME~Li~~G~~~~VlDlTttE-l~ 248 (403)
T PF06792_consen 183 EDKPLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATGTGG----------RAMERLIREGQFDGVLDLTTTE-LA 248 (403)
T ss_pred CCCcEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCCCch----------HHHHHHHHcCCcEEEEECcHHH-HH
Confidence 4466777754 33345677888888888898876553332221 1222221111011122333332 11
Q ss_pred cccccceeEeecCchhHHHHHHhCcceecccc
Q 044441 239 RHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPM 270 (333)
Q Consensus 239 ~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~ 270 (333)
. .+-.-|..+|-.=+-.|...|+|+|+.|-
T Consensus 249 d--~l~GGv~sagp~Rl~AA~~~GIP~Vvs~G 278 (403)
T PF06792_consen 249 D--ELFGGVLSAGPDRLEAAARAGIPQVVSPG 278 (403)
T ss_pred H--HHhCCCCCCCchHHHHHHHcCCCEEEecC
Confidence 1 11113677788888889999999999985
No 437
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=20.44 E-value=2.5e+02 Score=24.29 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=25.2
Q ss_pred CCCEEE-EcC-CchhHHHHHHHcCCCeEEEechhH
Q 044441 16 KPTLVM-YDL-FQPWAAEAAYQYHIAAVLFLTISA 48 (333)
Q Consensus 16 ~pD~vv-~D~-~~~~~~~~A~~lgiP~v~~~~~~~ 48 (333)
.||+|| .|. -...+..=|.++|||.|.+.-+..
T Consensus 155 ~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 155 LPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCC
Confidence 599777 453 356677888999999999886653
No 438
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=20.40 E-value=93 Score=23.84 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=21.9
Q ss_pred ceeEeecCchhHHHHHH----hC-----cceecccccc
Q 044441 244 GGFLSHCGWGSAVEGMV----FG-----VPIIAMPMVY 272 (333)
Q Consensus 244 ~~~I~hgG~~s~~eal~----~G-----vP~i~~P~~~ 272 (333)
+.+|.-||-||+.|++. .. +|+.++|...
T Consensus 51 d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 51 DRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred CEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 34999999999999863 23 6788888754
No 439
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=20.21 E-value=4.9e+02 Score=23.80 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=37.7
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHh-cCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhcc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLL-LSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILR 239 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~-~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~ 239 (333)
+.+..|.+|+++ +.+++-+. ..|.+++....... ..... ..++ .+.+..++|+
T Consensus 146 ktvGIiG~G~IG-------~~va~~l~~~fgm~V~~~~~~~~-----------~~~~~-----~~~~---~~~~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIG-------MALAQRAHFGFNMPILYNARRHH-----------KEAEE-----RFNA---RYCDLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHH-------HHHHHHHHhcCCCEEEEECCCCc-----------hhhHH-----hcCc---EecCHHHHHH
Confidence 447799999987 33444444 56777664322110 10000 1122 3556778899
Q ss_pred ccccceeEeecCchh
Q 044441 240 HGRIGGFLSHCGWGS 254 (333)
Q Consensus 240 ~~~~~~~I~hgG~~s 254 (333)
.+++ ++.|+-.+.
T Consensus 200 ~sDv--v~lh~plt~ 212 (323)
T PRK15409 200 ESDF--VCIILPLTD 212 (323)
T ss_pred hCCE--EEEeCCCCh
Confidence 8877 999987553
No 440
>PRK05973 replicative DNA helicase; Provisional
Probab=20.08 E-value=1.8e+02 Score=25.42 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=25.0
Q ss_pred HHHHHhhcCCCEEEEcCCchh---------------HHHHHHHcCCCeEEEec
Q 044441 8 FCNILETLKPTLVMYDLFQPW---------------AAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 8 l~~~l~~~~pD~vv~D~~~~~---------------~~~~A~~lgiP~v~~~~ 45 (333)
+.+++++.++++||.|++... -..+|+++|||.+.++-
T Consensus 139 i~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQ 191 (237)
T PRK05973 139 IARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQ 191 (237)
T ss_pred HHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEec
Confidence 445555668999999965322 11356778888888753
Done!