Query 044441
Match_columns 333
No_of_seqs 159 out of 1606
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 05:14:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbf_A Flavonoid 3-O-glucosylt 100.0 1.8E-50 6E-55 383.3 25.3 303 15-332 116-432 (454)
2 2vch_A Hydroquinone glucosyltr 100.0 9E-48 3.1E-52 369.2 31.1 326 3-332 92-447 (480)
3 2pq6_A UDP-glucuronosyl/UDP-gl 100.0 1.1E-46 3.8E-51 362.3 27.9 318 3-332 98-457 (482)
4 2c1x_A UDP-glucose flavonoid 3 100.0 7.1E-46 2.4E-50 353.9 27.8 303 15-332 111-430 (456)
5 2acv_A Triterpene UDP-glucosyl 100.0 3.6E-45 1.2E-49 349.8 24.4 317 4-332 99-441 (463)
6 2iya_A OLEI, oleandomycin glyc 100.0 9.4E-36 3.2E-40 281.6 18.9 291 4-332 97-404 (424)
7 1iir_A Glycosyltransferase GTF 100.0 1.8E-33 6.2E-38 265.4 21.4 277 9-332 85-383 (415)
8 4amg_A Snogd; transferase, pol 100.0 3.6E-34 1.2E-38 268.2 14.8 266 5-333 117-384 (400)
9 1rrv_A Glycosyltransferase GTF 100.0 6.7E-33 2.3E-37 261.5 20.7 274 14-332 92-384 (416)
10 3rsc_A CALG2; TDP, enediyne, s 100.0 1.8E-31 6.1E-36 251.3 23.1 287 5-332 107-396 (415)
11 3ia7_A CALG4; glycosysltransfe 100.0 2.2E-30 7.4E-35 242.4 24.5 287 5-332 91-381 (402)
12 3h4t_A Glycosyltransferase GTF 100.0 1.4E-30 4.7E-35 244.9 22.4 266 15-332 91-366 (404)
13 2p6p_A Glycosyl transferase; X 100.0 2E-30 6.9E-35 241.7 22.0 262 5-333 96-363 (384)
14 2iyf_A OLED, oleandomycin glyc 100.0 4.4E-30 1.5E-34 242.9 22.4 286 5-332 93-382 (430)
15 2yjn_A ERYCIII, glycosyltransf 100.0 5.5E-30 1.9E-34 243.4 19.5 282 4-332 132-418 (441)
16 2o6l_A UDP-glucuronosyltransfe 100.0 1.3E-28 4.4E-33 203.8 17.4 164 146-333 6-170 (170)
17 4fzr_A SSFS6; structural genom 100.0 9.7E-29 3.3E-33 231.5 14.2 264 5-332 112-383 (398)
18 3oti_A CALG3; calicheamicin, T 99.9 1.6E-27 5.4E-32 223.3 16.1 259 4-332 118-380 (398)
19 3tsa_A SPNG, NDP-rhamnosyltran 99.9 1.3E-26 4.4E-31 216.4 19.5 263 5-332 103-371 (391)
20 3otg_A CALG1; calicheamicin, T 99.9 3E-24 1E-28 201.5 25.4 269 5-332 119-391 (412)
21 3s2u_A UDP-N-acetylglucosamine 99.9 1.2E-20 4.3E-25 174.7 20.6 244 7-327 83-338 (365)
22 2jzc_A UDP-N-acetylglucosamine 99.7 1.1E-16 3.7E-21 136.8 9.7 144 156-311 23-196 (224)
23 1f0k_A MURG, UDP-N-acetylgluco 99.6 4.5E-14 1.5E-18 129.7 20.6 228 6-311 86-322 (364)
24 3hbm_A UDP-sugar hydrolase; PS 99.5 4.6E-12 1.6E-16 112.3 21.5 116 161-291 157-273 (282)
25 3dzc_A UDP-N-acetylglucosamine 99.2 1.6E-10 5.5E-15 107.8 12.6 252 4-322 99-372 (396)
26 3ot5_A UDP-N-acetylglucosamine 99.1 9E-10 3.1E-14 102.9 14.5 242 4-313 102-360 (403)
27 3okp_A GDP-mannose-dependent a 99.0 3.7E-08 1.3E-12 90.7 21.7 259 5-328 75-359 (394)
28 1v4v_A UDP-N-acetylglucosamine 99.0 5.7E-09 2E-13 96.0 15.4 78 223-314 254-334 (376)
29 1vgv_A UDP-N-acetylglucosamine 99.0 5.7E-09 1.9E-13 96.2 13.6 131 160-314 204-342 (384)
30 4hwg_A UDP-N-acetylglucosamine 99.0 1.8E-08 6.2E-13 93.4 16.8 246 4-314 82-342 (385)
31 2jjm_A Glycosyl transferase, g 98.9 9.2E-07 3.1E-11 81.6 24.1 259 6-328 89-365 (394)
32 2gek_A Phosphatidylinositol ma 98.8 1.1E-06 3.8E-11 81.1 21.7 236 6-314 97-349 (406)
33 3beo_A UDP-N-acetylglucosamine 98.8 1E-06 3.4E-11 80.6 20.4 77 224-314 263-342 (375)
34 3c48_A Predicted glycosyltrans 98.6 3.1E-06 1.1E-10 79.1 20.6 94 223-328 305-406 (438)
35 2xci_A KDO-transferase, 3-deox 98.6 8.2E-06 2.8E-10 75.2 21.5 95 225-329 261-361 (374)
36 2r60_A Glycosyl transferase, g 98.5 1.6E-05 5.4E-10 75.8 21.1 94 223-328 334-439 (499)
37 3fro_A GLGA glycogen synthase; 98.4 8.8E-05 3E-09 68.8 24.0 147 163-329 252-412 (439)
38 2x6q_A Trehalose-synthase TRET 98.4 3.4E-05 1.2E-09 71.5 21.0 91 223-327 292-393 (416)
39 2f9f_A First mannosyl transfer 98.4 3E-06 1E-10 69.3 10.8 140 163-329 24-175 (177)
40 2iuy_A Avigt4, glycosyltransfe 98.2 9E-06 3.1E-10 73.4 11.4 125 164-313 164-307 (342)
41 2iw1_A Lipopolysaccharide core 98.1 3.4E-05 1.2E-09 70.2 13.1 157 150-330 185-354 (374)
42 1rzu_A Glycogen synthase 1; gl 98.0 0.00087 3E-08 63.3 22.2 143 150-312 279-438 (485)
43 3qhp_A Type 1 capsular polysac 98.0 3.4E-05 1.2E-09 61.8 10.7 143 162-330 2-157 (166)
44 3oy2_A Glycosyltransferase B73 98.0 0.00072 2.5E-08 62.3 20.9 89 226-327 256-369 (413)
45 2qzs_A Glycogen synthase; glyc 98.0 0.00094 3.2E-08 63.1 21.7 130 163-312 293-439 (485)
46 2bfw_A GLGA glycogen synthase; 97.9 0.00034 1.2E-08 57.7 14.3 93 225-330 96-198 (200)
47 3s28_A Sucrose synthase 1; gly 97.8 0.00098 3.4E-08 67.2 17.8 94 223-328 639-749 (816)
48 4gyw_A UDP-N-acetylglucosamine 97.6 0.00039 1.3E-08 69.5 12.0 123 161-291 522-652 (723)
49 3q3e_A HMW1C-like glycosyltran 97.6 0.00098 3.4E-08 64.6 14.2 138 162-314 441-588 (631)
50 2vsy_A XCC0866; transferase, g 97.5 0.0019 6.4E-08 62.3 15.5 95 224-327 434-536 (568)
51 2hy7_A Glucuronosyltransferase 97.5 0.0076 2.6E-07 55.7 18.6 74 223-314 264-352 (406)
52 3rhz_A GTF3, nucleotide sugar 97.1 0.00063 2.2E-08 61.6 6.3 95 225-332 215-321 (339)
53 2x0d_A WSAF; GT4 family, trans 95.6 0.028 9.5E-07 52.1 8.0 78 223-313 294-378 (413)
54 3vue_A GBSS-I, granule-bound s 93.5 0.54 1.9E-05 45.0 11.4 137 163-313 328-476 (536)
55 2iz6_A Molybdenum cofactor car 91.0 3.8 0.00013 32.8 11.6 132 149-313 35-173 (176)
56 1psw_A ADP-heptose LPS heptosy 87.9 2.7 9.4E-05 37.1 9.6 95 160-268 179-286 (348)
57 3tov_A Glycosyl transferase fa 87.5 1.2 4E-05 40.0 6.9 141 160-313 184-346 (349)
58 3t5t_A Putative glycosyltransf 86.5 21 0.00073 33.5 21.1 92 225-331 353-454 (496)
59 1uqt_A Alpha, alpha-trehalose- 84.2 22 0.00075 33.2 14.1 72 226-314 333-419 (482)
60 2gt1_A Lipopolysaccharide hept 83.9 2.5 8.6E-05 37.1 7.2 135 160-313 177-321 (326)
61 3nb0_A Glycogen [starch] synth 82.9 1.2 4E-05 43.8 4.8 35 236-272 514-552 (725)
62 3oow_A Phosphoribosylaminoimid 76.2 26 0.0009 27.5 10.4 138 162-332 6-154 (166)
63 3lp6_A Phosphoribosylaminoimid 75.7 15 0.0005 29.2 8.2 138 161-331 7-153 (174)
64 1rcu_A Conserved hypothetical 73.9 26 0.00089 28.4 9.6 97 148-270 47-150 (195)
65 3kuu_A Phosphoribosylaminoimid 73.0 21 0.00071 28.3 8.4 140 162-332 13-161 (174)
66 3trh_A Phosphoribosylaminoimid 72.8 23 0.0008 27.9 8.6 141 162-332 7-155 (169)
67 3rg8_A Phosphoribosylaminoimid 71.9 33 0.0011 26.7 10.2 135 162-331 3-146 (159)
68 1t35_A Hypothetical protein YV 71.3 38 0.0013 27.2 10.1 102 149-270 23-135 (191)
69 3ors_A N5-carboxyaminoimidazol 71.2 20 0.0007 28.1 7.9 138 162-332 4-152 (163)
70 1o4v_A Phosphoribosylaminoimid 69.5 39 0.0013 27.0 9.3 138 161-331 13-159 (183)
71 3pdi_B Nitrogenase MOFE cofact 68.5 4.7 0.00016 37.6 4.5 36 6-44 365-400 (458)
72 1ydh_A AT5G11950; structural g 68.4 25 0.00085 29.0 8.5 135 149-310 31-186 (216)
73 4grd_A N5-CAIR mutase, phospho 68.0 22 0.00074 28.2 7.5 141 161-332 12-161 (173)
74 3gl9_A Response regulator; bet 66.9 11 0.00036 27.2 5.5 42 6-47 36-86 (122)
75 2wqk_A 5'-nucleotidase SURE; S 66.4 4.8 0.00016 34.3 3.8 38 8-45 77-127 (251)
76 4b4k_A N5-carboxyaminoimidazol 65.2 50 0.0017 26.3 11.3 141 161-332 22-171 (181)
77 3to5_A CHEY homolog; alpha(5)b 65.1 9.9 0.00034 28.7 5.0 41 7-47 48-97 (134)
78 1xmp_A PURE, phosphoribosylami 64.2 51 0.0018 26.0 10.3 141 161-332 11-160 (170)
79 2lpm_A Two-component response 64.0 6.7 0.00023 29.2 3.8 40 6-45 43-87 (123)
80 1o97_C Electron transferring f 61.7 11 0.00038 32.2 5.3 41 6-46 102-148 (264)
81 3u7q_A Nitrogenase molybdenum- 60.3 8.4 0.00029 36.2 4.6 36 5-43 406-441 (492)
82 1yt5_A Inorganic polyphosphate 59.2 6.8 0.00023 33.3 3.4 52 243-314 42-96 (258)
83 3f6p_A Transcriptional regulat 58.6 19 0.00064 25.7 5.5 42 6-47 36-83 (120)
84 3sbx_A Putative uncharacterize 58.5 53 0.0018 26.4 8.5 101 149-269 34-145 (189)
85 3t6k_A Response regulator rece 58.1 18 0.0006 26.6 5.4 42 6-47 38-88 (136)
86 1efv_B Electron transfer flavo 57.8 14 0.00049 31.3 5.2 41 6-46 106-152 (255)
87 1eiw_A Hypothetical protein MT 57.7 17 0.00057 26.6 4.9 65 238-313 36-109 (111)
88 2xdq_B Light-independent proto 56.7 10 0.00034 35.9 4.5 36 6-44 362-397 (511)
89 3aek_B Light-independent proto 56.7 10 0.00035 36.0 4.5 36 6-44 339-374 (525)
90 3dfz_A SIRC, precorrin-2 dehyd 56.6 54 0.0019 27.1 8.5 144 161-332 32-184 (223)
91 3qua_A Putative uncharacterize 56.4 30 0.001 28.1 6.7 100 150-269 44-154 (199)
92 3m6m_D Sensory/regulatory prot 56.1 14 0.00049 27.4 4.6 41 6-46 48-99 (143)
93 1u0t_A Inorganic polyphosphate 55.7 17 0.00058 31.7 5.5 28 243-270 76-107 (307)
94 1efp_B ETF, protein (electron 55.6 15 0.00051 31.2 4.9 41 6-46 103-149 (252)
95 3s40_A Diacylglycerol kinase; 55.5 23 0.00079 30.7 6.4 81 163-271 12-98 (304)
96 1mio_B Nitrogenase molybdenum 55.1 11 0.00037 35.0 4.4 37 5-44 374-410 (458)
97 3s2u_A UDP-N-acetylglucosamine 54.8 19 0.00064 32.1 5.8 36 162-199 4-39 (365)
98 3pdi_A Nitrogenase MOFE cofact 54.5 8.1 0.00028 36.3 3.4 36 5-43 390-425 (483)
99 2q5c_A NTRC family transcripti 53.9 16 0.00055 29.6 4.7 37 9-48 135-171 (196)
100 3qjg_A Epidermin biosynthesis 53.3 82 0.0028 24.9 9.2 114 162-288 7-143 (175)
101 3cg0_A Response regulator rece 52.9 21 0.0007 26.0 5.0 42 6-47 44-92 (140)
102 1dbw_A Transcriptional regulat 52.6 23 0.00078 25.3 5.1 42 6-47 37-85 (126)
103 2a33_A Hypothetical protein; s 51.9 81 0.0028 25.8 8.8 101 150-270 36-147 (215)
104 3c3m_A Response regulator rece 51.7 25 0.00084 25.7 5.3 41 6-46 37-86 (138)
105 3ox4_A Alcohol dehydrogenase 2 51.6 14 0.00049 33.3 4.5 45 150-196 21-65 (383)
106 1tmy_A CHEY protein, TMY; chem 51.2 26 0.0009 24.6 5.2 42 6-47 37-85 (120)
107 3a10_A Response regulator; pho 50.6 31 0.0011 24.0 5.5 41 6-46 35-82 (116)
108 3ia7_A CALG4; glycosysltransfe 50.3 33 0.0011 30.3 6.7 35 162-198 6-40 (402)
109 2rjn_A Response regulator rece 50.3 25 0.00085 26.2 5.2 43 6-48 41-90 (154)
110 2phj_A 5'-nucleotidase SURE; S 50.1 11 0.00039 31.9 3.2 38 9-46 78-128 (251)
111 3gt7_A Sensor protein; structu 50.0 26 0.00089 26.2 5.2 41 6-46 41-90 (154)
112 1hjr_A Holliday junction resol 49.6 8.8 0.0003 30.1 2.4 45 3-47 46-105 (158)
113 3u7q_B Nitrogenase molybdenum- 49.5 16 0.00056 34.5 4.7 37 5-44 427-470 (523)
114 1u11_A PURE (N5-carboxyaminoim 49.2 99 0.0034 24.6 9.6 139 162-332 22-170 (182)
115 1mio_A Nitrogenase molybdenum 49.1 15 0.00051 34.9 4.3 35 6-43 446-480 (533)
116 4ep4_A Crossover junction endo 48.3 18 0.00061 28.6 4.0 45 3-47 50-109 (166)
117 2qr3_A Two-component system re 47.8 25 0.00086 25.5 4.7 42 6-47 37-90 (140)
118 2a9o_A Response regulator; ess 47.3 33 0.0011 23.9 5.2 42 6-47 35-82 (120)
119 4hn9_A Iron complex transport 47.3 19 0.00067 31.5 4.6 35 11-45 111-145 (335)
120 3goc_A Endonuclease V; alpha-b 47.1 29 0.00099 29.0 5.2 41 6-46 95-144 (237)
121 3tsa_A SPNG, NDP-rhamnosyltran 47.0 22 0.00075 31.5 5.0 29 240-270 114-143 (391)
122 3nhm_A Response regulator; pro 46.9 37 0.0013 24.3 5.5 41 6-46 37-86 (133)
123 3b2n_A Uncharacterized protein 46.5 30 0.001 25.0 4.9 41 6-46 39-86 (133)
124 1zgz_A Torcad operon transcrip 46.3 32 0.0011 24.2 5.1 42 6-47 36-83 (122)
125 2qxy_A Response regulator; reg 46.3 32 0.0011 25.0 5.2 41 6-47 38-85 (142)
126 3grc_A Sensor protein, kinase; 45.9 35 0.0012 24.8 5.3 42 6-47 40-90 (140)
127 2lnd_A De novo designed protei 45.3 48 0.0017 22.4 5.1 49 260-313 49-100 (112)
128 1xhf_A DYE resistance, aerobic 45.3 37 0.0013 23.9 5.2 41 6-46 37-83 (123)
129 4e7p_A Response regulator; DNA 45.0 34 0.0012 25.3 5.2 43 5-47 55-104 (150)
130 3md9_A Hemin-binding periplasm 45.0 25 0.00087 29.2 4.8 35 10-44 53-89 (255)
131 2qzj_A Two-component response 44.9 30 0.001 25.2 4.8 41 6-46 38-84 (136)
132 3crn_A Response regulator rece 44.6 35 0.0012 24.6 5.1 41 6-46 37-84 (132)
133 2rdm_A Response regulator rece 44.3 38 0.0013 24.1 5.3 42 6-47 39-89 (132)
134 3kht_A Response regulator; PSI 44.1 48 0.0016 24.2 5.9 42 5-46 40-90 (144)
135 1srr_A SPO0F, sporulation resp 44.1 32 0.0011 24.3 4.7 41 6-46 37-84 (124)
136 2w36_A Endonuclease V; hypoxan 44.1 34 0.0011 28.4 5.1 41 6-46 91-140 (225)
137 2i2c_A Probable inorganic poly 44.0 12 0.0004 32.1 2.5 52 242-313 35-92 (272)
138 2rjn_A Response regulator rece 43.7 94 0.0032 22.8 10.0 54 261-323 78-132 (154)
139 3cfy_A Putative LUXO repressor 42.9 35 0.0012 24.8 4.9 41 6-46 38-85 (137)
140 1mb3_A Cell division response 42.6 37 0.0013 23.9 4.9 40 7-46 36-84 (124)
141 3h4t_A Glycosyltransferase GTF 42.2 65 0.0022 28.8 7.4 35 163-199 3-37 (404)
142 2pl1_A Transcriptional regulat 41.4 52 0.0018 22.9 5.5 42 6-47 34-82 (121)
143 1p3y_1 MRSD protein; flavoprot 41.4 1.2E+02 0.0039 24.4 8.0 138 162-313 10-185 (194)
144 2pju_A Propionate catabolism o 40.9 31 0.0011 28.6 4.6 32 11-45 149-180 (225)
145 2b4a_A BH3024; flavodoxin-like 40.7 37 0.0013 24.6 4.7 39 6-44 49-95 (138)
146 3cu5_A Two component transcrip 40.6 40 0.0014 24.7 4.9 41 6-46 39-86 (141)
147 3i42_A Response regulator rece 40.5 41 0.0014 23.9 4.8 41 6-46 37-86 (127)
148 3cz5_A Two-component response 40.5 50 0.0017 24.4 5.5 42 6-47 41-89 (153)
149 2h31_A Multifunctional protein 40.4 1.9E+02 0.0067 26.3 10.1 136 161-330 265-408 (425)
150 2q8p_A Iron-regulated surface 40.4 23 0.00079 29.5 3.8 35 11-45 55-90 (260)
151 2r7a_A Bacterial heme binding 40.1 34 0.0011 28.4 4.8 34 11-44 54-89 (256)
152 2etv_A Iron(III) ABC transport 39.8 27 0.00092 30.8 4.3 34 12-45 92-126 (346)
153 3tl4_X Glutaminyl-tRNA synthet 39.6 17 0.00057 29.4 2.6 28 277-313 104-131 (187)
154 1qgu_B Protein (nitrogenase mo 39.3 25 0.00085 33.2 4.2 35 6-43 424-465 (519)
155 2an1_A Putative kinase; struct 39.1 18 0.00061 31.2 2.9 28 243-270 64-95 (292)
156 1qkk_A DCTD, C4-dicarboxylate 39.0 37 0.0013 25.2 4.5 43 6-48 37-86 (155)
157 3c97_A Signal transduction his 38.5 52 0.0018 23.8 5.2 30 6-35 44-75 (140)
158 3psh_A Protein HI_1472; substr 38.4 36 0.0012 29.5 4.9 35 11-45 79-114 (326)
159 1p6q_A CHEY2; chemotaxis, sign 38.4 42 0.0015 23.8 4.6 41 6-46 41-90 (129)
160 3h5i_A Response regulator/sens 38.3 53 0.0018 23.8 5.3 40 7-46 40-87 (140)
161 1qv9_A F420-dependent methylen 38.3 46 0.0016 27.9 4.9 36 12-47 60-101 (283)
162 3eul_A Possible nitrate/nitrit 38.2 42 0.0014 24.8 4.7 43 5-47 50-99 (152)
163 1kgs_A DRRD, DNA binding respo 38.2 46 0.0016 26.6 5.3 42 6-47 36-84 (225)
164 4fzr_A SSFS6; structural genom 38.2 40 0.0014 29.9 5.3 36 162-199 17-52 (398)
165 3rsc_A CALG2; TDP, enediyne, s 38.2 41 0.0014 29.9 5.4 36 162-199 22-57 (415)
166 2jk1_A HUPR, hydrogenase trans 38.2 1.1E+02 0.0037 21.9 7.1 48 261-313 71-118 (139)
167 2j48_A Two-component sensor ki 37.7 50 0.0017 22.6 4.9 41 6-46 35-84 (119)
168 1ys7_A Transcriptional regulat 37.5 48 0.0016 26.7 5.3 41 6-46 41-88 (233)
169 3n0r_A Response regulator; sig 37.2 46 0.0016 28.4 5.3 40 7-46 196-242 (286)
170 3uhj_A Probable glycerol dehyd 37.0 40 0.0014 30.4 5.0 94 149-272 42-140 (387)
171 2qv0_A Protein MRKE; structura 36.9 56 0.0019 23.6 5.2 31 6-36 45-77 (143)
172 1jbe_A Chemotaxis protein CHEY 36.8 60 0.002 22.9 5.3 41 6-46 39-88 (128)
173 1n2z_A Vitamin B12 transport p 36.6 40 0.0014 27.8 4.7 34 11-44 52-87 (245)
174 3n53_A Response regulator rece 36.2 37 0.0013 24.6 4.1 42 6-47 36-86 (140)
175 3kto_A Response regulator rece 36.1 21 0.00071 26.1 2.5 40 8-47 42-90 (136)
176 3ga2_A Endonuclease V; alpha-b 35.8 42 0.0014 28.2 4.5 41 6-46 97-146 (246)
177 3f6c_A Positive transcription 35.3 39 0.0013 24.2 4.0 41 7-47 37-84 (134)
178 2r79_A Periplasmic binding pro 35.2 45 0.0015 28.2 4.9 34 11-44 54-89 (283)
179 2gwr_A DNA-binding response re 35.2 41 0.0014 27.4 4.5 40 7-46 40-85 (238)
180 3lua_A Response regulator rece 35.0 42 0.0014 24.3 4.2 42 6-47 39-91 (140)
181 1zh2_A KDP operon transcriptio 35.0 50 0.0017 22.9 4.5 39 9-47 38-82 (121)
182 1wek_A Hypothetical protein TT 34.8 82 0.0028 25.9 6.2 101 149-270 59-170 (217)
183 3lqk_A Dipicolinate synthase s 34.8 1.8E+02 0.0061 23.4 10.0 149 162-314 9-186 (201)
184 3rqi_A Response regulator prot 34.7 35 0.0012 26.5 3.8 42 6-47 41-89 (184)
185 2zay_A Response regulator rece 34.5 44 0.0015 24.4 4.3 42 6-47 42-92 (147)
186 3fet_A Electron transfer flavo 34.5 61 0.0021 25.3 5.1 39 6-46 61-102 (166)
187 1a04_A Nitrate/nitrite respons 34.4 48 0.0016 26.3 4.7 41 6-46 41-88 (215)
188 1qkk_A DCTD, C4-dicarboxylate 34.3 1.4E+02 0.0046 21.9 13.2 47 261-313 74-120 (155)
189 3ip0_A 2-amino-4-hydroxy-6-hyd 33.9 52 0.0018 25.6 4.6 28 163-190 2-29 (158)
190 1yio_A Response regulatory pro 33.6 43 0.0015 26.4 4.3 40 7-46 39-85 (208)
191 3hzh_A Chemotaxis response reg 33.6 58 0.002 24.3 4.9 41 6-46 71-120 (157)
192 2qx0_A 7,8-dihydro-6-hydroxyme 33.5 72 0.0025 24.8 5.3 28 163-190 3-30 (159)
193 3h1g_A Chemotaxis protein CHEY 33.3 78 0.0027 22.4 5.4 34 14-47 49-91 (129)
194 3bfj_A 1,3-propanediol oxidore 33.1 39 0.0013 30.4 4.3 44 151-194 24-67 (387)
195 1mvo_A PHOP response regulator 33.1 69 0.0024 22.8 5.1 40 7-46 38-84 (136)
196 1f9y_A HPPK, protein (6-hydrox 33.1 55 0.0019 25.5 4.6 28 163-190 2-29 (158)
197 1ta9_A Glycerol dehydrogenase; 32.6 1.3E+02 0.0044 27.7 7.8 93 150-271 81-178 (450)
198 1j9j_A Stationary phase surviV 32.4 29 0.001 29.3 3.0 31 15-45 85-128 (247)
199 1dz3_A Stage 0 sporulation pro 32.1 63 0.0022 22.9 4.7 41 6-46 38-86 (130)
200 2jba_A Phosphate regulon trans 32.0 34 0.0012 24.2 3.1 40 8-47 38-86 (127)
201 2qvg_A Two component response 31.9 76 0.0026 22.8 5.2 42 6-47 43-99 (143)
202 4dad_A Putative pilus assembly 31.8 41 0.0014 24.6 3.7 40 7-46 57-104 (146)
203 1k68_A Phytochrome response re 31.5 84 0.0029 22.3 5.4 42 6-47 38-95 (140)
204 3q9s_A DNA-binding response re 31.5 67 0.0023 26.5 5.3 42 6-47 71-118 (249)
205 2r25_B Osmosensing histidine p 31.2 91 0.0031 22.3 5.5 32 15-46 51-90 (133)
206 3eei_A 5-methylthioadenosine n 31.1 80 0.0027 25.8 5.6 37 11-47 164-200 (233)
207 2oqr_A Sensory transduction pr 31.1 65 0.0022 25.8 5.0 43 6-48 38-86 (230)
208 3grc_A Sensor protein, kinase; 31.0 1.4E+02 0.0049 21.2 10.2 48 261-313 79-126 (140)
209 3r0j_A Possible two component 30.9 64 0.0022 26.4 5.1 42 6-47 57-105 (250)
210 1i3c_A Response regulator RCP1 30.8 87 0.003 22.9 5.5 33 15-47 60-101 (149)
211 3ih5_A Electron transfer flavo 30.7 39 0.0013 27.8 3.5 42 5-46 80-124 (217)
212 2qv7_A Diacylglycerol kinase D 30.6 80 0.0027 27.6 5.8 29 243-271 81-115 (337)
213 2q37_A OHCU decarboxylase; 2-O 30.4 1.2E+02 0.0042 24.0 6.3 53 274-330 117-169 (181)
214 1k66_A Phytochrome response re 30.4 86 0.0029 22.6 5.3 33 15-47 61-102 (149)
215 2qsj_A DNA-binding response re 30.0 45 0.0015 24.7 3.6 41 6-46 39-87 (154)
216 3cg4_A Response regulator rece 29.8 58 0.002 23.5 4.2 41 6-46 41-90 (142)
217 1l5x_A SurviVal protein E; str 29.8 54 0.0018 28.2 4.3 33 14-46 82-128 (280)
218 1cbk_A Protein (7,8-dihydro-6- 29.2 70 0.0024 24.9 4.6 28 163-190 3-30 (160)
219 2l82_A Designed protein OR32; 28.9 1.2E+02 0.0041 21.8 5.3 34 163-200 3-36 (162)
220 2bon_A Lipid kinase; DAG kinas 28.8 1.2E+02 0.004 26.5 6.6 28 244-271 84-119 (332)
221 2o8i_A AGR_C_4230P, hypothetic 28.4 1.5E+02 0.0051 23.1 6.4 53 274-330 101-153 (165)
222 3qbc_A 2-amino-4-hydroxy-6-hyd 28.3 69 0.0024 25.0 4.3 27 163-189 6-32 (161)
223 1vhx_A Putative holliday junct 28.3 71 0.0024 24.5 4.5 41 3-43 42-96 (150)
224 2pln_A HP1043, response regula 28.1 75 0.0026 22.7 4.6 40 6-47 52-96 (137)
225 1efv_A Electron transfer flavo 28.1 66 0.0023 28.1 4.8 42 5-46 75-119 (315)
226 2gkg_A Response regulator homo 27.8 80 0.0027 21.9 4.6 46 261-313 79-124 (127)
227 1rrm_A Lactaldehyde reductase; 27.7 36 0.0012 30.6 3.1 32 161-194 32-63 (386)
228 1kyq_A Met8P, siroheme biosynt 27.5 2.8E+02 0.0097 23.5 8.6 32 161-199 14-45 (274)
229 2oxj_A Hybrid alpha/beta pepti 27.5 84 0.0029 17.4 3.4 29 302-332 4-32 (34)
230 1o97_D Electron transferring f 27.2 67 0.0023 28.1 4.6 43 5-47 76-121 (320)
231 3mm4_A Histidine kinase homolo 27.0 65 0.0022 25.6 4.3 33 15-47 118-161 (206)
232 3ttc_A HYPF, transcriptional r 26.9 51 0.0017 32.1 4.1 39 15-53 355-394 (657)
233 3o7i_A OHCU decarboxylase; lya 26.6 1.5E+02 0.0053 23.7 6.3 53 274-330 126-178 (189)
234 2wm1_A 2-amino-3-carboxymucona 26.6 95 0.0033 26.8 5.6 70 126-199 105-177 (336)
235 3cnb_A DNA-binding response re 26.5 74 0.0025 22.8 4.3 42 6-47 44-94 (143)
236 3dez_A OPRT, oprtase, orotate 26.4 58 0.002 27.3 3.9 36 8-43 90-129 (243)
237 3o4v_A MTA/SAH nucleosidase; m 26.4 82 0.0028 25.7 4.9 40 8-47 159-198 (234)
238 2nrr_A Uvrabc system protein C 26.3 50 0.0017 25.8 3.2 29 16-44 79-112 (159)
239 3c3w_A Two component transcrip 26.3 50 0.0017 26.6 3.5 41 6-46 37-84 (225)
240 3m3h_A OPRT, oprtase, orotate 26.0 58 0.002 27.1 3.8 36 8-43 78-117 (234)
241 1weh_A Conserved hypothetical 25.9 78 0.0027 24.8 4.4 101 149-269 23-134 (171)
242 3t8y_A CHEB, chemotaxis respon 25.8 74 0.0025 23.9 4.3 41 6-46 61-107 (164)
243 2vqe_B 30S ribosomal protein S 25.7 1E+02 0.0035 26.1 5.2 33 16-48 158-192 (256)
244 2q5c_A NTRC family transcripti 25.6 22 0.00075 28.7 1.1 50 241-291 50-102 (196)
245 1s8n_A Putative antiterminator 25.3 1E+02 0.0035 24.0 5.2 42 6-47 48-95 (205)
246 3bl6_A 5'-methylthioadenosine 25.3 1.1E+02 0.0037 24.8 5.5 38 9-47 160-197 (230)
247 3vth_A Hydrogenase maturation 25.2 73 0.0025 31.6 4.9 39 15-53 452-491 (761)
248 1zos_A 5'-methylthioadenosine 25.2 1.2E+02 0.004 24.6 5.6 38 9-47 159-196 (230)
249 1efd_N Ferrichrome-binding per 25.1 51 0.0017 27.5 3.4 32 12-44 62-93 (266)
250 3otg_A CALG1; calicheamicin, T 25.0 1.4E+02 0.0047 26.3 6.5 36 162-199 22-57 (412)
251 2pju_A Propionate catabolism o 24.9 26 0.00087 29.1 1.4 48 242-290 63-113 (225)
252 3bbn_B Ribosomal protein S2; s 24.7 81 0.0028 26.2 4.4 32 16-47 157-190 (231)
253 2ozl_B PDHE1-B, pyruvate dehyd 24.5 3.5E+02 0.012 23.5 9.2 28 162-193 218-245 (341)
254 2e6c_A 5'-nucleotidase SURE; S 24.3 47 0.0016 27.9 2.9 33 14-46 85-130 (244)
255 2o70_A OHCU decarboxylase; URI 23.9 1.5E+02 0.0051 23.3 5.7 53 274-330 105-157 (174)
256 3l7i_A Teichoic acid biosynthe 23.6 45 0.0015 32.8 3.1 92 230-330 605-697 (729)
257 1vi6_A 30S ribosomal protein S 23.6 96 0.0033 25.3 4.6 32 16-47 115-148 (208)
258 3bre_A Probable two-component 23.5 95 0.0032 26.9 5.0 41 7-47 54-103 (358)
259 3r8n_B 30S ribosomal protein S 23.5 78 0.0027 26.1 4.0 32 16-47 149-182 (218)
260 2cob_A LCOR protein; MLR2, KIA 23.5 62 0.0021 21.4 2.7 30 296-327 11-40 (70)
261 2v4n_A Multifunctional protein 23.1 25 0.00087 29.8 1.0 32 14-45 82-126 (254)
262 3dp9_A MTA/SAH nucleosidase; v 22.9 1.1E+02 0.0036 25.0 4.9 37 11-47 161-197 (231)
263 2ayx_A Sensor kinase protein R 22.9 87 0.003 25.9 4.4 41 6-46 163-210 (254)
264 3eq2_A Probable two-component 22.9 78 0.0027 28.1 4.4 42 6-47 39-87 (394)
265 2hy6_A General control protein 22.7 1.1E+02 0.0037 16.9 3.6 29 302-332 4-32 (34)
266 1q57_A DNA primase/helicase; d 22.5 86 0.0029 29.1 4.7 40 7-46 345-403 (503)
267 3c3g_A Alpha/beta peptide with 22.2 1.1E+02 0.0037 16.8 3.2 29 302-332 3-31 (33)
268 3heb_A Response regulator rece 22.1 1.3E+02 0.0044 21.9 5.0 34 14-47 57-99 (152)
269 3qxc_A Dethiobiotin synthetase 21.9 1.3E+02 0.0045 24.9 5.3 43 5-47 118-171 (242)
270 2bni_A General control protein 21.6 1.1E+02 0.0039 16.9 3.1 29 302-332 4-32 (34)
271 3sz8_A 2-dehydro-3-deoxyphosph 21.5 2E+02 0.0067 24.7 6.3 55 258-312 191-270 (285)
272 3bch_A 40S ribosomal protein S 21.3 1.1E+02 0.0038 25.8 4.6 32 16-47 151-184 (253)
273 4a1f_A DNAB helicase, replicat 21.2 88 0.003 27.6 4.2 41 7-47 146-206 (338)
274 3afo_A NADH kinase POS5; alpha 20.9 46 0.0016 30.1 2.3 28 243-270 115-147 (388)
275 3irs_A Uncharacterized protein 20.7 79 0.0027 26.9 3.8 133 175-329 136-279 (291)
276 3c3f_A Alpha/beta peptide with 20.7 1.2E+02 0.0041 16.7 3.2 29 302-332 4-32 (34)
277 3kbq_A Protein TA0487; structu 20.6 3.1E+02 0.01 21.4 6.9 83 163-271 6-98 (172)
278 3j20_B 30S ribosomal protein S 20.6 1.1E+02 0.0038 24.8 4.4 32 16-47 111-144 (202)
279 2q6t_A DNAB replication FORK h 20.5 45 0.0016 30.5 2.3 41 6-46 300-362 (444)
280 1w85_B Pyruvate dehydrogenase 20.4 3.9E+02 0.013 22.9 8.4 28 162-193 203-230 (324)
281 2r6a_A DNAB helicase, replicat 20.3 79 0.0027 29.0 3.9 39 7-45 304-362 (454)
282 3e61_A Putative transcriptiona 20.0 1.1E+02 0.0039 25.0 4.6 37 9-45 57-94 (277)
No 1
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=100.00 E-value=1.8e-50 Score=383.27 Aligned_cols=303 Identities=24% Similarity=0.334 Sum_probs=240.2
Q ss_pred cCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhcccc---CC-----CCCCCC-cccCCCcccccccccccC
Q 044441 15 LKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNII---NP-----SLKYPF-FESDFLDRENKKINRFMH 85 (333)
Q Consensus 15 ~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~---~~-----~~~~p~-~~~~~~~~~~~~~~~~~~ 85 (333)
.++||||+|.+++|+..+|+++|||++.|++++++....+.+... .. ....+. ...+++......++.++.
T Consensus 116 ~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~p~~~~~dlp~~~~ 195 (454)
T 3hbf_A 116 KNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLPGFPELKASDLPEGVI 195 (454)
T ss_dssp CCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTHHHHHHTCCHHHHTTSSCBCCSTTSCCBCGGGSCTTSS
T ss_pred CCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhhHHHHhhcCCCccccccccccCCCCCCcChhhCchhhc
Confidence 378999999999999999999999999999998877654333211 00 001111 122333333333444433
Q ss_pred CCC--CCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCC--CCCChhHHHHhhcCCCCC
Q 044441 86 PTA--NGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESI--FKEDDTKIMDWLSQKEPW 161 (333)
Q Consensus 86 ~~~--~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~--~~~~~~~l~~~l~~~~~~ 161 (333)
... .......+..+.+.. ++.+++||+++||+++++.+++.+ +++++|||++.... ....++++.+||+.++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~-~~~vl~ns~~eLE~~~~~~~~~~~-~~v~~vGPl~~~~~~~~~~~~~~~~~wLd~~~~~ 273 (454)
T 3hbf_A 196 KDIDVPFATMLHKMGLELPR-ANAVAINSFATIHPLIENELNSKF-KLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENS 273 (454)
T ss_dssp SCTTSHHHHHHHHHHHHGGG-SSCEEESSCGGGCHHHHHHHHTTS-SCEEECCCHHHHSCCSCCCCTTCHHHHHHTSCTT
T ss_pred cCCchHHHHHHHHHHHhhcc-CCEEEECChhHhCHHHHHHHHhcC-CCEEEECCcccccccccccchHHHHHHHhcCCCC
Confidence 111 112234455566676 899999999999999999888766 59999999965322 122356799999998888
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhcccc
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHG 241 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~ 241 (333)
++|||||||....+.+++.+++.+|++.+++|||+++... ...+|++|.++. ++|+.+.+|+||.++|+|+
T Consensus 274 ~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~~------~~~lp~~~~~~~---~~~~~vv~w~Pq~~vL~h~ 344 (454)
T 3hbf_A 274 SVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDP------KEKLPKGFLERT---KTKGKIVAWAPQVEILKHS 344 (454)
T ss_dssp CEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSCH------HHHSCTTHHHHT---TTTEEEESSCCHHHHHHST
T ss_pred ceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcc------hhcCCHhHHhhc---CCceEEEeeCCHHHHHhhc
Confidence 9999999999988899999999999999999999998532 235888888776 5688888999999999999
Q ss_pred ccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHh-CeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHH
Q 044441 242 RIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDI-GMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQI 320 (333)
Q Consensus 242 ~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~-G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~ 320 (333)
++++|||||||||++|++++|||+|++|+++||+.||+++++. |+|+.+. .+.+++++|.++|+++|+++++++|
T Consensus 345 ~v~~fvtH~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~----~~~~~~~~l~~av~~ll~~~~~~~~ 420 (454)
T 3hbf_A 345 SVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVD----NGVLTKESIKKALELTMSSEKGGIM 420 (454)
T ss_dssp TEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECG----GGSCCHHHHHHHHHHHHSSHHHHHH
T ss_pred CcCeEEecCCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEec----CCCCCHHHHHHHHHHHHCCChHHHH
Confidence 9999999999999999999999999999999999999999995 9999997 3579999999999999986445699
Q ss_pred HHHHHHHHHHhh
Q 044441 321 RRKAKEMSERMR 332 (333)
Q Consensus 321 ~~~a~~l~~~~~ 332 (333)
|+||++++++++
T Consensus 421 r~~a~~l~~~~~ 432 (454)
T 3hbf_A 421 RQKIVKLKESAF 432 (454)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
No 2
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=100.00 E-value=9e-48 Score=369.24 Aligned_cols=326 Identities=30% Similarity=0.471 Sum_probs=238.6
Q ss_pred cchHHHHHHHhh----cCC-CEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccc------cCCCC--CCCCcc
Q 044441 3 DAKPAFCNILET----LKP-TLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNI------INPSL--KYPFFE 69 (333)
Q Consensus 3 ~~~~~l~~~l~~----~~p-D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~------~~~~~--~~p~~~ 69 (333)
.+.+.+++++++ .++ ||||+|.+++|+..+|+++|||+|.++++++.......+.. ..+.. ..+...
T Consensus 92 ~~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (480)
T 2vch_A 92 RSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLML 171 (480)
T ss_dssp TTHHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHHHHHHHHHCCSCGGGCSSCBCC
T ss_pred hhhHHHHHHHHHhccCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHHHHHHHHhcCCCcccccCCcccC
Confidence 345677888876 378 99999998899999999999999999998866443221100 00000 000000
Q ss_pred cCCCcccccccccccCC-CCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccC--CCCeeecCcCcCCCCC--
Q 044441 70 SDFLDRENKKINRFMHP-TANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLM--ENEIVPVGPLVQESIF-- 144 (333)
Q Consensus 70 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~--~~~~~~vGpl~~~~~~-- 144 (333)
.+++......+...+.. .......+.+..+.+.. .+.+++||+.+||++++..+.+.. .+++++|||++.....
T Consensus 172 Pg~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~nt~~ele~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~ 250 (480)
T 2vch_A 172 PGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKE-AEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEA 250 (480)
T ss_dssp TTCCCBCGGGSCGGGSCTTSHHHHHHHHHHHHGGG-CSEEEESCCTTTSHHHHHHHHSCCTTCCCEEECCCCCCCSCSCC
T ss_pred CCCCCCChHHCchhhhcCCchHHHHHHHHHHhccc-CCEEEEcCHHHHhHHHHHHHHhcccCCCcEEEEecccccccccc
Confidence 11111111111111110 00111122233334555 788999999999998777655311 2589999999764321
Q ss_pred -CCChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCc----------chhhhhcCch
Q 044441 145 -KEDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDE----------KITIEEALPQ 213 (333)
Q Consensus 145 -~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~----------~~~~~~~l~~ 213 (333)
...+.++.+||+.++++++|||||||....+.+++.+++.+|+..+++|||+++..... ..+....+|+
T Consensus 251 ~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~ 330 (480)
T 2vch_A 251 KQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPP 330 (480)
T ss_dssp -----CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCT
T ss_pred CccchhHHHHHhcCCCCCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCccccccccccccccccchhhhcCH
Confidence 23567899999998888999999999988888999999999999999999999864311 0111235899
Q ss_pred hHHHHHHhcCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHH-hHhCeeeEeec
Q 044441 214 GFAEEIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVV-VDIGMGMDVPR 292 (333)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~-~~~G~g~~l~~ 292 (333)
+|.+|. ...++++.+|+||.++|+|+++++|||||||||++||+++|||||++|+++||+.||+++ ++.|+|+.+..
T Consensus 331 ~~~~~~--~~~g~~v~~w~Pq~~vL~h~~v~~fvtHgG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~ 408 (480)
T 2vch_A 331 GFLERT--KKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRA 408 (480)
T ss_dssp THHHHT--TTTEEEEESCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCC
T ss_pred HHHHHh--CCCeEEEeCccCHHHHhCCCCcCeEEecccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeec
Confidence 999888 667787877999999999999999999999999999999999999999999999999997 78899999964
Q ss_pred CccCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 293 DKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 293 ~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
++ .+.+++++|+++|+++|+++++++||+||++++++++
T Consensus 409 ~~-~~~~~~~~l~~av~~vl~~~~~~~~r~~a~~l~~~~~ 447 (480)
T 2vch_A 409 GD-DGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAAC 447 (480)
T ss_dssp CT-TSCCCHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHH
T ss_pred cc-CCccCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 21 1369999999999999987667899999999999875
No 3
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=100.00 E-value=1.1e-46 Score=362.31 Aligned_cols=318 Identities=28% Similarity=0.495 Sum_probs=236.0
Q ss_pred cchHHHHHHHhh-------cCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhc-cccCCCCCCCCccc----
Q 044441 3 DAKPAFCNILET-------LKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLH-NIINPSLKYPFFES---- 70 (333)
Q Consensus 3 ~~~~~l~~~l~~-------~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~---- 70 (333)
.+.+.++++++. .+|||||+|.+++|+..+|+++|||+|.++++++.......+ +......+.|....
T Consensus 98 ~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 177 (482)
T 2pq6_A 98 NFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLT 177 (482)
T ss_dssp SSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHHTTHHHHHHTTCSSCSSGGGGT
T ss_pred HhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHHHHHHHHHHhcCCCCCccccccc
Confidence 455667777763 589999999989999999999999999999988765443221 10000011111100
Q ss_pred ------------CCCcccccccccccCCC---CCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeec
Q 044441 71 ------------DFLDRENKKINRFMHPT---ANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPV 135 (333)
Q Consensus 71 ------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~v 135 (333)
+++......++.++... ......+.+..+.... ++++++||+++||+++++++++.+ +++++|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vl~nt~~~le~~~~~~~~~~~-~~v~~V 255 (482)
T 2pq6_A 178 NGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNK-DTTILLNTFNELESDVINALSSTI-PSIYPI 255 (482)
T ss_dssp SSGGGCBCCSSTTCCSCBGGGSCGGGCCSCTTCHHHHHHHHHHHTCCT-TCCEEESSCGGGGHHHHHHHHTTC-TTEEEC
T ss_pred cccccCccccCCCCCCCchHHCchhhccCCcccHHHHHHHHHHHhhcc-CCEEEEcChHHHhHHHHHHHHHhC-CcEEEE
Confidence 01111111122222110 0011112233444555 889999999999999998888877 689999
Q ss_pred CcCcCC--CC-------C--C---CChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCC
Q 044441 136 GPLVQE--SI-------F--K---EDDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHP 201 (333)
Q Consensus 136 Gpl~~~--~~-------~--~---~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~ 201 (333)
||+... .. . . +.+.++.+||+.++++++|||||||......+++.+++.+|++.+++|||+++...
T Consensus 256 GPl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 335 (482)
T 2pq6_A 256 GPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDL 335 (482)
T ss_dssp CCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred cCCcccccccccccccccccccccccchHHHHHHhcCCCCceEEEecCCcccCCHHHHHHHHHHHHhcCCcEEEEEcCCc
Confidence 999642 11 0 1 12456899999988888999999999887888899999999999999999988532
Q ss_pred CcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHH
Q 044441 202 DEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVV 281 (333)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~ 281 (333)
.. .....+|+++.++. ++|+.+.+|+||.++|+|+++++|||||||||++|++++|||+|++|+++||+.||+++
T Consensus 336 ~~--~~~~~l~~~~~~~~---~~~~~v~~~~pq~~~L~h~~~~~~vth~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~ 410 (482)
T 2pq6_A 336 VI--GGSVIFSSEFTNEI---ADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFI 410 (482)
T ss_dssp ST--TTGGGSCHHHHHHH---TTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH
T ss_pred cc--cccccCcHhHHHhc---CCCEEEEeecCHHHHhcCCCCCEEEecCCcchHHHHHHcCCCEEecCcccchHHHHHHH
Confidence 10 00123778887765 56889999999999999999999999999999999999999999999999999999999
Q ss_pred h-HhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 282 V-DIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 282 ~-~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
+ +.|+|+.+. ..+++++|.++|+++|++++.++||+||+++++.++
T Consensus 411 ~~~~G~g~~l~-----~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~ 457 (482)
T 2pq6_A 411 CNEWEIGMEID-----TNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAE 457 (482)
T ss_dssp HHTSCCEEECC-----SSCCHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCEEEEEC-----CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 7 689999995 458999999999999985334479999999999875
No 4
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=100.00 E-value=7.1e-46 Score=353.92 Aligned_cols=303 Identities=24% Similarity=0.362 Sum_probs=227.3
Q ss_pred cCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhcc------ccCCC--CCCCC---cccCCCcccccccccc
Q 044441 15 LKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHN------IINPS--LKYPF---FESDFLDRENKKINRF 83 (333)
Q Consensus 15 ~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~------~~~~~--~~~p~---~~~~~~~~~~~~~~~~ 83 (333)
.+|||||+|.++.|+..+|+++|||+|.++++++.......+. ...++ ..... ...+++......+...
T Consensus 111 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~lp~~ 190 (456)
T 2c1x_A 111 RPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKVRFRDLQEG 190 (456)
T ss_dssp CCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHHTHHHHHHHHCSSCCTTCTTCBCTTSTTCTTCBGGGSCTT
T ss_pred CCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHhhhHHHHhccCCcccccccccccccCCCCCcccHHhCchh
Confidence 5899999999889999999999999999999876544321110 00000 00000 0111111111112211
Q ss_pred cCCCCC---CchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCC--CCChhHHHHhhcCC
Q 044441 84 MHPTAN---GTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIF--KEDDTKIMDWLSQK 158 (333)
Q Consensus 84 ~~~~~~---~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~--~~~~~~l~~~l~~~ 158 (333)
+..... ......++.+.... ++.+++||+++||+++++.+++.+ +++++|||+...... ...+.++.+||+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vl~ns~~~le~~~~~~~~~~~-~~~~~vGpl~~~~~~~~~~~~~~~~~wl~~~ 268 (456)
T 2c1x_A 191 IVFGNLNSLFSRMLHRMGQVLPK-ATAVFINSFEELDDSLTNDLKSKL-KTYLNIGPFNLITPPPVVPNTTGCLQWLKER 268 (456)
T ss_dssp TSSSCTTSHHHHHHHHHHHHGGG-SSCEEESSCGGGCHHHHHHHHHHS-SCEEECCCHHHHC---------CHHHHHHTS
T ss_pred hcCCCcccHHHHHHHHHHHhhhh-CCEEEECChHHHhHHHHHHHHhcC-CCEEEecCcccCcccccccchhhHHHHHhcC
Confidence 110010 01123334444556 899999999999999888877766 489999999653221 11234689999998
Q ss_pred CCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhc
Q 044441 159 EPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKIL 238 (333)
Q Consensus 159 ~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll 238 (333)
+++++|||||||......+++.+++.+|+..+++|||+++... ...+|++|.++. +.|+.+.+|+||.++|
T Consensus 269 ~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~------~~~l~~~~~~~~---~~~~~v~~w~pq~~vL 339 (456)
T 2c1x_A 269 KPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKA------RVHLPEGFLEKT---RGYGMVVPWAPQAEVL 339 (456)
T ss_dssp CTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGG------GGGSCTTHHHHH---TTTEEEESCCCHHHHH
T ss_pred CCcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCcc------hhhCCHHHHhhc---CCceEEecCCCHHHHh
Confidence 8889999999999988889999999999999999999997532 124777877665 5688888999999999
Q ss_pred cccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHh-CeeeEeecCccCCCcCHHHHHHHHHHHhcCcch
Q 044441 239 RHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDI-GMGMDVPRDKINQRLRREEVARVIKHVLLQEEG 317 (333)
Q Consensus 239 ~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~-G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~ 317 (333)
+|+++++|||||||||++||+++|||+|++|+++||+.||+++++. |+|+.+. ...+++++|.++|+++|++++.
T Consensus 340 ~h~~~~~fvth~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~----~~~~~~~~l~~~i~~ll~~~~~ 415 (456)
T 2c1x_A 340 AHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIE----GGVFTKSGLMSCFDQILSQEKG 415 (456)
T ss_dssp TSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECG----GGSCCHHHHHHHHHHHHHSHHH
T ss_pred cCCcCCEEEecCCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEec----CCCcCHHHHHHHHHHHHCCCcH
Confidence 9999999999999999999999999999999999999999999999 9999996 3568999999999999985334
Q ss_pred HHHHHHHHHHHHHhh
Q 044441 318 KQIRRKAKEMSERMR 332 (333)
Q Consensus 318 ~~~~~~a~~l~~~~~ 332 (333)
++||+||+++++.++
T Consensus 416 ~~~r~~a~~l~~~~~ 430 (456)
T 2c1x_A 416 KKLRENLRALRETAD 430 (456)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 589999999999886
No 5
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=100.00 E-value=3.6e-45 Score=349.82 Aligned_cols=317 Identities=27% Similarity=0.390 Sum_probs=233.0
Q ss_pred chHHHHHHHhh---cCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhcccc-C---C--CCCC---CCcccC
Q 044441 4 AKPAFCNILET---LKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNII-N---P--SLKY---PFFESD 71 (333)
Q Consensus 4 ~~~~l~~~l~~---~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~-~---~--~~~~---p~~~~~ 71 (333)
+.+.+++++++ .+|||||+|.++.|+..+|+++|||++.++++++.......+... . + .... +....+
T Consensus 99 ~~~~~~~ll~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg 178 (463)
T 2acv_A 99 LIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPG 178 (463)
T ss_dssp THHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGGGSCTTCCCCCSSGGGCEECCTT
T ss_pred hhHHHHHHHHhccCCCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHHHHHhhcccCCCCCccccCceeECCC
Confidence 45678888877 689999999988999999999999999999887765443221110 0 0 0000 000111
Q ss_pred C-CcccccccccccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccC--CCCeeecCcCcCCCC-C--C
Q 044441 72 F-LDRENKKINRFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLM--ENEIVPVGPLVQESI-F--K 145 (333)
Q Consensus 72 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~--~~~~~~vGpl~~~~~-~--~ 145 (333)
+ +......+...+.........+.+..+.+.. ++.+++||+++||+++.+.+.+.. ++++++|||+..... . .
T Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~nt~~ele~~~~~~l~~~~~p~~~v~~vGpl~~~~~~~~~~ 257 (463)
T 2acv_A 179 ISNQVPSNVLPDACFNKDGGYIAYYKLAERFRD-TKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPK 257 (463)
T ss_dssp CSSCEEGGGSCHHHHCTTTHHHHHHHHHHHHTT-SSEEEESCCHHHHHHHHHHHHHHCTTSCCEEECCCCCCSSCCCBTT
T ss_pred CCCCCChHHCchhhcCCchHHHHHHHHHHhccc-CCEEEECCHHHHhHHHHHHHHhccccCCcEEEeCCCcccccccccc
Confidence 1 1111111111111000111112222333455 788999999999998877665544 568999999975432 1 1
Q ss_pred ---CChhHHHHhhcCCCCCeEEEEEecCcc-cCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHh
Q 044441 146 ---EDDTKIMDWLSQKEPWSVVFVSFGSEY-FLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIER 221 (333)
Q Consensus 146 ---~~~~~l~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 221 (333)
..+.++.+||+.++++++|||||||.. ..+.+++.+++.+|++.+++|||+++.. ...+|++|.++..
T Consensus 258 ~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~-------~~~l~~~~~~~~~- 329 (463)
T 2acv_A 258 LDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAE-------KKVFPEGFLEWME- 329 (463)
T ss_dssp BCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCC-------GGGSCTTHHHHHH-
T ss_pred cccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCC-------cccCChhHHHhhc-
Confidence 235689999999888899999999999 7788899999999999999999999853 1236777766541
Q ss_pred cCCCeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHH-hHhCeeeEe-ecCccCC--
Q 044441 222 NNKGMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVV-VDIGMGMDV-PRDKINQ-- 297 (333)
Q Consensus 222 ~~~~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~-~~~G~g~~l-~~~~~~~-- 297 (333)
.++++.+.+|+||.++|.|+++++|||||||||++|++++|||+|++|+++||+.||+++ ++.|+|+.+ ..++ .+
T Consensus 330 ~~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~-~~~~ 408 (463)
T 2acv_A 330 LEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYR-KGSD 408 (463)
T ss_dssp HHCSEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCC-TTCC
T ss_pred cCCCEEEEccCCHHHHhCCCccCeEEecCCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccC-CCCc
Confidence 045788889999999999999999999999999999999999999999999999999995 899999999 3211 23
Q ss_pred CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 298 RLRREEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 298 ~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
.+++++|.++|+++|++ +++||+||+++++.++
T Consensus 409 ~~~~~~l~~ai~~ll~~--~~~~r~~a~~l~~~~~ 441 (463)
T 2acv_A 409 VVAAEEIEKGLKDLMDK--DSIVHKKVQEMKEMSR 441 (463)
T ss_dssp CCCHHHHHHHHHHHTCT--TCTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHH
Confidence 68999999999999962 4689999999999875
No 6
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=9.4e-36 Score=281.62 Aligned_cols=291 Identities=18% Similarity=0.274 Sum_probs=206.6
Q ss_pred chHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhcccc-CCCC-------CCCCcccC---C
Q 044441 4 AKPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNII-NPSL-------KYPFFESD---F 72 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~-~~~~-------~~p~~~~~---~ 72 (333)
+.+.+.+++++++||+||+|.+.+|+..+|+++|||+|.+++.+.........+.. .++. ..|..... +
T Consensus 97 ~~~~l~~~l~~~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (424)
T 2iya_A 97 VLPQLEDAYADDRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQDPTADRGEEAAAPAGTGDAEEG 176 (424)
T ss_dssp HHHHHHHHTTTSCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTTHHHHSGGGSCCCC------------------
T ss_pred HHHHHHHHHhccCCCEEEEcCcccHHHHHHHhcCCCEEEEecccccccccccccccccccccccccccccccccccchhh
Confidence 34667778888999999999888899999999999999998765321111100000 0000 00000000 0
Q ss_pred ----Ccccc--cccccccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCC
Q 044441 73 ----LDREN--KKINRFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKE 146 (333)
Q Consensus 73 ----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~ 146 (333)
+.... ..++.++. +.+.. ......... ++.++++++++|+++. ..+++++++|||+....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~--~~g~~--~~~~~~~~~-~~~~l~~~~~~l~~~~-----~~~~~~~~~vGp~~~~~---- 242 (424)
T 2iya_A 177 AEAEDGLVRFFTRLSAFLE--EHGVD--TPATEFLIA-PNRCIVALPRTFQIKG-----DTVGDNYTFVGPTYGDR---- 242 (424)
T ss_dssp ---HHHHHHHHHHHHHHHH--HTTCC--SCHHHHHHC-CSSEEESSCTTTSTTG-----GGCCTTEEECCCCCCCC----
T ss_pred hccchhHHHHHHHHHHHHH--HcCCC--CCHHHhccC-CCcEEEEcchhhCCCc-----cCCCCCEEEeCCCCCCc----
Confidence 00000 00111111 11111 011222224 6789999999888742 44677899999986431
Q ss_pred ChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCe
Q 044441 147 DDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGM 226 (333)
Q Consensus 147 ~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 226 (333)
.+...|++..+++++|||++||......+.+..++++++..+.+++|.++..... + .+.. .++|+
T Consensus 243 --~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~--~---~~~~--------~~~~v 307 (424)
T 2iya_A 243 --SHQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHVVLSVGRFVDP--A---DLGE--------VPPNV 307 (424)
T ss_dssp --GGGCCCCCCCSSCCEEEEECCSSSCCCHHHHHHHHHHHTTCSSEEEEECCTTSCG--G---GGCS--------CCTTE
T ss_pred --ccCCCCCccCCCCCEEEEEcCCCCcchHHHHHHHHHHHhcCCcEEEEEECCcCCh--H---Hhcc--------CCCCe
Confidence 1233577665667899999999986667889999999988888999988753211 0 1111 35689
Q ss_pred EEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHH
Q 044441 227 LVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVAR 306 (333)
Q Consensus 227 ~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ 306 (333)
.+.+|+||.++|+++++ ||||||+||++||+++|+|+|++|...||+.||+++++.|+|+.+. .+.++++++.+
T Consensus 308 ~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~----~~~~~~~~l~~ 381 (424)
T 2iya_A 308 EVHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIP----RDQVTAEKLRE 381 (424)
T ss_dssp EEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECC----GGGCCHHHHHH
T ss_pred EEecCCCHHHHHhhCCE--EEECCchhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcC----cCCCCHHHHHH
Confidence 99999999999998887 9999999999999999999999999999999999999999999996 35689999999
Q ss_pred HHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 307 VIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 307 ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
+|+++|+ +++++++++++++.++
T Consensus 382 ~i~~ll~---~~~~~~~~~~~~~~~~ 404 (424)
T 2iya_A 382 AVLAVAS---DPGVAERLAAVRQEIR 404 (424)
T ss_dssp HHHHHHH---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHc---CHHHHHHHHHHHHHHH
Confidence 9999998 6889999999988875
No 7
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=1.8e-33 Score=265.39 Aligned_cols=277 Identities=14% Similarity=0.118 Sum_probs=194.2
Q ss_pred HHHHh-hcCCCEEEEcC-Cchh--HHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCC--CcccCCCccccc----
Q 044441 9 CNILE-TLKPTLVMYDL-FQPW--AAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYP--FFESDFLDRENK---- 78 (333)
Q Consensus 9 ~~~l~-~~~pD~vv~D~-~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~---- 78 (333)
+++.+ ..+||+||+|. +.+| +..+|+++|||+|.+.+.+....... . |+...+ +... +..+..
T Consensus 85 ~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~-~----p~~~~~~~~~~~--~~~n~~~~~~ 157 (415)
T 1iir_A 85 DEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSPY-Y----PPPPLGEPSTQD--TIDIPAQWER 157 (415)
T ss_dssp HHHHHHTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSS-S----CCCC-----------CHHHHHHHH
T ss_pred HHHHHHhcCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCcCCCcc-c----CCccCCccccch--HHHHHHHHHH
Confidence 34443 57999999996 6788 89999999999999987653321111 0 111111 1000 000000
Q ss_pred -----------ccccccCCCCCCchhhHhHHHhhhccCcEEEecchhhhch-hHHhhhhccCCCCeeecCcCcCCCCCCC
Q 044441 79 -----------KINRFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIES-KYLDYFPSLMENEIVPVGPLVQESIFKE 146 (333)
Q Consensus 79 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~-~~~~~~~~~~~~~~~~vGpl~~~~~~~~ 146 (333)
.++.+.. ..+.+....+.+.... . .+++|++++|++ + +..+ ++++|||+...+. ..
T Consensus 158 ~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~-~-~~l~~~~~~l~~~~-----~~~~--~~~~vG~~~~~~~-~~ 225 (415)
T 1iir_A 158 NNQSAYQRYGGLLNSHRD--AIGLPPVEDIFTFGYT-D-HPWVAADPVLAPLQ-----PTDL--DAVQTGAWILPDE-RP 225 (415)
T ss_dssp HHHHHHHHHHHHHHHHHH--HTTCCCCCCHHHHHHC-S-SCEECSCTTTSCCC-----CCSS--CCEECCCCCCCCC-CC
T ss_pred HHHHHHHHhHHHHHHHHH--HcCCCCCCccccccCC-C-CEEEeeChhhcCCC-----cccC--CeEeeCCCccCcc-cC
Confidence 0000100 1111111122223333 4 789999998886 3 1222 7899999976432 34
Q ss_pred ChhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCe
Q 044441 147 DDTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGM 226 (333)
Q Consensus 147 ~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 226 (333)
.+.++.+|++.. +++|||++||.. ...+.+..+++++++.+.+++|.++..... ... .++|+
T Consensus 226 ~~~~~~~~l~~~--~~~v~v~~Gs~~-~~~~~~~~~~~al~~~~~~~v~~~g~~~~~-------~~~--------~~~~v 287 (415)
T 1iir_A 226 LSPELAAFLDAG--PPPVYLGFGSLG-APADAVRVAIDAIRAHGRRVILSRGWADLV-------LPD--------DGADC 287 (415)
T ss_dssp CCHHHHHHHHTS--SCCEEEECC----CCHHHHHHHHHHHHHTTCCEEECTTCTTCC-------CSS--------CGGGE
T ss_pred CCHHHHHHHhhC--CCeEEEeCCCCC-CcHHHHHHHHHHHHHCCCeEEEEeCCCccc-------ccC--------CCCCE
Confidence 567899999764 359999999987 567888999999999999999988754211 111 34589
Q ss_pred EEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHH
Q 044441 227 LVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVAR 306 (333)
Q Consensus 227 ~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ 306 (333)
.+.+|+||.++|+++++ ||||||+||++||+++|+|+|++|..+||..||+++++.|+|+.+. .+.++.+++.+
T Consensus 288 ~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~----~~~~~~~~l~~ 361 (415)
T 1iir_A 288 FAIGEVNHQVLFGRVAA--VIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHD----GPIPTFDSLSA 361 (415)
T ss_dssp EECSSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECS----SSSCCHHHHHH
T ss_pred EEeCcCChHHHHhhCCE--EEeCCChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCC----cCCCCHHHHHH
Confidence 99999999999965555 9999999999999999999999999999999999999999999996 35689999999
Q ss_pred HHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 307 VIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 307 ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
+|+++ + +++++++++++++.++
T Consensus 362 ~i~~l-~---~~~~~~~~~~~~~~~~ 383 (415)
T 1iir_A 362 ALATA-L---TPETHARATAVAGTIR 383 (415)
T ss_dssp HHHHH-T---SHHHHHHHHHHHHHSC
T ss_pred HHHHH-c---CHHHHHHHHHHHHHHh
Confidence 99999 8 6899999999988764
No 8
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=100.00 E-value=3.6e-34 Score=268.17 Aligned_cols=266 Identities=18% Similarity=0.197 Sum_probs=174.8
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccccccc
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINRFM 84 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 84 (333)
.+.+.+++++++||+||+|.+.+++..+|+.+|||++.+...+........... ...+..
T Consensus 117 ~~~l~~~~~~~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~------------------~~~l~~-- 176 (400)
T 4amg_A 117 VDGALRTARSWRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSEPGLGALI------------------RRAMSK-- 176 (400)
T ss_dssp HHHHHHHHHHHCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCCHHHHHHH------------------HHHTHH--
T ss_pred HHHHHHHHHhcCCCEEEECcchHHHHHHHHHcCCCceeecccccccccchhhHH------------------HHHHHH--
Confidence 456677888999999999999999999999999999987654322111100000 000000
Q ss_pred CCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCCChhHHHHhhcCCCCCeEE
Q 044441 85 HPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKEDDTKIMDWLSQKEPWSVV 164 (333)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~~~v 164 (333)
...+..-.........+....+.+... .......+......+.... ....+..|++..+++++|
T Consensus 177 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~v 240 (400)
T 4amg_A 177 --------DYERHGVTGEPTGSVRLTTTPPSVEAL---LPEDRRSPGAWPMRYVPYN-----GGAVLPDWLPPAAGRRRI 240 (400)
T ss_dssp --------HHHHTTCCCCCSCEEEEECCCHHHHHT---SCGGGCCTTCEECCCCCCC-----CCEECCTTCSCCTTCCEE
T ss_pred --------HHHHhCCCcccccchhhcccCchhhcc---CcccccCCcccCccccccc-----ccccCcccccccCCCcEE
Confidence 000000000000122222221111110 0000011122222222111 122334588888888999
Q ss_pred EEEecCcccCC--HHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccccc
Q 044441 165 FVSFGSEYFLS--KDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHGR 242 (333)
Q Consensus 165 ~vs~Gs~~~~~--~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~~ 242 (333)
||+|||..... .+.+.++++++.+.+..++|..+..... .... .++|+.+.+|+||.++|.|++
T Consensus 241 ~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~------~~~~--------~~~~v~~~~~~p~~~lL~~~~ 306 (400)
T 4amg_A 241 AVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDLA------LLGE--------LPANVRVVEWIPLGALLETCD 306 (400)
T ss_dssp EECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCCC------CCCC--------CCTTEEEECCCCHHHHHTTCS
T ss_pred EEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCcccc------cccc--------CCCCEEEEeecCHHHHhhhhh
Confidence 99999987533 4678889999999999999998754321 1112 466999999999999999887
Q ss_pred cceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHHHH
Q 044441 243 IGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRR 322 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~ 322 (333)
+ ||||||+||++||+++|||+|++|+++||+.||+++++.|+|+.++ ..+.++ ++|+++|+ +++||+
T Consensus 307 ~--~v~h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~----~~~~~~----~al~~lL~---d~~~r~ 373 (400)
T 4amg_A 307 A--IIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAE----AGSLGA----EQCRRLLD---DAGLRE 373 (400)
T ss_dssp E--EEECCCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECC----TTTCSH----HHHHHHHH---CHHHHH
T ss_pred h--eeccCCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcC----CCCchH----HHHHHHHc---CHHHHH
Confidence 7 9999999999999999999999999999999999999999999997 344555 46778888 789999
Q ss_pred HHHHHHHHhhC
Q 044441 323 KAKEMSERMRR 333 (333)
Q Consensus 323 ~a~~l~~~~~~ 333 (333)
||+++++++++
T Consensus 374 ~a~~l~~~~~~ 384 (400)
T 4amg_A 374 AALRVRQEMSE 384 (400)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999998863
No 9
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=6.7e-33 Score=261.53 Aligned_cols=274 Identities=14% Similarity=0.081 Sum_probs=194.4
Q ss_pred hcCCCEEEEcC-Cchh--HHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccc------------
Q 044441 14 TLKPTLVMYDL-FQPW--AAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENK------------ 78 (333)
Q Consensus 14 ~~~pD~vv~D~-~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------ 78 (333)
..+||+||+|. +.++ +..+|+++|||+|.+.+.+....... .+ |..++++. .+ +..+..
T Consensus 92 ~~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~-~p---~~~~~~~~-~~-r~~n~~~~~~~~~~~~~~ 165 (416)
T 1rrv_A 92 AEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPH-LP---PAYDEPTT-PG-VTDIRVLWEERAARFADR 165 (416)
T ss_dssp TTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSS-SC---CCBCSCCC-TT-CCCHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCCCCCCcc-cC---CCCCCCCC-ch-HHHHHHHHHHHHHHHHHH
Confidence 56899999995 5677 89999999999999877653321100 00 00001110 00 000000
Q ss_pred ---ccccccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCCChhHHHHhh
Q 044441 79 ---KINRFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKEDDTKIMDWL 155 (333)
Q Consensus 79 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~l~~~l 155 (333)
.++.+.. ..+......+.+.... . .+++|++++|+++. ..+ ++++|||+..++. ...+.++.+|+
T Consensus 166 ~~~~~~~~~~--~~g~~~~~~~~~~~~~-~-~~l~~~~~~l~~~~-----~~~--~~~~vG~~~~~~~-~~~~~~~~~~l 233 (416)
T 1rrv_A 166 YGPTLNRRRA--EIGLPPVEDVFGYGHG-E-RPLLAADPVLAPLQ-----PDV--DAVQTGAWLLSDE-RPLPPELEAFL 233 (416)
T ss_dssp HHHHHHHHHH--HTTCCCCSCHHHHTTC-S-SCEECSCTTTSCCC-----SSC--CCEECCCCCCCCC-CCCCHHHHHHH
T ss_pred hHHHHHHHHH--HcCCCCCCchhhhccC-C-CeEEccCccccCCC-----CCC--CeeeECCCccCcc-CCCCHHHHHHH
Confidence 0001100 1111111122233333 4 78999999888641 222 7899999976532 33567899999
Q ss_pred cCCCCCeEEEEEecCccc-CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccc
Q 044441 156 SQKEPWSVVFVSFGSEYF-LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQ 234 (333)
Q Consensus 156 ~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 234 (333)
+.. +++|||++||... ...+.+..+++++++.+.+++|.++..... ... .++|+.+.+|+||
T Consensus 234 ~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~-------~~~--------~~~~v~~~~~~~~ 296 (416)
T 1rrv_A 234 AAG--SPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTELV-------LPD--------DRDDCFAIDEVNF 296 (416)
T ss_dssp HSS--SCCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTCC-------CSC--------CCTTEEEESSCCH
T ss_pred hcC--CCeEEEecCCCCccChHHHHHHHHHHHHHCCCeEEEEeCCcccc-------ccC--------CCCCEEEeccCCh
Confidence 765 3699999999864 356778899999999999999998754211 111 3568999999999
Q ss_pred hhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcC
Q 044441 235 AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 235 ~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
.++|+++++ ||||||+||++||+++|+|+|++|+.+||+.||+++++.|+|+.+. .+.++++++.++|+++ +
T Consensus 297 ~~ll~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~----~~~~~~~~l~~~i~~l-~- 368 (416)
T 1rrv_A 297 QALFRRVAA--VIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHD----GPTPTFESLSAALTTV-L- 368 (416)
T ss_dssp HHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECS----SSCCCHHHHHHHHHHH-T-
T ss_pred HHHhccCCE--EEecCChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCC----CCCCCHHHHHHHHHHh-h-
Confidence 999975555 9999999999999999999999999999999999999999999996 3568999999999999 8
Q ss_pred cchHHHHHHHHHHHHHhh
Q 044441 315 EEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 315 ~~~~~~~~~a~~l~~~~~ 332 (333)
+++++++++++++.++
T Consensus 369 --~~~~~~~~~~~~~~~~ 384 (416)
T 1rrv_A 369 --APETRARAEAVAGMVL 384 (416)
T ss_dssp --SHHHHHHHHHHTTTCC
T ss_pred --CHHHHHHHHHHHHHHh
Confidence 7899999999887654
No 10
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=100.00 E-value=1.8e-31 Score=251.26 Aligned_cols=287 Identities=17% Similarity=0.291 Sum_probs=201.1
Q ss_pred hHHHHHHHhhcCCCEEEEc-CCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCC--CCCCCCcccCCCcccccccc
Q 044441 5 KPAFCNILETLKPTLVMYD-LFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINP--SLKYPFFESDFLDRENKKIN 81 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D-~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~ 81 (333)
.+.+.+++++++||+||+| .+.+++..+|+++|||+|.+.+.......+...+...+ ....|. ... .....++
T Consensus 107 ~~~l~~~l~~~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~-~~~~~~~ 182 (415)
T 3rsc_A 107 LRATAEALDGDVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNEHYSFSQDMVTLAGTIDPL---DLP-VFRDTLR 182 (415)
T ss_dssp HHHHHHHHSSSCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCSSCCHHHHHHHHHTCCCGG---GCH-HHHHHHH
T ss_pred HHHHHHHHhccCCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccCccccccccccccccCChh---hHH-HHHHHHH
Confidence 4567788899999999999 88899999999999999998754421110000000000 000000 000 0000111
Q ss_pred cccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCCChhHHHHhhcCCCCC
Q 044441 82 RFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKEDDTKIMDWLSQKEPW 161 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~ 161 (333)
.+.. +.+.... .........+..++.+.+.+++ ....++.+++++||+...+ .+...|....+++
T Consensus 183 ~~~~--~~g~~~~--~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~vGp~~~~~------~~~~~~~~~~~~~ 247 (415)
T 3rsc_A 183 DLLA--EHGLSRS--VVDCWNHVEQLNLVFVPKAFQI-----AGDTFDDRFVFVGPCFDDR------RFLGEWTRPADDL 247 (415)
T ss_dssp HHHH--HTTCCCC--HHHHHTCCCSEEEESSCTTTST-----TGGGCCTTEEECCCCCCCC------GGGCCCCCCSSCC
T ss_pred HHHH--HcCCCCC--hhhhhcCCCCeEEEEcCcccCC-----CcccCCCceEEeCCCCCCc------ccCcCccccCCCC
Confidence 1111 1121110 1112222126677766555543 4556677899999987542 2233465555667
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhcccc
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHG 241 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~ 241 (333)
++|||++||......+.+..+++++...+.+++|.++..... ..+.. .++|+.+.+|+|+.++|.++
T Consensus 248 ~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~-----~~l~~--------~~~~v~~~~~~~~~~ll~~a 314 (415)
T 3rsc_A 248 PVVLVSLGTTFNDRPGFFRDCARAFDGQPWHVVMTLGGQVDP-----AALGD--------LPPNVEAHRWVPHVKVLEQA 314 (415)
T ss_dssp CEEEEECTTTSCCCHHHHHHHHHHHTTSSCEEEEECTTTSCG-----GGGCC--------CCTTEEEESCCCHHHHHHHE
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHhcCCcEEEEEeCCCCCh-----HHhcC--------CCCcEEEEecCCHHHHHhhC
Confidence 899999999987677889999999998888999988753211 11111 45689999999999999987
Q ss_pred ccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHHH
Q 044441 242 RIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIR 321 (333)
Q Consensus 242 ~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~ 321 (333)
++ +|||||+||++|++++|+|+|++|...||..||.++++.|+|+.+. .+.++++++.++|+++|+ +++++
T Consensus 315 d~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~----~~~~~~~~l~~~i~~ll~---~~~~~ 385 (415)
T 3rsc_A 315 TV--CVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLP----GEKADGDTLLAAVGAVAA---DPALL 385 (415)
T ss_dssp EE--EEESCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECC----GGGCCHHHHHHHHHHHHT---CHHHH
T ss_pred CE--EEECCcHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcc----cCCCCHHHHHHHHHHHHc---CHHHH
Confidence 77 9999999999999999999999999999999999999999999997 356899999999999999 78999
Q ss_pred HHHHHHHHHhh
Q 044441 322 RKAKEMSERMR 332 (333)
Q Consensus 322 ~~a~~l~~~~~ 332 (333)
++++++++.+.
T Consensus 386 ~~~~~~~~~~~ 396 (415)
T 3rsc_A 386 ARVEAMRGHVR 396 (415)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888764
No 11
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.97 E-value=2.2e-30 Score=242.38 Aligned_cols=287 Identities=17% Similarity=0.258 Sum_probs=199.6
Q ss_pred hHHHHHHHhhcCCCEEEEc-CCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCC--CCCCCCcccCCCcccccccc
Q 044441 5 KPAFCNILETLKPTLVMYD-LFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINP--SLKYPFFESDFLDRENKKIN 81 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D-~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~ 81 (333)
.+.+.+++++++||+||+| .+.+++..+|+++|||+|.+.+.......+...+...+ ....|. .... ....++
T Consensus 91 ~~~l~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~ 166 (402)
T 3ia7_A 91 LRAAEEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEHYSLFKELWKSNGQRHPA---DVEA-VHSVLV 166 (402)
T ss_dssp HHHHHHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTTBCHHHHHHHHHTCCCGG---GSHH-HHHHHH
T ss_pred HHHHHHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCccccccccccccccccChh---hHHH-HHHHHH
Confidence 4677888899999999999 88899999999999999998754332111000000000 000000 0000 000111
Q ss_pred cccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCCChhHHHHhhcCCCCC
Q 044441 82 RFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKEDDTKIMDWLSQKEPW 161 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~ 161 (333)
.+.. +.+.... .........+..+..+.+++++ ....++.+++++||+.... .+...|+...+++
T Consensus 167 ~~~~--~~g~~~~--~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~vGp~~~~~------~~~~~~~~~~~~~ 231 (402)
T 3ia7_A 167 DLLG--KYGVDTP--VKEYWDEIEGLTIVFLPKSFQP-----FAETFDERFAFVGPTLTGR------DGQPGWQPPRPDA 231 (402)
T ss_dssp HHHH--TTTCCSC--HHHHHTCCCSCEEESSCGGGST-----TGGGCCTTEEECCCCCCC----------CCCCCSSTTC
T ss_pred HHHH--HcCCCCC--hhhhhcCCCCeEEEEcChHhCC-----ccccCCCCeEEeCCCCCCc------ccCCCCcccCCCC
Confidence 1111 2222111 1111222126666666555543 4455677899999987542 1233465555667
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhcccc
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHG 241 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~ 241 (333)
++|||++||......+.+..+++++...+..++|.++..... ..+.. .++|+.+.+|+|+.++|+++
T Consensus 232 ~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~--------~~~~v~~~~~~~~~~ll~~a 298 (402)
T 3ia7_A 232 PVLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFLDP-----AVLGP--------LPPNVEAHQWIPFHSVLAHA 298 (402)
T ss_dssp CEEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTSCG-----GGGCS--------CCTTEEEESCCCHHHHHTTE
T ss_pred CEEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcCCh-----hhhCC--------CCCcEEEecCCCHHHHHhhC
Confidence 899999999987777889999999998888888888753211 11111 35689999999999999988
Q ss_pred ccceeEeecCchhHHHHHHhCcceecccc-ccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHH
Q 044441 242 RIGGFLSHCGWGSAVEGMVFGVPIIAMPM-VYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQI 320 (333)
Q Consensus 242 ~~~~~I~hgG~~s~~eal~~GvP~i~~P~-~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~ 320 (333)
++ +|||||+||++|++++|+|+|++|. ..||..||.++++.|+|+.+. .+.++++++.++++++|+ ++++
T Consensus 299 d~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~----~~~~~~~~l~~~~~~ll~---~~~~ 369 (402)
T 3ia7_A 299 RA--CLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLR----PDQLEPASIREAVERLAA---DSAV 369 (402)
T ss_dssp EE--EEECCCHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECC----GGGCSHHHHHHHHHHHHH---CHHH
T ss_pred CE--EEECCCHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEcc----CCCCCHHHHHHHHHHHHc---CHHH
Confidence 77 9999999999999999999999999 999999999999999999997 356899999999999999 6889
Q ss_pred HHHHHHHHHHhh
Q 044441 321 RRKAKEMSERMR 332 (333)
Q Consensus 321 ~~~a~~l~~~~~ 332 (333)
+++++++++.+.
T Consensus 370 ~~~~~~~~~~~~ 381 (402)
T 3ia7_A 370 RERVRRMQRDIL 381 (402)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999888764
No 12
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.97 E-value=1.4e-30 Score=244.95 Aligned_cols=266 Identities=14% Similarity=0.092 Sum_probs=190.3
Q ss_pred cCCCEEEEcCCchhH---HHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCcccc---c----cccccc
Q 044441 15 LKPTLVMYDLFQPWA---AEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDREN---K----KINRFM 84 (333)
Q Consensus 15 ~~pD~vv~D~~~~~~---~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~----~~~~~~ 84 (333)
.+||+||+|...+.+ ..+|+.+|||++.+...+....+. .+... .+..+. . .++.+.
T Consensus 91 ~~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~~~~~----------~~~~~---~~~~~~~~~~~~~~~~~~~~ 157 (404)
T 3h4t_A 91 EGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSE----------QSQAE---RDMYNQGADRLFGDAVNSHR 157 (404)
T ss_dssp TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGG----------SCHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCccCCCh----------hHHHH---HHHHHHHHHHHhHHHHHHHH
Confidence 379999999554444 789999999999988765421110 00000 000000 0 011111
Q ss_pred CCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCCChhHHHHhhcCCCCCeEE
Q 044441 85 HPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKEDDTKIMDWLSQKEPWSVV 164 (333)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~~~v 164 (333)
. +.++.......... . .+..++++.+.+.+. +.+++++.++|++.... ....++++.+|++.. +++|
T Consensus 158 ~--~lgl~~~~~~~~~~-~-~~~~l~~~~~~l~p~------~~~~~~~~~~G~~~~~~-~~~~~~~l~~~l~~~--~~~V 224 (404)
T 3h4t_A 158 A--SIGLPPVEHLYDYG-Y-TDQPWLAADPVLSPL------RPTDLGTVQTGAWILPD-QRPLSAELEGFLRAG--SPPV 224 (404)
T ss_dssp H--HTTCCCCCCHHHHH-H-CSSCEECSCTTTSCC------CTTCCSCCBCCCCCCCC-CCCCCHHHHHHHHTS--SCCE
T ss_pred H--HcCCCCCcchhhcc-c-cCCeEEeeCcceeCC------CCCCCCeEEeCccccCC-CCCCCHHHHHHHhcC--CCeE
Confidence 1 11222111122211 1 234566776666543 23566889999886543 345678899999753 4699
Q ss_pred EEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccccccc
Q 044441 165 FVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHGRIG 244 (333)
Q Consensus 165 ~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~~~~ 244 (333)
||++||... ..+.+..+++++.+.+.++||.++..... ..+ .++|+.+.+|+|+.++|.++++
T Consensus 225 lv~~Gs~~~-~~~~~~~~~~al~~~~~~vv~~~g~~~~~-------~~~--------~~~~v~~~~~~~~~~ll~~~d~- 287 (404)
T 3h4t_A 225 YVGFGSGPA-PAEAARVAIEAVRAQGRRVVLSSGWAGLG-------RID--------EGDDCLVVGEVNHQVLFGRVAA- 287 (404)
T ss_dssp EECCTTSCC-CTTHHHHHHHHHHHTTCCEEEECTTTTCC-------CSS--------CCTTEEEESSCCHHHHGGGSSE-
T ss_pred EEECCCCCC-cHHHHHHHHHHHHhCCCEEEEEeCCcccc-------ccc--------CCCCEEEecCCCHHHHHhhCcE-
Confidence 999999986 67788999999999999999998754211 111 4569999999999999987666
Q ss_pred eeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHHHHHH
Q 044441 245 GFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRKA 324 (333)
Q Consensus 245 ~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a 324 (333)
||||||+||+.|++++|+|+|++|+.+||+.||.++++.|+|+.+. .+.++++++.++|+++++ ++|++++
T Consensus 288 -~v~~gG~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~----~~~~~~~~l~~ai~~ll~----~~~~~~~ 358 (404)
T 3h4t_A 288 -VVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHD----GPTPTVESLSAALATALT----PGIRARA 358 (404)
T ss_dssp -EEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECS----SSSCCHHHHHHHHHHHTS----HHHHHHH
T ss_pred -EEECCcHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccC----cCCCCHHHHHHHHHHHhC----HHHHHHH
Confidence 9999999999999999999999999999999999999999999996 356899999999999996 6899999
Q ss_pred HHHHHHhh
Q 044441 325 KEMSERMR 332 (333)
Q Consensus 325 ~~l~~~~~ 332 (333)
+++++.++
T Consensus 359 ~~~~~~~~ 366 (404)
T 3h4t_A 359 AAVAGTIR 366 (404)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHHh
Confidence 99987664
No 13
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.97 E-value=2e-30 Score=241.74 Aligned_cols=262 Identities=15% Similarity=0.173 Sum_probs=187.1
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccccccc
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINRFM 84 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 84 (333)
...+.+++++++||+||+|.+.+++..+|+.+|||+|.+...+.. + .. +.......++.+.
T Consensus 96 ~~~l~~~l~~~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~-----------~-~~-------~~~~~~~~~~~~~ 156 (384)
T 2p6p_A 96 LPRMLDFSRAWRPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVD-----------A-DG-------IHPGADAELRPEL 156 (384)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCC-----------C-TT-------THHHHHHHTHHHH
T ss_pred HHHHHHHHhccCCcEEEECcchhhHHHHHHhcCCCEEEeccCCcc-----------c-ch-------hhHHHHHHHHHHH
Confidence 345666778899999999987788999999999999987632210 0 00 0000000000000
Q ss_pred CCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCC-CCeeecCcCcCCCCCCCChhHHHHhhcCCCCCeE
Q 044441 85 HPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLME-NEIVPVGPLVQESIFKEDDTKIMDWLSQKEPWSV 163 (333)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~-~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~~~ 163 (333)
. +.+.. .... ++.+++++.+.++++. .++ .+++++++ .. +.++.+|++..+++++
T Consensus 157 ~--~~g~~-------~~~~-~~~~l~~~~~~~~~~~------~~~~~~~~~~~~--~~------~~~~~~~l~~~~~~~~ 212 (384)
T 2p6p_A 157 S--ELGLE-------RLPA-PDLFIDICPPSLRPAN------AAPARMMRHVAT--SR------QCPLEPWMYTRDTRQR 212 (384)
T ss_dssp H--HTTCS-------SCCC-CSEEEECSCGGGSCTT------SCCCEECCCCCC--CC------CCBCCHHHHCCCSSCE
T ss_pred H--HcCCC-------CCCC-CCeEEEECCHHHCCCC------CCCCCceEecCC--CC------CCCCCchhhcCCCCCE
Confidence 0 00000 0011 4678899888777531 122 24455531 11 1235568876555679
Q ss_pred EEEEecCcccC-----CHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhc
Q 044441 164 VFVSFGSEYFL-----SKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKIL 238 (333)
Q Consensus 164 v~vs~Gs~~~~-----~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll 238 (333)
|||++||.... ..+.+..+++++.+.+.+++|.++... . +.+. ..++|+.+ +|+|+.++|
T Consensus 213 v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~---~-------~~l~----~~~~~v~~-~~~~~~~~l 277 (384)
T 2p6p_A 213 VLVTSGSRVAKESYDRNFDFLRGLAKDLVRWDVELIVAAPDTV---A-------EALR----AEVPQARV-GWTPLDVVA 277 (384)
T ss_dssp EEEECSSSSSCCSSCCCCTTHHHHHHHHHTTTCEEEEECCHHH---H-------HHHH----HHCTTSEE-ECCCHHHHG
T ss_pred EEEECCCCCccccccccHHHHHHHHHHHhcCCcEEEEEeCCCC---H-------HhhC----CCCCceEE-cCCCHHHHH
Confidence 99999998764 447788899999888999999876310 0 1111 13568999 999999999
Q ss_pred cccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchH
Q 044441 239 RHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGK 318 (333)
Q Consensus 239 ~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~ 318 (333)
+++++ ||||||+||++||+++|+|+|++|..+||..||.++++.|+|+.+. .+.++.+++.++|+++|+ ++
T Consensus 278 ~~~d~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~----~~~~~~~~l~~~i~~ll~---~~ 348 (384)
T 2p6p_A 278 PTCDL--LVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALL----PGEDSTEAIADSCQELQA---KD 348 (384)
T ss_dssp GGCSE--EEECSCTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECC----TTCCCHHHHHHHHHHHHH---CH
T ss_pred hhCCE--EEeCCcHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecC----cCCCCHHHHHHHHHHHHc---CH
Confidence 86666 9999999999999999999999999999999999999999999996 356899999999999998 68
Q ss_pred HHHHHHHHHHHHhhC
Q 044441 319 QIRRKAKEMSERMRR 333 (333)
Q Consensus 319 ~~~~~a~~l~~~~~~ 333 (333)
+++++++++++.+++
T Consensus 349 ~~~~~~~~~~~~~~~ 363 (384)
T 2p6p_A 349 TYARRAQDLSREISG 363 (384)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988763
No 14
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.97 E-value=4.4e-30 Score=242.95 Aligned_cols=286 Identities=16% Similarity=0.216 Sum_probs=193.6
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccc--cccccc
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRE--NKKINR 82 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~ 82 (333)
...+.+++++++||+||+|.+.+++..+|+++|||+|.+.+.......+...+. ..........+... ...++.
T Consensus 93 ~~~l~~~l~~~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 168 (430)
T 2iyf_A 93 LPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVA----EPMWREPRQTERGRAYYARFEA 168 (430)
T ss_dssp HHHHHHHHTTSCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCTTHHHHTH----HHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCEEEECCccHHHHHHHHHcCCCEEEEecccccccccccccc----cchhhhhccchHHHHHHHHHHH
Confidence 456778888899999999987788999999999999998865421100000000 00000000000000 000111
Q ss_pred ccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCC-eeecCcCcCCCCCCCChhHHHHhhcCCCCC
Q 044441 83 FMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENE-IVPVGPLVQESIFKEDDTKIMDWLSQKEPW 161 (333)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~-~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~ 161 (333)
++. +.+.. ....+.... .+.+++++.+++++. ...++++ ++++||++.... +...|....+++
T Consensus 169 ~~~--~~g~~--~~~~~~~~~-~~~~l~~~~~~~~~~-----~~~~~~~~v~~vG~~~~~~~------~~~~~~~~~~~~ 232 (430)
T 2iyf_A 169 WLK--ENGIT--EHPDTFASH-PPRSLVLIPKALQPH-----ADRVDEDVYTFVGACQGDRA------EEGGWQRPAGAE 232 (430)
T ss_dssp HHH--HTTCC--SCHHHHHHC-CSSEEECSCGGGSTT-----GGGSCTTTEEECCCCC-----------CCCCCCCTTCS
T ss_pred HHH--HhCCC--CCHHHHhcC-CCcEEEeCcHHhCCC-----cccCCCccEEEeCCcCCCCC------CCCCCccccCCC
Confidence 111 11111 011222334 688999998887763 1345667 999998654311 112355544557
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcC-CCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLS-EVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
++|||++||......+.+..++++++.. +.+++|.++..... ..+.. .++|+.+.+|+|+.++|++
T Consensus 233 ~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~~-----~~l~~--------~~~~v~~~~~~~~~~~l~~ 299 (430)
T 2iyf_A 233 KVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVTP-----AELGE--------LPDNVEVHDWVPQLAILRQ 299 (430)
T ss_dssp EEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC---CG-----GGGCS--------CCTTEEEESSCCHHHHHTT
T ss_pred CeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCCCh-----HHhcc--------CCCCeEEEecCCHHHHhhc
Confidence 7999999999855678889999999885 77888888753211 01111 3468999999999999998
Q ss_pred cccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHH
Q 044441 241 GRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQI 320 (333)
Q Consensus 241 ~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~ 320 (333)
+++ ||||||+||++||+++|+|+|++|..+||..|++++++.|+|+.+. .+.++.+++.++|+++++ ++++
T Consensus 300 ad~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~----~~~~~~~~l~~~i~~ll~---~~~~ 370 (430)
T 2iyf_A 300 ADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLA----TEEATADLLRETALALVD---DPEV 370 (430)
T ss_dssp CSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECC----CC-CCHHHHHHHHHHHHH---CHHH
T ss_pred cCE--EEECCCccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcC----CCCCCHHHHHHHHHHHHc---CHHH
Confidence 887 9999999999999999999999999999999999999999999996 356799999999999998 6788
Q ss_pred HHHHHHHHHHhh
Q 044441 321 RRKAKEMSERMR 332 (333)
Q Consensus 321 ~~~a~~l~~~~~ 332 (333)
++++.++++.+.
T Consensus 371 ~~~~~~~~~~~~ 382 (430)
T 2iyf_A 371 ARRLRRIQAEMA 382 (430)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888776653
No 15
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.97 E-value=5.5e-30 Score=243.41 Aligned_cols=282 Identities=15% Similarity=0.182 Sum_probs=182.2
Q ss_pred chHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCcccccccccc
Q 044441 4 AKPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINRF 83 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 83 (333)
....+.+++++++||+||+|.+.+++..+|+.+|||+|.+...+...... .+.........+......+. ...+..+
T Consensus 132 ~~~~l~~~~~~~~pDlVv~d~~~~~~~~aA~~lgiP~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~l~~~ 208 (441)
T 2yjn_A 132 LIEGMVSFCRKWRPDLVIWEPLTFAAPIAAAVTGTPHARLLWGPDITTRA-RQNFLGLLPDQPEEHREDPL--AEWLTWT 208 (441)
T ss_dssp HHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHHTCCEEEECSSCCHHHHH-HHHHHHHGGGSCTTTCCCHH--HHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEecCcchhHHHHHHHcCCCEEEEecCCCcchhh-hhhhhhhccccccccccchH--HHHHHHH
Confidence 44566677788999999999877899999999999999986543221110 00000000000100000000 0001111
Q ss_pred cCCCCCCc-hhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCC-CCeeecCcCcCCCCCCCChhHHHHhhcCCCCC
Q 044441 84 MHPTANGT-LNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLME-NEIVPVGPLVQESIFKEDDTKIMDWLSQKEPW 161 (333)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~-~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~ 161 (333)
.. +.+. ..... .. . .+.++..+.+.++++ ..++ ..++++++ . .+.++..|++..+++
T Consensus 209 ~~--~~g~~~~~~~---~~-~-~~~~l~~~~~~~~~~------~~~~~~~~~~~~~---~-----~~~~~~~~l~~~~~~ 267 (441)
T 2yjn_A 209 LE--KYGGPAFDEE---VV-V-GQWTIDPAPAAIRLD------TGLKTVGMRYVDY---N-----GPSVVPEWLHDEPER 267 (441)
T ss_dssp HH--HTTCCCCCGG---GT-S-CSSEEECSCGGGSCC------CCCCEEECCCCCC---C-----SSCCCCGGGSSCCSS
T ss_pred HH--HcCCCCCCcc---cc-C-CCeEEEecCccccCC------CCCCCCceeeeCC---C-----CCcccchHhhcCCCC
Confidence 11 1111 11111 11 2 344555554444431 1222 12333321 1 122355788866667
Q ss_pred eEEEEEecCcccC---CHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhc
Q 044441 162 SVVFVSFGSEYFL---SKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKIL 238 (333)
Q Consensus 162 ~~v~vs~Gs~~~~---~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll 238 (333)
++|||++||.... ..+.+..+++++.+.+.+++|.++..... .+.. .++|+.+.+|+|+.++|
T Consensus 268 ~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~------~l~~--------~~~~v~~~~~~~~~~ll 333 (441)
T 2yjn_A 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLE------GVAN--------IPDNVRTVGFVPMHALL 333 (441)
T ss_dssp CEEEEEC----------CCSTTTTHHHHHTSSSEEEECCCTTTTS------SCSS--------CCSSEEECCSCCHHHHG
T ss_pred CEEEEECCCCcccccChHHHHHHHHHHHHcCCCEEEEEECCcchh------hhcc--------CCCCEEEecCCCHHHHH
Confidence 8999999998753 33567788899988899999988743211 1211 35689999999999999
Q ss_pred cccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchH
Q 044441 239 RHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGK 318 (333)
Q Consensus 239 ~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~ 318 (333)
.++++ ||||||+||++|++++|+|+|++|+.+||..||+++++.|+|+.+. .+.++++++.++|+++|+ ++
T Consensus 334 ~~ad~--~V~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~----~~~~~~~~l~~~i~~ll~---~~ 404 (441)
T 2yjn_A 334 PTCAA--TVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALP----VPELTPDQLRESVKRVLD---DP 404 (441)
T ss_dssp GGCSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECC----TTTCCHHHHHHHHHHHHH---CH
T ss_pred hhCCE--EEECCCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcc----cccCCHHHHHHHHHHHhc---CH
Confidence 76666 9999999999999999999999999999999999999999999997 356899999999999998 78
Q ss_pred HHHHHHHHHHHHhh
Q 044441 319 QIRRKAKEMSERMR 332 (333)
Q Consensus 319 ~~~~~a~~l~~~~~ 332 (333)
+++++++++++.++
T Consensus 405 ~~~~~~~~~~~~~~ 418 (441)
T 2yjn_A 405 AHRAGAARMRDDML 418 (441)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988765
No 16
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=203.82 Aligned_cols=164 Identities=18% Similarity=0.307 Sum_probs=139.9
Q ss_pred CChhHHHHhhcCCCCCeEEEEEecCccc-CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCC
Q 044441 146 EDDTKIMDWLSQKEPWSVVFVSFGSEYF-LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNK 224 (333)
Q Consensus 146 ~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 224 (333)
++++++.+|++..+++++|||++||... ...+.+..+++++.+.+.+++|.++..... . .+.
T Consensus 6 ~l~~~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~---------~--------~~~ 68 (170)
T 2o6l_A 6 PLPKEMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGNKPD---------T--------LGL 68 (170)
T ss_dssp CCCHHHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSSCCT---------T--------CCT
T ss_pred CCCHHHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCcCcc---------c--------CCC
Confidence 4678999999877667899999999863 567889999999988889999998753210 1 345
Q ss_pred CeEEeccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHH
Q 044441 225 GMLVQGWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEV 304 (333)
Q Consensus 225 ~~~~~~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l 304 (333)
|+.+.+|+|+.+++.|+.+++||||||+||++||+++|+|+|++|...||..||.++++.|+|+.+. ...++.+++
T Consensus 69 ~v~~~~~~~~~~~l~~~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~----~~~~~~~~l 144 (170)
T 2o6l_A 69 NTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVD----FNTMSSTDL 144 (170)
T ss_dssp TEEEESSCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECC----TTTCCHHHH
T ss_pred cEEEecCCCHHHHhcCCCcCEEEEcCCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEec----cccCCHHHH
Confidence 8999999999999977788889999999999999999999999999999999999999999999997 356899999
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHhhC
Q 044441 305 ARVIKHVLLQEEGKQIRRKAKEMSERMRR 333 (333)
Q Consensus 305 ~~ai~~vl~~~~~~~~~~~a~~l~~~~~~ 333 (333)
.++|+++++ +++|+++++++++.+++
T Consensus 145 ~~~i~~ll~---~~~~~~~a~~~~~~~~~ 170 (170)
T 2o6l_A 145 LNALKRVIN---DPSYKENVMKLSRIQHD 170 (170)
T ss_dssp HHHHHHHHH---CHHHHHHHHHHC-----
T ss_pred HHHHHHHHc---CHHHHHHHHHHHHHhhC
Confidence 999999998 68899999999999875
No 17
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.96 E-value=9.7e-29 Score=231.50 Aligned_cols=264 Identities=16% Similarity=0.195 Sum_probs=171.0
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccccccc
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINRFM 84 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 84 (333)
...+.+++++++||+||+|...+++..+|+.+|||+|.+............ . ...++..++
T Consensus 112 ~~~l~~~~~~~~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~~~~~~~~~~-~------------------~~~~l~~~~ 172 (398)
T 4fzr_A 112 RDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPELIKS-A------------------GVGELAPEL 172 (398)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCHHHHH-H------------------HHHHTHHHH
T ss_pred HHHHHHHHHhCCCCEEEECccccHHHHHHHhhCCCEEEeccCCCCchhhhH-H------------------HHHHHHHHH
Confidence 346788889999999999988889999999999999987754311100000 0 000000000
Q ss_pred CCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCCChhHHHHhhcCCCCCeEE
Q 044441 85 HPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKEDDTKIMDWLSQKEPWSVV 164 (333)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~~~v 164 (333)
. +++... ... .+..+..+.+.++.+ .......++++++.. ...++..|+...+++++|
T Consensus 173 ~--~~~~~~-------~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~v 230 (398)
T 4fzr_A 173 A--ELGLTD-------FPD-PLLSIDVCPPSMEAQ-----PKPGTTKMRYVPYNG-------RNDQVPSWVFEERKQPRL 230 (398)
T ss_dssp H--TTTCSS-------CCC-CSEEEECSCGGGC---------CCCEECCCCCCCC-------SSCCCCHHHHSCCSSCEE
T ss_pred H--HcCCCC-------CCC-CCeEEEeCChhhCCC-----CCCCCCCeeeeCCCC-------CCCCCchhhhcCCCCCEE
Confidence 0 111100 111 344455444444332 111111233443210 122344576665667899
Q ss_pred EEEecCcccC--------CHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchh
Q 044441 165 FVSFGSEYFL--------SKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAK 236 (333)
Q Consensus 165 ~vs~Gs~~~~--------~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ 236 (333)
||++||.... ..+.+..+++++.+.+.+++|..+.... ..+.. .++|+.+.+|+|+.+
T Consensus 231 ~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~------~~l~~--------~~~~v~~~~~~~~~~ 296 (398)
T 4fzr_A 231 CLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLA------QTLQP--------LPEGVLAAGQFPLSA 296 (398)
T ss_dssp ECC----------------CCSHHHHHHHGGGGTCEEEECCCC----------------------CCTTEEEESCCCHHH
T ss_pred EEEccCcccccccccccchHHHHHHHHHHHHhCCCEEEEEeCCcch------hhhcc--------CCCcEEEeCcCCHHH
Confidence 9999998642 3356888999998889999998775321 11111 467999999999999
Q ss_pred hccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcc
Q 044441 237 ILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEE 316 (333)
Q Consensus 237 ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~ 316 (333)
+|.++++ ||||||.||++||+++|+|+|++|..+||..|+.++++.|+|+.+. .+.++++++.++|+++|+
T Consensus 297 ll~~ad~--~v~~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~----~~~~~~~~l~~ai~~ll~--- 367 (398)
T 4fzr_A 297 IMPACDV--VVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVP----WEQAGVESVLAACARIRD--- 367 (398)
T ss_dssp HGGGCSE--EEECCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC-----------CHHHHHHHHHH---
T ss_pred HHhhCCE--EEecCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecC----cccCCHHHHHHHHHHHHh---
Confidence 9998777 9999999999999999999999999999999999999999999997 356789999999999998
Q ss_pred hHHHHHHHHHHHHHhh
Q 044441 317 GKQIRRKAKEMSERMR 332 (333)
Q Consensus 317 ~~~~~~~a~~l~~~~~ 332 (333)
++++++++++.++.+.
T Consensus 368 ~~~~~~~~~~~~~~~~ 383 (398)
T 4fzr_A 368 DSSYVGNARRLAAEMA 383 (398)
T ss_dssp CTHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6899999999988765
No 18
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.95 E-value=1.6e-27 Score=223.33 Aligned_cols=259 Identities=15% Similarity=0.159 Sum_probs=177.2
Q ss_pred chHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCcccccccccc
Q 044441 4 AKPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINRF 83 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 83 (333)
+...+.+++++++||+||+|...+++..+|+.+|||+|.+.......... .... ...+..+
T Consensus 118 ~~~~l~~~l~~~~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~~~~~~~~---------------~~~~----~~~l~~~ 178 (398)
T 3oti_A 118 LVDGTMALVDDYRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRTRGM---------------HRSI----ASFLTDL 178 (398)
T ss_dssp GHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCTTCCCTTH---------------HHHH----HTTCHHH
T ss_pred HHHHHHHHHHHcCCCEEEECchhhHHHHHHHHcCCCEEEEeccCCCccch---------------hhHH----HHHHHHH
Confidence 45678889999999999999888889999999999999876442110000 0000 0000000
Q ss_pred cCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCCChhHHHHhhcCCCCCeE
Q 044441 84 MHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKEDDTKIMDWLSQKEPWSV 163 (333)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~~~ 163 (333)
..++.-.... .+..+..+.+.+..+ .......++++. . . ....+..|+...+++++
T Consensus 179 ----------~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~-~------~~~~~~~~~~~~~~~~~ 234 (398)
T 3oti_A 179 ----------MDKHQVSLPE-PVATIESFPPSLLLE-----AEPEGWFMRWVP-Y-G------GGAVLGDRLPPVPARPE 234 (398)
T ss_dssp ----------HHHTTCCCCC-CSEEECSSCGGGGTT-----SCCCSBCCCCCC-C-C------CCEECCSSCCCCCSSCE
T ss_pred ----------HHHcCCCCCC-CCeEEEeCCHHHCCC-----CCCCCCCccccC-C-C------CCcCCchhhhcCCCCCE
Confidence 0000000111 244444443333321 000111122221 1 0 12233457666566789
Q ss_pred EEEEecCcccC--CHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhcccc
Q 044441 164 VFVSFGSEYFL--SKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHG 241 (333)
Q Consensus 164 v~vs~Gs~~~~--~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~ 241 (333)
|||++||.... ..+.+..+++++.+.+.+++|..+..... .+.. .++|+.+.+|+|+.++|.++
T Consensus 235 v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~~~------~l~~--------~~~~v~~~~~~~~~~ll~~a 300 (398)
T 3oti_A 235 VAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLDIS------PLGT--------LPRNVRAVGWTPLHTLLRTC 300 (398)
T ss_dssp EEECCTTTHHHHHCGGGHHHHHHHHHTSSSEEEEECTTSCCG------GGCS--------CCTTEEEESSCCHHHHHTTC
T ss_pred EEEEcCCCccccCcHHHHHHHHHHHHcCCCEEEEEECCcChh------hhcc--------CCCcEEEEccCCHHHHHhhC
Confidence 99999998542 45678889999988899999988754211 1111 45689999999999999987
Q ss_pred ccceeEeecCchhHHHHHHhCcceeccccccchhhHH--HHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHH
Q 044441 242 RIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNA--KVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQ 319 (333)
Q Consensus 242 ~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na--~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~ 319 (333)
++ ||||||.||++||+++|+|+|++|+.+||..|| .++++.|+|+.+.. +..+++.+. ++|+ +++
T Consensus 301 d~--~v~~~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~----~~~~~~~l~----~ll~---~~~ 367 (398)
T 3oti_A 301 TA--VVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTS----DKVDADLLR----RLIG---DES 367 (398)
T ss_dssp SE--EEECCCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCG----GGCCHHHHH----HHHH---CHH
T ss_pred CE--EEECCCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCC----CCCCHHHHH----HHHc---CHH
Confidence 76 999999999999999999999999999999999 99999999999973 456777776 7887 689
Q ss_pred HHHHHHHHHHHhh
Q 044441 320 IRRKAKEMSERMR 332 (333)
Q Consensus 320 ~~~~a~~l~~~~~ 332 (333)
++++++++++.+.
T Consensus 368 ~~~~~~~~~~~~~ 380 (398)
T 3oti_A 368 LRTAAREVREEMV 380 (398)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 19
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.95 E-value=1.3e-26 Score=216.35 Aligned_cols=263 Identities=14% Similarity=0.210 Sum_probs=180.0
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccccccc
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINRFM 84 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 84 (333)
...+.+++++++||+||+|...+++..+|+.+|||+|.+.............. ...++..+.
T Consensus 103 ~~~l~~~l~~~~PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~~~~~~~~~~~~------------------~~~~~~~~~ 164 (391)
T 3tsa_A 103 LPEYLRLAEAWRPSVLLVDVCALIGRVLGGLLDLPVVLHRWGVDPTAGPFSDR------------------AHELLDPVC 164 (391)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCHHHHHHHHHTTCCEEEECCSCCCTTTHHHHH------------------HHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEeCcchhHHHHHHHHhCCCEEEEecCCccccccccch------------------HHHHHHHHH
Confidence 66778889999999999998888899999999999999764431100000000 000000000
Q ss_pred CCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCCChhHHHHhhcCCCCCeEE
Q 044441 85 HPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKEDDTKIMDWLSQKEPWSVV 164 (333)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~~~v 164 (333)
. +++... ... .+.++..+.++++.. .......++|+ |... ...+..|+...+++++|
T Consensus 165 ~--~~~~~~-------~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~-p~~~-------~~~~~~~~~~~~~~~~v 221 (391)
T 3tsa_A 165 R--HHGLTG-------LPT-PELILDPCPPSLQAS-----DAPQGAPVQYV-PYNG-------SGAFPAWGAARTSARRV 221 (391)
T ss_dssp H--HTTSSS-------SCC-CSEEEECSCGGGSCT-----TSCCCEECCCC-CCCC-------CEECCGGGSSCCSSEEE
T ss_pred H--HcCCCC-------CCC-CceEEEecChhhcCC-----CCCccCCeeee-cCCC-------CcCCCchhhcCCCCCEE
Confidence 0 000000 011 244555444444331 11111123344 2111 12234577666667899
Q ss_pred EEEecCccc--CC-HHHHHHHHHHHhcC-CCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 165 FVSFGSEYF--LS-KDEMHEIASGLLLS-EVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 165 ~vs~Gs~~~--~~-~~~~~~~~~~l~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
+|++||... .. .+.+..++++ .+. +.+++|..+... ...+.. .++|+.+.+|+|+.+++.+
T Consensus 222 lv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~------~~~l~~--------~~~~v~~~~~~~~~~ll~~ 286 (391)
T 3tsa_A 222 CICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPEH------RALLTD--------LPDNARIAESVPLNLFLRT 286 (391)
T ss_dssp EEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGGG------GGGCTT--------CCTTEEECCSCCGGGTGGG
T ss_pred EEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCcc------hhhccc--------CCCCEEEeccCCHHHHHhh
Confidence 999999843 23 6778888888 777 778888876431 111222 4668999999999999976
Q ss_pred cccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccC--CCcCHHHHHHHHHHHhcCcchH
Q 044441 241 GRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKIN--QRLRREEVARVIKHVLLQEEGK 318 (333)
Q Consensus 241 ~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~--~~~~~~~l~~ai~~vl~~~~~~ 318 (333)
+++ ||||||.||++||+++|+|+|++|..+||..|+.++++.|+|+.+. . ...+++++.++++++|+ ++
T Consensus 287 ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~----~~~~~~~~~~l~~ai~~ll~---~~ 357 (391)
T 3tsa_A 287 CEL--VICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLP----DEQAQSDHEQFTDSIATVLG---DT 357 (391)
T ss_dssp CSE--EEECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECC----SHHHHTCHHHHHHHHHHHHT---CT
T ss_pred CCE--EEeCCCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecC----cccccCCHHHHHHHHHHHHc---CH
Confidence 665 9999999999999999999999999999999999999999999996 3 34789999999999999 68
Q ss_pred HHHHHHHHHHHHhh
Q 044441 319 QIRRKAKEMSERMR 332 (333)
Q Consensus 319 ~~~~~a~~l~~~~~ 332 (333)
+++++++++++.+.
T Consensus 358 ~~~~~~~~~~~~~~ 371 (391)
T 3tsa_A 358 GFAAAAIKLSDEIT 371 (391)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999998888764
No 20
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.93 E-value=3e-24 Score=201.47 Aligned_cols=269 Identities=17% Similarity=0.217 Sum_probs=182.4
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccccccc
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINRFM 84 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 84 (333)
...+.+++++++||+||+|...+++..+|+++|||+|.+............ . . ...+..+.
T Consensus 119 ~~~l~~~l~~~~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~~~~~~~~~~---------------~--~--~~~~~~~~ 179 (412)
T 3otg_A 119 FDELQPVIERLRPDLVVQEISNYGAGLAALKAGIPTICHGVGRDTPDDLTR---------------S--I--EEEVRGLA 179 (412)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCSCCCCSHHHH---------------H--H--HHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEECchhhHHHHHHHHcCCCEEEecccccCchhhhH---------------H--H--HHHHHHHH
Confidence 367788899999999999977788889999999999986544211000000 0 0 00000000
Q ss_pred CCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCC---CeeecCcCcCCCCCCCChhHHHHh-hcCCCC
Q 044441 85 HPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMEN---EIVPVGPLVQESIFKEDDTKIMDW-LSQKEP 160 (333)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~---~~~~vGpl~~~~~~~~~~~~l~~~-l~~~~~ 160 (333)
. +.+.....+. .... ++.++..+.+.++.. ...+.. .++++++-. ......| ....++
T Consensus 180 ~--~~g~~~~~~~--~~~~-~d~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 241 (412)
T 3otg_A 180 Q--RLGLDLPPGR--IDGF-GNPFIDIFPPSLQEP-----EFRARPRRHELRPVPFAE--------QGDLPAWLSSRDTA 241 (412)
T ss_dssp H--HTTCCCCSSC--CGGG-GCCEEECSCGGGSCH-----HHHTCTTEEECCCCCCCC--------CCCCCGGGGGSCTT
T ss_pred H--HcCCCCCccc--ccCC-CCeEEeeCCHHhcCC-----cccCCCCcceeeccCCCC--------CCCCCCccccccCC
Confidence 0 0000000000 0122 455666654444432 111111 122222210 1123345 333455
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
+++|++++||......+.+..+++++.+.+..++|.++..... ..+.. .++|+.+.+|+|+.++|++
T Consensus 242 ~~~vlv~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~-----~~l~~--------~~~~v~~~~~~~~~~~l~~ 308 (412)
T 3otg_A 242 RPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDV-----SGLGE--------VPANVRLESWVPQAALLPH 308 (412)
T ss_dssp SCEEEEECTTTTCSCHHHHHHHHHHHHTSSSEEEEECCSSCCC-----TTCCC--------CCTTEEEESCCCHHHHGGG
T ss_pred CCEEEEEcCCCCcCcHHHHHHHHHHHHcCCCEEEEEECCCCCh-----hhhcc--------CCCcEEEeCCCCHHHHHhc
Confidence 6799999999975668889999999998889999988754311 11212 3568999999999999998
Q ss_pred cccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHH
Q 044441 241 GRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQI 320 (333)
Q Consensus 241 ~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~ 320 (333)
+++ ||+|||++|++||+++|+|+|++|..+||..|+..+++.|+|+.+. .+.++++++.++|+++|+ ++++
T Consensus 309 ad~--~v~~~g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~----~~~~~~~~l~~ai~~ll~---~~~~ 379 (412)
T 3otg_A 309 VDL--VVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLL----PDNISPDSVSGAAKRLLA---EESY 379 (412)
T ss_dssp CSE--EEESCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECC----GGGCCHHHHHHHHHHHHH---CHHH
T ss_pred CcE--EEECCchHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecC----cccCCHHHHHHHHHHHHh---CHHH
Confidence 777 9999999999999999999999999999999999999999999997 356799999999999998 6788
Q ss_pred HHHHHHHHHHhh
Q 044441 321 RRKAKEMSERMR 332 (333)
Q Consensus 321 ~~~a~~l~~~~~ 332 (333)
++++.+.++.+.
T Consensus 380 ~~~~~~~~~~~~ 391 (412)
T 3otg_A 380 RAGARAVAAEIA 391 (412)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888887776653
No 21
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.86 E-value=1.2e-20 Score=174.68 Aligned_cols=244 Identities=16% Similarity=0.131 Sum_probs=154.2
Q ss_pred HHHHHHhhcCCCEEEEcC--CchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccccccc
Q 044441 7 AFCNILETLKPTLVMYDL--FQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINRFM 84 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~--~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 84 (333)
...+++++++||+||++. .+..+..+|+.+|||+|..-... .|
T Consensus 83 ~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP~vihe~n~-----------------~~------------------ 127 (365)
T 3s2u_A 83 QALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQNA-----------------VA------------------ 127 (365)
T ss_dssp HHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCCEEEEECSS-----------------SC------------------
T ss_pred HHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCCEEEEecch-----------------hh------------------
Confidence 456788999999999993 34456788999999999753211 00
Q ss_pred CCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCCChhHHHHhhcCCCCCeEE
Q 044441 85 HPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKEDDTKIMDWLSQKEPWSVV 164 (333)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~~~v 164 (333)
+. ..++ .... ++.++. ++++..+ ...+..++|+.+........ .......++++++
T Consensus 128 -----G~--~nr~--l~~~-a~~v~~-~~~~~~~---------~~~k~~~~g~pvr~~~~~~~----~~~~~~~~~~~~i 183 (365)
T 3s2u_A 128 -----GT--ANRS--LAPI-ARRVCE-AFPDTFP---------ASDKRLTTGNPVRGELFLDA----HARAPLTGRRVNL 183 (365)
T ss_dssp -----CH--HHHH--HGGG-CSEEEE-SSTTSSC---------C---CEECCCCCCGGGCCCT----TSSCCCTTSCCEE
T ss_pred -----hh--HHHh--hccc-cceeee-ccccccc---------CcCcEEEECCCCchhhccch----hhhcccCCCCcEE
Confidence 00 0111 1112 344433 2221111 12456777755432110000 0111223446699
Q ss_pred EEEecCcccCCHHHHHHHHHHHhcC----CCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch-hhcc
Q 044441 165 FVSFGSEYFLSKDEMHEIASGLLLS----EVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA-KILR 239 (333)
Q Consensus 165 ~vs~Gs~~~~~~~~~~~~~~~l~~~----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~-~ll~ 239 (333)
+|..||.+.. ...+.+.+++... +..++|.++.... +...++.+....++.+.+|+++. ++++
T Consensus 184 lv~gGs~g~~--~~~~~~~~al~~l~~~~~~~vi~~~G~~~~----------~~~~~~~~~~~~~~~v~~f~~dm~~~l~ 251 (365)
T 3s2u_A 184 LVLGGSLGAE--PLNKLLPEALAQVPLEIRPAIRHQAGRQHA----------EITAERYRTVAVEADVAPFISDMAAAYA 251 (365)
T ss_dssp EECCTTTTCS--HHHHHHHHHHHTSCTTTCCEEEEECCTTTH----------HHHHHHHHHTTCCCEEESCCSCHHHHHH
T ss_pred EEECCcCCcc--ccchhhHHHHHhcccccceEEEEecCcccc----------ccccceecccccccccccchhhhhhhhc
Confidence 9999998753 2333444555443 4567777664321 12222222256688889999986 7899
Q ss_pred ccccceeEeecCchhHHHHHHhCcceeccccc----cchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCc
Q 044441 240 HGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMV----YEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQE 315 (333)
Q Consensus 240 ~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~----~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~ 315 (333)
.+|+ +|||+|.+|+.|++++|+|+|.+|+. .+|..||+.+++.|+|+.+. .+.++++.+.++|.++|+|.
T Consensus 252 ~aDl--vI~raG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~----~~~~~~~~L~~~i~~ll~d~ 325 (365)
T 3s2u_A 252 WADL--VICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLP----QKSTGAAELAAQLSEVLMHP 325 (365)
T ss_dssp HCSE--EEECCCHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECC----TTTCCHHHHHHHHHHHHHCT
T ss_pred cceE--EEecCCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEee----cCCCCHHHHHHHHHHHHCCH
Confidence 7777 99999999999999999999999874 58999999999999999997 46789999999999999852
Q ss_pred -chHHHHHHHHHH
Q 044441 316 -EGKQIRRKAKEM 327 (333)
Q Consensus 316 -~~~~~~~~a~~l 327 (333)
.-++++++++++
T Consensus 326 ~~~~~m~~~a~~~ 338 (365)
T 3s2u_A 326 ETLRSMADQARSL 338 (365)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 234555555544
No 22
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=99.68 E-value=1.1e-16 Score=136.80 Aligned_cols=144 Identities=15% Similarity=0.192 Sum_probs=97.4
Q ss_pred cCCCCCeEEEEEecCcccCCHHHHHHH-----HHHHhcCC-CcEEEEEecCCCcchh-hhhc---------CchhH----
Q 044441 156 SQKEPWSVVFVSFGSEYFLSKDEMHEI-----ASGLLLSE-VSFIRVLRLHPDEKIT-IEEA---------LPQGF---- 215 (333)
Q Consensus 156 ~~~~~~~~v~vs~Gs~~~~~~~~~~~~-----~~~l~~~~-~~~i~~~~~~~~~~~~-~~~~---------l~~~~---- 215 (333)
...+++++|||+.||... -++.+..+ +++|.+.+ .++++.++........ .... +|.+.
T Consensus 23 ~~~~~~~~VlVtgGS~~~-~n~li~~vl~~~~l~~L~~~~~~~vv~q~G~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 101 (224)
T 2jzc_A 23 EGIIEEKALFVTCGATVP-FPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYSSEFEHLVQERGGQRESQKIPIDQFGCG 101 (224)
T ss_dssp -CCCCSCCEEEECCSCCS-CHHHHHHHTSHHHHHHHHTTTCCCEEECCCSSSCCCCCSHHHHHTCEECSCCCSSCTTCTT
T ss_pred CCCCCCCEEEEEcCCchH-HHHHHHHHHHHHHHHHHhcCCCeEEEEEECCCchhhHHHHHHhhhcccccccccccccccc
Confidence 333456799999999742 34555544 38887777 7899998865421000 0000 11000
Q ss_pred --HHH--HHhcCCCeEEeccccch-hhcc-ccccceeEeecCchhHHHHHHhCcceeccccc----cchhhHHHHHhHhC
Q 044441 216 --AEE--IERNNKGMLVQGWVPQA-KILR-HGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMV----YEQSRNAKVVVDIG 285 (333)
Q Consensus 216 --~~~--~~~~~~~~~~~~~~p~~-~ll~-~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~----~DQ~~na~~~~~~G 285 (333)
.++ .....-++.+.+|+++. ++++ .+++ +|||||+||++|++++|+|+|++|.. .||..||+++++.|
T Consensus 102 ~~~~~~~~~~~~~~v~v~~f~~~m~~~l~~~Adl--vIshaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G 179 (224)
T 2jzc_A 102 DTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDL--VISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELG 179 (224)
T ss_dssp CSCEEEESTTTSSEEEECCSSSSHHHHHHHHCSC--EEESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHS
T ss_pred ccccccccccCCceEEEeeccchHHHHHHhcCCE--EEECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCC
Confidence 000 00001245567888886 7888 8888 99999999999999999999999984 47999999999999
Q ss_pred eeeEeecCccCCCcCHHHHHHHHHHH
Q 044441 286 MGMDVPRDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 286 ~g~~l~~~~~~~~~~~~~l~~ai~~v 311 (333)
+|+.+ +.+++.++|+++
T Consensus 180 ~~~~~---------~~~~L~~~i~~l 196 (224)
T 2jzc_A 180 YVWSC---------APTETGLIAGLR 196 (224)
T ss_dssp CCCEE---------CSCTTTHHHHHH
T ss_pred CEEEc---------CHHHHHHHHHHH
Confidence 99876 445666677666
No 23
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.61 E-value=4.5e-14 Score=129.72 Aligned_cols=228 Identities=15% Similarity=0.088 Sum_probs=144.0
Q ss_pred HHHHHHHhhcCCCEEEEcCC--chhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCcccccccccc
Q 044441 6 PAFCNILETLKPTLVMYDLF--QPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINRF 83 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 83 (333)
..+.+++++.+||+|+++.. ...+..+++.+|+|+|....... +
T Consensus 86 ~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~-----------------~----------------- 131 (364)
T 1f0k_A 86 RQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGI-----------------A----------------- 131 (364)
T ss_dssp HHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSSS-----------------C-----------------
T ss_pred HHHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEecCCC-----------------C-----------------
Confidence 45677788899999999843 34566788899999986532210 0
Q ss_pred cCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCCCCeeecCcCcCCCCCCCChhHHHHhhcCCCCCeE
Q 044441 84 MHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLMENEIVPVGPLVQESIFKEDDTKIMDWLSQKEPWSV 163 (333)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~~~ 163 (333)
. ...+ ..... ++.+++.+... ++ ++..+|+-+....... . .....+...+++++
T Consensus 132 ----~----~~~~--~~~~~-~d~v~~~~~~~------------~~-~~~~i~n~v~~~~~~~-~-~~~~~~~~~~~~~~ 185 (364)
T 1f0k_A 132 ----G----LTNK--WLAKI-ATKVMQAFPGA------------FP-NAEVVGNPVRTDVLAL-P-LPQQRLAGREGPVR 185 (364)
T ss_dssp ----C----HHHH--HHTTT-CSEEEESSTTS------------SS-SCEECCCCCCHHHHTS-C-CHHHHHTTCCSSEE
T ss_pred ----c----HHHH--HHHHh-CCEEEecChhh------------cC-CceEeCCccchhhccc-c-hhhhhcccCCCCcE
Confidence 0 0001 11223 56666644211 22 4556664322100000 0 11122333334567
Q ss_pred EEEEecCcccCCHHHHHHHHHHHhcC--CCcEEEEEecCCCcchhhhhcCchhHHHHHHh-cCCCeEEeccccc-hhhcc
Q 044441 164 VFVSFGSEYFLSKDEMHEIASGLLLS--EVSFIRVLRLHPDEKITIEEALPQGFAEEIER-NNKGMLVQGWVPQ-AKILR 239 (333)
Q Consensus 164 v~vs~Gs~~~~~~~~~~~~~~~l~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~p~-~~ll~ 239 (333)
+++..|+... .+....+++++... +..+++.++... . +.+.+..++ ..+++.+.+|+++ ..+++
T Consensus 186 il~~~g~~~~--~k~~~~li~a~~~l~~~~~~l~i~G~~~-~---------~~l~~~~~~~~~~~v~~~g~~~~~~~~~~ 253 (364)
T 1f0k_A 186 VLVVGGSQGA--RILNQTMPQVAAKLGDSVTIWHQSGKGS-Q---------QSVEQAYAEAGQPQHKVTEFIDDMAAAYA 253 (364)
T ss_dssp EEEECTTTCC--HHHHHHHHHHHHHHGGGEEEEEECCTTC-H---------HHHHHHHHHTTCTTSEEESCCSCHHHHHH
T ss_pred EEEEcCchHh--HHHHHHHHHHHHHhcCCcEEEEEcCCch-H---------HHHHHHHhhcCCCceEEecchhhHHHHHH
Confidence 8888888753 44444455555443 455566666432 0 122222211 2257999999955 47888
Q ss_pred ccccceeEeecCchhHHHHHHhCcceeccccc---cchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHH
Q 044441 240 HGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMV---YEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 240 ~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~---~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~v 311 (333)
.+++ +|+++|.++++||+++|+|+|+.|.. .||..|+..+.+.|.|+.+. .++.+.+++.++|.++
T Consensus 254 ~ad~--~v~~sg~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~g~~~~----~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 254 WADV--VVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIE----QPQLSVDAVANTLAGW 322 (364)
T ss_dssp HCSE--EEECCCHHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTTSEEECC----GGGCCHHHHHHHHHTC
T ss_pred hCCE--EEECCchHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCCcEEEec----cccCCHHHHHHHHHhc
Confidence 7777 99999999999999999999999987 79999999999999999996 3456799999999988
No 24
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=99.49 E-value=4.6e-12 Score=112.31 Aligned_cols=116 Identities=12% Similarity=0.076 Sum_probs=87.9
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch-hhcc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA-KILR 239 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~-~ll~ 239 (333)
.+.|+|++|+... ......++++|.... ++.++++..... .+.+.+..+ ...|+.+..|+++. +++.
T Consensus 157 ~~~ILv~~GG~d~--~~l~~~vl~~L~~~~-~i~vv~G~~~~~--------~~~l~~~~~-~~~~v~v~~~~~~m~~~m~ 224 (282)
T 3hbm_A 157 KYDFFICMGGTDI--KNLSLQIASELPKTK-IISIATSSSNPN--------LKKLQKFAK-LHNNIRLFIDHENIAKLMN 224 (282)
T ss_dssp CEEEEEECCSCCT--TCHHHHHHHHSCTTS-CEEEEECTTCTT--------HHHHHHHHH-TCSSEEEEESCSCHHHHHH
T ss_pred CCeEEEEECCCch--hhHHHHHHHHhhcCC-CEEEEECCCchH--------HHHHHHHHh-hCCCEEEEeCHHHHHHHHH
Confidence 4689999997643 235667788886654 455666544221 122222221 23589999999987 6889
Q ss_pred ccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEee
Q 044441 240 HGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVP 291 (333)
Q Consensus 240 ~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~ 291 (333)
.+++ +||+|| +|++|+++.|+|+|++|...+|..||+.+++.|+++.+.
T Consensus 225 ~aDl--vI~~gG-~T~~E~~~~g~P~i~ip~~~~Q~~nA~~l~~~G~~~~~~ 273 (282)
T 3hbm_A 225 ESNK--LIISAS-SLVNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYK 273 (282)
T ss_dssp TEEE--EEEESS-HHHHHHHHTTCCEEEECCSGGGHHHHHHHHHTTCEEECG
T ss_pred HCCE--EEECCc-HHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHCCCEEEcc
Confidence 7777 999999 899999999999999999999999999999999999996
No 25
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.18 E-value=1.6e-10 Score=107.77 Aligned_cols=252 Identities=14% Similarity=0.156 Sum_probs=134.4
Q ss_pred chHHHHHHHhhcCCCEEEE--cCCc-hhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccc
Q 044441 4 AKPAFCNILETLKPTLVMY--DLFQ-PWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKI 80 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv~--D~~~-~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 80 (333)
....+.+++++++||+|++ |..+ +.+..+|+++|||.+.+..... . + ..
T Consensus 99 ~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ag~r-s-------------~-----~~--------- 150 (396)
T 3dzc_A 99 ILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGLR-T-------------G-----NI--------- 150 (396)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCCC-C-------------S-----CT---------
T ss_pred HHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCcc-c-------------c-----cc---------
Confidence 3456788899999999986 3333 4457889999999775432110 0 0 00
Q ss_pred ccccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccC-CCCeeecCc-CcCCCCCCC-C-------hhH
Q 044441 81 NRFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLM-ENEIVPVGP-LVQESIFKE-D-------DTK 150 (333)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~-~~~~~~vGp-l~~~~~~~~-~-------~~~ 150 (333)
....+ -...+.....-++.+++.+-..-+ .+ .+... +.++..+|. ......... . ..+
T Consensus 151 -------~~~~~-~~~~r~~~~~~a~~~~~~se~~~~--~l--~~~G~~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~ 218 (396)
T 3dzc_A 151 -------YSPWP-EEGNRKLTAALTQYHFAPTDTSRA--NL--LQENYNAENIFVTGNTVIDALLAVREKIHTDMDLQAT 218 (396)
T ss_dssp -------TSSTT-HHHHHHHHHHTCSEEEESSHHHHH--HH--HHTTCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHH
T ss_pred -------ccCCc-HHHHHHHHHHhcCEEECCCHHHHH--HH--HHcCCCcCcEEEECCcHHHHHHHhhhhcccchhhHHH
Confidence 00000 001111212215777776632111 11 11122 246888884 332100000 0 123
Q ss_pred HHHhhcC-CCCCeEEEEEecCcccCCHHHHHHHHHHHhc-----CCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCC
Q 044441 151 IMDWLSQ-KEPWSVVFVSFGSEYFLSKDEMHEIASGLLL-----SEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNK 224 (333)
Q Consensus 151 l~~~l~~-~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~-----~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 224 (333)
+.+.++. .+++++++++.+-...... .+..+++++.. .+..+++.++.+ .. .. +.+.+.. ...+
T Consensus 219 ~r~~lg~l~~~~~~vlv~~hR~~~~~~-~~~~ll~A~~~l~~~~~~~~~v~~~g~~--~~--~~----~~l~~~~-~~~~ 288 (396)
T 3dzc_A 219 LESQFPMLDASKKLILVTGHRRESFGG-GFERICQALITTAEQHPECQILYPVHLN--PN--VR----EPVNKLL-KGVS 288 (396)
T ss_dssp HHHTCTTCCTTSEEEEEECSCBCCCTT-HHHHHHHHHHHHHHHCTTEEEEEECCBC--HH--HH----HHHHHHT-TTCT
T ss_pred HHHHhCccCCCCCEEEEEECCcccchh-HHHHHHHHHHHHHHhCCCceEEEEeCCC--hH--HH----HHHHHHH-cCCC
Confidence 3333431 2345677777632222222 24556666543 245555554421 10 00 1111111 0245
Q ss_pred CeEEeccccc---hhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCH
Q 044441 225 GMLVQGWVPQ---AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRR 301 (333)
Q Consensus 225 ~~~~~~~~p~---~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~ 301 (333)
++.+.++++. ..+++.+++ +|+..| |.+.||+++|+|+|+..-.+++. .+.+.|.++.+. .++
T Consensus 289 ~v~~~~~lg~~~~~~l~~~ad~--vv~~SG-g~~~EA~a~G~PvV~~~~~~~~~----e~v~~G~~~lv~-------~d~ 354 (396)
T 3dzc_A 289 NIVLIEPQQYLPFVYLMDRAHI--ILTDSG-GIQEEAPSLGKPVLVMRETTERP----EAVAAGTVKLVG-------TNQ 354 (396)
T ss_dssp TEEEECCCCHHHHHHHHHHCSE--EEESCS-GGGTTGGGGTCCEEECCSSCSCH----HHHHHTSEEECT-------TCH
T ss_pred CEEEeCCCCHHHHHHHHHhcCE--EEECCc-cHHHHHHHcCCCEEEccCCCcch----HHHHcCceEEcC-------CCH
Confidence 7888777653 367887777 999987 66689999999999985444442 245678887773 268
Q ss_pred HHHHHHHHHHhcCcchHHHHH
Q 044441 302 EEVARVIKHVLLQEEGKQIRR 322 (333)
Q Consensus 302 ~~l~~ai~~vl~~~~~~~~~~ 322 (333)
+++.+++.++++ ++..++
T Consensus 355 ~~l~~ai~~ll~---d~~~~~ 372 (396)
T 3dzc_A 355 QQICDALSLLLT---DPQAYQ 372 (396)
T ss_dssp HHHHHHHHHHHH---CHHHHH
T ss_pred HHHHHHHHHHHc---CHHHHH
Confidence 999999999998 444444
No 26
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.11 E-value=9e-10 Score=102.94 Aligned_cols=242 Identities=12% Similarity=0.117 Sum_probs=130.7
Q ss_pred chHHHHHHHhhcCCCEEEE--cC-CchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccc
Q 044441 4 AKPAFCNILETLKPTLVMY--DL-FQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKI 80 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv~--D~-~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 80 (333)
....+.+++++++||+|++ |. ..+++..+|+++|||.+.+..... . + ..
T Consensus 102 ~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~aglr-s-------------~-----~~--------- 153 (403)
T 3ot5_A 102 VMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAGLR-T-------------W-----NK--------- 153 (403)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCCC-C-------------S-----CT---------
T ss_pred HHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCcc-c-------------c-----cc---------
Confidence 3456788899999999986 22 334467899999999765432110 0 0 00
Q ss_pred ccccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhh-hccC-CCCeeecCcC-cCC---CCCCCChhHHHHh
Q 044441 81 NRFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYF-PSLM-ENEIVPVGPL-VQE---SIFKEDDTKIMDW 154 (333)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~-~~~~-~~~~~~vGpl-~~~---~~~~~~~~~l~~~ 154 (333)
....+ -...+.....-++.+++.+-.. .+.+ +... +.++..+|.. ... ........+..+.
T Consensus 154 -------~~~~p-~~~~r~~~~~~a~~~~~~se~~-----~~~l~~~Gi~~~~i~vvGn~~~D~~~~~~~~~~~~~~~~~ 220 (403)
T 3ot5_A 154 -------YSPFP-EEMNRQLTGVMADIHFSPTKQA-----KENLLAEGKDPATIFVTGNTAIDALKTTVQKDYHHPILEN 220 (403)
T ss_dssp -------TSSTT-HHHHHHHHHHHCSEEEESSHHH-----HHHHHHTTCCGGGEEECCCHHHHHHHHHSCTTCCCHHHHS
T ss_pred -------ccCCc-HHHHHHHHHHhcCEEECCCHHH-----HHHHHHcCCCcccEEEeCCchHHHHHhhhhhhcchHHHHh
Confidence 00000 0011111222146666665221 1112 1222 2468888843 221 0011111233333
Q ss_pred hcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhc-----CCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEe
Q 044441 155 LSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLL-----SEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQ 229 (333)
Q Consensus 155 l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~-----~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 229 (333)
+ +++++++++.|...... +.+..+++++.. .+..+++..+.+ .. . ....++.-...+++.+.
T Consensus 221 l---~~~~~vlv~~~r~~~~~-~~l~~ll~a~~~l~~~~~~~~~v~~~~~~--~~--~-----~~~l~~~~~~~~~v~l~ 287 (403)
T 3ot5_A 221 L---GDNRLILMTAHRRENLG-EPMQGMFEAVREIVESREDTELVYPMHLN--PA--V-----REKAMAILGGHERIHLI 287 (403)
T ss_dssp C---TTCEEEEECCCCHHHHT-THHHHHHHHHHHHHHHCTTEEEEEECCSC--HH--H-----HHHHHHHHTTCTTEEEE
T ss_pred c---cCCCEEEEEeCcccccC-cHHHHHHHHHHHHHHhCCCceEEEecCCC--HH--H-----HHHHHHHhCCCCCEEEe
Confidence 3 34567777766422211 123445555432 244555554321 10 0 01111110124688888
Q ss_pred ccccc---hhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHH
Q 044441 230 GWVPQ---AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVAR 306 (333)
Q Consensus 230 ~~~p~---~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ 306 (333)
++++. ..+++.+++ +|+..|..+ .||+++|+|+|++|-.+++.. +.+.|.|+.+. .+++++.+
T Consensus 288 ~~l~~~~~~~l~~~ad~--vv~~SGg~~-~EA~a~g~PvV~~~~~~~~~e----~v~~g~~~lv~-------~d~~~l~~ 353 (403)
T 3ot5_A 288 EPLDAIDFHNFLRKSYL--VFTDSGGVQ-EEAPGMGVPVLVLRDTTERPE----GIEAGTLKLIG-------TNKENLIK 353 (403)
T ss_dssp CCCCHHHHHHHHHHEEE--EEECCHHHH-HHGGGTTCCEEECCSSCSCHH----HHHHTSEEECC-------SCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCE--EEECCccHH-HHHHHhCCCEEEecCCCcchh----heeCCcEEEcC-------CCHHHHHH
Confidence 88863 367887776 998875333 799999999999975555543 35779888884 28999999
Q ss_pred HHHHHhc
Q 044441 307 VIKHVLL 313 (333)
Q Consensus 307 ai~~vl~ 313 (333)
++.++++
T Consensus 354 ai~~ll~ 360 (403)
T 3ot5_A 354 EALDLLD 360 (403)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9999998
No 27
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.03 E-value=3.7e-08 Score=90.71 Aligned_cols=259 Identities=13% Similarity=0.061 Sum_probs=140.8
Q ss_pred hHHHHHHHhhcCCCEEEEcCC--chhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccccc
Q 044441 5 KPAFCNILETLKPTLVMYDLF--QPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINR 82 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 82 (333)
...+.+++++.+||+|++... ......+++++|+|.+.+.........
T Consensus 75 ~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------------------------------ 124 (394)
T 3okp_A 75 AHAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVGW------------------------------ 124 (394)
T ss_dssp HHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHHHH------------------------------
T ss_pred HHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchhhh------------------------------
Confidence 457788899999999997633 334556688899995543332211100
Q ss_pred ccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccC--CCCeeecCcCcCCCCCCC----ChhHHHHhhc
Q 044441 83 FMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLM--ENEIVPVGPLVQESIFKE----DDTKIMDWLS 156 (333)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~--~~~~~~vGpl~~~~~~~~----~~~~l~~~l~ 156 (333)
................ ++.+++.|....+. +...+ ..++..+.+-+......+ ....+.+.++
T Consensus 125 -----~~~~~~~~~~~~~~~~-~d~ii~~s~~~~~~-----~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~ 193 (394)
T 3okp_A 125 -----SMLPGSRQSLRKIGTE-VDVLTYISQYTLRR-----FKSAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLG 193 (394)
T ss_dssp -----TTSHHHHHHHHHHHHH-CSEEEESCHHHHHH-----HHHHHCSSSEEEECCCCBCTTTSCCCCHHHHHHHHHHTT
T ss_pred -----hhcchhhHHHHHHHHh-CCEEEEcCHHHHHH-----HHHhcCCCCCeEEecCCcCHHHcCCCCchhhHHHHHhcC
Confidence 0000011122334455 88888877443221 22211 235555554332211111 1233344444
Q ss_pred CCCCCeEEEEEecCccc-CCHHHHHHHHHHHhcC--CCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEecccc
Q 044441 157 QKEPWSVVFVSFGSEYF-LSKDEMHEIASGLLLS--EVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVP 233 (333)
Q Consensus 157 ~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~~l~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p 233 (333)
..++ ..+++..|+... -..+.+.+++..+.+. +..+++ ++..... +.+.+......+++.+.+++|
T Consensus 194 ~~~~-~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i-~G~g~~~---------~~l~~~~~~~~~~v~~~g~~~ 262 (394)
T 3okp_A 194 FTDT-TPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLI-VGSGRYE---------STLRRLATDVSQNVKFLGRLE 262 (394)
T ss_dssp CCTT-CCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEE-ECCCTTH---------HHHHHHTGGGGGGEEEEESCC
T ss_pred CCcC-ceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEE-EcCchHH---------HHHHHHHhcccCeEEEcCCCC
Confidence 3333 366777787653 2334444444444332 344443 4432211 111111111346899999997
Q ss_pred ch---hhccccccceeEe-----------ecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCc
Q 044441 234 QA---KILRHGRIGGFLS-----------HCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRL 299 (333)
Q Consensus 234 ~~---~ll~~~~~~~~I~-----------hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~ 299 (333)
+. .++..+++ +|. -|..++++||+++|+|+|+.+..+ ....+.+ |.|+.+. .-
T Consensus 263 ~~~~~~~~~~ad~--~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~----~~e~i~~-~~g~~~~------~~ 329 (394)
T 3okp_A 263 YQDMINTLAAADI--FAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGG----APETVTP-ATGLVVE------GS 329 (394)
T ss_dssp HHHHHHHHHHCSE--EEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSSTT----GGGGCCT-TTEEECC------TT
T ss_pred HHHHHHHHHhCCE--EEecCccccccccccccCcHHHHHHHcCCCEEEeCCCC----hHHHHhc-CCceEeC------CC
Confidence 65 57777777 776 555679999999999999987543 2222233 4788885 24
Q ss_pred CHHHHHHHHHHHhcC-cchHHHHHHHHHHH
Q 044441 300 RREEVARVIKHVLLQ-EEGKQIRRKAKEMS 328 (333)
Q Consensus 300 ~~~~l~~ai~~vl~~-~~~~~~~~~a~~l~ 328 (333)
+.+++.++|.+++++ +..+.+.+++++..
T Consensus 330 d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 359 (394)
T 3okp_A 330 DVDKLSELLIELLDDPIRRAAMGAAGRAHV 359 (394)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 799999999999985 22234555555543
No 28
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.02 E-value=5.7e-09 Score=95.99 Aligned_cols=78 Identities=23% Similarity=0.357 Sum_probs=59.8
Q ss_pred CCCeEEeccccc---hhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCc
Q 044441 223 NKGMLVQGWVPQ---AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRL 299 (333)
Q Consensus 223 ~~~~~~~~~~p~---~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~ 299 (333)
.+++.+.++++. ..+++.+++ ||+++| |.+.||+++|+|+|+.+..+++.. +.+.|.|+.+. .
T Consensus 254 ~~~v~~~g~~g~~~~~~~~~~ad~--~v~~S~-g~~lEA~a~G~PvI~~~~~~~~~~----~~~~g~g~lv~-------~ 319 (376)
T 1v4v_A 254 VRNFVLLDPLEYGSMAALMRASLL--LVTDSG-GLQEEGAALGVPVVVLRNVTERPE----GLKAGILKLAG-------T 319 (376)
T ss_dssp CTTEEEECCCCHHHHHHHHHTEEE--EEESCH-HHHHHHHHTTCCEEECSSSCSCHH----HHHHTSEEECC-------S
T ss_pred CCCEEEECCCCHHHHHHHHHhCcE--EEECCc-CHHHHHHHcCCCEEeccCCCcchh----hhcCCceEECC-------C
Confidence 357888855554 478887777 999884 556699999999999876565544 34668898883 2
Q ss_pred CHHHHHHHHHHHhcC
Q 044441 300 RREEVARVIKHVLLQ 314 (333)
Q Consensus 300 ~~~~l~~ai~~vl~~ 314 (333)
+++++.++|.+++++
T Consensus 320 d~~~la~~i~~ll~d 334 (376)
T 1v4v_A 320 DPEGVYRVVKGLLEN 334 (376)
T ss_dssp CHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhC
Confidence 899999999999983
No 29
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=98.97 E-value=5.7e-09 Score=96.16 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=81.1
Q ss_pred CCeEEEEEecCcccCCHHHHHHHHHHHhc----C-CCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccc
Q 044441 160 PWSVVFVSFGSEYFLSKDEMHEIASGLLL----S-EVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQ 234 (333)
Q Consensus 160 ~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~----~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 234 (333)
++++++++.|...... +.+..+++++.. . +..+++..+.. . . +-+.+.+... ..+++.+.++++.
T Consensus 204 ~~~~vl~~~gr~~~~~-kg~~~li~a~~~l~~~~~~~~l~i~~g~~--~--~----~~~~l~~~~~-~~~~v~~~g~~~~ 273 (384)
T 1vgv_A 204 DKKMILVTGHRRESFG-RGFEEICHALADIATTHQDIQIVYPVHLN--P--N----VREPVNRILG-HVKNVILIDPQEY 273 (384)
T ss_dssp TSEEEEEECCCBSSCC-HHHHHHHHHHHHHHHHCTTEEEEEECCBC--H--H----HHHHHHHHHT-TCTTEEEECCCCH
T ss_pred CCCEEEEEeCCccccc-hHHHHHHHHHHHHHhhCCCeEEEEEcCCC--H--H----HHHHHHHHhh-cCCCEEEeCCCCH
Confidence 4567888888765322 234444444432 2 34444433321 1 0 0011111110 2358888666654
Q ss_pred ---hhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHH
Q 044441 235 ---AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 235 ---~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~v 311 (333)
..+++.+++ ||+.+| ++++||+++|+|+|+.+..+.. ..+.+.|.|+.+. . +++++.++|.++
T Consensus 274 ~~~~~~~~~ad~--~v~~Sg-~~~lEA~a~G~PvI~~~~~~~~----~e~v~~g~g~lv~-----~--d~~~la~~i~~l 339 (384)
T 1vgv_A 274 LPFVWLMNHAWL--ILTDSG-GIQEEAPSLGKPVLVMRDTTER----PEAVTAGTVRLVG-----T--DKQRIVEEVTRL 339 (384)
T ss_dssp HHHHHHHHHCSE--EEESSS-TGGGTGGGGTCCEEEESSCCSC----HHHHHHTSEEEEC-----S--SHHHHHHHHHHH
T ss_pred HHHHHHHHhCcE--EEECCc-chHHHHHHcCCCEEEccCCCCc----chhhhCCceEEeC-----C--CHHHHHHHHHHH
Confidence 367887777 999885 4588999999999999874432 2345668999884 2 899999999999
Q ss_pred hcC
Q 044441 312 LLQ 314 (333)
Q Consensus 312 l~~ 314 (333)
+++
T Consensus 340 l~d 342 (384)
T 1vgv_A 340 LKD 342 (384)
T ss_dssp HHC
T ss_pred HhC
Confidence 983
No 30
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=98.97 E-value=1.8e-08 Score=93.43 Aligned_cols=246 Identities=17% Similarity=0.123 Sum_probs=134.5
Q ss_pred chHHHHHHHhhcCCCEEEE--cCCchhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCcccccccc
Q 044441 4 AKPAFCNILETLKPTLVMY--DLFQPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKIN 81 (333)
Q Consensus 4 ~~~~l~~~l~~~~pD~vv~--D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 81 (333)
+...+.+++++++||+||+ |..+.++..+|.++|||.+-+.... . + +
T Consensus 82 ~~~~l~~~l~~~kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~eagl-r--s-----------~----------------- 130 (385)
T 4hwg_A 82 VIEKVDEVLEKEKPDAVLFYGDTNSCLSAIAAKRRKIPIFHMEAGN-R--C-----------F----------------- 130 (385)
T ss_dssp HHHHHHHHHHHHCCSEEEEESCSGGGGGHHHHHHTTCCEEEESCCC-C--C-----------S-----------------
T ss_pred HHHHHHHHHHhcCCcEEEEECCchHHHHHHHHHHhCCCEEEEeCCC-c--c-----------c-----------------
Confidence 4567888999999999886 3333344889999999966543211 0 0 0
Q ss_pred cccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccC-CCCeeecCc-CcCCCC---CCCChhHHHHhhc
Q 044441 82 RFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLM-ENEIVPVGP-LVQESI---FKEDDTKIMDWLS 156 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~-~~~~~~vGp-l~~~~~---~~~~~~~l~~~l~ 156 (333)
+...+ -...+.....-++..++.+-..-+. + .+... +.++..+|. ....-. ......++.+.++
T Consensus 131 ------~~~~p-ee~nR~~~~~~a~~~~~~te~~~~~--l--~~~G~~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lg 199 (385)
T 4hwg_A 131 ------DQRVP-EEINRKIIDHISDVNITLTEHARRY--L--IAEGLPAELTFKSGSHMPEVLDRFMPKILKSDILDKLS 199 (385)
T ss_dssp ------CTTST-HHHHHHHHHHHCSEEEESSHHHHHH--H--HHTTCCGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTT
T ss_pred ------cccCc-HHHHHHHHHhhhceeecCCHHHHHH--H--HHcCCCcCcEEEECCchHHHHHHhhhhcchhHHHHHcC
Confidence 00000 0011112222156666665321111 1 11222 246888984 332100 0001123334444
Q ss_pred CCCCCeEEEEEecCcccCC-HHHHHHHHHHHhcC----CCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEecc
Q 044441 157 QKEPWSVVFVSFGSEYFLS-KDEMHEIASGLLLS----EVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGW 231 (333)
Q Consensus 157 ~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~~l~~~----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 231 (333)
-.+ ++.+++++|...... .+.+..+++++... +..+|+..... . .+....+. ++ . ...+++.+.+.
T Consensus 200 l~~-~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~~p~--~-~~~l~~~~-~~---~-~~~~~v~l~~~ 270 (385)
T 4hwg_A 200 LTP-KQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFSTHPR--T-KKRLEDLE-GF---K-ELGDKIRFLPA 270 (385)
T ss_dssp CCT-TSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEECHH--H-HHHHHTSG-GG---G-GTGGGEEECCC
T ss_pred CCc-CCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEECChH--H-HHHHHHHH-HH---h-cCCCCEEEEcC
Confidence 333 458888888754322 24566677766542 56677754311 0 00000010 00 0 02347777655
Q ss_pred ccc---hhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHH
Q 044441 232 VPQ---AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVI 308 (333)
Q Consensus 232 ~p~---~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai 308 (333)
++. ..+++++++ +||-.|. ...||.+.|+|+|+++-..+.+. ..+.|.++.+. .++++|.+++
T Consensus 271 lg~~~~~~l~~~adl--vvt~SGg-v~~EA~alG~Pvv~~~~~ter~e----~v~~G~~~lv~-------~d~~~i~~ai 336 (385)
T 4hwg_A 271 FSFTDYVKLQMNAFC--ILSDSGT-ITEEASILNLPALNIREAHERPE----GMDAGTLIMSG-------FKAERVLQAV 336 (385)
T ss_dssp CCHHHHHHHHHHCSE--EEECCTT-HHHHHHHTTCCEEECSSSCSCTH----HHHHTCCEECC-------SSHHHHHHHH
T ss_pred CCHHHHHHHHHhCcE--EEECCcc-HHHHHHHcCCCEEEcCCCccchh----hhhcCceEEcC-------CCHHHHHHHH
Confidence 543 468887777 9999876 46999999999999976544221 35678888774 3799999999
Q ss_pred HHHhcC
Q 044441 309 KHVLLQ 314 (333)
Q Consensus 309 ~~vl~~ 314 (333)
.+++++
T Consensus 337 ~~ll~d 342 (385)
T 4hwg_A 337 KTITEE 342 (385)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 999975
No 31
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=98.86 E-value=9.2e-07 Score=81.63 Aligned_cols=259 Identities=15% Similarity=0.114 Sum_probs=135.8
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHH-Hc--CCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCccccccc
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAY-QY--HIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKI 80 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~-~l--giP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 80 (333)
..+.+++++.+||+|++....+ ....++. .+ ++|+|.......... .. .
T Consensus 89 ~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~--~~-~----------------------- 142 (394)
T 2jjm_A 89 SKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITV--LG-S----------------------- 142 (394)
T ss_dssp HHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHT--TT-T-----------------------
T ss_pred HHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcccc--cC-C-----------------------
Confidence 4567788889999999873322 2333444 34 599988665432110 00 0
Q ss_pred ccccCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccC--CCCeeecCcCcCCCC-CCCChhHHHHhhcC
Q 044441 81 NRFMHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLM--ENEIVPVGPLVQESI-FKEDDTKIMDWLSQ 157 (333)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~--~~~~~~vGpl~~~~~-~~~~~~~l~~~l~~ 157 (333)
... ........+.. ++.+++.|....+. +...+ +.++..+..-+.... .......+.+-++.
T Consensus 143 -------~~~--~~~~~~~~~~~-ad~ii~~s~~~~~~-----~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~ 207 (394)
T 2jjm_A 143 -------DPS--LNNLIRFGIEQ-SDVVTAVSHSLINE-----THELVKPNKDIQTVYNFIDERVYFKRDMTQLKKEYGI 207 (394)
T ss_dssp -------CTT--THHHHHHHHHH-SSEEEESCHHHHHH-----HHHHTCCSSCEEECCCCCCTTTCCCCCCHHHHHHTTC
T ss_pred -------CHH--HHHHHHHHHhh-CCEEEECCHHHHHH-----HHHhhCCcccEEEecCCccHHhcCCcchHHHHHHcCC
Confidence 000 01112223455 78888877442221 22222 245666654333211 11122334444433
Q ss_pred CCCCeEEEEEecCccc-CCHHHHHHHHHHHhc-CCCcEEEEEecCCCcchhhhhcCchhHHHHHHh--cCCCeEEecccc
Q 044441 158 KEPWSVVFVSFGSEYF-LSKDEMHEIASGLLL-SEVSFIRVLRLHPDEKITIEEALPQGFAEEIER--NNKGMLVQGWVP 233 (333)
Q Consensus 158 ~~~~~~v~vs~Gs~~~-~~~~~~~~~~~~l~~-~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~p 233 (333)
.++ ..+++..|+... -..+.+...+..+.+ .+.. ++.++..... +.+.+..++ ..+++.+.++..
T Consensus 208 ~~~-~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~-l~i~G~g~~~---------~~l~~~~~~~~l~~~v~~~g~~~ 276 (394)
T 2jjm_A 208 SES-EKILIHISNFRKVKRVQDVVQAFAKIVTEVDAK-LLLVGDGPEF---------CTILQLVKNLHIEDRVLFLGKQD 276 (394)
T ss_dssp C----CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCE-EEEECCCTTH---------HHHHHHHHTTTCGGGBCCCBSCS
T ss_pred CCC-CeEEEEeeccccccCHHHHHHHHHHHHhhCCCE-EEEECCchHH---------HHHHHHHHHcCCCCeEEEeCchh
Confidence 222 255666787653 233343333344433 2444 3444532211 112222211 135777777655
Q ss_pred ch-hhccccccceeE----eecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHH
Q 044441 234 QA-KILRHGRIGGFL----SHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVI 308 (333)
Q Consensus 234 ~~-~ll~~~~~~~~I----~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai 308 (333)
+. .+++.+++ +| .-|..++++||+++|+|+|+.+..+ ....+++.+.|+.+.. -+.+++.++|
T Consensus 277 ~~~~~~~~adv--~v~ps~~e~~~~~~~EAma~G~PvI~~~~~~----~~e~v~~~~~g~~~~~------~d~~~la~~i 344 (394)
T 2jjm_A 277 NVAELLAMSDL--MLLLSEKESFGLVLLEAMACGVPCIGTRVGG----IPEVIQHGDTGYLCEV------GDTTGVADQA 344 (394)
T ss_dssp CTHHHHHTCSE--EEECCSCCSCCHHHHHHHHTTCCEEEECCTT----STTTCCBTTTEEEECT------TCHHHHHHHH
T ss_pred hHHHHHHhCCE--EEeccccCCCchHHHHHHhcCCCEEEecCCC----hHHHhhcCCceEEeCC------CCHHHHHHHH
Confidence 43 68887777 77 4566789999999999999987532 2233344457888852 3789999999
Q ss_pred HHHhcCc-chHHHHHHHHHHH
Q 044441 309 KHVLLQE-EGKQIRRKAKEMS 328 (333)
Q Consensus 309 ~~vl~~~-~~~~~~~~a~~l~ 328 (333)
.+++++. ....+.+++++..
T Consensus 345 ~~l~~~~~~~~~~~~~~~~~~ 365 (394)
T 2jjm_A 345 IQLLKDEELHRNMGERARESV 365 (394)
T ss_dssp HHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHH
Confidence 9999842 1234555555544
No 32
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=98.77 E-value=1.1e-06 Score=81.08 Aligned_cols=236 Identities=11% Similarity=0.013 Sum_probs=130.3
Q ss_pred HHHHHHHhhcCCCEEEEcCC--chhHHHHHHHcCCCeEEEechhHHHHHhhhccccCCCCCCCCcccCCCcccccccccc
Q 044441 6 PAFCNILETLKPTLVMYDLF--QPWAAEAAYQYHIAAVLFLTISAVAGSYLLHNIINPSLKYPFFESDFLDRENKKINRF 83 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 83 (333)
..+.+++++.+||+|++... ...+..+++..|+|+|.......... .....+
T Consensus 97 ~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~--------------------------~~~~~~ 150 (406)
T 2gek_A 97 RKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTTKS--------------------------LTLSVF 150 (406)
T ss_dssp HHHHHHHHHHCCSEEEEECCCSSSHHHHHHHHEESSEEEEECCCCCSH--------------------------HHHHHH
T ss_pred HHHHHHHHhcCCCEEEECCccchHHHHHHHHhcCCCEEEEEcCcchhh--------------------------hhHHHH
Confidence 56778888899999997732 33456677888999998654421000 000000
Q ss_pred cCCCCCCchhhHhHHHhhhccCcEEEecchhhhchhHHhhhhccCC-CCeeecCcCcCCCCCCCChhHHHHhh--cCCCC
Q 044441 84 MHPTANGTLNKDRNLKAFELSCKFVFIKTSREIESKYLDYFPSLME-NEIVPVGPLVQESIFKEDDTKIMDWL--SQKEP 160 (333)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~le~~~~~~~~~~~~-~~~~~vGpl~~~~~~~~~~~~l~~~l--~~~~~ 160 (333)
...+...... ++.+++.|....+. +...++ .++ .+.+-+.. +....-- ...++
T Consensus 151 ----------~~~~~~~~~~-~d~ii~~s~~~~~~-----~~~~~~~~~~-vi~~~v~~-------~~~~~~~~~~~~~~ 206 (406)
T 2gek_A 151 ----------QGILRPYHEK-IIGRIAVSDLARRW-----QMEALGSDAV-EIPNGVDV-------ASFADAPLLDGYPR 206 (406)
T ss_dssp ----------HSTTHHHHTT-CSEEEESSHHHHHH-----HHHHHSSCEE-ECCCCBCH-------HHHHTCCCCTTCSC
T ss_pred ----------HHHHHHHHhh-CCEEEECCHHHHHH-----HHHhcCCCcE-EecCCCCh-------hhcCCCchhhhccC
Confidence 0011133455 78888777432221 222222 234 44322211 0000000 00011
Q ss_pred CeEEEEEecCc-cc-CCHHHHHHHHHHHhcC--CCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch-
Q 044441 161 WSVVFVSFGSE-YF-LSKDEMHEIASGLLLS--EVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA- 235 (333)
Q Consensus 161 ~~~v~vs~Gs~-~~-~~~~~~~~~~~~l~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~- 235 (333)
...+++..|+. .. -..+.+..++..+.+. +..+ ..++.... +.+.+..+...+++.+.+++++.
T Consensus 207 ~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l-~i~G~~~~----------~~l~~~~~~~~~~v~~~g~~~~~~ 275 (406)
T 2gek_A 207 EGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEI-LIVGRGDE----------DELREQAGDLAGHLRFLGQVDDAT 275 (406)
T ss_dssp SSCEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEE-EEESCSCH----------HHHHHHTGGGGGGEEECCSCCHHH
T ss_pred CCeEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEE-EEEcCCcH----------HHHHHHHHhccCcEEEEecCCHHH
Confidence 12566777877 43 2334444444444432 3343 34443211 12222221124689999999875
Q ss_pred --hhccccccceeEeec----C-chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHH
Q 044441 236 --KILRHGRIGGFLSHC----G-WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVI 308 (333)
Q Consensus 236 --~ll~~~~~~~~I~hg----G-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai 308 (333)
.++..+++ +|.-. | .++++||+++|+|+|+.+. ......+.+.+.|+.+. .-+.+++.++|
T Consensus 276 ~~~~~~~adv--~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~e~i~~~~~g~~~~------~~d~~~l~~~i 343 (406)
T 2gek_A 276 KASAMRSADV--YCAPHLGGESFGIVLVEAMAAGTAVVASDL----DAFRRVLADGDAGRLVP------VDDADGMAAAL 343 (406)
T ss_dssp HHHHHHHSSE--EEECCCSCCSSCHHHHHHHHHTCEEEECCC----HHHHHHHTTTTSSEECC------TTCHHHHHHHH
T ss_pred HHHHHHHCCE--EEecCCCCCCCchHHHHHHHcCCCEEEecC----CcHHHHhcCCCceEEeC------CCCHHHHHHHH
Confidence 67887777 66442 3 4589999999999999865 34556666667888884 24789999999
Q ss_pred HHHhcC
Q 044441 309 KHVLLQ 314 (333)
Q Consensus 309 ~~vl~~ 314 (333)
.+++++
T Consensus 344 ~~l~~~ 349 (406)
T 2gek_A 344 IGILED 349 (406)
T ss_dssp HHHHHC
T ss_pred HHHHcC
Confidence 999984
No 33
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=98.75 E-value=1e-06 Score=80.64 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=58.1
Q ss_pred CCeEEeccccch---hhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcC
Q 044441 224 KGMLVQGWVPQA---KILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLR 300 (333)
Q Consensus 224 ~~~~~~~~~p~~---~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~ 300 (333)
+++.+.++++.. .+++.+++ +|+..| +.++||+++|+|+|+....+.. ..+.+.|.|+.+. . +
T Consensus 263 ~~v~~~g~~~~~~~~~~~~~ad~--~v~~sg-~~~lEA~a~G~Pvi~~~~~~~~----~e~v~~g~g~~v~------~-d 328 (375)
T 3beo_A 263 GRIHLIEPLDVIDFHNVAARSYL--MLTDSG-GVQEEAPSLGVPVLVLRDTTER----PEGIEAGTLKLAG------T-D 328 (375)
T ss_dssp TTEEEECCCCHHHHHHHHHTCSE--EEECCH-HHHHHHHHHTCCEEECSSCCSC----HHHHHTTSEEECC------S-C
T ss_pred CCEEEeCCCCHHHHHHHHHhCcE--EEECCC-ChHHHHHhcCCCEEEecCCCCC----ceeecCCceEEcC------C-C
Confidence 588887777653 67777776 998873 5688999999999998543332 2345668898884 2 8
Q ss_pred HHHHHHHHHHHhcC
Q 044441 301 REEVARVIKHVLLQ 314 (333)
Q Consensus 301 ~~~l~~ai~~vl~~ 314 (333)
.+++.++|.+++++
T Consensus 329 ~~~la~~i~~ll~~ 342 (375)
T 3beo_A 329 EETIFSLADELLSD 342 (375)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 89999999999983
No 34
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=98.64 E-value=3.1e-06 Score=79.08 Aligned_cols=94 Identities=18% Similarity=0.130 Sum_probs=67.2
Q ss_pred CCCeEEeccccch---hhccccccceeEee----cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCcc
Q 044441 223 NKGMLVQGWVPQA---KILRHGRIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKI 295 (333)
Q Consensus 223 ~~~~~~~~~~p~~---~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~ 295 (333)
.+++.+.+++++. .++..+++ +|.. |..++++||+++|+|+|+.+. ......+++.+.|+.+.
T Consensus 305 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i~~~~~g~~~~---- 374 (438)
T 3c48_A 305 EKRIRFLDPRPPSELVAVYRAADI--VAVPSFNESFGLVAMEAQASGTPVIAARV----GGLPIAVAEGETGLLVD---- 374 (438)
T ss_dssp TTTEEEECCCCHHHHHHHHHHCSE--EEECCSCCSSCHHHHHHHHTTCCEEEESC----TTHHHHSCBTTTEEEES----
T ss_pred CCcEEEcCCCChHHHHHHHHhCCE--EEECccccCCchHHHHHHHcCCCEEecCC----CChhHHhhCCCcEEECC----
Confidence 4689999999764 57787777 7654 335689999999999999764 33455555666888885
Q ss_pred CCCcCHHHHHHHHHHHhcCc-chHHHHHHHHHHH
Q 044441 296 NQRLRREEVARVIKHVLLQE-EGKQIRRKAKEMS 328 (333)
Q Consensus 296 ~~~~~~~~l~~ai~~vl~~~-~~~~~~~~a~~l~ 328 (333)
.-+.+++.++|.+++++. ....+.+++++..
T Consensus 375 --~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~ 406 (438)
T 3c48_A 375 --GHSPHAWADALATLLDDDETRIRMGEDAVEHA 406 (438)
T ss_dssp --SCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 247899999999999842 1234555555544
No 35
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=98.59 E-value=8.2e-06 Score=75.16 Aligned_cols=95 Identities=16% Similarity=0.297 Sum_probs=66.4
Q ss_pred CeEEeccccch-hhccccccceeEee-----cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCC
Q 044441 225 GMLVQGWVPQA-KILRHGRIGGFLSH-----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQR 298 (333)
Q Consensus 225 ~~~~~~~~p~~-~ll~~~~~~~~I~h-----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~ 298 (333)
++.+.++.... .+++.+++ ++.- +|..+++||+++|+|+|+-|..++.......+.+.|.++.+.
T Consensus 261 ~v~~~~~~~dl~~~y~~aDv--~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~~~G~l~~~~------- 331 (374)
T 2xci_A 261 DVILVDRFGILKELYPVGKI--AIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVK------- 331 (374)
T ss_dssp SEEECCSSSCHHHHGGGEEE--EEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHHHTTCEEECC-------
T ss_pred cEEEECCHHHHHHHHHhCCE--EEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHHHHCCCEEEeC-------
Confidence 45555554443 67776665 6542 345789999999999998777666666666666678877763
Q ss_pred cCHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Q 044441 299 LRREEVARVIKHVLLQEEGKQIRRKAKEMSE 329 (333)
Q Consensus 299 ~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~ 329 (333)
+.+++.++|.++++++..+.+.+++++..+
T Consensus 332 -d~~~La~ai~~ll~d~~r~~mg~~ar~~~~ 361 (374)
T 2xci_A 332 -NETELVTKLTELLSVKKEIKVEEKSREIKG 361 (374)
T ss_dssp -SHHHHHHHHHHHHHSCCCCCHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 789999999999975223456666666543
No 36
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=98.49 E-value=1.6e-05 Score=75.83 Aligned_cols=94 Identities=17% Similarity=0.065 Sum_probs=65.7
Q ss_pred CCCeEEeccccch---hhcccc----ccceeEee----cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEee
Q 044441 223 NKGMLVQGWVPQA---KILRHG----RIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVP 291 (333)
Q Consensus 223 ~~~~~~~~~~p~~---~ll~~~----~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~ 291 (333)
.+++.+.+++|+. .+++.+ ++ +|.- |-..+++||+++|+|+|+.... .....+.+...|+.+.
T Consensus 334 ~~~V~~~G~v~~~~~~~~~~~a~~~~dv--~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~----g~~e~v~~~~~g~l~~ 407 (499)
T 2r60_A 334 RGKVSMFPLNSQQELAGCYAYLASKGSV--FALTSFYEPFGLAPVEAMASGLPAVVTRNG----GPAEILDGGKYGVLVD 407 (499)
T ss_dssp BTTEEEEECCSHHHHHHHHHHHHHTTCE--EEECCSCBCCCSHHHHHHHTTCCEEEESSB----HHHHHTGGGTSSEEEC
T ss_pred CceEEECCCCCHHHHHHHHHhcCcCCCE--EEECcccCCCCcHHHHHHHcCCCEEEecCC----CHHHHhcCCceEEEeC
Confidence 4679999999765 577766 66 7643 3346899999999999998643 3445555556788885
Q ss_pred cCccCCCcCHHHHHHHHHHHhcCc-chHHHHHHHHHHH
Q 044441 292 RDKINQRLRREEVARVIKHVLLQE-EGKQIRRKAKEMS 328 (333)
Q Consensus 292 ~~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~~~a~~l~ 328 (333)
. -+.+++.++|.+++++. ....+.+++++..
T Consensus 408 ~------~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 439 (499)
T 2r60_A 408 P------EDPEDIARGLLKAFESEETWSAYQEKGKQRV 439 (499)
T ss_dssp T------TCHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred C------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 2 47899999999999842 1234455555443
No 37
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=98.42 E-value=8.8e-05 Score=68.80 Aligned_cols=147 Identities=14% Similarity=0.051 Sum_probs=89.7
Q ss_pred EEEEEecCcc-c-CCHHHHHHHHHHHhcCC--CcE-EEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch--
Q 044441 163 VVFVSFGSEY-F-LSKDEMHEIASGLLLSE--VSF-IRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA-- 235 (333)
Q Consensus 163 ~v~vs~Gs~~-~-~~~~~~~~~~~~l~~~~--~~~-i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~-- 235 (333)
.+++..|+.. . -..+.+.+++..+.+.+ .++ +..+|... . . ..+.+.+..++...++.+.+|+++.
T Consensus 252 ~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~-~-~-----~~~~l~~~~~~~~~~~~~~g~~~~~~~ 324 (439)
T 3fro_A 252 VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGD-P-E-----LEGWARSLEEKHGNVKVITEMLSREFV 324 (439)
T ss_dssp EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCC-H-H-----HHHHHHHHHHHCTTEEEECSCCCHHHH
T ss_pred cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCC-h-h-----HHHHHHHHHhhcCCEEEEcCCCCHHHH
Confidence 6777888876 4 34555555555555532 233 33344321 1 0 0011111111133556677888885
Q ss_pred -hhccccccceeEee----cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHH
Q 044441 236 -KILRHGRIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKH 310 (333)
Q Consensus 236 -~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~ 310 (333)
.++..+++ +|.- |-.++++||+++|+|+|+.... .....++ .|.|..+. .-+.+++.++|.+
T Consensus 325 ~~~~~~adv--~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~----~~~e~~~-~~~g~~~~------~~d~~~la~~i~~ 391 (439)
T 3fro_A 325 RELYGSVDF--VIIPSYFEPFGLVALEAMCLGAIPIASAVG----GLRDIIT-NETGILVK------AGDPGELANAILK 391 (439)
T ss_dssp HHHHTTCSE--EEECBSCCSSCHHHHHHHHTTCEEEEESST----HHHHHCC-TTTCEEEC------TTCHHHHHHHHHH
T ss_pred HHHHHHCCE--EEeCCCCCCccHHHHHHHHCCCCeEEcCCC----CcceeEE-cCceEEeC------CCCHHHHHHHHHH
Confidence 46777776 6643 3347999999999999997543 2333333 46888885 2478999999999
Q ss_pred Hhc-C-cchHHHHHHHHHHHH
Q 044441 311 VLL-Q-EEGKQIRRKAKEMSE 329 (333)
Q Consensus 311 vl~-~-~~~~~~~~~a~~l~~ 329 (333)
+++ + +..+.+.+++++..+
T Consensus 392 ll~~~~~~~~~~~~~~~~~~~ 412 (439)
T 3fro_A 392 ALELSRSDLSKFRENCKKRAM 412 (439)
T ss_dssp HHHHTTTTTHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHh
Confidence 998 5 445677777777553
No 38
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=98.42 E-value=3.4e-05 Score=71.52 Aligned_cols=91 Identities=22% Similarity=0.156 Sum_probs=64.9
Q ss_pred CCCeEEecccc---c---hhhccccccceeEeec----CchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeec
Q 044441 223 NKGMLVQGWVP---Q---AKILRHGRIGGFLSHC----GWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPR 292 (333)
Q Consensus 223 ~~~~~~~~~~p---~---~~ll~~~~~~~~I~hg----G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~ 292 (333)
.+++.+.+|++ + ..+++.+++ +|... ..++++||+++|+|+|+.+.. .+...+++.+.|+.+.
T Consensus 292 ~~~V~~~G~~~~~~~~~~~~~~~~ad~--~v~ps~~E~~~~~~lEAma~G~PvI~~~~~----g~~e~i~~~~~g~l~~- 364 (416)
T 2x6q_A 292 DYDVKVLTNLIGVHAREVNAFQRASDV--ILQMSIREGFGLTVTEAMWKGKPVIGRAVG----GIKFQIVDGETGFLVR- 364 (416)
T ss_dssp CTTEEEEEGGGTCCHHHHHHHHHHCSE--EEECCSSCSSCHHHHHHHHTTCCEEEESCH----HHHHHCCBTTTEEEES-
T ss_pred CCcEEEecccCCCCHHHHHHHHHhCCE--EEECCCcCCCccHHHHHHHcCCCEEEccCC----CChhheecCCCeEEEC-
Confidence 46899988776 2 257776776 77554 457899999999999997653 3555566667888882
Q ss_pred CccCCCcCHHHHHHHHHHHhcCc-chHHHHHHHHHH
Q 044441 293 DKINQRLRREEVARVIKHVLLQE-EGKQIRRKAKEM 327 (333)
Q Consensus 293 ~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~~~a~~l 327 (333)
+.+++.++|.+++++. ....+.+++++.
T Consensus 365 -------d~~~la~~i~~ll~~~~~~~~~~~~a~~~ 393 (416)
T 2x6q_A 365 -------DANEAVEVVLYLLKHPEVSKEMGAKAKER 393 (416)
T ss_dssp -------SHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 7899999999999841 123445555544
No 39
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=98.36 E-value=3e-06 Score=69.32 Aligned_cols=140 Identities=13% Similarity=0.115 Sum_probs=88.0
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcC-CCcEEEEEecCCCcchhhhhcCchhHHHHHH----hcCCCeEEeccccc---
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLS-EVSFIRVLRLHPDEKITIEEALPQGFAEEIE----RNNKGMLVQGWVPQ--- 234 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~p~--- 234 (333)
.+++..|+... .+.+..+++++... +..+++. +..... +.+.+..+ ...+++.+.+|+++
T Consensus 24 ~~i~~~G~~~~--~Kg~~~li~a~~~l~~~~l~i~-G~~~~~---------~~l~~~~~~~~~~l~~~v~~~g~~~~~e~ 91 (177)
T 2f9f_A 24 DFWLSVNRIYP--EKRIELQLEVFKKLQDEKLYIV-GWFSKG---------DHAERYARKIMKIAPDNVKFLGSVSEEEL 91 (177)
T ss_dssp SCEEEECCSSG--GGTHHHHHHHHHHCTTSCEEEE-BCCCTT---------STHHHHHHHHHHHSCTTEEEEESCCHHHH
T ss_pred CEEEEEecccc--ccCHHHHHHHHHhCCCcEEEEE-ecCccH---------HHHHHHHHhhhcccCCcEEEeCCCCHHHH
Confidence 44556777653 34455666666665 4555444 432211 11111111 14568999999998
Q ss_pred hhhccccccceeEe---ecC-chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHH
Q 044441 235 AKILRHGRIGGFLS---HCG-WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKH 310 (333)
Q Consensus 235 ~~ll~~~~~~~~I~---hgG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~ 310 (333)
..+++.+++ +|. +.| ..+++||+++|+|+|+... ..+...+++.+.|+.+ . -+.+++.++|.+
T Consensus 92 ~~~~~~adi--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i~~~~~g~~~-~------~d~~~l~~~i~~ 158 (177)
T 2f9f_A 92 IDLYSRCKG--LLCTAKDEDFGLTPIEAMASGKPVIAVNE----GGFKETVINEKTGYLV-N------ADVNEIIDAMKK 158 (177)
T ss_dssp HHHHHHCSE--EEECCSSCCSCHHHHHHHHTTCCEEEESS----HHHHHHCCBTTTEEEE-C------SCHHHHHHHHHH
T ss_pred HHHHHhCCE--EEeCCCcCCCChHHHHHHHcCCcEEEeCC----CCHHHHhcCCCccEEe-C------CCHHHHHHHHHH
Confidence 367887777 665 233 4599999999999999754 3455556666678777 2 388999999999
Q ss_pred HhcCcchHHHHHHHHHHHH
Q 044441 311 VLLQEEGKQIRRKAKEMSE 329 (333)
Q Consensus 311 vl~~~~~~~~~~~a~~l~~ 329 (333)
++++. +.+++++++.++
T Consensus 159 l~~~~--~~~~~~~~~~a~ 175 (177)
T 2f9f_A 159 VSKNP--DKFKKDCFRRAK 175 (177)
T ss_dssp HHHCT--TTTHHHHHHHHH
T ss_pred HHhCH--HHHHHHHHHHHh
Confidence 99842 123555555444
No 40
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=98.21 E-value=9e-06 Score=73.40 Aligned_cols=125 Identities=14% Similarity=0.071 Sum_probs=79.9
Q ss_pred EEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch---hhccc
Q 044441 164 VFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA---KILRH 240 (333)
Q Consensus 164 v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~---~ll~~ 240 (333)
+++..|+... .+....+++++...+..+++ ++..... +. + +.+.++. .+++.+.+|+++. .++..
T Consensus 164 ~i~~vG~~~~--~Kg~~~li~a~~~~~~~l~i-~G~g~~~--~~---l-~~~~~~~---~~~v~~~g~~~~~~l~~~~~~ 231 (342)
T 2iuy_A 164 FLLFMGRVSP--HKGALEAAAFAHACGRRLVL-AGPAWEP--EY---F-DEITRRY---GSTVEPIGEVGGERRLDLLAS 231 (342)
T ss_dssp CEEEESCCCG--GGTHHHHHHHHHHHTCCEEE-ESCCCCH--HH---H-HHHHHHH---TTTEEECCCCCHHHHHHHHHH
T ss_pred EEEEEecccc--ccCHHHHHHHHHhcCcEEEE-EeCcccH--HH---H-HHHHHHh---CCCEEEeccCCHHHHHHHHHh
Confidence 3455677652 34455566666555666544 4432211 00 0 1122222 3799999999976 67887
Q ss_pred cccceeEe--e------------cCchhHHHHHHhCcceeccccccchhhHHHHHhH--hCeeeEeecCccCCCcCHHHH
Q 044441 241 GRIGGFLS--H------------CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVD--IGMGMDVPRDKINQRLRREEV 304 (333)
Q Consensus 241 ~~~~~~I~--h------------gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~--~G~g~~l~~~~~~~~~~~~~l 304 (333)
+++ +|. + |-.++++||+++|+|+|+.... .+...+++ -+.|+.++ . +.+++
T Consensus 232 adv--~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~----~~~e~~~~~~~~~g~~~~------~-d~~~l 298 (342)
T 2iuy_A 232 AHA--VLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNG----CLAEIVPSVGEVVGYGTD------F-APDEA 298 (342)
T ss_dssp CSE--EEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTT----THHHHGGGGEEECCSSSC------C-CHHHH
T ss_pred CCE--EEECCcccccccccccccCccHHHHHHHhcCCCEEEcCCC----ChHHHhcccCCCceEEcC------C-CHHHH
Confidence 777 663 2 2246899999999999998753 35556666 45777773 3 89999
Q ss_pred HHHHHHHhc
Q 044441 305 ARVIKHVLL 313 (333)
Q Consensus 305 ~~ai~~vl~ 313 (333)
.++|.++++
T Consensus 299 ~~~i~~l~~ 307 (342)
T 2iuy_A 299 RRTLAGLPA 307 (342)
T ss_dssp HHHHHTSCC
T ss_pred HHHHHHHHH
Confidence 999999886
No 41
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=98.10 E-value=3.4e-05 Score=70.18 Aligned_cols=157 Identities=13% Similarity=0.192 Sum_probs=98.2
Q ss_pred HHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCC----c-EEEEEecCCCcchhhhhcCchhHHHHHHh--c
Q 044441 150 KIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEV----S-FIRVLRLHPDEKITIEEALPQGFAEEIER--N 222 (333)
Q Consensus 150 ~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~----~-~i~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 222 (333)
.+.+.++..++ ..+++..|+... .+.+..+++++..... + -++.++.... +.+.+..+. .
T Consensus 185 ~~~~~~~~~~~-~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~~----------~~~~~~~~~~~~ 251 (374)
T 2iw1_A 185 IYRQKNGIKEQ-QNLLLQVGSDFG--RKGVDRSIEALASLPESLRHNTLLFVVGQDKP----------RKFEALAEKLGV 251 (374)
T ss_dssp HHHHHTTCCTT-CEEEEEECSCTT--TTTHHHHHHHHHTSCHHHHHTEEEEEESSSCC----------HHHHHHHHHHTC
T ss_pred HHHHHhCCCCC-CeEEEEeccchh--hcCHHHHHHHHHHhHhccCCceEEEEEcCCCH----------HHHHHHHHHcCC
Confidence 34444443333 366777787653 2344555666655422 2 2445554321 112111111 2
Q ss_pred CCCeEEeccccch-hhccccccceeEe----ecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCC
Q 044441 223 NKGMLVQGWVPQA-KILRHGRIGGFLS----HCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQ 297 (333)
Q Consensus 223 ~~~~~~~~~~p~~-~ll~~~~~~~~I~----hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~ 297 (333)
.+++.+.++..+. .++..+++ +|. -|..++++||+++|+|+|+.... .+...+++.+.|+.+. +
T Consensus 252 ~~~v~~~g~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~~~g~~~~-----~ 320 (374)
T 2iw1_A 252 RSNVHFFSGRNDVSELMAAADL--LLHPAYQEAAGIVLLEAITAGLPVLTTAVC----GYAHYIADANCGTVIA-----E 320 (374)
T ss_dssp GGGEEEESCCSCHHHHHHHCSE--EEECCSCCSSCHHHHHHHHHTCCEEEETTS----TTTHHHHHHTCEEEEC-----S
T ss_pred CCcEEECCCcccHHHHHHhcCE--EEeccccCCcccHHHHHHHCCCCEEEecCC----CchhhhccCCceEEeC-----C
Confidence 4688888886553 68887777 775 45678999999999999997653 4566778888999994 2
Q ss_pred CcCHHHHHHHHHHHhcC-cchHHHHHHHHHHHHH
Q 044441 298 RLRREEVARVIKHVLLQ-EEGKQIRRKAKEMSER 330 (333)
Q Consensus 298 ~~~~~~l~~ai~~vl~~-~~~~~~~~~a~~l~~~ 330 (333)
.-+.+++.++|.+++++ +..+.+.+++++..+.
T Consensus 321 ~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~ 354 (374)
T 2iw1_A 321 PFSQEQLNEVLRKALTQSPLRMAWAENARHYADT 354 (374)
T ss_dssp SCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 35899999999999984 2234566666665543
No 42
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=98.05 E-value=0.00087 Score=63.31 Aligned_cols=143 Identities=10% Similarity=0.094 Sum_probs=81.7
Q ss_pred HHHHhhcCCCCCeEEEEEecCccc-CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeE-
Q 044441 150 KIMDWLSQKEPWSVVFVSFGSEYF-LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGML- 227 (333)
Q Consensus 150 ~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~- 227 (333)
.+.+-++..++...+++..|.... -..+.+...+..+.+.+..+++ ++..... +-+.+.+..++...++.
T Consensus 279 ~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~i-vG~g~~~-------~~~~l~~~~~~~~~~v~~ 350 (485)
T 1rzu_A 279 AVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVV-LGAGDVA-------LEGALLAAASRHHGRVGV 350 (485)
T ss_dssp HHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEE-EECBCHH-------HHHHHHHHHHHTTTTEEE
T ss_pred HHHHhcCCCCCCCeEEEEEccCccccCHHHHHHHHHHHHhcCceEEE-EeCCchH-------HHHHHHHHHHhCCCcEEE
Confidence 344444433321246777888764 2334444444444434555444 4432100 00112222211346786
Q ss_pred Eeccccch--hhccccccceeEee----cCchhHHHHHHhCcceeccccccchhhHHHHHhHh---------CeeeEeec
Q 044441 228 VQGWVPQA--KILRHGRIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDI---------GMGMDVPR 292 (333)
Q Consensus 228 ~~~~~p~~--~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~---------G~g~~l~~ 292 (333)
+.++.... .+++.+++ +|.- |-..+++||+++|+|+|+.... .....+.+. +.|+.+.
T Consensus 351 ~~g~~~~~~~~~~~~adv--~v~pS~~E~~~~~~lEAma~G~PvI~s~~g----g~~e~v~~~~~~~~~~~~~~G~l~~- 423 (485)
T 1rzu_A 351 AIGYNEPLSHLMQAGCDA--IIIPSRFEPCGLTQLYALRYGCIPVVARTG----GLADTVIDANHAALASKAATGVQFS- 423 (485)
T ss_dssp EESCCHHHHHHHHHHCSE--EEECCSCCSSCSHHHHHHHHTCEEEEESSH----HHHHHCCBCCHHHHHTTCCCBEEES-
T ss_pred ecCCCHHHHHHHHhcCCE--EEECcccCCCCHHHHHHHHCCCCEEEeCCC----ChhheecccccccccccCCcceEeC-
Confidence 67773332 57787776 7643 3357899999999999997653 344444443 6888885
Q ss_pred CccCCCcCHHHHHHHHHHHh
Q 044441 293 DKINQRLRREEVARVIKHVL 312 (333)
Q Consensus 293 ~~~~~~~~~~~l~~ai~~vl 312 (333)
.-+.+++.++|.+++
T Consensus 424 -----~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 424 -----PVTLDGLKQAIRRTV 438 (485)
T ss_dssp -----SCSHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHH
Confidence 247899999999999
No 43
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=98.05 E-value=3.4e-05 Score=61.83 Aligned_cols=143 Identities=13% Similarity=0.169 Sum_probs=80.3
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCC--CcE-EEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch---
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSE--VSF-IRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA--- 235 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~--~~~-i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~--- 235 (333)
+++++..|+... .+.+..+++++.... .++ ++.++..... +.+.+..++...++.+ +|+|+.
T Consensus 2 ~~~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~---------~~~~~~~~~~~~~v~~-g~~~~~~~~ 69 (166)
T 3qhp_A 2 PFKIAMVGRYSN--EKNQSVLIKAVALSKYKQDIVLLLKGKGPDE---------KKIKLLAQKLGVKAEF-GFVNSNELL 69 (166)
T ss_dssp CEEEEEESCCST--TTTHHHHHHHHHTCTTGGGEEEEEECCSTTH---------HHHHHHHHHHTCEEEC-CCCCHHHHH
T ss_pred ceEEEEEeccch--hcCHHHHHHHHHHhccCCCeEEEEEeCCccH---------HHHHHHHHHcCCeEEE-eecCHHHHH
Confidence 467778888753 334555556655442 233 3334432111 1222222112337778 898864
Q ss_pred hhccccccceeEe----ecCchhHHHHHHhCc-ceeccc-cccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHH
Q 044441 236 KILRHGRIGGFLS----HCGWGSAVEGMVFGV-PIIAMP-MVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIK 309 (333)
Q Consensus 236 ~ll~~~~~~~~I~----hgG~~s~~eal~~Gv-P~i~~P-~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~ 309 (333)
.++..+++ +|. -|...+++||+++|+ |+|+.. ..+ ....+.+.+. .+. .-+.+++.++|.
T Consensus 70 ~~~~~adv--~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~----~~~~~~~~~~--~~~------~~~~~~l~~~i~ 135 (166)
T 3qhp_A 70 EILKTCTL--YVHAANVESEAIACLEAISVGIVPVIANSPLSA----TRQFALDERS--LFE------PNNAKDLSAKID 135 (166)
T ss_dssp HHHTTCSE--EEECCCSCCCCHHHHHHHHTTCCEEEECCTTCG----GGGGCSSGGG--EEC------TTCHHHHHHHHH
T ss_pred HHHHhCCE--EEECCcccCccHHHHHHHhcCCCcEEeeCCCCc----hhhhccCCce--EEc------CCCHHHHHHHHH
Confidence 57777776 765 234579999999996 999943 221 1111111222 332 248999999999
Q ss_pred HHhcC-cchHHHHHHHHHHHHH
Q 044441 310 HVLLQ-EEGKQIRRKAKEMSER 330 (333)
Q Consensus 310 ~vl~~-~~~~~~~~~a~~l~~~ 330 (333)
+++++ +..+.+.+++++..+.
T Consensus 136 ~l~~~~~~~~~~~~~~~~~~~~ 157 (166)
T 3qhp_A 136 WWLENKLERERMQNEYAKSALN 157 (166)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHH
Confidence 99984 2234566666665543
No 44
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=98.03 E-value=0.00072 Score=62.34 Aligned_cols=89 Identities=11% Similarity=0.173 Sum_probs=56.7
Q ss_pred eEEeccccch---hhccccccceeEee----cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCe------------
Q 044441 226 MLVQGWVPQA---KILRHGRIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGM------------ 286 (333)
Q Consensus 226 ~~~~~~~p~~---~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~------------ 286 (333)
+.+.+|+++. .+++.+++ +|.- |...+++||+++|+|+|+.... .....+.+...
T Consensus 256 v~~~g~~~~~~~~~~~~~adv--~v~pS~~E~~~~~~lEAma~G~PvI~s~~~----g~~e~v~~~~~~~i~~~~~~~~~ 329 (413)
T 3oy2_A 256 MINRTVLTDERVDMMYNACDV--IVNCSSGEGFGLCSAEGAVLGKPLIISAVG----GADDYFSGDCVYKIKPSAWISVD 329 (413)
T ss_dssp EEECSCCCHHHHHHHHHHCSE--EEECCSCCSSCHHHHHHHTTTCCEEEECCH----HHHHHSCTTTSEEECCCEEEECT
T ss_pred eeccCcCCHHHHHHHHHhCCE--EEeCCCcCCCCcHHHHHHHcCCCEEEcCCC----ChHHHHccCcccccccccccccc
Confidence 7777899854 57777776 6642 3346899999999999997543 23333333221
Q ss_pred ---ee--EeecCccCCCcCHHHHHHHHHHHhcCc-chHHHHHHHHHH
Q 044441 287 ---GM--DVPRDKINQRLRREEVARVIKHVLLQE-EGKQIRRKAKEM 327 (333)
Q Consensus 287 ---g~--~l~~~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~~~a~~l 327 (333)
|+ .+.. -+.+++.++| +++++. ....+.+++++.
T Consensus 330 ~~~G~~gl~~~------~d~~~la~~i-~l~~~~~~~~~~~~~a~~~ 369 (413)
T 3oy2_A 330 DRDGIGGIEGI------IDVDDLVEAF-TFFKDEKNRKEYGKRVQDF 369 (413)
T ss_dssp TTCSSCCEEEE------CCHHHHHHHH-HHTTSHHHHHHHHHHHHHH
T ss_pred cccCcceeeCC------CCHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Confidence 44 5531 3899999999 999841 123344444443
No 45
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=98.01 E-value=0.00094 Score=63.06 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=75.8
Q ss_pred EEEEEecCccc-CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeE-Eeccccch--hhc
Q 044441 163 VVFVSFGSEYF-LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGML-VQGWVPQA--KIL 238 (333)
Q Consensus 163 ~v~vs~Gs~~~-~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~p~~--~ll 238 (333)
.+++..|.... -..+.+.+.+..+.+.+..+++. +..... +-+.+.+..++...++. +.++.... .++
T Consensus 293 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~iv-G~g~~~-------~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~ 364 (485)
T 2qzs_A 293 PLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALL-GAGDPV-------LQEGFLAAAAEYPGQVGVQIGYHEAFSHRIM 364 (485)
T ss_dssp CEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEE-EEECHH-------HHHHHHHHHHHSTTTEEEEESCCHHHHHHHH
T ss_pred eEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEE-eCCchH-------HHHHHHHHHHhCCCcEEEeCCCCHHHHHHHH
Confidence 55666677653 23344444444444345555444 432100 00122222212345775 67774332 577
Q ss_pred cccccceeEee----cCchhHHHHHHhCcceeccccccchhhHHHHHhHh---------CeeeEeecCccCCCcCHHHHH
Q 044441 239 RHGRIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDI---------GMGMDVPRDKINQRLRREEVA 305 (333)
Q Consensus 239 ~~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~---------G~g~~l~~~~~~~~~~~~~l~ 305 (333)
+.+++ +|.- |-..+++||+++|+|+|+.... .....+.+. +.|+.+. .-+.++++
T Consensus 365 ~~adv--~v~pS~~E~~g~~~lEAma~G~PvI~s~~g----g~~e~v~~~~~~~~~~~~~~G~l~~------~~d~~~la 432 (485)
T 2qzs_A 365 GGADV--ILVPSRFEPCGLTQLYGLKYGTLPLVRRTG----GLADTVSDCSLENLADGVASGFVFE------DSNAWSLL 432 (485)
T ss_dssp HHCSE--EEECCSCCSSCSHHHHHHHHTCEEEEESSH----HHHHHCCBCCHHHHHTTCCCBEEEC------SSSHHHHH
T ss_pred HhCCE--EEECCccCCCcHHHHHHHHCCCCEEECCCC----CccceeccCccccccccccceEEEC------CCCHHHHH
Confidence 87776 7643 3356899999999999998543 344444443 6888885 24789999
Q ss_pred HHHHHHh
Q 044441 306 RVIKHVL 312 (333)
Q Consensus 306 ~ai~~vl 312 (333)
++|.+++
T Consensus 433 ~~i~~ll 439 (485)
T 2qzs_A 433 RAIRRAF 439 (485)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999999
No 46
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=97.89 E-value=0.00034 Score=57.66 Aligned_cols=93 Identities=16% Similarity=0.112 Sum_probs=66.8
Q ss_pred CeEE-eccccch---hhccccccceeEeec----CchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccC
Q 044441 225 GMLV-QGWVPQA---KILRHGRIGGFLSHC----GWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKIN 296 (333)
Q Consensus 225 ~~~~-~~~~p~~---~ll~~~~~~~~I~hg----G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~ 296 (333)
++.+ .+++++. .++..+++ +|... ...+++||+++|+|+|+.... .....+ +.+.|+.+.
T Consensus 96 ~v~~~~g~~~~~~~~~~~~~ad~--~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~e~~-~~~~g~~~~----- 163 (200)
T 2bfw_A 96 NVKVITEMLSREFVRELYGSVDF--VIIPSYFEPFGLVALEAMCLGAIPIASAVG----GLRDII-TNETGILVK----- 163 (200)
T ss_dssp TEEEECSCCCHHHHHHHHTTCSE--EEECCSCCSSCHHHHHHHHTTCEEEEESCH----HHHHHC-CTTTCEEEC-----
T ss_pred CEEEEeccCCHHHHHHHHHHCCE--EEECCCCCCccHHHHHHHHCCCCEEEeCCC----ChHHHc-CCCceEEec-----
Confidence 8998 9999853 67887777 66433 246899999999999987543 344445 556788885
Q ss_pred CCcCHHHHHHHHHHHhc-C-cchHHHHHHHHHHHHH
Q 044441 297 QRLRREEVARVIKHVLL-Q-EEGKQIRRKAKEMSER 330 (333)
Q Consensus 297 ~~~~~~~l~~ai~~vl~-~-~~~~~~~~~a~~l~~~ 330 (333)
.-+.+++.++|.++++ + +.-..+.+++++..+.
T Consensus 164 -~~~~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~ 198 (200)
T 2bfw_A 164 -AGDPGELANAILKALELSRSDLSKFRENCKKRAMS 198 (200)
T ss_dssp -TTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 2378999999999997 6 2234566666665543
No 47
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=97.77 E-value=0.00098 Score=67.17 Aligned_cols=94 Identities=15% Similarity=0.159 Sum_probs=60.6
Q ss_pred CCCeEEeccc----cchhhcc----ccccceeEee----cCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEe
Q 044441 223 NKGMLVQGWV----PQAKILR----HGRIGGFLSH----CGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDV 290 (333)
Q Consensus 223 ~~~~~~~~~~----p~~~ll~----~~~~~~~I~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l 290 (333)
.+++.+.++. +..++.. .+++ ||.- |-..+++||+++|+|+|+... ......+.+.+.|+.+
T Consensus 639 ~~~V~flG~~~~~v~~~eL~~~~~~aaDv--fV~PS~~EgfglvllEAMA~G~PVIasd~----GG~~EiV~dg~~Gllv 712 (816)
T 3s28_A 639 NGQFRWISSQMDRVRNGELYRYICDTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCK----GGPAEIIVHGKSGFHI 712 (816)
T ss_dssp BBBEEEECCCCCHHHHHHHHHHHHHTTCE--EEECCSCBSSCHHHHHHHHTTCCEEEESS----BTHHHHCCBTTTBEEE
T ss_pred CCcEEEccCccccCCHHHHHHHHHhcCeE--EEECCCccCccHHHHHHHHcCCCEEEeCC----CChHHHHccCCcEEEe
Confidence 4678887744 4444433 3344 7743 335799999999999999643 3345555556688888
Q ss_pred ecCccCCCcCHHHHHHHHHHHh----cC-cchHHHHHHHHHHH
Q 044441 291 PRDKINQRLRREEVARVIKHVL----LQ-EEGKQIRRKAKEMS 328 (333)
Q Consensus 291 ~~~~~~~~~~~~~l~~ai~~vl----~~-~~~~~~~~~a~~l~ 328 (333)
+. -+.++++++|.+++ .+ +....+.+++++..
T Consensus 713 ~p------~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a 749 (816)
T 3s28_A 713 DP------YHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRI 749 (816)
T ss_dssp CT------TSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred CC------CCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 52 47888999997776 54 22345555655544
No 48
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.61 E-value=0.00039 Score=69.46 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=86.0
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHh---cCCCeEEeccccchhh
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIER---NNKGMLVQGWVPQAKI 237 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~p~~~l 237 (333)
..++|.||.+..+..++.+..-.+-|++.+-.++|....+.... ..+.++.+. ..+.+++.+..|..+.
T Consensus 522 ~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~~--------~~l~~~~~~~gi~~~r~~f~~~~~~~~~ 593 (723)
T 4gyw_A 522 DAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE--------PNIQQYAQNMGLPQNRIIFSPVAPKEEH 593 (723)
T ss_dssp TSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGGH--------HHHHHHHHHTTCCGGGEEEEECCCHHHH
T ss_pred CCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHHH--------HHHHHHHHhcCCCcCeEEECCCCCHHHH
Confidence 34999999998899999999999999999999999987542111 111111111 3456888888887654
Q ss_pred cc-ccccceeEe---ecCchhHHHHHHhCcceeccccc-cchhhHHHHHhHhCeeeEee
Q 044441 238 LR-HGRIGGFLS---HCGWGSAVEGMVFGVPIIAMPMV-YEQSRNAKVVVDIGMGMDVP 291 (333)
Q Consensus 238 l~-~~~~~~~I~---hgG~~s~~eal~~GvP~i~~P~~-~DQ~~na~~~~~~G~g~~l~ 291 (333)
|. +..+++++. .+|++|++|||+.|||+|++|-. .=-..-+-.+...|+...+-
T Consensus 594 l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia 652 (723)
T 4gyw_A 594 VRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIA 652 (723)
T ss_dssp HHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBC
T ss_pred HHHhCCCeEEeCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCccccc
Confidence 33 334455865 88999999999999999999832 12223344566678887774
No 49
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=97.60 E-value=0.00098 Score=64.58 Aligned_cols=138 Identities=7% Similarity=-0.014 Sum_probs=88.9
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEE--ecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhc-
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVL--RLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKIL- 238 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll- 238 (333)
.++|.+|++..+..++.+.....-+.+.+..++|.. +...+.... +-..+.+.- ..+.+++.+.+|..+.+
T Consensus 441 ~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~----~~~~~~~~G--I~~Rv~F~g~~p~~e~la 514 (631)
T 3q3e_A 441 VVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHP----YVERFIKSY--LGDSATAHPHSPYHQYLR 514 (631)
T ss_dssp EEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGGGHH----HHHHHHHHH--HGGGEEEECCCCHHHHHH
T ss_pred eEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchhhHH----HHHHHHHcC--CCccEEEcCCCCHHHHHH
Confidence 599999999888889999998888888887777753 322111100 111111111 23577888888876544
Q ss_pred --cccccceeEe---ecCchhHHHHHHhCcceecccccc-chhhHHHHHhHhCeeeE-eecCccCCCcCHHHHHHHHHHH
Q 044441 239 --RHGRIGGFLS---HCGWGSAVEGMVFGVPIIAMPMVY-EQSRNAKVVVDIGMGMD-VPRDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 239 --~~~~~~~~I~---hgG~~s~~eal~~GvP~i~~P~~~-DQ~~na~~~~~~G~g~~-l~~~~~~~~~~~~~l~~ai~~v 311 (333)
..+|+ |+. .+|.+|++|||++|||+|+.+-.. --..-+-.+...|+... +. -+.++..+..-++
T Consensus 515 ~y~~aDI--fLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA-------~d~eeYv~~Av~L 585 (631)
T 3q3e_A 515 ILHNCDM--MVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIA-------NTVDEYVERAVRL 585 (631)
T ss_dssp HHHTCSE--EECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEE-------SSHHHHHHHHHHH
T ss_pred HHhcCcE--EEeCCcccCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceec-------CCHHHHHHHHHHH
Confidence 55554 754 378899999999999999997432 12223334566788762 43 2667766666677
Q ss_pred hcC
Q 044441 312 LLQ 314 (333)
Q Consensus 312 l~~ 314 (333)
.+|
T Consensus 586 a~D 588 (631)
T 3q3e_A 586 AEN 588 (631)
T ss_dssp HHC
T ss_pred hCC
Confidence 773
No 50
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.54 E-value=0.0019 Score=62.34 Aligned_cols=95 Identities=11% Similarity=0.163 Sum_probs=66.0
Q ss_pred CCeEEeccccch---hhccccccceeEe---ecCchhHHHHHHhCcceecccccc-chhhHHHHHhHhCeeeEeecCccC
Q 044441 224 KGMLVQGWVPQA---KILRHGRIGGFLS---HCGWGSAVEGMVFGVPIIAMPMVY-EQSRNAKVVVDIGMGMDVPRDKIN 296 (333)
Q Consensus 224 ~~~~~~~~~p~~---~ll~~~~~~~~I~---hgG~~s~~eal~~GvP~i~~P~~~-DQ~~na~~~~~~G~g~~l~~~~~~ 296 (333)
+++++.+++++. .++..+++ ||. .|+.++++||+++|+|+|++|-.. --...+..+...|+...+.
T Consensus 434 ~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~----- 506 (568)
T 2vsy_A 434 QRLVFMPKLPHPQYLARYRHADL--FLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNV----- 506 (568)
T ss_dssp GGEEEECCCCHHHHHHHGGGCSE--EECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBC-----
T ss_pred hHEEeeCCCCHHHHHHHHhcCCE--EeeCCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhc-----
Confidence 679999999853 56777776 762 266789999999999999986431 1112245566678887774
Q ss_pred CCcCHHHHHHHHHHHhcCc-chHHHHHHHHHH
Q 044441 297 QRLRREEVARVIKHVLLQE-EGKQIRRKAKEM 327 (333)
Q Consensus 297 ~~~~~~~l~~ai~~vl~~~-~~~~~~~~a~~l 327 (333)
+ +.+++.++|.+++++. ..+.+++++++.
T Consensus 507 ~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~ 536 (568)
T 2vsy_A 507 A--DDAAFVAKAVALASDPAALTALHARVDVL 536 (568)
T ss_dssp S--SHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2 8899999999999841 123445554443
No 51
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=97.50 E-value=0.0076 Score=55.71 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=56.1
Q ss_pred CCCeEEeccccch---hhccccccceeEe---ecC-chhHHHHH-------HhCcceeccccccchhhHHHHHhHhCeee
Q 044441 223 NKGMLVQGWVPQA---KILRHGRIGGFLS---HCG-WGSAVEGM-------VFGVPIIAMPMVYEQSRNAKVVVDIGMGM 288 (333)
Q Consensus 223 ~~~~~~~~~~p~~---~ll~~~~~~~~I~---hgG-~~s~~eal-------~~GvP~i~~P~~~DQ~~na~~~~~~G~g~ 288 (333)
.+++.+.+++|+. .+++.+++ +|. +-| .++++||+ ++|+|+|+... +.+...|.
T Consensus 264 ~~~V~f~G~~~~~~l~~~~~~adv--~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~----------v~~~~~G~ 331 (406)
T 2hy7_A 264 GDNVIVYGEMKHAQTIGYIKHARF--GIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA----------VVGPYKSR 331 (406)
T ss_dssp CTTEEEECCCCHHHHHHHHHTCSE--EECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG----------GTCSCSSE
T ss_pred CCCEEEcCCCCHHHHHHHHHhcCE--EEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh----------cccCcceE
Confidence 5689999999864 56777777 664 223 46789999 99999999754 44445687
Q ss_pred E-eecCccCCCcCHHHHHHHHHHHhcC
Q 044441 289 D-VPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 289 ~-l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
. +.. -+.+++.++|.+++++
T Consensus 332 l~v~~------~d~~~la~ai~~ll~~ 352 (406)
T 2hy7_A 332 FGYTP------GNADSVIAAITQALEA 352 (406)
T ss_dssp EEECT------TCHHHHHHHHHHHHHC
T ss_pred EEeCC------CCHHHHHHHHHHHHhC
Confidence 7 642 3789999999999974
No 52
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=97.12 E-value=0.00063 Score=61.59 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=70.9
Q ss_pred CeEEeccccchhh---ccccccceeEeecCc---------hhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeec
Q 044441 225 GMLVQGWVPQAKI---LRHGRIGGFLSHCGW---------GSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPR 292 (333)
Q Consensus 225 ~~~~~~~~p~~~l---l~~~~~~~~I~hgG~---------~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~ 292 (333)
|+.+.+|+|..++ ++.++.+++.+-+.. +-+.|+|++|+|+|+.+ ...++..+++.|.|+.++
T Consensus 215 nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~----~~~~~~~v~~~~~G~~~~- 289 (339)
T 3rhz_A 215 NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQE----GIANQELIENNGLGWIVK- 289 (339)
T ss_dssp TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEET----TCTTTHHHHHHTCEEEES-
T ss_pred CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEcc----ChhHHHHHHhCCeEEEeC-
Confidence 8999999999754 444455444433322 34789999999999854 457888899999999994
Q ss_pred CccCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 293 DKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 293 ~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
+.+++.+++..+.. ++-+.+++|+++.++.++
T Consensus 290 -------~~~e~~~~i~~l~~-~~~~~m~~na~~~a~~~~ 321 (339)
T 3rhz_A 290 -------DVEEAIMKVKNVNE-DEYIELVKNVRSFNPILR 321 (339)
T ss_dssp -------SHHHHHHHHHHCCH-HHHHHHHHHHHHHTHHHH
T ss_pred -------CHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhh
Confidence 57888888887653 234678999998887765
No 53
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=95.65 E-value=0.028 Score=52.09 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=55.1
Q ss_pred CCCeEEeccccch---hhccccccceeEeec---C-chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCcc
Q 044441 223 NKGMLVQGWVPQA---KILRHGRIGGFLSHC---G-WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKI 295 (333)
Q Consensus 223 ~~~~~~~~~~p~~---~ll~~~~~~~~I~hg---G-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~ 295 (333)
..++.+.+++|+. .+++.+++ ||.-. | ..+++||+++|+|+|+- ..+ ....+++-..|+.+..
T Consensus 294 ~~~v~f~G~~~~~~l~~~~~~adv--~v~pS~~E~~g~~~lEAmA~G~PVV~~-~~g----~~e~v~~~~~G~lv~~--- 363 (413)
T 2x0d_A 294 GIHLNSLGKLTLEDYADLLKRSSI--GISLMISPHPSYPPLEMAHFGLRVITN-KYE----NKDLSNWHSNIVSLEQ--- 363 (413)
T ss_dssp TEEEEEEESCCHHHHHHHHHHCCE--EECCCSSSSCCSHHHHHHHTTCEEEEE-CBT----TBCGGGTBTTEEEESS---
T ss_pred cCcEEEcCCCCHHHHHHHHHhCCE--EEEecCCCCCCcHHHHHHhCCCcEEEe-CCC----cchhhhcCCCEEEeCC---
Confidence 3478888999875 56776666 76432 3 35789999999999983 222 1233344457887752
Q ss_pred CCCcCHHHHHHHHHHHhc
Q 044441 296 NQRLRREEVARVIKHVLL 313 (333)
Q Consensus 296 ~~~~~~~~l~~ai~~vl~ 313 (333)
-++++++++|.++++
T Consensus 364 ---~d~~~la~ai~~ll~ 378 (413)
T 2x0d_A 364 ---LNPENIAETLVELCM 378 (413)
T ss_dssp ---CSHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHc
Confidence 488999999999998
No 54
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=93.53 E-value=0.54 Score=44.96 Aligned_cols=137 Identities=12% Similarity=0.070 Sum_probs=74.7
Q ss_pred EEEEEecCccc-CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccch---hhc
Q 044441 163 VVFVSFGSEYF-LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQA---KIL 238 (333)
Q Consensus 163 ~v~vs~Gs~~~-~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~---~ll 238 (333)
.+++..|.... -..+.+.+.+..+.+.+.++++...+. .... ..+.......+.++.+....+.. .++
T Consensus 328 p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~-~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 399 (536)
T 3vue_A 328 PLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGK-KKFE-------KLLKSMEEKYPGKVRAVVKFNAPLAHLIM 399 (536)
T ss_dssp CEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBC-HHHH-------HHHHHHHHHSTTTEEEECSCCHHHHHHHH
T ss_pred cEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccC-chHH-------HHHHHHHhhcCCceEEEEeccHHHHHHHH
Confidence 45566677653 234444444444545566665543321 1100 11111111145677777766654 466
Q ss_pred cccccceeEeec---C-chhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCcc----CCCcCHHHHHHHHHH
Q 044441 239 RHGRIGGFLSHC---G-WGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKI----NQRLRREEVARVIKH 310 (333)
Q Consensus 239 ~~~~~~~~I~hg---G-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~----~~~~~~~~l~~ai~~ 310 (333)
+.+++ ||.-. | ..+++||+++|+|+|+.... -....+.+-..|........ -+..+++++.++|++
T Consensus 400 ~~aD~--~v~PS~~E~fgl~~lEAma~G~PvI~s~~g----G~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~r 473 (536)
T 3vue_A 400 AGADV--LAVPSRFEPCGLIQLQGMRYGTPCACASTG----GLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKR 473 (536)
T ss_dssp HHCSE--EEECCSCCSSCSHHHHHHHTTCCEEECSCT----HHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHH
T ss_pred Hhhhe--eecccccCCCCHHHHHHHHcCCCEEEcCCC----CchheeeCCCCccccccCCCceeEECCCCHHHHHHHHHH
Confidence 66666 77542 2 35899999999999987543 33444444445554432110 012356789999988
Q ss_pred Hhc
Q 044441 311 VLL 313 (333)
Q Consensus 311 vl~ 313 (333)
++.
T Consensus 474 al~ 476 (536)
T 3vue_A 474 AIK 476 (536)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 55
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=90.96 E-value=3.8 Score=32.83 Aligned_cols=132 Identities=15% Similarity=0.073 Sum_probs=68.7
Q ss_pred hHHHHhhcCCCCCeEEEEEecC-cccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeE
Q 044441 149 TKIMDWLSQKEPWSVVFVSFGS-EYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGML 227 (333)
Q Consensus 149 ~~l~~~l~~~~~~~~v~vs~Gs-~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 227 (333)
.++-.+|.... ..+||.|. .+ ......++..+.+-.++-++.... ...+.. .-...+
T Consensus 35 ~~lg~~La~~g---~~lVsGGg~~G-----im~aa~~gAl~~gG~tigVlP~~~-------~~~~~~-------~~~~~i 92 (176)
T 2iz6_A 35 NELGKQIATHG---WILLTGGRSLG-----VMHEAMKGAKEAGGTTIGVLPGPD-------TSEISD-------AVDIPI 92 (176)
T ss_dssp HHHHHHHHHTT---CEEEEECSSSS-----HHHHHHHHHHHTTCCEEEEECC------------CCT-------TCSEEE
T ss_pred HHHHHHHHHCC---CEEEECCCccC-----HhHHHHHHHHHcCCEEEEEeCchh-------hhhhcc-------CCceeE
Confidence 34555665542 66677776 44 555566665555555555543210 001110 111234
Q ss_pred Eeccccch-hhc-cccccceeEeecCchhHHHH---HHhCcceeccccccchhhHHHHHhHhCe-eeEeecCccCCCcCH
Q 044441 228 VQGWVPQA-KIL-RHGRIGGFLSHCGWGSAVEG---MVFGVPIIAMPMVYEQSRNAKVVVDIGM-GMDVPRDKINQRLRR 301 (333)
Q Consensus 228 ~~~~~p~~-~ll-~~~~~~~~I~hgG~~s~~ea---l~~GvP~i~~P~~~DQ~~na~~~~~~G~-g~~l~~~~~~~~~~~ 301 (333)
+..+.+.. .++ ..++ ..++--||.||+.|+ +.+++|++.+|.+. .....+.+.-. .+.+. -++
T Consensus 93 ~~~~~~~Rk~~m~~~sd-a~IvlpGg~GTL~E~~~al~~~kpV~~l~~~~---~~~gfi~~~~~~~i~~~-------~~~ 161 (176)
T 2iz6_A 93 VTGLGSARDNINALSSN-VLVAVGMGPGTAAEVALALKAKKPVVLLGTQP---EAEKFFTSLDAGLVHVA-------ADV 161 (176)
T ss_dssp ECCCCSSSCCCCGGGCS-EEEEESCCHHHHHHHHHHHHTTCCEEEESCCH---HHHHHHHHHCTTTEEEE-------SSH
T ss_pred EcCCHHHHHHHHHHhCC-EEEEecCCccHHHHHHHHHHhCCcEEEEcCcc---cccccCChhhcCeEEEc-------CCH
Confidence 44555654 333 3444 456667888887665 67999999999843 11222322211 22221 267
Q ss_pred HHHHHHHHHHhc
Q 044441 302 EEVARVIKHVLL 313 (333)
Q Consensus 302 ~~l~~ai~~vl~ 313 (333)
+++.+.+++.+.
T Consensus 162 ~e~~~~l~~~~~ 173 (176)
T 2iz6_A 162 AGAIAAVKQLLA 173 (176)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766553
No 56
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=87.88 E-value=2.7 Score=37.08 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=58.0
Q ss_pred CCeEEEEEecC-c-c--cCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhc-C----CCeE-Ee
Q 044441 160 PWSVVFVSFGS-E-Y--FLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERN-N----KGML-VQ 229 (333)
Q Consensus 160 ~~~~v~vs~Gs-~-~--~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~----~~~~-~~ 229 (333)
.++.|.+..|+ . . ..+.+.+.++++.|.+.+.++++. +.+. + . ...+++.+. + .+++ +.
T Consensus 179 ~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~-g~~~-e-~--------~~~~~i~~~~~~~~~~~~~~l~ 247 (348)
T 1psw_A 179 ERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLF-GSAK-D-H--------EAGNEILAALNTEQQAWCRNLA 247 (348)
T ss_dssp SSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEEC-CCGG-G-H--------HHHHHHHTTSCHHHHTTEEECT
T ss_pred CCcEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEE-eChh-h-H--------HHHHHHHHhhhhccccceEecc
Confidence 45688888888 3 2 266789999999987768877664 3221 1 1 111111001 0 1232 22
Q ss_pred ccc--cc-hhhccccccceeEeecCchhHHHHHHhCcceecc
Q 044441 230 GWV--PQ-AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAM 268 (333)
Q Consensus 230 ~~~--p~-~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~ 268 (333)
+.. .+ .++++++++ +|+.- .|+++-|.+.|+|+|++
T Consensus 248 g~~sl~e~~ali~~a~l--~I~~D-sg~~HlAaa~g~P~v~l 286 (348)
T 1psw_A 248 GETQLDQAVILIAACKA--IVTND-SGLMHVAAALNRPLVAL 286 (348)
T ss_dssp TTSCHHHHHHHHHTSSE--EEEES-SHHHHHHHHTTCCEEEE
T ss_pred CcCCHHHHHHHHHhCCE--EEecC-CHHHHHHHHcCCCEEEE
Confidence 222 12 378887777 99974 56677799999999987
No 57
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=87.50 E-value=1.2 Score=40.02 Aligned_cols=141 Identities=16% Similarity=0.117 Sum_probs=76.6
Q ss_pred CCeEEEEEecCccc---CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEecc--ccc
Q 044441 160 PWSVVFVSFGSEYF---LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGW--VPQ 234 (333)
Q Consensus 160 ~~~~v~vs~Gs~~~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~p~ 234 (333)
+++.|.+..|+... .+.+.+.++++.|.+.|.++++ ++.+.+. + +.+.+.+.+ ....+.+.+- +.+
T Consensus 184 ~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl-~g~~~e~--~----~~~~i~~~~--~~~~~~l~g~~sl~e 254 (349)
T 3tov_A 184 TDILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVF-FGGPMDL--E----MVQPVVEQM--ETKPIVATGKFQLGP 254 (349)
T ss_dssp TCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEE-CCCTTTH--H----HHHHHHHTC--SSCCEECTTCCCHHH
T ss_pred CCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEE-EeCcchH--H----HHHHHHHhc--ccccEEeeCCCCHHH
Confidence 45688898887532 6688999999998766888776 4433211 0 111111111 1112222221 122
Q ss_pred -hhhccccccceeEeecCchhHHHHHHhCcceecc--ccccchh-------------hHHHHHhHhCeeeEe-ecCccCC
Q 044441 235 -AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAM--PMVYEQS-------------RNAKVVVDIGMGMDV-PRDKINQ 297 (333)
Q Consensus 235 -~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~--P~~~DQ~-------------~na~~~~~~G~g~~l-~~~~~~~ 297 (333)
.++++++++ +|+.- .|.++=|.+.|+|+|++ |.....+ ..+. +...|--..- ....=-.
T Consensus 255 ~~ali~~a~~--~i~~D-sG~~HlAaa~g~P~v~lfg~t~p~~~~P~~~~~~vl~~~~~C~-C~~~~~~~C~~~~~~Cm~ 330 (349)
T 3tov_A 255 LAAAMNRCNL--LITND-SGPMHVGISQGVPIVALYGPSNPFFYGPYQAHAIVLETMDSYE-IGKSMKKIIKEGNYKGLS 330 (349)
T ss_dssp HHHHHHTCSE--EEEES-SHHHHHHHTTTCCEEEECSSCCHHHHSCTTCSEEEECHHHHHH-HHHHTTCCCCGGGCSTTT
T ss_pred HHHHHHhCCE--EEECC-CCHHHHHHhcCCCEEEEECCCCccccCCCCCCeEEEeCCCCcC-ccCCccCCCCCCccchhh
Confidence 368887777 99984 34555588899999987 3211111 1112 2221100000 0000014
Q ss_pred CcCHHHHHHHHHHHhc
Q 044441 298 RLRREEVARVIKHVLL 313 (333)
Q Consensus 298 ~~~~~~l~~ai~~vl~ 313 (333)
.+++++|.++++++|.
T Consensus 331 ~I~~~~V~~a~~~lL~ 346 (349)
T 3tov_A 331 VISEEQVIKAAETLLL 346 (349)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 5899999999999986
No 58
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=86.54 E-value=21 Score=33.48 Aligned_cols=92 Identities=15% Similarity=0.080 Sum_probs=57.1
Q ss_pred CeEEeccccch---hhccccccceeEe---ecCch-hHHHHHHhC---cceeccccccchhhHHHHHhHhCeeeEeecCc
Q 044441 225 GMLVQGWVPQA---KILRHGRIGGFLS---HCGWG-SAVEGMVFG---VPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDK 294 (333)
Q Consensus 225 ~~~~~~~~p~~---~ll~~~~~~~~I~---hgG~~-s~~eal~~G---vP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~ 294 (333)
.+++.+.+|+. .++..+++ ||. +=|+| +..|++++| .|+|+--+.+ .+..+. ..|+.+.+
T Consensus 353 ~V~f~g~v~~~el~aly~~ADv--~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aG----a~~~l~--~~allVnP-- 422 (496)
T 3t5t_A 353 TVRIDNDNDVNHTIACFRRADL--LIFNSTVDGQNLSTFEAPLVNERDADVILSETCG----AAEVLG--EYCRSVNP-- 422 (496)
T ss_dssp SEEEEECCCHHHHHHHHHHCSE--EEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBT----THHHHG--GGSEEECT--
T ss_pred CEEEeCCCCHHHHHHHHHhccE--EEECcccccCChhHHHHHHhCCCCCCEEEeCCCC----CHHHhC--CCEEEECC--
Confidence 57777777764 56666676 654 35776 568999996 5665544433 222221 14788853
Q ss_pred cCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHh
Q 044441 295 INQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSERM 331 (333)
Q Consensus 295 ~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~ 331 (333)
.+.++++++|.++|+.. .++-+++.+++.+.+
T Consensus 423 ----~D~~~lA~AI~~aL~m~-~~er~~r~~~~~~~V 454 (496)
T 3t5t_A 423 ----FDLVEQAEAISAALAAG-PRQRAEAAARRRDAA 454 (496)
T ss_dssp ----TBHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Confidence 58999999999999742 233444444544443
No 59
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=84.23 E-value=22 Score=33.24 Aligned_cols=72 Identities=18% Similarity=0.136 Sum_probs=48.8
Q ss_pred eE-Eeccccch---hhccccccceeEee---cCc-hhHHHHHHhCc-----ceecccccc--chhhHHHHHhHhCeeeEe
Q 044441 226 ML-VQGWVPQA---KILRHGRIGGFLSH---CGW-GSAVEGMVFGV-----PIIAMPMVY--EQSRNAKVVVDIGMGMDV 290 (333)
Q Consensus 226 ~~-~~~~~p~~---~ll~~~~~~~~I~h---gG~-~s~~eal~~Gv-----P~i~~P~~~--DQ~~na~~~~~~G~g~~l 290 (333)
++ +.+++++. .+++.+++ ||.- =|. .++.||+++|+ |+|+--+.+ ++. ..|+.+
T Consensus 333 v~~~~g~v~~~el~~ly~~ADv--~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l---------~~g~lv 401 (482)
T 1uqt_A 333 LYYLNQHFDRKLLMKIFRYSDV--GLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL---------TSALIV 401 (482)
T ss_dssp EEEECSCCCHHHHHHHHHHCSE--EEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTC---------TTSEEE
T ss_pred EEEeCCCCCHHHHHHHHHHccE--EEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHh---------CCeEEE
Confidence 44 35777765 46666666 7653 344 48999999998 676655433 332 146777
Q ss_pred ecCccCCCcCHHHHHHHHHHHhcC
Q 044441 291 PRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 291 ~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
.. .+.++++++|.++|++
T Consensus 402 ~p------~d~~~lA~ai~~lL~~ 419 (482)
T 1uqt_A 402 NP------YDRDEVAAALDRALTM 419 (482)
T ss_dssp CT------TCHHHHHHHHHHHHTC
T ss_pred CC------CCHHHHHHHHHHHHcC
Confidence 42 4789999999999974
No 60
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=83.88 E-value=2.5 Score=37.09 Aligned_cols=135 Identities=13% Similarity=0.022 Sum_probs=75.6
Q ss_pred CCeEEEEEecCccc---CCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEecc--ccc
Q 044441 160 PWSVVFVSFGSEYF---LSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGW--VPQ 234 (333)
Q Consensus 160 ~~~~v~vs~Gs~~~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~p~ 234 (333)
.++.|.+..|+... .+.+.+.++++.|.+.+.++++..+.+. + ....+++.+..+++.+.+- +.+
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~-e---------~~~~~~i~~~~~~~~l~g~~sl~e 246 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPH-E---------EERAKRLAEGFAYVEVLPKMSLEG 246 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHH-H---------HHHHHHHHTTCTTEEECCCCCHHH
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHH-H---------HHHHHHHHhhCCcccccCCCCHHH
Confidence 35688888887542 6788999999998776777665433211 0 0111111111223333221 222
Q ss_pred -hhhccccccceeEeecCchhHHHHHHhCcceecc--ccccchhhHHHHHhHhCe-eeEeecC-ccCCCcCHHHHHHHHH
Q 044441 235 -AKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAM--PMVYEQSRNAKVVVDIGM-GMDVPRD-KINQRLRREEVARVIK 309 (333)
Q Consensus 235 -~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~--P~~~DQ~~na~~~~~~G~-g~~l~~~-~~~~~~~~~~l~~ai~ 309 (333)
.++++++++ +|+.-. |+++=|.+.|+|+|++ |.....+ .-.|- ...+... .--..+++++|.++++
T Consensus 247 l~ali~~a~l--~I~~DS-G~~HlAaa~g~P~v~lfg~t~p~~~------~P~~~~~~~~~~~~~cm~~I~~~~V~~~i~ 317 (326)
T 2gt1_A 247 VARVLAGAKF--VVSVDT-GLSHLTAALDRPNITVYGPTDPGLI------GGYGKNQMVCRAPGNELSQLTANAVKQFIE 317 (326)
T ss_dssp HHHHHHTCSE--EEEESS-HHHHHHHHTTCCEEEEESSSCHHHH------CCCSSSEEEEECGGGCGGGCCHHHHHHHHH
T ss_pred HHHHHHhCCE--EEecCC-cHHHHHHHcCCCEEEEECCCChhhc------CCCCCCceEecCCcccccCCCHHHHHHHHH
Confidence 368887777 999843 3444466799999998 4322111 00111 1122110 0013689999999999
Q ss_pred HHhc
Q 044441 310 HVLL 313 (333)
Q Consensus 310 ~vl~ 313 (333)
++|+
T Consensus 318 ~~l~ 321 (326)
T 2gt1_A 318 ENAE 321 (326)
T ss_dssp HTTT
T ss_pred HHHH
Confidence 9997
No 61
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=82.93 E-value=1.2 Score=43.80 Aligned_cols=35 Identities=20% Similarity=0.125 Sum_probs=25.9
Q ss_pred hhccccccceeEeec----CchhHHHHHHhCcceecccccc
Q 044441 236 KILRHGRIGGFLSHC----GWGSAVEGMVFGVPIIAMPMVY 272 (333)
Q Consensus 236 ~ll~~~~~~~~I~hg----G~~s~~eal~~GvP~i~~P~~~ 272 (333)
++++.+++ ||.-. -..+++||+++|+|+|+.-..+
T Consensus 514 ~~~~~adv--fV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG 552 (725)
T 3nb0_A 514 EFVRGCHL--GVFPSYYEPWGYTPAECTVMGVPSITTNVSG 552 (725)
T ss_dssp HHHHHCSE--EECCCSSBSSCHHHHHHHHTTCCEEEETTBH
T ss_pred HHHhhceE--EEeccccCCCCHHHHHHHHcCCCEEEeCCCC
Confidence 46776666 77543 3468999999999999976543
No 62
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=76.21 E-value=26 Score=27.51 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=73.7
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhcccc
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHG 241 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~ 241 (333)
|.|-|-+||.. +....+++...|+..|..+-..+... +..|+.+.+ |+... ...
T Consensus 6 p~V~IimgS~S--D~~v~~~a~~~l~~~gi~~ev~V~Sa--------HRtp~~l~~-------------~~~~~---~~~ 59 (166)
T 3oow_A 6 VQVGVIMGSKS--DWSTMKECCDILDNLGIGYECEVVSA--------HRTPDKMFD-------------YAETA---KER 59 (166)
T ss_dssp EEEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEECCT--------TTCHHHHHH-------------HHHHT---TTT
T ss_pred CeEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEEcC--------cCCHHHHHH-------------HHHHH---HhC
Confidence 46777777765 56788889899998888654444322 234443322 22211 111
Q ss_pred ccceeEeecCchhHHHHH---HhCcceeccccccc---hhhHHHHHhHh--CeeeEeecCccCC---CcCHHHHHHHHHH
Q 044441 242 RIGGFLSHCGWGSAVEGM---VFGVPIIAMPMVYE---QSRNAKVVVDI--GMGMDVPRDKINQ---RLRREEVARVIKH 310 (333)
Q Consensus 242 ~~~~~I~hgG~~s~~eal---~~GvP~i~~P~~~D---Q~~na~~~~~~--G~g~~l~~~~~~~---~~~~~~l~~ai~~ 310 (333)
.+++||.-+|.-.-+-++ ..-+|+|.+|...- -.+...-..+. |+++..-- .+ ..++.-++..|-.
T Consensus 60 g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqmp~gvpVatV~---I~~ag~~nAa~lAa~Il~ 136 (166)
T 3oow_A 60 GLKVIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFA---IGMAGAKNAALFAASILQ 136 (166)
T ss_dssp TCCEEEEEECSSCCHHHHHHHTCSSCEEEEECCCTTTTTHHHHHHHHTCCTTSCCEECC---STHHHHHHHHHHHHHHHG
T ss_pred CCcEEEEECCcchhhHHHHHhccCCCEEEeecCcCCCCCHHHHHHHhcCCCCCceEEEe---cCCccchHHHHHHHHHHc
Confidence 234588877754332222 24589999998532 22222333443 54444321 11 2344444444433
Q ss_pred HhcCcchHHHHHHHHHHHHHhh
Q 044441 311 VLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 311 vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
+ . ++.++++.+.+++.++
T Consensus 137 ~-~---d~~l~~kl~~~r~~~~ 154 (166)
T 3oow_A 137 H-T---DINIAKALAEFRAEQT 154 (166)
T ss_dssp G-G---CHHHHHHHHHHHHHHH
T ss_pred C-C---CHHHHHHHHHHHHHHH
Confidence 2 2 4788888888777654
No 63
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=75.70 E-value=15 Score=29.21 Aligned_cols=138 Identities=15% Similarity=0.160 Sum_probs=69.9
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
+|.|-|-+||.. +....+++...|+..|..+-..+.+. +..|+.+.+ |+-... -.
T Consensus 7 ~~~V~IimgS~S--D~~v~~~a~~~L~~~gi~~ev~V~Sa--------HR~p~~~~~-------------~~~~a~-~~- 61 (174)
T 3lp6_A 7 RPRVGVIMGSDS--DWPVMADAAAALAEFDIPAEVRVVSA--------HRTPEAMFS-------------YARGAA-AR- 61 (174)
T ss_dssp CCSEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCT--------TTCHHHHHH-------------HHHHHH-HH-
T ss_pred CCeEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEECC--------CCCHHHHHH-------------HHHHHH-hC-
Confidence 345666677655 56788889999999888764444322 234443221 111110 01
Q ss_pred cccceeEeecCch----hHHHHHHhCcceeccccccch---hhHHHHHhHh--CeeeEeecCccCCCcCHHHHHHHHHHH
Q 044441 241 GRIGGFLSHCGWG----SAVEGMVFGVPIIAMPMVYEQ---SRNAKVVVDI--GMGMDVPRDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 241 ~~~~~~I~hgG~~----s~~eal~~GvP~i~~P~~~DQ---~~na~~~~~~--G~g~~l~~~~~~~~~~~~~l~~ai~~v 311 (333)
.+++||.-+|.- ++..++ .-+|+|.+|...-. .....-+.+. |+.+..--= .+..++.-++..|-.+
T Consensus 62 -g~~ViIa~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~daLlS~vqmp~GvpVatV~I--~~~~nAa~lAa~Il~~ 137 (174)
T 3lp6_A 62 -GLEVIIAGAGGAAHLPGMVAAA-TPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSI--GGAGNAGLLAVRMLGA 137 (174)
T ss_dssp -TCCEEEEEEESSCCHHHHHHHH-CSSCEEEEEECCSSGGGHHHHHHHHCCCTTCCCEECCT--TCHHHHHHHHHHHHHT
T ss_pred -CCCEEEEecCchhhhHHHHHhc-cCCCEEEeeCCCCCCCCHHHHHHHhhCCCCCeeEEEEc--CcchHHHHHHHHHHhC
Confidence 233477776643 333333 56899999975321 1222233333 543322100 1234445555444333
Q ss_pred hcCcchHHHHHHHHHHHHHh
Q 044441 312 LLQEEGKQIRRKAKEMSERM 331 (333)
Q Consensus 312 l~~~~~~~~~~~a~~l~~~~ 331 (333)
- ++.++++.+.+++.+
T Consensus 138 ~----d~~l~~kl~~~r~~~ 153 (174)
T 3lp6_A 138 A----NPQLRARIVAFQDRL 153 (174)
T ss_dssp T----CHHHHHHHHHHHHHH
T ss_pred C----CHHHHHHHHHHHHHH
Confidence 2 366666666666554
No 64
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=73.86 E-value=26 Score=28.39 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=54.5
Q ss_pred hhHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeE
Q 044441 148 DTKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGML 227 (333)
Q Consensus 148 ~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 227 (333)
-.++-.+|.+.. ..+|+.|.. .......++..+.+-.++-++..... . . ....+.
T Consensus 47 A~~lg~~LA~~G---~~vVsGg~~-----GiM~aa~~gAl~~GG~~iGVlP~e~~--------~-~--------~~~~~~ 101 (195)
T 1rcu_A 47 CLELGRTLAKKG---YLVFNGGRD-----GVMELVSQGVREAGGTVVGILPDEEA--------G-N--------PYLSVA 101 (195)
T ss_dssp HHHHHHHHHHTT---CEEEECCSS-----HHHHHHHHHHHHTTCCEEEEESTTCC--------C-C--------TTCSEE
T ss_pred HHHHHHHHHHCC---CEEEeCCHH-----HHHHHHHHHHHHcCCcEEEEeCCccc--------C-C--------CCccee
Confidence 345556666543 566665543 36666777766666566655543110 0 0 011232
Q ss_pred Ee--ccccch--hhccccccceeEeecCchhHHHH---HHhCcceecccc
Q 044441 228 VQ--GWVPQA--KILRHGRIGGFLSHCGWGSAVEG---MVFGVPIIAMPM 270 (333)
Q Consensus 228 ~~--~~~p~~--~ll~~~~~~~~I~hgG~~s~~ea---l~~GvP~i~~P~ 270 (333)
+. ...+.. .+...++ ..++--||.||+.|+ +.+|+|++.++.
T Consensus 102 ~~~~~~f~~Rk~~m~~~sd-a~IvlpGG~GTL~E~~eal~~~kPV~lln~ 150 (195)
T 1rcu_A 102 VKTGLDFQMRSFVLLRNAD-VVVSIGGEIGTAIEILGAYALGKPVILLRG 150 (195)
T ss_dssp EECCCCHHHHHHHHHTTCS-EEEEESCCHHHHHHHHHHHHTTCCEEEETT
T ss_pred eecCCCHHHHHHHHHHhCC-EEEEecCCCcHHHHHHHHHhcCCCEEEECC
Confidence 32 233432 3444445 456778888987665 679999999963
No 65
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=73.03 E-value=21 Score=28.33 Aligned_cols=140 Identities=13% Similarity=0.115 Sum_probs=71.9
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhcccc
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHG 241 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~ 241 (333)
+.|-|-+||.. +....+++...|+..|..+-..+.+. +..|+.+.+ |.... ...
T Consensus 13 ~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~ev~V~Sa--------HR~p~~~~~-------------~~~~a---~~~ 66 (174)
T 3kuu_A 13 VKIAIVMGSKS--DWATMQFAADVLTTLNVPFHVEVVSA--------HRTPDRLFS-------------FAEQA---EAN 66 (174)
T ss_dssp CCEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT--------TTCHHHHHH-------------HHHHT---TTT
T ss_pred CcEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEcc--------cCCHHHHHH-------------HHHHH---HhC
Confidence 35666667654 56788889899999888764444322 234443221 11111 111
Q ss_pred ccceeEeecCch----hHHHHHHhCcceeccccccc---hhhHHHHHhHh--CeeeEeecCccCCCcCHHHHHHHHHHHh
Q 044441 242 RIGGFLSHCGWG----SAVEGMVFGVPIIAMPMVYE---QSRNAKVVVDI--GMGMDVPRDKINQRLRREEVARVIKHVL 312 (333)
Q Consensus 242 ~~~~~I~hgG~~----s~~eal~~GvP~i~~P~~~D---Q~~na~~~~~~--G~g~~l~~~~~~~~~~~~~l~~ai~~vl 312 (333)
.+++||.-+|.- ++..+ ..-+|+|.+|.... -.+...-..+. |+.+..--=++.+..++.-++..|-.+
T Consensus 67 g~~ViIa~AG~aa~LpgvvA~-~t~~PVIgVP~~~~~l~G~dsLlS~vqmP~GvPVatV~I~~a~~~nAa~lAa~ILa~- 144 (174)
T 3kuu_A 67 GLHVIIAGNGGAAHLPGMLAA-KTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILAL- 144 (174)
T ss_dssp TCSEEEEEEESSCCHHHHHHH-TCSSCEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCSSHHHHHHHHHHHHHHHHT-
T ss_pred CCcEEEEECChhhhhHHHHHh-ccCCCEEEeeCCCCCCCCHHHHHHhhhCCCCCeeEEEEeCCccchHHHHHHHHHHcC-
Confidence 234477777653 33333 23589999998542 12222333443 543222100000123344444444333
Q ss_pred cCcchHHHHHHHHHHHHHhh
Q 044441 313 LQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 313 ~~~~~~~~~~~a~~l~~~~~ 332 (333)
. ++.++++.+++++.++
T Consensus 145 ~---d~~l~~kl~~~r~~~~ 161 (174)
T 3kuu_A 145 H---DTELAGRLAHWRQSQT 161 (174)
T ss_dssp T---CHHHHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHHHH
Confidence 2 4788888888777664
No 66
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=72.76 E-value=23 Score=27.90 Aligned_cols=141 Identities=18% Similarity=0.157 Sum_probs=70.4
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhcccc
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHG 241 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~ 241 (333)
|.|-|-+||.. +....+++...|+..|..+-..+... +..|+.+.+ |+... ...
T Consensus 7 ~~V~IimgS~S--D~~v~~~a~~~l~~~gi~~ev~V~Sa--------HR~p~~~~~-------------~~~~a---~~~ 60 (169)
T 3trh_A 7 IFVAILMGSDS--DLSTMETAFTELKSLGIPFEAHILSA--------HRTPKETVE-------------FVENA---DNR 60 (169)
T ss_dssp CEEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCT--------TTSHHHHHH-------------HHHHH---HHT
T ss_pred CcEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEEcc--------cCCHHHHHH-------------HHHHH---HhC
Confidence 46667777755 56788889999999888764444332 234443221 11111 111
Q ss_pred ccceeEeecCchhHHHHH---HhCcceeccccccch---hhHHHHHhH--hCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 242 RIGGFLSHCGWGSAVEGM---VFGVPIIAMPMVYEQ---SRNAKVVVD--IGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 242 ~~~~~I~hgG~~s~~eal---~~GvP~i~~P~~~DQ---~~na~~~~~--~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
.+++||.-+|.-.-+-++ ..-+|+|.+|...-. .+...-..+ .|+.+..---++.+..++.-++..|-.+ .
T Consensus 61 g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I~~a~~~nAa~lAa~Il~~-~ 139 (169)
T 3trh_A 61 GCAVFIAAAGLAAHLAGTIAAHTLKPVIGVPMAGGSLGGLDALLSTVQMPGGVPVACTAIGKAGAKNAAILAAQIIAL-Q 139 (169)
T ss_dssp TEEEEEEEECSSCCHHHHHHHTCSSCEEEEECCCSTTTTHHHHHHHHCCCTTSCCEECCSTHHHHHHHHHHHHHHHHT-T
T ss_pred CCcEEEEECChhhhhHHHHHhcCCCCEEEeecCCCCCCCHHHHHHhhcCCCCCceEEEecCCccchHHHHHHHHHHcC-C
Confidence 234488777754322222 235899999985422 222333444 3653222100000123344444444332 2
Q ss_pred CcchHHHHHHHHHHHHHhh
Q 044441 314 QEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 314 ~~~~~~~~~~a~~l~~~~~ 332 (333)
++.++++.+..++.++
T Consensus 140 ---d~~l~~kl~~~r~~~~ 155 (169)
T 3trh_A 140 ---DKSIAQKLVQQRTAKR 155 (169)
T ss_dssp ---CHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHH
Confidence 4667666666665543
No 67
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=71.89 E-value=33 Score=26.74 Aligned_cols=135 Identities=16% Similarity=0.153 Sum_probs=70.5
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhcccc
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHG 241 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~ 241 (333)
|.|-|-+||.. +....+++...|+..|.++-..+.+. +.+|+.+.+ |..+.. ..-
T Consensus 3 ~~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~sa--------HR~p~~~~~-------------~~~~a~--~~~ 57 (159)
T 3rg8_A 3 PLVIILMGSSS--DMGHAEKIASELKTFGIEYAIRIGSA--------HKTAEHVVS-------------MLKEYE--ALD 57 (159)
T ss_dssp CEEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEECCT--------TTCHHHHHH-------------HHHHHH--TSC
T ss_pred CeEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEcc--------cCCHHHHHH-------------HHHHhh--hcC
Confidence 35666677654 56788888899999888764444322 234443221 211111 100
Q ss_pred ccceeEeecCch----hHHHHHHhCcceeccccccc---hhhHHHHHhHh--CeeeEeecCccCCCcCHHHHHHHHHHHh
Q 044441 242 RIGGFLSHCGWG----SAVEGMVFGVPIIAMPMVYE---QSRNAKVVVDI--GMGMDVPRDKINQRLRREEVARVIKHVL 312 (333)
Q Consensus 242 ~~~~~I~hgG~~----s~~eal~~GvP~i~~P~~~D---Q~~na~~~~~~--G~g~~l~~~~~~~~~~~~~l~~ai~~vl 312 (333)
..++||.-+|.- ++..+ ..-+|+|.+|...- -.+ ...+.+. |+.+.-- .+..++.-++..|-.+
T Consensus 58 ~~~ViIa~AG~aa~LpgvvA~-~t~~PVIgVP~~~~~l~G~d-LlS~vqmp~GvpVatv----~~~~nAa~lA~~Il~~- 130 (159)
T 3rg8_A 58 RPKLYITIAGRSNALSGFVDG-FVKGATIACPPPSDSFAGAD-IYSSLRMPSGISPALV----LEPKNAALLAARIFSL- 130 (159)
T ss_dssp SCEEEEEECCSSCCHHHHHHH-HSSSCEEECCCCCCGGGGTH-HHHHHCCCTTCCCEEC----CSHHHHHHHHHHHHTT-
T ss_pred CCcEEEEECCchhhhHHHHHh-ccCCCEEEeeCCCCCCCCcc-HHHHHhCCCCCceEEe----cCchHHHHHHHHHHhC-
Confidence 234488877754 33333 35689999996432 222 2333333 5544331 1233444444444332
Q ss_pred cCcchHHHHHHHHHHHHHh
Q 044441 313 LQEEGKQIRRKAKEMSERM 331 (333)
Q Consensus 313 ~~~~~~~~~~~a~~l~~~~ 331 (333)
. ++.++++.+..++.+
T Consensus 131 ~---d~~l~~kl~~~r~~~ 146 (159)
T 3rg8_A 131 Y---DKEIADSVKSYMESN 146 (159)
T ss_dssp T---CHHHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHHH
Confidence 2 467777777766554
No 68
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=71.25 E-value=38 Score=27.20 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=57.0
Q ss_pred hHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEE
Q 044441 149 TKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLV 228 (333)
Q Consensus 149 ~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 228 (333)
.++-.+|.... ..+|+.|... ..+....++..+.+-.++=++....... + .+.. .-.+.++
T Consensus 23 ~~lg~~La~~g---~~lV~GGg~~----GiM~aa~~gA~~~gG~~iGv~p~~l~~~---e--~~~~-------~~~~~~~ 83 (191)
T 1t35_A 23 AELGVYMAEQG---IGLVYGGSRV----GLMGTIADAIMENGGTAIGVMPSGLFSG---E--VVHQ-------NLTELIE 83 (191)
T ss_dssp HHHHHHHHHTT---CEEEECCCCS----HHHHHHHHHHHTTTCCEEEEEETTCCHH---H--HTTC-------CCSEEEE
T ss_pred HHHHHHHHHCC---CEEEECCCcc----cHHHHHHHHHHHcCCeEEEEeCchhccc---c--cccC-------CCCcccc
Confidence 34556666543 6677776531 3667777777777666665555321110 0 0000 1122334
Q ss_pred eccccch-h-hccccccceeEeecCchhHHHH---H------HhCcceecccc
Q 044441 229 QGWVPQA-K-ILRHGRIGGFLSHCGWGSAVEG---M------VFGVPIIAMPM 270 (333)
Q Consensus 229 ~~~~p~~-~-ll~~~~~~~~I~hgG~~s~~ea---l------~~GvP~i~~P~ 270 (333)
....+.. . +...++ ..++--||.||+-|. + .+++|++.+-.
T Consensus 84 ~~~~~~Rk~~~~~~sd-a~IvlPGG~GTl~El~e~lt~~q~g~~~kPvvll~~ 135 (191)
T 1t35_A 84 VNGMHERKAKMSELAD-GFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNV 135 (191)
T ss_dssp ESHHHHHHHHHHHHCS-EEEECSCCHHHHHHHHHHHHTTSCSSCCCCEEEECG
T ss_pred CCCHHHHHHHHHHHCC-EEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEecC
Confidence 4555554 3 333444 557788889998776 4 38899999854
No 69
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=71.16 E-value=20 Score=28.07 Aligned_cols=138 Identities=15% Similarity=0.196 Sum_probs=71.3
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhcccc
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHG 241 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~ 241 (333)
+.|-|-+||.. +....+++...|+..|..+-..+.+. +.+|+.+.+ |.... ...
T Consensus 4 ~~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~Sa--------HR~p~~~~~-------------~~~~a---~~~ 57 (163)
T 3ors_A 4 MKVAVIMGSSS--DWKIMQESCNMLDYFEIPYEKQVVSA--------HRTPKMMVQ-------------FASEA---RER 57 (163)
T ss_dssp CCEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCT--------TTSHHHHHH-------------HHHHT---TTT
T ss_pred CeEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEECC--------cCCHHHHHH-------------HHHHH---HhC
Confidence 35666667654 56788889899998888764444322 234443221 11111 111
Q ss_pred ccceeEeecCch----hHHHHHHhCcceeccccccch---hhHHHHHhHh--Ce--eeEeecCccCCCcCHHHHHHHHHH
Q 044441 242 RIGGFLSHCGWG----SAVEGMVFGVPIIAMPMVYEQ---SRNAKVVVDI--GM--GMDVPRDKINQRLRREEVARVIKH 310 (333)
Q Consensus 242 ~~~~~I~hgG~~----s~~eal~~GvP~i~~P~~~DQ---~~na~~~~~~--G~--g~~l~~~~~~~~~~~~~l~~ai~~ 310 (333)
.+++||.-+|.- ++..++ .-+|+|.+|..... .+...-+.+. |+ +.+-- ++ .+..++.-++..|-.
T Consensus 58 g~~ViIa~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I-~~-a~~~nAa~lAa~Il~ 134 (163)
T 3ors_A 58 GINIIIAGAGGAAHLPGMVASL-TTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAI-GA-AGAKNAGILAARMLS 134 (163)
T ss_dssp TCCEEEEEEESSCCHHHHHHHH-CSSCEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCS-TH-HHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCchhhhHHHHHhc-cCCCEEEeeCCCCCCCCHHHHHHHhhCCCCCceEEEEc-CC-cccHHHHHHHHHHHh
Confidence 234477776643 333333 56899999975432 2222233334 55 33321 00 012344445544433
Q ss_pred HhcCcchHHHHHHHHHHHHHhh
Q 044441 311 VLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 311 vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
+- ++.++++.+.+++.++
T Consensus 135 ~~----d~~l~~kl~~~r~~~~ 152 (163)
T 3ors_A 135 IQ----NPSLVEKLNQYESSLI 152 (163)
T ss_dssp TT----CTHHHHHHHHHHHHHH
T ss_pred CC----CHHHHHHHHHHHHHHH
Confidence 32 3677777777766554
No 70
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=69.48 E-value=39 Score=26.97 Aligned_cols=138 Identities=20% Similarity=0.219 Sum_probs=70.8
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
-|.|-|-+||.. +....+++...|+..|.++-..+.+. ..+|+.+.+ |..+. ..
T Consensus 13 ~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~Sa--------HR~p~~l~~-------------~~~~a---~~ 66 (183)
T 1o4v_A 13 VPRVGIIMGSDS--DLPVMKQAAEILEEFGIDYEITIVSA--------HRTPDRMFE-------------YAKNA---EE 66 (183)
T ss_dssp -CEEEEEESCGG--GHHHHHHHHHHHHHTTCEEEEEECCT--------TTCHHHHHH-------------HHHHT---TT
T ss_pred CCeEEEEeccHH--HHHHHHHHHHHHHHcCCCeEEEEEcc--------cCCHHHHHH-------------HHHHH---Hh
Confidence 357778888765 56788889999999988764444322 234443221 11111 11
Q ss_pred cccceeEeecCch----hHHHHHHhCcceeccccccc--hhhHH-HHHhHh--CeeeEeecCccCCCcCHHHHHHHHHHH
Q 044441 241 GRIGGFLSHCGWG----SAVEGMVFGVPIIAMPMVYE--QSRNA-KVVVDI--GMGMDVPRDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 241 ~~~~~~I~hgG~~----s~~eal~~GvP~i~~P~~~D--Q~~na-~~~~~~--G~g~~l~~~~~~~~~~~~~l~~ai~~v 311 (333)
..+++||.=+|.- ++..++ .-+|+|.+|.... .-.++ ..+.+. |+.+..-.- .+..++.-++..|..+
T Consensus 67 ~g~~ViIa~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~I--d~~~nAa~lAaqIla~ 143 (183)
T 1o4v_A 67 RGIEVIIAGAGGAAHLPGMVASI-THLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAI--NNAKNAGILAASILGI 143 (183)
T ss_dssp TTCCEEEEEEESSCCHHHHHHHH-CSSCEEEEEECCTTTTTHHHHHHHHTCCTTCCCEECCT--TCHHHHHHHHHHHHHT
T ss_pred CCCcEEEEecCcccccHHHHHhc-cCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEec--CCchHHHHHHHHHHhc
Confidence 1233477666643 333333 6689999987542 22222 234455 644322100 1233444455444322
Q ss_pred hcCcchHHHHHHHHHHHHHh
Q 044441 312 LLQEEGKQIRRKAKEMSERM 331 (333)
Q Consensus 312 l~~~~~~~~~~~a~~l~~~~ 331 (333)
. ++.++++.+..++.+
T Consensus 144 -~---d~~l~~kL~~~r~~~ 159 (183)
T 1o4v_A 144 -K---YPEIARKVKEYKERM 159 (183)
T ss_dssp -T---CHHHHHHHHHHHHHH
T ss_pred -C---CHHHHHHHHHHHHHH
Confidence 2 456666666665544
No 71
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=68.53 E-value=4.7 Score=37.58 Aligned_cols=36 Identities=11% Similarity=0.001 Sum_probs=29.8
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
.++++++++.+||++|.... +..+|+++|||++.+.
T Consensus 365 ~~le~~i~~~~pDllig~~~---~~~~a~k~gip~~~~g 400 (458)
T 3pdi_B 365 EDLEHAARAGQAQLVIGNSH---ALASARRLGVPLLRAG 400 (458)
T ss_dssp HHHHHHHHHHTCSEEEECTT---HHHHHHHTTCCEEECS
T ss_pred HHHHHHHHhcCCCEEEEChh---HHHHHHHcCCCEEEec
Confidence 35778888999999999844 5779999999998754
No 72
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=68.40 E-value=25 Score=29.03 Aligned_cols=135 Identities=11% Similarity=0.109 Sum_probs=69.4
Q ss_pred hHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEE
Q 044441 149 TKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLV 228 (333)
Q Consensus 149 ~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 228 (333)
.++-.+|.... ..+|+.|... ..+....++..+.|-.++=++.... ...+ .+.+ .-..+.+
T Consensus 31 ~~lg~~LA~~g---~~lV~GGg~~----GlM~aa~~gA~~~GG~~iGv~p~~l---~~~e--~~~~-------~~~~~~~ 91 (216)
T 1ydh_A 31 IELGNELVKRK---IDLVYGGGSV----GLMGLISRRVYEGGLHVLGIIPKAL---MPIE--ISGE-------TVGDVRV 91 (216)
T ss_dssp HHHHHHHHHTT---CEEEECCCSS----HHHHHHHHHHHHTTCCEEEEEEGGG---HHHH--CCSS-------CCSEEEE
T ss_pred HHHHHHHHHCC---CEEEECCCcc----cHhHHHHHHHHHcCCcEEEEechhc---Cccc--cccC-------CCCcccc
Confidence 34555665543 5566666531 3666666666666655555543210 0000 0000 1112444
Q ss_pred eccccch--hhccccccceeEeecCchhHHHHH---------HhCcceecccc--ccchhhH-HHHHhHhCee-------
Q 044441 229 QGWVPQA--KILRHGRIGGFLSHCGWGSAVEGM---------VFGVPIIAMPM--VYEQSRN-AKVVVDIGMG------- 287 (333)
Q Consensus 229 ~~~~p~~--~ll~~~~~~~~I~hgG~~s~~eal---------~~GvP~i~~P~--~~DQ~~n-a~~~~~~G~g------- 287 (333)
....+.. .+...++ ..++--||.||+-|.. .+++|++.+-. +.|...+ ...+.+.|.=
T Consensus 92 ~~~~~~Rk~~~~~~sd-a~I~lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~~~~~ 170 (216)
T 1ydh_A 92 VADMHERKAAMAQEAE-AFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNI 170 (216)
T ss_dssp ESSHHHHHHHHHHHCS-EEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTT
T ss_pred cCCHHHHHHHHHHhCC-EEEEeCCCccHHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCChHHcCe
Confidence 4555543 2334444 4567788899988776 47999999853 2232222 2445554431
Q ss_pred eEeecCccCCCcCHHHHHHHHHH
Q 044441 288 MDVPRDKINQRLRREEVARVIKH 310 (333)
Q Consensus 288 ~~l~~~~~~~~~~~~~l~~ai~~ 310 (333)
+.+. -+++++.+.|++
T Consensus 171 ~~~~-------d~~ee~~~~l~~ 186 (216)
T 1ydh_A 171 VVSA-------PTAKELMEKMEE 186 (216)
T ss_dssp EEEE-------SSHHHHHHHHHH
T ss_pred EEEe-------CCHHHHHHHHHH
Confidence 1221 267777777765
No 73
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=67.98 E-value=22 Score=28.16 Aligned_cols=141 Identities=14% Similarity=0.156 Sum_probs=72.1
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
.|.|-|-+||.. +....++....|+..|..+-..+... +..|+.+.+ |+-.. ..
T Consensus 12 ~P~V~IimGS~S--D~~v~~~a~~~l~~~gi~~ev~V~sa--------HR~p~~l~~-------------~~~~a---~~ 65 (173)
T 4grd_A 12 APLVGVLMGSSS--DWDVMKHAVAILQEFGVPYEAKVVSA--------HRMPDEMFD-------------YAEKA---RE 65 (173)
T ss_dssp SCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT--------TTSHHHHHH-------------HHHHH---TT
T ss_pred CCeEEEEeCcHh--HHHHHHHHHHHHHHcCCCEEEEEEcc--------ccCHHHHHH-------------HHHHH---Hh
Confidence 467878888865 56788888999999988764444322 234443221 11111 11
Q ss_pred cccceeEeecCch----hHHHHHHhCcceeccccccch---hhHHHHHhHh--CeeeEeecCccCCCcCHHHHHHHHHHH
Q 044441 241 GRIGGFLSHCGWG----SAVEGMVFGVPIIAMPMVYEQ---SRNAKVVVDI--GMGMDVPRDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 241 ~~~~~~I~hgG~~----s~~eal~~GvP~i~~P~~~DQ---~~na~~~~~~--G~g~~l~~~~~~~~~~~~~l~~ai~~v 311 (333)
..++++|.-.|.- ++..+ ..-+|+|.+|..... .+--..+.+. |+.+-.---...+..++.-++.. +
T Consensus 66 ~g~~ViIa~AG~aahLpgvvA~-~t~~PVIgVPv~~~~l~G~dsLlSivqMP~Gvpvatv~i~~~~a~NAallA~~---I 141 (173)
T 4grd_A 66 RGLRAIIAGAGGAAHLPGMLAA-KTTVPVLGVPVASKYLKGVDSLHSIVQMPKGVPVATFAIGEAGAANAALFAVS---I 141 (173)
T ss_dssp TTCSEEEEEEESSCCHHHHHHH-HCCSCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHH---H
T ss_pred cCCeEEEEeccccccchhhhee-cCCCCEEEEEcCCCCCCchhHHHHHHhCCCCCCceEEecCCcchHHHHHHHHH---H
Confidence 1233466655532 34433 457999999975432 2223334444 54333210000011223333333 3
Q ss_pred hcCcchHHHHHHHHHHHHHhh
Q 044441 312 LLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 312 l~~~~~~~~~~~a~~l~~~~~ 332 (333)
|.-. ++.++++.+++++.++
T Consensus 142 La~~-d~~l~~kl~~~r~~~~ 161 (173)
T 4grd_A 142 LSGN-SVDYANRLAAFRVRQN 161 (173)
T ss_dssp HTTS-CHHHHHHHHHHHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHH
Confidence 3211 5777777777766654
No 74
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=66.89 E-value=11 Score=27.20 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=28.3
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-------CCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-------HIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 47 (333)
.+..+.+++.+||+||.|...+ -|..+.+.+ ++|.|.++...
T Consensus 36 ~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~ 86 (122)
T 3gl9_A 36 QIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKG 86 (122)
T ss_dssp HHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCC
T ss_pred HHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 3455667778999999995433 355565543 58888877543
No 75
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=66.41 E-value=4.8 Score=34.26 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=26.0
Q ss_pred HHHHHhhcCCCEEEEc----------CC---chhHHHHHHHcCCCeEEEec
Q 044441 8 FCNILETLKPTLVMYD----------LF---QPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 8 l~~~l~~~~pD~vv~D----------~~---~~~~~~~A~~lgiP~v~~~~ 45 (333)
+..++.+.+||+||+- .+ +.+|+.-|..+|||.|.++.
T Consensus 77 l~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~ 127 (251)
T 2wqk_A 77 YRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSA 127 (251)
T ss_dssp HHTTTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred hhhhcCCCCCCEEEeCccCCCccccceecchHHHHHHHHHhcCCCeEEEEc
Confidence 3345666799999983 22 23445555678999999984
No 76
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=65.25 E-value=50 Score=26.26 Aligned_cols=141 Identities=15% Similarity=0.149 Sum_probs=73.5
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
+|.|-|-+||.. +....++..+.|++.|..+-..+-.. ...|+.+.+ |.-.. ..
T Consensus 22 kp~V~IimGS~S--D~~v~~~a~~~L~~~gI~~e~~V~SA--------HRtp~~l~~-------------~~~~a---~~ 75 (181)
T 4b4k_A 22 KSLVGVIMGSTS--DWETMKYACDILDELNIPYEKKVVSA--------HRTPDYMFE-------------YAETA---RE 75 (181)
T ss_dssp CCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT--------TTSHHHHHH-------------HHHHT---TT
T ss_pred CccEEEEECCHh--HHHHHHHHHHHHHHcCCCeeEEEEcc--------ccChHHHHH-------------HHHHH---Hh
Confidence 467888899876 56788899999999998765444432 234443221 11111 11
Q ss_pred cccceeEeecCch----hHHHHHHhCcceecccccc---chhhHHHHHhHh--CeeeEeecCccCCCcCHHHHHHHHHHH
Q 044441 241 GRIGGFLSHCGWG----SAVEGMVFGVPIIAMPMVY---EQSRNAKVVVDI--GMGMDVPRDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 241 ~~~~~~I~hgG~~----s~~eal~~GvP~i~~P~~~---DQ~~na~~~~~~--G~g~~l~~~~~~~~~~~~~l~~ai~~v 311 (333)
..++++|.=+|.- ++..+ ..-+|+|.+|... +-.+....+.+. |+.+.--- .+...+..-.-...++
T Consensus 76 ~g~~ViIa~AG~aahLpGvvAa-~T~~PVIGVPv~s~~l~G~DsLlSivQMP~GvpVaTva---ig~~ga~NAallA~qI 151 (181)
T 4b4k_A 76 RGLKVIIAGAGGAAHLPGMVAA-KTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVA---IGKAGSTNAGLLAAQI 151 (181)
T ss_dssp TTCCEEEEEECSSCCHHHHHHT-TCCSCEEEEECCCTTTTTHHHHHHHHTCCTTCCCEECC---SSHHHHHHHHHHHHHH
T ss_pred cCceEEEEeccccccchhhHHh-cCCCCEEEEecCCCCccchhhHHHHHhCCCCCceEEEe---cCCccHHHHHHHHHHH
Confidence 1334477666643 33333 4568999999854 334444455555 44433210 1111112212222234
Q ss_pred hcCcchHHHHHHHHHHHHHhh
Q 044441 312 LLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 312 l~~~~~~~~~~~a~~l~~~~~ 332 (333)
|.-. +++++++.+..++.++
T Consensus 152 La~~-d~~l~~kl~~~r~~~~ 171 (181)
T 4b4k_A 152 LGSF-HDDIHDALELRREAIE 171 (181)
T ss_dssp HTTT-CHHHHHHHHHHHHHHH
T ss_pred HccC-CHHHHHHHHHHHHHHH
Confidence 4311 4677777776666543
No 77
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=65.10 E-value=9.9 Score=28.70 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=28.9
Q ss_pred HHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-------CCCeEEEechh
Q 044441 7 AFCNILETLKPTLVMYDLFQP--WAAEAAYQY-------HIAAVLFLTIS 47 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 47 (333)
+..+.+++.+||+||.|..+| -|..+++.+ .+|.|.++...
T Consensus 48 ~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~ 97 (134)
T 3to5_A 48 TALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEA 97 (134)
T ss_dssp HHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSC
T ss_pred HHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCC
Confidence 344567778999999995433 477777654 48988877654
No 78
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=64.16 E-value=51 Score=25.96 Aligned_cols=141 Identities=17% Similarity=0.166 Sum_probs=74.3
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
+|.|-|-+||.. +....+++...|+..|.++-..+... ..+|+.+.+ |..+. ..
T Consensus 11 ~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~Sa--------HR~p~~l~~-------------~~~~a---~~ 64 (170)
T 1xmp_A 11 KSLVGVIMGSTS--DWETMKYACDILDELNIPYEKKVVSA--------HRTPDYMFE-------------YAETA---RE 64 (170)
T ss_dssp CCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT--------TTSHHHHHH-------------HHHHT---TT
T ss_pred CCcEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEec--------cCCHHHHHH-------------HHHHH---Hh
Confidence 457777778765 57788889899999888764444322 234443221 11111 01
Q ss_pred cccceeEeecCchhHHHHH---HhCcceeccccccc--hh-hHHHHHhH--hCeeeEee-cCccCCCcCHHHHHHHHHHH
Q 044441 241 GRIGGFLSHCGWGSAVEGM---VFGVPIIAMPMVYE--QS-RNAKVVVD--IGMGMDVP-RDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 241 ~~~~~~I~hgG~~s~~eal---~~GvP~i~~P~~~D--Q~-~na~~~~~--~G~g~~l~-~~~~~~~~~~~~l~~ai~~v 311 (333)
..+++||.=+|.-.-+-.+ ..-+|+|.+|.... .- +-..-+.+ .|+.+..- -++ .+..++.-++..|..
T Consensus 65 ~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~daLlSivqmP~GvpVatV~I~~-a~~~nAallAaqIla- 142 (170)
T 1xmp_A 65 RGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGK-AGSTNAGLLAAQILG- 142 (170)
T ss_dssp TTCCEEEEEEESSCCHHHHHHTTCCSCEEEEEECCTTTTTHHHHHHHHCCCTTCCCEECCSSH-HHHHHHHHHHHHHHH-
T ss_pred CCCcEEEEECCchhhhHHHHHhccCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEecCC-cchHHHHHHHHHHHc-
Confidence 1233477766643322222 24689999998542 12 22233455 46653221 000 022445555555533
Q ss_pred hcCcchHHHHHHHHHHHHHhh
Q 044441 312 LLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 312 l~~~~~~~~~~~a~~l~~~~~ 332 (333)
+. ++.++++.+.+++.++
T Consensus 143 ~~---d~~l~~kl~~~r~~~~ 160 (170)
T 1xmp_A 143 SF---HDDIHDALELRREAIE 160 (170)
T ss_dssp TT---CHHHHHHHHHHHHHHH
T ss_pred cC---CHHHHHHHHHHHHHHH
Confidence 23 4778888887777654
No 79
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=63.99 E-value=6.7 Score=29.22 Aligned_cols=40 Identities=8% Similarity=-0.058 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHH---cCCCeEEEec
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQ---YHIAAVLFLT 45 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~---lgiP~v~~~~ 45 (333)
.+..+++++.+||+||.|..++ -|..+++. .++|+|.++.
T Consensus 43 ~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lTa 87 (123)
T 2lpm_A 43 QEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFATG 87 (123)
T ss_dssp HHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBCT
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEec
Confidence 4455677888999999995433 34555544 5789777653
No 80
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=61.67 E-value=11 Score=32.19 Aligned_cols=41 Identities=7% Similarity=0.080 Sum_probs=32.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCc------hhHHHHHHHcCCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQ------PWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~------~~~~~~A~~lgiP~v~~~~~ 46 (333)
..+.+++++.+||+|++-..+ ..+..+|.+||+|.++....
T Consensus 102 ~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 148 (264)
T 1o97_C 102 RILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVAD 148 (264)
T ss_dssp HHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCcccceEE
Confidence 456677788899999987433 37889999999999997754
No 81
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=60.35 E-value=8.4 Score=36.23 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=30.0
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEE
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLF 43 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~ 43 (333)
..++.+.+++.+||++|.. ..+..+|+++|||++.+
T Consensus 406 ~~el~~~i~~~~pDL~ig~---~~~~~ia~k~gIP~~~~ 441 (492)
T 3u7q_A 406 GYEFEEFVKRIKPDLIGSG---IKEKFIFQKMGIPFREM 441 (492)
T ss_dssp HHHHHHHHHHHCCSEEEEC---HHHHHHHHHTTCCEEES
T ss_pred HHHHHHHHHhcCCcEEEeC---cchhHHHHHcCCCEEec
Confidence 4567788889999999997 45678999999999964
No 82
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=59.19 E-value=6.8 Score=33.35 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=38.1
Q ss_pred cceeEeecCchhHHHHHHh---CcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcC
Q 044441 243 IGGFLSHCGWGSAVEGMVF---GVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQ 314 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~~---GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~ 314 (333)
++++|+-||=||+++++.. ++|+++++... +|... .+.++++.++++.++++
T Consensus 42 ~D~vv~~GGDGTll~~a~~~~~~~PilGIn~G~-------------~Gfl~-------~~~~~~~~~al~~i~~g 96 (258)
T 1yt5_A 42 ADLIVVVGGDGTVLKAAKKAADGTPMVGFKAGR-------------LGFLT-------SYTLDEIDRFLEDLRNW 96 (258)
T ss_dssp CSEEEEEECHHHHHHHHTTBCTTCEEEEEESSS-------------CCSSC-------CBCGGGHHHHHHHHHTT
T ss_pred CCEEEEEeCcHHHHHHHHHhCCCCCEEEEECCC-------------CCccC-------cCCHHHHHHHHHHHHcC
Confidence 4559999999999999866 88988886321 12222 25678888899888873
No 83
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=58.64 E-value=19 Score=25.66 Aligned_cols=42 Identities=19% Similarity=0.468 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHH----cCCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQ----YHIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~----lgiP~v~~~~~~ 47 (333)
.+..+.+++.+||+||.|...+ .|..+++. .++|.|.++...
T Consensus 36 ~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 36 NEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp HHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred HHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 4455667778999999995433 35555543 368888876543
No 84
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=58.46 E-value=53 Score=26.39 Aligned_cols=101 Identities=11% Similarity=0.039 Sum_probs=53.7
Q ss_pred hHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEE
Q 044441 149 TKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLV 228 (333)
Q Consensus 149 ~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 228 (333)
.++-++|.+.. ..+|+.|... ..+.++.++..+.+-.++=+....... ...+.. .-...++
T Consensus 34 ~~lg~~la~~g---~~lv~GGG~~----GlM~a~~~ga~~~GG~viGv~p~~l~~-----~e~~~~-------~~~~~i~ 94 (189)
T 3sbx_A 34 GAVGAAIAARG---WTLVWGGGHV----SAMGAVSSAARAHGGWTVGVIPKMLVH-----RELADH-------DADELVV 94 (189)
T ss_dssp HHHHHHHHHTT---CEEEECCBCS----HHHHHHHHHHHTTTCCEEEEEETTTTT-----TTTBCT-------TCSEEEE
T ss_pred HHHHHHHHHCC---CEEEECCCcc----CHHHHHHHHHHHcCCcEEEEcCchhhh-----cccCCC-------CCCeeEE
Confidence 34555665543 5566665431 367777777766666665554432110 001110 1112334
Q ss_pred eccccch--hhccccccceeEeecCchhHHHHH---------HhCcceeccc
Q 044441 229 QGWVPQA--KILRHGRIGGFLSHCGWGSAVEGM---------VFGVPIIAMP 269 (333)
Q Consensus 229 ~~~~p~~--~ll~~~~~~~~I~hgG~~s~~eal---------~~GvP~i~~P 269 (333)
.++.... .+..+++ ..++--||.||+-|.. .+++|++.+=
T Consensus 95 ~~~~~~Rk~~m~~~sd-a~IalPGG~GTLdElfe~lt~~qlg~~~kPvvlln 145 (189)
T 3sbx_A 95 TETMWERKQVMEDRAN-AFITLPGGVGTLDELLDVWTEGYLGMHDKSIVVLD 145 (189)
T ss_dssp ESSHHHHHHHHHHHCS-EEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEEC
T ss_pred cCCHHHHHHHHHHHCC-EEEEeCCCcchHHHHHHHHHHHHhcccCCCEEEec
Confidence 4444443 3444555 3456677889988874 2689999884
No 85
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=58.13 E-value=18 Score=26.55 Aligned_cols=42 Identities=7% Similarity=0.092 Sum_probs=27.8
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-------CCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-------HIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 47 (333)
.+..+.+++.+||+||.|...+ .|..+++.+ .+|.|.++...
T Consensus 38 ~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 38 EEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCC
Confidence 3455667778999999995433 355555432 58888877654
No 86
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=57.83 E-value=14 Score=31.34 Aligned_cols=41 Identities=15% Similarity=0.021 Sum_probs=32.2
Q ss_pred HHHHHHHhhcCCCEEEEcCCc------hhHHHHHHHcCCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQ------PWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~------~~~~~~A~~lgiP~v~~~~~ 46 (333)
..+.+++++.+||+|++-..+ ..+..+|.+||+|.++....
T Consensus 106 ~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~vt~v~~ 152 (255)
T 1efv_B 106 RVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQ 152 (255)
T ss_dssp HHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCCCcccceEE
Confidence 356667777789999987433 37889999999999997654
No 87
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=57.73 E-value=17 Score=26.60 Aligned_cols=65 Identities=8% Similarity=-0.038 Sum_probs=44.2
Q ss_pred ccccccceeEeecCchh---------HHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHH
Q 044441 238 LRHGRIGGFLSHCGWGS---------AVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVI 308 (333)
Q Consensus 238 l~~~~~~~~I~hgG~~s---------~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai 308 (333)
+..+++ +|...|..| +-.|...|+|+|++=.++.+. --..+++.+..++- .+.+.|.++|
T Consensus 36 I~~~~~--vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~-~P~~l~~~a~~iV~--------Wn~~~I~~aI 104 (111)
T 1eiw_A 36 PEDADA--VIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLEN-VPPELEAVSSEVVG--------WNPHCIRDAL 104 (111)
T ss_dssp SSSCSE--EEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSC-CCTTHHHHCSEEEC--------SCHHHHHHHH
T ss_pred cccCCE--EEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCc-CCHHHHhhCceecc--------CCHHHHHHHH
Confidence 454555 888888877 556778999999994444331 22225555555444 6899999999
Q ss_pred HHHhc
Q 044441 309 KHVLL 313 (333)
Q Consensus 309 ~~vl~ 313 (333)
+..+.
T Consensus 105 ~~~~~ 109 (111)
T 1eiw_A 105 EDALD 109 (111)
T ss_dssp HHHHC
T ss_pred HhccC
Confidence 88764
No 88
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=56.67 E-value=10 Score=35.85 Aligned_cols=36 Identities=6% Similarity=0.149 Sum_probs=30.4
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
.++.+++++.+||++|.+ .....+|+++|||++.+.
T Consensus 362 ~el~~~i~~~~pDl~ig~---~~~r~~a~k~gip~~~i~ 397 (511)
T 2xdq_B 362 TVVGDAIARVEPAAIFGT---QMERHVGKRLNIPCGVIA 397 (511)
T ss_dssp HHHHHHHHHHCCSEEEEC---HHHHHHHHHHTCCEEECS
T ss_pred HHHHHHHHhcCCCEEEec---cchHHHHHhcCCCeEecc
Confidence 367888899999999988 567778899999999864
No 89
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=56.65 E-value=10 Score=36.01 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=29.8
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
.++.+++++.+||++|.+ .....+|+++|||++.+.
T Consensus 339 ~el~~~i~~~~pDL~ig~---~~~~~~a~~~giP~~~i~ 374 (525)
T 3aek_B 339 LEVEKAIEAAAPELILGT---QMERNIAKKLGLPCAVIS 374 (525)
T ss_dssp HHHHHHHHHHCCSEEEEC---HHHHHHHHHHTCCEEECS
T ss_pred HHHHHHHhhcCCCEEEec---chhHHHHHHcCCCEEEec
Confidence 467778888899999998 467778999999999754
No 90
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=56.65 E-value=54 Score=27.07 Aligned_cols=144 Identities=10% Similarity=-0.039 Sum_probs=70.5
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
++++.|..|.+ ....+..|.+.|..+.+..... .+++.+.. ...++......-..+.|..
T Consensus 32 k~VLVVGgG~v-------a~~ka~~Ll~~GA~VtVvap~~-----------~~~l~~l~--~~~~i~~i~~~~~~~dL~~ 91 (223)
T 3dfz_A 32 RSVLVVGGGTI-------ATRRIKGFLQEGAAITVVAPTV-----------SAEINEWE--AKGQLRVKRKKVGEEDLLN 91 (223)
T ss_dssp CCEEEECCSHH-------HHHHHHHHGGGCCCEEEECSSC-----------CHHHHHHH--HTTSCEEECSCCCGGGSSS
T ss_pred CEEEEECCCHH-------HHHHHHHHHHCCCEEEEECCCC-----------CHHHHHHH--HcCCcEEEECCCCHhHhCC
Confidence 44777766643 3455667777788877664421 12222211 1223433222222344565
Q ss_pred cccceeEeecCchhHHHHHHh----CcceeccccccchhhHHH-----HHhHhCeeeEeecCccCCCcCHHHHHHHHHHH
Q 044441 241 GRIGGFLSHCGWGSAVEGMVF----GVPIIAMPMVYEQSRNAK-----VVVDIGMGMDVPRDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 241 ~~~~~~I~hgG~~s~~eal~~----GvP~i~~P~~~DQ~~na~-----~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~v 311 (333)
+++ +|.--|.-.+.+.++. |+|+-+ .|.+..+. .+.+-++-+.+..+. ..-.-+..|++.|+..
T Consensus 92 adL--VIaAT~d~~~N~~I~~~ak~gi~VNv----vD~p~~~~f~~Paiv~rg~l~iaIST~G-~sP~la~~iR~~ie~~ 164 (223)
T 3dfz_A 92 VFF--IVVATNDQAVNKFVKQHIKNDQLVNM----ASSFSDGNIQIPAQFSRGRLSLAISTDG-ASPLLTKRIKEDLSSN 164 (223)
T ss_dssp CSE--EEECCCCTHHHHHHHHHSCTTCEEEC---------CCSEECCEEEEETTEEEEEECTT-SCHHHHHHHHHHHHHH
T ss_pred CCE--EEECCCCHHHHHHHHHHHhCCCEEEE----eCCcccCeEEEeeEEEeCCEEEEEECCC-CCcHHHHHHHHHHHHH
Confidence 554 8888887666655543 555333 34433332 223335666665321 1223456677777777
Q ss_pred hcCcchHHHHHHHHHHHHHhh
Q 044441 312 LLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 312 l~~~~~~~~~~~a~~l~~~~~ 332 (333)
+.. +-..+-+.+.++++.++
T Consensus 165 lp~-~~~~~~~~~~~~R~~vk 184 (223)
T 3dfz_A 165 YDE-SYTQYTQFLYECRVLIH 184 (223)
T ss_dssp SCT-HHHHHHHHHHHHHHHHH
T ss_pred ccH-HHHHHHHHHHHHHHHHH
Confidence 742 12355666666666553
No 91
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=56.36 E-value=30 Score=28.11 Aligned_cols=100 Identities=13% Similarity=0.106 Sum_probs=51.8
Q ss_pred HHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEe
Q 044441 150 KIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQ 229 (333)
Q Consensus 150 ~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 229 (333)
++-++|.+.. ..+|+.|... ..+..+.++..+.|-.++=++...... ...+.. .-...++.
T Consensus 44 ~lg~~La~~g---~~lV~GGG~~----GlM~a~~~gA~~~GG~viGv~p~~l~~-----~e~~~~-------~~~~~i~~ 104 (199)
T 3qua_A 44 EVGSSIAARG---WTLVSGGGNV----SAMGAVAQAARAKGGHTVGVIPKALVH-----RELADV-------DAAELIVT 104 (199)
T ss_dssp HHHHHHHHTT---CEEEECCBCS----HHHHHHHHHHHHTTCCEEEEEEGGGTT-----TTTBCT-------TSSEEEEE
T ss_pred HHHHHHHHCC---CEEEECCCcc----CHHHHHHHHHHHcCCcEEEEeCchhhh-----ccccCC-------CCCeeEEc
Confidence 4555665543 4556655431 366666666666665555554421100 001110 11223444
Q ss_pred ccccch--hhccccccceeEeecCchhHHHHHH---------hCcceeccc
Q 044441 230 GWVPQA--KILRHGRIGGFLSHCGWGSAVEGMV---------FGVPIIAMP 269 (333)
Q Consensus 230 ~~~p~~--~ll~~~~~~~~I~hgG~~s~~eal~---------~GvP~i~~P 269 (333)
++.... .+..+++. .++--||.||+-|... +++|++.+-
T Consensus 105 ~~~~~Rk~~m~~~sda-~IalPGG~GTldEl~e~lt~~qlg~~~kPvvlln 154 (199)
T 3qua_A 105 DTMRERKREMEHRSDA-FIALPGGIGTLEEFFEAWTAGYLGMHDKPLILLD 154 (199)
T ss_dssp SSHHHHHHHHHHHCSE-EEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEEC
T ss_pred CCHHHHHHHHHHhcCc-cEEeCCCccHHHHHHHHHHHHHhccCCCCEEEEc
Confidence 444433 33444453 4566778899888742 699999884
No 92
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=56.12 E-value=14 Score=27.38 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=27.2
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc---------CCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY---------HIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l---------giP~v~~~~~ 46 (333)
.+..+.++..+||+||.|...+ -|..+++.+ .+|.|.++..
T Consensus 48 ~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~ 99 (143)
T 3m6m_D 48 EQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSAD 99 (143)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESC
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCC
Confidence 3455667778999999995433 355555543 2788887654
No 93
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=55.67 E-value=17 Score=31.71 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=23.3
Q ss_pred cceeEeecCchhHHHHHHh----Ccceecccc
Q 044441 243 IGGFLSHCGWGSAVEGMVF----GVPIIAMPM 270 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~~----GvP~i~~P~ 270 (333)
++++|+-||=||+++++.. ++|++.++.
T Consensus 76 ~d~vi~~GGDGT~l~a~~~~~~~~~pvlgi~~ 107 (307)
T 1u0t_A 76 CELVLVLGGDGTFLRAAELARNASIPVLGVNL 107 (307)
T ss_dssp CCCEEEEECHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCEEEEEeCCHHHHHHHHHhccCCCCEEEEeC
Confidence 3459999999999999744 899998874
No 94
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=55.62 E-value=15 Score=31.18 Aligned_cols=41 Identities=10% Similarity=-0.017 Sum_probs=32.2
Q ss_pred HHHHHHHhhcCCCEEEEcCCc------hhHHHHHHHcCCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQ------PWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~------~~~~~~A~~lgiP~v~~~~~ 46 (333)
..+.+++++..||+|++-..+ ..+..+|.+||+|.++....
T Consensus 103 ~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 149 (252)
T 1efp_B 103 KILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASK 149 (252)
T ss_dssp HHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCccccEEE
Confidence 456667777789999987433 37889999999999997654
No 95
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=55.53 E-value=23 Score=30.71 Aligned_cols=81 Identities=9% Similarity=0.058 Sum_probs=47.0
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccccc
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHGR 242 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~~ 242 (333)
.++++--|-.....+.+..+...|.+.+..+.+......+.. ..+. .+ +.. .
T Consensus 12 ~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a--------~~~~----------------~~--~~~--~ 63 (304)
T 3s40_A 12 LLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDA--------TKYC----------------QE--FAS--K 63 (304)
T ss_dssp EEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHH--------HHHH----------------HH--HTT--T
T ss_pred EEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchH--------HHHH----------------HH--hhc--C
Confidence 444444332222345667777788777777666544322110 0010 11 112 3
Q ss_pred cceeEeecCchhHHHHHH------hCcceeccccc
Q 044441 243 IGGFLSHCGWGSAVEGMV------FGVPIIAMPMV 271 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~------~GvP~i~~P~~ 271 (333)
.+.+|.-||=||+.|++. .++|+-++|..
T Consensus 64 ~d~vv~~GGDGTl~~v~~~l~~~~~~~~l~iiP~G 98 (304)
T 3s40_A 64 VDLIIVFGGDGTVFECTNGLAPLEIRPTLAIIPGG 98 (304)
T ss_dssp CSEEEEEECHHHHHHHHHHHTTCSSCCEEEEEECS
T ss_pred CCEEEEEccchHHHHHHHHHhhCCCCCcEEEecCC
Confidence 344999999999999863 57899999973
No 96
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=55.14 E-value=11 Score=35.03 Aligned_cols=37 Identities=14% Similarity=0.034 Sum_probs=29.9
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
..++.+++++.+||++|.+.. ...+|+++|||++.+.
T Consensus 374 ~~~l~~~i~~~~pDl~ig~~~---~~~~a~k~gip~~~~~ 410 (458)
T 1mio_B 374 FFDVHQWIKNEGVDLLISNTY---GKFIAREENIPFVRFG 410 (458)
T ss_dssp HHHHHHHHHHSCCSEEEESGG---GHHHHHHHTCCEEECS
T ss_pred HHHHHHHHHhcCCCEEEeCcc---hHHHHHHcCCCEEEee
Confidence 345778888899999999843 5778999999999863
No 97
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=54.85 E-value=19 Score=32.10 Aligned_cols=36 Identities=8% Similarity=-0.106 Sum_probs=23.5
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEec
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRL 199 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 199 (333)
++++.+.||-+. ..-..++++.|.+.|..++|..+.
T Consensus 4 ~i~i~~GGTgGH--i~palala~~L~~~g~~V~~vg~~ 39 (365)
T 3s2u_A 4 NVLIMAGGTGGH--VFPALACAREFQARGYAVHWLGTP 39 (365)
T ss_dssp EEEEECCSSHHH--HHHHHHHHHHHHHTTCEEEEEECS
T ss_pred cEEEEcCCCHHH--HHHHHHHHHHHHhCCCEEEEEECC
Confidence 366655666442 112356788898899999998654
No 98
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=54.50 E-value=8.1 Score=36.26 Aligned_cols=36 Identities=3% Similarity=0.021 Sum_probs=29.3
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEE
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLF 43 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~ 43 (333)
..++.+.+++.+||++|... .+..+|+++|||++.+
T Consensus 390 ~~el~~~i~~~~pDL~ig~~---~~~~~a~k~gIP~~~~ 425 (483)
T 3pdi_A 390 ARVLLKTVDEYQADILIAGG---RNMYTALKGRVPFLDI 425 (483)
T ss_dssp HHHHHHHHHHTTCSEEECCG---GGHHHHHHTTCCBCCC
T ss_pred HHHHHHHHHhcCCCEEEECC---chhHHHHHcCCCEEEe
Confidence 45778888999999999973 4557899999999754
No 99
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=53.94 E-value=16 Score=29.59 Aligned_cols=37 Identities=8% Similarity=-0.023 Sum_probs=29.2
Q ss_pred HHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechhH
Q 044441 9 CNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTISA 48 (333)
Q Consensus 9 ~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~ 48 (333)
.+-+++...|+||.| ..+..+|+++|+|.+.+.++..
T Consensus 135 i~~l~~~G~~vvVG~---~~~~~~A~~~Gl~~vli~sg~e 171 (196)
T 2q5c_A 135 ISKVKTENIKIVVSG---KTVTDEAIKQGLYGETINSGEE 171 (196)
T ss_dssp HHHHHHTTCCEEEEC---HHHHHHHHHTTCEEEECCCCHH
T ss_pred HHHHHHCCCeEEECC---HHHHHHHHHcCCcEEEEecCHH
Confidence 334455689999999 5568899999999999887543
No 100
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=53.25 E-value=82 Score=24.87 Aligned_cols=114 Identities=8% Similarity=0.033 Sum_probs=62.6
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEE---eccccchhhc
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLV---QGWVPQAKIL 238 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~p~~~ll 238 (333)
.+++.-.|++... ....+++.|.+.|..+-...+.... .-+.....+.+ .. .+.. ..|+++.++-
T Consensus 7 ~IllgvTGs~aa~---k~~~ll~~L~~~g~~V~vv~T~~A~------~fi~~~~l~~l--~~-~v~~~~~~~~~~hi~l~ 74 (175)
T 3qjg_A 7 NVLICLCGSVNSI---NISHYIIELKSKFDEVNVIASTNGR------KFINGEILKQF--CD-NYYDEFEDPFLNHVDIA 74 (175)
T ss_dssp EEEEEECSSGGGG---GHHHHHHHHTTTCSEEEEEECTGGG------GGSCHHHHHHH--CS-CEECTTTCTTCCHHHHH
T ss_pred EEEEEEeCHHHHH---HHHHHHHHHHHCCCEEEEEECcCHH------HHhhHHHHHHh--cC-CEEecCCCCcccccccc
Confidence 3666666666543 2456677787778877666664321 11222222222 11 2221 1234455555
Q ss_pred cccccceeEeecCchhHHH-------------HHHhCcceeccccc-------cchhhHHHHHhHhCeee
Q 044441 239 RHGRIGGFLSHCGWGSAVE-------------GMVFGVPIIAMPMV-------YEQSRNAKVVVDIGMGM 288 (333)
Q Consensus 239 ~~~~~~~~I~hgG~~s~~e-------------al~~GvP~i~~P~~-------~DQ~~na~~~~~~G~g~ 288 (333)
..++ ..+|.-|-+||+.. ++..++|++++|-. .=...|...+.+.|+=+
T Consensus 75 ~~aD-~~vVaPaTanTlakiA~GiaDnLlt~~~la~~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~G~~i 143 (175)
T 3qjg_A 75 NKHD-KIIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFPNMNLRMWENPVTQNNIRLLKDYGVSI 143 (175)
T ss_dssp HTCS-EEEEEEECHHHHHHHHTTCCCSHHHHHHHTCGGGEEEEECEEHHHHTCHHHHHHHHHHHHTTCEE
T ss_pred chhC-EEEEeeCCHHHHHHHHccccCCHHHHHHHHcCCCEEEEecCChhhhcCHHHHHHHHHHHHCCCEE
Confidence 5555 34666676665543 36678999999942 22345777888877643
No 101
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=52.94 E-value=21 Score=26.00 Aligned_cols=42 Identities=12% Similarity=0.216 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCCCEEEEcCCch---hHHHHHHH----cCCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP---WAAEAAYQ----YHIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~---~~~~~A~~----lgiP~v~~~~~~ 47 (333)
.+..+.+++.+||+||.|...+ .+..+++. .++|+|.++...
T Consensus 44 ~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~ 92 (140)
T 3cg0_A 44 EEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQ 92 (140)
T ss_dssp HHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCC
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 4556667777899999994432 34444444 378998887653
No 102
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=52.56 E-value=23 Score=25.30 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=27.3
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-----CCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-----HIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 47 (333)
.+..+.++..+||++|.|...+ .+..+++.+ ++|.|.++...
T Consensus 37 ~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (126)
T 1dbw_A 37 EAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHG 85 (126)
T ss_dssp HHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTT
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCC
Confidence 3455566777899999995433 355454443 57888876553
No 103
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=51.88 E-value=81 Score=25.84 Aligned_cols=101 Identities=12% Similarity=0.058 Sum_probs=52.1
Q ss_pred HHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEe
Q 044441 150 KIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQ 229 (333)
Q Consensus 150 ~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 229 (333)
++-.+|.... ..+|+.|... ..+....++..+.+-.++=++...... ..++.. ......+.
T Consensus 36 ~lg~~LA~~G---~~vVsGGg~~----GiM~aa~~gAl~~GG~tiGVlP~~~~~-----~e~~~~-------~~~~~~~~ 96 (215)
T 2a33_A 36 DLGNELVSRN---IDLVYGGGSI----GLMGLVSQAVHDGGRHVIGIIPKTLMP-----RELTGE-------TVGEVRAV 96 (215)
T ss_dssp HHHHHHHHTT---CEEEECCCSS----HHHHHHHHHHHHTTCCEEEEEESSCC--------------------CCEEEEE
T ss_pred HHHHHHHHCC---CEEEECCChh----hHhHHHHHHHHHcCCcEEEEcchHhcc-----hhhccC-------CCCceeec
Confidence 4455555542 5666666531 255566666655555555554422110 001100 01123344
Q ss_pred ccccch-hh-ccccccceeEeecCchhHHHHHH---------hCcceecccc
Q 044441 230 GWVPQA-KI-LRHGRIGGFLSHCGWGSAVEGMV---------FGVPIIAMPM 270 (333)
Q Consensus 230 ~~~p~~-~l-l~~~~~~~~I~hgG~~s~~eal~---------~GvP~i~~P~ 270 (333)
...+.. .+ ...++ ..++--||.||+-|... +++|++.+-.
T Consensus 97 ~~f~~Rk~~~~~~sd-a~VvlpGG~GTLdElfE~lt~~qlg~~~kPvvll~~ 147 (215)
T 2a33_A 97 ADMHQRKAEMAKHSD-AFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 147 (215)
T ss_dssp SSHHHHHHHHHHTCS-EEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECG
T ss_pred CCHHHHHHHHHHhCC-EEEEeCCCCchHHHHHHHHHHHHhCCCCCCeEEecC
Confidence 555554 33 33444 45677899999988762 4899998854
No 104
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=51.73 E-value=25 Score=25.71 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-------CCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-------HIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-------giP~v~~~~~ 46 (333)
.+..+.++..+||+||.|...+ .|..+++.+ .+|.|.++..
T Consensus 37 ~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 37 EECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESS
T ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECC
Confidence 3455566777899999995433 355555443 5788887654
No 105
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=51.64 E-value=14 Score=33.34 Aligned_cols=45 Identities=13% Similarity=-0.022 Sum_probs=26.3
Q ss_pred HHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEE
Q 044441 150 KIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRV 196 (333)
Q Consensus 150 ~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~ 196 (333)
++.+++.....+++++|+-++.. .....+.+.+.|++.+..+.+.
T Consensus 21 ~l~~~~~~~g~~~~liVtd~~~~--~~g~~~~v~~~L~~~gi~~~~~ 65 (383)
T 3ox4_A 21 KAIKDLNGSGFKNALIVSDAFMN--KSGVVKQVADLLKAQGINSAVY 65 (383)
T ss_dssp HHHHTTTTSCCCEEEEEEEHHHH--HTTHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECCchh--hCchHHHHHHHHHHcCCeEEEE
Confidence 45555555443446666655432 1225677888888888776443
No 106
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=51.23 E-value=26 Score=24.57 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=27.3
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-----CCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-----HIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 47 (333)
.+..+.+++.+||+||.|...+ .+..+++.+ ++|.+.++...
T Consensus 37 ~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (120)
T 1tmy_A 37 REAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMG 85 (120)
T ss_dssp HHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTT
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCC
Confidence 3455566777899999995433 355455443 58888876554
No 107
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=50.60 E-value=31 Score=23.97 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-----CCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-----HIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-----giP~v~~~~~ 46 (333)
.+..+.++..+||++|.|...+ .+..+.+.+ .+|.+.++..
T Consensus 35 ~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 35 EEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 3455566777899999995432 344444432 5788877654
No 108
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=50.32 E-value=33 Score=30.32 Aligned_cols=35 Identities=11% Similarity=0.018 Sum_probs=24.8
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEe
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLR 198 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~ 198 (333)
.+++++.|+.+. ...+..++++|.+.|+.+.+.++
T Consensus 6 ~il~~~~~~~Gh--v~~~~~La~~L~~~GheV~v~~~ 40 (402)
T 3ia7_A 6 HILFANVQGHGH--VYPSLGLVSELARRGHRITYVTT 40 (402)
T ss_dssp EEEEECCSSHHH--HHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEEeCCCCcc--cccHHHHHHHHHhCCCEEEEEcC
Confidence 377777776542 34456788888888998888765
No 109
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=50.25 E-value=25 Score=26.22 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-----CCCeEEEechhH
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-----HIAAVLFLTISA 48 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-----giP~v~~~~~~~ 48 (333)
.+..+.+++.+||+||.|...+ .+..+.+.+ .+|+|.++....
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 90 (154)
T 2rjn_A 41 LDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYAD 90 (154)
T ss_dssp HHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGG
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 4556677778899999995432 344444332 688888876543
No 110
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=50.06 E-value=11 Score=31.91 Aligned_cols=38 Identities=26% Similarity=0.263 Sum_probs=24.8
Q ss_pred HHHHhhcCCCEEEEc----------CC---chhHHHHHHHcCCCeEEEech
Q 044441 9 CNILETLKPTLVMYD----------LF---QPWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 9 ~~~l~~~~pD~vv~D----------~~---~~~~~~~A~~lgiP~v~~~~~ 46 (333)
..++.+.+||+||+- .+ +.+|+.-|..+|||.|.++..
T Consensus 78 ~~l~~~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~ 128 (251)
T 2phj_A 78 RVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAF 128 (251)
T ss_dssp HTTTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHhcCCCCCCEEEECCcCCCcCCCCCccchHHHHHHHHHHcCCCeEEEEcC
Confidence 344544689999974 11 223444556789999999853
No 111
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=49.98 E-value=26 Score=26.25 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=27.0
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHH-------cCCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQ-------YHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~-------lgiP~v~~~~~ 46 (333)
.+..+.+++.+||+||.|...+ .+..+++. -.+|.|.++..
T Consensus 41 ~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 41 REAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp HHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECC
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECC
Confidence 4556677788999999995422 34444433 35788887654
No 112
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=49.64 E-value=8.8 Score=30.06 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=32.3
Q ss_pred cchHHHHHHHhhcCCCEEEEc-CCc-h-------------hHHHHHHHcCCCeEEEechh
Q 044441 3 DAKPAFCNILETLKPTLVMYD-LFQ-P-------------WAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 3 ~~~~~l~~~l~~~~pD~vv~D-~~~-~-------------~~~~~A~~lgiP~v~~~~~~ 47 (333)
.+...+.+++++++||.+..+ .|+ - ....++...|+|+..+.+..
T Consensus 46 ~i~~~l~~~i~~~~Pd~vaiE~vf~~~n~~s~~~lgqarGv~~~a~~~~~ipv~eytp~~ 105 (158)
T 1hjr_A 46 LIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQ 105 (158)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeecccccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 356778899999999999998 331 1 12455677889988887654
No 113
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=49.54 E-value=16 Score=34.53 Aligned_cols=37 Identities=8% Similarity=0.026 Sum_probs=28.4
Q ss_pred hHHHHHHHhhcCCCEEEEcCCchhHHHHHHHc-------CCCeEEEe
Q 044441 5 KPAFCNILETLKPTLVMYDLFQPWAAEAAYQY-------HIAAVLFL 44 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~l-------giP~v~~~ 44 (333)
..++.+.+++.+||++|.... +..+|+++ |||++.++
T Consensus 427 ~~~l~~~i~~~~pDLlig~s~---~k~~a~~~~~~~~~~giP~irig 470 (523)
T 3u7q_B 427 LWHLRSLVFTDKPDFMIGNSY---GKFIQRDTLHKGKEFEVPLIRIG 470 (523)
T ss_dssp HHHHHHHHHHTCCSEEEECTT---HHHHHHHHHHHCGGGCCCEEECS
T ss_pred HHHHHHHHHhcCCCEEEECcc---HHHHHHHhhcccccCCCceEEec
Confidence 346777888889999999954 44577777 99998754
No 114
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=49.22 E-value=99 Score=24.62 Aligned_cols=139 Identities=13% Similarity=0.151 Sum_probs=73.7
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhcccc
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRHG 241 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~~ 241 (333)
+.|-|-+||.. +....+++...|+..|..+-..+... +..|+.+.+ |..+. ...
T Consensus 22 ~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~Sa--------HR~p~~l~~-------------~~~~a---~~~ 75 (182)
T 1u11_A 22 PVVGIIMGSQS--DWETMRHADALLTELEIPHETLIVSA--------HRTPDRLAD-------------YARTA---AER 75 (182)
T ss_dssp CSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT--------TTCHHHHHH-------------HHHHT---TTT
T ss_pred CEEEEEECcHH--HHHHHHHHHHHHHHcCCCeEEEEEcc--------cCCHHHHHH-------------HHHHH---HhC
Confidence 35666667654 57788889999999888764444322 234443221 11111 111
Q ss_pred ccceeEeecCch----hHHHHHHhCcceeccccccc--h-hhHHHHHhH--hCeeeEee-cCccCCCcCHHHHHHHHHHH
Q 044441 242 RIGGFLSHCGWG----SAVEGMVFGVPIIAMPMVYE--Q-SRNAKVVVD--IGMGMDVP-RDKINQRLRREEVARVIKHV 311 (333)
Q Consensus 242 ~~~~~I~hgG~~----s~~eal~~GvP~i~~P~~~D--Q-~~na~~~~~--~G~g~~l~-~~~~~~~~~~~~l~~ai~~v 311 (333)
.+++||.-+|.- ++..++ .-+|+|.+|.... . .+-..-+.+ .|+.+..- -++ .+..++.-++..|..
T Consensus 76 g~~ViIa~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~I~~-a~~~nAallAaqIla- 152 (182)
T 1u11_A 76 GLNVIIAGAGGAAHLPGMCAAW-TRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA-SGAKNAALLAASILA- 152 (182)
T ss_dssp TCCEEEEEEESSCCHHHHHHHH-CSSCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSH-HHHHHHHHHHHHHHG-
T ss_pred CCcEEEEecCchhhhHHHHHhc-cCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCceEEEecCC-ccchHHHHHHHHHHc-
Confidence 233477766643 444443 4789999998542 1 222233455 46664221 000 022344555544432
Q ss_pred hcCcchHHHHHHHHHHHHHhh
Q 044441 312 LLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 312 l~~~~~~~~~~~a~~l~~~~~ 332 (333)
+. ++.++++.+..++.++
T Consensus 153 ~~---d~~l~~kL~~~r~~~~ 170 (182)
T 1u11_A 153 LY---NPALAARLETWRALQT 170 (182)
T ss_dssp GG---CHHHHHHHHHHHHHHH
T ss_pred cC---CHHHHHHHHHHHHHHH
Confidence 23 5788888888877654
No 115
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=49.09 E-value=15 Score=34.91 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=28.8
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEE
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLF 43 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~ 43 (333)
.++.+++++.+||++|.. .....+|+++|||++.+
T Consensus 446 ~el~~~i~~~~pDl~ig~---~~~~~~a~k~gIP~~~~ 480 (533)
T 1mio_A 446 HDMEVVLEKLKPDMFFAG---IKEKFVIQKGGVLSKQL 480 (533)
T ss_dssp HHHHHHHHHHCCSEEEEC---HHHHHHHHHTTCEEEET
T ss_pred HHHHHHHHhcCCCEEEcc---cchhHHHHhcCCCEEEe
Confidence 357788888999999987 44678999999999854
No 116
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=48.34 E-value=18 Score=28.56 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=32.9
Q ss_pred cchHHHHHHHhhcCCCEEEEcCCch-----h----------HHHHHHHcCCCeEEEechh
Q 044441 3 DAKPAFCNILETLKPTLVMYDLFQP-----W----------AAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 3 ~~~~~l~~~l~~~~pD~vv~D~~~~-----~----------~~~~A~~lgiP~v~~~~~~ 47 (333)
.+.+.+.+++++++||.+..+..++ . +..++.+.|+|+..+.+..
T Consensus 50 ~I~~~l~~~i~~~~Pd~vaiE~~F~~~n~~sal~lgqarGv~~la~~~~glpv~eytP~~ 109 (166)
T 4ep4_A 50 RIHARVLEVLHRFRPEAVAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQ 109 (166)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCCSSCSHHHHHHHHHHHHHHHHHHHHTCCEEEECHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEeehhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 3567889999999999999983221 1 2355677899998887654
No 117
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=47.81 E-value=25 Score=25.51 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCCEEEEcCCch-------hHHHHHHH-----cCCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP-------WAAEAAYQ-----YHIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~-------~~~~~A~~-----lgiP~v~~~~~~ 47 (333)
.+..+.+++.+||+||.|...+ .+..+.+. -++|+|.++...
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 90 (140)
T 2qr3_A 37 VSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYA 90 (140)
T ss_dssp HHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGG
T ss_pred HHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCC
Confidence 4556677778899999995433 34444433 268988887654
No 118
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=47.33 E-value=33 Score=23.91 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHH----cCCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQ----YHIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~----lgiP~v~~~~~~ 47 (333)
.+..+.++..+||++|.|...+ .+..+++. -.+|.+.++...
T Consensus 35 ~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 35 REALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp HHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCC
T ss_pred HHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 3444556677899999995432 34444443 368888876543
No 119
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=47.29 E-value=19 Score=31.52 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=24.1
Q ss_pred HHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEec
Q 044441 11 ILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 11 ~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 45 (333)
.|...+||+||......-...-.++.|||++.+..
T Consensus 111 ~i~al~PDLIi~~~~~~~~~~~L~~~gipvv~~~~ 145 (335)
T 4hn9_A 111 ACVAATPDVVFLPMKLKKTADTLESLGIKAVVVNP 145 (335)
T ss_dssp HHHHTCCSEEEEEGGGHHHHHHHHHTTCCEEEECC
T ss_pred HHHhcCCCEEEEeCcchhHHHHHHHcCCCEEEEcC
Confidence 34457999999874433334445678999999854
No 120
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=47.11 E-value=29 Score=29.02 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=29.3
Q ss_pred HHHHHHHhhc--CCCEEEEcCC-------chhHHHHHHHcCCCeEEEech
Q 044441 6 PAFCNILETL--KPTLVMYDLF-------QPWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~--~pD~vv~D~~-------~~~~~~~A~~lgiP~v~~~~~ 46 (333)
|.+.+.+++. +||++++|.+ +-.|..+.-.+++|+|.+.=.
T Consensus 95 P~ll~al~~L~~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVAKs 144 (237)
T 3goc_A 95 PTVLAALDALPCPPGLIVCDGYGVAHPRRFGLASHLGVLTGLPTIGVAKN 144 (237)
T ss_dssp HHHHHHHHTSSSCCSEEEEESCSSCSTTSCCHHHHHHHHHCSCEEEEESS
T ss_pred HHHHHHHHhcCCCCCEEEEeCceeecCCCcchhheeeeecCCCEEeeecc
Confidence 4556666654 6999999954 344667777889999997643
No 121
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=47.03 E-value=22 Score=31.54 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=19.9
Q ss_pred ccccceeEee-cCchhHHHHHHhCcceecccc
Q 044441 240 HGRIGGFLSH-CGWGSAVEGMVFGVPIIAMPM 270 (333)
Q Consensus 240 ~~~~~~~I~h-gG~~s~~eal~~GvP~i~~P~ 270 (333)
.+++ +|++ .+.....-|-..|+|.+.+-.
T Consensus 114 ~PD~--Vv~~~~~~~~~~aa~~~giP~v~~~~ 143 (391)
T 3tsa_A 114 RPSV--LLVDVCALIGRVLGGLLDLPVVLHRW 143 (391)
T ss_dssp CCSE--EEEETTCHHHHHHHHHTTCCEEEECC
T ss_pred CCCE--EEeCcchhHHHHHHHHhCCCEEEEec
Confidence 4554 7777 445556667789999988743
No 122
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=46.94 E-value=37 Score=24.30 Aligned_cols=41 Identities=10% Similarity=-0.008 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHH---Hc----CCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAY---QY----HIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~---~l----giP~v~~~~~ 46 (333)
.+..+.+++.+||+||.|...+ .+..+.+ .. ++|.|.++..
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 37 ASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp HHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESC
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCC
Confidence 4555667778999999995422 3444433 22 6888887654
No 123
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=46.47 E-value=30 Score=25.02 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=26.6
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-----CCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-----HIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-----giP~v~~~~~ 46 (333)
.+..+.+++.+||+||.|...+ .|..+++.+ .+|.|.++..
T Consensus 39 ~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~ 86 (133)
T 3b2n_A 39 LDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTF 86 (133)
T ss_dssp HHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecC
Confidence 3455666777899999995433 355454443 5788887654
No 124
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=46.34 E-value=32 Score=24.17 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=27.0
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc----CCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY----HIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l----giP~v~~~~~~ 47 (333)
.+..+.++..+||++|.|...+ .+..+++.+ .+|.|.++...
T Consensus 36 ~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 36 AGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSC
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCC
Confidence 4455667777899999995432 355555543 57777776543
No 125
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=46.29 E-value=32 Score=25.02 Aligned_cols=41 Identities=12% Similarity=0.047 Sum_probs=26.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCchh--HHHHHHHc-----CCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQPW--AAEAAYQY-----HIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~--~~~~A~~l-----giP~v~~~~~~ 47 (333)
.+..+.++..+||+||.|. .+. +..+.+.+ ++|+|.++...
T Consensus 38 ~~a~~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~ 85 (142)
T 2qxy_A 38 QEAFTFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYV 85 (142)
T ss_dssp HHHHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred HHHHHHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCC
Confidence 4556667778999999997 432 33334332 58888876543
No 126
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=45.88 E-value=35 Score=24.77 Aligned_cols=42 Identities=10% Similarity=-0.070 Sum_probs=27.5
Q ss_pred HHHHHHHhhcCCCEEEEcCCc--hhHHHHHHH-------cCCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQ--PWAAEAAYQ-------YHIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~--~~~~~~A~~-------lgiP~v~~~~~~ 47 (333)
.+..+.++..+||+||.|... ..+..+++. -++|.|.++...
T Consensus 40 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 40 AQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANA 90 (140)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 455667778899999999542 234444433 257888877654
No 127
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=45.32 E-value=48 Score=22.41 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=34.5
Q ss_pred HhCcceeccccccchhhHHHH---HhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 260 VFGVPIIAMPMVYEQSRNAKV---VVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 260 ~~GvP~i~~P~~~DQ~~na~~---~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
-.|+|++++--.+.|.+--.. ..+.|+...+. ....+|++...+++.|.
T Consensus 49 dngkplvvfvngasqndvnefqneakkegvsydvl-----kstdpeeltqrvreflk 100 (112)
T 2lnd_A 49 DNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVL-----KSTDPEELTQRVREFLK 100 (112)
T ss_dssp TCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEE-----ECCCHHHHHHHHHHHHH
T ss_pred hcCCeEEEEecCcccccHHHHHHHHHhcCcchhhh-----ccCCHHHHHHHHHHHHH
Confidence 368888888766666553322 33448887775 45689999999999885
No 128
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=45.25 E-value=37 Score=23.89 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHH----cCCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQ----YHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~----lgiP~v~~~~~ 46 (333)
.+..+.++..+||++|.|...+ .+..+++. -.+|.+.++..
T Consensus 37 ~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~ 83 (123)
T 1xhf_A 37 AEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGR 83 (123)
T ss_dssp HHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESC
T ss_pred HHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECC
Confidence 3455566777899999995433 34444444 35787777654
No 129
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=44.96 E-value=34 Score=25.30 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=27.9
Q ss_pred hHHHHHHHhhcCCCEEEEcCCc--hhHHHHHHH-----cCCCeEEEechh
Q 044441 5 KPAFCNILETLKPTLVMYDLFQ--PWAAEAAYQ-----YHIAAVLFLTIS 47 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~--~~~~~~A~~-----lgiP~v~~~~~~ 47 (333)
..+..+.+++.+||+||.|... ..+..+++. -++|+|.++...
T Consensus 55 ~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 55 GQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFK 104 (150)
T ss_dssp HHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 3456667788899999999542 234444443 257888776543
No 130
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=44.95 E-value=25 Score=29.20 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=24.0
Q ss_pred HHHhhcCCCEEEEcCCch--hHHHHHHHcCCCeEEEe
Q 044441 10 NILETLKPTLVMYDLFQP--WAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 10 ~~l~~~~pD~vv~D~~~~--~~~~~A~~lgiP~v~~~ 44 (333)
+.|...+||+||...... -...-.++.|||++.+.
T Consensus 53 E~i~~l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~~ 89 (255)
T 3md9_A 53 EGILAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVP 89 (255)
T ss_dssp HHHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEEC
T ss_pred HHHHccCCCEEEEcCCcCchhHHHHHHHcCCcEEEeC
Confidence 344457999999885432 23444567899999875
No 131
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=44.91 E-value=30 Score=25.19 Aligned_cols=41 Identities=10% Similarity=-0.002 Sum_probs=26.8
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc----CCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY----HIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l----giP~v~~~~~ 46 (333)
.+..+.++..+||+||.|...+ .+..+++.+ .+|.|.++..
T Consensus 38 ~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~ 84 (136)
T 2qzj_A 38 EEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYI 84 (136)
T ss_dssp HHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcC
Confidence 3455666777899999995433 355555443 5788877654
No 132
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=44.56 E-value=35 Score=24.55 Aligned_cols=41 Identities=10% Similarity=0.016 Sum_probs=26.0
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHH-----cCCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQ-----YHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~-----lgiP~v~~~~~ 46 (333)
.+..+.++..+||+||.|...+ .+..+.+. -++|.|.++..
T Consensus 37 ~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (132)
T 3crn_A 37 GEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGY 84 (132)
T ss_dssp HHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESC
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEecc
Confidence 3445566777899999995432 34444433 25788877654
No 133
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=44.28 E-value=38 Score=24.11 Aligned_cols=42 Identities=14% Similarity=0.010 Sum_probs=26.6
Q ss_pred HHHHHHHhhc-CCCEEEEcCCc---hhHHHHHHHc-----CCCeEEEechh
Q 044441 6 PAFCNILETL-KPTLVMYDLFQ---PWAAEAAYQY-----HIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~-~pD~vv~D~~~---~~~~~~A~~l-----giP~v~~~~~~ 47 (333)
.+..+.+++. +||+||.|... ..+..+++.+ ++|.|.++...
T Consensus 39 ~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 39 AKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp HHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred HHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCc
Confidence 4455666666 89999999543 2344444433 58888876543
No 134
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=44.14 E-value=48 Score=24.16 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=27.0
Q ss_pred hHHHHHHHhhcCCCEEEEcCCch--hHHHHHHH-------cCCCeEEEech
Q 044441 5 KPAFCNILETLKPTLVMYDLFQP--WAAEAAYQ-------YHIAAVLFLTI 46 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~-------lgiP~v~~~~~ 46 (333)
..+..+.+++.+||+||.|...+ .+..+.+. -++|.|.++..
T Consensus 40 ~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 40 GAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp HHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETT
T ss_pred HHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCC
Confidence 34556667778999999995433 24444432 25788887754
No 135
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=44.06 E-value=32 Score=24.35 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-----CCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-----HIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-----giP~v~~~~~ 46 (333)
.+..+.++..+||++|.|...+ .+..+++.+ .+|.|.++..
T Consensus 37 ~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1srr_A 37 LQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAY 84 (124)
T ss_dssp HHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEcc
Confidence 3445556677899999995433 344444433 5788887654
No 136
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=44.05 E-value=34 Score=28.43 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=28.2
Q ss_pred HHHHHHHhhc--CCCEEEEcCCchh-------HHHHHHHcCCCeEEEech
Q 044441 6 PAFCNILETL--KPTLVMYDLFQPW-------AAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~--~pD~vv~D~~~~~-------~~~~A~~lgiP~v~~~~~ 46 (333)
|.+.+.+++. +||++++|..... |..+...+++|+|.+.=.
T Consensus 91 P~~l~al~~L~~~PdlllvDG~Gi~HpR~~GlA~HlGv~l~~PtIGVAK~ 140 (225)
T 2w36_A 91 PLFLKAWEKLRTKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAKS 140 (225)
T ss_dssp HHHHHHHTTCCSCCSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEESS
T ss_pred HHHHHHHHhcCCCCCEEEEeCeEEEcCCCCCchhhhhhhhCCCEEEEEec
Confidence 4455556654 6999999955333 555667779999997644
No 137
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=44.05 E-value=12 Score=32.09 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=36.7
Q ss_pred ccceeEeecCchhHHHHHHh------CcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 242 RIGGFLSHCGWGSAVEGMVF------GVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 242 ~~~~~I~hgG~~s~~eal~~------GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
.++++|+-||=||+++++.. ++|++++|... +|. + ..+.++++.++++++++
T Consensus 35 ~~D~vv~lGGDGT~l~aa~~~~~~~~~~PilGIn~G~-------------lgf-l------~~~~~~~~~~~l~~l~~ 92 (272)
T 2i2c_A 35 EPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGH-------------LGF-Y------ADWRPAEADKLVKLLAK 92 (272)
T ss_dssp SCSEEEEEESHHHHHHHHHHTGGGTTTCEEEEEESSS-------------CCS-S------CCBCGGGHHHHHHHHHT
T ss_pred CCCEEEEEcCcHHHHHHHHHHhhcCCCCCEEEEeCCC-------------CCc-C------CcCCHHHHHHHHHHHHc
Confidence 34559999999999999754 88999997510 121 1 23457778888888776
No 138
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=43.67 E-value=94 Score=22.80 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=33.8
Q ss_pred hCcceeccccccchhhHHHHHhHhC-eeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHHHHH
Q 044441 261 FGVPIIAMPMVYEQSRNAKVVVDIG-MGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRK 323 (333)
Q Consensus 261 ~GvP~i~~P~~~DQ~~na~~~~~~G-~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~ 323 (333)
..+|+|++--..+ ........+.| +--.+. +.++.+++..+|++++. ...+++.
T Consensus 78 ~~~~ii~ls~~~~-~~~~~~~~~~g~~~~~l~-----kP~~~~~L~~~i~~~~~---~~~~~~~ 132 (154)
T 2rjn_A 78 PDIERVVISGYAD-AQATIDAVNRGKISRFLL-----KPWEDEDVFKVVEKGLQ---LAFLREE 132 (154)
T ss_dssp TTSEEEEEECGGG-HHHHHHHHHTTCCSEEEE-----SSCCHHHHHHHHHHHHH---HHHHHHH
T ss_pred CCCcEEEEecCCC-HHHHHHHHhccchheeee-----CCCCHHHHHHHHHHHHH---HHHHHHH
Confidence 3678777743333 33444455555 645553 45799999999999997 4444433
No 139
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=42.86 E-value=35 Score=24.83 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-----CCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-----HIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-----giP~v~~~~~ 46 (333)
.+..+.++..+||+||.|...+ .+..+++.+ .+|.|.++..
T Consensus 38 ~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 38 RDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp HHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESS
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEec
Confidence 3455666777999999995433 355454443 4777777654
No 140
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=42.56 E-value=37 Score=23.85 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=24.2
Q ss_pred HHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-------CCCeEEEech
Q 044441 7 AFCNILETLKPTLVMYDLFQP--WAAEAAYQY-------HIAAVLFLTI 46 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-------giP~v~~~~~ 46 (333)
+..+.++..+||++|.|...+ .+..+++.+ .+|.+.++..
T Consensus 36 ~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 84 (124)
T 1mb3_A 36 SALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAF 84 (124)
T ss_dssp HHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC--
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECC
Confidence 444556677899999995432 345444432 5788877644
No 141
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=42.16 E-value=65 Score=28.78 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=26.1
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEec
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRL 199 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 199 (333)
+++++.||.+ .-.-+..+..+|.+.|..+.+.++.
T Consensus 3 Ili~~~gt~G--hv~p~~~La~~L~~~Gh~V~v~~~~ 37 (404)
T 3h4t_A 3 VLITGCGSRG--DTEPLVALAARLRELGADARMCLPP 37 (404)
T ss_dssp EEEEEESSHH--HHHHHHHHHHHHHHTTCCEEEEECG
T ss_pred EEEEeCCCCc--cHHHHHHHHHHHHHCCCeEEEEeCH
Confidence 7788888864 2334566888899999999887764
No 142
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=41.42 E-value=52 Score=22.91 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHH-----cCCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQ-----YHIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 47 (333)
.+..+.++..+||++|.|...+ .+..+.+. -.+|.|.++...
T Consensus 34 ~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 82 (121)
T 2pl1_A 34 KEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARE 82 (121)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCC
T ss_pred HHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCC
Confidence 3455566777899999995432 34444443 257888876543
No 143
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=41.36 E-value=1.2e+02 Score=24.44 Aligned_cols=138 Identities=10% Similarity=-0.029 Sum_probs=72.9
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEecc-----ccchh
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGW-----VPQAK 236 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~p~~~ 236 (333)
.+++.-.|++... ....+++.|.+.|..+-...+.... .-+...-.+. ...++...-| +.+.+
T Consensus 10 ~IllgvTGs~aa~---k~~~l~~~L~~~g~~V~vv~T~~A~------~fi~~~~~~~---l~~~v~~~~~~~~~~~~hi~ 77 (194)
T 1p3y_1 10 KLLIGICGSISSV---GISSYLLYFKSFFKEIRVVMTKTAE------DLIPAHTVSY---FCDHVYSEHGENGKRHSHVE 77 (194)
T ss_dssp EEEEEECSCGGGG---GTHHHHHHHTTTSSEEEEEECHHHH------HHSCHHHHGG---GSSEEECTTCSSSCCCCHHH
T ss_pred EEEEEEECHHHHH---HHHHHHHHHHHCCCEEEEEEchhHH------HHHHHHHHHH---hcCCEeccccccCCCcCccc
Confidence 3666556665542 2345566666677776555553211 1111111111 2333222112 22334
Q ss_pred hccccccceeEeecCchhHHHH-------------HHhCcceecccccc----c---hhhHHHHHhHhCeeeEeecCcc-
Q 044441 237 ILRHGRIGGFLSHCGWGSAVEG-------------MVFGVPIIAMPMVY----E---QSRNAKVVVDIGMGMDVPRDKI- 295 (333)
Q Consensus 237 ll~~~~~~~~I~hgG~~s~~ea-------------l~~GvP~i~~P~~~----D---Q~~na~~~~~~G~g~~l~~~~~- 295 (333)
+...++ ..+|.-|-+||+... +..++|++++|-.. . ...|...+.+.|+= .+....+
T Consensus 78 l~~~aD-~~vIaPaTanTlAKiA~GiaDnLlt~~a~a~~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~G~~-iv~p~~g~ 155 (194)
T 1p3y_1 78 IGRWAD-IYCIIPATANILGQTANGVAMNLVATTVLAHPHNTIFFPNMNDLMWNKTVVSRNIEQLRKDGHI-VIEPVEIM 155 (194)
T ss_dssp HHHHCS-EEEEEEECHHHHHHHHTTCCSSHHHHHHHHSSSCCEEEECCCHHHHTCHHHHHHHHHHHHHTCE-ECCCBCCC
T ss_pred ccccCC-EEEEeCCCHHHHHHHHhhccCCHHHHHHHHcCCCEEEEECCChhhcCCHHHHHHHHHHHHCCCE-EECCCCCc
Confidence 444455 246777766655432 56789999999532 2 24577788888873 3333221
Q ss_pred ------------CCCcCHHHHHHHHHHHhc
Q 044441 296 ------------NQRLRREEVARVIKHVLL 313 (333)
Q Consensus 296 ------------~~~~~~~~l~~ai~~vl~ 313 (333)
..-.+.++|.+.+.+.+.
T Consensus 156 ~f~lacg~~g~~g~~~~~~~iv~~v~~~l~ 185 (194)
T 1p3y_1 156 AFEIATGTRKPNRGLITPDKALLAIEKGFK 185 (194)
T ss_dssp ------------CBCCCHHHHHHHHHHHCC
T ss_pred ccccccCCcCcCCCCCCHHHHHHHHHHHhc
Confidence 122468888888888886
No 144
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=40.87 E-value=31 Score=28.59 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=26.5
Q ss_pred HHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEec
Q 044441 11 ILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 11 ~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~ 45 (333)
-+++...|+||.| ..+..+|+++|+|.+.+.+
T Consensus 149 ~l~~~G~~vVVG~---~~~~~~A~~~Gl~~vlI~s 180 (225)
T 2pju_A 149 ELKANGTEAVVGA---GLITDLAEEAGMTGIFIYS 180 (225)
T ss_dssp HHHHTTCCEEEES---HHHHHHHHHTTSEEEESSC
T ss_pred HHHHCCCCEEECC---HHHHHHHHHcCCcEEEECC
Confidence 3445689999999 5568899999999999884
No 145
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=40.66 E-value=37 Score=24.60 Aligned_cols=39 Identities=8% Similarity=-0.093 Sum_probs=25.9
Q ss_pred HHHHHHHhh-cCCCEEEEcCCch--hHHHHHHHc-----CCCeEEEe
Q 044441 6 PAFCNILET-LKPTLVMYDLFQP--WAAEAAYQY-----HIAAVLFL 44 (333)
Q Consensus 6 ~~l~~~l~~-~~pD~vv~D~~~~--~~~~~A~~l-----giP~v~~~ 44 (333)
.+..+.++. .+||++|.|...+ .+..+.+.+ ++|.|.++
T Consensus 49 ~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 49 SAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 344556677 7899999995433 455555554 57877776
No 146
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=40.56 E-value=40 Score=24.66 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-----CCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-----HIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-----giP~v~~~~~ 46 (333)
.+..+.++..+||+||.|...+ .|..+++.+ ++|.|.++..
T Consensus 39 ~~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~ 86 (141)
T 3cu5_A 39 INAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGY 86 (141)
T ss_dssp HHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCS
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCC
Confidence 3445566777899999995432 355555443 5777776543
No 147
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=40.49 E-value=41 Score=23.85 Aligned_cols=41 Identities=15% Similarity=-0.067 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCCCEEEEcCCc--hhHHHHHHH-------cCCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQ--PWAAEAAYQ-------YHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~--~~~~~~A~~-------lgiP~v~~~~~ 46 (333)
.+..+.+++.+||+||.|... ..+..+++. -++|.|.++..
T Consensus 37 ~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 37 TDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp HHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECC
Confidence 455566777899999999432 334444433 24777776643
No 148
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=40.48 E-value=50 Score=24.38 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=27.1
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHH-----cCCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQ-----YHIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 47 (333)
.+..+.+++.+||+||.|...+ .+..+++. -++|+|.++...
T Consensus 41 ~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 41 GEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp HHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCC
Confidence 4556667778899999995432 34444433 258888876543
No 149
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=40.44 E-value=1.9e+02 Score=26.33 Aligned_cols=136 Identities=13% Similarity=0.038 Sum_probs=68.7
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhccc
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILRH 240 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~~ 240 (333)
.+.|-|-+||.. .....+++...|+..|..+-..+.+. +.+|+...+ |..+.. -..
T Consensus 265 ~~~V~Ii~gs~S--D~~~~~~a~~~l~~~gi~~~v~V~sa--------HR~p~~~~~-------------~~~~~~-~~g 320 (425)
T 2h31_A 265 QCRVVVLMGSTS--DLGHCEKIKKACGNFGIPCELRVTSA--------HKGPDETLR-------------IKAEYE-GDG 320 (425)
T ss_dssp CCEEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCT--------TTCHHHHHH-------------HHHHHH-TTC
T ss_pred CCeEEEEecCcc--cHHHHHHHHHHHHHcCCceEEeeeec--------cCCHHHHHH-------------HHHHHH-HCC
Confidence 356777777765 56788888899999888754443321 234443221 111111 011
Q ss_pred cccceeEeecCch----hHHHHHHhCcceecccccc-chhhH-HHHHhH--hCeeeEeecCccCCCcCHHHHHHHHHHHh
Q 044441 241 GRIGGFLSHCGWG----SAVEGMVFGVPIIAMPMVY-EQSRN-AKVVVD--IGMGMDVPRDKINQRLRREEVARVIKHVL 312 (333)
Q Consensus 241 ~~~~~~I~hgG~~----s~~eal~~GvP~i~~P~~~-DQ~~n-a~~~~~--~G~g~~l~~~~~~~~~~~~~l~~ai~~vl 312 (333)
.. +++|.-+|.- ++..++ .-+|+|.+|... .+-.. ...+.+ .|+.+..- ....++.-++..|..+
T Consensus 321 ~~-~viIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~G~daLls~vqmp~g~pvatv----~~~~nAa~~A~~Il~~- 393 (425)
T 2h31_A 321 IP-TVFVAVAGRSNGLGPVMSGN-TAYPVISCPPLTPDWGVQDVWSSLRLPSGLGCSTV----LSPEGSAQFAAQIFGL- 393 (425)
T ss_dssp CC-EEEEEECCSSCCHHHHHHHH-CSSCEEECCCCCTTTHHHHGGGTSSCCSSCCCEEC----CCHHHHHHHHHHHHHT-
T ss_pred CC-eEEEEEcCcccchHhHHhcc-CCCCEEEeeCccccccHHHHHHHhcCCCCCceEEe----cCchHHHHHHHHHHcc-
Confidence 11 2377776653 444444 478999999842 11111 112334 45554432 1223444455444322
Q ss_pred cCcchHHHHHHHHHHHHH
Q 044441 313 LQEEGKQIRRKAKEMSER 330 (333)
Q Consensus 313 ~~~~~~~~~~~a~~l~~~ 330 (333)
. ++.++++.+..+..
T Consensus 394 ~---~~~l~~kl~~~~~~ 408 (425)
T 2h31_A 394 S---NHLVWSKLRASILN 408 (425)
T ss_dssp T---CHHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHH
Confidence 2 35566655555443
No 150
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=40.42 E-value=23 Score=29.55 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=23.3
Q ss_pred HHhhcCCCEEEEcCCc-hhHHHHHHHcCCCeEEEec
Q 044441 11 ILETLKPTLVMYDLFQ-PWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 11 ~l~~~~pD~vv~D~~~-~~~~~~A~~lgiP~v~~~~ 45 (333)
.|...+||+||..... .-.....+++|||++.+..
T Consensus 55 ~i~~l~PDLIi~~~~~~~~~~~~L~~~gipvv~~~~ 90 (260)
T 2q8p_A 55 AVKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDF 90 (260)
T ss_dssp HHHHTCCSEEEEEGGGHHHHHHHHHHHTSCCEEECC
T ss_pred HHHhcCCCEEEecCccCHHHHHHHHHcCCcEEEecC
Confidence 3455799999986432 2233455678999998753
No 151
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=40.07 E-value=34 Score=28.45 Aligned_cols=34 Identities=12% Similarity=0.017 Sum_probs=22.8
Q ss_pred HHhhcCCCEEEEcCCc--hhHHHHHHHcCCCeEEEe
Q 044441 11 ILETLKPTLVMYDLFQ--PWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 11 ~l~~~~pD~vv~D~~~--~~~~~~A~~lgiP~v~~~ 44 (333)
.|...+||+||..... ......-++.|||++.+.
T Consensus 54 ~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~ 89 (256)
T 2r7a_A 54 GILSLRPDSVITWQDAGPQIVLDQLRAQKVNVVTLP 89 (256)
T ss_dssp HHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEEC
T ss_pred HHHccCCCEEEEcCCCCCHHHHHHHHHcCCcEEEec
Confidence 3445799999986432 233444567899998874
No 152
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=39.79 E-value=27 Score=30.79 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=22.7
Q ss_pred HhhcCCCEEEEcCCch-hHHHHHHHcCCCeEEEec
Q 044441 12 LETLKPTLVMYDLFQP-WAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 12 l~~~~pD~vv~D~~~~-~~~~~A~~lgiP~v~~~~ 45 (333)
|...+||+||...... -...+.+.+|||++.+..
T Consensus 92 Ilal~PDLIi~~~~~~~~~~~~~~~~GiPvv~~~~ 126 (346)
T 2etv_A 92 LITLQPDVVFITYVDRXTAXDIQEXTGIPVVVLSY 126 (346)
T ss_dssp HHHHCCSEEEEESCCHHHHHHHHHHHTSCEEEECC
T ss_pred HhcCCCCEEEEeCCccchHHHHHHhcCCcEEEEec
Confidence 3346999999874322 223345778999999753
No 153
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=39.64 E-value=17 Score=29.35 Aligned_cols=28 Identities=11% Similarity=0.354 Sum_probs=22.4
Q ss_pred HHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 277 NAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 277 na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
.+..=++-|+|+.+ |+|+|.+++.++++
T Consensus 104 ~~~Fe~~cGVGV~V---------T~EqI~~~V~~~i~ 131 (187)
T 3tl4_X 104 KMGMNENSGVGIEI---------TEDQVRNYVMQYIQ 131 (187)
T ss_dssp HHHHHHTTTTTCCC---------CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCeEe---------CHHHHHHHHHHHHH
Confidence 33444445999999 99999999999996
No 154
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=39.25 E-value=25 Score=33.22 Aligned_cols=35 Identities=9% Similarity=0.156 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHc-------CCCeEEE
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQY-------HIAAVLF 43 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~l-------giP~v~~ 43 (333)
.++.+++++.+||++|.+.. +..+|+++ |||++.+
T Consensus 424 ~~l~~~i~~~~pDLiig~~~---~~~~a~~~~~~g~~~gip~v~i 465 (519)
T 1qgu_B 424 WHFRSLMFTRQPDFMIGNSY---GKFIQRDTLAKGKAFEVPLIRL 465 (519)
T ss_dssp HHHHHHHHHHCCSEEEECGG---GHHHHHHHHHHCGGGCCCEEEC
T ss_pred HHHHHHHhhcCCCEEEECcc---hHHHHHHhhcccccCCCCeEEe
Confidence 45677788889999999943 46778888 9999875
No 155
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=39.13 E-value=18 Score=31.17 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=23.2
Q ss_pred cceeEeecCchhHHHHHH----hCcceecccc
Q 044441 243 IGGFLSHCGWGSAVEGMV----FGVPIIAMPM 270 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~----~GvP~i~~P~ 270 (333)
++++|+-||=||+++++. .++|++.++.
T Consensus 64 ~D~vi~~GGDGT~l~a~~~~~~~~~P~lGI~~ 95 (292)
T 2an1_A 64 ADLAVVVGGDGNMLGAARTLARYDINVIGINR 95 (292)
T ss_dssp CSEEEECSCHHHHHHHHHHHTTSSCEEEEBCS
T ss_pred CCEEEEEcCcHHHHHHHHHhhcCCCCEEEEEC
Confidence 355999999999999974 3789999973
No 156
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=39.00 E-value=37 Score=25.25 Aligned_cols=43 Identities=12% Similarity=-0.008 Sum_probs=27.3
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHH-----cCCCeEEEechhH
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQ-----YHIAAVLFLTISA 48 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~-----lgiP~v~~~~~~~ 48 (333)
.+..+.++..+||+||.|...+ .+..+.+. -++|+|.++....
T Consensus 37 ~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~ 86 (155)
T 1qkk_A 37 TEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGD 86 (155)
T ss_dssp HHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGG
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 3445556667899999994432 34444433 2689998876543
No 157
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=38.49 E-value=52 Score=23.83 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=19.0
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHH
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQ 35 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~ 35 (333)
.+..+.++..+||+||.|...+ .|..+++.
T Consensus 44 ~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~ 75 (140)
T 3c97_A 44 LQALQAYQNRQFDVIIMDIQMPVMDGLEAVSE 75 (140)
T ss_dssp HHHHHHHHHSCCSEEEECTTCCSSCHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHH
Confidence 3445566777899999995433 35544443
No 158
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=38.39 E-value=36 Score=29.53 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=23.7
Q ss_pred HHhhcCCCEEEEcCCc-hhHHHHHHHcCCCeEEEec
Q 044441 11 ILETLKPTLVMYDLFQ-PWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 11 ~l~~~~pD~vv~D~~~-~~~~~~A~~lgiP~v~~~~ 45 (333)
.|-..+||+||..... .....-.+++|||++.+..
T Consensus 79 ~i~~l~PDlIi~~~~~~~~~~~~L~~~Gipvv~~~~ 114 (326)
T 3psh_A 79 SLLALKPDVVFVTNYAPSEMIKQISDVNIPVVAISL 114 (326)
T ss_dssp HHHHTCCSEEEEETTCCHHHHHHHHTTTCCEEEECS
T ss_pred HHHccCCCEEEEeCCCChHHHHHHHHcCCCEEEEec
Confidence 3445799999987432 2234445678999999764
No 159
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=38.37 E-value=42 Score=23.78 Aligned_cols=41 Identities=15% Similarity=0.060 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-------CCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-------HIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-------giP~v~~~~~ 46 (333)
.+..+.++..+||+||.|...+ .+..+++.+ .+|.|.++..
T Consensus 41 ~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 90 (129)
T 1p6q_A 41 EQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQ 90 (129)
T ss_dssp HHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSC
T ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCC
Confidence 4455667777899999995433 355555543 3566665543
No 160
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=38.29 E-value=53 Score=23.83 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=25.4
Q ss_pred HHHHHHhh-cCCCEEEEcCCc---hhHHHHHHH----cCCCeEEEech
Q 044441 7 AFCNILET-LKPTLVMYDLFQ---PWAAEAAYQ----YHIAAVLFLTI 46 (333)
Q Consensus 7 ~l~~~l~~-~~pD~vv~D~~~---~~~~~~A~~----lgiP~v~~~~~ 46 (333)
+..+.+++ .+||+||.|... ..+..+++. -++|+|.++..
T Consensus 40 ~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~ 87 (140)
T 3h5i_A 40 AAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAH 87 (140)
T ss_dssp HHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESS
T ss_pred HHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECC
Confidence 44455555 789999999543 345544443 36888877654
No 161
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=38.27 E-value=46 Score=27.87 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=25.9
Q ss_pred HhhcCCCEEEEcCC--chhHHHHHHH----cCCCeEEEechh
Q 044441 12 LETLKPTLVMYDLF--QPWAAEAAYQ----YHIAAVLFLTIS 47 (333)
Q Consensus 12 l~~~~pD~vv~D~~--~~~~~~~A~~----lgiP~v~~~~~~ 47 (333)
.++|+||++|+=+. ...|...||. -|+|+|.++-.+
T Consensus 60 ~~~~~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p 101 (283)
T 1qv9_A 60 AEDFEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAP 101 (283)
T ss_dssp HHHHCCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGG
T ss_pred hhhcCCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCc
Confidence 37899999887643 3345556654 599999988665
No 162
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=38.24 E-value=42 Score=24.82 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=27.0
Q ss_pred hHHHHHHHhhcCCCEEEEcCCc--hhHHHHHHHc-----CCCeEEEechh
Q 044441 5 KPAFCNILETLKPTLVMYDLFQ--PWAAEAAYQY-----HIAAVLFLTIS 47 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~--~~~~~~A~~l-----giP~v~~~~~~ 47 (333)
..+..+.+++.+||+||.|... ..+..+.+.+ .+|+|.++...
T Consensus 50 ~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 99 (152)
T 3eul_A 50 GAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHD 99 (152)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccC
Confidence 3455667777899999999442 2344444432 47777776543
No 163
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=38.23 E-value=46 Score=26.60 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=27.5
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-----CCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-----HIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 47 (333)
.+..+.++..+||+||.|...+ .+..+++.+ ++|.|.++...
T Consensus 36 ~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~ 84 (225)
T 1kgs_A 36 EEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALS 84 (225)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSC
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 3445566777999999995433 344444432 68988887654
No 164
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=38.22 E-value=40 Score=29.95 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=24.1
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEec
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRL 199 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 199 (333)
.+++++.|+.+. ...+..++.+|.+.|..+.+.+..
T Consensus 17 rIl~~~~~~~gh--~~~~~~La~~L~~~GheV~v~~~~ 52 (398)
T 4fzr_A 17 RILVIAGCSEGF--VMPLVPLSWALRAAGHEVLVAASE 52 (398)
T ss_dssp EEEEECCSSHHH--HGGGHHHHHHHHHTTCEEEEEEEG
T ss_pred EEEEEcCCCcch--HHHHHHHHHHHHHCCCEEEEEcCH
Confidence 377777765432 223456888888889988877663
No 165
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=38.22 E-value=41 Score=29.95 Aligned_cols=36 Identities=11% Similarity=-0.010 Sum_probs=24.8
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEec
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRL 199 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 199 (333)
.+++++.|+.+. ..-+..++++|.+.|..|.+.++.
T Consensus 22 rIl~~~~~~~GH--v~p~l~La~~L~~~Gh~V~v~~~~ 57 (415)
T 3rsc_A 22 HLLIVNVASHGL--ILPTLTVVTELVRRGHRVSYVTAG 57 (415)
T ss_dssp EEEEECCSCHHH--HGGGHHHHHHHHHTTCEEEEEECG
T ss_pred EEEEEeCCCccc--cccHHHHHHHHHHCCCEEEEEeCH
Confidence 377887776542 223456788888889988887753
No 166
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=38.19 E-value=1.1e+02 Score=21.93 Aligned_cols=48 Identities=8% Similarity=0.031 Sum_probs=28.2
Q ss_pred hCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 261 FGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 261 ~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
..+|+|++--..+.......+...|+--.+. +.++.+++..+|++++.
T Consensus 71 ~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~-----KP~~~~~L~~~i~~~~~ 118 (139)
T 2jk1_A 71 PETVRIIITGYTDSASMMAAINDAGIHQFLT-----KPWHPEQLLSSARNAAR 118 (139)
T ss_dssp TTSEEEEEESCTTCHHHHHHHHHTTCCEEEE-----SSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHhhchhhhcc-----CCCCHHHHHHHHHHHHH
Confidence 3566666633333322233333345544453 45789999999999987
No 167
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=37.69 E-value=50 Score=22.61 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=24.9
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHH-------cCCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQ-------YHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~-------lgiP~v~~~~~ 46 (333)
.+..+.+++.+||++|.|...+ .+..+.+. -++|.|.++..
T Consensus 35 ~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 35 STALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESS
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCC
Confidence 3455666777899999994422 33333332 35788877654
No 168
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=37.53 E-value=48 Score=26.66 Aligned_cols=41 Identities=7% Similarity=0.107 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-----CCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-----HIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-----giP~v~~~~~ 46 (333)
.+..+.++..+||+||.|...+ .+..+++.+ ++|+|.++..
T Consensus 41 ~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~ 88 (233)
T 1ys7_A 41 AEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSAR 88 (233)
T ss_dssp HHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEcC
Confidence 3445566777999999995433 355444432 6888887654
No 169
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=37.22 E-value=46 Score=28.40 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=27.0
Q ss_pred HHHHHHhhcCCCEEEEcCCch---hHHHHHHH----cCCCeEEEech
Q 044441 7 AFCNILETLKPTLVMYDLFQP---WAAEAAYQ----YHIAAVLFLTI 46 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~~~---~~~~~A~~----lgiP~v~~~~~ 46 (333)
+..+.+++.+||+||.|..++ -|..+++. .++|.|.++..
T Consensus 196 eAl~~~~~~~~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI~lT~~ 242 (286)
T 3n0r_A 196 EALEAVTRRTPGLVLADIQLADGSSGIDAVKDILGRMDVPVIFITAF 242 (286)
T ss_dssp HHHHHHHHCCCSEEEEESCCTTSCCTTTTTHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEEEEeCC
Confidence 445567778999999996655 23333322 27999998764
No 170
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=36.96 E-value=40 Score=30.44 Aligned_cols=94 Identities=11% Similarity=-0.026 Sum_probs=0.0
Q ss_pred hHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEE
Q 044441 149 TKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLV 228 (333)
Q Consensus 149 ~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 228 (333)
.++.+++.... +++++|+-.+.... ..+.+.+.|++ +..+++..-.+.............
T Consensus 42 ~~l~~~l~~~g-~r~liVtd~~~~~~---~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~--------------- 101 (387)
T 3uhj_A 42 DKLAAYLAPLG-KRALVLIDRVLFDA---LSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKV--------------- 101 (387)
T ss_dssp TTTHHHHGGGC-SEEEEEECTTTHHH---HHHHC-------CCEEEEEECCSSCSHHHHHHHHHH---------------
T ss_pred HHHHHHHHHcC-CEEEEEECchHHHH---HHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHH---------------
Q ss_pred eccccchhhccccccceeEeecCchhHHHH-----HHhCcceecccccc
Q 044441 229 QGWVPQAKILRHGRIGGFLSHCGWGSAVEG-----MVFGVPIIAMPMVY 272 (333)
Q Consensus 229 ~~~~p~~~ll~~~~~~~~I~hgG~~s~~ea-----l~~GvP~i~~P~~~ 272 (333)
+....++++|.=|| ||++.+ ...|+|+|.+|...
T Consensus 102 ---------~~~~~~d~IIavGG-Gs~~D~AK~iA~~~~~p~i~IPTTa 140 (387)
T 3uhj_A 102 ---------AIEHGSDILVGVGG-GKTADTAKIVAIDTGARIVIAPTIA 140 (387)
T ss_dssp ---------HHHHTCSEEEEESS-HHHHHHHHHHHHHTTCEEEECCSSC
T ss_pred ---------HhhcCCCEEEEeCC-cHHHHHHHHHHHhcCCCEEEecCcc
No 171
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=36.88 E-value=56 Score=23.64 Aligned_cols=31 Identities=13% Similarity=-0.025 Sum_probs=20.6
Q ss_pred HHHHHHHhhcCCCEEEEcCCc--hhHHHHHHHc
Q 044441 6 PAFCNILETLKPTLVMYDLFQ--PWAAEAAYQY 36 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~--~~~~~~A~~l 36 (333)
.+..+.++..+||+||.|... ..+..+++.+
T Consensus 45 ~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l 77 (143)
T 2qv0_A 45 LDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNI 77 (143)
T ss_dssp HHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHH
Confidence 345566777889999999543 2455666554
No 172
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=36.81 E-value=60 Score=22.89 Aligned_cols=41 Identities=15% Similarity=0.020 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-------CCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-------HIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-------giP~v~~~~~ 46 (333)
.+..+.++..+||++|.|...+ .+..+++.+ .+|.+.++..
T Consensus 39 ~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~ 88 (128)
T 1jbe_A 39 VDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAE 88 (128)
T ss_dssp HHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESS
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecC
Confidence 3445566777899999995433 355555443 4677777654
No 173
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=36.64 E-value=40 Score=27.77 Aligned_cols=34 Identities=18% Similarity=0.074 Sum_probs=22.6
Q ss_pred HHhhcCCCEEEEcC--CchhHHHHHHHcCCCeEEEe
Q 044441 11 ILETLKPTLVMYDL--FQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 11 ~l~~~~pD~vv~D~--~~~~~~~~A~~lgiP~v~~~ 44 (333)
.|...+||+||... .......--++.|||++.+.
T Consensus 52 ~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~ 87 (245)
T 1n2z_A 52 RIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVD 87 (245)
T ss_dssp HHHHTCCSEEEECTTTSCHHHHHHHHHHTCCEEECC
T ss_pred HHhccCCCEEEEeCCCCcHHHHHHHHHCCCcEEEeC
Confidence 34457999999852 22233445567899998765
No 174
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=36.17 E-value=37 Score=24.62 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=24.6
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHH-------cCCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQ-------YHIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~-------lgiP~v~~~~~~ 47 (333)
.+..+.+++.+||+||.|...+ .+..+++. -++|.|.++...
T Consensus 36 ~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 86 (140)
T 3n53_A 36 KEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSE 86 (140)
T ss_dssp HHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC-
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCC
Confidence 4555667778999999995432 23333322 357888876543
No 175
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=36.09 E-value=21 Score=26.07 Aligned_cols=40 Identities=10% Similarity=0.069 Sum_probs=25.1
Q ss_pred HHHHHhhcCCCEEEEcCCch----hHHHHHHHc-----CCCeEEEechh
Q 044441 8 FCNILETLKPTLVMYDLFQP----WAAEAAYQY-----HIAAVLFLTIS 47 (333)
Q Consensus 8 l~~~l~~~~pD~vv~D~~~~----~~~~~A~~l-----giP~v~~~~~~ 47 (333)
..+.+++.+||+||.|...+ .+..+++.+ .+|.|.++...
T Consensus 42 a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 90 (136)
T 3kto_A 42 FMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSS 90 (136)
T ss_dssp HTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSC
T ss_pred HHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCC
Confidence 33445566899999995533 345555432 58888876543
No 176
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=35.76 E-value=42 Score=28.24 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=28.9
Q ss_pred HHHHHHHhhc--CCCEEEEcCC-------chhHHHHHHHcCCCeEEEech
Q 044441 6 PAFCNILETL--KPTLVMYDLF-------QPWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~--~pD~vv~D~~-------~~~~~~~A~~lgiP~v~~~~~ 46 (333)
|.+.+.+++. +||++++|.. +-.|..+.-.+++|+|.+.=.
T Consensus 97 P~ll~al~~L~~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVAKs 146 (246)
T 3ga2_A 97 PLIIEAAKKLETEPDVFLFDGNGYLHYNHMGVATHAAFFLGKPTIGIAKT 146 (246)
T ss_dssp HHHHHHHHHCSSCCSCEEEEBCSSSSTTSCCHHHHHHHHHTSCEEEEESS
T ss_pred HHHHHHHHhcCCCCCEEEEcCcEEecCCCcchhheeeeecCCCEEeeecc
Confidence 4555666653 7999999943 334666777789999997543
No 177
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=35.34 E-value=39 Score=24.22 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=25.2
Q ss_pred HHHHHHhhcCCCEEEEcCCc--hhHHHHHHHc-----CCCeEEEechh
Q 044441 7 AFCNILETLKPTLVMYDLFQ--PWAAEAAYQY-----HIAAVLFLTIS 47 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~~--~~~~~~A~~l-----giP~v~~~~~~ 47 (333)
+..+.+++.+||+||.|... ..+..+.+.+ .+|.|.++...
T Consensus 37 ~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 84 (134)
T 3f6c_A 37 SAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKN 84 (134)
T ss_dssp THHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC-
T ss_pred HHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCC
Confidence 44556677799999999442 2344444432 47777766543
No 178
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=35.21 E-value=45 Score=28.23 Aligned_cols=34 Identities=9% Similarity=-0.016 Sum_probs=23.0
Q ss_pred HHhhcCCCEEEEcCCc--hhHHHHHHHcCCCeEEEe
Q 044441 11 ILETLKPTLVMYDLFQ--PWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 11 ~l~~~~pD~vv~D~~~--~~~~~~A~~lgiP~v~~~ 44 (333)
.|...+||+||..... .-.....+++|||++.+.
T Consensus 54 ~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~ 89 (283)
T 2r79_A 54 GVLALRPDILIGTEEMGPPPVLKQLEGAGVRVETLS 89 (283)
T ss_dssp HHHTTCCSEEEECTTCCCHHHHHHHHHTTCCEEECC
T ss_pred HHHhcCCCEEEEeCccCcHHHHHHHHHcCCcEEEec
Confidence 3455799999987432 233445577899998864
No 179
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=35.19 E-value=41 Score=27.35 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCCEEEEcCCch--hHHHHHHHc----CCCeEEEech
Q 044441 7 AFCNILETLKPTLVMYDLFQP--WAAEAAYQY----HIAAVLFLTI 46 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l----giP~v~~~~~ 46 (333)
+..+.++..+||+||.|...+ .+..+++.+ ++|+|.++..
T Consensus 40 ~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 40 QALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp GHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEET
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCC
Confidence 344566677899999995433 355555443 6888887654
No 180
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=35.03 E-value=42 Score=24.34 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=27.3
Q ss_pred HHHHHHHhh-cCCCEEEEcCCch---hHHHHHHH-------cCCCeEEEechh
Q 044441 6 PAFCNILET-LKPTLVMYDLFQP---WAAEAAYQ-------YHIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~-~~pD~vv~D~~~~---~~~~~A~~-------lgiP~v~~~~~~ 47 (333)
.+..+.+++ .+||+||.|...+ .+..+++. -++|+|.++...
T Consensus 39 ~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~ 91 (140)
T 3lua_A 39 KKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSD 91 (140)
T ss_dssp HHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCC
T ss_pred HHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCC
Confidence 344556677 8999999996544 34444432 368888877543
No 181
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=34.98 E-value=50 Score=22.95 Aligned_cols=39 Identities=23% Similarity=0.205 Sum_probs=24.2
Q ss_pred HHHHhhcCCCEEEEcCCch--hHHHHHHHc----CCCeEEEechh
Q 044441 9 CNILETLKPTLVMYDLFQP--WAAEAAYQY----HIAAVLFLTIS 47 (333)
Q Consensus 9 ~~~l~~~~pD~vv~D~~~~--~~~~~A~~l----giP~v~~~~~~ 47 (333)
...+...+||++|.|...+ .+..+++.+ .+|.+.++...
T Consensus 38 ~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (121)
T 1zh2_A 38 LLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARS 82 (121)
T ss_dssp HHHHHHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEECCC
Confidence 3445566899999995432 355555443 57877776543
No 182
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=34.81 E-value=82 Score=25.85 Aligned_cols=101 Identities=15% Similarity=0.120 Sum_probs=53.7
Q ss_pred hHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEE
Q 044441 149 TKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLV 228 (333)
Q Consensus 149 ~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 228 (333)
.++-.+|.... ..+|+.|.. ....+..++..+.|-.++-+...-..+ ..+.. .-.....
T Consensus 59 ~~lg~~La~~g---~~lVsGGg~-----GiM~aa~~gAl~~gG~~iGV~~~~P~~------~~~~~-------~~t~~~~ 117 (217)
T 1wek_A 59 YRLGRALAEAG---FGVVTGGGP-----GVMEAVNRGAYEAGGVSVGLNIELPHE------QKPNP-------YQTHALS 117 (217)
T ss_dssp HHHHHHHHHHT---CEEEECSCS-----HHHHHHHHHHHHTTCCEEEEEECCTTC------CCCCS-------CCSEEEE
T ss_pred HHHHHHHHHCC---CEEEeCChh-----hHHHHHHHHHHHcCCCEEEEeeCCcch------hhccc-------cCCcCcc
Confidence 44556665542 777888764 366677777666655554442211100 01110 0011233
Q ss_pred eccccch-hhccccccceeEeecCchhHHHHH---H-------hCcceecccc
Q 044441 229 QGWVPQA-KILRHGRIGGFLSHCGWGSAVEGM---V-------FGVPIIAMPM 270 (333)
Q Consensus 229 ~~~~p~~-~ll~~~~~~~~I~hgG~~s~~eal---~-------~GvP~i~~P~ 270 (333)
....+.. .++...+-..++--||.||+-|.. . +++|++.+-.
T Consensus 118 ~~~f~~Rk~~m~~~sda~IvlpGG~GTL~El~e~lt~~qlg~~~~kPvvll~~ 170 (217)
T 1wek_A 118 LRYFFVRKVLFVRYAVGFVFLPGGFGTLDELSEVLVLLQTEKVHRFPVFLLDR 170 (217)
T ss_dssp ESCHHHHHHHHHHTEEEEEECSCCHHHHHHHHHHHHHHHTTSSCCCCEEEECH
T ss_pred cCCHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHHHHhhCCCCCCCEEEeCc
Confidence 3445543 333333334567788999988774 2 5799998853
No 183
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=34.79 E-value=1.8e+02 Score=23.44 Aligned_cols=149 Identities=12% Similarity=-0.011 Sum_probs=76.2
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEecc--ccchhhcc
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGW--VPQAKILR 239 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~p~~~ll~ 239 (333)
.+++.-.|+.+.. +....+++.|.+.|..+-..++.....-...+. ..+++.+.++....+-...++ .++.++..
T Consensus 9 ~I~lgiTGs~aa~--~k~~~ll~~L~~~g~eV~vv~T~~A~~~i~~~~-~~~~~~~~l~~l~g~~v~~~~~~~~hi~~s~ 85 (201)
T 3lqk_A 9 HVGFGLTGSHCTY--HEVLPQMERLVELGAKVTPFVTHTVQTTDTKFG-ESSEWINKIKQITEEPIVDSMVKAEPFGPKT 85 (201)
T ss_dssp EEEEECCSCGGGG--GGTHHHHHHHHHTTCEEEEECSSCSCCTTCCTT-CSCHHHHHHHHHCCSCCBCSHHHHGGGTTTS
T ss_pred EEEEEEEChHHHH--HHHHHHHHHHhhCCCEEEEEEChhHHHHHHHhh-chhHHHHHHHHHhCCCeEeecCccccccccc
Confidence 3655555665542 123445566666677776666544322111110 011111111111222111111 13333333
Q ss_pred ccccceeEeecCchhHHH----------------HHHhCcceecccc----ccchhhHHHHHhHhCeeeEeecC-----c
Q 044441 240 HGRIGGFLSHCGWGSAVE----------------GMVFGVPIIAMPM----VYEQSRNAKVVVDIGMGMDVPRD-----K 294 (333)
Q Consensus 240 ~~~~~~~I~hgG~~s~~e----------------al~~GvP~i~~P~----~~DQ~~na~~~~~~G~g~~l~~~-----~ 294 (333)
.++ ..+|.-|-+||+.. ++..+.|+|++|- ...+..|...+.+.|+=+..... .
T Consensus 86 ~aD-~mvIaP~TanTlAkiA~GiaDnLlt~aa~~~Lk~~~plvl~Pamn~~m~~h~~Nm~~L~~~G~~i~~P~~~~~~~~ 164 (201)
T 3lqk_A 86 PLD-CMVIAPMTGNSTSKFANAMTDSPVLMGAKATLRNGKPVVVGISTNDALGLNGINIMRLMATKNIYFIPFGQDNPQV 164 (201)
T ss_dssp CCS-EEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEEEEETTTTTTTHHHHHHHHTSTTEEECCEEESCTTT
T ss_pred ccC-EEEEccCCHHHHHHHHCcccCcHHHHHHHHHhhcCCCEEEEECCChhHHHhHHHHHHHHHCCCEEECCCCcccccc
Confidence 333 34667776665432 2457999999984 45777799999999966554321 0
Q ss_pred cCCC--cCHHHHHHHHHHHhcC
Q 044441 295 INQR--LRREEVARVIKHVLLQ 314 (333)
Q Consensus 295 ~~~~--~~~~~l~~ai~~vl~~ 314 (333)
++.. ...+.|.++|.+.|++
T Consensus 165 ~p~s~~a~~~~i~~tv~~al~~ 186 (201)
T 3lqk_A 165 KPNSLVARMEALPETIEAALRG 186 (201)
T ss_dssp CTTCEEECGGGHHHHHHHHHTT
T ss_pred CCCcccCCHHHHHHHHHHHHhc
Confidence 1111 3447888899888873
No 184
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=34.69 E-value=35 Score=26.55 Aligned_cols=42 Identities=5% Similarity=-0.082 Sum_probs=27.1
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHH-----cCCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQ-----YHIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~-----lgiP~v~~~~~~ 47 (333)
.+..+.++..+||+||.|...+ .|..+++. -++|.|.++...
T Consensus 41 ~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~ 89 (184)
T 3rqi_A 41 DEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYA 89 (184)
T ss_dssp HHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 3455667778999999995433 24444433 358888877543
No 185
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=34.52 E-value=44 Score=24.41 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHH-------cCCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQ-------YHIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~-------lgiP~v~~~~~~ 47 (333)
.+..+.+++.+||+||.|...+ .+..+++. .++|+|.++...
T Consensus 42 ~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~ 92 (147)
T 2zay_A 42 IEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRA 92 (147)
T ss_dssp HHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSC
T ss_pred HHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCC
Confidence 4455666777899999994322 34444433 357888876543
No 186
>3fet_A Electron transfer flavoprotein subunit alpha RELA protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum}
Probab=34.49 E-value=61 Score=25.32 Aligned_cols=39 Identities=5% Similarity=-0.065 Sum_probs=28.6
Q ss_pred HHHHHHHhhcCCCEEEEcCCch---hHHHHHHHcCCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP---WAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~---~~~~~A~~lgiP~v~~~~~ 46 (333)
+.+.++++ +||+|++-.-.. .+..+|.+||+|.++-...
T Consensus 61 ~~l~~~~~--~p~~Vl~g~t~~g~~vaprlAa~L~~~~~sdv~~ 102 (166)
T 3fet_A 61 EGILKIAG--NYDYIAIGSTEVGREIAGYLSFKTGFYTATEIFS 102 (166)
T ss_dssp HHHHHHHT--TCSEEEEECSHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred HHHHHHHc--CCCEEEEcCCCccccHHHHHHHHhCCCceeeEEE
Confidence 34555666 999999885322 3567889999999997754
No 187
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=34.42 E-value=48 Score=26.32 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=26.6
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-----CCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-----HIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-----giP~v~~~~~ 46 (333)
.+..+.++..+||+||.|...+ .|..+++.+ .+|.+.++..
T Consensus 41 ~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ls~~ 88 (215)
T 1a04_A 41 EQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVS 88 (215)
T ss_dssp HHHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEEECC
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEECC
Confidence 3455667777899999995433 355555443 4777777654
No 188
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=34.33 E-value=1.4e+02 Score=21.89 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=33.3
Q ss_pred hCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 261 FGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 261 ~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
..+|+|++--..+ ........+.|+--.+. ..++.+++..+|+.++.
T Consensus 74 ~~~pii~ls~~~~-~~~~~~~~~~g~~~~l~-----kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 74 PDLPMILVTGHGD-IPMAVQAIQDGAYDFIA-----KPFAADRLVQSARRAEE 120 (155)
T ss_dssp TTSCEEEEECGGG-HHHHHHHHHTTCCEEEE-----SSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCC-hHHHHHHHhcCCCeEEe-----CCCCHHHHHHHHHHHHH
Confidence 4788887743333 34455566678766664 45799999999999997
No 189
>3ip0_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; alpha beta, ATP-binding, folate biosynthesis, nucleotide-binding; HET: APC HHR HHS; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1hka_A 1eqm_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 1q0n_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A 1kbr_A 1hq2_A* ...
Probab=33.86 E-value=52 Score=25.58 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=22.9
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCC
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSE 190 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~ 190 (333)
+.|+++||....+...+...+..|.+..
T Consensus 2 iAyi~lGSNlGd~~~~l~~A~~~L~~~~ 29 (158)
T 3ip0_A 2 VAYIAIGSNLASPLEQVNAALKALGDIP 29 (158)
T ss_dssp EEEEEEEECSSCHHHHHHHHHHHHHTST
T ss_pred EEEEEEecchhhHHHHHHHHHHHHHcCC
Confidence 6799999987667788888888887753
No 190
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=33.64 E-value=43 Score=26.43 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=26.0
Q ss_pred HHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-----CCCeEEEech
Q 044441 7 AFCNILETLKPTLVMYDLFQP--WAAEAAYQY-----HIAAVLFLTI 46 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-----giP~v~~~~~ 46 (333)
+..+.++..+||+||.|...+ .|..+++.+ ++|+|.++..
T Consensus 39 ~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~ 85 (208)
T 1yio_A 39 TFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAH 85 (208)
T ss_dssp HHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESC
T ss_pred HHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCC
Confidence 444556677899999995433 355555443 5888887654
No 191
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=33.61 E-value=58 Score=24.25 Aligned_cols=41 Identities=2% Similarity=-0.050 Sum_probs=26.2
Q ss_pred HHHHHHHhhc--CCCEEEEcCCc--hhHHHHHHHc-----CCCeEEEech
Q 044441 6 PAFCNILETL--KPTLVMYDLFQ--PWAAEAAYQY-----HIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~--~pD~vv~D~~~--~~~~~~A~~l-----giP~v~~~~~ 46 (333)
.+..+.+++. +||+||.|... ..+..+++.+ .+|+|.++..
T Consensus 71 ~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 71 EEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp HHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEecc
Confidence 4555666666 89999999542 2344444432 5888887654
No 192
>2qx0_A 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; 3-layered alpha-BATA-alpha fold, homodimer, ternary complex, transferase; HET: APC PH2; 1.80A {Yersinia pestis}
Probab=33.50 E-value=72 Score=24.83 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=24.4
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCC
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSE 190 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~ 190 (333)
.+|+++||........+...++.|.+.+
T Consensus 3 ~~~i~LGSNlGd~~~~l~~A~~~L~~~~ 30 (159)
T 2qx0_A 3 RVYIALGSNLAMPLQQVSAAREALAHLP 30 (159)
T ss_dssp EEEEEEEECSSSCHHHHHHHHHHHHTCT
T ss_pred EEEEEEeCchhhHHHHHHHHHHHHhcCC
Confidence 5899999998788899999999998753
No 193
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=33.28 E-value=78 Score=22.43 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=21.4
Q ss_pred hcCCCEEEEcCCch--hHHHHHHHc-------CCCeEEEechh
Q 044441 14 TLKPTLVMYDLFQP--WAAEAAYQY-------HIAAVLFLTIS 47 (333)
Q Consensus 14 ~~~pD~vv~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 47 (333)
..+||+||.|...+ .|..+++.+ .+|.|.++...
T Consensus 49 ~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (129)
T 3h1g_A 49 NADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEG 91 (129)
T ss_dssp CTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCC
Confidence 34799999995433 355555432 47888876543
No 194
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=33.14 E-value=39 Score=30.40 Aligned_cols=44 Identities=5% Similarity=-0.079 Sum_probs=21.4
Q ss_pred HHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEE
Q 044441 151 IMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFI 194 (333)
Q Consensus 151 l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i 194 (333)
+.+++.....+++++|+-++.........+.+.+.|++.+..+.
T Consensus 24 l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~ 67 (387)
T 3bfj_A 24 VGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVA 67 (387)
T ss_dssp HHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEE
Confidence 33344333323355555444332100256777777777776653
No 195
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=33.14 E-value=69 Score=22.83 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=24.7
Q ss_pred HHHHHHhhcCCCEEEEcCCch--hHHHHHHH-----cCCCeEEEech
Q 044441 7 AFCNILETLKPTLVMYDLFQP--WAAEAAYQ-----YHIAAVLFLTI 46 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~-----lgiP~v~~~~~ 46 (333)
+..+.++..+||+||.|...+ .+..+++. ..+|.|.++..
T Consensus 38 ~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (136)
T 1mvo_A 38 EALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAK 84 (136)
T ss_dssp HHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECT
T ss_pred HHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 444556677899999995432 34444443 25777776543
No 196
>1f9y_A HPPK, protein (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase); pyrophosphoryl transfer, catalytic mechanism, folate, ternary complex; HET: APC HHR; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1eqm_A* 1hka_A 1q0n_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 3h4a_A* 3ip0_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A ...
Probab=33.13 E-value=55 Score=25.47 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=23.6
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCC
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSE 190 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~ 190 (333)
.+|+++||........+...++.|.+.+
T Consensus 2 ~~~i~LGSNlGd~~~~l~~A~~~L~~~~ 29 (158)
T 1f9y_A 2 VAYIAIGSNLASPLEQVNAALKALGDIP 29 (158)
T ss_dssp EEEEEEEECSSCHHHHHHHHHHHHHTST
T ss_pred EEEEEEecCccCHHHHHHHHHHHHhcCC
Confidence 6899999988767888999999998753
No 197
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=32.60 E-value=1.3e+02 Score=27.68 Aligned_cols=93 Identities=12% Similarity=0.110 Sum_probs=48.3
Q ss_pred HHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEe
Q 044441 150 KIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQ 229 (333)
Q Consensus 150 ~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 229 (333)
++.+++.....+++++|+-++... ...+.+.+.|++.+..+.+..-.. + -+.+-.++.
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~---~~~~~v~~~L~~~gi~~~~~~~~g--e-------~~~~~v~~~---------- 138 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN---ICANKIVDSLSQNGMTVTKLVFGG--E-------ASLVELDKL---------- 138 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH---HTHHHHHHHHHHTTCEEEEEEECS--C-------CCHHHHHHH----------
T ss_pred HHHHHHHhcCCCEEEEEECccHHH---HHHHHHHHHHHHCCCeEEEEeeCC--C-------CCHHHHHHH----------
Confidence 344555443333466666544332 356777788877777654322211 1 011111111
Q ss_pred ccccchhhccccccceeEeecCchhHHHH-----HHhCcceeccccc
Q 044441 230 GWVPQAKILRHGRIGGFLSHCGWGSAVEG-----MVFGVPIIAMPMV 271 (333)
Q Consensus 230 ~~~p~~~ll~~~~~~~~I~hgG~~s~~ea-----l~~GvP~i~~P~~ 271 (333)
.+++.. .++++|.=|| ||+..+ ...|+|.|.+|..
T Consensus 139 -----~~~~~~-~~D~IIAvGG-GSviD~AK~iA~~~giP~I~IPTT 178 (450)
T 1ta9_A 139 -----RKQCPD-DTQVIIGVGG-GKTMDSAKYIAHSMNLPSIICPTT 178 (450)
T ss_dssp -----HTTSCT-TCCEEEEEES-HHHHHHHHHHHHHTTCCEEEEESS
T ss_pred -----HHHHhh-CCCEEEEeCC-cHHHHHHHHHHHhcCCCEEEEeCC
Confidence 011222 3455888877 555554 4569999999985
No 198
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=32.37 E-value=29 Score=29.27 Aligned_cols=31 Identities=10% Similarity=0.113 Sum_probs=21.7
Q ss_pred cCCCEEEEcC---------C----chhHHHHHHHcCCCeEEEec
Q 044441 15 LKPTLVMYDL---------F----QPWAAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 15 ~~pD~vv~D~---------~----~~~~~~~A~~lgiP~v~~~~ 45 (333)
.+||+||+-. . +.+|+.-|..+|||.|.++.
T Consensus 85 ~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 128 (247)
T 1j9j_A 85 KRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISS 128 (247)
T ss_dssp TCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCEEEECCccCCCCCcCeecchhHHHHHHHHhcCCCeEEEec
Confidence 5899999741 1 23344455669999999975
No 199
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=32.12 E-value=63 Score=22.92 Aligned_cols=41 Identities=12% Similarity=0.297 Sum_probs=24.8
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc------CCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY------HIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l------giP~v~~~~~ 46 (333)
.+..+.++..+||++|.|...+ .|..+.+.+ .+|.|.++..
T Consensus 38 ~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ii~ls~~ 86 (130)
T 1dz3_A 38 QDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAF 86 (130)
T ss_dssp HHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEEEEEET
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcEEEEecC
Confidence 4555667777899999995433 344444332 3566666544
No 200
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=31.95 E-value=34 Score=24.20 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=24.9
Q ss_pred HHHHHhhcCCCEEEEcCCch--hHHHHHHH-------cCCCeEEEechh
Q 044441 8 FCNILETLKPTLVMYDLFQP--WAAEAAYQ-------YHIAAVLFLTIS 47 (333)
Q Consensus 8 l~~~l~~~~pD~vv~D~~~~--~~~~~A~~-------lgiP~v~~~~~~ 47 (333)
..+.++..+||++|.|...+ .+..+.+. -++|.|.++...
T Consensus 38 a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 86 (127)
T 2jba_A 38 AVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARG 86 (127)
T ss_dssp HHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETT
T ss_pred HHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCC
Confidence 33445566899999995433 34444443 257888876654
No 201
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=31.94 E-value=76 Score=22.83 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=25.9
Q ss_pred HHHHHHHhh------cCCCEEEEcCCch--hHHHHHHHc-------CCCeEEEechh
Q 044441 6 PAFCNILET------LKPTLVMYDLFQP--WAAEAAYQY-------HIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~------~~pD~vv~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 47 (333)
.+..+.+++ .+||+||.|...+ .+..+++.+ ++|.|.++...
T Consensus 43 ~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~ 99 (143)
T 2qvg_A 43 NQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAY 99 (143)
T ss_dssp HHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCC
T ss_pred HHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCC
Confidence 344555665 6899999995432 355555442 46777776543
No 202
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=31.83 E-value=41 Score=24.59 Aligned_cols=40 Identities=13% Similarity=-0.028 Sum_probs=24.7
Q ss_pred HHHHHHhh-cCCCEEEEcCCch--hHHHHHHHc-----CCCeEEEech
Q 044441 7 AFCNILET-LKPTLVMYDLFQP--WAAEAAYQY-----HIAAVLFLTI 46 (333)
Q Consensus 7 ~l~~~l~~-~~pD~vv~D~~~~--~~~~~A~~l-----giP~v~~~~~ 46 (333)
.+..+.+. .+||+||.|...+ .+..+++.+ .+|+|.++..
T Consensus 57 ~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 57 QIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp HHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCC
Confidence 34444555 7899999995432 344444332 5888887654
No 203
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=31.55 E-value=84 Score=22.31 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=26.4
Q ss_pred HHHHHHHhh-------cCCCEEEEcCCch--hHHHHHHH-------cCCCeEEEechh
Q 044441 6 PAFCNILET-------LKPTLVMYDLFQP--WAAEAAYQ-------YHIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~-------~~pD~vv~D~~~~--~~~~~A~~-------lgiP~v~~~~~~ 47 (333)
.+..+.++. .+||+||.|...+ .+..+++. -++|+|.++...
T Consensus 38 ~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 38 MEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp HHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCC
T ss_pred HHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCC
Confidence 445556665 7899999995432 34444433 357888876553
No 204
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=31.53 E-value=67 Score=26.47 Aligned_cols=42 Identities=12% Similarity=0.103 Sum_probs=27.4
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc----CCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY----HIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l----giP~v~~~~~~ 47 (333)
.+..+.++..+||+||.|...+ .|..+++.+ .+|+|.++...
T Consensus 71 ~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 71 MNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARD 118 (249)
T ss_dssp HHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCC
Confidence 3445566778999999995543 344555443 58888876543
No 205
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=31.16 E-value=91 Score=22.29 Aligned_cols=32 Identities=9% Similarity=0.047 Sum_probs=20.5
Q ss_pred cCCCEEEEcCCch--hHHHHHHHc------CCCeEEEech
Q 044441 15 LKPTLVMYDLFQP--WAAEAAYQY------HIAAVLFLTI 46 (333)
Q Consensus 15 ~~pD~vv~D~~~~--~~~~~A~~l------giP~v~~~~~ 46 (333)
.+||+||.|..++ .|..+++.+ .+|.|.++..
T Consensus 51 ~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~ 90 (133)
T 2r25_B 51 ENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAF 90 (133)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESC
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECC
Confidence 6899999995433 355444332 4687777654
No 206
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} SCOP: c.56.2.1
Probab=31.12 E-value=80 Score=25.80 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=29.1
Q ss_pred HHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechh
Q 044441 11 ILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 11 ~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
.+++.-|++..+|+-+.+-..+|+.+|+|++.+...+
T Consensus 164 ~l~~~~~ga~~veME~aa~a~~a~~~gip~~~ir~Is 200 (233)
T 3eei_A 164 EIRKHFPEVKAVEMEAAAIAQTCHQLETPFVIIRAVS 200 (233)
T ss_dssp HHHHHCTTEEEEESSHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHcCCceEEechHHHHHHHHHHcCCCEEEEEEEe
Confidence 3433336999999888888899999999999987554
No 207
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=31.05 E-value=65 Score=25.81 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHH----cCCCeEEEechhH
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQ----YHIAAVLFLTISA 48 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~----lgiP~v~~~~~~~ 48 (333)
.+..+.++..+||+||.|...+ .+..+++. -++|.|.++....
T Consensus 38 ~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~~~ 86 (230)
T 2oqr_A 38 PAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 86 (230)
T ss_dssp HHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECCHH
T ss_pred HHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCCCc
Confidence 3445566677899999995433 34444443 3689998876543
No 208
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=31.00 E-value=1.4e+02 Score=21.17 Aligned_cols=48 Identities=2% Similarity=-0.015 Sum_probs=31.9
Q ss_pred hCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 261 FGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 261 ~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
..+|+|++--..+...-.....+.|+--.+. +.++.+++..+|++++.
T Consensus 79 ~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~-----kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 79 RDLAIVVVSANAREGELEFNSQPLAVSTWLE-----KPIDENLLILSLHRAID 126 (140)
T ss_dssp TTCEEEEECTTHHHHHHHHCCTTTCCCEEEC-----SSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHhhhcCCCEEEe-----CCCCHHHHHHHHHHHHH
Confidence 3678887754433332222445567766674 45899999999999997
No 209
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=30.92 E-value=64 Score=26.43 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=27.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-----CCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-----HIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 47 (333)
.+..+.++..+||+||.|...+ .|..+++.+ .+|.|.++...
T Consensus 57 ~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~ 105 (250)
T 3r0j_A 57 AQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARD 105 (250)
T ss_dssp HHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECST
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCC
Confidence 3455667778999999995433 355555432 58888877654
No 210
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=30.80 E-value=87 Score=22.91 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=21.2
Q ss_pred cCCCEEEEcCCch--hHHHHHHHc-------CCCeEEEechh
Q 044441 15 LKPTLVMYDLFQP--WAAEAAYQY-------HIAAVLFLTIS 47 (333)
Q Consensus 15 ~~pD~vv~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 47 (333)
.+||+||.|...+ .|..+++.+ ++|.|.++...
T Consensus 60 ~~~dlillD~~lp~~~g~~l~~~l~~~~~~~~~piiils~~~ 101 (149)
T 1i3c_A 60 PRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSH 101 (149)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCC
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEECCC
Confidence 5799999995433 355444432 57888876543
No 211
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=30.73 E-value=39 Score=27.79 Aligned_cols=42 Identities=7% Similarity=0.050 Sum_probs=30.0
Q ss_pred hHHHHHHHhhcCCCEEEEcCCch---hHHHHHHHcCCCeEEEech
Q 044441 5 KPAFCNILETLKPTLVMYDLFQP---WAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~---~~~~~A~~lgiP~v~~~~~ 46 (333)
.+.+.+++++.+||+|++-.... .+..+|.+||+|.++-+..
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~G~~laprlAa~L~~~~~sdv~~ 124 (217)
T 3ih5_A 80 TSILVNLFKEEQPQICLMGATVIGRDLGPRVSSALTSGLTADCTS 124 (217)
T ss_dssp HHHHHHHHHHHCCSEEEEECSHHHHHHHHHHHHHTTCCCBCSCSE
T ss_pred HHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHhCCCccceEEE
Confidence 34567778888999999875432 2557888899998875543
No 212
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=30.56 E-value=80 Score=27.59 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=23.4
Q ss_pred cceeEeecCchhHHHHHH------hCcceeccccc
Q 044441 243 IGGFLSHCGWGSAVEGMV------FGVPIIAMPMV 271 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~------~GvP~i~~P~~ 271 (333)
.+++|.-||=||+.|++. .++|+.++|..
T Consensus 81 ~d~vvv~GGDGTv~~v~~~l~~~~~~~pl~iIP~G 115 (337)
T 2qv7_A 81 YDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMG 115 (337)
T ss_dssp CSEEEEEECHHHHHHHHHHHTTCSSCCEEEEEECS
T ss_pred CCEEEEEcCchHHHHHHHHHHhCCCCCcEEEecCC
Confidence 345999999999999862 46899999973
No 213
>2q37_A OHCU decarboxylase; 2-OXO-4-hydroxy-4-carboxy-5-ureidoimidazoline, plant protein, lyase; HET: 3AL; 2.50A {Arabidopsis thaliana} SCOP: a.288.1.1
Probab=30.45 E-value=1.2e+02 Score=24.04 Aligned_cols=53 Identities=11% Similarity=0.000 Sum_probs=40.1
Q ss_pred hhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Q 044441 274 QSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSER 330 (333)
Q Consensus 274 Q~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~ 330 (333)
+..|+.+-++.|.=.++. -...+.++|.+++++=|.++...+.+..+.++.+.
T Consensus 117 ~~LN~~Ye~kFGfpFVi~----v~G~s~~~IL~~l~~RL~N~~~~E~~~Al~Ev~kI 169 (181)
T 2q37_A 117 AEWNVLYKKKFGFIFIIC----ASGRTHAEMLHALKERYENRPIVELEIAAMEQMKI 169 (181)
T ss_dssp HHHHHHHHHHHSSCCCCC----CSSCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEE----eCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 456999999999888886 35678899999999888865455666666666554
No 214
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=30.41 E-value=86 Score=22.59 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=21.5
Q ss_pred cCCCEEEEcCCch--hHHHHHHHc-------CCCeEEEechh
Q 044441 15 LKPTLVMYDLFQP--WAAEAAYQY-------HIAAVLFLTIS 47 (333)
Q Consensus 15 ~~pD~vv~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 47 (333)
.+||+||.|...+ .+..+.+.+ ++|.|.++...
T Consensus 61 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~ 102 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSS 102 (149)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCC
Confidence 7899999995432 455555442 47888876543
No 215
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=30.02 E-value=45 Score=24.67 Aligned_cols=41 Identities=20% Similarity=0.125 Sum_probs=22.6
Q ss_pred HHHHHHHhh-cCCCEEEEcCCch--hHHHHHHH-----cCCCeEEEech
Q 044441 6 PAFCNILET-LKPTLVMYDLFQP--WAAEAAYQ-----YHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~-~~pD~vv~D~~~~--~~~~~A~~-----lgiP~v~~~~~ 46 (333)
.+..+.++. .+||+||.|...+ .+..+.+. -++|+|.++..
T Consensus 39 ~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~ 87 (154)
T 2qsj_A 39 SDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGE 87 (154)
T ss_dssp HHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEEEC---
T ss_pred HHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEEEeCC
Confidence 455566777 8899999995432 23333333 25788877654
No 216
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=29.84 E-value=58 Score=23.50 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=24.6
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-------CCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-------HIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-------giP~v~~~~~ 46 (333)
.+..+.++..+||+||.|...+ .+..+.+.+ .+|+|.++..
T Consensus 41 ~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 41 GQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp HHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECT
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECC
Confidence 4556667777899999994422 344443332 3677766543
No 217
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=29.82 E-value=54 Score=28.18 Aligned_cols=33 Identities=21% Similarity=0.099 Sum_probs=22.5
Q ss_pred hcCCCEEEEcC----------C----chhHHHHHHHcCCCeEEEech
Q 044441 14 TLKPTLVMYDL----------F----QPWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 14 ~~~pD~vv~D~----------~----~~~~~~~A~~lgiP~v~~~~~ 46 (333)
..+||+||+-. . +.+|+.-|..+|||.|.++..
T Consensus 82 ~~~PDLVvSGIN~G~Nlg~d~v~ySGTVgAA~Ea~~~GiPaIA~S~~ 128 (280)
T 1l5x_A 82 GRKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPALAYSAY 128 (280)
T ss_dssp TSCCSEEEEEEEEBCCCSHHHHTTCHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCCEEEECCccCCcCCccccccchhHHHHHHHHHcCCCeEEEEcc
Confidence 56899999741 2 223444456699999999763
No 218
>1cbk_A Protein (7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase); transferase; HET: ROI; 2.02A {Haemophilus influenzae} SCOP: d.58.30.1
Probab=29.20 E-value=70 Score=24.92 Aligned_cols=28 Identities=11% Similarity=0.292 Sum_probs=23.6
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCC
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSE 190 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~ 190 (333)
.+|+++||........+...++.|.+.+
T Consensus 3 ~~~i~LGSNlGd~~~~l~~A~~~L~~~~ 30 (160)
T 1cbk_A 3 TAYIALGSNLNTPVEQLHAALKAISQLS 30 (160)
T ss_dssp EEEEEEEECSSCHHHHHHHHHHHHHTST
T ss_pred EEEEEEeccchHHHHHHHHHHHHHhhCC
Confidence 5899999988777888999999998753
No 219
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=28.89 E-value=1.2e+02 Score=21.77 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=28.4
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecC
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLH 200 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~ 200 (333)
-|||.|.| .++.+.+|+..+++.|.+++..++..
T Consensus 3 qifvvfss----dpeilkeivreikrqgvrvvllysdq 36 (162)
T 2l82_A 3 QIFVVFSS----DPEILKEIVREIKRQGVRVVLLYSDQ 36 (162)
T ss_dssp EEEEEEES----CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred eEEEEecC----CHHHHHHHHHHHHhCCeEEEEEecCc
Confidence 57777766 57899999999999999999888754
No 220
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=28.77 E-value=1.2e+02 Score=26.48 Aligned_cols=28 Identities=14% Similarity=-0.004 Sum_probs=22.6
Q ss_pred ceeEeecCchhHHHHH--------HhCcceeccccc
Q 044441 244 GGFLSHCGWGSAVEGM--------VFGVPIIAMPMV 271 (333)
Q Consensus 244 ~~~I~hgG~~s~~eal--------~~GvP~i~~P~~ 271 (333)
+++|.-||=||+.|++ ..++|+.++|..
T Consensus 84 d~vvv~GGDGTl~~v~~~l~~~~~~~~~plgiiP~G 119 (332)
T 2bon_A 84 ATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLG 119 (332)
T ss_dssp SEEEEEESHHHHHHHHHHHHHCCSSCCCEEEEEECS
T ss_pred CEEEEEccchHHHHHHHHHhhcccCCCCeEEEecCc
Confidence 4599999999999985 256798889873
No 221
>2o8i_A AGR_C_4230P, hypothetical protein ATU2327; agrobacterium tumefaciens STR. C58, structural GENO PSI-2, protein structure initiative; 2.60A {Agrobacterium tumefaciens str} SCOP: a.288.1.1
Probab=28.38 E-value=1.5e+02 Score=23.09 Aligned_cols=53 Identities=8% Similarity=0.165 Sum_probs=40.6
Q ss_pred hhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Q 044441 274 QSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSER 330 (333)
Q Consensus 274 Q~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~ 330 (333)
+..|+.+-++.|.=.++. -...+.++|.+++++=|.++...+.+..+.++.+.
T Consensus 101 ~~lN~~Ye~kFGfpFvi~----v~g~~~~~Il~~l~~Rl~nd~~~E~~~a~~e~~kI 153 (165)
T 2o8i_A 101 TQLNSAYTEKFGFPFIIA----VKGLNRHDILSAFDTRIDNNAAQEFATATGQVEKI 153 (165)
T ss_dssp HHHHHHHHHHHSSCCCCC----CTTCCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeeEee----eCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 456999999999888886 35578899999999888865556677777666554
No 222
>3qbc_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; protein-inhibitor complex, ferredoxin-like fold; HET: B55; 1.65A {Staphylococcus aureus}
Probab=28.31 E-value=69 Score=25.01 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=22.9
Q ss_pred EEEEEecCcccCCHHHHHHHHHHHhcC
Q 044441 163 VVFVSFGSEYFLSKDEMHEIASGLLLS 189 (333)
Q Consensus 163 ~v~vs~Gs~~~~~~~~~~~~~~~l~~~ 189 (333)
.+|+++||........+...+..|.+.
T Consensus 6 ~v~i~LGSNlGd~~~~l~~A~~~L~~~ 32 (161)
T 3qbc_A 6 QAYLGLGSNIGDRESQLNDAIKILNEY 32 (161)
T ss_dssp EEEEEEEECSSSHHHHHHHHHHHHHHS
T ss_pred EEEEEEecCccCHHHHHHHHHHHHhcC
Confidence 799999998876778888888888774
No 223
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=28.28 E-value=71 Score=24.47 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=28.4
Q ss_pred cchHHHHHHHhhcCCCEEEEc-CCc------h-------hHHHHHHHcCCCeEEE
Q 044441 3 DAKPAFCNILETLKPTLVMYD-LFQ------P-------WAAEAAYQYHIAAVLF 43 (333)
Q Consensus 3 ~~~~~l~~~l~~~~pD~vv~D-~~~------~-------~~~~~A~~lgiP~v~~ 43 (333)
.....+.+++++++||.||+. ++. . ++..++..+++|++.+
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~v 96 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLW 96 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEe
Confidence 456789999999999988877 221 1 1224455579998883
No 224
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=28.12 E-value=75 Score=22.75 Aligned_cols=40 Identities=13% Similarity=-0.009 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCCCEEEEcCCchhHHHHHHHc-----CCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQPWAAEAAYQY-----HIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~~~~~A~~l-----giP~v~~~~~~ 47 (333)
.+..+.+++.+||+|| .....+..+++.+ .+|+|.++...
T Consensus 52 ~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 96 (137)
T 2pln_A 52 EDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEKHSSIVVLVSSDNP 96 (137)
T ss_dssp HHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHHSTTSEEEEEESSC
T ss_pred HHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhcCCCccEEEEeCCC
Confidence 4455666777899999 2223344444433 78888876543
No 225
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=28.12 E-value=66 Score=28.09 Aligned_cols=42 Identities=10% Similarity=0.017 Sum_probs=32.0
Q ss_pred hHHHHHHHhhcCCCEEEEcCCch---hHHHHHHHcCCCeEEEech
Q 044441 5 KPAFCNILETLKPTLVMYDLFQP---WAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~---~~~~~A~~lgiP~v~~~~~ 46 (333)
.+.+.+++++.+||+|++-.... .+..+|.+||+|.++-...
T Consensus 75 a~~La~li~~~~pdlVL~g~ts~G~~laprlAa~L~~~~vtdv~~ 119 (315)
T 1efv_A 75 TPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIA 119 (315)
T ss_dssp HHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHHHTCCCEEEECE
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcchHHHHHHHHhCCCccccEEE
Confidence 34567778888999999885432 3667889999999997754
No 226
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=27.78 E-value=80 Score=21.91 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=34.0
Q ss_pred hCcceeccccccchhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhc
Q 044441 261 FGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLL 313 (333)
Q Consensus 261 ~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~ 313 (333)
..+|+|++ ..+.........+.|+--.+. +.++.+++..+|++++.
T Consensus 79 ~~~~ii~~--~~~~~~~~~~~~~~g~~~~l~-----kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 79 KNVPIVII--GNPDGFAQHRKLKAHADEYVA-----KPVDADQLVERAGALIG 124 (127)
T ss_dssp TTSCEEEE--ECGGGHHHHHHSTTCCSEEEE-----SSCCHHHHHHHHHHHHC
T ss_pred cCCCEEEE--ecCCchhHHHHHHhCcchhee-----CCCCHHHHHHHHHHHHc
Confidence 46888888 444455566667778766664 45799999999999886
No 227
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=27.70 E-value=36 Score=30.56 Aligned_cols=32 Identities=3% Similarity=-0.011 Sum_probs=18.1
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEE
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFI 194 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i 194 (333)
+++++|+-.+... ....+.+.+.|++.+..+.
T Consensus 32 ~~~livtd~~~~~--~g~~~~v~~~L~~~g~~~~ 63 (386)
T 1rrm_A 32 QKALIVTDKTLVQ--CGVVAKVTDKMDAAGLAWA 63 (386)
T ss_dssp CEEEEECBHHHHH--TTHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEECcchhh--chHHHHHHHHHHHcCCeEE
Confidence 3355565433321 1356777778877776654
No 228
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=27.48 E-value=2.8e+02 Score=23.46 Aligned_cols=32 Identities=9% Similarity=-0.052 Sum_probs=21.4
Q ss_pred CeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEec
Q 044441 161 WSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRL 199 (333)
Q Consensus 161 ~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 199 (333)
+.++.|..|..+ ...+..|.+.|..+.+....
T Consensus 14 k~VLVVGgG~va-------~rka~~Ll~~Ga~VtViap~ 45 (274)
T 1kyq_A 14 KRILLIGGGEVG-------LTRLYKLMPTGCKLTLVSPD 45 (274)
T ss_dssp CEEEEEEESHHH-------HHHHHHHGGGTCEEEEEEEE
T ss_pred CEEEEECCcHHH-------HHHHHHHHhCCCEEEEEcCC
Confidence 457777666543 45667777888888777553
No 229
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=27.45 E-value=84 Score=17.37 Aligned_cols=29 Identities=3% Similarity=0.220 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 302 EEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 302 ~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
.++.+.+.++|.. ++.+...+.++++++.
T Consensus 4 nQLE~kVEeLl~~--n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 4 XQLEXKVXELLXK--NXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh--hhhHHHHHHHHHHHHh
Confidence 3567788888863 6789999999998875
No 230
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=27.15 E-value=67 Score=28.12 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=33.0
Q ss_pred hHHHHHHHhhcCCCEEEEcCCch---hHHHHHHHcCCCeEEEechh
Q 044441 5 KPAFCNILETLKPTLVMYDLFQP---WAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 5 ~~~l~~~l~~~~pD~vv~D~~~~---~~~~~A~~lgiP~v~~~~~~ 47 (333)
...+.+++++.+||+|++-.... .+..+|.+||+|.++-....
T Consensus 76 a~~La~~i~~~~pdlVL~g~ts~G~~laprlAa~L~~~~vtdv~~l 121 (320)
T 1o97_D 76 EASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIV 121 (320)
T ss_dssp HHHHHHHHHHHCCSEEEEECSHHHHTTHHHHHHTSSCEEEEEECEE
T ss_pred HHHHHHHHHhcCCCEEEEeCCCchhhHHHHHHHHhCCCccccEEEE
Confidence 35567778888999999885432 36788999999999977653
No 231
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=27.02 E-value=65 Score=25.59 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=21.6
Q ss_pred cCCCEEEEcCCch--hHHHHHHH---------cCCCeEEEechh
Q 044441 15 LKPTLVMYDLFQP--WAAEAAYQ---------YHIAAVLFLTIS 47 (333)
Q Consensus 15 ~~pD~vv~D~~~~--~~~~~A~~---------lgiP~v~~~~~~ 47 (333)
.+||+||.|..++ .|..+++. ..+|.|.++...
T Consensus 118 ~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~ 161 (206)
T 3mm4_A 118 LPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHD 161 (206)
T ss_dssp CSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCC
Confidence 3899999995433 35444433 358998887643
No 232
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=26.90 E-value=51 Score=32.09 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=31.1
Q ss_pred cCCCEEEEc-CCchhHHHHHHHcCCCeEEEechhHHHHHh
Q 044441 15 LKPTLVMYD-LFQPWAAEAAYQYHIAAVLFLTISAVAGSY 53 (333)
Q Consensus 15 ~~pD~vv~D-~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 53 (333)
.+|++|++| ...+.....|+++++|.+.+....+...+.
T Consensus 355 ~~p~~i~~D~HP~y~st~~a~~~~~~~~~vQHHhAH~~a~ 394 (657)
T 3ttc_A 355 FTPQYVVHDAHPGYVSCQWASEMNLPTQTVLHHHAHAAAC 394 (657)
T ss_dssp CCCSEEEEESCTTCHHHHHHTTSCSCEEEECHHHHHHHHH
T ss_pred CCCCEEEEcCCCCchHHHHHHHcCCCeEEeeHHHHHHHHH
Confidence 489999999 446667778899999999988877766553
No 233
>3o7i_A OHCU decarboxylase; lyase; 1.50A {Klebsiella pneumoniae subsp} PDB: 3o7h_A 3o7j_A* 3o7k_A
Probab=26.61 E-value=1.5e+02 Score=23.65 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=40.6
Q ss_pred hhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Q 044441 274 QSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSER 330 (333)
Q Consensus 274 Q~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~ 330 (333)
+..|+.+-++.|.-.++. -...+.++|.+++++=|.++...+.+..+.++.+.
T Consensus 126 ~~LN~~Ye~kFGfpFVi~----v~G~s~~~IL~~l~~Rl~nd~e~E~~~Al~Ev~kI 178 (189)
T 3o7i_A 126 REGNARYEARFGRVFLIR----AKGRSGEEILQALTRRLQHTADEEVAEALAQLREI 178 (189)
T ss_dssp HHHHHHHHHHHSSCCCCC----CTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCceEEe----cCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 556999999999988886 35568999999999888865556677666666554
No 234
>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}
Probab=26.59 E-value=95 Score=26.79 Aligned_cols=70 Identities=11% Similarity=0.033 Sum_probs=38.9
Q ss_pred ccCCCCeeecCcCcCCCCCCCChhHHHHhhcCCCCCeEEEEEecCcc---cCCHHHHHHHHHHHhcCCCcEEEEEec
Q 044441 126 SLMENEIVPVGPLVQESIFKEDDTKIMDWLSQKEPWSVVFVSFGSEY---FLSKDEMHEIASGLLLSEVSFIRVLRL 199 (333)
Q Consensus 126 ~~~~~~~~~vGpl~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~---~~~~~~~~~~~~~l~~~~~~~i~~~~~ 199 (333)
...|.++..+|-+..... ....+++..+++... ++-|.+|+.. ......+..+.+.+.+.+..+++..+.
T Consensus 105 ~~~p~r~~~~~~l~~~~~-~~a~~el~~~~~~~g---~~Gv~l~~~~~~~~l~d~~~~~~~~~~~e~~lpv~iH~~~ 177 (336)
T 2wm1_A 105 VSYPRRFVGLGTLPMQAP-ELAVKEMERCVKELG---FPGVQIGTHVNEWDLNAQELFPVYAAAERLKCSLFVHPWD 177 (336)
T ss_dssp HHSTTTEEEEECCCTTSH-HHHHHHHHHHHHTSC---CSEEEEESEETTEETTCGGGHHHHHHHHHHTCEEEEECCS
T ss_pred HhccCceeEEEeCCCcCH-HHHHHHHHHHHHccC---CeEEEECCcCCCCCCCCccHHHHHHHHHHcCCEEEECCCC
Confidence 345656666665533210 012355666664433 3333344432 234567888889998888887776653
No 235
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=26.46 E-value=74 Score=22.82 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHH-------cCCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQ-------YHIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~-------lgiP~v~~~~~~ 47 (333)
.+..+.++..+||+||.|...+ .+..+++. -++|+|.++...
T Consensus 44 ~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 94 (143)
T 3cnb_A 44 FDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGAL 94 (143)
T ss_dssp HHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSC
T ss_pred HHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCC
Confidence 4556667778899999995432 34444433 246778776543
No 236
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=26.42 E-value=58 Score=27.28 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=25.4
Q ss_pred HHHHHhhc--CCCEEEEcC--CchhHHHHHHHcCCCeEEE
Q 044441 8 FCNILETL--KPTLVMYDL--FQPWAAEAAYQYHIAAVLF 43 (333)
Q Consensus 8 l~~~l~~~--~pD~vv~D~--~~~~~~~~A~~lgiP~v~~ 43 (333)
+.+.+++. ++|+|+.=. -.+.+..+|+.+++|++.+
T Consensus 90 la~~i~~~~~~~DvIvg~~~gGi~~A~~lA~~L~~p~~~v 129 (243)
T 3dez_A 90 FVETIKEAFPEVEVIAGTATAGIPHGAIIADKMNLPLAYI 129 (243)
T ss_dssp HHHHHHHHCTTCCEEEEETTTTHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHhhCCCCCEEEEecCchHHHHHHHHHHcCCCEEEE
Confidence 33444444 789998542 3477888999999998764
No 237
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} SCOP: c.56.2.1 PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A* 4g89_A*
Probab=26.39 E-value=82 Score=25.74 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=31.1
Q ss_pred HHHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechh
Q 044441 8 FCNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 8 l~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
..+.+++.-+++..+|+-+.+-..+|+.+|+|++.+...+
T Consensus 159 ~~~~l~~~~~ga~~veME~aa~a~va~~~~ip~~~ir~IS 198 (234)
T 3o4v_A 159 GLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAIS 198 (234)
T ss_dssp HHHHHHHHCTTEEEEESSHHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHHHHHcCCccEeehhHHHHHHHHHHhCCCEEEEEEEe
Confidence 3344554447899999888888899999999999987654
No 238
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=26.29 E-value=50 Score=25.75 Aligned_cols=29 Identities=24% Similarity=0.083 Sum_probs=19.0
Q ss_pred CCCEEEEcC---CchhHHHHHHHcC--CCeEEEe
Q 044441 16 KPTLVMYDL---FQPWAAEAAYQYH--IAAVLFL 44 (333)
Q Consensus 16 ~pD~vv~D~---~~~~~~~~A~~lg--iP~v~~~ 44 (333)
-||+|+.|. ..-.+..+.+.+| ||.+.+.
T Consensus 79 ~PDLilIDGGkgQl~aA~~vl~elg~~i~v~glA 112 (159)
T 2nrr_A 79 LPNLLFVDGGIGQVNAAIEALKEIGKDCPVVGLA 112 (159)
T ss_dssp CCSEEEESSCHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCccEEEEE
Confidence 499999994 2344555556777 6666654
No 239
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=26.28 E-value=50 Score=26.62 Aligned_cols=41 Identities=10% Similarity=0.209 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-----CCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-----HIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-----giP~v~~~~~ 46 (333)
.+..+.++..+||+||.|...+ .|..+++.+ ++|.|.++..
T Consensus 37 ~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~ 84 (225)
T 3c3w_A 37 AEAMARVPAARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSY 84 (225)
T ss_dssp HHHHHHHHHHCCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEGGGS
T ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEECC
Confidence 3455666777899999995433 355554433 5787776544
No 240
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A*
Probab=26.01 E-value=58 Score=27.09 Aligned_cols=36 Identities=6% Similarity=-0.021 Sum_probs=25.3
Q ss_pred HHHHHhhc--CCCEEEEcC--CchhHHHHHHHcCCCeEEE
Q 044441 8 FCNILETL--KPTLVMYDL--FQPWAAEAAYQYHIAAVLF 43 (333)
Q Consensus 8 l~~~l~~~--~pD~vv~D~--~~~~~~~~A~~lgiP~v~~ 43 (333)
+.+.+++. ++|+|+.=. -.+.+..+|+.+|+|++.+
T Consensus 78 la~~i~~~~~~~D~Ivg~~~gGi~~a~~lA~~L~~p~~~v 117 (234)
T 3m3h_A 78 LEELIKEHFPTVEVIAGTATAGIAHAAWVSDRMDLPMCYV 117 (234)
T ss_dssp HHHHHHHHCTTCCEEEEC---CHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHhCCCCCEEEEeccchHHHHHHHHHHcCCCEEEE
Confidence 34444444 789998652 2577888999999998764
No 241
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=25.87 E-value=78 Score=24.80 Aligned_cols=101 Identities=18% Similarity=0.070 Sum_probs=51.8
Q ss_pred hHHHHhhcCCCCCeEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEE
Q 044441 149 TKIMDWLSQKEPWSVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLV 228 (333)
Q Consensus 149 ~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 228 (333)
.++-++|.... ..+|+.|..+ ......++..+.+-+++=++....... +..+.. .-...+.
T Consensus 23 ~~lg~~La~~g---~~lV~Ggg~G-----iM~aa~~gAl~~gG~tiGV~~~~~~p~----e~~~~~-------~~~~~~~ 83 (171)
T 1weh_A 23 VRYGEVLAEEG---FGLACGGYQG-----GMEALARGVKAKGGLVVGVTAPAFFPE----RRGPNP-------FVDLELP 83 (171)
T ss_dssp HHHHHHHHHTT---EEEEECCSST-----HHHHHHHHHHHTTCCEEECCCGGGCTT----SCSSCT-------TCSEECC
T ss_pred HHHHHHHHHCC---CEEEeCChhh-----HHHHHHHHHHHcCCcEEEEeccccCcc----cccccC-------CCceeee
Confidence 44556666542 7788887643 666666766666655554433200000 001110 0001112
Q ss_pred eccccch-hhccccccceeEeecCchhHHHH---HH-------hCcceeccc
Q 044441 229 QGWVPQA-KILRHGRIGGFLSHCGWGSAVEG---MV-------FGVPIIAMP 269 (333)
Q Consensus 229 ~~~~p~~-~ll~~~~~~~~I~hgG~~s~~ea---l~-------~GvP~i~~P 269 (333)
....+.. .++...+-..++--||.||+-|. +. +++| +.+-
T Consensus 84 ~~~f~~Rk~~~~~~sda~ivlpGG~GTl~El~e~lt~~q~g~~~~kP-vll~ 134 (171)
T 1weh_A 84 AATLPQRIGRLLDLGAGYLALPGGVGTLAELVLAWNLLYLRRGVGRP-LAVD 134 (171)
T ss_dssp CSSHHHHHHHHHHHEEEEEECSCCHHHHHHHHHHHHHHHTCSSCSCC-EEEC
T ss_pred cCCHHHHHHHHHHhCCEEEEeCCCccHHHHHHHHHHHHHhCccCCCe-EEEC
Confidence 3344443 33332333457788889997665 44 7899 7774
No 242
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=25.81 E-value=74 Score=23.93 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCEEEEcCCc--hhHHHHHH----HcCCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQ--PWAAEAAY----QYHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~--~~~~~~A~----~lgiP~v~~~~~ 46 (333)
.+..+.+++.+||+||.|... ..+..+++ ...+|.|.++..
T Consensus 61 ~~al~~l~~~~~dlvilD~~l~~~~g~~l~~~lr~~~~~~ii~~s~~ 107 (164)
T 3t8y_A 61 LEAVEKAIELKPDVITMDIEMPNLNGIEALKLIMKKAPTRVIMVSSL 107 (164)
T ss_dssp HHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHSCCEEEEEESS
T ss_pred HHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEecC
Confidence 445566777799999999442 23444443 334777776653
No 243
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=25.68 E-value=1e+02 Score=26.07 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=25.2
Q ss_pred CCCEEE-EcC-CchhHHHHHHHcCCCeEEEechhH
Q 044441 16 KPTLVM-YDL-FQPWAAEAAYQYHIAAVLFLTISA 48 (333)
Q Consensus 16 ~pD~vv-~D~-~~~~~~~~A~~lgiP~v~~~~~~~ 48 (333)
.||+|| .|. ...-+..=|.++|||.|.++-+.+
T Consensus 158 ~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivDTn~ 192 (256)
T 2vqe_B 158 LPDAIFVVDPTKEAIAVREARKLFIPVIALADTDS 192 (256)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHTTCCCEECCCTTS
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 699777 564 345677888999999999886643
No 244
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=25.56 E-value=22 Score=28.73 Aligned_cols=50 Identities=8% Similarity=0.146 Sum_probs=34.5
Q ss_pred cccceeEeecCchhHHHHHHhCcceecccccc-chhhHHHHHhHh--CeeeEee
Q 044441 241 GRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVY-EQSRNAKVVVDI--GMGMDVP 291 (333)
Q Consensus 241 ~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~-DQ~~na~~~~~~--G~g~~l~ 291 (333)
..++++|+.||........ ..+|+|-++..+ |=..--..+.+. .+|++--
T Consensus 50 ~~~dVIISRGgta~~lr~~-~~iPVV~I~~s~~Dil~al~~a~~~~~kIavvg~ 102 (196)
T 2q5c_A 50 DEVDAIISRGATSDYIKKS-VSIPSISIKVTRFDTMRAVYNAKRFGNELALIAY 102 (196)
T ss_dssp TTCSEEEEEHHHHHHHHTT-CSSCEEEECCCHHHHHHHHHHHGGGCSEEEEEEE
T ss_pred CCCeEEEECChHHHHHHHh-CCCCEEEEcCCHhHHHHHHHHHHhhCCcEEEEeC
Confidence 3556699999999988875 579999999864 544444444444 2555553
No 245
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=25.33 E-value=1e+02 Score=24.05 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHH----cCCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQ----YHIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~----lgiP~v~~~~~~ 47 (333)
.+..+.++..+||+||.|...+ .|..+++. ...|+|.++...
T Consensus 48 ~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~lt~~~ 95 (205)
T 1s8n_A 48 QEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFS 95 (205)
T ss_dssp HHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEEEEGG
T ss_pred HHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEecCC
Confidence 3455566777899999995433 35544443 246888876554
No 246
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN, alpha and beta proteins, hydrolase; HET: FMC; 1.70A {Staphylococcus aureus}
Probab=25.29 E-value=1.1e+02 Score=24.80 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=29.1
Q ss_pred HHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechh
Q 044441 9 CNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 9 ~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
.++.+.+ |.+..+|+-..+-..+|+.+|+|++.+...+
T Consensus 160 ~~l~~~~-~g~~~veME~a~~~~~a~~~~~~~~~ir~Is 197 (230)
T 3bl6_A 160 QKIKKAF-PNAMAVEMEATAIAQTCYQFNVPFVVVRAVS 197 (230)
T ss_dssp HHHHHHC-TTEEEEESSHHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHHhC-CCcEEEEchHHHHHHHHHHcCCCEEEEEEec
Confidence 3344444 6899999887788889999999999877543
No 247
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=25.19 E-value=73 Score=31.64 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=31.0
Q ss_pred cCCCEEEEc-CCchhHHHHHHHcCCCeEEEechhHHHHHh
Q 044441 15 LKPTLVMYD-LFQPWAAEAAYQYHIAAVLFLTISAVAGSY 53 (333)
Q Consensus 15 ~~pD~vv~D-~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 53 (333)
.+|++|++| ...+.....|+++++|.+.+....+...+.
T Consensus 452 ~~p~~i~~D~HP~y~st~~a~~~~~p~~~VQHHhAH~as~ 491 (761)
T 3vth_A 452 VDPEVVAHDMHKGYLSTQYAKSLDLPKIEVQHHHAHIASC 491 (761)
T ss_dssp CCCSEEEEESCTTSHHHHHHHHSSSCEEEECHHHHHHHHH
T ss_pred CCCCEEEEeCCCCchHHHHHHhcCCCeEEecHHHHHHHHH
Confidence 489999999 446667778899999999988777666553
No 248
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase; transition state, inhibitor, hydrolase; HET: MTM; 1.60A {Streptococcus pneumoniae R6} PDB: 3mms_A*
Probab=25.18 E-value=1.2e+02 Score=24.58 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=29.0
Q ss_pred HHHHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechh
Q 044441 9 CNILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 9 ~~~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
.++.+.+ |.+..+|+-+.+-..+|+.+|+|++.+...+
T Consensus 159 ~~l~~~~-~g~~~veME~aa~~~~a~~~~~~~~~ir~Is 196 (230)
T 1zos_A 159 EAIKSHF-PEVLAVEMEGAAIAQAAHTLNLPVLVIRAMS 196 (230)
T ss_dssp HHHHHHC-TTEEEEESSHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHhC-CCCcEehhhHHHHHHHHHHcCCCEEEEEEec
Confidence 3344443 6899999888888899999999999877543
No 249
>1efd_N Ferrichrome-binding periplasmic protein; periplasmic binding protein-siderophore complex, FHUD complex with gallichrome; HET: GCR; 1.90A {Escherichia coli} SCOP: c.92.2.1 PDB: 1k7s_N* 1k2v_N* 1esz_A*
Probab=25.12 E-value=51 Score=27.46 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=21.3
Q ss_pred HhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEe
Q 044441 12 LETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFL 44 (333)
Q Consensus 12 l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~ 44 (333)
|...+||+||..........-.++.| |++.+.
T Consensus 62 i~~l~PDLIi~~~~~~~~~~~L~~i~-pvv~~~ 93 (266)
T 1efd_N 62 LTEMKPSFMVWSAGYGPSPEMLARIA-PGRGFN 93 (266)
T ss_dssp HHHHCCSEEEEETTSSSCHHHHHHHS-CEEEEC
T ss_pred HHhcCCCEEEeccccHHHHHHHHhhC-CEEEec
Confidence 44469999998643333344556778 998875
No 250
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=24.99 E-value=1.4e+02 Score=26.28 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=24.0
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcEEEEEec
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSFIRVLRL 199 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 199 (333)
.+++++.|+.+. ......++++|.+.|..+.+.+..
T Consensus 22 rIl~~~~~~~Gh--~~~~~~la~~L~~~GheV~v~~~~ 57 (412)
T 3otg_A 22 RVLFASLGTHGH--TYPLLPLATAARAAGHEVTFATGE 57 (412)
T ss_dssp EEEEECCSSHHH--HGGGHHHHHHHHHTTCEEEEEECG
T ss_pred EEEEEcCCCccc--HHHHHHHHHHHHHCCCEEEEEccH
Confidence 377777665432 222456888888889998887764
No 251
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=24.88 E-value=26 Score=29.13 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=31.8
Q ss_pred ccceeEeecCchhHHHHHHhCcceecccccc-chhhHHHHHhHh--CeeeEe
Q 044441 242 RIGGFLSHCGWGSAVEGMVFGVPIIAMPMVY-EQSRNAKVVVDI--GMGMDV 290 (333)
Q Consensus 242 ~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~-DQ~~na~~~~~~--G~g~~l 290 (333)
.++++|+.||........ ..+|+|-++..+ |=..--..+.+. .+|++-
T Consensus 63 ~~dVIISRGgta~~Lr~~-~~iPVV~I~vs~~Dil~aL~~a~~~~~kIavVg 113 (225)
T 2pju_A 63 RCDAIIAAGSNGAYLKSR-LSVPVILIKPSGYDVLQFLAKAGKLTSSIGVVT 113 (225)
T ss_dssp CCSEEEEEHHHHHHHHTT-CSSCEEEECCCHHHHHHHHHHTTCTTSCEEEEE
T ss_pred CCeEEEeCChHHHHHHhh-CCCCEEEecCCHHHHHHHHHHHHhhCCcEEEEe
Confidence 355699999999998875 579999999864 433333333333 355554
No 252
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=24.73 E-value=81 Score=26.21 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=24.0
Q ss_pred CCCEEE-EcC-CchhHHHHHHHcCCCeEEEechh
Q 044441 16 KPTLVM-YDL-FQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 16 ~pD~vv-~D~-~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
.||+|| .|+ ...-+..=|.++|||.|.++-+.
T Consensus 157 ~Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDTn 190 (231)
T 3bbn_B 157 LPDIVIIVDQQEEYTALRECITLGIPTICLIDTN 190 (231)
T ss_dssp CCSEEEESCTTTTHHHHHHHHTTTCCEEECCCSS
T ss_pred CCCEEEEeCCccccHHHHHHHHhCCCEEEEecCC
Confidence 499877 554 34557777899999999987654
No 253
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=24.47 E-value=3.5e+02 Score=23.55 Aligned_cols=28 Identities=21% Similarity=0.119 Sum_probs=18.3
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcE
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSF 193 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~ 193 (333)
.+++|+.|+.. ....+..+.|++.|.++
T Consensus 218 dv~iia~Gs~~----~~a~~Aa~~L~~~Gi~v 245 (341)
T 2ozl_B 218 HITVVSHSRPV----GHCLEAAAVLSKEGVEC 245 (341)
T ss_dssp SEEEEECSTHH----HHHHHHHHHHHTTTCCE
T ss_pred CEEEEEeCHHH----HHHHHHHHHHHhcCCCe
Confidence 38999999975 34555556666655543
No 254
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=24.33 E-value=47 Score=27.93 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=22.4
Q ss_pred hcCCCEEEEcC---------C----chhHHHHHHHcCCCeEEEech
Q 044441 14 TLKPTLVMYDL---------F----QPWAAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 14 ~~~pD~vv~D~---------~----~~~~~~~A~~lgiP~v~~~~~ 46 (333)
..+||+||+-. . +.+|+.-|..+|||.|.++..
T Consensus 85 ~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~ 130 (244)
T 2e6c_A 85 FGPVDLVLSGVNLGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFSVP 130 (244)
T ss_dssp SCSCCEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CCCCCEEEECCccCCCCCcCeechHhHHHHHHHHhcCCCeEEEecc
Confidence 45899999741 1 233444456699999999753
No 255
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate, allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1 PDB: 2o73_A* 2o74_A*
Probab=23.92 E-value=1.5e+02 Score=23.31 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=40.7
Q ss_pred hhhHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Q 044441 274 QSRNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHVLLQEEGKQIRRKAKEMSER 330 (333)
Q Consensus 274 Q~~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~ 330 (333)
+..|+.+-++.|.=.++. -...+.++|.+++++=|.++...+.+..+.++.+.
T Consensus 105 ~~lN~~Y~~kFGfpFvi~----v~g~s~~~IL~~l~~Rl~n~~~~E~~~a~~ev~kI 157 (174)
T 2o70_A 105 YRLNSEYKERFGFPFVIC----ARLNNKADIVRQLSERLKNRRTAELECAIEEVKKI 157 (174)
T ss_dssp HHHHHHHHHHHSSCCCCC----GGGCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEe----eCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456999999999888886 35578899999999988865566777777766654
No 256
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=23.62 E-value=45 Score=32.78 Aligned_cols=92 Identities=10% Similarity=0.063 Sum_probs=56.5
Q ss_pred ccccchhhccccccceeEeecCchhHHHHHHhCcceeccccccchhhHHHHHhHhCeeeEeecCc-cCCCcCHHHHHHHH
Q 044441 230 GWVPQAKILRHGRIGGFLSHCGWGSAVEGMVFGVPIIAMPMVYEQSRNAKVVVDIGMGMDVPRDK-INQRLRREEVARVI 308 (333)
Q Consensus 230 ~~~p~~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~G~g~~l~~~~-~~~~~~~~~l~~ai 308 (333)
.+..-.++|..+++ +||-- ...+.|.+..++|+|......|++.+- ..|.=....... ..-..+.++|.++|
T Consensus 605 ~~~di~~ll~~aD~--lITDy-SSv~fD~~~l~kPiif~~~D~~~Y~~~----~rg~y~d~~~~~pg~~~~~~~eL~~~i 677 (729)
T 3l7i_A 605 NYNDVSELFLISDC--LITDY-SSVMFDYGILKRPQFFFAYDIDKYDKG----LRGFYMNYMEDLPGPIYTEPYGLAKEL 677 (729)
T ss_dssp TCSCHHHHHHTCSE--EEESS-CTHHHHHGGGCCCEEEECTTTTTTTSS----CCSBSSCTTSSSSSCEESSHHHHHHHH
T ss_pred CCcCHHHHHHHhCE--EEeec-hHHHHhHHhhCCCEEEecCCHHHHhhc----cCCcccChhHhCCCCeECCHHHHHHHH
Confidence 34445578887776 99986 578999999999999997766766441 122211111000 01124778888888
Q ss_pred HHHhcCcchHHHHHHHHHHHHH
Q 044441 309 KHVLLQEEGKQIRRKAKEMSER 330 (333)
Q Consensus 309 ~~vl~~~~~~~~~~~a~~l~~~ 330 (333)
...... ...++++.++..+.
T Consensus 678 ~~~~~~--~~~~~~~~~~~~~~ 697 (729)
T 3l7i_A 678 KNLDKV--QQQYQEKIDAFYDR 697 (729)
T ss_dssp TTHHHH--HHHTHHHHHHHHHH
T ss_pred hhhhcc--chhHHHHHHHHHHH
Confidence 877642 24555655555544
No 257
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=23.59 E-value=96 Score=25.30 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=24.3
Q ss_pred CCCEEE-EcC-CchhHHHHHHHcCCCeEEEechh
Q 044441 16 KPTLVM-YDL-FQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 16 ~pD~vv-~D~-~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
.||++| .|. ...-+..=|.++|||.|.++-+.
T Consensus 115 ~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn 148 (208)
T 1vi6_A 115 EPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSN 148 (208)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTT
T ss_pred CCCEEEEECCCcchhHHHHHHHhCCCEEEEeCCC
Confidence 599776 564 34557777899999999998664
No 258
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=23.49 E-value=95 Score=26.90 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-------CCCeEEEechh
Q 044441 7 AFCNILETLKPTLVMYDLFQP--WAAEAAYQY-------HIAAVLFLTIS 47 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-------giP~v~~~~~~ 47 (333)
+..+.+...+||+||.|..++ -|..+.+.+ .+|+|.++...
T Consensus 54 ~al~~~~~~~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ii~~s~~~ 103 (358)
T 3bre_A 54 QAVAVANQIKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKE 103 (358)
T ss_dssp HHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCEEEEESSC
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCcEEEEeCCC
Confidence 444566777999999995443 456555543 47888876543
No 259
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=23.49 E-value=78 Score=26.06 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=23.8
Q ss_pred CCCEE-EEcCC-chhHHHHHHHcCCCeEEEechh
Q 044441 16 KPTLV-MYDLF-QPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 16 ~pD~v-v~D~~-~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
.||+| |.|+. ..-+..=|.++|||.|.++-+.
T Consensus 149 ~Pdllvv~Dp~~e~~ai~Ea~~l~IP~IalvDTn 182 (218)
T 3r8n_B 149 LPDALFVIDADHEHIAIKEANNLGIPVFAIVDTN 182 (218)
T ss_dssp CCCSCEEEETGGGHHHHHHHHHHTCCCEEECCSS
T ss_pred CCCeEEecCcccccHHHHHHHHhCCCEEEEEeCc
Confidence 59865 46753 4556777899999999988664
No 260
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=23.45 E-value=62 Score=21.39 Aligned_cols=30 Identities=10% Similarity=0.113 Sum_probs=22.8
Q ss_pred CCCcCHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 044441 296 NQRLRREEVARVIKHVLLQEEGKQIRRKAKEM 327 (333)
Q Consensus 296 ~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l 327 (333)
....+.++|..||+.|.++ .-++...|+..
T Consensus 11 yr~Yte~~L~~Ai~aVr~g--~mS~~~Aak~y 40 (70)
T 2cob_A 11 YRQYNSEILEEAISVVMSG--KMSVSKAQSIY 40 (70)
T ss_dssp SCCCCHHHHHHHHHHHHTT--SSCHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHcC--CccHHHHHHHh
Confidence 5679999999999999883 14666666553
No 261
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=23.06 E-value=25 Score=29.77 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=21.3
Q ss_pred hcCCCEEEEcC---------CchhHHHHH----HHcCCCeEEEec
Q 044441 14 TLKPTLVMYDL---------FQPWAAEAA----YQYHIAAVLFLT 45 (333)
Q Consensus 14 ~~~pD~vv~D~---------~~~~~~~~A----~~lgiP~v~~~~ 45 (333)
..+||+||+-. ..++|...| ..+|||.|.++.
T Consensus 82 ~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 126 (254)
T 2v4n_A 82 RPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSL 126 (254)
T ss_dssp SSCCSEEEEEEEESCCCGGGGGGCHHHHHHHTTTTSSSCEEEEEE
T ss_pred CCCCCEeeeCCcCCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 35899999741 234444333 448999999975
No 262
>3dp9_A MTA/SAH nucleosidase; vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocystei nucleosidase, butylthio dadme immucillin A, MTAN, hydrolase; HET: BIG; 2.30A {Vibrio cholerae} SCOP: c.56.2.1
Probab=22.91 E-value=1.1e+02 Score=25.00 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=28.8
Q ss_pred HHhhcCCCEEEEcCCchhHHHHHHHcCCCeEEEechh
Q 044441 11 ILETLKPTLVMYDLFQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 11 ~l~~~~pD~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
.+++.-|++..+|+-+.+-..+|+.+|+|++.+...+
T Consensus 161 ~l~~~~~g~~~veME~aa~a~~a~~~~ip~~~ir~IS 197 (231)
T 3dp9_A 161 FIRQHFPSVVAVEMEASAIAQTCHQFKVPFVVVRAIS 197 (231)
T ss_dssp HHHHHCTTEEEEESSHHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHhcCCCcEEechHHHHHHHHHHcCCCEEEEEEEe
Confidence 3333235899999888888899999999999987654
No 263
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=22.91 E-value=87 Score=25.85 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHH-----cCCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQ-----YHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~-----lgiP~v~~~~~ 46 (333)
.+..+.+++.+||+||.|..++ -|..+++. -.+|.|.++..
T Consensus 163 ~eal~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~~ 210 (254)
T 2ayx_A 163 VDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTAN 210 (254)
T ss_dssp HHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEESS
T ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECC
Confidence 3445566777899999994432 24444433 36898887654
No 264
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=22.89 E-value=78 Score=28.11 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCCEEEEcCCch--hHHHHHHHc-----CCCeEEEechh
Q 044441 6 PAFCNILETLKPTLVMYDLFQP--WAAEAAYQY-----HIAAVLFLTIS 47 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~--~~~~~A~~l-----giP~v~~~~~~ 47 (333)
.+..+.+++.+||+||.|..++ -|..+++.+ .+|.|.++...
T Consensus 39 ~~al~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~lt~~~ 87 (394)
T 3eq2_A 39 LQGLQIFESEQPDLVICDLRMPQIDGLELIRRIRQTASETPIIVLSGAG 87 (394)
T ss_dssp HHHHHHHHHSCCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEEC---C
T ss_pred HHHHHHHhhCCCCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEEEEcCC
Confidence 3445566778999999995433 355555443 58998877553
No 265
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=22.65 E-value=1.1e+02 Score=16.94 Aligned_cols=29 Identities=3% Similarity=0.194 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 302 EEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 302 ~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
.++.+++.+++.. +..+...+.+++..+.
T Consensus 4 nQLEdkVEeLl~~--~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 4 KQLADAVEELASA--NYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--hHHHHHHHHHHHHHhc
Confidence 3577888888863 5678888888888764
No 266
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=22.53 E-value=86 Score=29.13 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCCEEEEcCCchh-------------------HHHHHHHcCCCeEEEech
Q 044441 7 AFCNILETLKPTLVMYDLFQPW-------------------AAEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~~~~-------------------~~~~A~~lgiP~v~~~~~ 46 (333)
.+++++++.++++||.|++... -..+|+.+|+|++.++..
T Consensus 345 ~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~ 403 (503)
T 1q57_A 345 KLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 403 (503)
T ss_dssp HHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcC
Confidence 4445556678999999965321 124678899999987644
No 267
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=22.15 E-value=1.1e+02 Score=16.80 Aligned_cols=29 Identities=0% Similarity=0.079 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 302 EEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 302 ~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
.++.+.+.+++.. +..+...+.+++.++.
T Consensus 3 nQLEdKvEeLl~~--~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 3 KXIEXKLXEIXSK--XYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHH--hhHHHHHHHHHHHHHc
Confidence 3567788888863 5678888999988764
No 268
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=22.07 E-value=1.3e+02 Score=21.92 Aligned_cols=34 Identities=18% Similarity=0.109 Sum_probs=21.6
Q ss_pred hcCCCEEEEcCCc--hhHHHHHHH-------cCCCeEEEechh
Q 044441 14 TLKPTLVMYDLFQ--PWAAEAAYQ-------YHIAAVLFLTIS 47 (333)
Q Consensus 14 ~~~pD~vv~D~~~--~~~~~~A~~-------lgiP~v~~~~~~ 47 (333)
..+||+||.|... ..|..+++. -++|.|.++...
T Consensus 57 ~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 99 (152)
T 3heb_A 57 AGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTD 99 (152)
T ss_dssp TTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCC
T ss_pred cCCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 5689999999442 234444433 357888877543
No 269
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=21.92 E-value=1.3e+02 Score=24.92 Aligned_cols=43 Identities=12% Similarity=0.031 Sum_probs=30.7
Q ss_pred hHHHHHHHhh--cCCCEEEEcCC---------chhHHHHHHHcCCCeEEEechh
Q 044441 5 KPAFCNILET--LKPTLVMYDLF---------QPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 5 ~~~l~~~l~~--~~pD~vv~D~~---------~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
.+.+.+.+++ .+.|++|+|.. .....++|+.++.|.|.+....
T Consensus 118 ~~~I~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~ 171 (242)
T 3qxc_A 118 TDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDN 171 (242)
T ss_dssp HHHHHHHHHHGGGTCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCS
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCC
Confidence 3455555553 47999999841 1245789999999999987664
No 270
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=21.56 E-value=1.1e+02 Score=16.85 Aligned_cols=29 Identities=10% Similarity=0.332 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 302 EEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 302 ~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
.++.+.+.++|.. +..+...+.++++++.
T Consensus 4 nQLEdKvEeLl~~--~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 4 KQIEDKLEEILSK--GHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHc--cHHHHHHHHHHHHHhc
Confidence 3577788888863 5678888999988764
No 271
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=21.50 E-value=2e+02 Score=24.72 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=33.6
Q ss_pred HHHhCcceeccccccch----------------hhHHHHHhHhCe-eeEeec--------CccCCCcCHHHHHHHHHHHh
Q 044441 258 GMVFGVPIIAMPMVYEQ----------------SRNAKVVVDIGM-GMDVPR--------DKINQRLRREEVARVIKHVL 312 (333)
Q Consensus 258 al~~GvP~i~~P~~~DQ----------------~~na~~~~~~G~-g~~l~~--------~~~~~~~~~~~l~~ai~~vl 312 (333)
..++|+|++.-|-+.=| ..-|......|+ |+.+.+ .|....++++++.+.++++.
T Consensus 191 ~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H~~pd~al~D~~~sl~p~el~~lv~~i~ 270 (285)
T 3sz8_A 191 ETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPDPDRARCDGPSALPLHQLEGLLSQMK 270 (285)
T ss_dssp HHTTSCCEEEETTTTCC---------------HHHHHHHHHHHCCSEEEEEEESCGGGCSCSSCCCEEGGGHHHHHHHHH
T ss_pred HhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEeccChhccCCchhhccCHHHHHHHHHHHH
Confidence 34458998886765422 334555666787 566643 12234578888877776654
No 272
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=21.25 E-value=1.1e+02 Score=25.78 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=24.5
Q ss_pred CCCEEE-EcC-CchhHHHHHHHcCCCeEEEechh
Q 044441 16 KPTLVM-YDL-FQPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 16 ~pD~vv-~D~-~~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
.||+|| .|. ...-+..=|.++|||.|.++-+.
T Consensus 151 ~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn 184 (253)
T 3bch_A 151 EPRLLVVTDPRADHQPLTEASYVNLPTIALCNTD 184 (253)
T ss_dssp SCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTT
T ss_pred CCCEEEEECCCccchHHHHHHHhCCCEEEEEcCC
Confidence 599777 564 34557778899999999998664
No 273
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=21.18 E-value=88 Score=27.60 Aligned_cols=41 Identities=10% Similarity=0.156 Sum_probs=27.3
Q ss_pred HHHHHHhhc-CCCEEEEcCCc---hhH----------------HHHHHHcCCCeEEEechh
Q 044441 7 AFCNILETL-KPTLVMYDLFQ---PWA----------------AEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 7 ~l~~~l~~~-~pD~vv~D~~~---~~~----------------~~~A~~lgiP~v~~~~~~ 47 (333)
.++++.+.. ++++||.|++. ... ..+|+.++||++.++-..
T Consensus 146 ~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~ 206 (338)
T 4a1f_A 146 QLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQLN 206 (338)
T ss_dssp HHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred HHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEecC
Confidence 344444555 79999999431 111 457888999999987543
No 274
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=20.93 E-value=46 Score=30.10 Aligned_cols=28 Identities=21% Similarity=0.468 Sum_probs=22.2
Q ss_pred cceeEeecCchhHHHHHHh----Cc-ceecccc
Q 044441 243 IGGFLSHCGWGSAVEGMVF----GV-PIIAMPM 270 (333)
Q Consensus 243 ~~~~I~hgG~~s~~eal~~----Gv-P~i~~P~ 270 (333)
++++|+-||=||++.|+.. ++ |++++..
T Consensus 115 ~DlVIvlGGDGTlL~aa~~~~~~~vpPiLGIN~ 147 (388)
T 3afo_A 115 TDLLVTLGGDGTILHGVSMFGNTQVPPVLAFAL 147 (388)
T ss_dssp CSEEEEEESHHHHHHHHHTTTTSCCCCEEEEEC
T ss_pred CCEEEEEeCcHHHHHHHHHhcccCCCeEEEEEC
Confidence 4459999999999999643 67 7888853
No 275
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A
Probab=20.74 E-value=79 Score=26.89 Aligned_cols=133 Identities=8% Similarity=-0.028 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhh-ccccccceeEeecCch
Q 044441 175 SKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKI-LRHGRIGGFLSHCGWG 253 (333)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~l-l~~~~~~~~I~hgG~~ 253 (333)
....+..+++.+++.+..++..++...+.. .....|. ....+ -.+++++.++.|||+.
T Consensus 136 ~d~~~~~~~~~a~e~glpv~iH~~~~~~~~--~~~~~p~-------------------~~~~v~~~~P~l~ivl~H~G~~ 194 (291)
T 3irs_A 136 DDRRLYPLYAFCEDNGIPVIMMTGGNAGPD--ITYTNPE-------------------HIDRVLGDFPDLTVVSSHGNWP 194 (291)
T ss_dssp TCGGGHHHHHHHHHTTCCEEEECSSSCSSS--GGGGCHH-------------------HHHHHHHHCTTCCEEEEGGGTT
T ss_pred CCHHHHHHHHHHHHcCCeEEEeCCCCCCCC--CccCCHH-------------------HHHHHHHHCCCCEEEeecCCcc
Confidence 456778888888888888877765421100 0000000 01122 2467888899999988
Q ss_pred hHHHHHHh--Ccceecccccc--c-hh---hHHHHHhHhCeeeEeecCccCCCcCHHHHHHHHHHH-hcC-cchHHHHHH
Q 044441 254 SAVEGMVF--GVPIIAMPMVY--E-QS---RNAKVVVDIGMGMDVPRDKINQRLRREEVARVIKHV-LLQ-EEGKQIRRK 323 (333)
Q Consensus 254 s~~eal~~--GvP~i~~P~~~--D-Q~---~na~~~~~~G~g~~l~~~~~~~~~~~~~l~~ai~~v-l~~-~~~~~~~~~ 323 (333)
...+++.. ..|-+.+-+.+ . .. .-...++..|.-..+-.++ ..-.+.+...+.+.++ ++. +..+-+.+|
T Consensus 195 ~~~~~~~l~~~~~nvy~~~Sg~~~~~~~~~~~~~~~~~~g~drllfgSD-~P~~~~~~~~~~~~~l~l~~e~~~~i~~~N 273 (291)
T 3irs_A 195 WVQEIIHVAFRRPNLYLSPDMYLYNLPGHADFIQAANSFLADRMLFGTA-YPMCPLKEYTEWFLTLPIKPDAMEKILHGN 273 (291)
T ss_dssp CHHHHHHHHHHCTTEEEECGGGGSSSTTHHHHHHHHTTGGGGTBCCCCC-BTSSCHHHHHHHHHTSSCCHHHHHHHHTHH
T ss_pred cHHHHHHHHhHCCCeEecHHHHhccCCCHHHHHHHHHHhCcceEEEecC-CCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 77776653 23433332211 1 11 1112344457666664333 3445566666666554 221 223456778
Q ss_pred HHHHHH
Q 044441 324 AKEMSE 329 (333)
Q Consensus 324 a~~l~~ 329 (333)
|+++=.
T Consensus 274 A~rl~~ 279 (291)
T 3irs_A 274 AERLLA 279 (291)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 887643
No 276
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.70 E-value=1.2e+02 Score=16.72 Aligned_cols=29 Identities=3% Similarity=0.127 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHhh
Q 044441 302 EEVARVIKHVLLQEEGKQIRRKAKEMSERMR 332 (333)
Q Consensus 302 ~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 332 (333)
.++.+.+.++|.. +..+...+.+++.++.
T Consensus 4 nQLEdKVEeLl~~--~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 4 XQIEXKLEXILSX--LYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh--hhHHHHHHHHHHHHHh
Confidence 3577788888863 5678888999988764
No 277
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=20.64 E-value=3.1e+02 Score=21.41 Aligned_cols=83 Identities=17% Similarity=0.115 Sum_probs=47.3
Q ss_pred EEEEEecCcc---cCCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhhhhcCchhHHHHHHhcCCCeEEeccccchhhcc
Q 044441 163 VVFVSFGSEY---FLSKDEMHEIASGLLLSEVSFIRVLRLHPDEKITIEEALPQGFAEEIERNNKGMLVQGWVPQAKILR 239 (333)
Q Consensus 163 ~v~vs~Gs~~---~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ll~ 239 (333)
+-.++.|+-. .........+.+.|.+.|..+.+...-+++. +.+.+.+ ...+.
T Consensus 6 v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~---------~~I~~~l---------------~~a~~ 61 (172)
T 3kbq_A 6 ASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDL---------DEIGWAF---------------RVALE 61 (172)
T ss_dssp EEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCH---------HHHHHHH---------------HHHHH
T ss_pred EEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCH---------HHHHHHH---------------HHHHh
Confidence 6677777642 2334566667777888888876654322111 1111111 01223
Q ss_pred ccccceeEeecCch-----hHHHHH--HhCcceeccccc
Q 044441 240 HGRIGGFLSHCGWG-----SAVEGM--VFGVPIIAMPMV 271 (333)
Q Consensus 240 ~~~~~~~I~hgG~~-----s~~eal--~~GvP~i~~P~~ 271 (333)
.+ +++||-||.| -+.|++ +.|++++..|-.
T Consensus 62 ~~--DlVittGG~g~~~~D~T~ea~a~~~~~~l~~~~e~ 98 (172)
T 3kbq_A 62 VS--DLVVSSGGLGPTFDDMTVEGFAKCIGQDLRIDEDA 98 (172)
T ss_dssp HC--SEEEEESCCSSSTTCCHHHHHHHHHTCCCEECHHH
T ss_pred cC--CEEEEcCCCcCCcccchHHHHHHHcCCCeeeCHHH
Confidence 33 4499999987 355665 468888887753
No 278
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.64 E-value=1.1e+02 Score=24.77 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=24.1
Q ss_pred CCCEEE-EcCC-chhHHHHHHHcCCCeEEEechh
Q 044441 16 KPTLVM-YDLF-QPWAAEAAYQYHIAAVLFLTIS 47 (333)
Q Consensus 16 ~pD~vv-~D~~-~~~~~~~A~~lgiP~v~~~~~~ 47 (333)
.||++| .|+. ..-+..=|.++|||.|.++.+.
T Consensus 111 ~Pdllvv~Dp~~d~~ai~EA~~l~IP~Ial~DTn 144 (202)
T 3j20_B 111 EPDVLIVTDPRADHQAMREAVEIGIPIVALVDTE 144 (202)
T ss_dssp CCSEEEESCTTTSHHHHHHHHHHTCCEEEEECTT
T ss_pred CCCeEEEeCCccchHHHHHHHHcCCCEEEEEcCC
Confidence 689776 5543 4556777889999999988665
No 279
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=20.49 E-value=45 Score=30.54 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=27.0
Q ss_pred HHHHHHHhhcCCCEEEEcCCchh-----H-----------------HHHHHHcCCCeEEEech
Q 044441 6 PAFCNILETLKPTLVMYDLFQPW-----A-----------------AEAAYQYHIAAVLFLTI 46 (333)
Q Consensus 6 ~~l~~~l~~~~pD~vv~D~~~~~-----~-----------------~~~A~~lgiP~v~~~~~ 46 (333)
..++++.++.++++||.|.+... + ..+|+.+++|++.++-.
T Consensus 300 ~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 362 (444)
T 2q6t_A 300 ARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQL 362 (444)
T ss_dssp HHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 34455556678999999954211 1 23567899999987643
No 280
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=20.42 E-value=3.9e+02 Score=22.94 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=18.5
Q ss_pred eEEEEEecCcccCCHHHHHHHHHHHhcCCCcE
Q 044441 162 SVVFVSFGSEYFLSKDEMHEIASGLLLSEVSF 193 (333)
Q Consensus 162 ~~v~vs~Gs~~~~~~~~~~~~~~~l~~~~~~~ 193 (333)
.+++|+.|+.. ....+.++.|++.|.++
T Consensus 203 dv~iva~G~~~----~~a~~Aa~~L~~~Gi~v 230 (324)
T 1w85_B 203 DITIIAYGAMV----HESLKAAAELEKEGISA 230 (324)
T ss_dssp SEEEEECTTHH----HHHHHHHHHHHHTTCCE
T ss_pred CEEEEEecHHH----HHHHHHHHHHHhcCCCE
Confidence 38999999975 34555566666556543
No 281
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=20.33 E-value=79 Score=28.97 Aligned_cols=39 Identities=8% Similarity=0.087 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCCEEEEcCCchh--------------------HHHHHHHcCCCeEEEec
Q 044441 7 AFCNILETLKPTLVMYDLFQPW--------------------AAEAAYQYHIAAVLFLT 45 (333)
Q Consensus 7 ~l~~~l~~~~pD~vv~D~~~~~--------------------~~~~A~~lgiP~v~~~~ 45 (333)
.+++++++.++++||.|.+... -..+|+.+|+|++.++-
T Consensus 304 ~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 304 KCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp HHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 3444555568999999954221 13456788999988764
No 282
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=20.03 E-value=1.1e+02 Score=25.04 Aligned_cols=37 Identities=16% Similarity=0.057 Sum_probs=21.0
Q ss_pred HHHHhhcCCCEEEEcCCchhHHH-HHHHcCCCeEEEec
Q 044441 9 CNILETLKPTLVMYDLFQPWAAE-AAYQYHIAAVLFLT 45 (333)
Q Consensus 9 ~~~l~~~~pD~vv~D~~~~~~~~-~A~~lgiP~v~~~~ 45 (333)
.+.+...++|.||.-........ .+...|+|+|.+..
T Consensus 57 ~~~l~~~~~dgiIi~~~~~~~~~~~l~~~~iPvV~~~~ 94 (277)
T 3e61_A 57 LATFVSHNCTGMISTAFNENIIENTLTDHHIPFVFIDR 94 (277)
T ss_dssp HHHHHHTTCSEEEECGGGHHHHHHHHHHC-CCEEEGGG
T ss_pred HHHHHhCCCCEEEEecCChHHHHHHHHcCCCCEEEEec
Confidence 33344557887776654333344 55666888777653
Done!