BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044442
(523 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/367 (22%), Positives = 132/367 (35%), Gaps = 90/367 (24%)
Query: 122 DQDIARRREAFGSNTYKKPPSKSLFYFVVDALKDLTILILLGCAVLSLAFGIKEHGLKEG 181
DQ + R E +G N KSL+ V++ +DL + ILL A +S
Sbjct: 27 DQ-VKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLA--------- 76
Query: 182 WYDGGS------------ILVLFGHCHFS-WKQLYTDSTI-------------------- 208
W++ G +L+L + W++ ++ I
Sbjct: 77 WFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKS 136
Query: 209 -------------------GDQVPADGLLLDGHS--LQVDESSMTGES-----------D 236
GD+VPAD +L S L+VD+S +TGES D
Sbjct: 137 VQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPD 196
Query: 237 HLEVNSSQNPFLFSGTKVADGYARMLATSVGMNTTWGQRMSQISRDNSEQTPLQARLNEL 296
VN + LFSGT +A G A + + G++T G+ Q++ ++TPLQ +L+E
Sbjct: 197 PRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEF 256
Query: 297 TSSTGKIGXXXXXXXXXXXXXRYFTGNTTDENGNQEYNGSKTKXXXXXXXXXXXXXXXXX 356
K+ + + + GS +
Sbjct: 257 GEQLSKVISLICVAVWLINIGHF---------NDPVHGGSWIR------GAIYYFKIAVA 301
Query: 357 XXXXXXPEGLPLAVTLTLAYSMKRMMADQVMVRKLSACETMGSAXXXXXXXXXXXXENRM 416
PEGLP +T LA +RM +VR L + ET+G N+M
Sbjct: 302 LAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQM 361
Query: 417 KVTKFWL 423
V K ++
Sbjct: 362 SVCKMFI 368
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 131/367 (35%), Gaps = 90/367 (24%)
Query: 122 DQDIARRREAFGSNTYKKPPSKSLFYFVVDALKDLTILILLGCAVLSLAFGIKEHGLKEG 181
DQ + R E +G N KSL+ V++ +DL + ILL A +S
Sbjct: 28 DQ-VKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLA--------- 77
Query: 182 WYDGGS------------ILVLFGHCHFS-WKQLYTDSTI-------------------- 208
W++ G +L+L + W++ ++ I
Sbjct: 78 WFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKS 137
Query: 209 -------------------GDQVPADGLLLDGHS--LQVDESSMTGES-----------D 236
GD+VPAD +L S L+VD+S +TGES D
Sbjct: 138 VQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPD 197
Query: 237 HLEVNSSQNPFLFSGTKVADGYARMLATSVGMNTTWGQRMSQISRDNSEQTPLQARLNEL 296
VN + LFSGT +A G A + + G++T G+ Q++ ++TPLQ +L+E
Sbjct: 198 PRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEF 257
Query: 297 TSSTGKIGXXXXXXXXXXXXXRYFTGNTTDENGNQEYNGSKTKXXXXXXXXXXXXXXXXX 356
K+ + + + GS +
Sbjct: 258 GEQLSKVISLICVAVWLINIGHF---------NDPVHGGSWIR------GAIYYFKIAVA 302
Query: 357 XXXXXXPEGLPLAVTLTLAYSMKRMMADQVMVRKLSACETMGSAXXXXXXXXXXXXENRM 416
PEGLP +T LA +RM +VR L + ET+G N+M
Sbjct: 303 LAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQM 362
Query: 417 KVTKFWL 423
V K ++
Sbjct: 363 SVCKMFI 369
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 131/367 (35%), Gaps = 90/367 (24%)
Query: 122 DQDIARRREAFGSNTYKKPPSKSLFYFVVDALKDLTILILLGCAVLSLAFGIKEHGLKEG 181
DQ + R E +G N KSL+ V++ +DL + ILL A +S
Sbjct: 27 DQ-VKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLA--------- 76
Query: 182 WYDGGS------------ILVLFGHCHFS-WKQLYTDSTI-------------------- 208
W++ G +L+L + W++ ++ I
Sbjct: 77 WFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKS 136
Query: 209 -------------------GDQVPADGLLLDGHS--LQVDESSMTGES-----------D 236
GD+VPAD +L S L+VD+S +TGES D
Sbjct: 137 VQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPD 196
Query: 237 HLEVNSSQNPFLFSGTKVADGYARMLATSVGMNTTWGQRMSQISRDNSEQTPLQARLNEL 296
VN + LFSGT +A G A + + G++T G+ Q++ ++TPLQ +L+E
Sbjct: 197 PRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEF 256
Query: 297 TSSTGKIGXXXXXXXXXXXXXRYFTGNTTDENGNQEYNGSKTKXXXXXXXXXXXXXXXXX 356
K+ + + + GS +
Sbjct: 257 GEQLSKVISLICVAVWLINIGHF---------NDPVHGGSWIR------GAIYYFKIAVA 301
Query: 357 XXXXXXPEGLPLAVTLTLAYSMKRMMADQVMVRKLSACETMGSAXXXXXXXXXXXXENRM 416
PEGLP +T LA +RM +VR L + ET+G N+M
Sbjct: 302 LAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQM 361
Query: 417 KVTKFWL 423
V K ++
Sbjct: 362 SVCKMFI 368
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 82/367 (22%), Positives = 130/367 (35%), Gaps = 90/367 (24%)
Query: 122 DQDIARRREAFGSNTYKKPPSKSLFYFVVDALKDLTILILLGCAVLSLAFGIKEHGLKEG 181
DQ + R E +G N KSL+ V++ +DL + ILL A +S
Sbjct: 27 DQ-VKRHLEKYGHNELPAEEGKSLWELVLEQFEDLLVRILLLAACISFVLA--------- 76
Query: 182 WYDGGS------------ILVLFGHCHFS-WKQLYTDSTI-------------------- 208
W++ G +L+L + W++ ++ I
Sbjct: 77 WFEEGEETVTAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKS 136
Query: 209 -------------------GDQVPADG--LLLDGHSLQVDESSMTGES-----------D 236
GD+VPAD L + +L+VD+S +TGES D
Sbjct: 137 VQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPD 196
Query: 237 HLEVNSSQNPFLFSGTKVADGYARMLATSVGMNTTWGQRMSQISRDNSEQTPLQARLNEL 296
VN + LFSGT +A G A + + G+ T G+ Q++ ++TPLQ +L+E
Sbjct: 197 PRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEF 256
Query: 297 TSSTGKIGXXXXXXXXXXXXXRYFTGNTTDENGNQEYNGSKTKXXXXXXXXXXXXXXXXX 356
K+ + + + GS +
Sbjct: 257 GEQLSKVISLICVAVWLINIGHF---------NDPVHGGSWIR------GAIYYFKIAVA 301
Query: 357 XXXXXXPEGLPLAVTLTLAYSMKRMMADQVMVRKLSACETMGSAXXXXXXXXXXXXENRM 416
PEGLP +T LA +RM +VR L + ET+G N+M
Sbjct: 302 LAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQM 361
Query: 417 KVTKFWL 423
V K ++
Sbjct: 362 SVCKMFI 368
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 208 IGDQVPADGLLLDGHSLQVDESSMTGESDHLEVNSSQNPFLFSGTKVADGYARMLATSVG 267
+GD +PAD LL+G L+VD+S++TGES L V +FSG+ G + + G
Sbjct: 158 LGDIIPADARLLEGDPLKVDQSALTGES--LPVTKHPGQEVFSGSTCKQGEIEAVVIATG 215
Query: 268 MNTTWGQRMSQISRDN 283
++T +G+ + N
Sbjct: 216 VHTFFGKAAHLVDSTN 231
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 363 PEGLPLAVTLTLAYSMKRMMADQVMVRKLSACETMGSAXXXXXXXXXXXXENRMKVTKFW 422
PEGL VT+ L + KRM +V+ L A ET+GS +NRM V W
Sbjct: 338 PEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMW 397
Query: 423 LGKELVKEADASSVSPNIIKLIQEGVALNTTGSVYRETS 461
+ + EAD + Q G A + T + + S
Sbjct: 398 FDNQ-IHEADTTEN--------QSGAAFDKTSATWSALS 427
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 100/266 (37%), Gaps = 77/266 (28%)
Query: 85 LAELVKMKD----LDELH-KFGGVRGVASALETDFDAGICGSDQDIARRREAF---GSNT 136
L + V M D LDELH K+G TD G+ AR +E G N+
Sbjct: 40 LKKEVSMDDHKLSLDELHNKYG----------TDLTRGLTN-----ARAKEILARDGPNS 84
Query: 137 YKKPPS-KSLFYFVVDALKDLTILILLGCAVLSLAFGIK----EHGLKEGWYDGG--SIL 189
PP+ F +IL+ +G + LA+GI+ + + Y G S +
Sbjct: 85 LTPPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTV 144
Query: 190 VLFGHCHFSWKQLYTDSTI--------------------------------------GDQ 211
V+ C FS+ Q S I GD+
Sbjct: 145 VIVTGC-FSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDR 203
Query: 212 VPADGLLLDGHSLQVDESSMTGESDHLEVN---SSQNPF-----LFSGTKVADGYARMLA 263
+PAD ++ H +VD SS+TGES+ + SS+NP F T +G AR +
Sbjct: 204 IPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVV 263
Query: 264 TSVGMNTTWGQRMSQISRDNSEQTPL 289
G T G+ + S +TP+
Sbjct: 264 VYTGDRTVMGRIATLASGLEVGRTPI 289
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 363 PEGLPLAVTLTLAYSMKRMMADQVMVRKLSACETMGSAXXXXXXXXXXXXENRMKVTKFW 422
PEGL VT+ L + KRM +V+ L A ET+GS +NRM V W
Sbjct: 302 PEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKTGTLTQNRMTVAHMW 361
Query: 423 LGKELVKEADASSVSPNIIKLIQEGVALNTTGSVY 457
+ + EAD + Q GV+ + T + +
Sbjct: 362 SDNQ-IHEADTTEN--------QSGVSFDKTSATW 387
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 100/266 (37%), Gaps = 69/266 (25%)
Query: 85 LAELVKMKD----LDELHKFGGVRGVASALETDFDAGICGSDQDIARRREAFGSNTYKKP 140
L + V M D LDELH+ G TD G+ + R+ G N P
Sbjct: 4 LKKEVSMDDHKLSLDELHRKYG---------TDLSRGLTPARAAEILARD--GPNALTPP 52
Query: 141 PSKSLFY-FVVDALKDLTILILLGCAVLSLAFGIK----EHGLKEGWYDGG--SILVLFG 193
P+ + F ++L+ +G + LA+GI+ E + Y G S +V+
Sbjct: 53 PTTPEWVKFCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIIT 112
Query: 194 HCHFSWKQLYTDSTI--------------------------------------GDQVPAD 215
C FS+ Q S I GD++PAD
Sbjct: 113 GC-FSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPAD 171
Query: 216 GLLLDGHSLQVDESSMTGESDHLEVN---SSQNPF-----LFSGTKVADGYARMLATSVG 267
++ + +VD SS+TGES+ + +++NP F T +G AR + G
Sbjct: 172 LRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTG 231
Query: 268 MNTTWGQRMSQISRDNSEQTPLQARL 293
T G+ + S QTP+ A +
Sbjct: 232 DRTVMGRIATLASGLEGGQTPIAAEI 257
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 363 PEGLPLAVTLTLAYSMKRMMADQVMVRKLSACETMGSAXXXXXXXXXXXXENRMKVTKFW 422
PEGL VT+ L + KRM +V+ L A ET+GS +NRM V W
Sbjct: 308 PEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMW 367
Query: 423 LGKELVKEADASSVSPNIIKLIQEGVALNTTGSVY 457
+ + EAD + Q GV+ + T + +
Sbjct: 368 SDNQ-IHEADTTEN--------QSGVSFDKTSATW 393
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 101/270 (37%), Gaps = 69/270 (25%)
Query: 81 DQTSLAELVKMKD----LDELHKFGGVRGVASALETDFDAGICGSDQDIARRREAFGSNT 136
D L + V M D LDELH+ G TD G+ + R+ G N
Sbjct: 6 DMDELKKEVSMDDHKLSLDELHRKYG---------TDLSRGLTPARAAEILARD--GPNA 54
Query: 137 YKKPPSKSLFY-FVVDALKDLTILILLGCAVLSLAFGIK----EHGLKEGWYDGG--SIL 189
PP+ + F ++L+ +G + LA+GI+ E + Y G S +
Sbjct: 55 LTPPPTTPEWVKFCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAV 114
Query: 190 VLFGHCHFSWKQLYTDSTI--------------------------------------GDQ 211
V+ C FS+ Q S I GD+
Sbjct: 115 VIITGC-FSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDR 173
Query: 212 VPADGLLLDGHSLQVDESSMTGESDHLEVN---SSQNPF-----LFSGTKVADGYARMLA 263
+PAD ++ + +VD SS+TGES+ + +++NP F T +G AR +
Sbjct: 174 IPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIV 233
Query: 264 TSVGMNTTWGQRMSQISRDNSEQTPLQARL 293
G T G+ + S QTP+ A +
Sbjct: 234 VYTGDRTVMGRIATLASGLEGGQTPIAAEI 263
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 363 PEGLPLAVTLTLAYSMKRMMADQVMVRKLSACETMGSAXXXXXXXXXXXXENRMKVTKFW 422
PEGL VT+ L+ + KR+ + +V+ L A ET+GS +NRM V+ W
Sbjct: 343 PEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLW 402
Query: 423 LGKEL 427
+
Sbjct: 403 FDNHI 407
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 209 GDQVPADGLLLDGHSLQVDESSMTGESD---------HLEVNSSQNPFLFSGTKVADGYA 259
GD+VPAD +L +VD SS+TGES+ H ++N FS T +G A
Sbjct: 206 GDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFS-TMCLEGTA 264
Query: 260 RMLATSVGMNTTWGQRMSQISRDNSEQTPL 289
+ L + G T G+ S S +E+TP+
Sbjct: 265 QGLVVNTGDRTIIGRIASLASGVENEKTPI 294
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 209 GDQVPADG-LLLDGHSLQVDESSMTGESDHLEVNSSQNPFLFSGTKVADGYARMLATSVG 267
G +PADG ++ D LQVD+S++TGES L V+ + +F+ + V G A ++ T+ G
Sbjct: 207 GTIIPADGRIVTDDAFLQVDQSALTGES--LAVDKHKGDQVFASSAVKRGEAFVVITATG 264
Query: 268 MNTTWGQRMSQIS 280
NT G+ + ++
Sbjct: 265 DNTFVGRAAALVN 277
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 363 PEGLPLAVTLTLAYSMKRMMADQVMVRKLSACETM 397
P GLP VT T+A + + +V+KLSA E++
Sbjct: 335 PVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESL 369
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 209 GDQVPADGLLLDGHSLQVDESSMTGESDHLEVNSSQNPFLFSGTKVADGYARMLATSVGM 268
G+++P DG++++G S VDES ++GE + V S+ +F T G ++ AT VG
Sbjct: 240 GEKIPVDGVVVEGES-YVDESMISGEP--VPVLKSKGDEVFGATINNTGVLKIRATRVGG 296
Query: 269 NTTWGQRMSQISRDNSEQTPLQ 290
T Q + + + P+Q
Sbjct: 297 ETLLAQIVKLVEDAMGSKPPIQ 318
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 209 GDQVPADGLLLDGHSLQVDESSMTGESDHLEVNSSQNPFLFSGTKVADGYARMLATSVGM 268
G+++P DG++++G S VDES ++GE + V S+ +F T G ++ AT VG
Sbjct: 162 GEKIPVDGVVVEGES-YVDESMISGEP--VPVLKSKGDEVFGATINNTGVLKIRATRVGG 218
Query: 269 NTTWGQRMSQISRDNSEQTPLQ 290
T Q + + + P+Q
Sbjct: 219 ETLLAQIVKLVEDAMGSKPPIQ 240
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 209 GDQVPADGLLLDGHSLQVDESSMTGESDHLEVNSSQNPFLFSGTKVADGYARMLATSVGM 268
G + P DG +++GHS+ VDES +TGE+ + V + +G+ +G + AT VG
Sbjct: 53 GGKFPVDGRVIEGHSM-VDESLITGEA--MPVAKKPGSTVIAGSINQNGSLLICATHVGA 109
Query: 269 NTTWGQ 274
+TT Q
Sbjct: 110 DTTLSQ 115
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 209 GDQVPADGLLLDGHSLQVDESSMTGESDHLEVNSSQNPFLFSGTKVADGYARMLATSVGM 268
G+++P DG++++G S VDES ++GE + V S+ +F T G ++ AT VG
Sbjct: 41 GEKIPVDGVVVEGESY-VDESMISGEP--VPVLKSKGDEVFGATINNTGVLKIRATRVGG 97
Query: 269 NTTWGQ 274
T Q
Sbjct: 98 ETLLAQ 103
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 363 PEGLPLAVTLTLAYSMKRMMADQVMVRKL 391
PEGLP +T LA +RM +VR L
Sbjct: 20 PEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|3D1R|A Chain A, Structure Of E. Coli Glpx With Its Substrate Fructose
1,6-Bisphosphate
Length = 337
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 209 GDQVPADGLLLDGHSLQVDESSMTGESDHLEVNSSQNPFLFSGTKVADGYARMLATSVGM 268
GD+ ADG ++ + +++ ++ G E ++ P L+ G KV G R A + +
Sbjct: 28 GDKNTADGAAVNAMRIMLNQVNIDGTIVIGEGEIAEAPMLYIGEKV--GTGRGDAVDIAV 85
Query: 269 NTTWGQRMSQISRDNS 284
+ G RM+ + + N+
Sbjct: 86 DPIEGTRMTAMGQANA 101
>pdb|2R8T|A Chain A, Crystal Structure Of The Fructose 1,6-Bisphosphatase Glpx
From E.Coli In The Complex With Fructose
1,6-Bisphosphate
pdb|3BIG|A Chain A, Crystal Structure Of The Fructose-1,6-Bisphosphatase Glpx
From E.Coli In Complex With Inorganic Phosphate
pdb|3BIH|A Chain A, Crystal Structure Of Fructose-1,6-Bisphosphatase From
E.Coli Glpx
Length = 338
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 209 GDQVPADGLLLDGHSLQVDESSMTGESDHLEVNSSQNPFLFSGTKVADGYARMLATSVGM 268
GD+ ADG ++ + +++ ++ G E ++ P L+ G KV G R A + +
Sbjct: 29 GDKNTADGAAVNAMRIMLNQVNIDGTIVIGEGEIAEAPMLYIGEKV--GTGRGDAVDIAV 86
Query: 269 NTTWGQRMSQISRDNS 284
+ G RM+ + + N+
Sbjct: 87 DPIEGTRMTAMGQANA 102
>pdb|1NI9|A Chain A, 2.0 A Structure Of Glycerol Metabolism Protein From E.
Coli
Length = 338
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 209 GDQVPADGLLLDGHSLQVDESSMTGESDHLEVNSSQNPFLFSGTKVADGYARMLATSVGM 268
GD+ ADG ++ + +++ ++ G E + P L+ G KV G R A + +
Sbjct: 29 GDKNTADGAAVNAMRIMLNQVNIDGTIVIGEGEIDEAPMLYIGEKV--GTGRGDAVDIAV 86
Query: 269 NTTWGQRMSQISRDNS 284
+ G RM+ + + N+
Sbjct: 87 DPIEGTRMTAMGQANA 102
>pdb|1EUB|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Collagenase-3 (Mmp-13) Complexed To A Potent
Non-Peptidic Sulfonamide Inhibitor
pdb|1XUC|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUC|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|3ELM|A Chain A, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3ELM|B Chain B, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3I7G|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7G|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|2YIG|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|2YIG|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|3ZXH|A Chain A, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
pdb|3ZXH|B Chain B, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
Length = 171
Score = 28.5 bits (62), Expect = 9.3, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 163 GCAVLSLAFGIKEHGLKEGWYDGGSILVLF---------GHCHFSWKQLYTDSTIGDQVP 213
G A + ++FGIKEHG +DG S L+ G HF + +T S+ G +
Sbjct: 56 GIADIMISFGIKEHG-DFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLF 114
Query: 214 ADGLLLDGHSLQVDESSMTG 233
GHSL +D S G
Sbjct: 115 LVAAHEFGHSLGLDHSKDPG 134
>pdb|2D1N|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1N|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
Length = 166
Score = 28.5 bits (62), Expect = 9.3, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 163 GCAVLSLAFGIKEHGLKEGWYDGGSILVLF---------GHCHFSWKQLYTDSTIGDQVP 213
G A + ++FGIKEHG +DG S L+ G HF + +T S+ G +
Sbjct: 56 GIADIMISFGIKEHG-DFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLF 114
Query: 214 ADGLLLDGHSLQVDESSMTG 233
GHSL +D S G
Sbjct: 115 LVAAHEFGHSLGLDHSKDPG 134
>pdb|1FLS|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1FM1|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1ZTQ|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|2E2D|A Chain A, Flexibility And Variability Of Timp Binding: X-Ray
Structure Of The Complex Between Collagenase-3MMP-13 And
Timp-2
pdb|2PJT|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
Length = 165
Score = 28.5 bits (62), Expect = 9.8, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 163 GCAVLSLAFGIKEHGLKEGWYDGGSILVLF---------GHCHFSWKQLYTDSTIGDQVP 213
G A + ++FGIKEHG +DG S L+ G HF + +T S+ G +
Sbjct: 56 GIADIMISFGIKEHG-DFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLF 114
Query: 214 ADGLLLDGHSLQVDESSMTG 233
GHSL +D S G
Sbjct: 115 LVAAHEFGHSLGLDHSKDPG 134
>pdb|3KEC|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEC|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEJ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEJ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
Length = 167
Score = 28.5 bits (62), Expect = 9.8, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 163 GCAVLSLAFGIKEHGLKEGWYDGGSILVLF---------GHCHFSWKQLYTDSTIGDQVP 213
G A + ++FGIKEHG +DG S L+ G HF + +T S+ G +
Sbjct: 56 GIADIMISFGIKEHG-DFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLF 114
Query: 214 ADGLLLDGHSLQVDESSMTG 233
GHSL +D S G
Sbjct: 115 LVAAHEFGHSLGLDHSKDPG 134
>pdb|456C|A Chain A, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|456C|B Chain B, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|830C|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|830C|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|1YOU|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
pdb|1YOU|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
Length = 168
Score = 28.5 bits (62), Expect = 9.9, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 163 GCAVLSLAFGIKEHGLKEGWYDGGSILVLF---------GHCHFSWKQLYTDSTIGDQVP 213
G A + ++FGIKEHG +DG S L+ G HF + +T S+ G +
Sbjct: 56 GIADIMISFGIKEHG-DFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLF 114
Query: 214 ADGLLLDGHSLQVDESSMTG 233
GHSL +D S G
Sbjct: 115 LVAAHEFGHSLGLDHSKDPG 134
>pdb|4A7B|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|4A7B|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|3TVC|A Chain A, Human Mmp13 In Complex With L-Glutamate Motif Inhibitor
Length = 169
Score = 28.5 bits (62), Expect = 9.9, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 163 GCAVLSLAFGIKEHGLKEGWYDGGSILVLF---------GHCHFSWKQLYTDSTIGDQVP 213
G A + ++FGIKEHG +DG S L+ G HF + +T S+ G +
Sbjct: 56 GIADIMISFGIKEHG-DFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLF 114
Query: 214 ADGLLLDGHSLQVDESSMTG 233
GHSL +D S G
Sbjct: 115 LVAAHEFGHSLGLDHSKDPG 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,980,408
Number of Sequences: 62578
Number of extensions: 477657
Number of successful extensions: 954
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 925
Number of HSP's gapped (non-prelim): 41
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)