Query 044442
Match_columns 523
No_of_seqs 423 out of 2327
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 05:16:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zxe_A Na, K-ATPase alpha subu 100.0 3.2E-65 1.1E-69 593.8 35.5 387 102-516 52-500 (1028)
2 3ixz_A Potassium-transporting 100.0 2.2E-64 7.4E-69 587.6 37.8 402 84-515 41-504 (1034)
3 3ar4_A Sarcoplasmic/endoplasmi 100.0 1.4E-63 4.8E-68 579.5 35.3 395 102-515 9-500 (995)
4 1mhs_A Proton pump, plasma mem 100.0 1.8E-58 6.1E-63 527.2 20.9 375 79-515 42-463 (920)
5 3b8c_A ATPase 2, plasma membra 100.0 2.9E-58 1E-62 525.3 -8.6 356 102-516 18-413 (885)
6 3rfu_A Copper efflux ATPase; a 100.0 8.5E-41 2.9E-45 374.8 21.5 246 204-511 247-495 (736)
7 3j08_A COPA, copper-exporting 100.0 1.5E-39 5.3E-44 361.3 19.4 231 204-488 154-387 (645)
8 3j09_A COPA, copper-exporting 100.0 2.3E-39 8E-44 364.3 17.6 230 204-487 232-464 (723)
9 2hc8_A PACS, cation-transporti 99.7 6.7E-19 2.3E-23 152.2 6.0 76 204-282 33-111 (113)
10 2kij_A Copper-transporting ATP 99.7 1.3E-18 4.6E-23 152.8 6.4 76 204-282 45-123 (124)
11 2yj3_A Copper-transporting ATP 98.1 3E-09 1E-13 104.9 0.0 47 376-422 4-50 (263)
12 3a1c_A Probable copper-exporti 98.2 1.7E-06 5.8E-11 85.9 8.3 50 376-425 8-57 (287)
13 3gwi_A Magnesium-transporting 98.1 1E-06 3.6E-11 81.1 3.6 46 468-516 32-77 (170)
14 4aqr_D Calcium-transporting AT 97.3 6.2E-05 2.1E-09 54.9 1.0 28 25-52 3-30 (57)
15 3skx_A Copper-exporting P-type 97.1 0.00018 6.1E-09 69.7 3.2 38 388-425 1-38 (280)
16 2l1w_B Vacuolar calcium ATPase 93.9 0.012 4.2E-07 36.2 0.4 24 27-50 1-25 (26)
17 4fe3_A Cytosolic 5'-nucleotida 91.5 0.059 2E-06 53.1 1.6 36 381-417 16-60 (297)
18 1svj_A Potassium-transporting 63.4 22 0.00075 31.4 7.7 87 407-521 13-100 (156)
19 2kmv_A Copper-transporting ATP 31.4 22 0.00076 32.2 2.4 15 409-423 1-15 (185)
No 1
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=100.00 E-value=3.2e-65 Score=593.84 Aligned_cols=387 Identities=22% Similarity=0.294 Sum_probs=316.8
Q ss_pred CHHHHHHHhCCCcCCCCCCCHHHHHHHHHhcCCCccCCCCCCcHHHHHHHHHhhHHHHHHHHHHHHHhhhcccc----c-
Q 044442 102 GVRGVASALETDFDAGICGSDQDIARRREAFGSNTYKKPPSKSLFYFVVDALKDLTILILLGCAVLSLAFGIKE----H- 176 (523)
Q Consensus 102 ~~~~l~~~l~t~~~~GLs~~~~~v~~r~~~~G~N~i~~~~~~~~~~~~~~~f~~~~~~ill~~ailsl~~~i~~----~- 176 (523)
+++++++.|++++++||+ ++|+++|+++||+|++++++.+++|+.++++|+++++++|++++++|++.+... +
T Consensus 52 ~~~~~~~~l~t~~~~GLs--~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~~~~~~ 129 (1028)
T 2zxe_A 52 SLDELHNKYGTDLTRGLT--NARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDE 129 (1028)
T ss_dssp CHHHHHHHHTCCSSSCBC--HHHHHHHHHHHCCSCCCCCCCCCHHHHHHTTTTSTHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CHHHHHHHhCcCccCCCC--HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 589999999999999999 789999999999999999989999999999999999999999999998875322 1
Q ss_pred CCcccccchhhhhhhhhhcc-c----ceee-----------------ec--------------CC---CCCCCeeccCeE
Q 044442 177 GLKEGWYDGGSILVLFGHCH-F----SWKQ-----------------LY--------------TD---STIGDQVPADGL 217 (523)
Q Consensus 177 g~~~~~~~~~~il~~vlvi~-~----~~~q-----------------~~--------------GD---L~~Gd~VPAD~i 217 (523)
.+..+|++++.|++++++.. . +++. ++ || |++||+|||||+
T Consensus 130 ~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~~~~~L~~l~~~~a~V~Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~ 209 (1028)
T 2zxe_A 130 PANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLR 209 (1028)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHTTSCSEEEEEETTEEEEEEGGGCCTTCEEEEETTCBCCSEEE
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEECCEEEEEEHHHCCcCCEEEECCCCEeeceEE
Confidence 11235777776655554332 1 1111 00 99 999999999999
Q ss_pred EEEecceEEeecccCCCCceeeecCCC--------CceEeeeceeecCcEEEEEEEecccchHHHHHHHhcccCCCCChH
Q 044442 218 LLDGHSLQVDESSMTGESDHLEVNSSQ--------NPFLFSGTKVADGYARMLATSVGMNTTWGQRMSQISRDNSEQTPL 289 (523)
Q Consensus 218 ll~g~~l~VDeS~LTGES~pv~k~~~~--------~~~l~~GT~v~~G~~~~~V~~tG~~T~~Gki~~~~~~~~~~~tpl 289 (523)
|++|++|.||||+|||||.|+.|.++. .|++|+||.|.+|.++++|++||.+|++|++++++.+.+.++||+
T Consensus 210 ll~g~~~~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~v~~GT~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~t~l 289 (1028)
T 2zxe_A 210 IISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDRTVMGRIATLASGLEVGRTPI 289 (1028)
T ss_dssp EEEEEEEEEECHHHHSCCSCEECCSSCCCSSTTTCSSEECTTCEEEEEEEEEEEEECGGGSHHHHHHHHHHHSCCCCCHH
T ss_pred EEeeCcEEEEcCccCCCCcceecccCCCCCCcccccceEEeCceEEcceEEEEEEEeccccHHHHHHHhccCCCCCCCcH
Confidence 999998999999999999999998643 368999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHHHhcCchHHH
Q 044442 290 QARLNELTSSTGKIGLAVAFLVLVVLLLRYFTGNTTDENGNQEYNGSKTKVDDIVNAVVGIVAATVTIIVVAIPEGLPLA 369 (523)
Q Consensus 290 q~~l~~~~~~i~~i~l~~a~l~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ilv~~vP~gLpla 369 (523)
|+.+++++..+..++++++++++++.+ +.+. .+...+..++++++++||||||++
T Consensus 290 q~~~~~~~~~l~~~~l~~~~~~~~~~~---~~~~----------------------~~~~~~~~~i~llv~~iP~~Lp~~ 344 (1028)
T 2zxe_A 290 AIEIEHFIHIITGVAVFLGVSFFILSL---ILGY----------------------SWLEAVIFLIGIIVANVPEGLLAT 344 (1028)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTC----------------------CHHHHHHHHHHHHHHHSCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HccC----------------------cHHHHHHHHHHHHHHHcCchHHHH
Confidence 999999999998888887777766542 2110 123356677889999999999999
Q ss_pred HHHHHHHHHHHHhhCCcccccchhhhhccCceEEEecCCCccccCceEEEEEEeCCeeecccccC-------CCCHHHHH
Q 044442 370 VTLTLAYSMKRMMADQVMVRKLSACETMGSATTIGTDKTGTLTENRMKVTKFWLGKELVKEADAS-------SVSPNIIK 442 (523)
Q Consensus 370 vtl~l~~~~~~m~~~~ilvr~~~~~E~lG~v~~IcsDKTGTLT~n~m~v~~~~~~~~~~~~~~~~-------~~~~~~~~ 442 (523)
+++++++++++|.++|++||+++++|+||++++||||||||||+|+|+|+++|+++..+...... .......+
T Consensus 345 vti~l~~~~~~mak~~ilvk~~~avE~Lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (1028)
T 2zxe_A 345 VTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATWS 424 (1028)
T ss_dssp HHHHHHHHHHHHHTTTEEESSTTHHHHHHHCCEEEECCCCCCBCSSCEEEEEEETTEEEECCCCTTCCSCCCCSSCHHHH
T ss_pred HHHHHHHHHHHHhhCCceeccchHhhhhcCceEEeccCCCCCCCCeEEEEEEEECCeeeeccCCCCccccccccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999887654321100 00122233
Q ss_pred HHHHHHhhccCccceeccCC---CceeEccChHHHHHHHHHHHHcCCChHHHhhccceeEEeCCCCCCceEEEEEcC
Q 044442 443 LIQEGVALNTTGSVYRETSV---SDVEFSGSPTEKAILSWAVLEMNMDMEEYSAISLAFFVISFMRKQMVKSTYNED 516 (523)
Q Consensus 443 ~l~~~i~~n~~~~~~~~~~~---~~~~~~GsptE~ALl~~a~~~lg~~~~~~~~~~~il~~~pFnS~rKrMSVIv~~ 516 (523)
.+..+.++||++......+. ...+..|||||.||++++ .+.+.+....+..|++++++||||+|||||+++++
T Consensus 425 ~l~~~~alc~~~~~~~~~~~hp~~~~~~~gdp~E~Al~~~a-~~~~~~~~~~~~~~~~~~~~pF~s~rk~msvi~~~ 500 (1028)
T 2zxe_A 425 ALSRIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCI-ELCCGSVQGMRDRNPKIVEIPFNSTNKYQLSIHEN 500 (1028)
T ss_dssp HHHHHHHHSCCCEECTTCTTSCGGGSCEESCHHHHHHHHHH-HHHHSCHHHHHHHSCEEEEECCCTTTCEEEEEEEC
T ss_pred HHHHHHHhcCCCeeecCCCCCccccceeCCCchHHHHHHHH-HHhCCCHHHHHHhCceEEEeccCcccceEEEEEec
Confidence 45556777776654322111 134578999999999999 46666788888899999999999999999999985
No 2
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=100.00 E-value=2.2e-64 Score=587.63 Aligned_cols=402 Identities=22% Similarity=0.298 Sum_probs=323.8
Q ss_pred HHHHHhccCChhHHHhhCCHHHHHHHhCCCcCCCCCCCHHHHHHHHHhcCCCccCCCCCCcHHHHHHHHHhhHHHHHHHH
Q 044442 84 SLAELVKMKDLDELHKFGGVRGVASALETDFDAGICGSDQDIARRREAFGSNTYKKPPSKSLFYFVVDALKDLTILILLG 163 (523)
Q Consensus 84 ~l~~~~~~~~~~~l~~~g~~~~l~~~l~t~~~~GLs~~~~~v~~r~~~~G~N~i~~~~~~~~~~~~~~~f~~~~~~ill~ 163 (523)
++.++-++-+. .+|.+ .++++++.|+||+++||+ ++|+++|+++||+|++++++.+++|+.++++|.++++++|++
T Consensus 41 ~~~~~~~~~~~-~~~~~-~~~~~~~~l~~~~~~GLs--~~ea~~rl~~~G~N~l~~~~~~~~~~~~~~q~~~~~~~il~~ 116 (1034)
T 3ixz_A 41 KLENMKKEMEI-NDHQL-SVAELEQKYQTSATKGLS--ASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWV 116 (1034)
T ss_pred hHHHHhhhcCc-chhhC-CHHHHHHHhCCCcccCCC--HHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHhChHHHHHHH
Confidence 44444333332 23444 599999999999999999 789999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccc--cC---Ccccccchhhhhhhhhhcc-cceee---------------------ec-------------
Q 044442 164 CAVLSLAFGIKE--HG---LKEGWYDGGSILVLFGHCH-FSWKQ---------------------LY------------- 203 (523)
Q Consensus 164 ~ailsl~~~i~~--~g---~~~~~~~~~~il~~vlvi~-~~~~q---------------------~~------------- 203 (523)
+++++++.+... .+ ....|++++.|++++++.. .+|.| .+
T Consensus 117 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~al~~L~~l~~~~a~ViRdG~~~~I~~~eLv 196 (1034)
T 3ixz_A 117 AAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLV 196 (1034)
T ss_pred HHHHHHHHHHHhhccCCCccccchhhhhhhheeeeHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEEEHHHCC
Confidence 999987764221 11 1235677766665554432 22211 00
Q ss_pred -CC---CCCCCeeccCeEEEEecceEEeecccCCCCceeeecCC--------CCceEeeeceeecCcEEEEEEEecccch
Q 044442 204 -TD---STIGDQVPADGLLLDGHSLQVDESSMTGESDHLEVNSS--------QNPFLFSGTKVADGYARMLATSVGMNTT 271 (523)
Q Consensus 204 -GD---L~~Gd~VPAD~ill~g~~l~VDeS~LTGES~pv~k~~~--------~~~~l~~GT~v~~G~~~~~V~~tG~~T~ 271 (523)
|| |++||+|||||+|++|+++.||||+|||||.|+.|.++ ..|++|+||.|.+|.++++|++||++|+
T Consensus 197 ~GDiV~l~~Gd~VPAD~~ll~~~~l~VdES~LTGES~pv~K~~~~~~~~~~~~~n~~f~GT~v~~G~~~~vVv~tG~~T~ 276 (1034)
T 3ixz_A 197 VGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVVNTGDRTI 276 (1034)
T ss_pred CCcEEEEcCCceecCCeEEEEeCCceEEecccCCCCCCeeccCCCccccccccccceecceeEEeecceEEEEeehhhhH
Confidence 99 99999999999999999999999999999999999753 3578999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCCcccCCCCcchhhHHHHHHHHH
Q 044442 272 WGQRMSQISRDNSEQTPLQARLNELTSSTGKIGLAVAFLVLVVLLLRYFTGNTTDENGNQEYNGSKTKVDDIVNAVVGIV 351 (523)
Q Consensus 272 ~Gki~~~~~~~~~~~tplq~~l~~~~~~i~~i~l~~a~l~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (523)
+|++++++...+.++||+|+++++++..+..++++++++++++++++ +. .+...+
T Consensus 277 ~GkI~~~~~~~~~~~tpl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~----------------------~~~~~~ 331 (1034)
T 3ixz_A 277 IGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMCI---GY----------------------TFLRAM 331 (1034)
T ss_pred hhHHHHhhcccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cc----------------------hHHHHH
Confidence 99999999998999999999999999998888877777666654322 10 345667
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhCCcccccchhhhhccCceEEEecCCCccccCceEEEEEEeCCeeeccc
Q 044442 352 AATVTIIVVAIPEGLPLAVTLTLAYSMKRMMADQVMVRKLSACETMGSATTIGTDKTGTLTENRMKVTKFWLGKELVKEA 431 (523)
Q Consensus 352 ~~~i~ilv~~vP~gLplavtl~l~~~~~~m~~~~ilvr~~~~~E~lG~v~~IcsDKTGTLT~n~m~v~~~~~~~~~~~~~ 431 (523)
..++++++++||||||+++++++++++++|.++|++||+++++|+||++++||||||||||+|+|+|.++|+++..+...
T Consensus 332 ~~~i~l~v~~iPe~Lp~~vti~la~~~~rmak~~~lvr~l~avE~LG~v~~IcsDKTGTLT~n~m~v~~~~~~~~~~~~~ 411 (1034)
T 3ixz_A 332 VFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSAD 411 (1034)
T ss_pred HHHHHHHHheeccccHHHHHHHHHHHHHHHhhCCeEecChHHHHhhcCCcEEEcCCCCCcccCeEEEEEEEECCcccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999887654321
Q ss_pred ccC-------CCCHHHHHHHHHHHhhccCccceeccCC---CceeEccChHHHHHHHHHHHHcCCChHHHhhccceeEEe
Q 044442 432 DAS-------SVSPNIIKLIQEGVALNTTGSVYRETSV---SDVEFSGSPTEKAILSWAVLEMNMDMEEYSAISLAFFVI 501 (523)
Q Consensus 432 ~~~-------~~~~~~~~~l~~~i~~n~~~~~~~~~~~---~~~~~~GsptE~ALl~~a~~~lg~~~~~~~~~~~il~~~ 501 (523)
... .........+...+++||++......+. ......|||+|.||++++ ...+.+....++++++++++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~~~~lc~~a~~~~~~~~~~~~~~~~~gdp~e~All~~~-~~~~~~~~~~~~~~~~~~~~ 490 (1034)
T 3ixz_A 412 TTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFS-ELTLGNAMGYRERFPKVCEI 490 (1034)
T ss_pred CcccccccccCcCCHHHHHHHHHHHHhccceeccCcCCCcccCceeccCchHHHHHHHH-HHhCCChHHHHHhCcceEEe
Confidence 100 0111223344556677776654322211 235678999999999999 57788888899999999999
Q ss_pred CCCCCCceEEEEEc
Q 044442 502 SFMRKQMVKSTYNE 515 (523)
Q Consensus 502 pFnS~rKrMSVIv~ 515 (523)
||||+||||+++++
T Consensus 491 pF~s~rk~m~~v~~ 504 (1034)
T 3ixz_A 491 PFNSTNKFQLSIHT 504 (1034)
T ss_pred eecCCCceEEEEEE
Confidence 99999999998865
No 3
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=100.00 E-value=1.4e-63 Score=579.46 Aligned_cols=395 Identities=27% Similarity=0.387 Sum_probs=314.5
Q ss_pred CHHHHHHHhCCCcCCCCCCCHHHHHHHHHhcCCCccCCCCCCcHHHHHHHHHhhHHHHHHHHHHHHHhhhcccccC--Cc
Q 044442 102 GVRGVASALETDFDAGICGSDQDIARRREAFGSNTYKKPPSKSLFYFVVDALKDLTILILLGCAVLSLAFGIKEHG--LK 179 (523)
Q Consensus 102 ~~~~l~~~l~t~~~~GLs~~~~~v~~r~~~~G~N~i~~~~~~~~~~~~~~~f~~~~~~ill~~ailsl~~~i~~~g--~~ 179 (523)
+++++++.|++|.++||+ ++|+++|+++||+|+++.++++++|+++++||+++++++|++++++|+++++...+ +.
T Consensus 9 ~~~~~~~~l~~~~~~GLs--~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~qf~~~~~~~l~~~a~~s~~~~~~~~~~~~~ 86 (995)
T 3ar4_A 9 STEECLAYFGVSETTGLT--PDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEETI 86 (995)
T ss_dssp CHHHHHHHHTCCTTTCBC--HHHHHHHHHHHCCSSCCCCCCCCHHHHHHGGGCSHHHHHHHHHHHHHHHHTTSCCSSGGG
T ss_pred CHHHHHHHhCCCcccCCC--HHHHHHHHHhcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 589999999999999999 78999999999999999999999999999999999999999999999998876532 23
Q ss_pred ccccchhhhhhhhhhcc----------------------------c-c---eeeec------CC---CCCCCeeccCeEE
Q 044442 180 EGWYDGGSILVLFGHCH----------------------------F-S---WKQLY------TD---STIGDQVPADGLL 218 (523)
Q Consensus 180 ~~~~~~~~il~~vlvi~----------------------------~-~---~~q~~------GD---L~~Gd~VPAD~il 218 (523)
..|+++++|++++++.. . + .++.. || |++||+|||||+|
T Consensus 87 ~~~~~~~~i~~~~~~~~~i~~~qe~~a~~al~~L~~~~~~~a~V~R~g~~~~~~I~~~~lv~GDiV~l~~Gd~IPaD~~l 166 (995)
T 3ar4_A 87 TAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRI 166 (995)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHGGGSCSEEEEEBTTCSSCEEEEGGGCCTTCEEEEETTCBCCSEEEE
T ss_pred hhHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeCCCceEEEEEHHHCCCCCEEEECCCCcccccEEE
Confidence 46888877766654311 0 0 01111 99 9999999999999
Q ss_pred EE--ecceEEeecccCCCCceeeecCCC-----------CceEeeeceeecCcEEEEEEEecccchHHHHHHHhcccCCC
Q 044442 219 LD--GHSLQVDESSMTGESDHLEVNSSQ-----------NPFLFSGTKVADGYARMLATSVGMNTTWGQRMSQISRDNSE 285 (523)
Q Consensus 219 l~--g~~l~VDeS~LTGES~pv~k~~~~-----------~~~l~~GT~v~~G~~~~~V~~tG~~T~~Gki~~~~~~~~~~ 285 (523)
++ +.+|.||||+|||||.|+.|.++. +|++|+||.|.+|.++++|++||.+|++|++++++.+.+.+
T Consensus 167 l~~~s~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~v~~GT~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~ 246 (995)
T 3ar4_A 167 LSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQD 246 (995)
T ss_dssp EEECSSCEEEECHHHHCCCSCEEECCSCCCCTTCCGGGCTTEECTTCEEEECEEEEEEEECGGGSHHHHHHHHHHTCCCC
T ss_pred EEEeeceEEEEcccccCCCcceeccccccCCcccCcccccceEecCCEEEcceEEEEEEEcCcchHHHHHHHHhhcCCCC
Confidence 65 456899999999999999998642 37999999999999999999999999999999999998999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHHHhcCc
Q 044442 286 QTPLQARLNELTSSTGKIGLAVAFLVLVVLLLRYFTGNTTDENGNQEYNGSKTKVDDIVNAVVGIVAATVTIIVVAIPEG 365 (523)
Q Consensus 286 ~tplq~~l~~~~~~i~~i~l~~a~l~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ilv~~vP~g 365 (523)
++|+|+++++++..+..+.++++++++++...+ +. +. ..+ ..|...+..+|..++++++++||||
T Consensus 247 ~tplq~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~-----~~~-----~~~~~~~~~~~~~ai~l~v~aiP~~ 311 (995)
T 3ar4_A 247 KTPLQQKLDEFGEQLSKVISLICVAVWLINIGH-FN----DP-----VHG-----GSWIRGAIYYFKIAVALAVAAIPEG 311 (995)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGG-GG----SC-----SSS-----SCHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc----cc-----ccc-----chHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999998887776666554432211 10 00 000 1133445566788999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhCCcccccchhhhhccCceEEEecCCCccccCceEEEEEEeCCeeec-----------ccccC
Q 044442 366 LPLAVTLTLAYSMKRMMADQVMVRKLSACETMGSATTIGTDKTGTLTENRMKVTKFWLGKELVK-----------EADAS 434 (523)
Q Consensus 366 Lplavtl~l~~~~~~m~~~~ilvr~~~~~E~lG~v~~IcsDKTGTLT~n~m~v~~~~~~~~~~~-----------~~~~~ 434 (523)
||+++++++++++++|+++|++||+++++|+||++++||||||||||+|+|+|++++..+..++ ....+
T Consensus 312 Lp~~vt~~la~~~~~ma~~~~lvr~~~~iE~Lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (995)
T 3ar4_A 312 LPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYA 391 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHTTEEESCTTHHHHHHTCCEEEEESTTTTBCCCCEEEEEEEEEEEETTEEEEEEEEECCSSSS
T ss_pred hHHHHHHHHHHHHHHhccCCcEeccchhhhhhcCceEEEecCCCCcccCceEEEEEEecCcccCcccccceeeccCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999987532111 00001
Q ss_pred CC--------------CHHHHHHHHHHHhhccCccceeccCCCceeEccChHHHHHHHHHHHHcCC-Ch--H--------
Q 044442 435 SV--------------SPNIIKLIQEGVALNTTGSVYRETSVSDVEFSGSPTEKAILSWAVLEMNM-DM--E-------- 489 (523)
Q Consensus 435 ~~--------------~~~~~~~l~~~i~~n~~~~~~~~~~~~~~~~~GsptE~ALl~~a~~~lg~-~~--~-------- 489 (523)
+. .+.+ ..+..+.++||++.+...+.++..+..|||+|.||+.++ .+.|+ +. .
T Consensus 392 p~~~~~~~~~~~~~~~~~~~-~~l~~~~alc~~~~~~~~~~~~~~~~~g~p~E~Al~~~a-~~~g~~~~~~~~i~~~~~~ 469 (995)
T 3ar4_A 392 PEGEVLKNDKPIRSGQFDGL-VELATICALCNDSSLDFNETKGVYEKVGEATETALTTLV-EKMNVFNTEVRNLSKVERA 469 (995)
T ss_dssp SCCCEEETTEECCGGGCHHH-HHHHHHHHHSCCCEEEEETTTTEEEEESCHHHHHHHHHH-HHHCTTCCCCTTSCTTTST
T ss_pred CccccccccccccccccHHH-HHHHHHHHHcCCCcccccCCCCceeecCCccHHHHHHHH-HHcCCcccccccccccccc
Confidence 11 1223 334456677777665433333455678999999999999 57775 21 1
Q ss_pred -----HHhhccceeEEeCCCCCCceEEEEEc
Q 044442 490 -----EYSAISLAFFVISFMRKQMVKSTYNE 515 (523)
Q Consensus 490 -----~~~~~~~il~~~pFnS~rKrMSVIv~ 515 (523)
..++.|++++++||+|+||||||+++
T Consensus 470 ~~~~~~~~~~~~~~~~~pF~s~rk~msvi~~ 500 (995)
T 3ar4_A 470 NACNSVIRQLMKKEFTLEFSRDRKSMSVYCS 500 (995)
T ss_dssp THHHHHHHHHEEEEEEEEEETTTTEEEEEEE
T ss_pred ccchhhhhhhCceEEEeecCCCCCeeEEEEe
Confidence 24567999999999999999999997
No 4
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=100.00 E-value=1.8e-58 Score=527.23 Aligned_cols=375 Identities=24% Similarity=0.321 Sum_probs=292.5
Q ss_pred CcChhHHHHHhccCChhHH---H---hhCCHHH-HHHHhCCCcCCCCCCCHHHHHHHHHhcCCCccCCCCCCcHHHHHHH
Q 044442 79 KIDQTSLAELVKMKDLDEL---H---KFGGVRG-VASALETDFDAGICGSDQDIARRREAFGSNTYKKPPSKSLFYFVVD 151 (523)
Q Consensus 79 ~i~~~~l~~~~~~~~~~~l---~---~~g~~~~-l~~~l~t~~~~GLs~~~~~v~~r~~~~G~N~i~~~~~~~~~~~~~~ 151 (523)
+.|.++|.+..+.++.+.. + ..|++++ +++.|+++..+||+ ++|+++|+++||+|++++++ +++|..+++
T Consensus 42 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~~~~GLs--~~ea~~r~~~~G~N~l~~~~-~~~~~~~l~ 118 (920)
T 1mhs_A 42 DEDIDALIEDLESHDGHDAEEEEEEATPGGGRVVPEDMLQTDTRVGLT--SEEVVQRRRKYGLNQMKEEK-ENHFLKFLG 118 (920)
T ss_dssp HHHHHHHHHHHSSCCCCCCSSSCCCSHHHHHSCCSSTTTTTCCCCCCC--SHHHHHHHHHTSSSSCCCCC-CSSHHHHTH
T ss_pred hcCHHHHHHHHhhhcccccccchhhhhcCccchhHHHHhCCCcCCCCC--HHHHHHHHHhcCCCccCCCC-CCHHHHHHH
Confidence 4566667666653332211 1 2344544 56679999889999 58999999999999999775 678888999
Q ss_pred HHhhHHHHHHHHHHHHHhhhcccccCCcccccchhhhhhhhhhcc-----ccee---------e--------ec------
Q 044442 152 ALKDLTILILLGCAVLSLAFGIKEHGLKEGWYDGGSILVLFGHCH-----FSWK---------Q--------LY------ 203 (523)
Q Consensus 152 ~f~~~~~~ill~~ailsl~~~i~~~g~~~~~~~~~~il~~vlvi~-----~~~~---------q--------~~------ 203 (523)
+|.++++++++++++++++++ .|.+++.|++++++.. ..|+ + .+
T Consensus 119 ~f~~~~~~ll~~aai~s~~~g--------~~~~~~~i~~vv~i~~~i~~~qe~~a~~a~~~L~~l~~~~a~V~RdG~~~~ 190 (920)
T 1mhs_A 119 FFVGPIQFVMEGAAVLAAGLE--------DWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKE 190 (920)
T ss_dssp HHHHHHHHHHHHHHHHCTTCS--------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSSCEEECSSSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEECCEEEE
Confidence 999999999999999999887 7888776665543322 1111 0 00
Q ss_pred --------CC---CCCCCeeccCeEEEEecc-eEEeecccCCCCceeeecCCCCceEeeeceeecCcEEEEEEEecccch
Q 044442 204 --------TD---STIGDQVPADGLLLDGHS-LQVDESSMTGESDHLEVNSSQNPFLFSGTKVADGYARMLATSVGMNTT 271 (523)
Q Consensus 204 --------GD---L~~Gd~VPAD~ill~g~~-l~VDeS~LTGES~pv~k~~~~~~~l~~GT~v~~G~~~~~V~~tG~~T~ 271 (523)
|| |++||+|||||+|++|++ +.||||+|||||.|+.|.+ ++.+|+||.|.+|.++++|++||.+|+
T Consensus 191 I~~~eLv~GDiV~l~~Gd~VPaDg~ll~g~~~l~VDES~LTGES~PV~K~~--gd~v~sGT~v~~G~~~~~V~~tG~~T~ 268 (920)
T 1mhs_A 191 IEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHK--GDQVFASSAVKRGEAFVVITATGDNTF 268 (920)
T ss_dssp CCTTTSCTTSEEEECTTCBCSSEEEEEEESSCCEEBCTTTSSCCCCEECCS--SCEECSCBCCSCCCEEEEEEECSTTCS
T ss_pred EEHHHcCCCCEEEeCCCCccccceEEEecCceeeeeccccCCCCcceEecC--CCeeecCceEecceEEEEEEEeCCcCH
Confidence 99 999999999999999995 9999999999999999975 468999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCCcccCCCCcchhhHHHHHHHHH
Q 044442 272 WGQRMSQISRDNSEQTPLQARLNELTSSTGKIGLAVAFLVLVVLLLRYFTGNTTDENGNQEYNGSKTKVDDIVNAVVGIV 351 (523)
Q Consensus 272 ~Gki~~~~~~~~~~~tplq~~l~~~~~~i~~i~l~~a~l~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (523)
+|++++.+.+.+.+++|+|+.+++++..+..+.+++++++++. +++.+ . .+...+
T Consensus 269 ~g~I~~lv~~a~~~~~~l~~~~~~i~~~l~~~~~~~~~i~~~~---~~~~~------------------~----~~~~~l 323 (920)
T 1mhs_A 269 VGRAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWVS---SFYRS------------------N----PIVQIL 323 (920)
T ss_dssp TTTTTSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTTTT------------------C----CHHHHH
T ss_pred HHHHHHHHhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcC------------------C----cHHHHH
Confidence 9999999988888899999999999887765554444333221 11100 0 134567
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhCCcccccchhhhhccCceEEEecCCCccccCceEEEEEEeCCeeeccc
Q 044442 352 AATVTIIVVAIPEGLPLAVTLTLAYSMKRMMADQVMVRKLSACETMGSATTIGTDKTGTLTENRMKVTKFWLGKELVKEA 431 (523)
Q Consensus 352 ~~~i~ilv~~vP~gLplavtl~l~~~~~~m~~~~ilvr~~~~~E~lG~v~~IcsDKTGTLT~n~m~v~~~~~~~~~~~~~ 431 (523)
..++++++++||||||+++++++++++.+|.++|++||+++++|+||++++||||||||||+|+|+|.+++..+. +.
T Consensus 324 ~~av~llV~aiP~aLp~~vti~la~g~~~mak~~ilvk~~~aiE~Lg~v~vIc~DKTGTLT~n~m~v~~~~~~~g-~~-- 400 (920)
T 1mhs_A 324 EFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYTVAG-VD-- 400 (920)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTTCCCCCTTTHHHHHTCCEEEEETBTTTBSSCSCCCCCBCCSC-CC--
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHhCCeEEecCchhhhhccCcEEEECCCCCccccceeEEEEeecCC-CC--
Confidence 789999999999999999999999999999999999999999999999999999999999999999999875321 11
Q ss_pred ccCCCCHHHHHHHHHHHhhccCccceeccCCCceeEccChHHHHHHHHHHHHcCCChHHHhhccceeEEeCCCCCCceEE
Q 044442 432 DASSVSPNIIKLIQEGVALNTTGSVYRETSVSDVEFSGSPTEKAILSWAVLEMNMDMEEYSAISLAFFVISFMRKQMVKS 511 (523)
Q Consensus 432 ~~~~~~~~~~~~l~~~i~~n~~~~~~~~~~~~~~~~~GsptE~ALl~~a~~~lg~~~~~~~~~~~il~~~pFnS~rKrMS 511 (523)
.+ +++. ..++|+... . . .|+|+|.||++++ .+.+.. ...+..+++++.+||+|+|||||
T Consensus 401 -----~~---~ll~-~a~l~~~~~----~-~-----~~~P~e~Al~~~~-~~~~~~-~~~~~~~~~~~~~pF~s~~k~ms 459 (920)
T 1mhs_A 401 -----PE---DLML-TACLAASRK----K-K-----GIDAIDKAFLKSL-KYYPRA-KSVLSKYKVLQFHPFDPVSKKVV 459 (920)
T ss_dssp -----CT---HHHH-HHHHSCCCS----S-C-----SCCSHHHHHHHHH-HHSSSC-CGGGSCCCEEEEEEEETTTTEEE
T ss_pred -----HH---HHHH-HHHHhcCCc----c-c-----CCChHHHHHHHHH-Hhcccc-hhhccccceeEEeeccCCCCeEE
Confidence 11 2333 334443211 1 1 1599999999998 466542 23456789999999999999999
Q ss_pred EEEc
Q 044442 512 TYNE 515 (523)
Q Consensus 512 VIv~ 515 (523)
++++
T Consensus 460 ~iv~ 463 (920)
T 1mhs_A 460 AVVE 463 (920)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9996
No 5
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=100.00 E-value=2.9e-58 Score=525.29 Aligned_cols=356 Identities=20% Similarity=0.299 Sum_probs=276.5
Q ss_pred CHHHHHHHhCCCcCCCCCCCHHHHHHHHHhcCCCccCCCCCCcHHHHHHHHHhhHHHHHHHHHHHHHhhhcccccCCccc
Q 044442 102 GVRGVASALETDFDAGICGSDQDIARRREAFGSNTYKKPPSKSLFYFVVDALKDLTILILLGCAVLSLAFGIKEHGLKEG 181 (523)
Q Consensus 102 ~~~~l~~~l~t~~~~GLs~~~~~v~~r~~~~G~N~i~~~~~~~~~~~~~~~f~~~~~~ill~~ailsl~~~i~~~g~~~~ 181 (523)
.++++++.|+++ .+||+ ++|+++|+++||+|++++++ +++|+.++++|.++++++|+++++++++++.. .+.+..
T Consensus 18 ~~~~~~~~l~~~-~~GLs--~~e~~~r~~~~G~N~l~~~~-~~~~~~~l~~~~~p~~~il~~aaiis~~l~~~-~~~~~~ 92 (885)
T 3b8c_A 18 PIEEVFQQLKCS-REGLT--TQEGEDRIQIFGPNKLEEKK-ESKLLKFLGFMWNPLSWVMEMAAIMAIALANG-DGRPPD 92 (885)
T ss_dssp STTCCTTTSSSC-SSCST--HHHHHHHSSSCCSCCTTTTC-CCTTSSTTSCCCGGGSSHHHHHHHGGGGSSCC-TTSCSC
T ss_pred CHHHHHHHhCCC-CCCCC--HHHHHHHHHhcCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccc
Confidence 477888899998 68999 78999999999999999887 67788888999999999999999999998743 234457
Q ss_pred ccchhhhhhhhhhcc-cceee----------e-----------c--------------CC---CCCCCeeccCeEEEEec
Q 044442 182 WYDGGSILVLFGHCH-FSWKQ----------L-----------Y--------------TD---STIGDQVPADGLLLDGH 222 (523)
Q Consensus 182 ~~~~~~il~~vlvi~-~~~~q----------~-----------~--------------GD---L~~Gd~VPAD~ill~g~ 222 (523)
|++++.|++++++.. .++.| + + || |++||+|||||+|++|+
T Consensus 93 ~~~~~~I~~~v~i~~~l~~~qe~ka~~al~~L~~~~~~~a~V~RdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~ll~g~ 172 (885)
T 3b8c_A 93 WQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGD 172 (885)
T ss_dssp CTTHHHHHHHTTTTTTTTTTTTTTTTTHHHHTTTSCSCCCCCCCSSCSCCCCTTTTCTTSBCCCCSSCCCSSCCCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeceEEEEcC
Confidence 999887766654432 22211 0 0 99 99999999999999999
Q ss_pred ceEEeecccCCCCceeeecCCCCceEeeeceeecCcEEEEEEEecccchHHHHHHHhcccCCCCChHHHHHHHHHHHHHH
Q 044442 223 SLQVDESSMTGESDHLEVNSSQNPFLFSGTKVADGYARMLATSVGMNTTWGQRMSQISRDNSEQTPLQARLNELTSSTGK 302 (523)
Q Consensus 223 ~l~VDeS~LTGES~pv~k~~~~~~~l~~GT~v~~G~~~~~V~~tG~~T~~Gki~~~~~~~~~~~tplq~~l~~~~~~i~~ 302 (523)
+|.||||+|||||.|+.|.++ +.+|+||.|.+|.++++|++||.+|++|++++.+.+ ..+++|+|+.+++++.++..
T Consensus 173 ~l~VdES~LTGES~Pv~K~~g--~~v~~GT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~-~~~~~~lq~~~~~i~~~~~~ 249 (885)
T 3b8c_A 173 PLKVDQSALTGESLPVTKHPG--QEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQVGHFQKVLTAIGNFCIC 249 (885)
T ss_dssp CBCCCCCSTTCCSSCCCBSSC--CCCCSCCCCCSCCCCCBCCSCTTTTTSTTCCCSCCS-CSCCSTTTTTTHHHHHHHHH
T ss_pred cccccccccCCCCcceEecCC--CccccCeEEeeeEEEEEEEEcCcccHHHHHHHHHhc-ccccChHHHHHHHHHHHHHH
Confidence 989999999999999999754 579999999999999999999999999999887766 56789999999998865322
Q ss_pred -HHHHHHHHHHHHHHHHHHhcCccCCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 044442 303 -IGLAVAFLVLVVLLLRYFTGNTTDENGNQEYNGSKTKVDDIVNAVVGIVAATVTIIVVAIPEGLPLAVTLTLAYSMKRM 381 (523)
Q Consensus 303 -i~l~~a~l~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ilv~~vP~gLplavtl~l~~~~~~m 381 (523)
+.+++++++++++ ++.+ .. +...+..++++++++|||+||+++++++++++.+|
T Consensus 250 ~~~~~~~~~~~~~~---~~~~--------~~--------------~~~~~~~~v~llv~aiP~aLp~~vti~la~g~~r~ 304 (885)
T 3b8c_A 250 SIAIGMVIEIIVMY---PIQR--------RK--------------YRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRL 304 (885)
T ss_dssp HHHHHHHHHSTTTT---TTTC--------SC--------------STTHHHHHHHHTTTTCCSSTTTHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHcc--------Cc--------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 2222222211111 1100 00 11235678999999999999999999999999999
Q ss_pred hhCCcccccchhhhhccCceEEEecCCCccccCceEEEEEEeCCeeecccccCCCCHHHHHHHHHHHhhccCccceeccC
Q 044442 382 MADQVMVRKLSACETMGSATTIGTDKTGTLTENRMKVTKFWLGKELVKEADASSVSPNIIKLIQEGVALNTTGSVYRETS 461 (523)
Q Consensus 382 ~~~~ilvr~~~~~E~lG~v~~IcsDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~n~~~~~~~~~~ 461 (523)
.++|++||+++++|+||++++||||||||||+|+|+|.+.++. .+. ...++ .+++. ..++|+...
T Consensus 305 ak~~ilvk~~~aiE~Lg~v~~Ic~DKTGTLT~n~m~v~~~~~~--~~~----~~~~~--~~ll~-~aa~~~~~~------ 369 (885)
T 3b8c_A 305 SQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVE--VFC----KGVEK--DQVLL-FAAMASRVE------ 369 (885)
T ss_dssp TTTSCCCSSGGGHHHHTTCCCCEEECCCCCSCCCCCCCSCCCC--SSC----SSTTH--HHHHH-HHHHHCCSS------
T ss_pred HhCCeEeCCchHHHHHhCCCEEEECCCCCcccCceEEEEEEEe--ccC----CCCCH--HHHHH-HHHHHhCCC------
Confidence 9999999999999999999999999999999999999754321 011 01111 22333 334444210
Q ss_pred CCceeEccChHHHHHHHHHHHHcCCChHHHhhccceeEEeCCCCCCceEEEEEcC
Q 044442 462 VSDVEFSGSPTEKAILSWAVLEMNMDMEEYSAISLAFFVISFMRKQMVKSTYNED 516 (523)
Q Consensus 462 ~~~~~~~GsptE~ALl~~a~~~lg~~~~~~~~~~~il~~~pFnS~rKrMSVIv~~ 516 (523)
.|+|+|.|+++++ .+ ....++.+++++.+||+|+||||++++++
T Consensus 370 ------~~~p~~~Al~~~~-~~----~~~~~~~~~~~~~~pF~s~~k~~sv~~~~ 413 (885)
T 3b8c_A 370 ------NQDAIDAAMVGML-AD----PKEARAGIREVHFLPFNPVDKRTALTYID 413 (885)
T ss_dssp ------SCCSHHHHHHHTT-CC----TTCCCCSSCCBCCCCCCTTTCCCCCBBCS
T ss_pred ------CCCchHHHHHHHh-hc----hhhHhhcCceeecccCCcccceEEEEEEe
Confidence 3799999999886 22 22345678899999999999999999874
No 6
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=100.00 E-value=8.5e-41 Score=374.83 Aligned_cols=246 Identities=26% Similarity=0.292 Sum_probs=204.3
Q ss_pred CC---CCCCCeeccCeEEEEecceEEeecccCCCCceeeecCCCCceEeeeceeecCcEEEEEEEecccchHHHHHHHhc
Q 044442 204 TD---STIGDQVPADGLLLDGHSLQVDESSMTGESDHLEVNSSQNPFLFSGTKVADGYARMLATSVGMNTTWGQRMSQIS 280 (523)
Q Consensus 204 GD---L~~Gd~VPAD~ill~g~~l~VDeS~LTGES~pv~k~~~~~~~l~~GT~v~~G~~~~~V~~tG~~T~~Gki~~~~~ 280 (523)
|| +++||+|||||++++|++ .||||+|||||.|+.|.++ +.+++||.+.+|.+++.|++||.+|.+|++++++.
T Consensus 247 GDiv~v~~Ge~IPaDg~vl~G~~-~VDES~LTGES~Pv~K~~g--d~v~~Gt~~~~G~~~~~v~~~G~~T~l~~I~~lv~ 323 (736)
T 3rfu_A 247 GDLLRVRPGEKIPVDGEVQEGRS-FVDESMVTGEPIPVAKEAS--AKVIGATINQTGSFVMKALHVGSDTMLARIVQMVS 323 (736)
T ss_dssp TCEECCCSSEECCSCEEECSSCE-EEECSSSTTCSSCEEECTT--CEECTTCEEESCCCCEEECCCSTTSHHHHHHHHHH
T ss_pred CCEEEECCCCcccccEEEEECce-EeeecccCCccccEEeccC--CcCCCceEeccceEEEEEEEechhhHHHHHHHHHH
Confidence 99 999999999999999987 7999999999999999765 46999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 044442 281 RDNSEQTPLQARLNELTSSTGKIGLAVAFLVLVVLLLRYFTGNTTDENGNQEYNGSKTKVDDIVNAVVGIVAATVTIIVV 360 (523)
Q Consensus 281 ~~~~~~tplq~~l~~~~~~i~~i~l~~a~l~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ilv~ 360 (523)
+.+.+++|+|+.+++++.++..+.+++++++++++++. +.. . .+...+..+++++++
T Consensus 324 ~a~~~k~~~q~~~d~~a~~~v~~vl~ia~~~~~~w~~~---~~~------~--------------~~~~~l~~ai~vlvi 380 (736)
T 3rfu_A 324 DAQRSRAPIQRLADTVSGWFVPAVILVAVLSFIVWALL---GPQ------P--------------ALSYGLIAAVSVLII 380 (736)
T ss_dssp HHHSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSS------S--------------STTHHHHHHHHHHHH
T ss_pred HhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCC------c--------------hHHHHHHHHHHhHHH
Confidence 99999999999999999999999888888887766432 210 0 022347789999999
Q ss_pred HhcCchHHHHHHHHHHHHHHHhhCCcccccchhhhhccCceEEEecCCCccccCceEEEEEEeCCeeecccccCCCCHHH
Q 044442 361 AIPEGLPLAVTLTLAYSMKRMMADQVMVRKLSACETMGSATTIGTDKTGTLTENRMKVTKFWLGKELVKEADASSVSPNI 440 (523)
Q Consensus 361 ~vP~gLplavtl~l~~~~~~m~~~~ilvr~~~~~E~lG~v~~IcsDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~ 440 (523)
+|||+|++++++++..++.++.++|+++|+++++|+||++++||||||||||+|+|+|.+++.++. .+
T Consensus 381 acPcaL~la~p~a~~~~~~~~a~~gilvk~~~alE~l~~v~~i~fDKTGTLT~g~~~v~~i~~~~~----------~~-- 448 (736)
T 3rfu_A 381 ACPCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIVTDDF----------VE-- 448 (736)
T ss_dssp HCCSTHHHHHHHHHHHHHHHHHHTTEEESCHHHHHHHTSCCEEEECCBTTTBCSSCEEEEEEESSS----------CH--
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcceeechHHHHHHhcCCCEEEEeCCCCCcCCceEEEEEEecCC----------CH--
Confidence 999999999999999999999999999999999999999999999999999999999999984321 11
Q ss_pred HHHHHHHHhhccCccceeccCCCceeEccChHHHHHHHHHHHHcCCChHHHhhccceeEEeCCCCCCceEE
Q 044442 441 IKLIQEGVALNTTGSVYRETSVSDVEFSGSPTEKAILSWAVLEMNMDMEEYSAISLAFFVISFMRKQMVKS 511 (523)
Q Consensus 441 ~~~l~~~i~~n~~~~~~~~~~~~~~~~~GsptE~ALl~~a~~~lg~~~~~~~~~~~il~~~pFnS~rKrMS 511 (523)
.+.+..+.++.. ...+|.+.|+++++ .+.|.+. ..+.+|++.+++..
T Consensus 449 ~~~l~~aa~le~--------------~s~hPla~Aiv~~a-~~~~~~~---------~~~~~f~~~~g~gv 495 (736)
T 3rfu_A 449 DNALALAAALEH--------------QSEHPLANAIVHAA-KEKGLSL---------GSVEAFEAPTGKGV 495 (736)
T ss_dssp HHHHHHHHHHHH--------------SSCCHHHHHHHHHH-HTTCCCC---------CCCSCCCCCTTTEE
T ss_pred HHHHHHHHHHhh--------------cCCChHHHHHHHHH-HhcCCCc---------cCcccccccCCceE
Confidence 122222222221 12489999999999 4666532 23457888776643
No 7
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.5e-39 Score=361.30 Aligned_cols=231 Identities=24% Similarity=0.309 Sum_probs=191.3
Q ss_pred CC---CCCCCeeccCeEEEEecceEEeecccCCCCceeeecCCCCceEeeeceeecCcEEEEEEEecccchHHHHHHHhc
Q 044442 204 TD---STIGDQVPADGLLLDGHSLQVDESSMTGESDHLEVNSSQNPFLFSGTKVADGYARMLATSVGMNTTWGQRMSQIS 280 (523)
Q Consensus 204 GD---L~~Gd~VPAD~ill~g~~l~VDeS~LTGES~pv~k~~~~~~~l~~GT~v~~G~~~~~V~~tG~~T~~Gki~~~~~ 280 (523)
|| +++||+|||||++++|++ .||||+|||||.|+.|.+ ++.+|+||.+.+|.++++|++||.+|.+|++++.+.
T Consensus 154 GDiv~v~~Ge~IPaDg~vl~G~~-~VdeS~LTGES~Pv~K~~--g~~v~~Gt~~~~g~~~~~v~~~G~~T~l~~i~~lv~ 230 (645)
T 3j08_A 154 GDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPVLKSK--GDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVE 230 (645)
T ss_dssp TCEEEECTTCBCCSEEEEEECCE-EEECHHHHCCSSCEEECT--TCEECTTCEECSSCEEEEEEECGGGSHHHHHHHHHS
T ss_pred CCEEEECCCCEEeeEEEEEECcE-EEEcccccCCCCceecCC--CCEeeccEEEecCcEEEEEEEcCCccHHHHHHHHHH
Confidence 99 999999999999999987 799999999999999975 457999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 044442 281 RDNSEQTPLQARLNELTSSTGKIGLAVAFLVLVVLLLRYFTGNTTDENGNQEYNGSKTKVDDIVNAVVGIVAATVTIIVV 360 (523)
Q Consensus 281 ~~~~~~tplq~~l~~~~~~i~~i~l~~a~l~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ilv~ 360 (523)
+.+.+++|+|+.+++++.++..+.+++++++++++. +... ..+ ...+..+++++++
T Consensus 231 ~a~~~k~~~~~~~d~~~~~~~~~vl~~a~~~~~~~~---~~~~-------~~~--------------~~~~~~~i~vlvi 286 (645)
T 3j08_A 231 DAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWY---FIAH-------APL--------------LFAFTTLIAVLVV 286 (645)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCSS---CCCS-------CSC--------------CCTTTTTHHHHHH
T ss_pred HhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcC-------CcH--------------HHHHHHHHHHHHH
Confidence 999999999999999999888877777776655432 1100 001 1124567899999
Q ss_pred HhcCchHHHHHHHHHHHHHHHhhCCcccccchhhhhccCceEEEecCCCccccCceEEEEEEeCCeeecccccCCCCHHH
Q 044442 361 AIPEGLPLAVTLTLAYSMKRMMADQVMVRKLSACETMGSATTIGTDKTGTLTENRMKVTKFWLGKELVKEADASSVSPNI 440 (523)
Q Consensus 361 ~vP~gLplavtl~l~~~~~~m~~~~ilvr~~~~~E~lG~v~~IcsDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~ 440 (523)
+|||+||+++++++..++.++.++|++||+++++|+||++++||||||||||+|+|+|.+++..+.. .
T Consensus 287 a~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~---------~--- 354 (645)
T 3j08_A 287 ACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGD---------E--- 354 (645)
T ss_dssp HSCTTHHHHHHHHHHHHHHHHHTTCCCCSSTTHHHHGGGCCEEEEEGGGTSSSSCCEEEEEEESSSC---------H---
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHCCeEecCchHHHHhhCCCEEEEcCcccccCCCeEEEEEEeCCCC---------H---
Confidence 9999999999999999999999999999999999999999999999999999999999999865321 1
Q ss_pred HHHHHHHHhhccCccceeccCCCceeEccChHHHHHHHHHHHHcCCCh
Q 044442 441 IKLIQEGVALNTTGSVYRETSVSDVEFSGSPTEKAILSWAVLEMNMDM 488 (523)
Q Consensus 441 ~~~l~~~i~~n~~~~~~~~~~~~~~~~~GsptE~ALl~~a~~~lg~~~ 488 (523)
.+++..+..+.. ...+|++.|+++++ .+.|.+.
T Consensus 355 ~~~l~~aa~~e~--------------~s~hPla~Aiv~~a-~~~g~~~ 387 (645)
T 3j08_A 355 RELLRLAAIAER--------------RSEHPIAEAIVKKA-LEHGIEL 387 (645)
T ss_dssp HHHHHHHHHHHT--------------TCCSHHHHHHHHHH-HHTTCCC
T ss_pred HHHHHHHHHHhh--------------cCCChhHHHHHHHH-HhcCCCc
Confidence 122222222211 12479999999999 5777643
No 8
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.3e-39 Score=364.33 Aligned_cols=230 Identities=24% Similarity=0.306 Sum_probs=191.5
Q ss_pred CC---CCCCCeeccCeEEEEecceEEeecccCCCCceeeecCCCCceEeeeceeecCcEEEEEEEecccchHHHHHHHhc
Q 044442 204 TD---STIGDQVPADGLLLDGHSLQVDESSMTGESDHLEVNSSQNPFLFSGTKVADGYARMLATSVGMNTTWGQRMSQIS 280 (523)
Q Consensus 204 GD---L~~Gd~VPAD~ill~g~~l~VDeS~LTGES~pv~k~~~~~~~l~~GT~v~~G~~~~~V~~tG~~T~~Gki~~~~~ 280 (523)
|| +++||+|||||++++|++ .||||+|||||.|+.|.+ ++.+|+||.+.+|.++++|++||.+|.+|++++.+.
T Consensus 232 GDiv~v~~Ge~IPaDg~vl~G~~-~VdeS~LTGES~pv~K~~--g~~v~~Gt~~~~g~~~~~v~~~g~~T~l~~i~~lv~ 308 (723)
T 3j09_A 232 GDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPVLKSK--GDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVE 308 (723)
T ss_dssp TCEEEECTTCBCCSEEEEEECCE-EEECHHHHCCSSCEEECT--TCEECTTCEECSSCEEEEEEECGGGSHHHHHHHHHS
T ss_pred CCEEEECCCCEEeeEEEEEECCe-EEecccccCCCcceeecC--CCeeccceEEecCcEEEEEEEecCccHHHHHHHHHH
Confidence 99 999999999999999987 799999999999999975 457999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 044442 281 RDNSEQTPLQARLNELTSSTGKIGLAVAFLVLVVLLLRYFTGNTTDENGNQEYNGSKTKVDDIVNAVVGIVAATVTIIVV 360 (523)
Q Consensus 281 ~~~~~~tplq~~l~~~~~~i~~i~l~~a~l~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ilv~ 360 (523)
+.+.+++|+|+.+++++.++..+.++++++++++++ +.. + . .+...+..+++++++
T Consensus 309 ~a~~~k~~~~~~~d~~~~~~~~~vl~~a~~~~~~~~---~~~------~-~--------------~~~~~~~~~i~vlvi 364 (723)
T 3j09_A 309 DAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWY---FIA------H-A--------------PLLFAFTTLIAVLVV 364 (723)
T ss_dssp SSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSC---SST------T-C--------------TTCCSHHHHHHHHHH
T ss_pred HhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhc------C-C--------------cHHHHHHHHHHHHHh
Confidence 999999999999999999888887777776655432 110 0 0 011236678999999
Q ss_pred HhcCchHHHHHHHHHHHHHHHhhCCcccccchhhhhccCceEEEecCCCccccCceEEEEEEeCCeeecccccCCCCHHH
Q 044442 361 AIPEGLPLAVTLTLAYSMKRMMADQVMVRKLSACETMGSATTIGTDKTGTLTENRMKVTKFWLGKELVKEADASSVSPNI 440 (523)
Q Consensus 361 ~vP~gLplavtl~l~~~~~~m~~~~ilvr~~~~~E~lG~v~~IcsDKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~ 440 (523)
+|||+|++++++++..++.++.++|++||+++++|+||++++||||||||||+|+|+|.+++..+.. .
T Consensus 365 a~P~aL~la~p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~---------~--- 432 (723)
T 3j09_A 365 ACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGD---------E--- 432 (723)
T ss_dssp HSCTTHHHHHHHHHHHHHHHHHTTTCEESSTTHHHHGGGCCEEEEEHHHHTSCSCCEEEEEEESSSC---------H---
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCeEEeChHHHHHhhcCCEEEEcCCCccccCceEEEEEEeCCCC---------H---
Confidence 9999999999999999999999999999999999999999999999999999999999999865311 1
Q ss_pred HHHHHHHHhhccCccceeccCCCceeEccChHHHHHHHHHHHHcCCC
Q 044442 441 IKLIQEGVALNTTGSVYRETSVSDVEFSGSPTEKAILSWAVLEMNMD 487 (523)
Q Consensus 441 ~~~l~~~i~~n~~~~~~~~~~~~~~~~~GsptE~ALl~~a~~~lg~~ 487 (523)
.+++..+..+.. ...+|++.|+++++ .+.|.+
T Consensus 433 ~~~l~~aa~~e~--------------~s~hP~~~Ai~~~a-~~~~~~ 464 (723)
T 3j09_A 433 RELLRLAAIAER--------------RSEHPIAEAIVKKA-LEHGIE 464 (723)
T ss_dssp HHHHHHHHHHHT--------------TCCSHHHHHHHHHH-HHTTCC
T ss_pred HHHHHHHHHHhc--------------cCCCchhHHHHHHH-HhcCCC
Confidence 122222222211 12479999999999 566654
No 9
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=99.75 E-value=6.7e-19 Score=152.17 Aligned_cols=76 Identities=29% Similarity=0.425 Sum_probs=71.0
Q ss_pred CC---CCCCCeeccCeEEEEecceEEeecccCCCCceeeecCCCCceEeeeceeecCcEEEEEEEecccchHHHHHHHhc
Q 044442 204 TD---STIGDQVPADGLLLDGHSLQVDESSMTGESDHLEVNSSQNPFLFSGTKVADGYARMLATSVGMNTTWGQRMSQIS 280 (523)
Q Consensus 204 GD---L~~Gd~VPAD~ill~g~~l~VDeS~LTGES~pv~k~~~~~~~l~~GT~v~~G~~~~~V~~tG~~T~~Gki~~~~~ 280 (523)
|| +++||+|||||++++|+. .||||+|||||.|+.|.++ +.+|+||.+.+|.+.++|++||.+|.+|++++.+.
T Consensus 33 GDiv~v~~G~~iPaDg~v~~g~~-~vdeS~LTGEs~pv~k~~g--~~v~aGt~~~~G~~~~~V~~~g~~T~~~~i~~lv~ 109 (113)
T 2hc8_A 33 GDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPVLKSKG--DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVE 109 (113)
T ss_dssp TCEEEECTTCBCCSEEEEEECCE-EEECHHHHCCSSCEEECTT--CEECTTCEECSSCEEEEEEECGGGSHHHHHHHHHH
T ss_pred CCEEEECCCCEEeeeEEEEEceE-EEEccccCCCCccEEECCC--CEEEeCCEEeeceEEEEEEEecCcCHHHHHHHHHH
Confidence 99 999999999999999984 8999999999999999754 67999999999999999999999999999999876
Q ss_pred cc
Q 044442 281 RD 282 (523)
Q Consensus 281 ~~ 282 (523)
+.
T Consensus 110 ~a 111 (113)
T 2hc8_A 110 DA 111 (113)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 10
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-18 Score=152.83 Aligned_cols=76 Identities=32% Similarity=0.469 Sum_probs=71.5
Q ss_pred CC---CCCCCeeccCeEEEEecceEEeecccCCCCceeeecCCCCceEeeeceeecCcEEEEEEEecccchHHHHHHHhc
Q 044442 204 TD---STIGDQVPADGLLLDGHSLQVDESSMTGESDHLEVNSSQNPFLFSGTKVADGYARMLATSVGMNTTWGQRMSQIS 280 (523)
Q Consensus 204 GD---L~~Gd~VPAD~ill~g~~l~VDeS~LTGES~pv~k~~~~~~~l~~GT~v~~G~~~~~V~~tG~~T~~Gki~~~~~ 280 (523)
|| |++||+|||||++++|++ .||||+|||||.|+.|.+ ++.+|+||.+.+|.+.+.|++||.+|.+|+|++.+.
T Consensus 45 GDiv~v~~G~~iPaDg~vi~g~~-~vdeS~LTGEs~pv~k~~--g~~v~aGt~~~~G~~~~~v~~~g~~T~~~~I~~lv~ 121 (124)
T 2kij_A 45 GDIIKVVPGGKFPVDGRVIEGHS-MVDESLITGEAMPVAKKP--GSTVIAGSINQNGSLLICATHVGADTTLSQIVKLVE 121 (124)
T ss_dssp TCEEECCTTCBCSSCEEECSCCC-EEECTTTTCCSSCEECCT--TEEECTTCEEESSCCEEEECSCTTTCHHHHHHHHTT
T ss_pred CCEEEECCCCEEEeeEEEEEccE-EEEeccccCCCccEEeCC--CCEEEcCCEEeeeEEEEEEEEecccCHHHHHHHHHH
Confidence 99 999999999999999998 899999999999999975 468999999999999999999999999999999886
Q ss_pred cc
Q 044442 281 RD 282 (523)
Q Consensus 281 ~~ 282 (523)
+.
T Consensus 122 ~a 123 (124)
T 2kij_A 122 EA 123 (124)
T ss_dssp TT
T ss_pred hh
Confidence 53
No 11
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=98.09 E-value=3e-09 Score=104.87 Aligned_cols=47 Identities=28% Similarity=0.345 Sum_probs=44.1
Q ss_pred HHHHHHhhCCcccccchhhhhccCceEEEecCCCccccCceEEEEEE
Q 044442 376 YSMKRMMADQVMVRKLSACETMGSATTIGTDKTGTLTENRMKVTKFW 422 (523)
Q Consensus 376 ~~~~~m~~~~ilvr~~~~~E~lG~v~~IcsDKTGTLT~n~m~v~~~~ 422 (523)
.++.++.++|+++|+..++|.|+++++||||||||||+|+|.|.+++
T Consensus 4 ~a~~~~~~~gil~k~~~~le~l~~i~~v~fDktGTLT~g~~~v~~~~ 50 (263)
T 2yj3_A 4 SLYEKMLHKGMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFI 50 (263)
Confidence 36788999999999999999999999999999999999999999874
No 12
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=98.25 E-value=1.7e-06 Score=85.94 Aligned_cols=50 Identities=24% Similarity=0.245 Sum_probs=41.8
Q ss_pred HHHHHHhhCCcccccchhhhhccCceEEEecCCCccccCceEEEEEEeCC
Q 044442 376 YSMKRMMADQVMVRKLSACETMGSATTIGTDKTGTLTENRMKVTKFWLGK 425 (523)
Q Consensus 376 ~~~~~m~~~~ilvr~~~~~E~lG~v~~IcsDKTGTLT~n~m~v~~~~~~~ 425 (523)
.+.+++.++|+++|++.++|+|+++++||||||||||.+.+.+.+++..+
T Consensus 8 ~~~~~~~~~gilik~~~~le~l~~i~~viFD~dGTL~ds~~~~~~~~~~~ 57 (287)
T 3a1c_A 8 HGSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLN 57 (287)
T ss_dssp ------CCCCEEECSTTHHHHHHHCCEEEEECCCCCBCSCCEEEEEEESS
T ss_pred hhHHHHHHCCEEEeCcHHHHHhhcCCEEEEeCCCCCcCCCEEEEEEEeCC
Confidence 35688999999999999999999999999999999999999999887653
No 13
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide binding, ATP binding, MGTA, membra protein, cell inner membrane; 1.60A {Escherichia coli}
Probab=98.13 E-value=1e-06 Score=81.09 Aligned_cols=46 Identities=13% Similarity=-0.033 Sum_probs=38.5
Q ss_pred ccChHHHHHHHHHHHHcCCChHHHhhccceeEEeCCCCCCceEEEEEcC
Q 044442 468 SGSPTEKAILSWAVLEMNMDMEEYSAISLAFFVISFMRKQMVKSTYNED 516 (523)
Q Consensus 468 ~GsptE~ALl~~a~~~lg~~~~~~~~~~~il~~~pFnS~rKrMSVIv~~ 516 (523)
.+||+|.||++++ ...+ ....++.|++++.+||||+||||||++++
T Consensus 32 ~~n~~d~Ail~~~-~~~~--~~~~~~~~~~~~eiPFds~rKrmsvv~~~ 77 (170)
T 3gwi_A 32 LKNLLDTAVLEGT-DEES--ARSLASRWQKIDEIPFDFERRRMSVVVAE 77 (170)
T ss_dssp CCCHHHHHHHHTS-CHHH--HHHHHHHSEEEEEECCCTTTCEEEEEEES
T ss_pred CCChHHHHHHHHH-HhcC--hhhhhhcCeEEeeEecCcccCcEEEEEEe
Confidence 3699999999987 2322 45567889999999999999999999974
No 14
>4aqr_D Calcium-transporting ATPase 8, plasma membrane-TY; Ca-binding protein-hydrolase complex, plasma-membrane calciu; 1.95A {Arabidopsis thaliana}
Probab=97.27 E-value=6.2e-05 Score=54.87 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=25.7
Q ss_pred CCCcchhhhhhhhhchhhhhhHHHHHHH
Q 044442 25 NVPTKKWHSAFTKIYCSRTLFSLAEIAK 52 (523)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (523)
.+.++|||+|.+++|++|+|++++|+++
T Consensus 3 ~e~L~rWR~a~lVlNa~RRFR~t~dL~K 30 (57)
T 4aqr_D 3 IERLQQWRKAALVLNASRRFRYTLDLKK 30 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHhhhhhhcchhh
Confidence 4578999999999999999999999976
No 15
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*
Probab=97.14 E-value=0.00018 Score=69.73 Aligned_cols=38 Identities=37% Similarity=0.313 Sum_probs=31.9
Q ss_pred cccchhhhhccCceEEEecCCCccccCceEEEEEEeCC
Q 044442 388 VRKLSACETMGSATTIGTDKTGTLTENRMKVTKFWLGK 425 (523)
Q Consensus 388 vr~~~~~E~lG~v~~IcsDKTGTLT~n~m~v~~~~~~~ 425 (523)
+|+++++|+|++++.||||++||||.|+|+|.+++..+
T Consensus 1 ~k~~~~~e~~~~ik~i~FD~DGTL~d~~~~v~~~~~~~ 38 (280)
T 3skx_A 1 MRDRQAFERAKDLQAVIFDKTGTLTEGRFGVTDIVGFN 38 (280)
T ss_dssp ----CHHHHGGGCCEEEEECCCCCEEEEEEEEEEEESS
T ss_pred CCChHHHHHhcCCCEEEEeCCCcCCCCcEEEEEEEecC
Confidence 58899999999999999999999999999999987643
No 16
>2l1w_B Vacuolar calcium ATPase BCA1 peptide; calmodulin, calmodulin complex, soybean calmodulin, vacuolar ATPase, metal binding protein; NMR {Glycine max}
Probab=93.93 E-value=0.012 Score=36.17 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=20.6
Q ss_pred Ccchhhhhh-hhhchhhhhhHHHHH
Q 044442 27 PTKKWHSAF-TKIYCSRTLFSLAEI 50 (523)
Q Consensus 27 ~~~~~~~~~-~~~~~~~~~~~~~~~ 50 (523)
+++|||+++ ++.|+.|+|+++.++
T Consensus 1 al~rWR~a~~~v~n~~rrfr~~~~L 25 (26)
T 2l1w_B 1 ARQRWRSSVSIVKNRARRFRMISNL 25 (26)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHC
T ss_pred CchhHHHHHHHHhCccccccccccc
Confidence 468999997 888999999998864
No 17
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=91.48 E-value=0.059 Score=53.07 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=27.6
Q ss_pred HhhCCcccccchhhhhc---------cCceEEEecCCCccccCceE
Q 044442 381 MMADQVMVRKLSACETM---------GSATTIGTDKTGTLTENRMK 417 (523)
Q Consensus 381 m~~~~ilvr~~~~~E~l---------G~v~~IcsDKTGTLT~n~m~ 417 (523)
+.+.++++|++.++|.+ .+.. |+||||||||+....
T Consensus 16 l~k~~v~ikd~~~~e~~i~~~~kgg~~kL~-VV~DfdgTLT~~~~~ 60 (297)
T 4fe3_A 16 FQKSSVRIKNPTRVEEIICGLIKGGAAKLQ-IITDFNMTLSRFSYN 60 (297)
T ss_dssp GTSTTEECSCHHHHHHHHHHHHHHHHHHEE-EEECCTTTTBCSEET
T ss_pred HhcCCeEEcChHHHHHHHHHHHhCcchhEE-EEEcCCCCceeeccC
Confidence 47789999999999874 2233 567999999986543
No 18
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=63.39 E-value=22 Score=31.36 Aligned_cols=87 Identities=11% Similarity=0.164 Sum_probs=45.7
Q ss_pred CCCccccCceEEEEEEeCCeeecccccCCCCHHHHHHHHHHHhhccCccceeccCCCceeEccChHHHHHHHHHHHHc-C
Q 044442 407 KTGTLTENRMKVTKFWLGKELVKEADASSVSPNIIKLIQEGVALNTTGSVYRETSVSDVEFSGSPTEKAILSWAVLEM-N 485 (523)
Q Consensus 407 KTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~n~~~~~~~~~~~~~~~~~GsptE~ALl~~a~~~l-g 485 (523)
..||+|-|...++++...+. .++ .+++..+.++.. ..-.|.-.|++++|. +. |
T Consensus 13 ~~~tit~gnr~vt~v~~~~g---------~~e--~elL~lAAs~E~--------------~SeHPla~AIv~~A~-~~~~ 66 (156)
T 1svj_A 13 SSGHGGRHNRQASEFIPAQG---------VDE--KTLADAAQLASL--------------ADETPEGRSIVILAK-QRFN 66 (156)
T ss_dssp --------CEEEEEEEECTT---------SCH--HHHHHHHHHTTS--------------SCCSHHHHHHHHHHH-HHTT
T ss_pred CCCceecCCCeEEEEEecCC---------CCH--HHHHHHHHHHhC--------------cCCCHHHHHHHHHHH-HhcC
Confidence 47999999999999864321 111 123332222211 112799999999994 44 5
Q ss_pred CChHHHhhccceeEEeCCCCCCceEEEEEcCceeee
Q 044442 486 MDMEEYSAISLAFFVISFMRKQMVKSTYNEDVIIFV 521 (523)
Q Consensus 486 ~~~~~~~~~~~il~~~pFnS~rKrMSVIv~~~~~~v 521 (523)
.......+. .....||++..+|+.|.+....+++
T Consensus 67 l~~~~~~~~--~~~~~~F~a~~G~~Gv~v~G~~v~v 100 (156)
T 1svj_A 67 LRERDVQSL--HATFVPFTAQSRMSGINIDNRMIRK 100 (156)
T ss_dssp CCCCCHHHH--TCEEEEEETTTTEEEEEETTEEEEE
T ss_pred CCccccccc--ccceeeccccCCCCeEEECCEEEEE
Confidence 543221100 2345799999998888777666665
No 19
>2kmv_A Copper-transporting ATPase 1; menkes, nucleotide binding protein, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} PDB: 2kmx_A*
Probab=31.42 E-value=22 Score=32.20 Aligned_cols=15 Identities=7% Similarity=-0.073 Sum_probs=13.8
Q ss_pred CccccCceEEEEEEe
Q 044442 409 GTLTENRMKVTKFWL 423 (523)
Q Consensus 409 GTLT~n~m~v~~~~~ 423 (523)
||||+|+++|+++..
T Consensus 1 GTLT~G~p~V~~v~~ 15 (185)
T 2kmv_A 1 SFTMHGTPVVNQVKV 15 (185)
T ss_dssp CCCCSCCCEEEEEEE
T ss_pred CCCcCCcEEEEEEEe
Confidence 899999999999864
Done!