AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>044444
MAQPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSWAQKRVNAFFLPGMMPMKIDVLRK
SKFLVEQISSSGSQMVFFILNLVKAIGTLMTFKPFLAQRND
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with ZIFL1 ZIFL1 ZIFL1 AT5G13750	protein from Arabidopsis thaliana	4.0e-19
BLAST match view associations BLAST with ZIF1 ZIF1 ZIF1 AT5G13740	protein from Arabidopsis thaliana	9.8e-19
BLAST match view associations BLAST with ZIFL2 ZIFL2 ZIFL2 AT3G43790	protein from Arabidopsis thaliana	4.2e-12
Back to top
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044444
        (101 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2177105 - symbol:ZIFL1 "zinc induced facilitat...   156  4.0e-19   2
TAIR|locus:2173254 - symbol:ZIF1 "zinc induced facilitato...   167  9.8e-19   2
TAIR|locus:2101109 - symbol:ZIFL2 "AT3G43790" species:370...   171  4.2e-12   1


>TAIR|locus:2177105 [details] [associations]
            symbol:ZIFL1 "zinc induced facilitator-like 1"
            species:3702 "Arabidopsis thaliana" [GO:0005215 "transporter
            activity" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0055085
            "transmembrane transport" evidence=IEA] [GO:0080167 "response to
            karrikin" evidence=IEP] InterPro:IPR001958 InterPro:IPR011701
            Pfam:PF07690 PRINTS:PR01035 GO:GO:0016021 GO:GO:0005886
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0055085 GO:GO:0005215
            GO:GO:0080167 InterPro:IPR016196 SUPFAM:SSF103473 EMBL:AB011484
            InterPro:IPR020846 PROSITE:PS50850 eggNOG:NOG309217
            HOGENOM:HOG000242165 EMBL:AY039542 EMBL:AY062867 EMBL:AY102150
            EMBL:AK318697 EMBL:AY086758 EMBL:AK221880 IPI:IPI00525646
            IPI:IPI00540772 IPI:IPI00657118 IPI:IPI00971349
            RefSeq:NP_001031877.1 RefSeq:NP_568290.3 RefSeq:NP_851036.1
            UniGene:At.19822 ProteinModelPortal:Q94BZ1 STRING:Q94BZ1
            EnsemblPlants:AT5G13750.1 GeneID:831220 KEGG:ath:AT5G13750
            TAIR:At5g13750 InParanoid:Q94BZ1 OMA:NILMNEA PhylomeDB:Q94BZ1
            ProtClustDB:CLSN2679920 Genevestigator:Q94BZ1 Uniprot:Q94BZ1
        Length = 478

 Score = 156 (60.0 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
 Identities = 30/44 (68%), Positives = 35/44 (79%)

Query:     6 QDQRGAANGIAMAGISVFKAPGPAGGGGLFSWAQKRVNAFFLPG 49
             QDQRGAANGIAM  +S+FKA GPA  G +FSW++KR  A FLPG
Sbjct:   406 QDQRGAANGIAMTAMSLFKAIGPAAAGIIFSWSEKRQGAAFLPG 449

 Score = 104 (41.7 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
 Identities = 19/27 (70%), Positives = 25/27 (92%)

Query:    72 GSQMVFFILNLVKAIGTLMTFKPFLAQ 98
             G+QMVFFILN+V A+G ++TFKPFLA+
Sbjct:   449 GTQMVFFILNVVLALGVVLTFKPFLAE 475


>TAIR|locus:2173254 [details] [associations]
            symbol:ZIF1 "zinc induced facilitator 1" species:3702
            "Arabidopsis thaliana" [GO:0005215 "transporter activity"
            evidence=IEA] [GO:0005351 "sugar:hydrogen symporter activity"
            evidence=ISS] [GO:0005886 "plasma membrane" evidence=ISM;IEA]
            [GO:0015144 "carbohydrate transmembrane transporter activity"
            evidence=ISS] [GO:0016020 "membrane" evidence=ISS] [GO:0016021
            "integral to membrane" evidence=IEA] [GO:0055085 "transmembrane
            transport" evidence=IEA] [GO:0009624 "response to nematode"
            evidence=IEP] [GO:0009705 "plant-type vacuole membrane"
            evidence=IDA] [GO:0010043 "response to zinc ion" evidence=IEP]
            [GO:0055069 "zinc ion homeostasis" evidence=IMP] InterPro:IPR001958
            InterPro:IPR011701 Pfam:PF07690 PRINTS:PR01035 GO:GO:0016021
            GO:GO:0005886 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0010043
            GO:GO:0055085 GO:GO:0009624 GO:GO:0005215 EMBL:AB006704
            GO:GO:0009705 InterPro:IPR016196 SUPFAM:SSF103473 GO:GO:0055069
            EMBL:AB011484 InterPro:IPR020846 PROSITE:PS50850 eggNOG:NOG309217
            HOGENOM:HOG000242165 EMBL:AY092979 EMBL:AY128800 IPI:IPI00516862
            RefSeq:NP_196878.2 UniGene:At.44340 ProteinModelPortal:Q8RWN2
            STRING:Q8RWN2 PRIDE:Q8RWN2 EnsemblPlants:AT5G13740.1 GeneID:831219
            KEGG:ath:AT5G13740 TAIR:At5g13740 InParanoid:Q8RWN2 OMA:MIFAIMP
            PhylomeDB:Q8RWN2 Genevestigator:Q8RWN2 Uniprot:Q8RWN2
        Length = 486

 Score = 167 (63.8 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
 Identities = 31/45 (68%), Positives = 37/45 (82%)

Query:     5 DQDQRGAANGIAMAGISVFKAPGPAGGGGLFSWAQKRVNAFFLPG 49
             DQ QRGAANGIAM  +S+FK  GPAG G LFSW+++R+NA FLPG
Sbjct:   413 DQSQRGAANGIAMTAMSLFKTVGPAGAGILFSWSERRLNAAFLPG 457

 Score = 89 (36.4 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
 Identities = 15/25 (60%), Positives = 20/25 (80%)

Query:    72 GSQMVFFILNLVKAIGTLMTFKPFL 96
             GS MVFF+LN++  +G  +TFKPFL
Sbjct:   457 GSHMVFFVLNVIVVVGVALTFKPFL 481

 Score = 43 (20.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query:     5 DQDQRGAANGIAMA-GISVFKAPGPAGGGGLFSWAQKRVNAF 45
             D+ Q  A + ++ A GI +    GPA GG L   A K  N F
Sbjct:   161 DEYQATAMSAVSTAWGIGLII--GPALGGFLAQPADKYPNVF 200


>TAIR|locus:2101109 [details] [associations]
            symbol:ZIFL2 "AT3G43790" species:3702 "Arabidopsis
            thaliana" [GO:0005351 "sugar:hydrogen symporter activity"
            evidence=ISS] [GO:0005886 "plasma membrane" evidence=ISM]
            [GO:0015144 "carbohydrate transmembrane transporter activity"
            evidence=ISS] [GO:0016020 "membrane" evidence=ISS] [GO:0016021
            "integral to membrane" evidence=IEA] [GO:0055085 "transmembrane
            transport" evidence=IEA] [GO:0009624 "response to nematode"
            evidence=IEP] InterPro:IPR011701 Pfam:PF07690 PROSITE:PS01022
            PROSITE:PS01023 GO:GO:0016021 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0055085 GO:GO:0009624
            InterPro:IPR016196 SUPFAM:SSF103473 InterPro:IPR020846
            PROSITE:PS50850 EMBL:AL162691 EMBL:BT030378 IPI:IPI00526833
            IPI:IPI00528097 PIR:T47415 RefSeq:NP_189965.2 RefSeq:NP_974382.1
            RefSeq:NP_974383.1 UniGene:At.36230 ProteinModelPortal:Q3EAQ5
            STRING:Q3EAQ5 PaxDb:Q3EAQ5 PRIDE:Q3EAQ5 EnsemblPlants:AT3G43790.2
            EnsemblPlants:AT3G43790.3 GeneID:823490 KEGG:ath:AT3G43790
            TAIR:At3g43790 eggNOG:NOG309217 HOGENOM:HOG000242165
            InParanoid:Q3EAQ5 OMA:YSIMASI PhylomeDB:Q3EAQ5
            ProtClustDB:CLSN2680885 Genevestigator:Q3EAQ5 Uniprot:Q3EAQ5
        Length = 484

 Score = 171 (65.3 bits), Expect = 4.2e-12, P = 4.2e-12
 Identities = 42/84 (50%), Positives = 53/84 (63%)

Query:     6 QDQRGAANGIAMAGISVFKAPGPAGGGGLFSWAQKRVNAFFLPGMMPMKIDVLRKSKFLV 65
             Q+QRGAANGI+M  +SVFK+ GPAGGG LFSWAQKR +A FLPG +    D +    FLV
Sbjct:   407 QNQRGAANGISMTAMSVFKSFGPAGGGVLFSWAQKRQDATFLPGQIFAPCDEM---VFLV 463

Query:    66 EQISSSGSQMVFFILNLVKAIGTL 89
               +     Q+V  IL  +  I  +
Sbjct:   464 LNLV----QLVGLILTFIPYISQI 483

 Score = 86 (35.3 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
 Identities = 16/36 (44%), Positives = 26/36 (72%)

Query:    63 FLVEQISSSGSQMVFFILNLVKAIGTLMTFKPFLAQ 98
             FL  QI +   +MVF +LNLV+ +G ++TF P+++Q
Sbjct:   447 FLPGQIFAPCDEMVFLVLNLVQLVGLILTFIPYISQ 482

 Score = 38 (18.4 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query:    27 GPAGGGGLFSWAQKRVNAF 45
             GPA GG L   A+K  N F
Sbjct:   180 GPAIGGYLAQPAEKYPNIF 198


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      101       101   0.00091  102 3  11 22  0.49    29
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  478 (51 KB)
  Total size of DFA:  93 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.27u 0.13s 11.40t   Elapsed:  00:00:01
  Total cpu time:  11.27u 0.13s 11.40t   Elapsed:  00:00:01
  Start:  Thu May  9 18:20:30 2013   End:  Thu May  9 18:20:31 2013
Back to top
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
