Query 044444
Match_columns 101
No_of_seqs 83 out of 85
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 03:22:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2615 Permease of the major 99.1 3.2E-11 6.9E-16 102.6 2.2 48 2-49 379-426 (451)
2 TIGR00880 2_A_01_02 Multidrug 89.4 0.17 3.7E-06 31.0 0.9 34 3-36 79-112 (141)
3 PF05977 MFS_3: Transmembrane 84.1 0.32 6.9E-06 41.3 0.0 35 4-38 132-166 (524)
4 PRK11646 multidrug resistance 80.3 0.91 2E-05 35.4 1.3 36 2-37 324-359 (400)
5 PRK06814 acylglycerophosphoeth 79.8 0.45 9.8E-06 41.7 -0.6 36 3-38 136-171 (1140)
6 PRK11195 lysophospholipid tran 78.9 0.27 5.8E-06 38.2 -2.1 35 3-37 116-150 (393)
7 TIGR00893 2A0114 d-galactonate 78.3 1.3 2.8E-05 31.6 1.4 34 3-36 339-372 (399)
8 TIGR00895 2A0115 benzoate tran 75.1 1 2.2E-05 32.8 0.1 33 2-34 365-397 (398)
9 TIGR00892 2A0113 monocarboxyla 74.5 3.2 7E-05 33.1 2.9 35 3-37 361-395 (455)
10 TIGR00879 SP MFS transporter, 71.9 1.3 2.9E-05 32.7 0.1 33 3-35 411-443 (481)
11 TIGR00881 2A0104 phosphoglycer 70.8 1.3 2.8E-05 31.8 -0.1 35 2-36 337-371 (379)
12 cd06174 MFS The Major Facilita 70.0 1.8 3.8E-05 30.5 0.4 57 3-92 293-349 (352)
13 PRK12382 putative transporter; 68.5 0.75 1.6E-05 34.7 -1.8 34 3-36 330-363 (392)
14 TIGR02718 sider_RhtX_FptX side 67.1 0.91 2E-05 34.5 -1.6 55 6-93 335-389 (390)
15 PRK11551 putative 3-hydroxyphe 66.1 1.7 3.6E-05 32.8 -0.4 35 3-37 336-370 (406)
16 TIGR00711 efflux_EmrB drug res 65.6 5.5 0.00012 30.6 2.4 34 3-36 118-151 (485)
17 TIGR00900 2A0121 H+ Antiporter 64.7 0.96 2.1E-05 32.4 -1.8 33 3-35 329-361 (365)
18 TIGR00890 2A0111 Oxalate/Forma 63.7 1.3 2.8E-05 31.8 -1.3 34 3-36 323-356 (377)
19 PRK14995 methyl viologen resis 62.0 0.86 1.9E-05 36.6 -2.7 37 2-38 378-414 (495)
20 TIGR00900 2A0121 H+ Antiporter 61.3 1.7 3.7E-05 31.2 -1.0 34 3-36 120-153 (365)
21 PRK10489 enterobactin exporter 60.8 1.9 4.1E-05 33.1 -0.9 34 3-36 138-171 (417)
22 PF07690 MFS_1: Major Facilita 59.5 3.1 6.7E-05 29.8 0.0 34 3-36 113-146 (352)
23 TIGR00806 rfc RFC reduced fola 58.2 3.1 6.7E-05 36.6 -0.1 32 3-34 142-173 (511)
24 PRK11646 multidrug resistance 58.1 1.3 2.8E-05 34.5 -2.3 35 3-37 127-161 (400)
25 TIGR00897 2A0118 polyol permea 56.9 2.5 5.4E-05 32.6 -0.9 56 4-92 343-398 (402)
26 TIGR00891 2A0112 putative sial 56.6 2.1 4.5E-05 31.4 -1.3 34 3-36 356-389 (405)
27 PRK10489 enterobactin exporter 56.5 1.6 3.5E-05 33.4 -1.9 35 3-37 340-374 (417)
28 PRK10213 nepI ribonucleoside t 56.3 3 6.4E-05 32.5 -0.5 34 3-36 136-169 (394)
29 TIGR00712 glpT glycerol-3-phos 55.7 3.9 8.5E-05 32.0 0.1 34 3-36 373-407 (438)
30 PRK09874 drug efflux system pr 55.0 2.5 5.3E-05 31.6 -1.1 34 3-36 134-167 (408)
31 PRK09874 drug efflux system pr 54.5 3.2 7E-05 31.0 -0.6 34 3-36 339-372 (408)
32 cd06174 MFS The Major Facilita 53.8 2.6 5.6E-05 29.7 -1.1 34 4-37 116-149 (352)
33 TIGR02332 HpaX 4-hydroxyphenyl 53.0 8.1 0.00017 30.3 1.4 33 3-35 361-393 (412)
34 PRK05122 major facilitator sup 52.5 2.2 4.9E-05 32.2 -1.7 33 3-35 330-362 (399)
35 TIGR00710 efflux_Bcr_CflA drug 52.3 3 6.6E-05 30.6 -1.0 33 4-36 122-154 (385)
36 PRK11663 regulatory protein Uh 52.2 7 0.00015 30.7 0.9 33 4-36 366-398 (434)
37 PRK03545 putative arabinose tr 51.7 3.7 8E-05 31.2 -0.7 32 4-35 126-157 (390)
38 TIGR00711 efflux_EmrB drug res 51.4 2 4.4E-05 33.0 -2.1 37 2-38 375-411 (485)
39 PRK09556 uhpT sugar phosphate 50.5 8.4 0.00018 30.5 1.2 68 2-92 376-446 (467)
40 PRK10504 putative transporter; 50.0 2.1 4.5E-05 33.3 -2.3 37 3-39 381-417 (471)
41 TIGR00893 2A0114 d-galactonate 48.4 3.9 8.5E-05 29.1 -0.9 32 4-35 111-142 (399)
42 TIGR00901 2A0125 AmpG-related 47.1 3.3 7.2E-05 30.7 -1.5 35 3-37 111-145 (356)
43 PRK10504 putative transporter; 46.3 6.9 0.00015 30.4 0.1 34 3-36 126-159 (471)
44 PRK14995 methyl viologen resis 45.4 6.3 0.00014 31.7 -0.3 33 5-37 125-157 (495)
45 TIGR00895 2A0115 benzoate tran 44.4 7.6 0.00017 28.2 0.1 33 4-36 134-166 (398)
46 PRK11273 glpT sn-glycerol-3-ph 43.6 7.2 0.00016 30.7 -0.2 33 2-34 374-407 (452)
47 PRK08633 2-acyl-glycerophospho 42.6 6.5 0.00014 34.2 -0.6 34 4-37 132-165 (1146)
48 PRK03545 putative arabinose tr 41.5 7.5 0.00016 29.5 -0.3 31 6-36 324-354 (390)
49 TIGR00899 2A0120 sugar efflux 40.0 8 0.00017 28.3 -0.4 31 6-36 318-348 (375)
50 PRK12382 putative transporter; 37.3 6 0.00013 29.9 -1.4 34 3-36 140-173 (392)
51 TIGR00788 fbt folate/biopterin 36.9 4.2 9.2E-05 33.1 -2.5 37 2-38 378-414 (468)
52 TIGR00883 2A0106 metabolite-pr 36.9 4 8.6E-05 29.5 -2.4 34 3-36 340-374 (394)
53 PRK10054 putative transporter; 35.8 13 0.00029 28.9 0.2 32 4-35 125-156 (395)
54 TIGR01299 synapt_SV2 synaptic 35.2 7.8 0.00017 34.7 -1.3 33 4-36 677-709 (742)
55 PRK12307 putative sialic acid 35.1 6.5 0.00014 29.9 -1.6 33 3-35 349-381 (426)
56 PRK03893 putative sialic acid 34.5 5.2 0.00011 31.1 -2.2 34 3-36 394-427 (496)
57 PF10555 MraY_sig1: Phospho-N- 33.0 23 0.00049 17.4 0.7 12 24-35 1-12 (13)
58 PRK15011 sugar efflux transpor 31.7 9.6 0.00021 29.3 -1.1 30 6-35 335-364 (393)
59 PF03137 OATP: Organic Anion T 31.4 16 0.00034 31.3 0.0 36 1-36 477-513 (539)
60 PRK10054 putative transporter; 31.3 11 0.00023 29.4 -1.0 57 3-93 326-382 (395)
61 PF06963 FPN1: Ferroportin1 (F 31.1 29 0.00063 29.4 1.5 22 3-24 384-405 (432)
62 PRK03633 putative MFS family t 30.3 13 0.00029 28.2 -0.5 32 3-34 313-344 (381)
63 TIGR00889 2A0110 nucleoside tr 30.3 6.9 0.00015 31.0 -2.2 35 3-37 336-371 (418)
64 KOG3764 Vesicular amine transp 29.1 57 0.0012 29.0 3.0 31 6-36 191-221 (464)
65 PRK10473 multidrug efflux syst 27.9 16 0.00035 27.6 -0.5 32 4-35 120-151 (392)
66 TIGR00887 2A0109 phosphate:H+ 27.1 48 0.001 26.7 2.0 34 3-36 420-453 (502)
67 PRK11102 bicyclomycin/multidru 25.6 14 0.00031 27.3 -1.1 32 4-35 108-139 (377)
68 TIGR00894 2A0114euk Na(+)-depe 25.0 27 0.00059 27.3 0.3 31 4-34 160-190 (465)
69 TIGR00903 2A0129 major facilit 23.6 18 0.0004 28.4 -0.9 31 4-34 107-137 (368)
70 TIGR00805 oat sodium-independe 23.5 44 0.00095 28.9 1.3 38 1-38 544-587 (633)
71 PRK15403 multidrug efflux syst 23.2 16 0.00034 28.7 -1.3 33 4-36 133-165 (413)
72 PRK15075 citrate-proton sympor 22.0 18 0.0004 28.2 -1.2 32 3-34 145-176 (434)
73 PRK10091 MFS transport protein 21.5 39 0.00084 25.8 0.5 32 4-35 120-151 (382)
74 TIGR00896 CynX cyanate transpo 20.7 21 0.00045 26.6 -1.1 33 4-36 315-347 (355)
75 PRK09705 cynX putative cyanate 20.7 25 0.00055 27.2 -0.6 33 5-37 323-355 (393)
76 PF05383 La: La domain; Inter 20.3 60 0.0013 20.5 1.1 21 56-76 12-32 (61)
77 PRK10077 xylE D-xylose transpo 20.0 43 0.00094 25.9 0.5 28 3-30 392-419 (479)
No 1
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.10 E-value=3.2e-11 Score=102.58 Aligned_cols=48 Identities=35% Similarity=0.460 Sum_probs=46.7
Q ss_pred CCCcccchhhhhhhhhhhhhhhhcccCCCCCceeeeecccccceecCC
Q 044444 2 AQPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSWAQKRVNAFFLPG 49 (101)
Q Consensus 2 naV~Q~qRGAANGls~TamSlFKAigPA~gG~lfSWAqkr~~a~flpg 49 (101)
++++|+|||++||+.+|+++++|++||+.+|++++|+|+++.+.+.||
T Consensus 379 ~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~ 426 (451)
T KOG2615|consen 379 KYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWG 426 (451)
T ss_pred hcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehH
Confidence 578999999999999999999999999999999999999999999999
No 2
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=89.43 E-value=0.17 Score=30.98 Aligned_cols=34 Identities=35% Similarity=0.443 Sum_probs=29.9
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
.+++++|+.++|+..+..++...++|..+|.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 3578999999999999999999999999887753
No 3
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=84.08 E-value=0.32 Score=41.25 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=32.3
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCceeeee
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSWA 38 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~lfSWA 38 (101)
|+.++...||++....++..+.+||+.||++++..
T Consensus 132 V~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~ 166 (524)
T PF05977_consen 132 VPKEDLPAANALNSISFNIARIIGPALGGILVAFF 166 (524)
T ss_pred ccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 78899999999999999999999999999988753
No 4
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=80.32 E-value=0.91 Score=35.36 Aligned_cols=36 Identities=33% Similarity=0.489 Sum_probs=32.1
Q ss_pred CCCcccchhhhhhhhhhhhhhhhcccCCCCCceeee
Q 044444 2 AQPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSW 37 (101)
Q Consensus 2 naV~Q~qRGAANGls~TamSlFKAigPA~gG~lfSW 37 (101)
+.+|.++||.+.|+.+....+..++||..+|.+..+
T Consensus 324 ~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 324 SLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred hcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 357889999999999999999999999999988654
No 5
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=79.80 E-value=0.45 Score=41.74 Aligned_cols=36 Identities=22% Similarity=0.127 Sum_probs=32.5
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceeeee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSWA 38 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfSWA 38 (101)
-++.++|+.|||+.+++.++...+||..+|.+..|.
T Consensus 136 ~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~ 171 (1140)
T PRK06814 136 HLNKDELLGANALVEAGTFIAILLGTIIGGLATISG 171 (1140)
T ss_pred hcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 367899999999999999999999999999987654
No 6
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=78.86 E-value=0.27 Score=38.19 Aligned_cols=35 Identities=20% Similarity=0.050 Sum_probs=31.4
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceeee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSW 37 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfSW 37 (101)
-+|.++|+.+||+..+..++-..+||..||.+..|
T Consensus 116 ~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~ 150 (393)
T PRK11195 116 LLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP 150 (393)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999989999999999988776
No 7
>TIGR00893 2A0114 d-galactonate transporter.
Probab=78.30 E-value=1.3 Score=31.58 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=30.4
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
.+|+++||.+.|+.++...+...++|...|.+..
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~ 372 (399)
T TIGR00893 339 NAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA 372 (399)
T ss_pred hcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhcc
Confidence 4688999999999999999999999999987754
No 8
>TIGR00895 2A0115 benzoate transport.
Probab=75.13 E-value=1 Score=32.76 Aligned_cols=33 Identities=21% Similarity=0.045 Sum_probs=29.3
Q ss_pred CCCcccchhhhhhhhhhhhhhhhcccCCCCCce
Q 044444 2 AQPDQDQRGAANGIAMAGISVFKAPGPAGGGGL 34 (101)
Q Consensus 2 naV~Q~qRGAANGls~TamSlFKAigPA~gG~l 34 (101)
+.+|+++||.+.|+..+...+..++||..+|.+
T Consensus 365 ~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 365 LFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 356899999999999999999999999988865
No 9
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=74.52 E-value=3.2 Score=33.08 Aligned_cols=35 Identities=17% Similarity=0.088 Sum_probs=31.5
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceeee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSW 37 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfSW 37 (101)
.++++++|.++|+.+++.++-..+||..+|.+..+
T Consensus 361 ~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~ 395 (455)
T TIGR00892 361 LVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA 395 (455)
T ss_pred HhhHHHHhhHHhHHHHHHHHHHHccccceeeeehh
Confidence 46789999999999999999999999999988754
No 10
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=71.85 E-value=1.3 Score=32.67 Aligned_cols=33 Identities=12% Similarity=-0.227 Sum_probs=26.0
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCcee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLF 35 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lf 35 (101)
.+|++.||.++|+......+...++|...|.+.
T Consensus 411 ~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~ 443 (481)
T TIGR00879 411 IFPLSLRPKGISIAVAANWLANFIVGFLFPTML 443 (481)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999888777777777666553
No 11
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=70.84 E-value=1.3 Score=31.82 Aligned_cols=35 Identities=14% Similarity=-0.079 Sum_probs=30.6
Q ss_pred CCCcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 2 AQPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 2 naV~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
+.+|++.||.++|+.++..++...++|...|.+..
T Consensus 337 ~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 371 (379)
T TIGR00881 337 ELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD 371 (379)
T ss_pred HhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 34688999999999999999999999999887754
No 12
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=69.95 E-value=1.8 Score=30.55 Aligned_cols=57 Identities=28% Similarity=0.308 Sum_probs=44.0
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceeeeecccccceecCCCCchhhHHhhhhhhhhhhhcCCCCeeehhHHHH
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSWAQKRVNAFFLPGMMPMKIDVLRKSKFLVEQISSSGSQMVFFILNL 82 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfSWAqkr~~a~flpg~~~~~~~~~~~~~~~~~~~~~~~~q~vf~~ln~ 82 (101)
.+|+++||.++|+.....++...++|...|.+... -| -+..|.+...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~----------~~-----------------------~~~~~~~~~~ 339 (352)
T cd06174 293 LAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT----------GG-----------------------YGGVFLILAA 339 (352)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------cC-----------------------cchHHHHHHH
Confidence 46789999999999999999999999998877541 12 5666777777
Q ss_pred HHHHhhhhcc
Q 044444 83 VKAIGTLMTF 92 (101)
Q Consensus 83 v~~ig~~~tf 92 (101)
+.+++.++.+
T Consensus 340 ~~~i~~i~~~ 349 (352)
T cd06174 340 LALLAALLLL 349 (352)
T ss_pred HHHHHHHHhe
Confidence 7777766553
No 13
>PRK12382 putative transporter; Provisional
Probab=68.46 E-value=0.75 Score=34.74 Aligned_cols=34 Identities=21% Similarity=0.040 Sum_probs=29.3
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
..+++.||.++|+.++...+..++||..+|.+..
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~ 363 (392)
T PRK12382 330 RVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT 363 (392)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999998887754
No 14
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=67.09 E-value=0.91 Score=34.49 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=42.2
Q ss_pred ccchhhhhhhhhhhhhhhhcccCCCCCceeeeecccccceecCCCCchhhHHhhhhhhhhhhhcCCCCeeehhHHHHHHH
Q 044444 6 QDQRGAANGIAMAGISVFKAPGPAGGGGLFSWAQKRVNAFFLPGMMPMKIDVLRKSKFLVEQISSSGSQMVFFILNLVKA 85 (101)
Q Consensus 6 Q~qRGAANGls~TamSlFKAigPA~gG~lfSWAqkr~~a~flpg~~~~~~~~~~~~~~~~~~~~~~~~q~vf~~ln~v~~ 85 (101)
.+++|++.|+.++..++...+||..+|.+..|. | .+..|.+..++.+
T Consensus 335 ~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~----------G-----------------------~~~~f~~~~~~~l 381 (390)
T TIGR02718 335 GDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF----------G-----------------------YAGGFLSGTVLAV 381 (390)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------c-----------------------cHHHHHHHHHHHH
Confidence 378999999999999999999999999875531 2 4556777677777
Q ss_pred Hhhhhccc
Q 044444 86 IGTLMTFK 93 (101)
Q Consensus 86 ig~~~tfk 93 (101)
++++++++
T Consensus 382 ~a~~~~~~ 389 (390)
T TIGR02718 382 LAILLAVR 389 (390)
T ss_pred HHHHHhcc
Confidence 77766543
No 15
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=66.12 E-value=1.7 Score=32.82 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=31.2
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceeee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSW 37 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfSW 37 (101)
.+|+++||.+.|+..+...+.-++||..+|.+..+
T Consensus 336 ~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~ 370 (406)
T PRK11551 336 FYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL 370 (406)
T ss_pred HcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc
Confidence 46889999999999999999999999999988653
No 16
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=65.65 E-value=5.5 Score=30.61 Aligned_cols=34 Identities=29% Similarity=0.291 Sum_probs=29.2
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
.+++++||.++|+......+.-.+||..+|.+..
T Consensus 118 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 151 (485)
T TIGR00711 118 IYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE 151 (485)
T ss_pred HCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence 3578999999999998888888999999887754
No 17
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=64.67 E-value=0.96 Score=32.43 Aligned_cols=33 Identities=15% Similarity=0.015 Sum_probs=29.6
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCcee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLF 35 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lf 35 (101)
.+|+++||.++|+..+..++..++||..+|.+.
T Consensus 329 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 329 RVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999888764
No 18
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=63.67 E-value=1.3 Score=31.84 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=28.6
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
.+++++||.+.|+......+.-+++|...|.+..
T Consensus 323 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 356 (377)
T TIGR00890 323 IFGPANSAANYGFLYTAKAVAGIFGGLIASHALT 356 (377)
T ss_pred HhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999998888888888887653
No 19
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=62.02 E-value=0.86 Score=36.61 Aligned_cols=37 Identities=24% Similarity=0.138 Sum_probs=34.0
Q ss_pred CCCcccchhhhhhhhhhhhhhhhcccCCCCCceeeee
Q 044444 2 AQPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSWA 38 (101)
Q Consensus 2 naV~Q~qRGAANGls~TamSlFKAigPA~gG~lfSWA 38 (101)
+.+|.+++|.+.|+.++...+.-++|++..|.++++.
T Consensus 378 ~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~~ 414 (495)
T PRK14995 378 AAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSRS 414 (495)
T ss_pred hcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999998864
No 20
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=61.26 E-value=1.7 Score=31.16 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=29.8
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
-+++++|+.++|+.....++...+||..+|.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 153 (365)
T TIGR00900 120 LVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA 153 (365)
T ss_pred cCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999887754
No 21
>PRK10489 enterobactin exporter EntS; Provisional
Probab=60.83 E-value=1.9 Score=33.06 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=29.9
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
-+++++|+.++|+.....++...+||..+|.+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~ 171 (417)
T PRK10489 138 LVGRENLMQAGAITMLTVRLGSVISPALGGLLIA 171 (417)
T ss_pred ccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 4678999999999999999999999999998764
No 22
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=59.49 E-value=3.1 Score=29.79 Aligned_cols=34 Identities=41% Similarity=0.438 Sum_probs=30.0
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
..++++|+.++|+..+..++...+||..+|.+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 146 (352)
T PF07690_consen 113 WFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS 146 (352)
T ss_dssp CCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cchhhhhhhccccccchhhhhhhcccchhhhhhh
Confidence 3577899999999999999999999999997763
No 23
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=58.21 E-value=3.1 Score=36.65 Aligned_cols=32 Identities=13% Similarity=-0.086 Sum_probs=27.8
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCce
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGL 34 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~l 34 (101)
-+|+++|+.|+|+..++..+-+++||..++.+
T Consensus 142 WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 142 LVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999998888888877764
No 24
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=58.11 E-value=1.3 Score=34.54 Aligned_cols=35 Identities=23% Similarity=0.129 Sum_probs=31.1
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceeee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSW 37 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfSW 37 (101)
.+++++||.++|+..+..++.-++||..+|.+..|
T Consensus 127 ~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~ 161 (400)
T PRK11646 127 LIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY 161 (400)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999888644
No 25
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=56.88 E-value=2.5 Score=32.57 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=42.7
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCceeeeecccccceecCCCCchhhHHhhhhhhhhhhhcCCCCeeehhHHHHH
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSWAQKRVNAFFLPGMMPMKIDVLRKSKFLVEQISSSGSQMVFFILNLV 83 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~lfSWAqkr~~a~flpg~~~~~~~~~~~~~~~~~~~~~~~~q~vf~~ln~v 83 (101)
.+++.||.+.|+.++...+.-.+||..+|.++.- -| .+-+|.+...+
T Consensus 343 ~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~----------~g-----------------------~~~~~~~~a~~ 389 (402)
T TIGR00897 343 LAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF----------FG-----------------------AIGVVWIFAAL 389 (402)
T ss_pred hCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cc-----------------------hHHHHHHHHHH
Confidence 3457899999999999999999999988877431 12 45577777777
Q ss_pred HHHhhhhcc
Q 044444 84 KAIGTLMTF 92 (101)
Q Consensus 84 ~~ig~~~tf 92 (101)
.+++.++++
T Consensus 390 ~~i~~~~~~ 398 (402)
T TIGR00897 390 YVVSAFLTA 398 (402)
T ss_pred HHHHHHHHH
Confidence 777777765
No 26
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=56.59 E-value=2.1 Score=31.43 Aligned_cols=34 Identities=26% Similarity=0.091 Sum_probs=30.0
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
.+|.++||.++|+..+..++..++||..+|.+..
T Consensus 356 ~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~ 389 (405)
T TIGR00891 356 YFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ 389 (405)
T ss_pred hCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999887754
No 27
>PRK10489 enterobactin exporter EntS; Provisional
Probab=56.47 E-value=1.6 Score=33.42 Aligned_cols=35 Identities=31% Similarity=0.211 Sum_probs=30.4
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceeee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSW 37 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfSW 37 (101)
.+|++.||.++|+..+..++-.++||...|.+..+
T Consensus 340 ~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~ 374 (417)
T PRK10489 340 QTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM 374 (417)
T ss_pred hCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH
Confidence 46788999999999888888899999999988765
No 28
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=56.30 E-value=3 Score=32.46 Aligned_cols=34 Identities=12% Similarity=-0.045 Sum_probs=29.6
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
-+++++||.++|+..+..++--.+||..+|.+..
T Consensus 136 ~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~ 169 (394)
T PRK10213 136 LVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE 169 (394)
T ss_pred HcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999887743
No 29
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=55.72 E-value=3.9 Score=31.97 Aligned_cols=34 Identities=15% Similarity=-0.047 Sum_probs=26.1
Q ss_pred CCcccchhhhhhhhhhhhhhh-hcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISVF-KAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlF-KAigPA~gG~lfS 36 (101)
..+.+.||++.|+..+...+. -++||...|.+..
T Consensus 373 ~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~ 407 (438)
T TIGR00712 373 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 407 (438)
T ss_pred hcChhheeeehhhhchHHHhhhhhhcchhHHHHHH
Confidence 357788999999998876665 3578888887765
No 30
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=55.00 E-value=2.5 Score=31.62 Aligned_cols=34 Identities=29% Similarity=0.267 Sum_probs=28.6
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
.+++++||.++|+..+..++-..+||..+|.+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 167 (408)
T PRK09874 134 QVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD 167 (408)
T ss_pred hcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999888888889988887654
No 31
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=54.48 E-value=3.2 Score=30.99 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=28.4
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
.++.++||.+.|+.++...+.-++||..+|.+..
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~ 372 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA 372 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh
Confidence 3567889999999999888889999999887753
No 32
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=53.80 E-value=2.6 Score=29.74 Aligned_cols=34 Identities=32% Similarity=0.319 Sum_probs=29.3
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCceeee
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSW 37 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~lfSW 37 (101)
.+.|+|+.++|+.....++...++|..+|.+..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 149 (352)
T cd06174 116 FPPKERGRALGLFSAGFGLGALLGPLLGGLLAES 149 (352)
T ss_pred CCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999999999998877553
No 33
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=52.97 E-value=8.1 Score=30.25 Aligned_cols=33 Identities=21% Similarity=-0.026 Sum_probs=28.9
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCcee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLF 35 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lf 35 (101)
..++++||.+.|+.++...+.-+++|...|.+.
T Consensus 361 ~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~ 393 (412)
T TIGR02332 361 SISLQARAIAIAVINATGNIGSALSPFLIGILK 393 (412)
T ss_pred ccchHHHHHHHHHHHHhhhhhhhhhhhhccccc
Confidence 468899999999999999999999998887764
No 34
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=52.46 E-value=2.2 Score=32.16 Aligned_cols=33 Identities=18% Similarity=0.044 Sum_probs=26.7
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCcee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLF 35 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lf 35 (101)
.++.++||.+.|+-++...+.-+++|...|.+.
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 362 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVA 362 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998888887777777777654
No 35
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=52.34 E-value=3 Score=30.55 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=28.5
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
.++++||.++|+..+..++.-.+||..+|.+..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 154 (385)
T TIGR00710 122 YPGEELSRIYSILMPVLALAPAVAPLLGGYILV 154 (385)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999998999998886654
No 36
>PRK11663 regulatory protein UhpC; Provisional
Probab=52.17 E-value=7 Score=30.65 Aligned_cols=33 Identities=15% Similarity=0.018 Sum_probs=28.5
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
.+.++||++.|+.++...+.-+++|...|.+..
T Consensus 366 ~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~ 398 (434)
T PRK11663 366 SHKEAAGAATGFVGLFAYLGAALSGYPLAKVLE 398 (434)
T ss_pred ccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 457899999999999999999999999887754
No 37
>PRK03545 putative arabinose transporter; Provisional
Probab=51.68 E-value=3.7 Score=31.22 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=28.0
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCcee
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGLF 35 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~lf 35 (101)
.++++||.++|+-.+..++.-++||..+|.+.
T Consensus 126 ~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~ 157 (390)
T PRK03545 126 APAGKKAQALSLLATGTALAMVLGLPLGRVIG 157 (390)
T ss_pred CChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 57899999999999999999999999887654
No 38
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=51.45 E-value=2 Score=32.96 Aligned_cols=37 Identities=5% Similarity=-0.102 Sum_probs=32.8
Q ss_pred CCCcccchhhhhhhhhhhhhhhhcccCCCCCceeeee
Q 044444 2 AQPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSWA 38 (101)
Q Consensus 2 naV~Q~qRGAANGls~TamSlFKAigPA~gG~lfSWA 38 (101)
+.+|+++||.++|+..+.-.+.-++||+..|.++...
T Consensus 375 ~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 375 SGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred hcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999998753
No 39
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=50.54 E-value=8.4 Score=30.50 Aligned_cols=68 Identities=16% Similarity=0.039 Sum_probs=46.1
Q ss_pred CCCcccchhhhhhhhhhhhhh-hhcccCCCCCceee--eecccccceecCCCCchhhHHhhhhhhhhhhhcCCCCeeehh
Q 044444 2 AQPDQDQRGAANGIAMAGISV-FKAPGPAGGGGLFS--WAQKRVNAFFLPGMMPMKIDVLRKSKFLVEQISSSGSQMVFF 78 (101)
Q Consensus 2 naV~Q~qRGAANGls~TamSl-FKAigPA~gG~lfS--WAqkr~~a~flpg~~~~~~~~~~~~~~~~~~~~~~~~q~vf~ 78 (101)
+.+|.+.||+|.|+.++...+ .-+++|..-|.+.. |. ....||. ...+.+..|.
T Consensus 376 ~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~-----g~~~~~~------------------~~~~~~~~f~ 432 (467)
T PRK09556 376 GFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKN-----GTPIFGY------------------TLTGWAGTFA 432 (467)
T ss_pred hhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccc-----ccccccc------------------cccChHHHHH
Confidence 346889999999999999886 44788998888865 41 1111220 0123677888
Q ss_pred HHHHHHHHhhhhcc
Q 044444 79 ILNLVKAIGTLMTF 92 (101)
Q Consensus 79 ~ln~v~~ig~~~tf 92 (101)
++-.+.++|.+.++
T Consensus 433 ~~~~~~~~~~~~~~ 446 (467)
T PRK09556 433 ALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777777766654
No 40
>PRK10504 putative transporter; Provisional
Probab=49.95 E-value=2.1 Score=33.32 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=33.4
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceeeeec
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSWAQ 39 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfSWAq 39 (101)
.++.+.||.++|+..+...+-.++||+.+|.+++|..
T Consensus 381 ~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 381 DLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred cCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678899999999999999999999999999988865
No 41
>TIGR00893 2A0114 d-galactonate transporter.
Probab=48.45 E-value=3.9 Score=29.14 Aligned_cols=32 Identities=16% Similarity=0.009 Sum_probs=27.0
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCcee
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGLF 35 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~lf 35 (101)
+|+++||.++|+..+..++.-.++|..+|.+.
T Consensus 111 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 142 (399)
T TIGR00893 111 FPASERATAVSIFNSAQGLGGIIGGPLVGWIL 142 (399)
T ss_pred CCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 57899999999999999888888888777553
No 42
>TIGR00901 2A0125 AmpG-related permease.
Probab=47.06 E-value=3.3 Score=30.74 Aligned_cols=35 Identities=14% Similarity=-0.079 Sum_probs=29.3
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceeee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSW 37 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfSW 37 (101)
.+++++||.++|+..+..++.-.++|..++.+.++
T Consensus 111 ~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~ 145 (356)
T TIGR00901 111 ILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP 145 (356)
T ss_pred hCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35789999999999999999998899888766544
No 43
>PRK10504 putative transporter; Provisional
Probab=46.30 E-value=6.9 Score=30.44 Aligned_cols=34 Identities=29% Similarity=0.115 Sum_probs=29.3
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
.++.++|+.++|+..+..++--.+||..+|.+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~ 159 (471)
T PRK10504 126 IVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE 159 (471)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 3578899999999999988999999999887743
No 44
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=45.39 E-value=6.3 Score=31.74 Aligned_cols=33 Identities=36% Similarity=0.275 Sum_probs=29.3
Q ss_pred cccchhhhhhhhhhhhhhhhcccCCCCCceeee
Q 044444 5 DQDQRGAANGIAMAGISVFKAPGPAGGGGLFSW 37 (101)
Q Consensus 5 ~Q~qRGAANGls~TamSlFKAigPA~gG~lfSW 37 (101)
++++||.++|+-.+...+-.++||..+|.+..+
T Consensus 125 ~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~ 157 (495)
T PRK14995 125 EEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH 157 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 678999999999999999999999999988543
No 45
>TIGR00895 2A0115 benzoate transport.
Probab=44.36 E-value=7.6 Score=28.19 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=27.7
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
.+.++||.++|+......+...++|..+|.+..
T Consensus 134 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 166 (398)
T TIGR00895 134 APKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP 166 (398)
T ss_pred cCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence 467899999999998888888888888877654
No 46
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=43.64 E-value=7.2 Score=30.73 Aligned_cols=33 Identities=15% Similarity=-0.078 Sum_probs=22.6
Q ss_pred CCCcccchhhhhhhhhhhhhhhhcc-cCCCCCce
Q 044444 2 AQPDQDQRGAANGIAMAGISVFKAP-GPAGGGGL 34 (101)
Q Consensus 2 naV~Q~qRGAANGls~TamSlFKAi-gPA~gG~l 34 (101)
+.+|.+.||.+.|+.++..-..-++ ||...|.+
T Consensus 374 ~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l 407 (452)
T PRK11273 374 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT 407 (452)
T ss_pred HHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3467888999999887765454443 57666655
No 47
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=42.60 E-value=6.5 Score=34.21 Aligned_cols=34 Identities=26% Similarity=0.087 Sum_probs=30.4
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCceeee
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSW 37 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~lfSW 37 (101)
++.++||.++|+..+..++.-.+||..+|.+..|
T Consensus 132 ~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 132 VGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred cCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999988654
No 48
>PRK03545 putative arabinose transporter; Provisional
Probab=41.55 E-value=7.5 Score=29.53 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=26.3
Q ss_pred ccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 6 QDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 6 Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
++.||.++|+.+....+-.++||..+|.+..
T Consensus 324 ~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~ 354 (390)
T PRK03545 324 PDATDVAMALFSGIFNIGIGAGALLGNQVSL 354 (390)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999998888888999999888753
No 49
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=40.01 E-value=8 Score=28.35 Aligned_cols=31 Identities=23% Similarity=0.047 Sum_probs=24.8
Q ss_pred ccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 6 QDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 6 Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
+++||.++|+.+....+-.++||..+|.+..
T Consensus 318 ~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~ 348 (375)
T TIGR00899 318 PGRAGAATTLYTNTGRVGWIIAGSVGGILAE 348 (375)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999888888888888888887643
No 50
>PRK12382 putative transporter; Provisional
Probab=37.31 E-value=6 Score=29.90 Aligned_cols=34 Identities=18% Similarity=-0.007 Sum_probs=28.1
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
.++.++||.++|+-.+..+..-.+||..+|.+..
T Consensus 140 ~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~ 173 (392)
T PRK12382 140 LVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS 173 (392)
T ss_pred hCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999888888888899988876533
No 51
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=36.88 E-value=4.2 Score=33.07 Aligned_cols=37 Identities=5% Similarity=-0.178 Sum_probs=32.9
Q ss_pred CCCcccchhhhhhhhhhhhhhhhcccCCCCCceeeee
Q 044444 2 AQPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSWA 38 (101)
Q Consensus 2 naV~Q~qRGAANGls~TamSlFKAigPA~gG~lfSWA 38 (101)
+.+|++++|+.-|+.++.+++-..+|+..||.+..|-
T Consensus 378 ~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 378 RLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred HhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5689999999999999999999999998888886653
No 52
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=36.86 E-value=4 Score=29.51 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=25.1
Q ss_pred CCcccchhhhhhhhhhhhh-hhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGIS-VFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamS-lFKAigPA~gG~lfS 36 (101)
.+|+++||.++|+..+... ....++|..+|.+..
T Consensus 340 ~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~ 374 (394)
T TIGR00883 340 LFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA 374 (394)
T ss_pred hCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence 4688999999999765543 455688888887754
No 53
>PRK10054 putative transporter; Provisional
Probab=35.82 E-value=13 Score=28.90 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=28.4
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCcee
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGLF 35 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~lf 35 (101)
+++++|+.+.|+..+..++.-++||..+|.+.
T Consensus 125 ~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 125 LSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999988764
No 54
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=35.21 E-value=7.8 Score=34.75 Aligned_cols=33 Identities=21% Similarity=0.070 Sum_probs=29.3
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
.|.+.||.+.|+..++..+.-.+||..+|.++.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~ 709 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVG 709 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999887643
No 55
>PRK12307 putative sialic acid transporter; Provisional
Probab=35.08 E-value=6.5 Score=29.87 Aligned_cols=33 Identities=12% Similarity=-0.036 Sum_probs=27.7
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCcee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLF 35 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lf 35 (101)
.+|.+.||.+.|+...+..+--.+||...|.+.
T Consensus 349 ~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~ 381 (426)
T PRK12307 349 YFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG 381 (426)
T ss_pred hCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 468899999999999988888888888877663
No 56
>PRK03893 putative sialic acid transporter; Provisional
Probab=34.53 E-value=5.2 Score=31.13 Aligned_cols=34 Identities=24% Similarity=0.126 Sum_probs=29.1
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
.+|.++||.++|+..+..++.-.+||..+|.+..
T Consensus 394 ~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~ 427 (496)
T PRK03893 394 YFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ 427 (496)
T ss_pred hCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence 4578899999999999999988899998887743
No 57
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=32.95 E-value=23 Score=17.37 Aligned_cols=12 Identities=42% Similarity=0.661 Sum_probs=9.0
Q ss_pred hcccCCCCCcee
Q 044444 24 KAPGPAGGGGLF 35 (101)
Q Consensus 24 KAigPA~gG~lf 35 (101)
|+--|..||++|
T Consensus 1 K~gTPTMGGi~~ 12 (13)
T PF10555_consen 1 KSGTPTMGGIVF 12 (13)
T ss_pred CCCCccceeEEE
Confidence 455688899876
No 58
>PRK15011 sugar efflux transporter B; Provisional
Probab=31.71 E-value=9.6 Score=29.27 Aligned_cols=30 Identities=17% Similarity=-0.029 Sum_probs=23.4
Q ss_pred ccchhhhhhhhhhhhhhhhcccCCCCCcee
Q 044444 6 QDQRGAANGIAMAGISVFKAPGPAGGGGLF 35 (101)
Q Consensus 6 Q~qRGAANGls~TamSlFKAigPA~gG~lf 35 (101)
+++||.++|+......+.-++||..+|.+.
T Consensus 335 p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~ 364 (393)
T PRK15011 335 PGQAGSATTLYTNTSRVGWIIAGSLAGIVA 364 (393)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888887777777888888887763
No 59
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=31.36 E-value=16 Score=31.30 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=0.0
Q ss_pred CCCCcccchhhhhhhhhhhhhhhhcc-cCCCCCceee
Q 044444 1 MAQPDQDQRGAANGIAMAGISVFKAP-GPAGGGGLFS 36 (101)
Q Consensus 1 ~naV~Q~qRGAANGls~TamSlFKAi-gPA~gG~lfS 36 (101)
+|.|+++||.-|-|+....+.++=.| ||..=|.++-
T Consensus 477 LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD 513 (539)
T PF03137_consen 477 LRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIID 513 (539)
T ss_dssp -------------------------------------
T ss_pred eccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHh
Confidence 58999999999999999999877654 6666555543
No 60
>PRK10054 putative transporter; Provisional
Probab=31.30 E-value=11 Score=29.41 Aligned_cols=57 Identities=16% Similarity=0.045 Sum_probs=39.7
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceeeeecccccceecCCCCchhhHHhhhhhhhhhhhcCCCCeeehhHHHH
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSWAQKRVNAFFLPGMMPMKIDVLRKSKFLVEQISSSGSQMVFFILNL 82 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfSWAqkr~~a~flpg~~~~~~~~~~~~~~~~~~~~~~~~q~vf~~ln~ 82 (101)
.+|.+.||.+-|... ...+..++||..+|.+..+. | .+..|.++.+
T Consensus 326 ~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~----------g-----------------------~~~~~~~~~~ 371 (395)
T PRK10054 326 IAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL----------P-----------------------PWSLFVILAL 371 (395)
T ss_pred hCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc----------C-----------------------hhhHHHHHHH
Confidence 357778888877543 34467788898888886531 3 5667777777
Q ss_pred HHHHhhhhccc
Q 044444 83 VKAIGTLMTFK 93 (101)
Q Consensus 83 v~~ig~~~tfk 93 (101)
.-.+..++.+|
T Consensus 372 ~~~~~~~~~~~ 382 (395)
T PRK10054 372 AIVAAWLLMLK 382 (395)
T ss_pred HHHHHHHHHHh
Confidence 77777777775
No 61
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=31.11 E-value=29 Score=29.37 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.6
Q ss_pred CCcccchhhhhhhhhhhhhhhh
Q 044444 3 QPDQDQRGAANGIAMAGISVFK 24 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFK 24 (101)
.||.++||+.||..++..++|-
T Consensus 384 ~V~~~~Rg~v~gvq~sl~~lf~ 405 (432)
T PF06963_consen 384 NVPESERGAVSGVQNSLQSLFE 405 (432)
T ss_pred cCCHHHhhHHHHHHHHHHHHHH
Confidence 5899999999999999999987
No 62
>PRK03633 putative MFS family transporter protein; Provisional
Probab=30.32 E-value=13 Score=28.17 Aligned_cols=32 Identities=19% Similarity=0.109 Sum_probs=25.4
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCce
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGL 34 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~l 34 (101)
.++++.++++++.-.+..++-.++||..+|.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l 344 (381)
T PRK03633 313 KVEHHELVAMNQALLLSYTVGSLLGPSFTAML 344 (381)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888887777788888999988876
No 63
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=30.32 E-value=6.9 Score=30.96 Aligned_cols=35 Identities=14% Similarity=0.004 Sum_probs=29.4
Q ss_pred CCcccchhhhhhhhh-hhhhhhhcccCCCCCceeee
Q 044444 3 QPDQDQRGAANGIAM-AGISVFKAPGPAGGGGLFSW 37 (101)
Q Consensus 3 aV~Q~qRGAANGls~-TamSlFKAigPA~gG~lfSW 37 (101)
.+|++.||.+.|+.. ...++-.++||..+|.+..+
T Consensus 336 ~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~ 371 (418)
T TIGR00889 336 EVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEK 371 (418)
T ss_pred HCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 468899999999997 56788889999999988653
No 64
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.12 E-value=57 Score=28.96 Aligned_cols=31 Identities=39% Similarity=0.556 Sum_probs=27.7
Q ss_pred ccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 6 QDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 6 Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
-+.||.+.|+.-+..|+---+||-.||++-.
T Consensus 191 d~er~~vmGialgfislG~lvgPpfGGilYe 221 (464)
T KOG3764|consen 191 DNERGSVMGIALGFISLGVLVGPPFGGILYE 221 (464)
T ss_pred chhhhHHHHHHHHHHhccceecCCcccchHh
Confidence 3568999999999999999999999999843
No 65
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=27.89 E-value=16 Score=27.61 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=25.3
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCcee
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGLF 35 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~lf 35 (101)
.+.++|+.++|+.....++.-.++|..+|.+.
T Consensus 120 ~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~ 151 (392)
T PRK10473 120 LDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM 151 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999988887777778887776653
No 66
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=27.12 E-value=48 Score=26.66 Aligned_cols=34 Identities=24% Similarity=0.010 Sum_probs=28.4
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
..|++.||++.|+.++...+.-.++|...|.+..
T Consensus 420 ~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~ 453 (502)
T TIGR00887 420 VFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQ 453 (502)
T ss_pred cCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhc
Confidence 3578899999999999998888888888776654
No 67
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=25.63 E-value=14 Score=27.33 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=26.2
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCcee
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGLF 35 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~lf 35 (101)
.+.++||.++|+..+...+.-.++|..+|.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 139 (377)
T PRK11102 108 FPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL 139 (377)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999888888888888776553
No 68
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=25.02 E-value=27 Score=27.31 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=26.2
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCce
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGL 34 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~l 34 (101)
.|+++||.++|+..+...+.-.++|..+|.+
T Consensus 160 ~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l 190 (465)
T TIGR00894 160 APPKERSRLLGMSTSGFQLGTFIFLPISGWL 190 (465)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999998888888888877654
No 69
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=23.57 E-value=18 Score=28.38 Aligned_cols=31 Identities=10% Similarity=-0.017 Sum_probs=27.2
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCce
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGL 34 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~l 34 (101)
.|.++||.++|+..+..++-..++|..++.+
T Consensus 107 ~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l 137 (368)
T TIGR00903 107 IREERRDLVISLLSFAMYLGIIFALAAGLKI 137 (368)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999998887766
No 70
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=23.49 E-value=44 Score=28.89 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=28.9
Q ss_pred CCCCcccchhhhhhhhhhhhhhhhcc-cCCC-----CCceeeee
Q 044444 1 MAQPDQDQRGAANGIAMAGISVFKAP-GPAG-----GGGLFSWA 38 (101)
Q Consensus 1 ~naV~Q~qRGAANGls~TamSlFKAi-gPA~-----gG~lfSWA 38 (101)
+|.|+++||.-|-|+....+.++=.| ||.. +.+..=|.
T Consensus 544 lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~sC~~W~ 587 (633)
T TIGR00805 544 LRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDVSCLHWQ 587 (633)
T ss_pred eeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhchhheec
Confidence 57899999999999999999888754 4444 33444565
No 71
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=23.15 E-value=16 Score=28.74 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=27.2
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
.+.++|+.++|+-.+...+.-.+||..||.+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~ 165 (413)
T PRK15403 133 FGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH 165 (413)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999888888899988887643
No 72
>PRK15075 citrate-proton symporter; Provisional
Probab=21.98 E-value=18 Score=28.22 Aligned_cols=32 Identities=16% Similarity=-0.036 Sum_probs=23.6
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCce
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGL 34 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~l 34 (101)
-+|+++||.++|+.....++.-.+||..|+.+
T Consensus 145 ~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 145 IATPGRKGFYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred hCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999998877666666666665543
No 73
>PRK10091 MFS transport protein AraJ; Provisional
Probab=21.54 E-value=39 Score=25.79 Aligned_cols=32 Identities=22% Similarity=0.090 Sum_probs=26.1
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCcee
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGLF 35 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~lf 35 (101)
.++++|+.++|+..+..++--.+||..+|.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 151 (382)
T PRK10091 120 IKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS 151 (382)
T ss_pred CChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence 46778999999988888888888888877654
No 74
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=20.72 E-value=21 Score=26.61 Aligned_cols=33 Identities=24% Similarity=0.148 Sum_probs=26.8
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
.+++++|++.|+..+...+.-++||...|.+..
T Consensus 315 ~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~ 347 (355)
T TIGR00896 315 RQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD 347 (355)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999888888888899988887754
No 75
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=20.71 E-value=25 Score=27.17 Aligned_cols=33 Identities=15% Similarity=-0.045 Sum_probs=27.8
Q ss_pred cccchhhhhhhhhhhhhhhhcccCCCCCceeee
Q 044444 5 DQDQRGAANGIAMAGISVFKAPGPAGGGGLFSW 37 (101)
Q Consensus 5 ~Q~qRGAANGls~TamSlFKAigPA~gG~lfSW 37 (101)
++++||++.|+..+...+.-.+||...|.+..+
T Consensus 323 ~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~ 355 (393)
T PRK09705 323 QPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSI 355 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999888888899988877553
No 76
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=20.27 E-value=60 Score=20.53 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=16.4
Q ss_pred HHhhhhhhhhhhhcCCCCeee
Q 044444 56 DVLRKSKFLVEQISSSGSQMV 76 (101)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~q~v 76 (101)
+-|++.+||.+|+..+.++.|
T Consensus 12 ~NL~~D~fL~~~~~~~~~g~V 32 (61)
T PF05383_consen 12 ENLPRDKFLRSQMDSNPDGWV 32 (61)
T ss_dssp HHHCC-HHHHHHHCTTTTTBE
T ss_pred HHhCcCHHHHHHHHhcCCCcE
Confidence 458899999999999877654
No 77
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=20.03 E-value=43 Score=25.88 Aligned_cols=28 Identities=21% Similarity=-0.038 Sum_probs=20.8
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCC
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAG 30 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~ 30 (101)
..|+++||.+.|+......+.-.++|..
T Consensus 392 ~~p~~~r~~~~g~~~~~~~~g~~~~~~~ 419 (479)
T PRK10077 392 IFPNAIRGKALAIAVAAQWIANYFVSWT 419 (479)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999888776666665443
Done!