Query 044444
Match_columns 101
No_of_seqs 83 out of 85
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 05:17:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 74.6 0.3 1E-05 35.0 -1.6 34 3-36 374-408 (451)
2 1pw4_A Glycerol-3-phosphate tr 57.9 1.9 6.4E-05 30.9 -0.3 33 3-35 147-179 (451)
3 3o7q_A L-fucose-proton symport 50.3 4.3 0.00015 29.0 0.6 32 4-35 146-177 (438)
4 4aps_A DI-OR tripeptide H+ sym 48.0 3.6 0.00012 30.2 -0.1 32 3-34 414-445 (491)
5 2gfp_A EMRD, multidrug resista 44.0 6 0.00021 27.9 0.5 31 4-35 320-350 (375)
6 2cfq_A Lactose permease; trans 41.4 2.2 7.6E-05 31.4 -2.1 33 4-36 341-374 (417)
7 2xut_A Proton/peptide symporte 38.4 3.6 0.00012 30.6 -1.4 34 3-36 433-466 (524)
8 2xut_A Proton/peptide symporte 34.8 7.7 0.00026 28.8 -0.2 34 3-36 137-173 (524)
9 1t8h_A YLMD protein sequence h 14.6 71 0.0024 24.4 1.7 30 8-37 148-189 (277)
10 1xfj_A Conserved hypothetical 13.3 83 0.0028 23.8 1.7 30 8-37 134-174 (261)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=74.55 E-value=0.3 Score=35.03 Aligned_cols=34 Identities=15% Similarity=-0.047 Sum_probs=29.9
Q ss_pred CCcccchhhhhhhhhhhhhh-hhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISV-FKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSl-FKAigPA~gG~lfS 36 (101)
.+|++.||.+.|+..+...+ ..+++|...|.+..
T Consensus 374 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~ 408 (451)
T 1pw4_A 374 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 408 (451)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999 99999998887754
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=57.88 E-value=1.9 Score=30.89 Aligned_cols=33 Identities=15% Similarity=-0.174 Sum_probs=28.9
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCcee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLF 35 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lf 35 (101)
-+++++||.++|+.....++...+||..+|.+.
T Consensus 147 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 147 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp TCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999888764
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=50.34 E-value=4.3 Score=28.96 Aligned_cols=32 Identities=13% Similarity=-0.134 Sum_probs=29.6
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCcee
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGLF 35 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~lf 35 (101)
.+.++||.++|+..+..++--.+||..+|.+.
T Consensus 146 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 146 GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999886
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=48.00 E-value=3.6 Score=30.16 Aligned_cols=32 Identities=9% Similarity=-0.201 Sum_probs=27.6
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCce
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGL 34 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~l 34 (101)
.+|++.||.+.|+..+...+.-+++|...|.+
T Consensus 414 ~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~ 445 (491)
T 4aps_A 414 LAPKAFNSQMMSMWFLSSSVGSALNAQLVTLY 445 (491)
T ss_dssp HTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGG
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999888888877765
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=44.04 E-value=6 Score=27.86 Aligned_cols=31 Identities=10% Similarity=-0.204 Sum_probs=27.0
Q ss_pred CcccchhhhhhhhhhhhhhhhcccCCCCCcee
Q 044444 4 PDQDQRGAANGIAMAGISVFKAPGPAGGGGLF 35 (101)
Q Consensus 4 V~Q~qRGAANGls~TamSlFKAigPA~gG~lf 35 (101)
+| ++||.++|+.++...+.-+++|...|.+.
T Consensus 320 ~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 350 (375)
T 2gfp_A 320 FP-FLAGTAGALVGGLQNIGSGVLASLSAMLP 350 (375)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred CC-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45 89999999999999999999999888763
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=41.43 E-value=2.2 Score=31.42 Aligned_cols=33 Identities=3% Similarity=-0.161 Sum_probs=26.5
Q ss_pred Ccccchhhhhhhh-hhhhhhhhcccCCCCCceee
Q 044444 4 PDQDQRGAANGIA-MAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 4 V~Q~qRGAANGls-~TamSlFKAigPA~gG~lfS 36 (101)
.|.+.||++.|+. .+..++...++|..+|.+..
T Consensus 341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~ 374 (417)
T 2cfq_A 341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE 374 (417)
T ss_dssp SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH
Confidence 4778899999995 66777888899999887754
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=38.39 E-value=3.6 Score=30.58 Aligned_cols=34 Identities=12% Similarity=-0.045 Sum_probs=30.1
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfS 36 (101)
.+|++.||.++|+.++...+.-.+||...|.+..
T Consensus 433 ~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 433 QAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred hCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4688999999999999999999999998887754
No 8
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=34.76 E-value=7.7 Score=28.79 Aligned_cols=34 Identities=18% Similarity=-0.044 Sum_probs=26.9
Q ss_pred CCcccchhhhhhh---hhhhhhhhhcccCCCCCceee
Q 044444 3 QPDQDQRGAANGI---AMAGISVFKAPGPAGGGGLFS 36 (101)
Q Consensus 3 aV~Q~qRGAANGl---s~TamSlFKAigPA~gG~lfS 36 (101)
.+++++||.++++ ..+..++.-++||..+|.+..
T Consensus 137 ~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 173 (524)
T 2xut_A 137 QFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK 173 (524)
T ss_dssp TCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH
T ss_pred HcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3578899877766 888888888899999887743
No 9
>1t8h_A YLMD protein sequence homologue; rbstp0554, structural genomics, unknown function, PSI, protein structure initiative; 1.80A {Geobacillus stearothermophilus} SCOP: d.194.1.2
Probab=14.57 E-value=71 Score=24.44 Aligned_cols=30 Identities=37% Similarity=0.460 Sum_probs=21.7
Q ss_pred chhhhhhhhhhhhhhhh------------cccCCCCCceeee
Q 044444 8 QRGAANGIAMAGISVFK------------APGPAGGGGLFSW 37 (101)
Q Consensus 8 qRGAANGls~TamSlFK------------AigPA~gG~lfSW 37 (101)
=||+++||.-.++..++ .|||++++-.+--
T Consensus 148 WrGt~~gI~~~tv~~m~~~~G~~~~di~a~IGPsI~~~~YEV 189 (277)
T 1t8h_A 148 WRGTAGGIAGHMVWLWQTREHIAPSDIYVAIGPAIGPCCYTV 189 (277)
T ss_dssp HHHHHTTHHHHHHHHHHHTSCCCGGGCEEEECCBCCTTTCEE
T ss_pred cHHHHhhHHHHHHHHHHHHhCCCHHHEEEEECcccCCcceeE
Confidence 38889998777666554 4899998766444
No 10
>1xfj_A Conserved hypothetical protein; structural genomics, protein structure initiative (PSI), HYP protein, alpha-beta-BETA-alpha; 1.75A {Caulobacter vibrioides} SCOP: d.194.1.2
Probab=13.29 E-value=83 Score=23.80 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=21.4
Q ss_pred chhhhhhhhhhhhhhhh-----------cccCCCCCceeee
Q 044444 8 QRGAANGIAMAGISVFK-----------APGPAGGGGLFSW 37 (101)
Q Consensus 8 qRGAANGls~TamSlFK-----------AigPA~gG~lfSW 37 (101)
=||+++||.-.++..++ .|||++++-.+--
T Consensus 134 WrGt~~gI~~~tv~~m~~~G~~~~di~a~iGP~I~~~~YEV 174 (261)
T 1xfj_A 134 WRGALDGVVQSAVDRMVELGASPANITGVVGPCIGPKSYEV 174 (261)
T ss_dssp HHHHHHTHHHHHHHHHHHTTCCGGGCEEEECSBCCTTTCEE
T ss_pred chhhHhhHHHHHHHHHHHcCCCHHHEEEEECcccCCcceeE
Confidence 38888888777666554 3889988766544
Done!