Query 044444
Match_columns 101
No_of_seqs 83 out of 85
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 05:18:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044444.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044444hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 51.5 0.51 3.7E-05 30.2 -2.3 33 3-35 340-373 (417)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 43.1 0.7 5.1E-05 30.9 -2.8 36 3-38 144-179 (447)
3 d1b26a2 c.58.1.1 (A:4-178) Glu 12.5 27 0.0019 24.0 0.6 14 80-93 76-89 (175)
4 d1s29a_ a.4.5.46 (A:) Lupus La 12.4 43 0.0032 20.5 1.6 21 56-76 25-45 (92)
5 d1xfja_ d.194.1.2 (A:) Hypothe 11.7 50 0.0036 22.9 1.9 28 9-36 131-169 (256)
6 d1jnda1 c.1.8.5 (A:2-278,A:371 11.1 32 0.0023 23.7 0.6 18 62-79 19-39 (327)
7 d1xa1a_ e.3.1.1 (A:) Regulator 10.6 26 0.0019 23.4 0.0 19 31-49 33-51 (246)
8 d1t8ha_ d.194.1.2 (A:) Hypothe 10.3 58 0.0042 22.8 1.8 30 8-37 145-186 (272)
9 d1v9la2 c.58.1.1 (A:4-179) Glu 10.1 23 0.0017 24.3 -0.5 11 25-35 61-71 (176)
10 d1dy2a_ d.169.1.5 (A:) Endosta 7.8 45 0.0033 23.2 0.3 17 83-99 27-43 (168)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=51.53 E-value=0.51 Score=30.22 Aligned_cols=33 Identities=6% Similarity=-0.082 Sum_probs=24.9
Q ss_pred CCcccchhhhhhhhhh-hhhhhhcccCCCCCcee
Q 044444 3 QPDQDQRGAANGIAMA-GISVFKAPGPAGGGGLF 35 (101)
Q Consensus 3 aV~Q~qRGAANGls~T-amSlFKAigPA~gG~lf 35 (101)
.+|++.||.+.|+..+ ..++..+++|..+|.+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~ 373 (417)
T d1pv7a_ 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp HSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999998654 45577788888877664
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=43.07 E-value=0.7 Score=30.92 Aligned_cols=36 Identities=17% Similarity=-0.039 Sum_probs=29.6
Q ss_pred CCcccchhhhhhhhhhhhhhhhcccCCCCCceeeee
Q 044444 3 QPDQDQRGAANGIAMAGISVFKAPGPAGGGGLFSWA 38 (101)
Q Consensus 3 aV~Q~qRGAANGls~TamSlFKAigPA~gG~lfSWA 38 (101)
-+++++||.++|+.....++.-.++|..++.+..|.
T Consensus 144 ~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 179 (447)
T d1pw4a_ 144 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179 (447)
T ss_dssp TCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence 468899999999999999898889988777665543
No 3
>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}
Probab=12.52 E-value=27 Score=24.03 Aligned_cols=14 Identities=50% Similarity=0.629 Sum_probs=10.8
Q ss_pred HHHHHHHhhhhccc
Q 044444 80 LNLVKAIGTLMTFK 93 (101)
Q Consensus 80 ln~v~~ig~~~tfk 93 (101)
++-|+.++.+||||
T Consensus 76 ~~ev~aLa~~MT~K 89 (175)
T d1b26a2 76 LDEVKALAFWMTWK 89 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45677888888887
No 4
>d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain {Trypanosoma brucei [TaxId: 5691]}
Probab=12.44 E-value=43 Score=20.46 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=15.6
Q ss_pred HHhhhhhhhhhhhcCCCCeee
Q 044444 56 DVLRKSKFLVEQISSSGSQMV 76 (101)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~q~v 76 (101)
.-|++.+||.+++....+..|
T Consensus 25 ~NL~~D~fL~~~m~~~~~G~V 45 (92)
T d1s29a_ 25 VNVQRDIFLKGKMAENAEGFV 45 (92)
T ss_dssp HHHTTCHHHHHHHTTSTTCCE
T ss_pred hhhccCHHHHHHHhccCCCcE
Confidence 457889999999976655544
No 5
>d1xfja_ d.194.1.2 (A:) Hypothetical protein CC0490 {Caulobacter crescentus [TaxId: 155892]}
Probab=11.73 E-value=50 Score=22.86 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=20.0
Q ss_pred hhhhhhhhhhhhhhhh-----------cccCCCCCceee
Q 044444 9 RGAANGIAMAGISVFK-----------APGPAGGGGLFS 36 (101)
Q Consensus 9 RGAANGls~TamSlFK-----------AigPA~gG~lfS 36 (101)
||+.+||...+...++ .|||++++-.+-
T Consensus 131 rG~~~gI~~~~i~~~~~~g~~~~~i~a~IGP~I~~~~YE 169 (256)
T d1xfja_ 131 RGALDGVVQSAVDRMVELGASPANITGVVGPCIGPKSYE 169 (256)
T ss_dssp HHHHHTHHHHHHHHHHHTTCCGGGCEEEECSBCCTTTCE
T ss_pred cchhcccchHHHHHHHHcCCCcccEEEEEccccccceee
Confidence 8889998877665544 677887765554
No 6
>d1jnda1 c.1.8.5 (A:2-278,A:371-420) Imaginal disc growth factor-2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=11.10 E-value=32 Score=23.71 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=11.3
Q ss_pred hhhhhhh--cC-CCCeeehhH
Q 044444 62 KFLVEQI--SS-SGSQMVFFI 79 (101)
Q Consensus 62 ~~~~~~~--~~-~~~q~vf~~ 79 (101)
+|+.++| +. .|+|++|-.
T Consensus 19 ~~~~~~id~~~~~cTHiiyaf 39 (327)
T d1jnda1 19 KLLNPDLEIALQFCSHLVYGY 39 (327)
T ss_dssp CCCHHHHHHHGGGCSEEEEEE
T ss_pred CcCHhhcCCCcccCCeEEEEE
Confidence 4566666 33 379998743
No 7
>d1xa1a_ e.3.1.1 (A:) Regulatory protein BlaR1 {Staphylococcus aureus [TaxId: 1280]}
Probab=10.61 E-value=26 Score=23.41 Aligned_cols=19 Identities=11% Similarity=0.300 Sum_probs=13.5
Q ss_pred CCceeeeecccccceecCC
Q 044444 31 GGGLFSWAQKRVNAFFLPG 49 (101)
Q Consensus 31 gG~lfSWAqkr~~a~flpg 49 (101)
.|-++++...|....+.||
T Consensus 33 ~g~~~~~n~~~~~~~y~PG 51 (246)
T d1xa1a_ 33 KDKYYIYNEKESRKRYSPN 51 (246)
T ss_dssp TTEEEEESHHHHTCEECCG
T ss_pred CCceeccCHHHhcCCCCCc
Confidence 3445667777777778899
No 8
>d1t8ha_ d.194.1.2 (A:) Hypothetical protein YlmD {Bacillus stearothermophilus [TaxId: 1422]}
Probab=10.32 E-value=58 Score=22.82 Aligned_cols=30 Identities=37% Similarity=0.460 Sum_probs=20.9
Q ss_pred chhhhhhhhhhhhhhhh------------cccCCCCCceeee
Q 044444 8 QRGAANGIAMAGISVFK------------APGPAGGGGLFSW 37 (101)
Q Consensus 8 qRGAANGls~TamSlFK------------AigPA~gG~lfSW 37 (101)
=||+.+||..-+...++ .|||++++-.+--
T Consensus 145 WRG~~~gIi~~~i~~m~~~~g~~~~~i~a~IGP~I~~~cYEV 186 (272)
T d1t8ha_ 145 WRGTAGGIAGHMVWLWQTREHIAPSDIYVAIGPAIGPCCYTV 186 (272)
T ss_dssp HHHHHTTHHHHHHHHHHHTSCCCGGGCEEEECCBCCTTTCEE
T ss_pred CchHHHHHHHHHHHHhhhhcccCcccceeEEeeeecchhhcc
Confidence 38999998766654443 5889988766543
No 9
>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}
Probab=10.06 E-value=23 Score=24.28 Aligned_cols=11 Identities=45% Similarity=0.709 Sum_probs=9.1
Q ss_pred cccCCCCCcee
Q 044444 25 APGPAGGGGLF 35 (101)
Q Consensus 25 AigPA~gG~lf 35 (101)
+.||+-||+.+
T Consensus 61 ~lGPakGGiR~ 71 (176)
T d1v9la2 61 VLGPYKGGVRF 71 (176)
T ss_dssp SSSSEEEEEEC
T ss_pred hhhcccCceeE
Confidence 57899999886
No 10
>d1dy2a_ d.169.1.5 (A:) Endostatin domain of collagen alpha1(xv) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.80 E-value=45 Score=23.16 Aligned_cols=17 Identities=41% Similarity=0.739 Sum_probs=14.4
Q ss_pred HHHHhhhhccccccccc
Q 044444 83 VKAIGTLMTFKPFLAQR 99 (101)
Q Consensus 83 v~~ig~~~tfkPfl~~~ 99 (101)
-...|+.-||++||+-+
T Consensus 27 Ar~aGL~gTFRAFLSS~ 43 (168)
T d1dy2a_ 27 ARAAGLLSTFRAFLSSH 43 (168)
T ss_dssp HHHTTCCSCEEESSCBT
T ss_pred HHHccccchhHhHhccc
Confidence 45689999999999865
Done!