BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044448
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 170/311 (54%), Gaps = 34/311 (10%)
Query: 16 EQWMVEFARTYKDQAEKEMRFKIFKKNHEF------------LRLNKFADLTREKFLASY 63
E WM++ + YK+ EK RF+IFK N ++ L LN FAD++ ++F Y
Sbjct: 67 ESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDEFKEKY 126
Query: 64 TGYKPPPTDHPHSNRSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQGSY-CCWAFTAVA 122
TG + + ++ + LN ++ + +DW ++GAVTPVK+QGS WAF+AV+
Sbjct: 127 TG---SIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSAWAFSAVS 183
Query: 123 TVEGLNKIRTGQLVTRSKHQLVDCSTLN-GCAKNFLENAFEYIRQYQRLASECVYPYQGR 181
T+E + KIRTG L S+ +L+DC + GC + +A + + QY + YPY+G
Sbjct: 184 TIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYG-IHYRNTYPYEGV 242
Query: 182 QDYYCDWWRSSASGKYGA-IRGYQYVQPATEEGLQDVVSRQPVSVAIDATW--FNFYHGG 238
Q Y C RS G Y A G + VQP E L ++ QPVSV ++A F Y GG
Sbjct: 243 QRY-C---RSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGG 298
Query: 239 VFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGS-GL 297
+F GPCGN +H V VGYG Y L++N WGT W E G +RI RG G S G+
Sbjct: 299 IFVGPCGNKVDHAVAAVGYGPN--------YILIRNSWGTGWGENGYIRIKRGTGNSYGV 350
Query: 298 CNIAANAAYPL 308
C + ++ YP+
Sbjct: 351 CGLYTSSFYPV 361
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 138/221 (62%), Gaps = 11/221 (4%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL--NG 151
S+DW ++GAVT VKDQG CWAF+ V +VEG+N IRTG LV+ S+ +L+DC T +G
Sbjct: 7 SVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTADNDG 66
Query: 152 CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGA-IRGYQYVQPAT 210
C ++NAFEYI+ L +E YPY+ + C+ R++ + I G+Q V +
Sbjct: 67 CQGGLMDNAFEYIKNNGGLITEAAYPYRAARG-TCNVARAAQNSPVVVHIDGHQDVPANS 125
Query: 211 EEGLQDVVSRQPVSVAIDATW--FNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQP 268
EE L V+ QPVSVA++A+ F FY GVFTG CG +HGV +VGYG AE +
Sbjct: 126 EEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGV---AEDGKA 182
Query: 269 YWLVKNRWGTNWDEGGSMRIFRGVGGS-GLCNIAANAAYPL 308
YW VKN WG +W E G +R+ + G S GLC IA A+YP+
Sbjct: 183 YWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPV 223
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 134/220 (60%), Gaps = 12/220 (5%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL--NG 151
S+DW ++GAVT VKDQG CWAF+ + VEG+N+I+T +LV+ S+ +LVDC T G
Sbjct: 5 SVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQNQG 64
Query: 152 CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATE 211
C ++ AFE+I+Q + +E YPY+ D CD + +A +I G++ V E
Sbjct: 65 CNGGLMDYAFEFIKQRGGITTEANYPYEAY-DGTCDVSKENAPAV--SIDGHENVPENDE 121
Query: 212 EGLQDVVSRQPVSVAIDA--TWFNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPY 269
L V+ QPVSVAIDA + F FY GVFTG CG +HGV IVGYGTT + Y
Sbjct: 122 NALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDG---TKY 178
Query: 270 WLVKNRWGTNWDEGGSMRIFRGVGG-SGLCNIAANAAYPL 308
W VKN WG W E G +R+ RG+ GLC IA A+YP+
Sbjct: 179 WTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 218
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 129/221 (58%), Gaps = 13/221 (5%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCS---TL 149
D +DW GAV +KDQG CWAF+ +A VEG+NKI TG L++ S+ +LVDC
Sbjct: 3 DYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNT 62
Query: 150 NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPA 209
GC F+ + F++I + +E YPY + C+ KY +I Y+ V
Sbjct: 63 RGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQ-CN--LDLQQEKYVSIDTYENVPYN 119
Query: 210 TEEGLQDVVSRQPVSVAIDATWFNFYH--GGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQ 267
E LQ V+ QPVSVA++A +NF H G+FTGPCG +H VTIVGYGT EG
Sbjct: 120 NEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGT----EGGI 175
Query: 268 PYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL 308
YW+VKN WGT W E G MRI R VGG G C IA A+YP+
Sbjct: 176 DYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 132/220 (60%), Gaps = 13/220 (5%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-G 151
DSIDW E GAV PVK+QG CWAF+ VA VEG+N+I TG L++ S+ QLVDC+T N G
Sbjct: 5 DSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTANHG 64
Query: 152 CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATE 211
C ++ AF++I + SE YPY+G QD C+ S+ + +I Y+ V E
Sbjct: 65 CRGGWMNPAFQFIVNNGGINSEETYPYRG-QDGICN---STVNAPVVSIDSYENVPSHNE 120
Query: 212 EGLQDVVSRQPVSVAIDATW--FNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPY 269
+ LQ V+ QPVSV +DA F Y G+FTG C + NH +T+VGYGT E + +
Sbjct: 121 QSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGT----ENDKDF 176
Query: 270 WLVKNRWGTNWDEGGSMRIFRGV-GGSGLCNIAANAAYPL 308
W+VKN WG NW E G +R R + G C I A+YP+
Sbjct: 177 WIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 128/221 (57%), Gaps = 13/221 (5%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCS---TL 149
D +DW GAV +KDQG WAF+ +A VEG+NKI TG L++ S+ +LVDC
Sbjct: 3 DYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNT 62
Query: 150 NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPA 209
GC F+ + F++I + +E YPY + C+ KY +I Y+ V
Sbjct: 63 RGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQ-CN--LDLQQEKYVSIDTYENVPYN 119
Query: 210 TEEGLQDVVSRQPVSVAIDATWFNFYH--GGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQ 267
E LQ V+ QPVSVA++A +NF H G+FTGPCG +H VTIVGYGT EG
Sbjct: 120 NEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGT----EGGI 175
Query: 268 PYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL 308
YW+VKN WGT W E G MRI R VGG G C IA A+YP+
Sbjct: 176 DYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 171 bits (433), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 128/220 (58%), Gaps = 15/220 (6%)
Query: 96 IDWNERGAVTPVKDQGSYC--CWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCS---TLN 150
+DW GAV +K QG C CWAF+A+ATVEG+NKI TG L++ S+ +L+DC
Sbjct: 5 VDWRSAGAVVDIKSQGE-CGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTR 63
Query: 151 GCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPAT 210
GC ++ + F++I + +E YPY QD C+ + KY I Y+ V
Sbjct: 64 GCNGGYITDGFQFIINNGGINTEENYPYT-AQDGECN--VDLQNEKYVTIDTYENVPYNN 120
Query: 211 EEGLQDVVSRQPVSVAIDATW--FNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQP 268
E LQ V+ QPVSVA+DA F Y G+FTGPCG +H VTIVGYGT EG
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGT----EGGID 176
Query: 269 YWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL 308
YW+VKN W T W E G MRI R VGG+G C IA +YP+
Sbjct: 177 YWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 161/307 (52%), Gaps = 29/307 (9%)
Query: 18 WMVEFARTYKDQAEKEMRFKIFKKNHEF------------LRLNKFADLTREKFLASYTG 65
WM+ + Y++ EK RF+IFK N + L LN+FADL+ ++F Y G
Sbjct: 25 WMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSNDEFNEKYVG 84
Query: 66 YKPPPTDHPHSNRSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQGSY-CCWAFTAVATV 124
T + + +N ++ +++DW ++GAVTPV+ QGS CWAF+AVATV
Sbjct: 85 SLIDATIEQSYDE----EFINEDIVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATV 140
Query: 125 EGLNKIRTGQLVTRSKHQLVDCSTLN-GCAKNFLENAFEYIRQYQRLASECVYPYQGRQD 183
EG+NKIRTG+LV S+ +LVDC + GC + A EY+ + + YPY+ +Q
Sbjct: 141 EGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAK-NGIHLRSKYPYKAKQG 199
Query: 184 YYCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVSRQPVSVAIDATW--FNFYHGGVFT 241
C G G VQP E L + +++QPVSV +++ F Y GG+F
Sbjct: 200 -TCR--AKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFE 256
Query: 242 GPCGNTPNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGS-GLCNI 300
GPCG + VT V G + Y L+KN WGT W E G +RI R G S G+C +
Sbjct: 257 GPCGTKVDGAVTAV----GYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGL 312
Query: 301 AANAAYP 307
++ YP
Sbjct: 313 YKSSYYP 319
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 167 bits (423), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 126/220 (57%), Gaps = 15/220 (6%)
Query: 96 IDWNERGAVTPVKDQGSYC--CWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCS---TLN 150
+DW GAV +K QG C WAF+A+ATVEG+NKI +G L++ S+ +L+DC
Sbjct: 5 VDWRSAGAVVDIKSQGE-CGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQNTR 63
Query: 151 GCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPAT 210
GC ++ + F++I + +E YPY QD CD + KY I Y+ V
Sbjct: 64 GCDGGYITDGFQFIINDGGINTEENYPYT-AQDGDCD--VALQDQKYVTIDTYENVPYNN 120
Query: 211 EEGLQDVVSRQPVSVAIDATW--FNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQP 268
E LQ V+ QPVSVA+DA F Y G+FTGPCG +H + IVGYGT EG
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYGT----EGGVD 176
Query: 269 YWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL 308
YW+VKN W T W E G MRI R VGG+G C IA +YP+
Sbjct: 177 YWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 126/218 (57%), Gaps = 19/218 (8%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-G 151
+ +DW +GAV P+K+QG CWAF+ V TVE +N+IRTG L++ S+ QLVDCS N G
Sbjct: 3 EHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKKNHG 62
Query: 152 CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATE 211
C + + A++YI + +E YPY+ Q A+ K I G + V E
Sbjct: 63 CKGGYFDRAYQYIIANGGIDTEANYPYKAFQG------PCRAAKKVVRIDGCKGVPQCNE 116
Query: 212 EGLQDVVSRQPVSVAIDAT--WFNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPY 269
L++ V+ QP VAIDA+ F Y GG+FTGPCG NHGV IVGYG + Y
Sbjct: 117 NALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGYG--------KDY 168
Query: 270 WLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
W+V+N WG +W E G R+ R VGG GLC IA YP
Sbjct: 169 WIVRNSWGRHWGEQGYTRMKR-VGGCGLCGIARLPFYP 205
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 127/218 (58%), Gaps = 19/218 (8%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-G 151
+ IDW ++GAVTPVK+QGS CWAF+ V+TVE +N+IRTG L++ S+ +LVDC N G
Sbjct: 3 EQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKNHG 62
Query: 152 CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATE 211
C A++YI + ++ YPY+ Q A+ K +I GY V E
Sbjct: 63 CLGGAFVFAYQYIINNGGIDTQANYPYKAVQG------PCQAASKVVSIDGYNGVPFCNE 116
Query: 212 EGLQDVVSRQPVSVAIDATWFNF--YHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPY 269
L+ V+ QP +VAIDA+ F Y G+F+GPCG NHGVTIVGY Q Y
Sbjct: 117 XALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGY--------QANY 168
Query: 270 WLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
W+V+N WG W E G +R+ R VGG GLC IA YP
Sbjct: 169 WIVRNSWGRYWGEKGYIRMLR-VGGCGLCGIARLPYYP 205
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 164 bits (415), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 129/219 (58%), Gaps = 18/219 (8%)
Query: 96 IDWNERGAVTPVKDQ---GSYCCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-G 151
+DW +GAV +K+Q GS CWAF+AVA VE +NKIRTGQL++ S+ +LVDC T + G
Sbjct: 5 VDWRSKGAVNSIKNQKQCGS--CWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASHG 62
Query: 152 CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATE 211
C ++ NAF+YI + ++ YPY Q C +R + +I G+Q V E
Sbjct: 63 CNGGWMNNAFQYIITNGGIDTQQNYPYSAVQG-SCKPYRL----RVVSINGFQRVTRNNE 117
Query: 212 EGLQDVVSRQPVSVAIDATW--FNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPY 269
LQ V+ QPVSV ++A F Y G+FTGPCG NHGV IVGYGT + + Y
Sbjct: 118 SALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGT----QSGKNY 173
Query: 270 WLVKNRWGTNWDEGGSMRIFRGVGGS-GLCNIAANAAYP 307
W+V+N WG NW G + + R V S GLC IA +YP
Sbjct: 174 WIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYP 212
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 161 bits (408), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 125/218 (57%), Gaps = 19/218 (8%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-G 151
+ IDW ++GAVTPVK+QG CWAF+ V+TVE +N+IRTG L++ S+ QLVDC+ N G
Sbjct: 3 EQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKKNHG 62
Query: 152 CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATE 211
C A++YI + +E YPY+ Q A+ K I GY+ V E
Sbjct: 63 CKGGAFVYAYQYIIDNGGIDTEANYPYKAVQG------PCRAAKKVVRIDGYKGVPHCNE 116
Query: 212 EGLQDVVSRQPVSVAIDAT--WFNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPY 269
L+ V+ QP VAIDA+ F Y G+F+GPCG NHGV IVGY + Y
Sbjct: 117 NALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGY--------WKDY 168
Query: 270 WLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
W+V+N WG W E G +R+ R VGG GLC IA YP
Sbjct: 169 WIVRNSWGRYWGEQGYIRMKR-VGGCGLCGIARLPYYP 205
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 126/219 (57%), Gaps = 19/219 (8%)
Query: 96 IDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-GCA 153
+DW ++GAVTPVK+QGS CWAF+AV T+EG+ KIRTG L S+ +L+DC + GC
Sbjct: 5 VDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRSYGCN 64
Query: 154 KNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGA-IRGYQYVQPATEE 212
+ +A + + QY + YPY+G Q Y RS G Y A G + VQP E
Sbjct: 65 GGYPWSALQLVAQYG-IHYRNTYPYEGVQRY----CRSREKGPYAAKTDGVRQVQPYNEG 119
Query: 213 GLQDVVSRQPVSVAIDATW--FNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYW 270
L ++ QPVSV ++A F Y GG+F GPCGN +H V VGYG Y
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN--------YI 171
Query: 271 LVKNRWGTNWDEGGSMRIFRGVGGS-GLCNIAANAAYPL 308
L+KN WGT W E G +RI RG G S G+C + ++ YP+
Sbjct: 172 LIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/225 (41%), Positives = 128/225 (56%), Gaps = 23/225 (10%)
Query: 92 FYDSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN 150
+ +SIDW E+GAVTPVK+Q CWAF+ VAT+EG+NKI TGQL++ S+ +L+DC +
Sbjct: 1 YPESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRS 60
Query: 151 -GCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGA---IRGYQYV 206
GC + + +Y+ + +E YPY+ +Q R A K G I GY+YV
Sbjct: 61 HGCDGGYQTTSLQYVVD-NGVHTEREYPYEKKQG------RCRAKDKKGPKVYITGYKYV 113
Query: 207 QPATEEGLQDVVSRQPVSVAIDA--TWFNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAE 264
E L ++ QPVSV D+ F FY GG++ GPCG +H VT VGYG T
Sbjct: 114 PANDEISLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGKT---- 169
Query: 265 GQQPYWLVKNRWGTNWDEGGSMRIFRGVGGS-GLCNIAANAAYPL 308
Y L+KN WG NW E G +RI R G S G C + ++ +P+
Sbjct: 170 ----YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPI 210
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 125/219 (57%), Gaps = 19/219 (8%)
Query: 96 IDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-GCA 153
+DW ++GAVTPVK+QGS CWAF+AV T+EG+ KIRTG L S+ +L+DC + GC
Sbjct: 5 VDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCN 64
Query: 154 KNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGA-IRGYQYVQPATEE 212
+ +A + + QY + YPY+G Q Y RS G Y A G + VQP +
Sbjct: 65 GGYPWSALQLVAQYG-IHYRNTYPYEGVQRY----CRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 213 GLQDVVSRQPVSVAIDATW--FNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYW 270
L ++ QPVSV + A F Y GG+F GPCGN +H V VGYG Y
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN--------YI 171
Query: 271 LVKNRWGTNWDEGGSMRIFRGVGGS-GLCNIAANAAYPL 308
L+KN WGT W E G +RI RG G S G+C + ++ YP+
Sbjct: 172 LIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 125/219 (57%), Gaps = 19/219 (8%)
Query: 96 IDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-GCA 153
+DW ++GAVTPVK+QGS CWAF+AV T+EG+ KIRTG L S+ +L+DC + GC
Sbjct: 5 VDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCN 64
Query: 154 KNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGA-IRGYQYVQPATEE 212
+ +A + + QY + YPY+G Q Y RS G Y A G + VQP +
Sbjct: 65 GGYPWSALQLVAQYG-IHYRNTYPYEGVQRY----CRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 213 GLQDVVSRQPVSVAIDATW--FNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYW 270
L ++ QPVSV + A F Y GG+F GPCGN +H V VGYG Y
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN--------YI 171
Query: 271 LVKNRWGTNWDEGGSMRIFRGVGGS-GLCNIAANAAYPL 308
L+KN WGT W E G +RI RG G S G+C + ++ YP+
Sbjct: 172 LIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 127/221 (57%), Gaps = 16/221 (7%)
Query: 96 IDWNERGAVTPVKDQ---GSYCCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNG- 151
+DW RG VTPVKDQ GS CWAF+ +EG + +TG+LV+ S+ +L+DCS G
Sbjct: 11 VDWRSRGCVTPVKDQRDCGS--CWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGN 68
Query: 152 --CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPA 209
C+ + +AF+Y+ + SE YPY R D C R+ + K I G++ V
Sbjct: 69 QSCSGGEMNDAFQYVLDSGGICSEDAYPYLAR-DEEC---RAQSCEKVVKILGFKDVPRR 124
Query: 210 TEEGLQDVVSRQPVSVAIDATW--FNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQ 267
+E ++ +++ PVS+AI+A F FYH GVF CG +HGV +VGYGT E+ ++
Sbjct: 125 SEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKES--KK 182
Query: 268 PYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL 308
+W++KN WGT W G M + G G C + +A++P+
Sbjct: 183 DFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPV 223
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 126/219 (57%), Gaps = 19/219 (8%)
Query: 96 IDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-GCA 153
+DW ++GAVTPVK+QGS WAF+AV T+EG+ KIRTG L S+ +L+DC + GC
Sbjct: 5 VDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCN 64
Query: 154 KNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGA-IRGYQYVQPATEE 212
+ +A + + QY + YPY+G Q Y C RS G Y A G + VQP E
Sbjct: 65 GGYPWSALQLVAQYG-IHYRNTYPYEGVQRY-C---RSREKGPYAAKTDGVRQVQPYNEG 119
Query: 213 GLQDVVSRQPVSVAIDATW--FNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYW 270
L ++ QPVSV ++A F Y GG+F GPCGN +H V VGYG Y
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN--------YI 171
Query: 271 LVKNRWGTNWDEGGSMRIFRGVGGS-GLCNIAANAAYPL 308
L+KN WGT W E G +RI RG G S G+C + ++ YP+
Sbjct: 172 LIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 126/219 (57%), Gaps = 19/219 (8%)
Query: 96 IDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-GCA 153
+DW ++GAVTPVK+QGS WAF+AV T+EG+ KIRTG L S+ +L+DC + GC
Sbjct: 5 VDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRSYGCN 64
Query: 154 KNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGA-IRGYQYVQPATEE 212
+ +A + + QY + YPY+G Q Y C RS G Y A G + VQP E
Sbjct: 65 GGYPWSALQLVAQYG-IHYRNTYPYEGVQRY-C---RSREKGPYAAKTDGVRQVQPYNEG 119
Query: 213 GLQDVVSRQPVSVAIDATW--FNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYW 270
L ++ QPVSV ++A F Y GG+F GPCGN +H V VGYG Y
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN--------YI 171
Query: 271 LVKNRWGTNWDEGGSMRIFRGVGGS-GLCNIAANAAYPL 308
L+KN WGT W E G +RI RG G S G+C + ++ YP+
Sbjct: 172 LIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 162/315 (51%), Gaps = 37/315 (11%)
Query: 16 EQWMVEFARTYKDQAEKEMRFKIFKKNHEF----------------LRLNKFADLTREKF 59
E W + Y ++ ++ R I++KN ++ L +N D+T E+
Sbjct: 12 ELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEV 71
Query: 60 LASYTGYKPPPTDHPHSNRSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQGSY-CCWAF 118
+ TG K P + H SN + + DS+D+ ++G VTPVK+QG CWAF
Sbjct: 72 VQKMTGLKVPLS-HSRSNDTLYIPEWEGRAP---DSVDYRKKGYVTPVKNQGQCGSCWAF 127
Query: 119 TAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-GCAKNFLENAFEYIRQYQRLASECVYP 177
++V +EG K +TG+L+ S LVDC + N GC ++ NAF+Y+++ + + SE YP
Sbjct: 128 SSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYP 187
Query: 178 YQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVSRQ-PVSVAIDA--TWFNF 234
Y G Q+ C + + +GK RGY+ + E+ L+ V+R PVSVAIDA T F F
Sbjct: 188 YVG-QEESCMY---NPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQF 243
Query: 235 YHGGVFTGPCGNTP--NHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGV 292
Y GV+ N+ NH V VGYG + +W++KN WG NW G + + R
Sbjct: 244 YSKGVYYDESCNSDNLNHAVLAVGYGI----QKGNKHWIIKNSWGENWGNKGYILMARNK 299
Query: 293 GGSGLCNIAANAAYP 307
+ C IA A++P
Sbjct: 300 NNA--CGIANLASFP 312
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 125/219 (57%), Gaps = 19/219 (8%)
Query: 96 IDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-GCA 153
+DW ++GAVTPVK+QGS WAF+AV T+EG+ KIRTG L S+ +L+DC + GC
Sbjct: 5 VDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCN 64
Query: 154 KNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGA-IRGYQYVQPATEE 212
+ +A + + QY + YPY+G Q Y C RS G Y A G + VQP +
Sbjct: 65 GGYPWSALQLVAQYG-IHYRNTYPYEGVQRY-C---RSREKGPYAAKTDGVRQVQPYNQG 119
Query: 213 GLQDVVSRQPVSVAIDATW--FNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYW 270
L ++ QPVSV + A F Y GG+F GPCGN +H V VGYG Y
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN--------YI 171
Query: 271 LVKNRWGTNWDEGGSMRIFRGVGGS-GLCNIAANAAYPL 308
L+KN WGT W E G +RI RG G S G+C + ++ YP+
Sbjct: 172 LIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 110/333 (33%), Positives = 163/333 (48%), Gaps = 53/333 (15%)
Query: 6 HKTGNIAAKHEQWMVEFARTYKDQAEKEMRFKIFKKNHEFLRL----------------N 49
HK + W + + YK++ E+ +R I++KN +F+ L N
Sbjct: 3 HKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMN 62
Query: 50 KFADLTREKFLASYTGYKPPPTDHPHSNRSNWFKNL---NSSKMSFYDSIDWNERGAVTP 106
D+T E+ ++ + + P S W +N+ ++ DS+DW E+G VT
Sbjct: 63 HLGDMTSEEVMSLMSSLRVP---------SQWQRNITYKSNPNRILPDSVDWREKGCVTE 113
Query: 107 VKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL----NGCAKNFLENAF 161
VK QGS WAF+AV +E K++TG+LV+ S LVDCST GC F+ AF
Sbjct: 114 VKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAF 173
Query: 162 EYIRQYQRLASECVYPYQGRQDYYCDW---WRSSASGKYGAIRGYQYVQPATEEGLQDVV 218
+YI + + S+ YPY+ D C + +R++ KY + E+ L++ V
Sbjct: 174 QYIIDNKGIDSDASYPYKA-MDQKCQYDSKYRAATCSKYTEL------PYGREDVLKEAV 226
Query: 219 SRQ-PVSVAIDATW--FNFYHGGVFTGP-CGNTPNHGVTIVGYGTTTEAEGQQPYWLVKN 274
+ + PVSV +DA F Y GV+ P C NHGV +VGYG E YWLVKN
Sbjct: 227 ANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKE----YWLVKN 282
Query: 275 RWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
WG N+ E G +R+ R G C IA+ +YP
Sbjct: 283 SWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 313
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 148 bits (373), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 111/321 (34%), Positives = 161/321 (50%), Gaps = 45/321 (14%)
Query: 15 HEQWMVEFARTYK-------DQAEKEMRFK-----IFKKNHEFLR--------LNKFADL 54
EQW +F T+K ++ +++ FK I + N +F + +N+F D+
Sbjct: 24 QEQWS-QFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDM 82
Query: 55 TREKFLASYTGYKPPPTDHPHSNRSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQGSY- 113
++E+FLA K HP + R + SSK S+DW AV+ VKDQG
Sbjct: 83 SKEEFLAYVNRGKAQKPKHPENLRMPYV----SSKKPLAASVDWRSN-AVSEVKDQGQCG 137
Query: 114 CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL---NGCAKNFLENAFEYIRQYQRL 170
W+F+ VEG ++ G+L + S+ L+DCS+ GC ++++AF YI Y +
Sbjct: 138 SSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDY-GI 196
Query: 171 ASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVSRQ-PVSVAIDA 229
SE YPY+ + DY C R +S + GY + E L D V + PV+VAIDA
Sbjct: 197 MSESAYPYEAQGDY-C---RFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDA 252
Query: 230 T-WFNFYHGGVFTGPCGNTP--NHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSM 286
T FY GG+F N NHGV +VGYG+ + Q YW++KN WG+ W E G
Sbjct: 253 TDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGS----DNGQDYWILKNSWGSGWGESGYW 308
Query: 287 RIFRGVGGSGLCNIAANAAYP 307
R R G + C IA A+YP
Sbjct: 309 RQVRNYGNN--CGIATAASYP 327
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 147 bits (371), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 124/219 (56%), Gaps = 13/219 (5%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-GC 152
SIDW +GAVTPVK+QG+ WAF+ +ATVEG+NKI TG L+ S+ +LVDC + GC
Sbjct: 4 SIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGC 63
Query: 153 AKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEE 212
+ + +Y+ S+ VYPYQ +Q Y C + G I GY+ V E
Sbjct: 64 KGGYQTTSLQYVANNGVHTSK-VYPYQAKQ-YKCR--ATDKPGPKVKITGYKRVPSNXET 119
Query: 213 GLQDVVSRQPVSVAIDATW--FNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYW 270
++ QP+SV ++A F Y GVF GPCG +H VT VGYGT+ +G+ Y
Sbjct: 120 SFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTS---DGKN-YI 175
Query: 271 LVKNRWGTNWDEGGSMRIFRGVGGS-GLCNIAANAAYPL 308
++KN WG NW E G MR+ R G S G C + ++ YP
Sbjct: 176 IIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPF 214
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 125/219 (57%), Gaps = 13/219 (5%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-G 151
+++DW ++GAVTPV+ QGS CWAF+AVATVEG+NKIRTG+LV S+ +LVDC + G
Sbjct: 3 ENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHG 62
Query: 152 CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATE 211
C + A EY+ + + YPY+ +Q G G VQP E
Sbjct: 63 CKGGYPPYALEYVAK-NGIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGRVQPNNE 118
Query: 212 EGLQDVVSRQPVSVAIDATW--FNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPY 269
L + +++QPVSV +++ F Y GG+F GPCG +H VT VGYG + Y
Sbjct: 119 GNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKG----Y 174
Query: 270 WLVKNRWGTNWDEGGSMRIFRGVGGS-GLCNIAANAAYP 307
L+KN WGT W E G +RI R G S G+C + ++ YP
Sbjct: 175 ILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 213
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 133/221 (60%), Gaps = 17/221 (7%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-G 151
DS+D+ E+G VTPVK+QG CWAF++V +EG K +TG+L+ S LVDC + N G
Sbjct: 3 DSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDG 62
Query: 152 CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATE 211
C ++ NAF+Y+++ + + SE YPY G Q+ C + + +GK RGY+ + E
Sbjct: 63 CGGGYMTNAFQYVQKNRGIDSEDAYPYVG-QEESCMY---NPTGKAAKCRGYREIPEGNE 118
Query: 212 EGLQDVVSR-QPVSVAIDA--TWFNFYHGGVFTGPCGNTP--NHGVTIVGYGTTTEAEGQ 266
+ L+ V+R PVSVAIDA T F FY GV+ N+ NH V VGYG E++G
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG---ESKGN 175
Query: 267 QPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
+ +W++KN WG NW GG +++ R + C IA A++P
Sbjct: 176 K-HWIIKNSWGENWGMGGYIKMARNKNNA--CGIANLASFP 213
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 124/219 (56%), Gaps = 13/219 (5%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-G 151
+++DW ++GAVTPV+ QGS CWAF+AVATVEG+NKIRTG+LV S+ +LVDC + G
Sbjct: 3 ENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHG 62
Query: 152 CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATE 211
C + A EY+ + + YPY+ +Q G G VQP E
Sbjct: 63 CKGGYPPYALEYVAK-NGIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGRVQPNNE 118
Query: 212 EGLQDVVSRQPVSVAIDATW--FNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPY 269
L + +++QPVSV +++ F Y GG+F GPCG H VT VGYG + Y
Sbjct: 119 GNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGKG----Y 174
Query: 270 WLVKNRWGTNWDEGGSMRIFRGVGGS-GLCNIAANAAYP 307
L+KN WGT W E G +RI R G S G+C + ++ YP
Sbjct: 175 ILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 213
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 127/221 (57%), Gaps = 17/221 (7%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-G 151
DS+D+ ++G VTPVK+QG CWAF++V +EG K +TG+L+ S LVDC + N G
Sbjct: 1 DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDG 60
Query: 152 CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATE 211
C ++ NAF+Y+++ + + SE YPY G Q+ C + + +GK RGY+ + E
Sbjct: 61 CGGGYMTNAFQYVQKNRGIDSEDAYPYVG-QEESCMY---NPTGKAAKCRGYREIPEGNE 116
Query: 212 EGLQDVVSR-QPVSVAIDA--TWFNFYHGGVFTGPCGNTP--NHGVTIVGYGTTTEAEGQ 266
+ L+ V+R PVSVAIDA T F FY GV+ N+ NH V VGYG +
Sbjct: 117 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI----QKG 172
Query: 267 QPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
+W++KN WG NW G + + R + C IA A++P
Sbjct: 173 NKHWIIKNSWGENWGNKGYILMARNKNNA--CGIANLASFP 211
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 127/221 (57%), Gaps = 17/221 (7%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-G 151
DS+D+ ++G VTPVK+QG CWAF++V +EG K +TG+L+ S LVDC + N G
Sbjct: 2 DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDG 61
Query: 152 CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATE 211
C ++ NAF+Y+++ + + SE YPY G Q+ C + + +GK RGY+ + E
Sbjct: 62 CGGGYMTNAFQYVQKNRGIDSEDAYPYVG-QEESCMY---NPTGKAAKCRGYREIPEGNE 117
Query: 212 EGLQDVVSR-QPVSVAIDA--TWFNFYHGGVFTGPCGNTP--NHGVTIVGYGTTTEAEGQ 266
+ L+ V+R PVSVAIDA T F FY GV+ N+ NH V VGYG +
Sbjct: 118 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI----QKG 173
Query: 267 QPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
+W++KN WG NW G + + R + C IA A++P
Sbjct: 174 NKHWIIKNSWGENWGNKGYILMARNKNNA--CGIANLASFP 212
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 127/221 (57%), Gaps = 17/221 (7%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-G 151
DS+D+ ++G VTPVK+QG CWAF++V +EG K +TG+L+ S LVDC + N G
Sbjct: 3 DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDG 62
Query: 152 CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATE 211
C ++ NAF+Y+++ + + SE YPY G Q+ C + + +GK RGY+ + E
Sbjct: 63 CGGGYMTNAFQYVQKNRGIDSEDAYPYVG-QEESCMY---NPTGKAAKCRGYREIPEGNE 118
Query: 212 EGLQDVVSR-QPVSVAIDA--TWFNFYHGGVFTGPCGNTP--NHGVTIVGYGTTTEAEGQ 266
+ L+ V+R PVSVAIDA T F FY GV+ N+ NH V VGYG +
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI----QKG 174
Query: 267 QPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
+W++KN WG NW G + + R + C IA A++P
Sbjct: 175 NKHWIIKNSWGENWGNKGYILMARNKNNA--CGIANLASFP 213
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 127/221 (57%), Gaps = 17/221 (7%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-G 151
DS+D+ ++G VTPVK+QG CWAF++V +EG K +TG+L+ S LVDC + N G
Sbjct: 5 DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDG 64
Query: 152 CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATE 211
C ++ NAF+Y+++ + + SE YPY G Q+ C + + +GK RGY+ + E
Sbjct: 65 CGGGYMTNAFQYVQKNRGIDSEDAYPYVG-QEESCMY---NPTGKAAKCRGYREIPEGNE 120
Query: 212 EGLQDVVSR-QPVSVAIDA--TWFNFYHGGVFTGPCGNTP--NHGVTIVGYGTTTEAEGQ 266
+ L+ V+R PVSVAIDA T F FY GV+ N+ NH V VGYG +
Sbjct: 121 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI----QKG 176
Query: 267 QPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
+W++KN WG NW G + + R + C IA A++P
Sbjct: 177 NKHWIIKNSWGENWGNKGYILMARNKNNA--CGIANLASFP 215
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 122/223 (54%), Gaps = 19/223 (8%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL--- 149
DS+DW E+G VT VK QGS CWAF+AV +E K++TG+LV+ S LVDCST
Sbjct: 3 DSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKKYG 62
Query: 150 -NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQP 208
GC F+ AF+YI + + S+ YPY+ D C + ++ + R Y +
Sbjct: 63 NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKA-MDQKCQY---DSAYRAATCRKYTELPY 118
Query: 209 ATEEGLQDVVSRQ-PVSVAIDATW--FNFYHGGVFTGP-CGNTPNHGVTIVGYGTTTEAE 264
E+ L++ V+ + PVSV +DA F Y GV+ P C NHGV +VGYG E
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKE 178
Query: 265 GQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
YWLVKN WG N+ E G +R+ R G C IA+ +YP
Sbjct: 179 ----YWLVKNSWGHNFGEKGYIRMARNKGNH--CGIASFPSYP 215
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 122/227 (53%), Gaps = 27/227 (11%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL--- 149
DS+DW E+G VT VK QGS CWAF+AV +E K++TG+LVT S LVDCST
Sbjct: 3 DSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEKYG 62
Query: 150 -NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDW---WRSSASGKYGAIRGYQY 205
GC F+ AF+YI + + S+ YPY+ D C + +R++ KY +
Sbjct: 63 NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKA-MDQKCQYDSKYRAATCSKYTEL----- 116
Query: 206 VQPATEEGL--QDVVSRQPVSVAIDATW--FNFYHGGVFTGP-CGNTPNHGVTIVGYGTT 260
P E + + V ++ PVSV +DA F Y GV+ P C NHGV +VGYG
Sbjct: 117 --PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL 174
Query: 261 TEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
E YWLVKN WG N+ E G +R+ R G C IA+ +YP
Sbjct: 175 NGKE----YWLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 215
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 121/223 (54%), Gaps = 19/223 (8%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL--- 149
DS+DW E+G VT VK QGS CWAF+AV +E K++TG+LV+ S LVDCST
Sbjct: 3 DSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYG 62
Query: 150 -NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQP 208
GC F+ AF+YI + + S+ YPY+ D C + + + R Y +
Sbjct: 63 NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKA-MDQKCQY---DSKYRAATCRKYTELPY 118
Query: 209 ATEEGLQDVVSRQ-PVSVAIDATW--FNFYHGGVFTGP-CGNTPNHGVTIVGYGTTTEAE 264
E+ L++ V+ + PVSV +DA F Y GV+ P C NHGV +VGYG E
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKE 178
Query: 265 GQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
YWLVKN WG N+ E G +R+ R G C IA+ +YP
Sbjct: 179 ----YWLVKNSWGHNFGEKGYIRMARNKGNH--CGIASFPSYP 215
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 137 bits (345), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 122/227 (53%), Gaps = 27/227 (11%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL--- 149
DS+DW E+G VT VK QGS CWAF+AV +E K++TG+LV+ S LVDCST
Sbjct: 3 DSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYG 62
Query: 150 -NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDW---WRSSASGKYGAIRGYQY 205
GC F+ AF+YI + + S+ YPY+ D C + +R++ KY +
Sbjct: 63 NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKA-MDQKCQYDSKYRAATCSKYTEL----- 116
Query: 206 VQPATEEGL--QDVVSRQPVSVAIDATW--FNFYHGGVFTGP-CGNTPNHGVTIVGYGTT 260
P E + + V ++ PVSV +DA F Y GV+ P C NHGV +VGYG
Sbjct: 117 --PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL 174
Query: 261 TEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
E YWLVKN WG N+ E G +R+ R G C IA+ +YP
Sbjct: 175 NGKE----YWLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 215
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 126/221 (57%), Gaps = 17/221 (7%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-G 151
DSID+ ++G VTPVK+QG CWAF++V +EG K +TG+L+ S LVDC + N G
Sbjct: 3 DSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDG 62
Query: 152 CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATE 211
C ++ NAF+Y+++ + + SE YPY G QD C + + +GK RGY+ + E
Sbjct: 63 CGGGYMTNAFQYVQRNRGIDSEDAYPYVG-QDESCMY---NPTGKAAKCRGYREIPEGNE 118
Query: 212 EGLQDVVSR-QPVSVAIDA--TWFNFYHGGVF--TGPCGNTPNHGVTIVGYGTTTEAEGQ 266
+ L+ V+R PVSVAIDA T F FY GV+ + NH V VGYG +
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGI----QKG 174
Query: 267 QPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
+W++KN WG +W G + + R + C IA A++P
Sbjct: 175 NKHWIIKNSWGESWGNKGYILMARNKNNA--CGIANLASFP 213
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 122/227 (53%), Gaps = 27/227 (11%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL--- 149
DS+DW E+G VT VK QGS CWAF+AV +E K++TG+LV+ S LVDCST
Sbjct: 6 DSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYG 65
Query: 150 -NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDW---WRSSASGKYGAIRGYQY 205
GC F+ AF+YI + + S+ YPY+ D C + +R++ KY +
Sbjct: 66 NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKA-MDQKCQYDSKYRAATCSKYTEL----- 119
Query: 206 VQPATEEGL--QDVVSRQPVSVAIDATW--FNFYHGGVFTGP-CGNTPNHGVTIVGYGTT 260
P E + + V ++ PVSV +DA F Y GV+ P C NHGV +VGYG
Sbjct: 120 --PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL 177
Query: 261 TEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
E YWLVKN WG N+ E G +R+ R G C IA+ +YP
Sbjct: 178 NGKE----YWLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 218
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 120/221 (54%), Gaps = 15/221 (6%)
Query: 94 DSIDWNERGAVTPVKDQGSYC--CWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN- 150
+S+DW +GAVTPVK QG YC CWAF+ VATVEG+NKI+TG LV S+ +LVDC +
Sbjct: 3 ESVDWRAKGAVTPVKHQG-YCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQSY 61
Query: 151 GCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPAT 210
GC + + + +Y+ Q + YPY +Q + G G VQ
Sbjct: 62 GCNRGYQSTSLQYVAQ-NGIHLRAKYPYIAKQQ---TCRANQVGGPKVKTNGVGRVQSNN 117
Query: 211 EEGLQDVVSRQPVSVAIDATWFNF--YHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQP 268
E L + ++ QPVSV +++ +F Y GG+F G CG +H VT V G +
Sbjct: 118 EGSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAV----GYGKSGGKG 173
Query: 269 YWLVKNRWGTNWDEGGSMRIFRGVGGS-GLCNIAANAAYPL 308
Y L+KN WG W E G +RI R G S G+C + ++ YP+
Sbjct: 174 YILIKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPI 214
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 122/227 (53%), Gaps = 27/227 (11%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL--- 149
DS+DW E+G VT VK QGS CWAF+AV +E K++TG+LV+ S LVDCST
Sbjct: 4 DSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYG 63
Query: 150 -NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDW---WRSSASGKYGAIRGYQY 205
GC F+ AF+YI + + S+ YPY+ D C + +R++ KY +
Sbjct: 64 NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKA-MDQKCQYDSKYRAATCSKYTEL----- 117
Query: 206 VQPATEEGL--QDVVSRQPVSVAIDATW--FNFYHGGVFTGP-CGNTPNHGVTIVGYGTT 260
P E + + V ++ PVSV +DA F Y GV+ P C NHGV +VGYG
Sbjct: 118 --PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL 175
Query: 261 TEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
E YWLVKN WG N+ E G +R+ R G C IA+ +YP
Sbjct: 176 NGKE----YWLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 216
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 122/227 (53%), Gaps = 27/227 (11%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL--- 149
DS+DW E+G VT VK QGS CWAF+AV +E K++TG+LV+ S LVDCST
Sbjct: 3 DSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYG 62
Query: 150 -NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDW---WRSSASGKYGAIRGYQY 205
GC F+ AF+YI + + S+ YPY+ D C + +R++ KY +
Sbjct: 63 NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKA-MDQKCQYDSKYRAATCSKYTEL----- 116
Query: 206 VQPATEEGL--QDVVSRQPVSVAIDATW--FNFYHGGVFTGP-CGNTPNHGVTIVGYGTT 260
P E + + V ++ PVSV +DA F Y GV+ P C NHGV +VGYG
Sbjct: 117 --PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL 174
Query: 261 TEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
E YWLVKN WG N+ E G +R+ R G C IA+ +YP
Sbjct: 175 NGKE----YWLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 215
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 122/227 (53%), Gaps = 27/227 (11%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL--- 149
DS+DW E+G VT VK QGS CWAF+AV +E K++TG+LV+ S LVDCST
Sbjct: 4 DSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYG 63
Query: 150 -NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDW---WRSSASGKYGAIRGYQY 205
GC F+ AF+YI + + S+ YPY+ D C + +R++ KY +
Sbjct: 64 NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKA-MDQKCQYDSKYRAATCSKYTEL----- 117
Query: 206 VQPATEEGL--QDVVSRQPVSVAIDATW--FNFYHGGVFTGP-CGNTPNHGVTIVGYGTT 260
P E + + V ++ PVSV +DA F Y GV+ P C NHGV +VGYG
Sbjct: 118 --PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL 175
Query: 261 TEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
E YWLVKN WG N+ E G +R+ R G C IA+ +YP
Sbjct: 176 NGKE----YWLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 216
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 110/325 (33%), Positives = 154/325 (47%), Gaps = 41/325 (12%)
Query: 11 IAAKHEQWMVEFARTYKDQAEKEMRFKIFKKNHEF----------------LRLNKFADL 54
+A K E + +AR+Y + E+ R +IF+K E L +N F D+
Sbjct: 18 VAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDM 77
Query: 55 TREKFLASYTGYKPPPTDH----PHSNRSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQ 110
T E+ A G P H P R + LN+S + + S DW ++G V+PVK+Q
Sbjct: 78 TPEEMKAYTHGLIMPADLHKNGIPIKTREDL--GLNAS-VRYPASFDWRDQGMVSPVKNQ 134
Query: 111 GSY-CCWAFTAVATVEGLNKIRTGQ--LVTRSKHQLVDC-STLNGCAKNFLENAFEYIRQ 166
GS WAF++ +E KI G + S+ QLVDC GC+ ++ +AF Y+ Q
Sbjct: 135 GSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSGGWMNDAFTYVAQ 194
Query: 167 YQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVV-SRQPVSV 225
+ SE YPY+ D C + + + + + GY Y+ E L D+V ++ PV+V
Sbjct: 195 NGGIDSEGAYPYE-MADGNCHYDPNQVAAR---LSGYVYLSGPDENMLADMVATKGPVAV 250
Query: 226 AIDAT-WFNFYHGGVFTGPCGNTP--NHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDE 282
A DA F Y GGV+ P T H V IVGYG E Q YWLVKN WG W
Sbjct: 251 AFDADDPFGSYSGGVYYNPTCETNKFTHAVLIVGYGN----ENGQDYWLVKNSWGDGWGL 306
Query: 283 GGSMRIFRGVGGSGLCNIAANAAYP 307
G +I R C IA A+ P
Sbjct: 307 DGYFKIARNANNH--CGIAGVASVP 329
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 121/227 (53%), Gaps = 27/227 (11%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL--- 149
DS+DW E+G VT VK QGS WAF+AV +E K++TG+LV+ S LVDCST
Sbjct: 3 DSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYG 62
Query: 150 -NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDW---WRSSASGKYGAIRGYQY 205
GC F+ AF+YI + + S+ YPY+ D C + +R++ KY +
Sbjct: 63 NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKA-MDLKCQYDSKYRAATCSKYTEL----- 116
Query: 206 VQPATEEGL--QDVVSRQPVSVAIDATW--FNFYHGGVFTGP-CGNTPNHGVTIVGYGTT 260
P E + + V ++ PVSV +DA F Y GV+ P C NHGV +VGYG
Sbjct: 117 --PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL 174
Query: 261 TEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
E YWLVKN WG N+ E G +R+ R G C IA+ +YP
Sbjct: 175 NGKE----YWLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 215
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 121/227 (53%), Gaps = 27/227 (11%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL--- 149
DS+DW E+G VT VK QGS WAF+AV +E K++TG+LV+ S LVDCST
Sbjct: 4 DSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYG 63
Query: 150 -NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDW---WRSSASGKYGAIRGYQY 205
GC F+ AF+YI + + S+ YPY+ D C + +R++ KY +
Sbjct: 64 NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKA-MDQKCQYDSKYRAATCSKYTEL----- 117
Query: 206 VQPATEEGL--QDVVSRQPVSVAIDATW--FNFYHGGVFTGP-CGNTPNHGVTIVGYGTT 260
P E + + V ++ PVSV +DA F Y GV+ P C NHGV +VGYG
Sbjct: 118 --PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL 175
Query: 261 TEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
E YWLVKN WG N+ E G +R+ R G C IA+ +YP
Sbjct: 176 NGKE----YWLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 216
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 121/227 (53%), Gaps = 27/227 (11%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL--- 149
DS+DW E+G VT VK QGS WAF+AV +E K++TG+LV+ S LVDCST
Sbjct: 3 DSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYG 62
Query: 150 -NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDW---WRSSASGKYGAIRGYQY 205
GC F+ AF+YI + + S+ YPY+ D C + +R++ KY +
Sbjct: 63 NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKA-MDQKCQYDSKYRAATCSKYTEL----- 116
Query: 206 VQPATEEGL--QDVVSRQPVSVAIDATW--FNFYHGGVFTGP-CGNTPNHGVTIVGYGTT 260
P E + + V ++ PVSV +DA F Y GV+ P C NHGV +VGYG
Sbjct: 117 --PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL 174
Query: 261 TEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
E YWLVKN WG N+ E G +R+ R G C IA+ +YP
Sbjct: 175 NGKE----YWLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 215
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 121/227 (53%), Gaps = 27/227 (11%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL--- 149
DS+DW E+G VT VK QGS WAF+AV +E K++TG+LV+ S LVDCST
Sbjct: 5 DSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYG 64
Query: 150 -NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDW---WRSSASGKYGAIRGYQY 205
GC F+ AF+YI + + S+ YPY+ D C + +R++ KY +
Sbjct: 65 NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKA-MDQKCQYDSKYRAATCSKYTEL----- 118
Query: 206 VQPATEEGL--QDVVSRQPVSVAIDATW--FNFYHGGVFTGP-CGNTPNHGVTIVGYGTT 260
P E + + V ++ PVSV +DA F Y GV+ P C NHGV +VGYG
Sbjct: 119 --PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL 176
Query: 261 TEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
E YWLVKN WG N+ E G +R+ R G C IA+ +YP
Sbjct: 177 NGKE----YWLVKNSWGHNFGEEGYIRMARNKGNH--CGIASFPSYP 217
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 139/273 (50%), Gaps = 31/273 (11%)
Query: 48 LNKFADLTREKFLASYTGYKPPPTDHPHSNRSNWFKNLNSSKMSFYD---SIDWNERGAV 104
+N F D+T E+F G++ NR + + FY+ S+DW E+G V
Sbjct: 2 MNAFGDMTSEEFRQVMNGFQ---------NRKPRKGKVFQEPL-FYEAPRSVDWREKGYV 51
Query: 105 TPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNG---CAKNFLENA 160
TPVK+QG CWAF+A +EG +TG+L++ S+ LVDCS G C ++ A
Sbjct: 52 TPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYA 111
Query: 161 FEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQ-PATEEGLQDVVS 219
F+Y++ L SE YPY+ ++ C + + KY +V P E+ L V+
Sbjct: 112 FQYVQDNGGLDSEESYPYEATEES-CKY-----NPKYSVANDAGFVDIPKQEKALMKAVA 165
Query: 220 R-QPVSVAIDA--TWFNFYHGGVFTGP-CGNTP-NHGVTIVGYGTTTEAEGQQPYWLVKN 274
P+SVAIDA F FY G++ P C + +HGV +VGYG + YWLVKN
Sbjct: 166 TVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKN 225
Query: 275 RWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
WG W GG +++ + C IA+ A+YP
Sbjct: 226 SWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 256
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 122/225 (54%), Gaps = 31/225 (13%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-GC 152
SIDW ++GAVTPV++QG CW F++VA VEG+NKI TGQL++ S+ +L+DC + GC
Sbjct: 4 SIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRSYGC 63
Query: 153 AKNFLENAFEYI-------RQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQY 205
F A +Y+ RQY YPY+G Q S A G G
Sbjct: 64 RGGFPLYALQYVANSGIHLRQY--------YPYEGVQR---QCRASQAKGPKVKTDGVGR 112
Query: 206 VQPATEEGLQDVVSRQPVSVAIDATW--FNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEA 263
V E+ L ++ QPVS+ ++A F Y GG+F GPCG + +H V VGYG
Sbjct: 113 VPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGYGND--- 169
Query: 264 EGQQPYWLVKNRWGTNWDEGGSMRIFRGVGG-SGLCNIAANAAYP 307
Y L+KN WGT W EGG +RI RG G G C + +++ +P
Sbjct: 170 -----YILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFP 209
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 122/221 (55%), Gaps = 17/221 (7%)
Query: 94 DSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-G 151
DSID+ ++G VTPVK+QG CWAF++V +EG K TG L+ + LVDC + N G
Sbjct: 3 DSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSENDG 62
Query: 152 CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATE 211
C ++ NAF+Y+++ + + SE YPY G QD C + + +GK RGY+ + E
Sbjct: 63 CGGGYMTNAFQYVQRNRGIDSEDAYPYVG-QDESCMY---NPTGKAAKCRGYREIPEGNE 118
Query: 212 EGLQDVVSR-QPVSVAIDA--TWFNFYHGGVF--TGPCGNTPNHGVTIVGYGTTTEAEGQ 266
L+ V+ PVSVAIDA T F FY GV+ + NH V VGYG +
Sbjct: 119 AALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGI----QAG 174
Query: 267 QPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
+W++KN WG +W G + + R + C IA A++P
Sbjct: 175 NKHWIIKNSWGESWGNAGYILMARNKNNA--CGIANLASFP 213
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 130 bits (328), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 124/224 (55%), Gaps = 21/224 (9%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNGCA 153
SIDW ++GAVT VKDQG+ CWAF A +EG++ I TG+L++ S+ Q+VDC T
Sbjct: 4 SIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXXXX 63
Query: 154 KNF-LENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEE 212
++AF ++ +AS+ YPY G D CD + A+ I GY V P +
Sbjct: 64 XGGDADDAFRWVITNGGIASDANYPYTG-VDGTCDLNKPIAA----RIDGYTNV-PNSSS 117
Query: 213 GLQDVVSRQPVSVAI--DATWFNFYHG-GVFTG-PCGNTP---NHGVTIVGYGTT-TEAE 264
L D V++QPVSV I +T F Y G G+F G C + P +H V IVGYG+ T A+
Sbjct: 118 ALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNAD 177
Query: 265 GQQPYWLVKNRWGTNWDEGGSMRIFRGVG-GSGLCNIAANAAYP 307
YW+VKN WGT W G + I R G+C I A +YP
Sbjct: 178 ----YWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYP 217
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 130 bits (327), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 146/280 (52%), Gaps = 34/280 (12%)
Query: 43 HEF-LRLNKFADLTREKFLASYTGYKPPPTDHPHSNRSNWFKNLNSSKMSFYD---SIDW 98
H F + +N F D+T E+F G + NR + + FY+ S+DW
Sbjct: 50 HSFTMAMNAFGDMTSEEFRQVMNGLQ---------NRKPRKGKVFQEPL-FYEAPRSVDW 99
Query: 99 NERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNG---CAK 154
E+G VTPVK+QG WAF+A +EG +TG+L++ S+ LVDCS G C
Sbjct: 100 REKGYVTPVKNQGQCGSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNG 159
Query: 155 NFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQ-PATEEG 213
++ AF+Y++ L SE YPY+ ++ C + + KY +V P E+
Sbjct: 160 GLMDYAFQYVQDNGGLDSEESYPYEATEES-CKY-----NPKYSVANDAGFVDIPKQEKA 213
Query: 214 LQDVVSR-QPVSVAIDA--TWFNFYHGGVFTGP-CGNTP-NHGVTIVGYG-TTTEAEGQQ 267
L V+ P+SVAIDA F FY G++ P C + +HGV +VGYG +TE++G +
Sbjct: 214 LMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNK 273
Query: 268 PYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
YWLVKN WG W GG +++ + C IA+ A+YP
Sbjct: 274 -YWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 310
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/279 (34%), Positives = 141/279 (50%), Gaps = 32/279 (11%)
Query: 43 HEF-LRLNKFADLTREKFLASYTGYKPPPTDHPHSNRSNWFKNLNSSKMSFYD---SIDW 98
H F + +N F D+T E+F G++ NR + + FY+ S+DW
Sbjct: 54 HSFTMAMNAFGDMTSEEFRQVMNGFQ---------NRKPRKGKVFQEPL-FYEAPRSVDW 103
Query: 99 NERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNG---CAK 154
E+G VTPVK+QG WAF+A +EG +TG+L++ S+ LVDCS G C
Sbjct: 104 REKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNG 163
Query: 155 NFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQ-PATEEG 213
++ AF+Y++ L SE YPY+ ++ C + + KY +V P E+
Sbjct: 164 GLMDYAFQYVQDNGGLDSEESYPYEATEES-CKY-----NPKYSVANDAGFVDIPKQEKA 217
Query: 214 LQDVVSR-QPVSVAIDA--TWFNFYHGGVFTGP-CGNTP-NHGVTIVGYGTTTEAEGQQP 268
L V+ P+SVAIDA F FY G++ P C + +HGV +VGYG +
Sbjct: 218 LMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNK 277
Query: 269 YWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
YWLVKN WG W GG +++ + C IA+ A+YP
Sbjct: 278 YWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 314
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 120/224 (53%), Gaps = 19/224 (8%)
Query: 95 SIDWNERGAVTPVKDQ---GSYCCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNG 151
S+DW ++G VTPVK+Q GS CWAF+A +EG +TG+LV+ S+ LVDCS G
Sbjct: 4 SVDWRKKGYVTPVKNQKQCGS--CWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQG 61
Query: 152 ---CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQP 208
C F+ AF+Y+++ L SE YPY D C + ++ + G+ V P
Sbjct: 62 NQGCNGGFMARAFQYVKENGGLDSEESYPYVAV-DEICKYRPENSVAQ---DTGFTVVAP 117
Query: 209 ATEEGLQDVVSR-QPVSVAIDA--TWFNFYHGGVFTGPCGNTPN--HGVTIVGYGTTTEA 263
E+ L V+ P+SVA+DA + F FY G++ P ++ N HGV +VGYG
Sbjct: 118 GKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGAN 177
Query: 264 EGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
YWLVKN WG W G ++I + + C IA A+YP
Sbjct: 178 SDNSKYWLVKNSWGPEWGSNGYVKIAK--DKNNHCGIATAASYP 219
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 120/223 (53%), Gaps = 18/223 (8%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL---N 150
S+DW E+G VTPVK+QG CWAF+A +EG +TG+L++ S+ LVDCS
Sbjct: 5 SVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNE 64
Query: 151 GCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQ-PA 209
GC ++ AF+Y++ L SE YPY+ ++ C + + KY +V P
Sbjct: 65 GCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES-CKY-----NPKYSVANDTGFVDIPK 118
Query: 210 TEEGLQDVVSR-QPVSVAIDA--TWFNFYHGGVFTGP-CGNTP-NHGVTIVGYGTTTEAE 264
E+ L V+ P+SVAIDA F FY G++ P C + +HGV +VGYG +
Sbjct: 119 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 178
Query: 265 GQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
YWLVKN WG W GG +++ + C IA+ A+YP
Sbjct: 179 DNNKYWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 219
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 120/223 (53%), Gaps = 18/223 (8%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL---N 150
S+DW E+G VTPVK+QG CWAF+A +EG +TG+L++ S+ LVDCS
Sbjct: 4 SVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNE 63
Query: 151 GCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQ-PA 209
GC ++ AF+Y++ L SE YPY+ ++ C + + KY +V P
Sbjct: 64 GCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES-CKY-----NPKYSVANDTGFVDIPK 117
Query: 210 TEEGLQDVVSR-QPVSVAIDA--TWFNFYHGGVFTGP-CGNTP-NHGVTIVGYGTTTEAE 264
E+ L V+ P+SVAIDA F FY G++ P C + +HGV +VGYG +
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 265 GQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
YWLVKN WG W GG +++ + C IA+ A+YP
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 218
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 120/223 (53%), Gaps = 18/223 (8%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL---N 150
S+DW E+G VTPVK+QG CWAF+A +EG +TG+L++ S+ LVDCS
Sbjct: 4 SVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNE 63
Query: 151 GCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQ-PA 209
GC ++ AF+Y++ L SE YPY+ ++ C + + KY +V P
Sbjct: 64 GCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES-CKY-----NPKYSVANDAGFVDIPK 117
Query: 210 TEEGLQDVVSR-QPVSVAIDA--TWFNFYHGGVFTGP-CGNTP-NHGVTIVGYGTTTEAE 264
E+ L V+ P+SVAIDA F FY G++ P C + +HGV +VGYG +
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 265 GQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
YWLVKN WG W GG +++ + C IA+ A+YP
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 218
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/316 (31%), Positives = 153/316 (48%), Gaps = 41/316 (12%)
Query: 17 QWMVEFARTYKDQAEKEMRFKIFKKN----------HEF------LRLNKFADLTREKFL 60
QW + + Y + A+ + R I++KN H+ L LN+F D+T E+F
Sbjct: 7 QWKRMYNKEY-NGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFK 65
Query: 61 ASYTGYKPPPTDHPHSNRSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQGSYCC-WAFT 119
A Y +D ++ + D IDW E G VT VKDQG+ WAF+
Sbjct: 66 AKYLTEMSRASDILSHGVP-----YEANNRAVPDKIDWRESGYVTEVKDQGNCGSGWAFS 120
Query: 120 AVATVEGLNKIRTGQLVTRSKHQLVDCSTL---NGCAKNFLENAFEYIRQYQRLASECVY 176
T+EG ++ S+ QLVDCS NGC +ENA++Y++Q+ L +E Y
Sbjct: 121 TTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQFG-LETESSY 179
Query: 177 PYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVSRQ-PVSVAIDA-TWFNF 234
PY + C + + K + G+ V +E L+++V + P +VA+D + F
Sbjct: 180 PYTAVEGQ-CRYNKQLGVAK---VTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMM 235
Query: 235 YHGGVFTGPCGN--TPNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGV 292
Y G++ + NH V VGYGT +G YW+VKN WG +W E G +R+ R
Sbjct: 236 YRSGIYQSQTCSPLRVNHAVLAVGYGT----QGGTDYWIVKNSWGLSWGERGYIRMVRNR 291
Query: 293 GGSGLCNIAANAAYPL 308
G +C IA+ A+ P+
Sbjct: 292 G--NMCGIASLASLPM 305
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 119/224 (53%), Gaps = 19/224 (8%)
Query: 95 SIDWNERGAVTPVKDQ---GSYCCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNG 151
S+DW ++G VTPVK+Q GS WAF+A +EG +TG+LV+ S+ LVDCS G
Sbjct: 4 SVDWRKKGYVTPVKNQKQCGSX--WAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQG 61
Query: 152 ---CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQP 208
C F+ AF+Y+++ L SE YPY D C + ++ + G+ V P
Sbjct: 62 NQGCNGGFMARAFQYVKENGGLDSEESYPYVAV-DEICKYRPENSVAQ---DTGFTVVAP 117
Query: 209 ATEEGLQDVVSR-QPVSVAIDA--TWFNFYHGGVFTGPCGNTPN--HGVTIVGYGTTTEA 263
E+ L V+ P+SVA+DA + F FY G++ P ++ N HGV +VGYG
Sbjct: 118 GKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGAN 177
Query: 264 EGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
YWLVKN WG W G ++I + + C IA A+YP
Sbjct: 178 SDNSKYWLVKNSWGPEWGSNGYVKIAK--DKNNHCGIATAASYP 219
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 124 bits (310), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 119/223 (53%), Gaps = 18/223 (8%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL---N 150
S+DW E+G VTPVK+QG WAF+A +EG +TG+L++ S+ LVDCS
Sbjct: 5 SVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNE 64
Query: 151 GCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQ-PA 209
GC ++ AF+Y++ L SE YPY+ ++ C + + KY +V P
Sbjct: 65 GCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES-CKY-----NPKYSVANDTGFVDIPK 118
Query: 210 TEEGLQDVVSR-QPVSVAIDA--TWFNFYHGGVFTGP-CGNTP-NHGVTIVGYGTTTEAE 264
E+ L V+ P+SVAIDA F FY G++ P C + +HGV +VGYG +
Sbjct: 119 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 178
Query: 265 GQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
YWLVKN WG W GG +++ + C IA+ A+YP
Sbjct: 179 DNNKYWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 219
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 124 bits (310), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 119/223 (53%), Gaps = 18/223 (8%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL---N 150
S+DW E+G VTPVK+QG WAF+A +EG +TG+L++ S+ LVDCS
Sbjct: 4 SVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNE 63
Query: 151 GCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQ-PA 209
GC ++ AF+Y++ L SE YPY+ ++ C + + KY +V P
Sbjct: 64 GCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES-CKY-----NPKYSVANDTGFVDIPK 117
Query: 210 TEEGLQDVVSR-QPVSVAIDA--TWFNFYHGGVFTGP-CGNTP-NHGVTIVGYGTTTEAE 264
E+ L V+ P+SVAIDA F FY G++ P C + +HGV +VGYG +
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 265 GQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
YWLVKN WG W GG +++ + C IA+ A+YP
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 218
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 119/223 (53%), Gaps = 18/223 (8%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL---N 150
S+DW E+G VTPVK+QG WAF+A +EG +TG+L++ S+ LVDCS
Sbjct: 4 SVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNE 63
Query: 151 GCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQ-PA 209
GC ++ AF+Y++ L SE YPY+ ++ C + + KY +V P
Sbjct: 64 GCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES-CKY-----NPKYSVANDAGFVDIPK 117
Query: 210 TEEGLQDVVSR-QPVSVAIDA--TWFNFYHGGVFTGP-CGNTP-NHGVTIVGYGTTTEAE 264
E+ L V+ P+SVAIDA F FY G++ P C + +HGV +VGYG +
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 265 GQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
YWLVKN WG W GG +++ + C IA+ A+YP
Sbjct: 178 DDNKYWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 218
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 119/223 (53%), Gaps = 18/223 (8%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL---N 150
S+DW E+G VTPVK+QG WAF+A +EG +TG+L++ S+ LVDCS
Sbjct: 4 SVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNE 63
Query: 151 GCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQ-PA 209
GC ++ AF+Y++ L SE YPY+ ++ C + + KY +V P
Sbjct: 64 GCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES-CKY-----NPKYSVANDTGFVDIPK 117
Query: 210 TEEGLQDVVSR-QPVSVAIDA--TWFNFYHGGVFTGP-CGNTP-NHGVTIVGYGTTTEAE 264
E+ L V+ P+SVAIDA F FY G++ P C + +HGV +VGYG +
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 265 GQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
YWLVKN WG W GG +++ + C IA+ A+YP
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 218
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 121/225 (53%), Gaps = 15/225 (6%)
Query: 94 DSIDWNERGAVTPVKDQGSYCC-WAFTAVATVEGLNKIRTGQLVTRSKHQLVDC-STLNG 151
+S DW+++G +T VK QG WAF+A +E + I TG LV+ S+ +L+DC G
Sbjct: 4 ESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDESEG 63
Query: 152 CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYC---DWWRSSASGKYGA-IRGYQYVQ 207
C + +FE++ ++ +ASE YPY+ R D C + YG I + +
Sbjct: 64 CYNGWHYQSFEWVVKHGGIASEADYPYKAR-DGKCKANEIQDKVTIDNYGVQILSNESTE 122
Query: 208 PATEEGLQDVVSRQPVSVAIDATWFNFYHGGVFTGPCGNTP---NHGVTIVGYGTTTEAE 264
E LQ V QP+SV+IDA F+FY GG++ G ++P NH V IVGYG+ E
Sbjct: 123 SEAESSLQSFVLEQPISVSIDAKDFHFYSGGIYDGGNCSSPYGINHFVLIVGYGS----E 178
Query: 265 GQQPYWLVKNRWGTNWDEGGSMRIFRGVGG-SGLCNIAANAAYPL 308
YW+ KN WG +W G +RI R G G+C + A+YP+
Sbjct: 179 DGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPI 223
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 115/223 (51%), Gaps = 17/223 (7%)
Query: 97 DWNERGAVTPVKDQGSYC--CWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-GCA 153
DW G VTPVKDQ + C CWAF++V +VE IR L S+ +LVDCS N GC
Sbjct: 25 DWRLHGGVTPVKDQ-ALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGCY 83
Query: 154 KNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEG 213
++ NAF+ + L S+ YPY C+ R + +Y I+ YV ++
Sbjct: 84 GGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNE--RY-TIK--SYVSIPDDKF 138
Query: 214 LQDVVSRQPVSVAIDATW-FNFYHGGVFTGPCGNTPNHGVTIVGYGTT---TEAEGQQP- 268
+ + P+S++I A+ F FY GG + G CG PNH V +VGYG E G+
Sbjct: 139 KEALRYLGPISISIAASDDFAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRMEK 198
Query: 269 --YWLVKNRWGTNWDEGGSMRIFRGVGG-SGLCNIAANAAYPL 308
Y+++KN WG++W EGG + + G C+I A PL
Sbjct: 199 FYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPL 241
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 116/225 (51%), Gaps = 22/225 (9%)
Query: 95 SIDWNERGA-VTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCS---TL 149
S+DW ++G V+PVK+QGS CW F+ +E I TG++++ ++ QLVDC+
Sbjct: 4 SMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNN 63
Query: 150 NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPA 209
+GC AFEYIR + + E YPY+G QD +C + A ++ +
Sbjct: 64 HGCQGGLPSQAFEYIRYNKGIMGEDTYPYKG-QDDHCKFQPDKA---IAFVKDVANITMN 119
Query: 210 TEEGLQDVVSR-QPVSVAIDATW-FNFYHGGVFTG-PCGNTP---NHGVTIVGYGTTTEA 263
EE + + V+ PVS A + T F Y G+++ C TP NH V VGYG
Sbjct: 120 DEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGE---- 175
Query: 264 EGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL 308
E PYW+VKN WG W G I R G +C +AA A+YP+
Sbjct: 176 ENGIPYWIVKNSWGPQWGMNGYFLIER---GKNMCGLAACASYPI 217
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 117 bits (292), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 108/206 (52%), Gaps = 19/206 (9%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-GC 152
++DW E+GAVTPVKDQG CWAF+ + +EG ++ LV+ S+ LV C T++ GC
Sbjct: 4 AVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDFGC 63
Query: 153 AKNFLENAFEYIRQYQ--RLASECVYPY---QGRQDYYCDWWRSSASG-KYGAIRGYQYV 206
++NAF +I + +E YPY G Q + +G + GA
Sbjct: 64 GGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQP------QCQMNGHEIGAAITDHVD 117
Query: 207 QPATEEGLQDVVSRQ-PVSVAIDATWFNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEG 265
P E+ + ++ P+++A+DAT F Y+GG+ T +HGV +VGY +
Sbjct: 118 LPQDEDAIAAYLAENGPLAIAVDATSFMDYNGGILTSCTSEQLDHGVLLVGYNDASNP-- 175
Query: 266 QQPYWLVKNRWGTNWDEGGSMRIFRG 291
PYW++KN W W E G +RI +G
Sbjct: 176 --PYWIIKNSWSNMWGEDGYIRIEKG 199
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 119/223 (53%), Gaps = 21/223 (9%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNG-- 151
S+DW E+G VTPVK+QG +AF+A +EG +TG+L++ S+ LVDCS G
Sbjct: 4 SVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNE 63
Query: 152 -CAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQ-PA 209
C ++ AF+Y++ L SE YPY+ ++ C + + KY +V P
Sbjct: 64 GCNGGLMDYAFQYVQDNGGLDSEESYPYEATEES-CKY-----NPKYSVANDVGFVDIPK 117
Query: 210 TEEGLQDVVSR-QPVSVAIDA--TWFNFYHGGVF--TGPCGNTPNHGVTIVGYGTTTEAE 264
E+ L V+ P+SVAIDA F FY G++ + ++ NH + +VGYG +
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISN-- 175
Query: 265 GQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
Q YWLVKN WG W GG +++ + C IA+ A+YP
Sbjct: 176 -NQKYWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 215
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 110/223 (49%), Gaps = 17/223 (7%)
Query: 97 DWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-GCAK 154
DW VTPVKDQ + CWAF+++ +VE IR +L+T S+ +LVDCS N GC
Sbjct: 23 DWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNG 82
Query: 155 NFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGL 214
+ NAFE + + + + YPY C+ R + KYG I+ Y V +
Sbjct: 83 GLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTE--KYG-IKNYLSVPDNKLKEA 139
Query: 215 QDVVSRQPVSVAIDATWFNFYHGGVFTGPCGNTPNHGVTIVGYGT------TTEAEGQQP 268
+ +SVA+ F FY G+F G CG+ NH V +VG+G T+ +
Sbjct: 140 LRFLGPISISVAVSDD-FAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHY 198
Query: 269 YWLVKNRWGTNWDEGGSMRIFRGVGGSGL---CNIAANAAYPL 308
Y+++KN WG W E G + I SGL C + +A PL
Sbjct: 199 YYIIKNSWGQQWGERGFINI--ETDESGLMRKCGLGTDAFIPL 239
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 109/223 (48%), Gaps = 17/223 (7%)
Query: 97 DWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-GCAK 154
DW VTPVKDQ + WAF+++ +VE IR +L+T S+ +LVDCS N GC
Sbjct: 22 DWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNG 81
Query: 155 NFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGL 214
+ NAFE + + + + YPY C+ R + KYG I+ Y V +
Sbjct: 82 GLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTE--KYG-IKNYLSVPDNKLKEA 138
Query: 215 QDVVSRQPVSVAIDATWFNFYHGGVFTGPCGNTPNHGVTIVGYGT------TTEAEGQQP 268
+ +SVA+ F FY G+F G CG+ NH V +VG+G T+ +
Sbjct: 139 LRFLGPISISVAVSDD-FAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHY 197
Query: 269 YWLVKNRWGTNWDEGGSMRIFRGVGGSGL---CNIAANAAYPL 308
Y+++KN WG W E G + I SGL C + +A PL
Sbjct: 198 YYIIKNSWGQQWGERGFINI--ETDESGLMRKCGLGTDAFIPL 238
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 101/204 (49%), Gaps = 15/204 (7%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCS-TLNGC 152
++DW RGAVT VKDQG CWAF+A+ VE + L S+ LV C T +GC
Sbjct: 4 AVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGC 63
Query: 153 AKNFLENAFEYIRQYQRLA--SECVYPYQGRQDYY--CDWWRSSASGKYGAIRGYQYVQP 208
+ + NAFE+I Q A +E YPY + C +++ GA P
Sbjct: 64 SGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPC----TTSGHTVGATITGHVELP 119
Query: 209 ATEEGLQD-VVSRQPVSVAIDATWFNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQ 267
E + + PV+VA+DA+ + Y GGV T +HGV +VGY +
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEALDHGVLLVGYNDSAAV---- 175
Query: 268 PYWLVKNRWGTNWDEGGSMRIFRG 291
PYW++KN W T W E G +RI +G
Sbjct: 176 PYWIIKNSWTTQWGEEGYIRIAKG 199
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 101/204 (49%), Gaps = 15/204 (7%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCS-TLNGC 152
++DW RGAVT VKDQG CWAF+A+ VE + L S+ LV C T +GC
Sbjct: 4 AVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGC 63
Query: 153 AKNFLENAFEYIRQYQRLA--SECVYPYQGRQDYY--CDWWRSSASGKYGAIRGYQYVQP 208
+ + NAFE+I Q A +E YPY + C +++ GA P
Sbjct: 64 SGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPC----TTSGHTVGATITGHVELP 119
Query: 209 ATEEGLQD-VVSRQPVSVAIDATWFNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQ 267
E + + PV+VA+DA+ + Y GGV T +HGV +VGY +
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAV---- 175
Query: 268 PYWLVKNRWGTNWDEGGSMRIFRG 291
PYW++KN W T W E G +RI +G
Sbjct: 176 PYWIIKNSWTTQWGEEGYIRIAKG 199
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 100/204 (49%), Gaps = 15/204 (7%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCS-TLNGC 152
++DW RGAVT VKDQG CWAF+A+ VE + L ++ LV C T +GC
Sbjct: 4 AVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDSGC 63
Query: 153 AKNFLENAFEYIRQYQRLA--SECVYPYQGRQDYY--CDWWRSSASGKYGAIRGYQYVQP 208
+ + NAFE+I Q A +E YPY + C +++ GA P
Sbjct: 64 SGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPC----TTSGHTVGATITGHVELP 119
Query: 209 ATEEGLQD-VVSRQPVSVAIDATWFNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQ 267
E + + PV+VA+DA+ + Y GGV T +HGV +VGY
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAV---- 175
Query: 268 PYWLVKNRWGTNWDEGGSMRIFRG 291
PYW++KN W T W E G +RI +G
Sbjct: 176 PYWIIKNSWTTQWGEEGYIRIAKG 199
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 100/204 (49%), Gaps = 15/204 (7%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCS-TLNGC 152
++DW RGAVT VKDQG CWAF+A+ VE + L ++ LV C T +GC
Sbjct: 4 AVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDSGC 63
Query: 153 AKNFLENAFEYIRQYQRLA--SECVYPYQGRQDYY--CDWWRSSASGKYGAIRGYQYVQP 208
+ + NAFE+I Q A +E YPY + C +++ GA P
Sbjct: 64 SGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPC----TTSGHTVGATITGHVELP 119
Query: 209 ATEEGLQD-VVSRQPVSVAIDATWFNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQ 267
E + + PV+VA+DA+ + Y GGV T +HGV +VGY
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAV---- 175
Query: 268 PYWLVKNRWGTNWDEGGSMRIFRG 291
PYW++KN W T W E G +RI +G
Sbjct: 176 PYWIIKNSWTTQWGEEGYIRIAKG 199
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 107/220 (48%), Gaps = 26/220 (11%)
Query: 97 DWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-GCAK 154
DW +GAVT VKDQG CWAF+ VEG + G L++ S+ +L+DC ++ C
Sbjct: 6 DWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACMG 65
Query: 155 NFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGL 214
NA+ I+ L +E Y YQG S ++ A + Y+Q + E
Sbjct: 66 GLPSNAYSAIKNLGGLETEDDYSYQGHMQ----------SCQFSAEKAKVYIQDSVELSQ 115
Query: 215 QD------VVSRQPVSVAIDATWFNFYHGGV---FTGPCGN-TPNHGVTIVGYGTTTEAE 264
+ + R P+SVAI+A FY G+ C +H V +VGYG ++
Sbjct: 116 NEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDV- 174
Query: 265 GQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANA 304
P+W +KN WGT+W E G + RG G G+ +A++A
Sbjct: 175 ---PFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSA 211
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 96/174 (55%), Gaps = 16/174 (9%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL---N 150
S+DW E+G VTPVK+QG CWAF+A +EG +TG+L++ S+ LVDCS
Sbjct: 4 SVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNE 63
Query: 151 GCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQ-PA 209
GC ++ AF+Y++ L SE YPY+ ++ C + + KY +V P
Sbjct: 64 GCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE-SCKY-----NPKYSVANDTGFVDIPK 117
Query: 210 TEEGLQDVVSR-QPVSVAIDA--TWFNFYHGGVFTGP-CGNTP-NHGVTIVGYG 258
E+ L V+ P+SVAIDA F FY G++ P C + +HGV +VGYG
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 16/174 (9%)
Query: 95 SIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL---N 150
S+DW E+G VTPVK+QG WAF+A +EG +TG+L++ S+ LVDCS
Sbjct: 4 SVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNE 63
Query: 151 GCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQ-PA 209
GC ++ AF+Y++ L SE YPY+ ++ C + + KY +V P
Sbjct: 64 GCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE-SCKY-----NPKYSVANDTGFVDIPK 117
Query: 210 TEEGLQDVVSR-QPVSVAIDA--TWFNFYHGGVFTGP-CGNTP-NHGVTIVGYG 258
E+ L V+ P+SVAIDA F FY G++ P C + +HGV +VGYG
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 92/197 (46%), Gaps = 18/197 (9%)
Query: 96 IDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNGCAK 154
+D VTP++ QG CWAF+ VA E + S+ +LVDC++ +GC
Sbjct: 15 LDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCASQHGCHG 74
Query: 155 NFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGL 214
+ + EYI+Q + E YPY R+ R S YG I Y + P + +
Sbjct: 75 DTIPRGIEYIQQ-NGVVEERSYPYVAREQR----CRRPNSQHYG-ISNYCQIYPPDVKQI 128
Query: 215 QDVVSRQPVSVAI-----DATWFNFYHG-GVFTGPCGNTPN-HGVTIVGYGTTTEAEGQQ 267
++ +++ ++A+ D F Y G + G PN H V IVGYG+T +
Sbjct: 129 REALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNYHAVNIVGYGSTQGDD--- 185
Query: 268 PYWLVKNRWGTNWDEGG 284
YW+V+N W T W + G
Sbjct: 186 -YWIVRNSWDTTWGDSG 201
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 133/286 (46%), Gaps = 31/286 (10%)
Query: 16 EQWMVEFARTYKDQAEKEMRFKIFKKNHEFLR-----LNKFADLT----REKFLASYTGY 66
E++ F ++Y ++E K F ++ ++++ +N +DL+ + +FL S +
Sbjct: 9 EEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGGAINHLSDLSLDEFKNRFLMSAEAF 68
Query: 67 KPPPTDHPHSNRSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQGSY-CCWAFTAVATVE 125
+ T + +N ++N + + ID + VTP++ QG WAF+ VA E
Sbjct: 69 EHLKTQFDLNAETNAC-SINGNAPA---EIDLRQMRTVTPIRMQGGCGSAWAFSGVAATE 124
Query: 126 GLNKIRTGQLVTRSKHQLVDCSTLNGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYY 185
Q + ++ +LVDC++ +GC + + EYI Q+ + E Y Y R+
Sbjct: 125 SAYLAYRDQSLDLAEQELVDCASQHGCHGDTIPRGIEYI-QHNGVVQESYYRYVARE--- 180
Query: 186 CDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVSRQPVSVAI-----DATWFNFYHG-GV 239
R + ++G I Y + P +++ +++ ++A+ D F Y G +
Sbjct: 181 -QSCRRPNAQRFG-ISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTI 238
Query: 240 FTGPCGNTPN-HGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGG 284
G PN H V IVGY + A+G YW+V+N W TNW + G
Sbjct: 239 IQRDNGYQPNYHAVNIVGY---SNAQGVD-YWIVRNSWDTNWGDNG 280
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 18/197 (9%)
Query: 96 IDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNGCAK 154
ID + VTP++ QG CWAF+ VA E Q + ++ +LVDC++ +GC
Sbjct: 14 IDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQHGCHG 73
Query: 155 NFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGL 214
+ + EYI Q+ + E Y Y R+ R + ++G I Y + P +
Sbjct: 74 DTIPRGIEYI-QHNGVVQESYYRYVAREQS----CRRPNAQRFG-ISNYCQIYPPNVNKI 127
Query: 215 QDVVSRQPVSVAI-----DATWFNFYHG-GVFTGPCGNTPN-HGVTIVGYGTTTEAEGQQ 267
++ +++ ++A+ D F Y G + G PN H V IVGY + A+G
Sbjct: 128 REALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGY---SNAQGVD 184
Query: 268 PYWLVKNRWGTNWDEGG 284
YW+V+N W TNW + G
Sbjct: 185 -YWIVRNSWDTNWGDNG 200
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 18/197 (9%)
Query: 96 IDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNGCAK 154
ID + VTP++ QG CWAF+ VA E Q + ++ +LVDC++ +GC
Sbjct: 14 IDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQHGCHG 73
Query: 155 NFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGL 214
+ + EYI Q+ + E Y Y R+ R + ++G I Y + P +
Sbjct: 74 DTIPRGIEYI-QHNGVVQESYYRYVAREQS----CRRPNAQRFG-ISNYCQIYPPNANKI 127
Query: 215 QDVVSRQPVSVAI-----DATWFNFYHG-GVFTGPCGNTPN-HGVTIVGYGTTTEAEGQQ 267
++ +++ ++A+ D F Y G + G PN H V IVGY + A+G
Sbjct: 128 REALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGY---SNAQGVD 184
Query: 268 PYWLVKNRWGTNWDEGG 284
YW+V+N W TNW + G
Sbjct: 185 -YWIVRNSWDTNWGDNG 200
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 18/197 (9%)
Query: 96 IDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNGCAK 154
ID + VTP++ QG WAF+ VA E Q + ++ +LVDC++ +GC
Sbjct: 14 IDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQHGCHG 73
Query: 155 NFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGL 214
+ + EYI Q+ + E Y Y R+ R + ++G I Y + P +
Sbjct: 74 DTIPRGIEYI-QHNGVVQESYYRYVAREQS----CRRPNAQRFG-ISNYCQIYPPNANKI 127
Query: 215 QDVVSRQPVSVAI-----DATWFNFYHG-GVFTGPCGNTPN-HGVTIVGYGTTTEAEGQQ 267
++ +++ ++A+ D F Y G + G PN H V IVGY + A+G
Sbjct: 128 REALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGY---SNAQGVD 184
Query: 268 PYWLVKNRWGTNWDEGG 284
YW+V+N W TNW + G
Sbjct: 185 -YWIVRNSWDTNWGDNG 200
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 101/223 (45%), Gaps = 26/223 (11%)
Query: 104 VTPVKDQGSY-CCWAFTAVATVEGLNKIRT--GQLVTRSKHQLVDCSTL-NGCAKNFLEN 159
V+PV++Q S C++F ++ +E +I T Q S ++V CS GC F
Sbjct: 222 VSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYL 281
Query: 160 AFEYIRQYQRLASECVYPYQGRQDYYC----DWWRSSASGKYGAIRGYQYVQPATEEGLQ 215
Q L E +PY G D C D +R +S +Y + G+ E L
Sbjct: 282 IAGKYAQDFGLVEEACFPYTG-TDSPCKMKEDCFRYYSS-EYHYVGGFY---GGCNEALM 336
Query: 216 --DVVSRQPVSVAIDA-TWFNFYHGGVFTGPCGNTP-------NHGVTIVGYGTTTEAEG 265
++V P++VA + F Y G++ P NH V +VGYGT + A G
Sbjct: 337 KLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDS-ASG 395
Query: 266 QQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL 308
YW+VKN WGT W E G RI RG + +IA AA P+
Sbjct: 396 MD-YWIVKNSWGTGWGENGYFRIRRGTDECAIESIAV-AATPI 436
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 103/237 (43%), Gaps = 23/237 (9%)
Query: 90 MSFYDSIDW-NERGA--VTPVKDQGSY-CCWAFTAVATVEGLNKIRT--GQLVTRSKHQL 143
+S +S DW N RG V+PV++Q S C++F ++ +E +I T Q S ++
Sbjct: 204 LSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEV 263
Query: 144 VDCSTL-NGCAKNF-LENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIR 201
V CS GC F A +Y + + + C +PY D C +
Sbjct: 264 VSCSPYAQGCDGGFPYLIAGKYAQDFGVVEENC-FPYTA-TDAPCKPKENCLRYYSSEYY 321
Query: 202 GYQYVQPATEEGLQ--DVVSRQPVSVAIDA-TWFNFYHGGVFTGPCGNTP-------NHG 251
E L ++V P++VA + F YH G++ + P NH
Sbjct: 322 YVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHA 381
Query: 252 VTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL 308
V +VGYG + YW+VKN WG+ W E G RI RG + +IA AA P+
Sbjct: 382 VLLVGYGK--DPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIAM-AAIPI 435
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 87/238 (36%), Gaps = 42/238 (17%)
Query: 91 SFYDSIDWNERGAVTPVKDQGSYC--CWAFTAVATVEGLNKIRTG--QLVTRSKHQLVDC 146
SF W ++ ++DQ S C CWAF AV + + I++G Q V S L+ C
Sbjct: 6 SFDSRKKWPRCKSIATIRDQ-SRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSC 64
Query: 147 --STLNGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQ 204
S GC L A++Y + + + G + Y GKY
Sbjct: 65 CESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGSKI 124
Query: 205 YVQPATEEGLQ-----------------------------DVVSRQPVSVAIDA-TWFNF 234
Y P ++ Q +++ PV F
Sbjct: 125 YKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLN 184
Query: 235 YHGGVFTGPCGNT-PNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRG 291
Y G++ G T H + I+G+G E + PYWL+ N W +W E G RI RG
Sbjct: 185 YKSGIYKHITGETLGGHAIRIIGWGV----ENKAPYWLIANSWNEDWGENGYFRIVRG 238
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 249 NHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL 308
NH V +VGYGT + A G YW+VKN WGT W E G RI RG + +IA AA P+
Sbjct: 10 NHAVLLVGYGTDS-ASGMD-YWIVKNSWGTGWGENGYFRIRRGTDECAIESIAV-AATPI 66
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 38/202 (18%)
Query: 113 YC--CWAFTAV-ATVEGLNKIRTGQLVTR--SKHQLVDCSTLNGCAKNFLENAFEYIRQY 167
YC CWA + A + +N R G + S ++DC C + ++Y Q+
Sbjct: 62 YCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNAGSCEGGNDLSVWDYAHQH 121
Query: 168 QRLASECVYPYQGRQDYYCDWWRSSAS------------------GKYGAIRGYQYVQPA 209
+ E YQ + D CD + + G YG++ G
Sbjct: 122 G-IPDETCNNYQAK-DQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSG------- 172
Query: 210 TEEGLQDVVSRQPVSVAIDAT-WFNFYHGGVFTGPCGNT-PNHGVTIVGYGTTTEAEGQQ 267
E+ + ++ + P+S I AT Y GG++ T NH V++ G+G + E
Sbjct: 173 REKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISDGTE--- 229
Query: 268 PYWLVKNRWGTNWDEGGSMRIF 289
YW+V+N WG W E G +RI
Sbjct: 230 -YWIVRNSWGEPWGERGWLRIV 250
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 38/202 (18%)
Query: 113 YC--CWAFTAV-ATVEGLNKIRTGQLVTR--SKHQLVDCSTLNGCAKNFLENAFEYIRQY 167
YC CWA + A + +N R G + S ++DC C + ++Y Q+
Sbjct: 27 YCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNAGSCEGGNDLSVWDYAHQH 86
Query: 168 QRLASECVYPYQGRQDYYCDWWRSSAS------------------GKYGAIRGYQYVQPA 209
+ E YQ + D CD + + G YG++ G
Sbjct: 87 G-IPDETCNNYQAK-DQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSG------- 137
Query: 210 TEEGLQDVVSRQPVSVAIDATW-FNFYHGGVFTGPCGNT-PNHGVTIVGYGTTTEAEGQQ 267
E+ + ++ + P+S I AT Y GG++ T NH V++ G+G + E
Sbjct: 138 REKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISDGTE--- 194
Query: 268 PYWLVKNRWGTNWDEGGSMRIF 289
YW+V+N WG W E G +RI
Sbjct: 195 -YWIVRNSWGEPWGERGWLRIV 215
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 95/243 (39%), Gaps = 40/243 (16%)
Query: 91 SFYDSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVT---RSKHQLVDC 146
SF W + + ++DQGS CWAF AV + I T V+ ++ L C
Sbjct: 67 SFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCC 126
Query: 147 STL--NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDY-------YCDWWRSSASGK- 196
++ +GC + A+ + + ++ + G + Y + + R +G+
Sbjct: 127 GSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEG 186
Query: 197 ----------------YGAIRGYQY----VQPATEEGLQDVVSRQPVSVAIDA-TWFNFY 235
Y + Y Y V + ++ + ++ PV A + F Y
Sbjct: 187 DTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLY 246
Query: 236 HGGVFTGPCGNT-PNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGG 294
GV+ G H + I+G+G E PYWLV N W T+W + G +I RG
Sbjct: 247 KSGVYQHVTGEMMGGHAIRILGWGV----ENGTPYWLVANSWNTDWGDNGFFKILRGQDH 302
Query: 295 SGL 297
G+
Sbjct: 303 CGI 305
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 96/244 (39%), Gaps = 42/244 (17%)
Query: 91 SFYDSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRT-GQL-VTRSKHQLVDCS 147
SF W+ + ++DQGS CWAF AV + I T G++ V S L+ C
Sbjct: 10 SFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCC 69
Query: 148 TL---NGCAKNFLENAFEYIRQYQRLASECVY-----------------------PYQGR 181
+ +GC + A+ + + + L S VY P G
Sbjct: 70 GIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGE 128
Query: 182 QDY-YCD-WWRSSASGKYGAIRGYQY----VQPATEEGLQDVVSRQPVSVAIDA-TWFNF 234
D C+ + S Y + Y Y V + +E + ++ PV A + F
Sbjct: 129 GDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLT 188
Query: 235 YHGGVFTGPCGNT-PNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVG 293
Y GV+ G+ H + I+G+G E PYWLV N W +W + G +I RG
Sbjct: 189 YKSGVYKHEAGDVMGGHAIRILGWGI----ENGVPYWLVANSWNADWGDNGFFKILRGEN 244
Query: 294 GSGL 297
G+
Sbjct: 245 HCGI 248
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 96/244 (39%), Gaps = 42/244 (17%)
Query: 91 SFYDSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRT-GQL-VTRSKHQLVDCS 147
SF W+ + ++DQGS CWAF AV + I T G++ V S L+ C
Sbjct: 4 SFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCC 63
Query: 148 TL---NGCAKNFLENAFEYIRQYQRLASECVY-----------------------PYQGR 181
+ +GC + A+ + + + L S VY P G
Sbjct: 64 GIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGE 122
Query: 182 QDY-YCD-WWRSSASGKYGAIRGYQY----VQPATEEGLQDVVSRQPVSVAIDA-TWFNF 234
D C+ + S Y + Y Y V + +E + ++ PV A + F
Sbjct: 123 GDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLT 182
Query: 235 YHGGVFTGPCGNT-PNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVG 293
Y GV+ G+ H + I+G+G E PYWLV N W +W + G +I RG
Sbjct: 183 YKSGVYKHEAGDVMGGHAIRILGWGI----ENGVPYWLVANSWNADWGDNGFFKILRGEN 238
Query: 294 GSGL 297
G+
Sbjct: 239 HCGI 242
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 94/243 (38%), Gaps = 40/243 (16%)
Query: 91 SFYDSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVT---RSKHQLVDC 146
SF W + + ++DQGS CWAF AV + I T V+ ++ L C
Sbjct: 6 SFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCC 65
Query: 147 STL--NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDY-------YCDWWRSSASGKY 197
++ +GC + A+ + + ++ + G + Y + + R +G+
Sbjct: 66 GSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEG 125
Query: 198 GAIRGYQYVQP---------------------ATEEGLQDVVSRQPVSVAIDA-TWFNFY 235
+ + +P + ++ + ++ PV A + F Y
Sbjct: 126 DTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLY 185
Query: 236 HGGVFTGPCGNT-PNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGG 294
GV+ G H + I+G+G E PYWLV N W T+W + G +I RG
Sbjct: 186 KSGVYQHVTGEMMGGHAIRILGWGV----ENGTPYWLVANSWNTDWGDNGFFKILRGQDH 241
Query: 295 SGL 297
G+
Sbjct: 242 CGI 244
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 94/243 (38%), Gaps = 40/243 (16%)
Query: 91 SFYDSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVT---RSKHQLVDC 146
SF W + + ++DQGS CWAF AV + I T V+ ++ L C
Sbjct: 4 SFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCC 63
Query: 147 STL--NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDY-------YCDWWRSSASGKY 197
++ +GC + A+ + + ++ + G + Y + + R +G+
Sbjct: 64 GSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEG 123
Query: 198 GAIRGYQYVQP---------------------ATEEGLQDVVSRQPVSVAIDA-TWFNFY 235
+ + +P + ++ + ++ PV A + F Y
Sbjct: 124 DTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLY 183
Query: 236 HGGVFTGPCGNT-PNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGG 294
GV+ G H + I+G+G E PYWLV N W T+W + G +I RG
Sbjct: 184 KSGVYQHVTGEMMGGHAIRILGWGV----ENGTPYWLVANSWNTDWGDNGFFKILRGQDH 239
Query: 295 SGL 297
G+
Sbjct: 240 CGI 242
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 95/243 (39%), Gaps = 40/243 (16%)
Query: 91 SFYDSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVT---RSKHQLVDC 146
SF W + + ++DQGS CWAF AV + I T V+ ++ L C
Sbjct: 5 SFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCC 64
Query: 147 STL--NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDY-------YCDWWRSSASGK- 196
++ +GC + A+ + + ++ + G + Y + + R +G+
Sbjct: 65 GSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEG 124
Query: 197 ----------------YGAIRGYQY----VQPATEEGLQDVVSRQPVSVAIDA-TWFNFY 235
Y + Y Y V + ++ + ++ PV A + F Y
Sbjct: 125 DTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLY 184
Query: 236 HGGVFTGPCGNT-PNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGG 294
GV+ G H + I+G+G E PYWLV N W T+W + G +I RG
Sbjct: 185 KSGVYQHVTGEMMGGHAIRILGWGV----ENGTPYWLVANSWNTDWGDNGFFKILRGQDH 240
Query: 295 SGL 297
G+
Sbjct: 241 CGI 243
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 244 CGN-TPNHGVTIVGYGTTTEAEGQQ-PYWLVKNRWGTNWDEGGSMRI 288
CG+ T +H V IVGYG +EG++ YW+V+N WG W + G ++
Sbjct: 193 CGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 244 CGN-TPNHGVTIVGYGTTTEAEGQQ-PYWLVKNRWGTNWDEGGSMRI 288
CG+ T +H V IVGYG +EG++ YW+V+N WG W + G ++
Sbjct: 192 CGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 42/244 (17%)
Query: 91 SFYDSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRT-GQL-VTRSKHQLVDCS 147
SF W+ + ++DQGS WAF AV + I T G++ V S L+ C
Sbjct: 66 SFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCC 125
Query: 148 TL---NGCAKNFLENAFEYIRQYQRLASECVY-------PYQGRQ-DYYCDWWRSSASGK 196
+ +GC + A+ + + + L S VY PY +++ + R +G+
Sbjct: 126 GIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGE 184
Query: 197 -----------------YGAIRGYQY----VQPATEEGLQDVVSRQPVSVAIDA-TWFNF 234
Y + Y Y V + +E + ++ PV A + F
Sbjct: 185 GDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLT 244
Query: 235 YHGGVFTGPCGNT-PNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVG 293
Y GV+ G+ H + I+G+G E PYWLV N W +W + G +I RG
Sbjct: 245 YKSGVYKHEAGDVMGGHAIRILGWGI----ENGVPYWLVANSWNADWGDNGFFKILRGEN 300
Query: 294 GSGL 297
G+
Sbjct: 301 HCGI 304
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 94/243 (38%), Gaps = 40/243 (16%)
Query: 91 SFYDSIDWNERGAVTPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVT---RSKHQLVDC 146
SF W + + ++DQGS WAF AV + I T V+ ++ L C
Sbjct: 10 SFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCC 69
Query: 147 STL--NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDY-------YCDWWRSSASGK- 196
++ +GC + A+ + + ++ + G + Y + + R +G+
Sbjct: 70 GSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTGEG 129
Query: 197 ----------------YGAIRGYQY----VQPATEEGLQDVVSRQPVSVAIDA-TWFNFY 235
Y + Y Y V + ++ + ++ PV A + F Y
Sbjct: 130 DTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLY 189
Query: 236 HGGVFTGPCGNT-PNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGG 294
GV+ G H + I+G+G E PYWLV N W T+W + G +I RG
Sbjct: 190 KSGVYQHVTGEMMGGHAIRILGWGV----ENGTPYWLVANSWNTDWGDNGFFKILRGQDH 245
Query: 295 SGL 297
G+
Sbjct: 246 CGI 248
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 211 EEGLQDVVSRQPVSVAIDA-TWFNFYHGGVFTGPCGNT-PNHGVTIVGYGTTTEAEGQQP 268
+E + ++ PV A + F Y GV+ G H + I+G+G E P
Sbjct: 158 KEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGV----ENGTP 213
Query: 269 YWLVKNRWGTNWDEGGSMRIFRGVGGSGL 297
YWLV N W T+W + G +I RG G+
Sbjct: 214 YWLVANSWNTDWGDNGFFKILRGQDHCGI 242
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 211 EEGLQDVVSRQPVSVAIDA-TWFNFYHGGVFTGPCGNT-PNHGVTIVGYGTTTEAEGQQP 268
+E + ++ PV A + F Y GV+ G H + I+G+G E P
Sbjct: 158 KEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGV----ENGTP 213
Query: 269 YWLVKNRWGTNWDEGGSMRIFRGVGGSGL 297
YWLV N W T+W + G +I RG G+
Sbjct: 214 YWLVGNSWNTDWGDNGFFKILRGQDHCGI 242
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 211 EEGLQDVVSRQPVSVAIDA-TWFNFYHGGVFTGPCGNT-PNHGVTIVGYGTTTEAEGQQP 268
+E + ++ PV A + F Y GV+ G H + I+G+G E P
Sbjct: 110 KEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGV----ENGTP 165
Query: 269 YWLVKNRWGTNWDEGGSMRIFRG 291
YWLV N W T+W + G +I RG
Sbjct: 166 YWLVGNSWNTDWGDNGFFKILRG 188
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 206 VQPATEEGLQDVVSRQPVSVAIDA-TWFNFYHGGVFTGPCGNT-PNHGVTIVGYGTTTEA 263
V + ++ + ++ PV A + F Y GV+ G H + I+G+G
Sbjct: 104 VSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV---- 159
Query: 264 EGQQPYWLVKNRWGTNWDEGGSMRIFRG 291
E PYWLV N W T+W + G +I RG
Sbjct: 160 ENGTPYWLVANSWNTDWGDNGFFKILRG 187
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 204 QYVQPATEEGLQDVVSRQPVSVAIDA-TWFNFYHGGVFTGPCGN-TPNHGVTIVGYGTTT 261
Y ++ ++++ R P VA D F Y+ GV+ G H V +VG+GT+
Sbjct: 234 SYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSN 293
Query: 262 EAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL 308
PYW + N W T W G I RG G+ +A PL
Sbjct: 294 GV----PYWKIANSWNTEWGMDGYFLIRRGSSECGI-EDGGSAGIPL 335
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 204 QYVQPATEEGLQDVVSRQPVSVAIDA-TWFNFYHGGVFTGPCGN-TPNHGVTIVGYGTTT 261
Y ++ ++++ R P VA D F Y+ GV+ G H V +VG+GT+
Sbjct: 212 SYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSN 271
Query: 262 EAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL 308
PYW + N W T W G I RG G+ +A PL
Sbjct: 272 GV----PYWKIANSWNTEWGMDGYFLIRRGSSECGI-EDGGSAGIPL 313
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 204 QYVQPATEEGLQDVVSRQPVSVAIDA-TWFNFYHGGVFTGPCGN-TPNHGVTIVGYGTTT 261
Y ++ ++++ R P VA D F Y+ GV+ G H V +VG+GT+
Sbjct: 211 SYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSN 270
Query: 262 EAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL 308
PYW + N W T W G I RG G+ +A PL
Sbjct: 271 GV----PYWKIANSWNTEWGMDGYFLIRRGSSECGI-EDGGSAGIPL 312
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In
Complex With Its Propeptide
Length = 106
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 22 FARTYKDQAEKEMRFKIFKKNHEF------------LRLNKFADLTREKFLASYTGYKPP 69
+A++Y + EK+ R+ IFK N + L++N F DL+R++F Y G+K
Sbjct: 32 YAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLSRDEFRRKYLGFKKS 91
Query: 70 PTDHPH 75
H
Sbjct: 92 RNLKSH 97
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 269 YWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP 307
YWLVKN WG W GG +++ + C IA+ A+YP
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDR--RNHCGIASAASYP 40
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 247 TPNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTN 279
T +HG I YG + EG + Y+ VKN WGTN
Sbjct: 315 TDDHGXQI--YGIAKDQEGNE-YYXVKNSWGTN 344
>pdb|3Q22|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Gtp And
Magnesium: Substrate Complex I
pdb|3Q22|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Gtp And
Magnesium: Substrate Complex I
pdb|3Q23|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Gmpcpp And
Manganese: Sustrate Complex Ii
pdb|3Q23|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Gmpcpp And
Manganese: Sustrate Complex Ii
pdb|3Q0A|A Chain A, X-Ray Crystal Structure Of The Transcription Initiation
Complex Of The N4 Mini-Vrnap With P2 Promoter: Mismatch
Complex
pdb|3Q0A|B Chain B, X-Ray Crystal Structure Of The Transcription Initiation
Complex Of The N4 Mini-Vrnap With P2 Promoter: Mismatch
Complex
pdb|4FF1|A Chain A, N4 Mini-vrnap Transcription Initiation Complex, 1 Min After
Soaking Gtp, Atp And Mn
pdb|4FF1|B Chain B, N4 Mini-vrnap Transcription Initiation Complex, 1 Min After
Soaking Gtp, Atp And Mn
pdb|4FF2|A Chain A, N4 Mini-vrnap Transcription Initiation Complex, 2 Min After
Soaking Gtp, Atp And Mn
pdb|4FF2|B Chain B, N4 Mini-vrnap Transcription Initiation Complex, 2 Min After
Soaking Gtp, Atp And Mn
pdb|4FF3|A Chain A, N4 Mini-vrnap Transcription Initiation Complex, 3 Min After
Soaking Gtp, Atp And Mn
pdb|4FF3|B Chain B, N4 Mini-vrnap Transcription Initiation Complex, 3 Min After
Soaking Gtp, Atp And Mn
pdb|4FF4|A Chain A, N4 Mini-vrnap Transcription Initiation Complex, 4 Min After
Soaking Gtp, Atp And Mn
pdb|4FF4|B Chain B, N4 Mini-vrnap Transcription Initiation Complex, 4 Min After
Soaking Gtp, Atp And Mn
Length = 1118
Score = 28.5 bits (62), Expect = 4.8, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 48 LNKFADLTREKFLASYTGYKPPPTDHPHSNRSNWFKNLNSSKMS 91
LN D +R+ A YT ++ P + + + + + KN++ SK+S
Sbjct: 969 LNDITDASRKANEAVYTSWQGNPIKNVYESYAKFMKNVDFSKLS 1012
>pdb|3C2P|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap P1 Promoter
Complex
pdb|3C2P|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap P1 Promoter
Complex
pdb|3C3L|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap P2 Promoter
Complex
pdb|3C3L|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap P2 Promoter
Complex
pdb|3C46|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap P2_7a Promoter
Complex Soaked With Mgcl2
pdb|3C46|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap P2_7a Promoter
Complex Soaked With Mgcl2
pdb|3Q24|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Pppgpg And
Pyrophosphate: Product Complex
pdb|3Q24|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Pppgpg And
Pyrophosphate: Product Complex
Length = 1117
Score = 28.5 bits (62), Expect = 4.8, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 48 LNKFADLTREKFLASYTGYKPPPTDHPHSNRSNWFKNLNSSKMS 91
LN D +R+ A YT ++ P + + + + + KN++ SK+S
Sbjct: 969 LNDITDASRKANEAVYTSWQGNPIKNVYESYAKFMKNVDFSKLS 1012
>pdb|2PO4|A Chain A, X-Ray Crystal Structure Of Polymerase Domain Of The
Bacteriophage N4 Virion Rna Polymerase
Length = 1104
Score = 28.5 bits (62), Expect = 4.8, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 48 LNKFADLTREKFLASYTGYKPPPTDHPHSNRSNWFKNLNSSKMS 91
LN D +R+ A YT ++ P + + + + + KN++ SK+S
Sbjct: 957 LNDITDASRKANEAVYTSWQGNPIKNVYESYAKFMKNVDFSKLS 1000
>pdb|2Q6Q|A Chain A, Crystal Structure Of Spc42p, A Critical Component Of
Spindle Pole Body In Budding Yeast
pdb|2Q6Q|B Chain B, Crystal Structure Of Spc42p, A Critical Component Of
Spindle Pole Body In Budding Yeast
Length = 74
Score = 28.5 bits (62), Expect = 5.2, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 29 QAEKEMRFKIFKKNHEFLRLNKFADLTREKF 59
Q KE+ FK+ +K +E L K A+ R K
Sbjct: 3 QQNKELNFKLREKQNEIFELKKIAETLRSKL 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,168,029
Number of Sequences: 62578
Number of extensions: 442317
Number of successful extensions: 1307
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 114
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)