BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044449
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 7/135 (5%)
Query: 64 HKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKDAIFPHQHNE 123
H + +L K YGPI S+++G TTV+V +AK +L F R + +N
Sbjct: 32 HNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNR 91
Query: 124 FGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRR---KKIKNLLSYVEENCRAGKAI 180
G+ W+ R+L + F K D +Q+L + ++I L + G++I
Sbjct: 92 KGIAFADSGAHWQLHRRLA-MATFALFK-DGDQKLEKIICQEISTLCDMLA--THNGQSI 147
Query: 181 DISQVVFNTSLNLLS 195
DIS VF N++S
Sbjct: 148 DISFPVFVAVTNVIS 162
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 30 MALSSFSRGRKKXXXXXXXXXXVIGNLLELGEKP-HKSLAELAKIYGPILSLKLGEVTTV 88
MA + S+GR VIGN+L++G K KSL L+K+YGP+ +L G V
Sbjct: 1 MAKKTSSKGRPPGPTPLP----VIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIV 56
Query: 89 VVSSAPMAKYILQDHDSSFYNRMVKDAIFP---HQHNEFGMVLLPVSTTWKNLRKL 141
V+ K L D F R IFP + FG+V WK +R+
Sbjct: 57 VLHGYEAVKEALIDLGEEFSGR----GIFPLAERANRGFGIVFS-NGKKWKEIRRF 107
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 52 VIGNLLELGEKP-HKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNR 110
VIGN+L++G K KSL L+K+YGP+ +L G VV+ K L D F R
Sbjct: 21 VIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGR 80
Query: 111 MVKDAIFP---HQHNEFGMVLLPVSTTWKNLRKL 141
IFP + FG+V WK +R+
Sbjct: 81 ----GIFPLAERANRGFGIVFS-NGKKWKEIRRF 109
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 52 VIGNLLELGEKP-HKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNR 110
VIGN+L++ K KSL L+KIYGP+ +L G VV+ + K L D F R
Sbjct: 21 VIGNILQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVLHGYEVVKEALIDLGEEFSGR 80
Query: 111 MVKDAIFP---HQHNEFGMVLLPVSTTWKNLRKL 141
FP + FG+V WK +R+
Sbjct: 81 ----GHFPLAERANRGFGIV-FSNGKRWKEIRRF 109
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 52 VIGNLLELGEKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNR 110
+IG++L LG+ PH +L+ +++ YG +L +++G VV+S + L F R
Sbjct: 21 LIGHMLTLGKNPHLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQALVRQGDDFKGR 79
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 52 VIGNLLELGEKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNR 110
+IGN +G+ H S A LA+ YG + ++LG VV++ L S+F +R
Sbjct: 19 LIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADR 77
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 52 VIGNLLELGEKP-HKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNR 110
+IGN+L++ K KSL + ++ YGP+ ++ LG TVV+ K L D F R
Sbjct: 20 IIGNILQIDAKDISKSLTKFSECYGPVFTVYLGMKPTVVLHGYEAVKEALVDLGEEFAGR 79
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 52 VIGNLLELGEKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNR 110
++G++L LG+ PH +L+ +++ YG +L +++G +V+S + L F R
Sbjct: 26 LLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGR 84
>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
Length = 482
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 52 VIGNLLELG-----EKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSS 106
++G+LLE+ +K H +LAE K YG I +KLG +V + S + + + + +
Sbjct: 34 LLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTESAH 93
Query: 107 FYNRMVKD--AIFPHQHNEFGMVLLPVSTTWKNLR 139
+K A H++ +G+++L W+ +R
Sbjct: 94 PQRLEIKPWKAYRDHRNEAYGLMIL-EGQEWQRVR 127
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 52 VIGNLLELGEKP-HKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNR 110
+IGN+L++ K KS +K+YGP+ ++ G VV K L D+ F R
Sbjct: 20 IIGNMLQIDVKDICKSFTNFSKVYGPVFTVYFGMNPIVVFHGYEAVKEALIDNGEEFSGR 79
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 61 EKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNR 110
E PH + + +++YG I SL LG ++TVV++ + K L F +R
Sbjct: 34 ELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADR 83
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 61 EKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNR 110
E PH + + +++YG I SL LG ++TVV++ + K L F +R
Sbjct: 34 ELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADR 83
>pdb|3NA0|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 471
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 11/135 (8%)
Query: 74 YGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKDAIFPHQHNEFGM-VLLPVS 132
YGPI KLG V +V V + + + ++ + HQ+ + + VLL S
Sbjct: 42 YGPIYREKLGNVESVYVIDPEDVALLFKSEGPNPERFLIPPWVAYHQYYQRPIGVLLKKS 101
Query: 133 TTWKNLRKLCNLHIFTTQK-------LDANQELRRKKIKNLLSYVEENCRAGKAIDISQV 185
WK R N + + LDA + R + L +++ + DIS
Sbjct: 102 AAWKKDRVALNQEVMAPEATKNFLPLLDA---VSRDFVSVLHRRIKKAGSGNYSGDISDD 158
Query: 186 VFNTSLNLLSNTIFS 200
+F + ++N IF
Sbjct: 159 LFRFAFESITNVIFG 173
>pdb|3N9Y|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Z|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 487
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 11/135 (8%)
Query: 74 YGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKDAIFPHQHNEFGM-VLLPVS 132
YGPI KLG V +V V + + + ++ + HQ+ + + VLL S
Sbjct: 45 YGPIYREKLGNVESVYVIDPEDVALLFKSEGPNPERFLIPPWVAYHQYYQRPIGVLLKKS 104
Query: 133 TTWKNLRKLCNLHIFTTQK-------LDANQELRRKKIKNLLSYVEENCRAGKAIDISQV 185
WK R N + + LDA + R + L +++ + DIS
Sbjct: 105 AAWKKDRVALNQEVMAPEATKNFLPLLDA---VSRDFVSVLHRRIKKAGSGNYSGDISDD 161
Query: 186 VFNTSLNLLSNTIFS 200
+F + ++N IF
Sbjct: 162 LFRFAFESITNVIFG 176
>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In Complex
With Cholesterol-3-Sulphate
pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
Fluvoxamine Bound
pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With Bicalutamide
Bound
Length = 456
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 71 AKIYGPILSLKLGEVTTVVVSSAPMAKYILQ----DHDSSFYNRMVKDAIFPHQHNEFGM 126
AK YGP++ + + T+V+V+S K L + DS Y + +F + G+
Sbjct: 20 AKKYGPVVRVNVFHKTSVIVTSPESVKKFLMSTKYNKDSKMYRAL--QTVFGERLFGQGL 77
Query: 127 VLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAGKAIDISQVV 186
V W R++ +L F+ L + E +K + L+ +E + + ++
Sbjct: 78 VSECNYERWHKQRRVIDL-AFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDML 136
Query: 187 FNTSLNLLSNTIFS 200
T++++L+ F
Sbjct: 137 TYTAMDILAKAAFG 150
>pdb|3MZS|A Chain A, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|B Chain B, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|C Chain C, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|D Chain D, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
Length = 486
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 74 YGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKDAIFPHQHNEFGM-VLLPVS 132
YGPI KLG + +V + ++ + S + + H++ + + VL S
Sbjct: 47 YGPIYREKLGNLESVYIIHPEDVAHLFKFEGSYPERYDIPPWLAYHRYYQKPIGVLFKKS 106
Query: 133 TTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCR---AGKAI-DISQVVFN 188
TWK R + N + + + L ++ +S + + + +GK + DI + +F+
Sbjct: 107 GTWKKDRVVLNTEVMAPEAIKNFIPLLNPVSQDFVSLLHKRIKQQGSGKFVGDIKEDLFH 166
Query: 189 TSLNLLSNTIFS 200
+ ++N +F
Sbjct: 167 FAFESITNVMFG 178
>pdb|1L9U|H Chain H, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|Q Chain Q, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
Length = 332
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 58 ELGEKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKDAIF 117
ELG +P S E+A+ GP K E T + + + D SFY + D
Sbjct: 190 ELGREP--SYEEIAEAMGPGWDAKRVEETLKIAQEPVSLETPIGDEKDSFYGDFIPDENL 247
Query: 118 P 118
P
Sbjct: 248 P 248
>pdb|1L9Z|H Chain H, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 438
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 58 ELGEKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKDAIF 117
ELG +P S E+A+ GP K E T + + + D SFY + D
Sbjct: 296 ELGREP--SYEEIAEAMGPGWDAKRVEETLKIAQEPVSLETPIGDEKDSFYGDFIPDENL 353
Query: 118 P 118
P
Sbjct: 354 P 354
>pdb|2YY8|A Chain A, Crystal Structure Of Archaeal Trna-Methylase For Position
56 (Atrm56) From Pyrococcus Horikoshii, Complexed With
S- Adenosyl-L-Methionine
pdb|2YY8|B Chain B, Crystal Structure Of Archaeal Trna-Methylase For Position
56 (Atrm56) From Pyrococcus Horikoshii, Complexed With
S- Adenosyl-L-Methionine
Length = 201
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Query: 79 SLKLGEVTTVVVSSA--PMAKYILQDHDSSFYNRMVKDAIFPHQHNEFGMVLLPVSTTWK 136
LK GE ++V + P Y L D++ + N+ PH VLL K
Sbjct: 97 KLKKGEDFMIIVGAEKVPREVYELADYNVAIGNQ-------PHSEVAALAVLLDRLLEGK 149
Query: 137 NLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAGKA 179
L+K F K+ + R KK+ + Y E++ GKA
Sbjct: 150 GLKKE-----FKGAKIKIVPQARGKKVVEVQGYAEQDKAEGKA 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,805,318
Number of Sequences: 62578
Number of extensions: 161732
Number of successful extensions: 605
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 19
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)