Query 044449
Match_columns 200
No_of_seqs 141 out of 1755
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 03:24:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 100.0 6.6E-31 1.4E-35 203.2 18.8 159 41-200 25-185 (489)
2 PLN02687 flavonoid 3'-monooxyg 100.0 3.2E-29 7E-34 197.9 19.8 168 32-200 24-191 (517)
3 PLN03112 cytochrome P450 famil 100.0 3E-28 6.4E-33 192.4 20.5 168 33-200 23-190 (514)
4 PLN02971 tryptophan N-hydroxyl 100.0 4E-28 8.7E-33 192.5 20.4 167 34-200 49-218 (543)
5 PTZ00404 cytochrome P450; Prov 100.0 1.6E-28 3.4E-33 192.7 16.9 160 38-200 25-184 (482)
6 PLN03234 cytochrome P450 83B1; 100.0 4.9E-28 1.1E-32 190.6 19.1 163 38-200 24-187 (499)
7 PLN00110 flavonoid 3',5'-hydro 100.0 6.4E-28 1.4E-32 189.8 19.5 172 29-200 18-189 (504)
8 PLN02183 ferulate 5-hydroxylas 100.0 6.7E-28 1.4E-32 190.4 18.1 160 38-200 32-191 (516)
9 KOG0158 Cytochrome P450 CYP3/C 100.0 1.9E-27 4.2E-32 182.4 18.0 158 41-200 30-190 (499)
10 PLN00168 Cytochrome P450; Prov 100.0 4.2E-27 9.1E-32 186.0 19.8 162 37-200 30-196 (519)
11 PLN02394 trans-cinnamate 4-mon 100.0 3.4E-27 7.3E-32 186.1 19.1 164 37-200 25-190 (503)
12 PLN02966 cytochrome P450 83A1 100.0 2.2E-27 4.9E-32 186.9 17.6 167 33-200 20-188 (502)
13 PLN02290 cytokinin trans-hydro 99.9 4.8E-27 1E-31 185.7 13.1 158 40-200 40-217 (516)
14 PLN02500 cytochrome P450 90B1 99.9 2.3E-26 4.9E-31 180.8 15.2 160 33-200 29-194 (490)
15 PLN02196 abscisic acid 8'-hydr 99.9 5.7E-26 1.2E-30 177.3 15.7 158 34-200 27-185 (463)
16 PLN02655 ent-kaurene oxidase 99.9 1.1E-25 2.4E-30 175.9 15.6 157 44-200 1-160 (466)
17 PLN03018 homomethionine N-hydr 99.9 4.2E-24 9E-29 169.0 19.8 160 40-200 38-201 (534)
18 PLN02774 brassinosteroid-6-oxi 99.9 7.7E-25 1.7E-29 171.0 12.9 154 39-200 28-182 (463)
19 PLN02302 ent-kaurenoic acid ox 99.9 1.1E-23 2.5E-28 165.7 16.6 154 38-200 38-199 (490)
20 PLN03195 fatty acid omega-hydr 99.9 2.2E-23 4.8E-28 164.9 15.4 154 42-200 30-188 (516)
21 PF00067 p450: Cytochrome P450 99.9 2.3E-24 5E-29 167.6 9.4 154 44-200 1-159 (463)
22 KOG0157 Cytochrome P450 CYP4/C 99.9 1.2E-23 2.6E-28 164.9 13.3 156 40-200 33-192 (497)
23 PLN03141 3-epi-6-deoxocathaste 99.9 1.5E-23 3.2E-28 163.4 13.1 154 39-200 4-163 (452)
24 PLN02987 Cytochrome P450, fami 99.9 2.9E-23 6.3E-28 162.1 14.1 158 33-200 21-184 (472)
25 PLN02169 fatty acid (omega-1)- 99.9 5.9E-23 1.3E-27 161.6 15.8 155 42-200 31-193 (500)
26 PLN02936 epsilon-ring hydroxyl 99.9 5.4E-22 1.2E-26 155.9 13.8 152 45-200 15-172 (489)
27 PLN02738 carotene beta-ring hy 99.9 8.2E-22 1.8E-26 158.1 14.7 143 54-200 143-286 (633)
28 PLN02648 allene oxide synthase 99.9 1.4E-22 3E-27 157.8 9.7 155 40-200 15-189 (480)
29 KOG0159 Cytochrome P450 CYP11/ 99.8 1.6E-19 3.4E-24 137.2 12.6 161 38-200 46-218 (519)
30 PLN02426 cytochrome P450, fami 99.8 2.2E-17 4.7E-22 130.2 15.2 145 50-200 49-199 (502)
31 KOG0684 Cytochrome P450 [Secon 99.7 4.7E-16 1E-20 116.2 13.1 149 42-196 31-182 (486)
32 COG2124 CypX Cytochrome P450 [ 99.3 1.7E-11 3.8E-16 94.6 10.5 131 63-200 24-158 (411)
33 PF13625 Helicase_C_3: Helicas 63.1 22 0.00047 22.9 4.5 40 61-102 74-113 (129)
34 COG1927 Mtd Coenzyme F420-depe 60.9 58 0.0012 23.2 7.0 118 51-171 35-165 (277)
35 PRK00994 F420-dependent methyl 55.7 66 0.0014 23.4 6.0 116 53-171 37-165 (277)
36 KOG0114 Predicted RNA-binding 54.4 51 0.0011 20.6 5.8 61 40-102 10-76 (124)
37 PF01102 Glycophorin_A: Glycop 52.3 20 0.00043 23.0 2.8 9 29-37 85-93 (122)
38 PF13893 RRM_5: RNA recognitio 50.2 37 0.00081 17.7 4.1 34 68-101 2-39 (56)
39 KOG3653 Transforming growth fa 45.2 1E+02 0.0022 25.1 6.1 35 73-108 222-257 (534)
40 PRK10597 DNA damage-inducible 40.1 80 0.0017 18.6 4.3 39 64-102 23-69 (81)
41 PF09926 DUF2158: Uncharacteri 38.4 37 0.0008 18.2 2.1 16 75-90 4-19 (53)
42 cd08780 Death_TRADD Death Doma 35.8 1E+02 0.0022 18.6 5.0 67 132-198 13-87 (90)
43 PF08780 NTase_sub_bind: Nucle 33.9 49 0.0011 21.2 2.5 34 124-160 72-108 (124)
44 KOG4241 Mitochondrial ribosoma 33.8 40 0.00088 23.8 2.2 28 75-102 137-164 (245)
45 PF05961 Chordopox_A13L: Chord 32.7 97 0.0021 17.5 4.2 17 19-35 9-25 (68)
46 COG3660 Predicted nucleoside-d 32.3 80 0.0017 23.6 3.6 49 46-94 128-180 (329)
47 PLN03134 glycine-rich RNA-bind 31.1 1.6E+02 0.0034 19.4 5.3 40 63-102 47-95 (144)
48 cd08318 Death_NMPP84 Death dom 30.8 1.2E+02 0.0026 17.9 5.5 63 132-197 18-84 (86)
49 PF04206 MtrE: Tetrahydrometha 30.1 73 0.0016 23.1 3.0 29 46-74 153-189 (269)
50 PHA01327 hypothetical protein 29.4 20 0.00044 17.9 0.2 19 124-142 11-29 (49)
51 PF01993 MTD: methylene-5,6,7, 29.0 1.5E+02 0.0031 21.8 4.3 105 64-171 48-164 (276)
52 COG1707 ACT domain-containing 29.0 89 0.0019 21.3 3.1 38 60-97 153-195 (218)
53 KOG4128 Bleomycin hydrolases a 28.6 2.5E+02 0.0055 21.8 5.7 54 145-198 168-225 (457)
54 PHA03049 IMV membrane protein; 27.5 1.2E+02 0.0027 17.0 4.3 15 19-33 9-23 (68)
55 KOG0107 Alternative splicing f 27.5 1.1E+02 0.0024 21.2 3.4 36 64-99 24-63 (195)
56 PLN03120 nucleic acid binding 26.1 2.8E+02 0.006 20.6 6.3 49 63-111 17-71 (260)
57 TIGR01642 U2AF_lg U2 snRNP aux 26.0 2.6E+02 0.0056 22.7 6.0 47 65-111 434-493 (509)
58 PF02681 DUF212: Divergent PAP 25.6 74 0.0016 21.0 2.3 54 147-200 81-137 (141)
59 PF14605 Nup35_RRM_2: Nup53/35 23.8 1.3E+02 0.0027 15.9 4.1 36 62-97 12-50 (53)
60 PRK14584 hmsS hemin storage sy 23.4 76 0.0017 21.3 2.1 10 63-72 111-120 (153)
61 TIGR01113 mtrE N5-methyltetrah 22.8 1E+02 0.0022 22.6 2.7 29 46-74 153-189 (283)
62 PRK09458 pspB phage shock prot 22.3 1.7E+02 0.0038 17.0 3.9 19 19-37 11-29 (75)
63 COG4471 Uncharacterized protei 21.9 1.9E+02 0.0042 17.3 4.7 35 68-102 19-53 (90)
64 PRK00972 tetrahydromethanopter 21.7 1.2E+02 0.0026 22.3 2.9 29 46-74 159-195 (292)
65 PHA03048 IMV membrane protein; 21.5 1.1E+02 0.0025 18.3 2.3 30 1-30 1-30 (93)
66 PF08503 DapH_N: Tetrahydrodip 21.3 1.4E+02 0.003 17.7 2.7 24 83-106 40-63 (83)
67 COG2069 CdhD CO dehydrogenase/ 21.3 1.9E+02 0.0042 22.0 3.9 35 60-94 149-185 (403)
68 TIGR01622 SF-CC1 splicing fact 21.2 2.9E+02 0.0063 22.0 5.4 45 66-110 388-438 (457)
69 COG5329 Phosphoinositide polyp 20.9 87 0.0019 26.0 2.3 27 61-87 293-319 (570)
70 cd08777 Death_RIP1 Death Domai 20.8 2E+02 0.0043 17.1 6.1 39 132-173 13-56 (86)
71 smart00362 RRM_2 RNA recogniti 20.4 1.5E+02 0.0032 15.4 5.3 39 64-102 13-58 (72)
72 PHA02902 putative IMV membrane 20.4 1.8E+02 0.0038 16.3 2.9 8 22-29 13-20 (70)
73 TIGR03422 mito_frataxin fratax 20.2 1.3E+02 0.0028 18.4 2.5 28 75-102 35-62 (97)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=6.6e-31 Score=203.19 Aligned_cols=159 Identities=30% Similarity=0.574 Sum_probs=142.5
Q ss_pred CCCCCCCCCccccccccccCCC-chHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCcc-cccccc
Q 044449 41 KPLPPGPTPYPVIGNLLELGEK-PHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMV-KDAIFP 118 (200)
Q Consensus 41 ~~~~p~p~~~p~~g~~~~~~~~-~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~-~~~~~~ 118 (200)
.+.||||+++|++||++++... ++..+.++.++|||++.+++|..++|+++|++.++|++.+++..|++|+. ......
T Consensus 25 ~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~~ 104 (489)
T KOG0156|consen 25 RNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLKY 104 (489)
T ss_pred CCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHHH
Confidence 6889999999999999999766 99999999999999999999999999999999999999999999999997 223355
Q ss_pred cccCCcceeeccCCcchHHHHhhhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHHHHHHHHHh
Q 044449 119 HQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTSLNLLSNTI 198 (200)
Q Consensus 119 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~ 198 (200)
....+.+++++.+|+.||++||+....+++.+.++...+.-.++++++++.+.+ ...++++|+.+.+...+.++|++++
T Consensus 105 ~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~-~~~~~~vdl~~~l~~~~~nvI~~~~ 183 (489)
T KOG0156|consen 105 LSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSK-SKKGEPVDLSELLDLLVGNVICRML 183 (489)
T ss_pred hcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHh-cCCCceeeHHHHHHHHHHHHHHHHH
Confidence 555689999998899999999999878899999998877778999999999975 2233789999999999999999999
Q ss_pred cC
Q 044449 199 FS 200 (200)
Q Consensus 199 fG 200 (200)
||
T Consensus 184 fG 185 (489)
T KOG0156|consen 184 FG 185 (489)
T ss_pred hC
Confidence 98
No 2
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.97 E-value=3.2e-29 Score=197.88 Aligned_cols=168 Identities=34% Similarity=0.612 Sum_probs=140.3
Q ss_pred hhcCCCCCCCCCCCCCCCccccccccccCCCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCc
Q 044449 32 LSSFSRGRKKPLPPGPTPYPVIGNLLELGEKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRM 111 (200)
Q Consensus 32 ~~~~~~~~~~~~~p~p~~~p~~g~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~ 111 (200)
.+...+.++.+.||||.++|++|+++.+..+++.++.+++++||+++++++|+.++++++||+++++++.++...|++++
T Consensus 24 ~~~~~~~~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~ 103 (517)
T PLN02687 24 RRGGSGKHKRPLPPGPRGWPVLGNLPQLGPKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRP 103 (517)
T ss_pred ccccCCCCCCCCCccCCCCCccccHHhcCCchhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCC
Confidence 33334445556789999999999998887778999999999999999999999999999999999999998878888876
Q ss_pred ccccccccccCCcceeeccCCcchHHHHhhhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHHH
Q 044449 112 VKDAIFPHQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTSL 191 (200)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~ 191 (200)
...........+.+++++.+|+.|+++|+.+.+++|+.++++.+.+.+.++++++++.|++.. +++++|+.+.++.+++
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~-~~~~vd~~~~~~~~t~ 182 (517)
T PLN02687 104 PNSGAEHMAYNYQDLVFAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELARQH-GTAPVNLGQLVNVCTT 182 (517)
T ss_pred CccchhhhccCCceeEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHhc-CCCceeHHHHHHHHHH
Confidence 543333232234566677679999999999933899999999999999999999999996532 4567999999999999
Q ss_pred HHHHHHhcC
Q 044449 192 NLLSNTIFS 200 (200)
Q Consensus 192 ~vi~~~~fG 200 (200)
|+++.++||
T Consensus 183 dvi~~~~fG 191 (517)
T PLN02687 183 NALGRAMVG 191 (517)
T ss_pred HHHHHHHhC
Confidence 999999987
No 3
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.96 E-value=3e-28 Score=192.45 Aligned_cols=168 Identities=30% Similarity=0.562 Sum_probs=138.2
Q ss_pred hcCCCCCCCCCCCCCCCccccccccccCCCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCcc
Q 044449 33 SSFSRGRKKPLPPGPTPYPVIGNLLELGEKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMV 112 (200)
Q Consensus 33 ~~~~~~~~~~~~p~p~~~p~~g~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~ 112 (200)
.+.+..++.+.||||+++|++||++.+..+++..+.+++++||+++++++++.+.++++||+++++++.++++.|++++.
T Consensus 23 ~~~~~~~~~~~ppgp~~~pl~G~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~~~~ 102 (514)
T PLN03112 23 LNASMRKSLRLPPGPPRWPIVGNLLQLGPLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFASRPR 102 (514)
T ss_pred ccccccCCCCCccCCCCCCeeeeHHhcCCchHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCcccccCCC
Confidence 34445556678999999999999988877789999999999999999999999999999999999999888888888765
Q ss_pred cccccccccCCcceeeccCCcchHHHHhhhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHHHH
Q 044449 113 KDAIFPHQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTSLN 192 (200)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~ 192 (200)
............++++..+|+.|+++|+.+..++|+.++++.+.+.+.++++++++.+.+...+++++|+.+.++.+++|
T Consensus 103 ~~~~~~~~~g~~~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~~~~~~~vd~~~~~~~~~~~ 182 (514)
T PLN03112 103 TLAAVHLAYGCGDVALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEAAQTGKPVNLREVLGAFSMN 182 (514)
T ss_pred cccceeeccCCCceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHhhccCCeeeHHHHHHHHHHH
Confidence 33222111112234455569999999999645799999999999999999999999875444456789999999999999
Q ss_pred HHHHHhcC
Q 044449 193 LLSNTIFS 200 (200)
Q Consensus 193 vi~~~~fG 200 (200)
+++.++||
T Consensus 183 vi~~~~fG 190 (514)
T PLN03112 183 NVTRMLLG 190 (514)
T ss_pred HHHHHHcC
Confidence 99999997
No 4
>PLN02971 tryptophan N-hydroxylase
Probab=99.96 E-value=4e-28 Score=192.47 Aligned_cols=167 Identities=21% Similarity=0.342 Sum_probs=133.7
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCC-C-chHHHHHHHHHhC-CeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCC
Q 044449 34 SFSRGRKKPLPPGPTPYPVIGNLLELGE-K-PHKSLAELAKIYG-PILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNR 110 (200)
Q Consensus 34 ~~~~~~~~~~~p~p~~~p~~g~~~~~~~-~-~~~~~~~~~~~yG-~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~ 110 (200)
..+..++.+.||||+++|++|+++.+.. . .+.++.++.++|| +++++++|+.++|+++||+++++++.+++..|+++
T Consensus 49 ~~~~~r~~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~r 128 (543)
T PLN02971 49 SSRNKKLHPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASR 128 (543)
T ss_pred hcccCCCCCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCC
Confidence 3334455678999999999999988732 2 3678899999999 89999999999999999999999999888889988
Q ss_pred cccccccccccCCcceeeccCCcchHHHHhhhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHH
Q 044449 111 MVKDAIFPHQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTS 190 (200)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~ 190 (200)
+.......++....++++..+|+.|+++|++++++.+++...+.+.+.++++++.+++.+.+...+++++|+.+.+++++
T Consensus 129 p~~~~~~~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t 208 (543)
T PLN02971 129 PLTYAQKILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYNMVKNSEPVDLRFVTRHYC 208 (543)
T ss_pred CcccchhhccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHH
Confidence 75443333322223356666799999999999545677766777888888888888888865444566799999999999
Q ss_pred HHHHHHHhcC
Q 044449 191 LNLLSNTIFS 200 (200)
Q Consensus 191 ~~vi~~~~fG 200 (200)
+|++++++||
T Consensus 209 ~~vi~~~~fG 218 (543)
T PLN02971 209 GNAIKRLMFG 218 (543)
T ss_pred HHHHHHHHhC
Confidence 9999999998
No 5
>PTZ00404 cytochrome P450; Provisional
Probab=99.96 E-value=1.6e-28 Score=192.66 Aligned_cols=160 Identities=23% Similarity=0.371 Sum_probs=136.5
Q ss_pred CCCCCCCCCCCCccccccccccCCCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCccccccc
Q 044449 38 GRKKPLPPGPTPYPVIGNLLELGEKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKDAIF 117 (200)
Q Consensus 38 ~~~~~~~p~p~~~p~~g~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~~~~~~ 117 (200)
+.+...+|||+++|++|+++.+..+++..+.+++++||+++++++|++++|+++||+++++++.++...|.+++......
T Consensus 25 ~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~ 104 (482)
T PTZ00404 25 KIHKNELKGPIPIPILGNLHQLGNLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSIK 104 (482)
T ss_pred hccCCCCCCCCCCCeeccHhhhcccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcceee
Confidence 34567889999999999998887788999999999999999999999999999999999999987766777665433221
Q ss_pred ccccCCcceeeccCCcchHHHHhhhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHHHHHHHHH
Q 044449 118 PHQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTSLNLLSNT 197 (200)
Q Consensus 118 ~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~ 197 (200)
.. ..+.+++.. +|+.|+++|+++ .++|+.++++.+.+.+.+.++++++.|.+..+.++.+|+.+.+.++++|+++++
T Consensus 105 ~~-~~~~~l~~~-~g~~w~~~Rk~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~ 181 (482)
T PTZ00404 105 HG-TFYHGIVTS-SGEYWKRNREIV-GKAMRKTNLKHIYDLLDDQVDVLIESMKKIESSGETFEPRYYLTKFTMSAMFKY 181 (482)
T ss_pred ee-ccCCceecc-ChHHHHHHHHHH-HHHHhhhccccHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHH
Confidence 11 125566555 599999999999 599999999999999999999999999765556677999999999999999999
Q ss_pred hcC
Q 044449 198 IFS 200 (200)
Q Consensus 198 ~fG 200 (200)
+||
T Consensus 182 ~fG 184 (482)
T PTZ00404 182 IFN 184 (482)
T ss_pred Hhc
Confidence 998
No 6
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.96 E-value=4.9e-28 Score=190.64 Aligned_cols=163 Identities=23% Similarity=0.476 Sum_probs=135.8
Q ss_pred CCCCCCCCCCCCccccccccccC-CCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCcccccc
Q 044449 38 GRKKPLPPGPTPYPVIGNLLELG-EKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKDAI 116 (200)
Q Consensus 38 ~~~~~~~p~p~~~p~~g~~~~~~-~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~~~~~ 116 (200)
+++.+.||||+++|++||++.+. .+++.++.+++++||+++++++|+.++++++|||++++++.++...|.+++.....
T Consensus 24 ~~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~~~~ 103 (499)
T PLN03234 24 KKSLRLPPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKGQ 103 (499)
T ss_pred CCCCCCCcCCCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCchhh
Confidence 34457899999999999999884 47888999999999999999999999999999999999999888888887653322
Q ss_pred cccccCCcceeeccCCcchHHHHhhhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHHHHHHHH
Q 044449 117 FPHQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTSLNLLSN 196 (200)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~ 196 (200)
......+..+.+...++.|+++|+.+..++|+++++..+.+.+.++++++++.|.+...+++++|+.+.+..+++|++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~~vd~~~~~~~~t~dvi~~ 183 (499)
T PLN03234 104 QTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQSGTVDLSELLLSFTNCVVCR 183 (499)
T ss_pred hhhccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHhccCCCeEEHHHHHHHHHHHHHHH
Confidence 22121233333445588999999975358999999999999999999999999976555677899999999999999999
Q ss_pred HhcC
Q 044449 197 TIFS 200 (200)
Q Consensus 197 ~~fG 200 (200)
++||
T Consensus 184 ~~fG 187 (499)
T PLN03234 184 QAFG 187 (499)
T ss_pred HHhC
Confidence 9997
No 7
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.96 E-value=6.4e-28 Score=189.76 Aligned_cols=172 Identities=30% Similarity=0.494 Sum_probs=141.5
Q ss_pred HHhhhcCCCCCCCCCCCCCCCccccccccccCCCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCccc
Q 044449 29 VMALSSFSRGRKKPLPPGPTPYPVIGNLLELGEKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFY 108 (200)
Q Consensus 29 ~~~~~~~~~~~~~~~~p~p~~~p~~g~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~ 108 (200)
.++++.....++.+.||||+++|++|+++.+..+++.++.+++++||+++++++|+++.|+++||+++++++.++...|+
T Consensus 18 ~~~~~~~~~~~~~~~pPgp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~ 97 (504)
T PLN00110 18 RFFIRSLLPKPSRKLPPGPRGWPLLGALPLLGNMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFS 97 (504)
T ss_pred HHHHHHHhhcccCCCcccCCCCCeeechhhcCCchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhc
Confidence 34455555556668899999999999998876678899999999999999999999999999999999999998877888
Q ss_pred CCcccccccccccCCcceeeccCCcchHHHHhhhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHH
Q 044449 109 NRMVKDAIFPHQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAGKAIDISQVVFN 188 (200)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~ 188 (200)
+++...........+.+.++..+|+.|+++|+.++.++|+.++++.+.+.+.++++++++.+.+...+++++|+.+.+..
T Consensus 98 ~r~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~~~g~~~~~~~~~~~ 177 (504)
T PLN00110 98 NRPPNAGATHLAYGAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLELSQRGEPVVVPEMLTF 177 (504)
T ss_pred CCCCccchhhhccCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHhccCCCcEeHHHHHHH
Confidence 87654322212112334556666999999999995348999999999999999999999999654556778999999999
Q ss_pred HHHHHHHHHhcC
Q 044449 189 TSLNLLSNTIFS 200 (200)
Q Consensus 189 ~~~~vi~~~~fG 200 (200)
+++|+|++++||
T Consensus 178 ~~~~vi~~~~fg 189 (504)
T PLN00110 178 SMANMIGQVILS 189 (504)
T ss_pred HHHHHHHHHHhC
Confidence 999999999997
No 8
>PLN02183 ferulate 5-hydroxylase
Probab=99.96 E-value=6.7e-28 Score=190.39 Aligned_cols=160 Identities=31% Similarity=0.592 Sum_probs=130.9
Q ss_pred CCCCCCCCCCCCccccccccccCCCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCccccccc
Q 044449 38 GRKKPLPPGPTPYPVIGNLLELGEKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKDAIF 117 (200)
Q Consensus 38 ~~~~~~~p~p~~~p~~g~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~~~~~~ 117 (200)
.++.+.||||+++|++|+++.+....+..+.+++++||++|++++++.++++++||+++++++.+++..|++++......
T Consensus 32 ~~~~~~ppgp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~ 111 (516)
T PLN02183 32 RRRLPYPPGPKGLPIIGNMLMMDQLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANIAIS 111 (516)
T ss_pred cCCCCCCcCCCCCCeeccHHhcCCcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCcccchh
Confidence 33457899999999999998876567788999999999999999999999999999999999998877888776543332
Q ss_pred ccccCCcceeeccCCcchHHHHhhhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHHHHHHHHH
Q 044449 118 PHQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTSLNLLSNT 197 (200)
Q Consensus 118 ~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~ 197 (200)
.....+.+.++..+|+.|+++|+++..++|+.++++.+.+. .++++.++++|.+ ..++++|+.+.+..+++|+++++
T Consensus 112 ~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~-~~~~~~~~~~l~~--~~~~~v~~~~~~~~~~~~vi~~~ 188 (516)
T PLN02183 112 YLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWASV-RDEVDSMVRSVSS--NIGKPVNIGELIFTLTRNITYRA 188 (516)
T ss_pred ccccCCCceEeCCCChHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHh--cCCCcEeHHHHHHHHHHHHHHhH
Confidence 22222234556666999999999843599999999888775 4678999999963 34678999999999999999999
Q ss_pred hcC
Q 044449 198 IFS 200 (200)
Q Consensus 198 ~fG 200 (200)
+||
T Consensus 189 ~fG 191 (516)
T PLN02183 189 AFG 191 (516)
T ss_pred hhc
Confidence 998
No 9
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=1.9e-27 Score=182.36 Aligned_cols=158 Identities=22% Similarity=0.349 Sum_probs=128.4
Q ss_pred CCCCCCCCCcccccccccc--CCCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCcccccccc
Q 044449 41 KPLPPGPTPYPVIGNLLEL--GEKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKDAIFP 118 (200)
Q Consensus 41 ~~~~p~p~~~p~~g~~~~~--~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~~~~~~~ 118 (200)
.+.+|+|++.|++||+..+ .+.......+...++|++++++.+-+|.++|.|||++++|+.+++++|+++. ......
T Consensus 30 rrGi~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I~ik~F~~F~~r~-~~~~~d 108 (499)
T KOG0158|consen 30 RRGIPGPKPLPFLGNLPGMLKRERPGDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEILIKDFDNFYNRK-RPIYGD 108 (499)
T ss_pred cCCCCCCCCCCcEecHHHHHhccCcHHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHHHHHhCccCcCCC-CCCcCC
Confidence 3588999999999999988 2333555555555559999999999999999999999999999999999954 111111
Q ss_pred cc-cCCcceeeccCCcchHHHHhhhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHHHHHHHHH
Q 044449 119 HQ-HNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTSLNLLSNT 197 (200)
Q Consensus 119 ~~-~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~ 197 (200)
.. ......++..+|+.||++|..+ +|.|++.+++.|.+.|+++++++++.+++....+..+++.+.+.++|.|||+++
T Consensus 109 ~~~~l~~~~Lf~~~g~~WK~lR~~l-sP~Fts~kmk~m~~t~~~~~~~l~~~l~~~~~~~~~~~~~dl~~~yT~DVI~~~ 187 (499)
T KOG0158|consen 109 PEDPLSALNLFFLRGERWKRLRTKL-SPTFTSGKLKKMFPTMEEVGDELVRHLRRKSEGGQEGEIKDLCARYTTDVIGSC 187 (499)
T ss_pred CCCcccccCchhccCchHHHHHHhh-ccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHhHh
Confidence 11 2233445555699999999999 799999999999999999999999999765444467999999999999999999
Q ss_pred hcC
Q 044449 198 IFS 200 (200)
Q Consensus 198 ~fG 200 (200)
+||
T Consensus 188 AfG 190 (499)
T KOG0158|consen 188 AFG 190 (499)
T ss_pred hcc
Confidence 998
No 10
>PLN00168 Cytochrome P450; Provisional
Probab=99.96 E-value=4.2e-27 Score=185.98 Aligned_cols=162 Identities=20% Similarity=0.311 Sum_probs=132.8
Q ss_pred CCCCCCCCCCCCCccccccccccC---CCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCccc
Q 044449 37 RGRKKPLPPGPTPYPVIGNLLELG---EKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVK 113 (200)
Q Consensus 37 ~~~~~~~~p~p~~~p~~g~~~~~~---~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~~ 113 (200)
.++..+.||||+++|++|+++.+. .+++..+.+++++||++|++++|+.+.++++||+++++++.+++..|++++..
T Consensus 30 ~~~~~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~ 109 (519)
T PLN00168 30 GKKGRRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAV 109 (519)
T ss_pred CCCCCCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCcc
Confidence 344556789999999999987652 35778899999999999999999999999999999999999888888887654
Q ss_pred ccccccccCCcceee-ccCCcchHHHHh-hhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHHH
Q 044449 114 DAIFPHQHNEFGMVL-LPVSTTWKNLRK-LCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTSL 191 (200)
Q Consensus 114 ~~~~~~~~~~~~~~~-~~~g~~w~~~R~-~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~ 191 (200)
......+ .+.+++. ..+|+.|+++|| ++ +|+|+.++++.+.+.+.+++++++++|.+....++.+|+.+.++.++.
T Consensus 110 ~~~~~~~-~~~~~~~~~~~G~~Wk~~Rr~~~-~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~ 187 (519)
T PLN00168 110 ASSRLLG-ESDNTITRSSYGPVWRLLRRNLV-AETLHPSRVRLFAPARAWVRRVLVDKLRREAEDAAAPRVVETFQYAMF 187 (519)
T ss_pred cchhhhc-cCCCceeCCCCCHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 3222222 1223333 356999999987 56 699999999999999999999999999754444556899999999999
Q ss_pred HHHHHHhcC
Q 044449 192 NLLSNTIFS 200 (200)
Q Consensus 192 ~vi~~~~fG 200 (200)
++++.++||
T Consensus 188 ~ii~~~~fG 196 (519)
T PLN00168 188 CLLVLMCFG 196 (519)
T ss_pred HHHHHHHcC
Confidence 999999998
No 11
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.96 E-value=3.4e-27 Score=186.06 Aligned_cols=164 Identities=27% Similarity=0.469 Sum_probs=135.0
Q ss_pred CCCCCCCCCCCCCccccccccccCCC-chHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCccccc
Q 044449 37 RGRKKPLPPGPTPYPVIGNLLELGEK-PHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKDA 115 (200)
Q Consensus 37 ~~~~~~~~p~p~~~p~~g~~~~~~~~-~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~~~~ 115 (200)
.+++.+.||||+++|++|+++.+..+ .+..+.+++++||+++++++|+++.|+++||+.+++++.+++..|.+++....
T Consensus 25 ~~~~~~~pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~~ 104 (503)
T PLN02394 25 RGKKLKLPPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVV 104 (503)
T ss_pred hcCcCCCCcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcch
Confidence 44557889999999999999888544 57899999999999999999999999999999999999887777877654333
Q ss_pred ccccccCCcceeeccCCcchHHHHhhhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhh-CCCceeHHHHHHHHHHHHH
Q 044449 116 IFPHQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCR-AGKAIDISQVVFNTSLNLL 194 (200)
Q Consensus 116 ~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~d~~~~~~~~~~~vi 194 (200)
.....+.+.+.++..+|+.|+++|+.+..|+|++++++.+.+.+++++++++++|.+... .++.+|+.+.++.+++|++
T Consensus 105 ~~~~~g~~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v~~lv~~l~~~~~~~~~~v~~~~~~~~~~~dvi 184 (503)
T PLN02394 105 FDIFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEADLVVEDVRANPEAATEGVVIRRRLQLMMYNIM 184 (503)
T ss_pred HhHhccCCCceeecCCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHHHHHHHHHHHhhhccCCcEecHHHHHHHHHHHH
Confidence 333322344556666799999999998448999999999999999999999999964322 2456999999999999999
Q ss_pred HHHhcC
Q 044449 195 SNTIFS 200 (200)
Q Consensus 195 ~~~~fG 200 (200)
++++||
T Consensus 185 ~~~~fG 190 (503)
T PLN02394 185 YRMMFD 190 (503)
T ss_pred HHHHhC
Confidence 999998
No 12
>PLN02966 cytochrome P450 83A1
Probab=99.96 E-value=2.2e-27 Score=186.89 Aligned_cols=167 Identities=29% Similarity=0.516 Sum_probs=136.4
Q ss_pred hcCCCCCCCCCCCCCCCcccccccccc-CCCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCc
Q 044449 33 SSFSRGRKKPLPPGPTPYPVIGNLLEL-GEKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRM 111 (200)
Q Consensus 33 ~~~~~~~~~~~~p~p~~~p~~g~~~~~-~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~ 111 (200)
+.....+..+.||||+++|++|+++.+ ..+++..+.+++++||+++++++++.++++++||+++++++.+++..|.+++
T Consensus 20 ~~~~~~~~~~~ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~ 99 (502)
T PLN02966 20 YQKPKTKRYKLPPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRP 99 (502)
T ss_pred HhccccCCCCCCcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCC
Confidence 333444445789999999999999888 4568899999999999999999999999999999999999988777777665
Q ss_pred ccccccccccCCcceeeccCCcchHHHHhh-hhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHH
Q 044449 112 VKDAIFPHQHNEFGMVLLPVSTTWKNLRKL-CNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTS 190 (200)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~-~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~ 190 (200)
.............++.+..+|+.|+++|+. + .++|+.++++.+.+.+.+++++++++|.+....++.+|+.+.++.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~t 178 (502)
T PLN02966 100 PHRGHEFISYGRRDMALNHYTPYYREIRKMGM-NHLFSPTRVATFKHVREEEARRMMDKINKAADKSEVVDISELMLTFT 178 (502)
T ss_pred CCccceeeccCcceeeeCCCCHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeHHHHHHHHH
Confidence 332222221122334445569999999998 6 69999999999999999999999999976555567899999999999
Q ss_pred HHHHHHHhcC
Q 044449 191 LNLLSNTIFS 200 (200)
Q Consensus 191 ~~vi~~~~fG 200 (200)
+|+|+.++||
T Consensus 179 ~dvi~~~~fG 188 (502)
T PLN02966 179 NSVVCRQAFG 188 (502)
T ss_pred HHHHHHHHhC
Confidence 9999999998
No 13
>PLN02290 cytokinin trans-hydroxylase
Probab=99.95 E-value=4.8e-27 Score=185.69 Aligned_cols=158 Identities=16% Similarity=0.292 Sum_probs=126.2
Q ss_pred CCCCCCCCCCccccccccccC-------------------CCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHH
Q 044449 40 KKPLPPGPTPYPVIGNLLELG-------------------EKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYIL 100 (200)
Q Consensus 40 ~~~~~p~p~~~p~~g~~~~~~-------------------~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il 100 (200)
..+.||||+++|++||++.+. .+....+.+++++||+++++++|+.+.++++||+++++++
T Consensus 40 ~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il 119 (516)
T PLN02290 40 ERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKELL 119 (516)
T ss_pred HHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHHHH
Confidence 346799999999999998763 2233457889999999999999999999999999999999
Q ss_pred HhCCCcccCCcccccccccccCCcceeeccCCcchHHHHhhhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhhCC-Cc
Q 044449 101 QDHDSSFYNRMVKDAIFPHQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAG-KA 179 (200)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 179 (200)
.++. .+..++...........+.++++. +|+.|+++|+++ .+.|+.++++.+.+.+.++++++++.|.+..+.+ .+
T Consensus 120 ~~~~-~~~~r~~~~~~~~~~~~g~~l~~~-~g~~Wk~~Rk~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~ 196 (516)
T PLN02290 120 TKYN-TVTGKSWLQQQGTKHFIGRGLLMA-NGADWYHQRHIA-APAFMGDRLKGYAGHMVECTKQMLQSLQKAVESGQTE 196 (516)
T ss_pred hcCC-CCCCCcchhhhHHHHHhcCCcccc-CchHHHHHHhhc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 8763 344444321111111125566555 499999999999 5999999999999999999999999997544333 57
Q ss_pred eeHHHHHHHHHHHHHHHHhcC
Q 044449 180 IDISQVVFNTSLNLLSNTIFS 200 (200)
Q Consensus 180 ~d~~~~~~~~~~~vi~~~~fG 200 (200)
+|+.+.++.+++|++++++||
T Consensus 197 vd~~~~~~~~~~~vi~~~~fG 217 (516)
T PLN02290 197 VEIGEYMTRLTADIISRTEFD 217 (516)
T ss_pred EEhHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999998
No 14
>PLN02500 cytochrome P450 90B1
Probab=99.94 E-value=2.3e-26 Score=180.78 Aligned_cols=160 Identities=18% Similarity=0.281 Sum_probs=125.6
Q ss_pred hcCCCCCCCCCCCCCCCcccccccccc-C----CCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcc
Q 044449 33 SSFSRGRKKPLPPGPTPYPVIGNLLEL-G----EKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSF 107 (200)
Q Consensus 33 ~~~~~~~~~~~~p~p~~~p~~g~~~~~-~----~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~ 107 (200)
++....++.+.||||+++|++||++.+ . +.++.++.+++++||+++++++|++++|+++||+++++++.+++..|
T Consensus 29 ~~~~~~~~~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f 108 (490)
T PLN02500 29 KRRPKQKRFNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLF 108 (490)
T ss_pred ccccccCCCCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeE
Confidence 333344556789999999999998654 1 35667889999999999999999999999999999999998877777
Q ss_pred cCCcccccccccccCCcceeeccCCcchHHHHhhhhhcccchhhHhh-hHHHHHHHHHHHHHHHHHHhhCCCceeHHHHH
Q 044449 108 YNRMVKDAIFPHQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDA-NQELRRKKIKNLLSYVEENCRAGKAIDISQVV 186 (200)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~ 186 (200)
+++.........+ +.++++. +|+.||++|+++ .+.|++.+++. +.+.+.+.+..+++.|. .+..+|+.+.+
T Consensus 109 ~~~~~~~~~~~~g--~~~~~~~-~g~~wr~~Rk~~-~~~f~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~vd~~~~~ 180 (490)
T PLN02500 109 ECSYPRSIGGILG--KWSMLVL-VGDMHRDMRSIS-LNFLSHARLRTHLLKEVERHTLLVLDSWK----ENSTFSAQDEA 180 (490)
T ss_pred EeeCchHHHHHhC--ccccccc-CCHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHhC----CCCCEEehHHH
Confidence 5442211111121 2355555 599999999999 59999999887 56777777788887775 34579999999
Q ss_pred HHHHHHHHHHHhcC
Q 044449 187 FNTSLNLLSNTIFS 200 (200)
Q Consensus 187 ~~~~~~vi~~~~fG 200 (200)
+.+++|++++++||
T Consensus 181 ~~~~~~vi~~~~fg 194 (490)
T PLN02500 181 KKFTFNLMAKHIMS 194 (490)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999997
No 15
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.94 E-value=5.7e-26 Score=177.28 Aligned_cols=158 Identities=23% Similarity=0.296 Sum_probs=127.9
Q ss_pred cCCCCCCCCCCCCCCCcccccccccc-CCCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCcc
Q 044449 34 SFSRGRKKPLPPGPTPYPVIGNLLEL-GEKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMV 112 (200)
Q Consensus 34 ~~~~~~~~~~~p~p~~~p~~g~~~~~-~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~ 112 (200)
.....++.+.||||+++|++|+++++ .++++.++.+++++||++++++++++++++++||+++++++.++.+.|. +.
T Consensus 27 ~~~~~~~~~~Ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~--~~ 104 (463)
T PLN02196 27 RRSSSTKLPLPPGTMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLFK--PT 104 (463)
T ss_pred ccCCCCCCCCCCCCCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCccc--cc
Confidence 33344456778899899999998876 6789999999999999999999999999999999999999987766663 22
Q ss_pred cccccccccCCcceeeccCCcchHHHHhhhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHHHH
Q 044449 113 KDAIFPHQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTSLN 192 (200)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~ 192 (200)
.........+..++++. +|+.|+++|++++ +.|++++++.+.+.+.++++++++.|. ++.+|+.+.++.+++|
T Consensus 105 ~~~~~~~~~g~~~l~~~-~g~~w~~~Rk~l~-~~f~~~~l~~~~~~i~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~ 177 (463)
T PLN02196 105 FPASKERMLGKQAIFFH-QGDYHAKLRKLVL-RAFMPDAIRNMVPDIESIAQESLNSWE-----GTQINTYQEMKTYTFN 177 (463)
T ss_pred CchHHHHHcCccccccc-CcHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHcCC-----CCeEEeHHHHHHHHHH
Confidence 11111111112345444 5999999999995 999999999999999999999998884 4579999999999999
Q ss_pred HHHHHhcC
Q 044449 193 LLSNTIFS 200 (200)
Q Consensus 193 vi~~~~fG 200 (200)
+++.++||
T Consensus 178 v~~~~~fG 185 (463)
T PLN02196 178 VALLSIFG 185 (463)
T ss_pred HHHHHHcC
Confidence 99999998
No 16
>PLN02655 ent-kaurene oxidase
Probab=99.94 E-value=1.1e-25 Score=175.87 Aligned_cols=157 Identities=23% Similarity=0.335 Sum_probs=128.8
Q ss_pred CCCCCCccccccccccC-CCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCcccccccccccC
Q 044449 44 PPGPTPYPVIGNLLELG-EKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKDAIFPHQHN 122 (200)
Q Consensus 44 ~p~p~~~p~~g~~~~~~-~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~ 122 (200)
||||+++|++||++++. .+++..+.+++++||++|++++++.++++++||+++++++.++...|++++.......+...
T Consensus 1 ppgp~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~~ 80 (466)
T PLN02655 1 VPAVPGLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTRD 80 (466)
T ss_pred CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhcC
Confidence 68999999999999884 56899999999999999999999999999999999999999888888887643332223222
Q ss_pred CcceeeccCCcchHHHHhhhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhh--CCCceeHHHHHHHHHHHHHHHHhcC
Q 044449 123 EFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCR--AGKAIDISQVVFNTSLNLLSNTIFS 200 (200)
Q Consensus 123 ~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~--~~~~~d~~~~~~~~~~~vi~~~~fG 200 (200)
+..+.+.++|+.|+++|+.+..++|+...++.+.+.+.+.++.+++.+.+... +++++|+.+.++.+++|+++.++||
T Consensus 81 ~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG 160 (466)
T PLN02655 81 KSMVATSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLIQALG 160 (466)
T ss_pred CCceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHHHHhc
Confidence 23344445699999999877557788888888888888888888888854322 4567999999999999999999998
No 17
>PLN03018 homomethionine N-hydroxylase
Probab=99.93 E-value=4.2e-24 Score=168.96 Aligned_cols=160 Identities=19% Similarity=0.323 Sum_probs=123.8
Q ss_pred CCCCCCCCCCccccccccccC-CCch-HHHHHHHHHh-CCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCcccccc
Q 044449 40 KKPLPPGPTPYPVIGNLLELG-EKPH-KSLAELAKIY-GPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKDAI 116 (200)
Q Consensus 40 ~~~~~p~p~~~p~~g~~~~~~-~~~~-~~~~~~~~~y-G~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~~~~~ 116 (200)
+.+.||||+++|++|+++++. .++. .++.+..++| |+++++++|++++|+++||+++++++.+++..|++++.....
T Consensus 38 ~~~~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~ 117 (534)
T PLN03018 38 SRQLPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIM 117 (534)
T ss_pred CCCCCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhh
Confidence 345789999999999999873 2332 4566666766 799999999999999999999999999888889888754443
Q ss_pred cccccCCcceeeccCCcchHHHHhhhhhcccchhhHhh-hHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHHHHHHH
Q 044449 117 FPHQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDA-NQELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTSLNLLS 195 (200)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~ 195 (200)
..+...+.++.+..+|+.|+++|+++ ++.|...+..+ +...++++++++++.+.+...+++++|+.+.++.+++|+++
T Consensus 118 ~~l~~~~~~i~~~~~G~~Wk~~Rk~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~ 196 (534)
T PLN03018 118 ETIGDNYKSMGTSPYGEQFMKMKKVI-TTEIMSVKTLNMLEAARTIEADNLIAYIHSMYQRSETVDVRELSRVYGYAVTM 196 (534)
T ss_pred hhhccCCCceEecCCCHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeHHHHHHHHHHHHHH
Confidence 33332233566666699999999999 48765544444 44555567889999997544455679999999999999999
Q ss_pred HHhcC
Q 044449 196 NTIFS 200 (200)
Q Consensus 196 ~~~fG 200 (200)
+++||
T Consensus 197 ~~~fG 201 (534)
T PLN03018 197 RMLFG 201 (534)
T ss_pred HHHhC
Confidence 99998
No 18
>PLN02774 brassinosteroid-6-oxidase
Probab=99.92 E-value=7.7e-25 Score=170.99 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=124.3
Q ss_pred CCCCCCCCCCCccccccccccCCCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCcccccccc
Q 044449 39 RKKPLPPGPTPYPVIGNLLELGEKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKDAIFP 118 (200)
Q Consensus 39 ~~~~~~p~p~~~p~~g~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~~~~~~~ 118 (200)
++.+.||||+++|++|+++.+.+++..++.+++++||+++++++|++++++++||+++++++.++...|..+........
T Consensus 28 ~r~~~ppgp~~~P~~G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~ 107 (463)
T PLN02774 28 SKKGLPPGTMGWPLFGETTEFLKQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSMLDI 107 (463)
T ss_pred CCCCCCCCCCCCCchhhHHHHHHhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHHHH
Confidence 33467889999999999988766778899999999999999999999999999999999999877766644322111111
Q ss_pred cccCCcceeeccCCcchHHHHhhhhhcccchhhHhh-hHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHHHHHHHHH
Q 044449 119 HQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDA-NQELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTSLNLLSNT 197 (200)
Q Consensus 119 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~ 197 (200)
++ +.+++. .+|+.|+++|+++ .++|+++.++. +.+.+.+.+++++++|. .++++|+.+.++.+++++++++
T Consensus 108 lg--~~~~~~-~~g~~w~~~R~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~ 179 (463)
T PLN02774 108 LG--TCNIAA-VHGSTHRYMRGSL-LSLISPTMIRDHLLPKIDEFMRSHLSGWD----GLKTIDIQEKTKEMALLSALKQ 179 (463)
T ss_pred hC--ccchhh-cCCHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHhhC----CCCCEEeeHHHHHHHHHHHHHH
Confidence 21 234444 4599999999999 59999998875 68888888888888885 3457999999999999999999
Q ss_pred hcC
Q 044449 198 IFS 200 (200)
Q Consensus 198 ~fG 200 (200)
+||
T Consensus 180 ~~g 182 (463)
T PLN02774 180 IAG 182 (463)
T ss_pred HcC
Confidence 987
No 19
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.92 E-value=1.1e-23 Score=165.68 Aligned_cols=154 Identities=20% Similarity=0.275 Sum_probs=123.4
Q ss_pred CCCCCCCCCCCCcccccccccc-----CCCchHHHHHHHHHhCC--eEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCC
Q 044449 38 GRKKPLPPGPTPYPVIGNLLEL-----GEKPHKSLAELAKIYGP--ILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNR 110 (200)
Q Consensus 38 ~~~~~~~p~p~~~p~~g~~~~~-----~~~~~~~~~~~~~~yG~--v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~ 110 (200)
..+.+.||||+++|++|+++.+ ..++++++.+++++||+ ++++++++++.++++||+++++++.++ ..|.++
T Consensus 38 ~~~~~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~~ 116 (490)
T PLN02302 38 EGQPPLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEPG 116 (490)
T ss_pred cCCCCCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-CccccC
Confidence 3344678999999999998876 34788899999999997 799999999999999999999999865 455543
Q ss_pred cccccccccccCCcceeeccCCcchHHHHhhhhhcccc-hhhHhhhHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHH
Q 044449 111 MVKDAIFPHQHNEFGMVLLPVSTTWKNLRKLCNLHIFT-TQKLDANQELRRKKIKNLLSYVEENCRAGKAIDISQVVFNT 189 (200)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~-~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~ 189 (200)
......... +.+.+...+|+.|+++|+.+ .+.|+ .++++.+.+.+.++++++++++. ++..+|+.+.++.+
T Consensus 117 ~~~~~~~~~---g~~~~~~~~g~~w~~~R~~~-~~~f~~~~~l~~~~~~i~~~v~~~~~~~~----~~~~v~~~~~~~~~ 188 (490)
T PLN02302 117 WPESTVELI---GRKSFVGITGEEHKRLRRLT-AAPVNGPEALSTYIPYIEENVKSCLEKWS----KMGEIEFLTELRKL 188 (490)
T ss_pred CchhHHHHh---ccccccccCcHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHHHHHHHHhc----CCCCEehHHHHHHH
Confidence 221111111 33333444599999999999 58885 67899999999999999999885 23469999999999
Q ss_pred HHHHHHHHhcC
Q 044449 190 SLNLLSNTIFS 200 (200)
Q Consensus 190 ~~~vi~~~~fG 200 (200)
+++++++++||
T Consensus 189 ~~~vi~~~~~G 199 (490)
T PLN02302 189 TFKIIMYIFLS 199 (490)
T ss_pred HHHHHHHHHcC
Confidence 99999999997
No 20
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.91 E-value=2.2e-23 Score=164.88 Aligned_cols=154 Identities=16% Similarity=0.222 Sum_probs=119.6
Q ss_pred CCCCCCCCccccccccccCCCchHHHHHHHHHh---CCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCcccc-ccc
Q 044449 42 PLPPGPTPYPVIGNLLELGEKPHKSLAELAKIY---GPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKD-AIF 117 (200)
Q Consensus 42 ~~~p~p~~~p~~g~~~~~~~~~~~~~~~~~~~y---G~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~~~-~~~ 117 (200)
+.+|||+++|++|+++.+..+ +..+.++.++| |+++++++|+.+.++++||+++++|+.++...|.++.... ...
T Consensus 30 ~~~pgp~~~p~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~ 108 (516)
T PLN03195 30 RNRKGPKSWPIIGAALEQLKN-YDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYME 108 (516)
T ss_pred cccCCCCCCCeecchHHHHhc-cchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHHH
Confidence 347999999999998765332 34566777777 8999999999999999999999999987655666553211 111
Q ss_pred ccccCCcceeeccCCcchHHHHhhhhhcccchhhHhhhHHHH-HHHHHHHHHHHHHHhhCCCceeHHHHHHHHHHHHHHH
Q 044449 118 PHQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELR-RKKIKNLLSYVEENCRAGKAIDISQVVFNTSLNLLSN 196 (200)
Q Consensus 118 ~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~ 196 (200)
.. .+.+++. .+|+.|+++|+++ +++|+.++++.+.+.+ .+.++.+.+.+++...+++++|+.+.++.+++|+++.
T Consensus 109 ~~--~g~~l~~-~~g~~w~~~Rr~l-~~~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~ 184 (516)
T PLN03195 109 VL--LGDGIFN-VDGELWRKQRKTA-SFEFASKNLRDFSTVVFREYSLKLSSILSQASFANQVVDMQDLFMRMTLDSICK 184 (516)
T ss_pred HH--hcCeeec-cCcHHHHHHHHhc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEcHHHHHHHHHHHHHHH
Confidence 11 2456555 4599999999999 5999999999998876 5556777777764334566899999999999999999
Q ss_pred HhcC
Q 044449 197 TIFS 200 (200)
Q Consensus 197 ~~fG 200 (200)
++||
T Consensus 185 ~~fG 188 (516)
T PLN03195 185 VGFG 188 (516)
T ss_pred HHhC
Confidence 9998
No 21
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.91 E-value=2.3e-24 Score=167.59 Aligned_cols=154 Identities=26% Similarity=0.468 Sum_probs=130.6
Q ss_pred CCCCCCccccccccccC--CCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCcccccccc--c
Q 044449 44 PPGPTPYPVIGNLLELG--EKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKDAIFP--H 119 (200)
Q Consensus 44 ~p~p~~~p~~g~~~~~~--~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~~~~~~~--~ 119 (200)
||||+++|++|+++.+. ++++..+.+++++||+||+++++++++++++||+++++++.++...++.++....... .
T Consensus 1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~ 80 (463)
T PF00067_consen 1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRG 80 (463)
T ss_dssp SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHH
T ss_pred CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccccccc
Confidence 79999999999999995 6788999999999999999999999999999999999999988767766533222211 1
Q ss_pred ccCCcceeeccCCcchHHHHhhhhhcccchh-hHhhhHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHHHHHHHHHh
Q 044449 120 QHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQ-KLDANQELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTSLNLLSNTI 198 (200)
Q Consensus 120 ~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~-~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~ 198 (200)
...+.++++.+ |+.|+.+|+.+ .+.|+.. .+ .+.+.+.+.++++++.|.+....++++|+.+.++.+++|++++++
T Consensus 81 ~~~~~~l~~~~-~~~~~~~R~~~-~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d~i~~~~ 157 (463)
T PF00067_consen 81 PFGGKGLFFSD-GERWRRQRRLL-APAFSSKKIL-KLEPLIDEEAEELIDQLRKKAGSSGPVDLFDWLRRFALDVIGRVL 157 (463)
T ss_dssp HHTTTSSTTSS-HHHHHHHHHHH-HHHHSHHHHH-HHHHHHHHHHHHHHHHHHHTTTSESEEEHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccc-ccccccccccc-cccccccccc-ccccccccccccccccccccccccceeeeeccccccccccccccc
Confidence 22366666665 89999999999 5999988 66 889999999999999998766566689999999999999999999
Q ss_pred cC
Q 044449 199 FS 200 (200)
Q Consensus 199 fG 200 (200)
||
T Consensus 158 fG 159 (463)
T PF00067_consen 158 FG 159 (463)
T ss_dssp HS
T ss_pred cc
Confidence 98
No 22
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.91 E-value=1.2e-23 Score=164.93 Aligned_cols=156 Identities=28% Similarity=0.432 Sum_probs=128.9
Q ss_pred CCCCCCCCCCccccccccccC---CCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCcccc-c
Q 044449 40 KKPLPPGPTPYPVIGNLLELG---EKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKD-A 115 (200)
Q Consensus 40 ~~~~~p~p~~~p~~g~~~~~~---~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~~~-~ 115 (200)
....+|||.++|++|++..+. .+...++.++..+||++++.|+||.+.++++||+.+++|+.++...+.+.+... .
T Consensus 33 ~~~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~ 112 (497)
T KOG0157|consen 33 KKKLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPES 112 (497)
T ss_pred HhccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHH
Confidence 456789999999999999883 356778899999999999999999999999999999999975555555443322 2
Q ss_pred ccccccCCcceeeccCCcchHHHHhhhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHHHHHHH
Q 044449 116 IFPHQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTSLNLLS 195 (200)
Q Consensus 116 ~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~ 195 (200)
.... .|.|+++.+ |+.|+++|+++ .|+|+.+.++.+...+.+.+..+...+.... .++.+|++++++++|+|+||
T Consensus 113 ~~~~--lG~gll~~~-g~~W~~~Rk~~-~~~f~~~~L~~~~~~~~~~~~~~~~~~~~~~-~~~~vd~~~~~~~~tld~i~ 187 (497)
T KOG0157|consen 113 LKPW--LGDGLLFSD-GEKWHKHRKLL-TPAFHFEILKSFVPVFIESSLILLLLLELAA-SGEEVDLQDLLKRLTLDIIC 187 (497)
T ss_pred HHHH--hcCccccCC-chHHHHHHhhc-cHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCeEcHHHHHHHHHHHHHH
Confidence 2222 267888888 99999999999 5999999999999999999888888775422 23339999999999999999
Q ss_pred HHhcC
Q 044449 196 NTIFS 200 (200)
Q Consensus 196 ~~~fG 200 (200)
+++||
T Consensus 188 ~~~~G 192 (497)
T KOG0157|consen 188 KTAMG 192 (497)
T ss_pred HHhcC
Confidence 99998
No 23
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.91 E-value=1.5e-23 Score=163.39 Aligned_cols=154 Identities=18% Similarity=0.317 Sum_probs=120.9
Q ss_pred CCCCCCCCCCCcccccccccc-----CCCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCccc
Q 044449 39 RKKPLPPGPTPYPVIGNLLEL-----GEKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVK 113 (200)
Q Consensus 39 ~~~~~~p~p~~~p~~g~~~~~-----~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~~ 113 (200)
++.+.||||.++|++|+++.+ ..+++.++.+++++||+||++++|+.+.++++||+++++++.+++..|+.+...
T Consensus 4 ~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~~~ 83 (452)
T PLN03141 4 KKSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAYPK 83 (452)
T ss_pred CCCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccCch
Confidence 455678899999999999887 246889999999999999999999999999999999999999887777654321
Q ss_pred ccccccccCCcceeeccCCcchHHHHhhhhhcccchhhHhhh-HHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHHHH
Q 044449 114 DAIFPHQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDAN-QELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTSLN 192 (200)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~-~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~ 192 (200)
...... +..++++. +|+.|+++|+++ .+.|+..++... .+.+.+.++++++.|. +++.+|+.+.+..++++
T Consensus 84 -~~~~l~-g~~~~~~~-~g~~wr~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 155 (452)
T PLN03141 84 -SLTELM-GKSSILLI-NGSLQRRVHGLI-GAFLKSPHLKAQITRDMERYVSESLDSWR----DDPPVLVQDETKKIAFE 155 (452)
T ss_pred -hHHHHh-Cccccccc-CcHHHHHHHHHH-HHhcCcHHHHHHHHHHHHHHHHHHHHhcc----CCCCEEhHHHHHHHHHH
Confidence 121122 12345554 599999999999 599988777653 4556666666665553 45679999999999999
Q ss_pred HHHHHhcC
Q 044449 193 LLSNTIFS 200 (200)
Q Consensus 193 vi~~~~fG 200 (200)
++++++||
T Consensus 156 vi~~~~~G 163 (452)
T PLN03141 156 VLVKALIS 163 (452)
T ss_pred HHHHHHcC
Confidence 99999987
No 24
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.91 E-value=2.9e-23 Score=162.12 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=116.0
Q ss_pred hcCCCCCCCCCCCCCCCccccccccccC-----CCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcc
Q 044449 33 SSFSRGRKKPLPPGPTPYPVIGNLLELG-----EKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSF 107 (200)
Q Consensus 33 ~~~~~~~~~~~~p~p~~~p~~g~~~~~~-----~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~ 107 (200)
..+....+.+.||||.++|++|+++.+. .+++.++.+++++||+++++++++++.++++||+++++++.++...|
T Consensus 21 ~~~~~~~~~~lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f 100 (472)
T PLN02987 21 LRRTRYRRMRLPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLF 100 (472)
T ss_pred HHhhccCCCCCcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceE
Confidence 3334455556789999999999998762 46888899999999999999999999999999999999999887777
Q ss_pred cCCcccccccccccCCcceeeccCCcchHHHHhhhhhcccchhhHhhhH-HHHHHHHHHHHHHHHHHhhCCCceeHHHHH
Q 044449 108 YNRMVKDAIFPHQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQ-ELRRKKIKNLLSYVEENCRAGKAIDISQVV 186 (200)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~ 186 (200)
.++........++ +.++++.+ |+.|+++|+++ .+.++.+.++.+. ..+.+.++..++.|. +++|+.+.+
T Consensus 101 ~~~~~~~~~~~lg--~~~l~~~~-g~~wr~~R~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~ 170 (472)
T PLN02987 101 ECSYPGSISNLLG--KHSLLLMK-GNLHKKMHSLT-MSFANSSIIKDHLLLDIDRLIRFNLDSWS------SRVLLMEEA 170 (472)
T ss_pred EecCcHHHHHHhC--cccccccC-cHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHhhc------cceehHHHH
Confidence 6553222222221 34666664 99999999998 4654545555432 123333333344331 369999999
Q ss_pred HHHHHHHHHHHhcC
Q 044449 187 FNTSLNLLSNTIFS 200 (200)
Q Consensus 187 ~~~~~~vi~~~~fG 200 (200)
++++++++++++||
T Consensus 171 ~~~t~~vi~~~~fg 184 (472)
T PLN02987 171 KKITFELTVKQLMS 184 (472)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999987
No 25
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.91 E-value=5.9e-23 Score=161.58 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=119.8
Q ss_pred CCCCCCCCccccccccccCCC---chHHHHHHHHHhCCeEE---EeecCeeEEEeCCHHHHHHHHHhCCCcccCCccccc
Q 044449 42 PLPPGPTPYPVIGNLLELGEK---PHKSLAELAKIYGPILS---LKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKDA 115 (200)
Q Consensus 42 ~~~p~p~~~p~~g~~~~~~~~---~~~~~~~~~~~yG~v~~---~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~~~~ 115 (200)
+..|+|+++|++|++..+..+ .++++.+..++||..++ .++|+.++++++||+++++|+.++...|++++....
T Consensus 31 ~~~p~p~~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~~~~ 110 (500)
T PLN02169 31 HGQPILKNWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPEFKK 110 (500)
T ss_pred CCCCCCCCCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHHHHH
Confidence 468999999999999777322 33444455555886555 677889999999999999999987777777643221
Q ss_pred ccccccCCcceeeccCCcchHHHHhhhhhcccchhhHhhh--HHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHHHHH
Q 044449 116 IFPHQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDAN--QELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTSLNL 193 (200)
Q Consensus 116 ~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~--~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~v 193 (200)
.. ...|.|+++++ |+.|+++|+++ +|+|+.+++..+ ...+.+.++.+++.+++.+.+++++|+.+.+.++++|+
T Consensus 111 ~~--~~~g~gl~~~~-g~~Wr~~Rk~l-~p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~dv 186 (500)
T PLN02169 111 IF--DVLGEGILTVD-FELWEDLRKSN-HALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHENIIIDLQDVFMRFMFDT 186 (500)
T ss_pred HH--HhhcCcccccC-cHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEeHHHHHHHHHHHH
Confidence 11 12367777776 99999999999 599999887643 36677778888888875555667899999999999999
Q ss_pred HHHHhcC
Q 044449 194 LSNTIFS 200 (200)
Q Consensus 194 i~~~~fG 200 (200)
|++++||
T Consensus 187 i~~~~fG 193 (500)
T PLN02169 187 SSILMTG 193 (500)
T ss_pred HHhheeC
Confidence 9999998
No 26
>PLN02936 epsilon-ring hydroxylase
Probab=99.88 E-value=5.4e-22 Score=155.94 Aligned_cols=152 Identities=20% Similarity=0.289 Sum_probs=125.7
Q ss_pred CCCCCcccccccccc-----CCCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCccccccccc
Q 044449 45 PGPTPYPVIGNLLEL-----GEKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKDAIFPH 119 (200)
Q Consensus 45 p~p~~~p~~g~~~~~-----~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~~~~~~~~ 119 (200)
-|-.+||++|..++. .+.++..+.+++++|||++++++|+.+.++++|||++++|+.+.+..|.++.........
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~~~ 94 (489)
T PLN02936 15 GDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVSEFL 94 (489)
T ss_pred CCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhhHHH
Confidence 455679999998877 467889999999999999999999999999999999999998776778776432221112
Q ss_pred ccCCcceeeccCCcchHHHHhhhhhcccchhhHhhhHH-HHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHHHHHHHHHh
Q 044449 120 QHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQE-LRRKKIKNLLSYVEENCRAGKAIDISQVVFNTSLNLLSNTI 198 (200)
Q Consensus 120 ~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~ 198 (200)
.+.++++.+ |+.|+++|+++ .|.|+.+++..+.+ .+.++++++++.|.+...++.++|+.++++.+++|+++.++
T Consensus 95 --~~~~i~~~~-g~~wk~~Rk~l-~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vd~~~~~~~~~~dvi~~~~ 170 (489)
T PLN02936 95 --FGSGFAIAE-GELWTARRRAV-VPSLHRRYLSVMVDRVFCKCAERLVEKLEPVALSGEAVNMEAKFSQLTLDVIGLSV 170 (489)
T ss_pred --hcCccccCC-chHHHHHHHhh-cCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHH
Confidence 245665554 99999999999 59999988888754 78889999999997655556789999999999999999999
Q ss_pred cC
Q 044449 199 FS 200 (200)
Q Consensus 199 fG 200 (200)
||
T Consensus 171 fG 172 (489)
T PLN02936 171 FN 172 (489)
T ss_pred cC
Confidence 98
No 27
>PLN02738 carotene beta-ring hydroxylase
Probab=99.88 E-value=8.2e-22 Score=158.12 Aligned_cols=143 Identities=19% Similarity=0.344 Sum_probs=117.9
Q ss_pred cccccc-CCCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCcccccccccccCCcceeeccCC
Q 044449 54 GNLLEL-GEKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKDAIFPHQHNEFGMVLLPVS 132 (200)
Q Consensus 54 g~~~~~-~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 132 (200)
|++..+ .+..+..+.+++++||||+++++|++++++++||+.+++|+.++...|++++........ .+.++++. +|
T Consensus 143 G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~--~g~~l~~~-dg 219 (633)
T PLN02738 143 GSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFV--MGKGLIPA-DG 219 (633)
T ss_pred CcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhc--cCCceecC-Cc
Confidence 333344 455778899999999999999999999999999999999998776677765432211111 24566555 59
Q ss_pred cchHHHHhhhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHHHHHHHHHhcC
Q 044449 133 TTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTSLNLLSNTIFS 200 (200)
Q Consensus 133 ~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG 200 (200)
+.|+++|+.+ .|+|+.++++.+.+.+.+++++++++|++...+++++|+.+.++.+++|+|+.++||
T Consensus 220 e~wr~rRr~l-~p~Fs~~~v~~l~~~i~~~v~~L~~~L~~~~~~g~~vdl~~~~~~lt~DVI~~~~FG 286 (633)
T PLN02738 220 EIWRVRRRAI-VPALHQKYVAAMISLFGQASDRLCQKLDAAASDGEDVEMESLFSRLTLDIIGKAVFN 286 (633)
T ss_pred HHHHHHHHhc-cHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHHHHhC
Confidence 9999999999 599999999999999999999999999766566788999999999999999999998
No 28
>PLN02648 allene oxide synthase
Probab=99.88 E-value=1.4e-22 Score=157.83 Aligned_cols=155 Identities=9% Similarity=0.084 Sum_probs=123.7
Q ss_pred CCCCCCCCCCcccccccccc-----CCCchHHHHHHHHHhCC-eEEEeecCeeE-------EEeCCHHHHHHHHHh----
Q 044449 40 KKPLPPGPTPYPVIGNLLEL-----GEKPHKSLAELAKIYGP-ILSLKLGEVTT-------VVVSSAPMAKYILQD---- 102 (200)
Q Consensus 40 ~~~~~p~p~~~p~~g~~~~~-----~~~~~~~~~~~~~~yG~-v~~~~~~~~~~-------v~v~~p~~~~~il~~---- 102 (200)
+.+.|||+.++|++|+.+++ ..++..++.+.++|||+ ||++.++|.|+ |+++|||+++.+|.+
T Consensus 15 ~~~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~~ 94 (480)
T PLN02648 15 PLREIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKVD 94 (480)
T ss_pred CCCCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhcc
Confidence 44678999999999999854 46678999999999999 99999998666 999999999999975
Q ss_pred CCCcccCCcccccccccccCCcc---eeeccCCcchHHHHhhhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhhCCCc
Q 044449 103 HDSSFYNRMVKDAIFPHQHNEFG---MVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAGKA 179 (200)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 179 (200)
+...|... +......+ |.+ .++..+|+.|+++|+++ .++|+ .+++.+.+.|.+.++++++.|+.....+.+
T Consensus 95 ~~~~~~~~-~~~~~~l~---G~~~~~s~~~~~g~~H~r~Rrll-~~~f~-~~~~~~~~~m~~~~~~~~~~w~~~~~~~~~ 168 (480)
T PLN02648 95 KRDVFTGT-YMPSTAFT---GGYRVLSYLDPSEPKHAKLKSFL-FELLK-SRHRRFIPEFRAAFAELFDTWEAELAKKGK 168 (480)
T ss_pred ccccceee-eccCcccc---CCceeeeecCCCCchHHHHHHHH-HHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhhCCC
Confidence 43334332 11222222 332 44445699999999999 59999 577889999999999999999643234557
Q ss_pred eeHHHHHHHHHHHHHHHHhcC
Q 044449 180 IDISQVVFNTSLNLLSNTIFS 200 (200)
Q Consensus 180 ~d~~~~~~~~~~~vi~~~~fG 200 (200)
+|+.+.++++++|++++++||
T Consensus 169 vdv~~~~~~lt~~vi~~~lfG 189 (480)
T PLN02648 169 AEFNDPLDQMAFNFLCKALTG 189 (480)
T ss_pred ccccchHHHHHHHHHHHHHcC
Confidence 999999999999999999997
No 29
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=1.6e-19 Score=137.22 Aligned_cols=161 Identities=20% Similarity=0.303 Sum_probs=132.4
Q ss_pred CCCCCCCCCCCCcccccccccc----CCCchHHHHHHHHHhCCeEEEe-ecCeeEEEeCCHHHHHHHHHhCCCcccCCc-
Q 044449 38 GRKKPLPPGPTPYPVIGNLLEL----GEKPHKSLAELAKIYGPILSLK-LGEVTTVVVSSAPMAKYILQDHDSSFYNRM- 111 (200)
Q Consensus 38 ~~~~~~~p~p~~~p~~g~~~~~----~~~~~~~~~~~~~~yG~v~~~~-~~~~~~v~v~~p~~~~~il~~~~~~~~~~~- 111 (200)
.++...+|+|+.+|++|.++.+ ..+.|+.....+++|||||+.. +|+...|.+.+|++++.++++++. ++.|+
T Consensus 46 ~r~~~~IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG~-~P~Rp~ 124 (519)
T KOG0159|consen 46 ARPFEEIPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEGK-YPFRPL 124 (519)
T ss_pred cCChhhcCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCCC-CCCccc
Confidence 3455678999999999998844 4678899999999999999999 788899999999999999997654 56664
Q ss_pred ccccc---cccccCCcceeeccCCcchHHHHhhhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhh---CCCceeHHHH
Q 044449 112 VKDAI---FPHQHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCR---AGKAIDISQV 185 (200)
Q Consensus 112 ~~~~~---~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~---~~~~~d~~~~ 185 (200)
....+ ....+...|++... |+.|.+.|..++...++++++++|.+.+++.++++++.+++..+ ...+.|+.+.
T Consensus 125 ~~~~w~~~rd~~~~~~Gl~~~~-G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~ 203 (519)
T KOG0159|consen 125 LIEPWVAYRDFRGGVCGLFLLE-GPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQE 203 (519)
T ss_pred ccchhhhhHHhhccCCCcccCC-CHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHH
Confidence 22222 22334456676666 99999999999866799999999999999999999999965444 3446799999
Q ss_pred HHHHHHHHHHHHhcC
Q 044449 186 VFNTSLNLLSNTIFS 200 (200)
Q Consensus 186 ~~~~~~~vi~~~~fG 200 (200)
+.+++++.||.++||
T Consensus 204 l~~wslEsi~~V~l~ 218 (519)
T KOG0159|consen 204 LYRWSLESICLVLLG 218 (519)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999987
No 30
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.77 E-value=2.2e-17 Score=130.17 Aligned_cols=145 Identities=10% Similarity=0.106 Sum_probs=110.0
Q ss_pred ccccccccccCCCchHHHHHHHHHhC-CeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCcccc-cccccccCCccee
Q 044449 50 YPVIGNLLELGEKPHKSLAELAKIYG-PILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVKD-AIFPHQHNEFGMV 127 (200)
Q Consensus 50 ~p~~g~~~~~~~~~~~~~~~~~~~yG-~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 127 (200)
.++.|+......+..+++..+.++++ .+++++..+. ++++||+++++++.++...|++..... ..... .|.|++
T Consensus 49 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~--~g~gi~ 124 (502)
T PLN02426 49 AYLTASWAKDFDNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDL--LGRGIF 124 (502)
T ss_pred CCccHHHHHhcccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHh--cCCcee
Confidence 44677776654556777877888887 5778776554 899999999999987766777654221 11112 266776
Q ss_pred eccCCcchHHHHhhhhhcccchhhHhhhH--HHHHHHHHHHHHHHHHHhhC--CCceeHHHHHHHHHHHHHHHHhcC
Q 044449 128 LLPVSTTWKNLRKLCNLHIFTTQKLDANQ--ELRRKKIKNLLSYVEENCRA--GKAIDISQVVFNTSLNLLSNTIFS 200 (200)
Q Consensus 128 ~~~~g~~w~~~R~~~~~~~f~~~~l~~~~--~~~~~~~~~~~~~l~~~~~~--~~~~d~~~~~~~~~~~vi~~~~fG 200 (200)
..+ |+.|+++||.+ ++.|+.++++.+. ..+.+.++.+++.+++..+. +.++|+.+.++++++|+|++++||
T Consensus 125 ~~~-g~~wk~~Rk~l-~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG 199 (502)
T PLN02426 125 NVD-GDSWRFQRKMA-SLELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNICKFSFG 199 (502)
T ss_pred ecC-cHHHHHHHHHh-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHHHHHhC
Confidence 655 99999999999 6999999988763 56777778888888654322 467999999999999999999998
No 31
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.70 E-value=4.7e-16 Score=116.24 Aligned_cols=149 Identities=14% Similarity=0.125 Sum_probs=113.9
Q ss_pred CCCCCCC-CccccccccccCCCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCcccCCccc-cccccc
Q 044449 42 PLPPGPT-PYPVIGNLLELGEKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSSFYNRMVK-DAIFPH 119 (200)
Q Consensus 42 ~~~p~p~-~~p~~g~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~~~~~~~~-~~~~~~ 119 (200)
+.||.-+ ++||+|+.+.++.++.++++++++|||+||++.++|+.+.++.||+....++.++....+..... ......
T Consensus 31 ~~PPli~gwiP~lG~a~~fgk~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~~v 110 (486)
T KOG0684|consen 31 KEPPLIKGWIPWLGSALAFGKDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTTPV 110 (486)
T ss_pred CCCcccccCcchhhHHHHhccCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhhhh
Confidence 4666655 57999999999999999999999999999999999999999999999999997664444332221 122222
Q ss_pred ccCCcceeeccCCcchHHHHhhhhhcccchhhHhhhHHHHHHHHHHHHHH-HHHHhhCCCceeHHHHHHHHHHHHHHH
Q 044449 120 QHNEFGMVLLPVSTTWKNLRKLCNLHIFTTQKLDANQELRRKKIKNLLSY-VEENCRAGKAIDISQVVFNTSLNLLSN 196 (200)
Q Consensus 120 ~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~-l~~~~~~~~~~d~~~~~~~~~~~vi~~ 196 (200)
. |.|+....++....++.+++ ..++...+++++++.|.++.++.++. |. +++++..+.+....+.+.+--.
T Consensus 111 F--g~~v~~d~~~~~~~e~~~~~-k~~L~~~~lk~~~e~m~~el~~~f~~~~~---~s~~~d~l~~~~~~ii~tAs~~ 182 (486)
T KOG0684|consen 111 F--GKGVVYDVPNHVMMEQKKFF-KSALGGVALKSLVELMLEELHAYFETSLG---ESGETDGLYTFCRLIIFTASRL 182 (486)
T ss_pred c--CCCccccCCCchHHHHHHHH-HHHhchhhHHHHHHHHHHHHHHHHhcccc---cccchhHhhhhhHHHhhhhHHH
Confidence 2 66777777788899999999 69999999999999999999998877 43 2444445555555555544333
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.32 E-value=1.7e-11 Score=94.61 Aligned_cols=131 Identities=21% Similarity=0.194 Sum_probs=98.3
Q ss_pred chHHHHHHHHHhCCeEEEeecCee--EEEeCCHHHHHHHHHhCCCcccCCccccccc--ccccCCcceeeccCCcchHHH
Q 044449 63 PHKSLAELAKIYGPILSLKLGEVT--TVVVSSAPMAKYILQDHDSSFYNRMVKDAIF--PHQHNEFGMVLLPVSTTWKNL 138 (200)
Q Consensus 63 ~~~~~~~~~~~yG~v~~~~~~~~~--~v~v~~p~~~~~il~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~w~~~ 138 (200)
+......+.+.||.+..+...++. .+++++++++++++.++. .+++........ .....+.+.+...+|+.|+++
T Consensus 24 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~r~ 102 (411)
T COG2124 24 PRFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLRPVLGDGSLLTLDGPEHTRL 102 (411)
T ss_pred hhhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchhhhccccceeecCCHHHHHH
Confidence 445556677888888888776654 799999999999998653 222221111111 112225553445569999999
Q ss_pred HhhhhhcccchhhHhhhHHHHHHHHHHHHHHHHHHhhCCCceeHHHHHHHHHHHHHHHHhcC
Q 044449 139 RKLCNLHIFTTQKLDANQELRRKKIKNLLSYVEENCRAGKAIDISQVVFNTSLNLLSNTIFS 200 (200)
Q Consensus 139 R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG 200 (200)
|+++ .++|++++++++.+.|.+.++++++.+ + .++.+++.+.+..+++++|+ .+||
T Consensus 103 Rkl~-~~~F~~~~~~~~~~~i~~~~~~~~~~~-~---~~~~~~v~~~a~~l~~~vi~-~l~G 158 (411)
T COG2124 103 RKLL-APAFTPRALRGYRPLIREIADRLLDDL-W---QGGADLVLDFAAELTLRVIA-ELLG 158 (411)
T ss_pred HHHh-ccccCHHHHHHHHHHHHHHHHHHHHhc-c---cCCchhHHHHhhhhhHHHHH-HHhC
Confidence 9999 599999999999999999999999998 2 23678899999999999999 8877
No 33
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=63.12 E-value=22 Score=22.87 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=30.3
Q ss_pred CCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHh
Q 044449 61 EKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQD 102 (200)
Q Consensus 61 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~ 102 (200)
++....+++|.++||.+--. .+...+...|++.++++..+
T Consensus 74 ~~v~~~i~~w~~~~g~v~l~--~~~~~l~~~d~~~l~~l~~~ 113 (129)
T PF13625_consen 74 QNVEQSIEDWARRYGRVRLY--KGAYLLECDDPELLDELLAD 113 (129)
T ss_pred HHHHHHHHHHHHhcCCEEEe--cCeEEEEECCHHHHHHHHhC
Confidence 44556789999999976442 14567788999999999864
No 34
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=60.93 E-value=58 Score=23.18 Aligned_cols=118 Identities=14% Similarity=0.191 Sum_probs=68.9
Q ss_pred cccccccccC-CCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCC---cccCCcccccccccccCCcce
Q 044449 51 PVIGNLLELG-EKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDS---SFYNRMVKDAIFPHQHNEFGM 126 (200)
Q Consensus 51 p~~g~~~~~~-~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~---~~~~~~~~~~~~~~~~~~~~~ 126 (200)
-.+|+...+. ........+..+.+.|-|-+++++.+. .-+|..+++++.+.+- ..++.|....-..+...|-|-
T Consensus 35 rVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpa--aPGP~kARE~l~~s~~PaiiigDaPg~~vkdeleeqGlGY 112 (277)
T COG1927 35 RVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPA--APGPKKAREILSDSDVPAIIIGDAPGLKVKDELEEQGLGY 112 (277)
T ss_pred EEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCC--CCCchHHHHHHhhcCCCEEEecCCccchhHHHHHhcCCeE
Confidence 3455555552 223455667888888877787766543 4789999999974321 112223222222222335555
Q ss_pred eeccCCcchHHHHhhhhhcc----cchhhHhhh-----HHHHHHHHHHHHHHHH
Q 044449 127 VLLPVSTTWKNLRKLCNLHI----FTTQKLDAN-----QELRRKKIKNLLSYVE 171 (200)
Q Consensus 127 ~~~~~g~~w~~~R~~~~~~~----f~~~~l~~~-----~~~~~~~~~~~~~~l~ 171 (200)
+.....+---.+|.++ .|. |+.+.++-+ ...+++.+++++++.+
T Consensus 113 Iivk~DpmiGArREFL-DPvEMA~fNaDv~kVLa~tGa~R~vQeaiD~~ie~vk 165 (277)
T COG1927 113 IIVKADPMIGARREFL-DPVEMASFNADVMKVLAATGAFRLVQEAIDKVIEDVK 165 (277)
T ss_pred EEecCCcccchhhhhc-CHHHHHhhhhHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 5555456666677777 464 776654432 4556777777777775
No 35
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=55.73 E-value=66 Score=23.42 Aligned_cols=116 Identities=12% Similarity=0.212 Sum_probs=66.6
Q ss_pred cccccccC-CCchHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCC---cccCCcccccccccccCCcceee
Q 044449 53 IGNLLELG-EKPHKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDS---SFYNRMVKDAIFPHQHNEFGMVL 128 (200)
Q Consensus 53 ~g~~~~~~-~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 128 (200)
+|+...+. .+..+...+..++++|-|-+.+++.+ ..-+|..+++++...+- ..++.|.......+...|.|-+.
T Consensus 37 ~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~--a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~GYIi 114 (277)
T PRK00994 37 VGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNP--AAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLGYII 114 (277)
T ss_pred eccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCC--CCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCcEEE
Confidence 34444442 22334455566788987777776543 45789999999975421 12233322211222233555555
Q ss_pred ccCCcchHHHHhhhhhcc----cchhhHhh-----hHHHHHHHHHHHHHHHH
Q 044449 129 LPVSTTWKNLRKLCNLHI----FTTQKLDA-----NQELRRKKIKNLLSYVE 171 (200)
Q Consensus 129 ~~~g~~w~~~R~~~~~~~----f~~~~l~~-----~~~~~~~~~~~~~~~l~ 171 (200)
..-.+---.+|.++ .|. |+.+.++- ....++++.+..+++.+
T Consensus 115 vk~DpMIGArREFL-DP~EMa~fNaD~~kVLa~tG~~RlvQ~elD~vi~~v~ 165 (277)
T PRK00994 115 VKADPMIGARREFL-DPVEMALFNADVLKVLAGTGAVRLVQEELDKVIDQVK 165 (277)
T ss_pred EecCccccchhhcc-CHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 55345555667777 464 77765543 34567788888888775
No 36
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=54.37 E-value=51 Score=20.58 Aligned_cols=61 Identities=25% Similarity=0.268 Sum_probs=38.7
Q ss_pred CCCCCCCCCCccccccccccCCCchHHHHHHHHHhCCeEEEeecC------eeEEEeCCHHHHHHHHHh
Q 044449 40 KKPLPPGPTPYPVIGNLLELGEKPHKSLAELAKIYGPILSLKLGE------VTTVVVSSAPMAKYILQD 102 (200)
Q Consensus 40 ~~~~~p~p~~~p~~g~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~------~~~v~v~~p~~~~~il~~ 102 (200)
+.+.||.-..+-++.|++. +-..+-+.++.-+||+|..+++|. .-.|+-.|-..+|....+
T Consensus 10 ~~rlppevnriLyirNLp~--~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dh 76 (124)
T KOG0114|consen 10 NIRLPPEVNRILYIRNLPF--KITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDH 76 (124)
T ss_pred CCCCChhhheeEEEecCCc--cccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHH
Confidence 3345554444445544432 234466788889999999999865 355666777777776643
No 37
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=52.34 E-value=20 Score=23.03 Aligned_cols=9 Identities=0% Similarity=0.231 Sum_probs=3.0
Q ss_pred HHhhhcCCC
Q 044449 29 VMALSSFSR 37 (200)
Q Consensus 29 ~~~~~~~~~ 37 (200)
+|++++.++
T Consensus 85 ~y~irR~~K 93 (122)
T PF01102_consen 85 SYCIRRLRK 93 (122)
T ss_dssp HHHHHHHS-
T ss_pred HHHHHHHhc
Confidence 333333333
No 38
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=50.19 E-value=37 Score=17.73 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=23.8
Q ss_pred HHHHHHhCCeEEEeecC----eeEEEeCCHHHHHHHHH
Q 044449 68 AELAKIYGPILSLKLGE----VTTVVVSSAPMAKYILQ 101 (200)
Q Consensus 68 ~~~~~~yG~v~~~~~~~----~~~v~v~~p~~~~~il~ 101 (200)
.++..+||+|.++.+.. .-.|-..+++.++....
T Consensus 2 ~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~ 39 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIE 39 (56)
T ss_dssp HHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHH
T ss_pred hHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 46778999998887643 34555688888887765
No 39
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=45.16 E-value=1e+02 Score=25.11 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=17.5
Q ss_pred HhCCeEEEeecCeeEEE-eCCHHHHHHHHHhCCCccc
Q 044449 73 IYGPILSLKLGEVTTVV-VSSAPMAKYILQDHDSSFY 108 (200)
Q Consensus 73 ~yG~v~~~~~~~~~~v~-v~~p~~~~~il~~~~~~~~ 108 (200)
+||.|++-.+-++.+-| +...+ -++=+.++...|+
T Consensus 222 rfg~V~KaqL~~~~VAVKifp~~-~kqs~~~Ek~Iy~ 257 (534)
T KOG3653|consen 222 RFGCVWKAQLDNRLVAVKIFPEQ-EKQSFQNEKNIYS 257 (534)
T ss_pred ccceeehhhccCceeEEEecCHH-HHHHHHhHHHHHh
Confidence 56778876665554433 34444 3333443434443
No 40
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=40.09 E-value=80 Score=18.65 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhCCe---EEEeecCeeEEEeCCH-----HHHHHHHHh
Q 044449 64 HKSLAELAKIYGPI---LSLKLGEVTTVVVSSA-----PMAKYILQD 102 (200)
Q Consensus 64 ~~~~~~~~~~yG~v---~~~~~~~~~~v~v~~p-----~~~~~il~~ 102 (200)
.+...++.++|.++ +++..++.+.+-|.+. +.+.++++.
T Consensus 23 ~EL~kRl~~~fPd~~~~v~Vr~~s~n~lsv~g~~k~dK~~i~eiLqE 69 (81)
T PRK10597 23 GELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDKDRISEILQE 69 (81)
T ss_pred HHHHHHHHhhCCCCCccEEEeecCCCceEecCCCcchHHHHHHHHHH
Confidence 34567788889876 8898888777777444 566666653
No 41
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=38.37 E-value=37 Score=18.16 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=14.2
Q ss_pred CCeEEEeecCeeEEEe
Q 044449 75 GPILSLKLGEVTTVVV 90 (200)
Q Consensus 75 G~v~~~~~~~~~~v~v 90 (200)
|+++++.-||+.+++.
T Consensus 4 GDvV~LKSGGp~MTV~ 19 (53)
T PF09926_consen 4 GDVVQLKSGGPRMTVT 19 (53)
T ss_pred CCEEEEccCCCCeEEE
Confidence 8999999999888876
No 42
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=35.78 E-value=1e+02 Score=18.59 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=36.9
Q ss_pred CcchHHHHhhhhh--cccchhhHhhhH-----HHHHHHHHHHHHHHHHHhhCCCce-eHHHHHHHHHHHHHHHHh
Q 044449 132 STTWKNLRKLCNL--HIFTTQKLDANQ-----ELRRKKIKNLLSYVEENCRAGKAI-DISQVVFNTSLNLLSNTI 198 (200)
Q Consensus 132 g~~w~~~R~~~~~--~~f~~~~l~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~-d~~~~~~~~~~~vi~~~~ 198 (200)
|.+||+.=|-+.. -+++...++... +-+.+.+.+++..|........++ .+-.-+...-++.+...+
T Consensus 13 Gr~WK~laR~Lg~~cral~d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~l~~lAe~l 87 (90)
T cd08780 13 GKKWKPVGRSLQKNCRALRDPAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENGLTSLAEDL 87 (90)
T ss_pred hHHHHHHHHHHcccccccchhHHHHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHccchHHHHHH
Confidence 8899998776621 136666665542 226777888899996422222222 233444444444444443
No 43
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=33.91 E-value=49 Score=21.22 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=20.9
Q ss_pred cceeeccCCcchHHH---HhhhhhcccchhhHhhhHHHHH
Q 044449 124 FGMVLLPVSTTWKNL---RKLCNLHIFTTQKLDANQELRR 160 (200)
Q Consensus 124 ~~~~~~~~g~~w~~~---R~~~~~~~f~~~~l~~~~~~~~ 160 (200)
.|++ .|++.|-++ |... ++.+...........|.
T Consensus 72 ~glI--~d~e~Wl~m~~~RN~t-sHtYde~~a~~i~~~I~ 108 (124)
T PF08780_consen 72 AGLI--DDGEIWLDMLEDRNLT-SHTYDEETAEEIYERIP 108 (124)
T ss_dssp TTSS--SHHHHHHHHHHHHHHG-GGTTSHHHHHHHHHTHH
T ss_pred cCCC--CCHHHHHHHHHHhccc-cCCCCHHHHHHHHHHHH
Confidence 3444 458899887 4466 57787766655444444
No 44
>KOG4241 consensus Mitochondrial ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=33.79 E-value=40 Score=23.78 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=23.5
Q ss_pred CCeEEEeecCeeEEEeCCHHHHHHHHHh
Q 044449 75 GPILSLKLGEVTTVVVSSAPMAKYILQD 102 (200)
Q Consensus 75 G~v~~~~~~~~~~v~v~~p~~~~~il~~ 102 (200)
..+.-++.|+..+++..|++.++++++-
T Consensus 137 ~~l~plfvgnh~ill~~d~~kik~~lri 164 (245)
T KOG4241|consen 137 SSLNPLFVGNHAILLAKDISKIKSILRI 164 (245)
T ss_pred hhhhhheeccceEEEcCChHHHHHHHHH
Confidence 3466677888999999999999999964
No 45
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=32.69 E-value=97 Score=17.48 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhhhcC
Q 044449 19 IIWLLFTCVFVMALSSF 35 (200)
Q Consensus 19 ~~~~~~~~~~~~~~~~~ 35 (200)
+++++++.++++-.+.+
T Consensus 9 ~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 9 IICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33333333344333333
No 46
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=32.26 E-value=80 Score=23.58 Aligned_cols=49 Identities=18% Similarity=0.212 Sum_probs=34.1
Q ss_pred CCCCccccccccccCCCchHHHHHHHHHhC----CeEEEeecCeeEEEeCCHH
Q 044449 46 GPTPYPVIGNLLELGEKPHKSLAELAKIYG----PILSLKLGEVTTVVVSSAP 94 (200)
Q Consensus 46 ~p~~~p~~g~~~~~~~~~~~~~~~~~~~yG----~v~~~~~~~~~~v~v~~p~ 94 (200)
+|.-+|+.|..+..........++..+.|+ +.+-+.+||..--+...++
T Consensus 128 ~~Nilpi~Gs~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d 180 (329)
T COG3660 128 GPNILPINGSPHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQED 180 (329)
T ss_pred CCceeeccCCCCcccHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHH
Confidence 677788888888886555666777888884 4777778886555554443
No 47
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=31.10 E-value=1.6e+02 Score=19.41 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=30.7
Q ss_pred chHHHHHHHHHhCCeEEEeec---------CeeEEEeCCHHHHHHHHHh
Q 044449 63 PHKSLAELAKIYGPILSLKLG---------EVTTVVVSSAPMAKYILQD 102 (200)
Q Consensus 63 ~~~~~~~~~~~yG~v~~~~~~---------~~~~v~v~~p~~~~~il~~ 102 (200)
..+.+.++.++||+|..+.+. +.-.|-..+++.++..+..
T Consensus 47 te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 47 DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred CHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 456788888999998876653 3466777999999998864
No 48
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=30.85 E-value=1.2e+02 Score=17.93 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=34.5
Q ss_pred CcchHHHHhhhhhcccchhhHhhhH---HHHHHHHHHHHHHHHHHhhCCCcee-HHHHHHHHHHHHHHHH
Q 044449 132 STTWKNLRKLCNLHIFTTQKLDANQ---ELRRKKIKNLLSYVEENCRAGKAID-ISQVVFNTSLNLLSNT 197 (200)
Q Consensus 132 g~~w~~~R~~~~~~~f~~~~l~~~~---~~~~~~~~~~~~~l~~~~~~~~~~d-~~~~~~~~~~~vi~~~ 197 (200)
|..|++.=+-+ .|+...+.... +-..+.+.+++..|.+......+++ +.+-+..+-++-+++.
T Consensus 18 G~~Wk~Lar~L---Gls~~dI~~i~~~~~~~~eq~~~mL~~W~~r~g~~AT~~~L~~aL~~~~~~diae~ 84 (86)
T cd08318 18 GEDWKTLAPHL---EMKDKEIRAIESDSEDIKMQAKQLLVAWQDREGSQATPETLITALNAAGLNEIAES 84 (86)
T ss_pred hhhHHHHHHHc---CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCccccHHHHHHHHHHcCcHHHHHh
Confidence 88999865544 35555554432 1245777888899975433333332 3444444444444433
No 49
>PF04206 MtrE: Tetrahydromethanopterin S-methyltransferase, subunit E ; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=30.08 E-value=73 Score=23.10 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=18.9
Q ss_pred CCCCcccccccccc--------CCCchHHHHHHHHHh
Q 044449 46 GPTPYPVIGNLLEL--------GEKPHKSLAELAKIY 74 (200)
Q Consensus 46 ~p~~~p~~g~~~~~--------~~~~~~~~~~~~~~y 74 (200)
-|.|+|+++-++.+ .+|.|---++-+++|
T Consensus 153 hPFPlPlla~iwGitvGAiGSstGDvhYGaEReyQ~~ 189 (269)
T PF04206_consen 153 HPFPLPLLALIWGITVGAIGSSTGDVHYGAEREYQNY 189 (269)
T ss_pred CCCchhHHHHHHHHhhcccccccCccccchHHhhhcC
Confidence 56677887777666 367776666665555
No 50
>PHA01327 hypothetical protein
Probab=29.42 E-value=20 Score=17.86 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=13.8
Q ss_pred cceeeccCCcchHHHHhhh
Q 044449 124 FGMVLLPVSTTWKNLRKLC 142 (200)
Q Consensus 124 ~~~~~~~~g~~w~~~R~~~ 142 (200)
.+.+....|++|.+.|..+
T Consensus 11 r~~vinehge~wqer~drm 29 (49)
T PHA01327 11 RNNVINEHGEEWQERKDRM 29 (49)
T ss_pred cchHHHhhHHHHHHHHHHH
Confidence 3444555699999988777
No 51
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=29.00 E-value=1.5e+02 Score=21.81 Aligned_cols=105 Identities=12% Similarity=0.227 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHhCCCc---ccCCcccccccccccCCcceeeccCCcchHHHHh
Q 044449 64 HKSLAELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQDHDSS---FYNRMVKDAIFPHQHNEFGMVLLPVSTTWKNLRK 140 (200)
Q Consensus 64 ~~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~ 140 (200)
.+...+..+.++|-|-+.+++.+ ..-+|..++|++...+-- .++.|.......+...|.|-+...-.+---.+|.
T Consensus 48 e~~~~~~~~~~~pdf~I~isPN~--~~PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l~~~g~GYIivk~DpMIGArRE 125 (276)
T PF01993_consen 48 EEVVTKMLKEWDPDFVIVISPNA--AAPGPTKAREMLSAKGIPCIVISDAPTKKAKDALEEEGFGYIIVKADPMIGARRE 125 (276)
T ss_dssp HHHHHHHHHHH--SEEEEE-S-T--TSHHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHHHHTT-EEEEETTS------TT
T ss_pred HHHHHHHHHhhCCCEEEEECCCC--CCCCcHHHHHHHHhCCCCEEEEcCCCchhhHHHHHhcCCcEEEEecCcccccccc
Confidence 34556667788887777666543 346889999999654321 1222322222223333566666653555556677
Q ss_pred hhhhcc----cchhhHhh-----hHHHHHHHHHHHHHHHH
Q 044449 141 LCNLHI----FTTQKLDA-----NQELRRKKIKNLLSYVE 171 (200)
Q Consensus 141 ~~~~~~----f~~~~l~~-----~~~~~~~~~~~~~~~l~ 171 (200)
++ .|. |+.+.++- -...++++.+..+++.+
T Consensus 126 FL-DP~EMa~fNaD~~kVLa~tGa~RlvQ~elD~vi~~v~ 164 (276)
T PF01993_consen 126 FL-DPVEMALFNADVLKVLAITGAFRLVQEELDKVIDQVK 164 (276)
T ss_dssp T---HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred cc-CHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 77 464 77665543 24667778888888775
No 52
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=28.99 E-value=89 Score=21.35 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=29.2
Q ss_pred CCCchHHHHHHHHHhC-CeEEEeecCe----eEEEeCCHHHHH
Q 044449 60 GEKPHKSLAELAKIYG-PILSLKLGEV----TTVVVSSAPMAK 97 (200)
Q Consensus 60 ~~~~~~~~~~~~~~yG-~v~~~~~~~~----~~v~v~~p~~~~ 97 (200)
.+...+...++++++| |+.++.++|. .-++++||-.+-
T Consensus 153 GGkIteaVk~lr~~hgI~VISL~M~GSVpdVADlVvtDPvqAG 195 (218)
T COG1707 153 GGKITEAVKELREEHGIPVISLNMFGSVPDVADLVVTDPVQAG 195 (218)
T ss_pred cchHHHHHHHHHHhcCCeEEEeccCCCCcchhheeecCchHhh
Confidence 4567788899999999 9999988773 235789986554
No 53
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=28.64 E-value=2.5e+02 Score=21.78 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=35.6
Q ss_pred cccchhhHhhhHHHHHHHHHHHHHHHHHH---hhCC-CceeHHHHHHHHHHHHHHHHh
Q 044449 145 HIFTTQKLDANQELRRKKIKNLLSYVEEN---CRAG-KAIDISQVVFNTSLNLLSNTI 198 (200)
Q Consensus 145 ~~f~~~~l~~~~~~~~~~~~~~~~~l~~~---~~~~-~~~d~~~~~~~~~~~vi~~~~ 198 (200)
..++..+-+++..+......++...|+.. ..++ .-.+..+.+..-.+.+||-++
T Consensus 168 ~sysT~atrkmN~iL~~KlREfa~~Lr~~~~~~~~~~~i~~t~~emm~eiFrvicicl 225 (457)
T KOG4128|consen 168 HSYSTQATRKMNLILKSKLREFASMLRAQFTFNGNGCRIPDTIQEMMPEIFRVICICL 225 (457)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhhhc
Confidence 44777788888888888888887777421 2222 334556666667788888654
No 54
>PHA03049 IMV membrane protein; Provisional
Probab=27.53 E-value=1.2e+02 Score=17.01 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHhhh
Q 044449 19 IIWLLFTCVFVMALS 33 (200)
Q Consensus 19 ~~~~~~~~~~~~~~~ 33 (200)
+++++++.++++-++
T Consensus 9 iICVaIi~lIvYgiY 23 (68)
T PHA03049 9 IICVVIIGLIVYGIY 23 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 55
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=27.51 E-value=1.1e+02 Score=21.20 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhCCeEEEee----cCeeEEEeCCHHHHHHH
Q 044449 64 HKSLAELAKIYGPILSLKL----GEVTTVVVSSAPMAKYI 99 (200)
Q Consensus 64 ~~~~~~~~~~yG~v~~~~~----~~~~~v~v~~p~~~~~i 99 (200)
..-++....+||++..+|+ +|.-.|-.-||..+.+.
T Consensus 24 k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DA 63 (195)
T KOG0107|consen 24 KRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDA 63 (195)
T ss_pred hHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHH
Confidence 3456888899999999887 33455666676555444
No 56
>PLN03120 nucleic acid binding protein; Provisional
Probab=26.15 E-value=2.8e+02 Score=20.63 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=36.0
Q ss_pred chHHHHHHHHHhCCeEEEee------cCeeEEEeCCHHHHHHHHHhCCCcccCCc
Q 044449 63 PHKSLAELAKIYGPILSLKL------GEVTTVVVSSAPMAKYILQDHDSSFYNRM 111 (200)
Q Consensus 63 ~~~~~~~~~~~yG~v~~~~~------~~~~~v~v~~p~~~~~il~~~~~~~~~~~ 111 (200)
..+.+.++...||+|..+.+ .+.-.|...+++.++..+.-++..+.++.
T Consensus 17 TE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~ 71 (260)
T PLN03120 17 TERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQS 71 (260)
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCce
Confidence 44667888899999988877 24567778999999888765555555544
No 57
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=26.02 E-value=2.6e+02 Score=22.73 Aligned_cols=47 Identities=13% Similarity=0.291 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCeEEEeec------------CeeEEEeCCHHHHHHHHHh-CCCcccCCc
Q 044449 65 KSLAELAKIYGPILSLKLG------------EVTTVVVSSAPMAKYILQD-HDSSFYNRM 111 (200)
Q Consensus 65 ~~~~~~~~~yG~v~~~~~~------------~~~~v~v~~p~~~~~il~~-~~~~~~~~~ 111 (200)
+-+.+.+.+||+|..+.+. |.-.|-..+++.++..+.. ++..|..+.
T Consensus 434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~ 493 (509)
T TIGR01642 434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRV 493 (509)
T ss_pred HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3466778999999988764 2236677888888777653 445555443
No 58
>PF02681 DUF212: Divergent PAP2 family; InterPro: IPR003832 This family is related to the acid phosphatase/vanadium-dependent haloperoxidases; members of this group are uncharacterised.
Probab=25.64 E-value=74 Score=21.04 Aligned_cols=54 Identities=11% Similarity=0.255 Sum_probs=31.8
Q ss_pred cchhhHhhhHHHHHHHHHHHHHHHHHHhh---CCCceeHHHHHHHHHHHHHHHHhcC
Q 044449 147 FTTQKLDANQELRRKKIKNLLSYVEENCR---AGKAIDISQVVFNTSLNLLSNTIFS 200 (200)
Q Consensus 147 f~~~~l~~~~~~~~~~~~~~~~~l~~~~~---~~~~~d~~~~~~~~~~~vi~~~~fG 200 (200)
+....+++-.....+..+++.+.+.+... ....-.+.+.+-+-..++++-+++|
T Consensus 81 yDA~GVRr~aG~qA~~lN~l~~~~~~~~~~~~~~~~~~LKE~lGHtp~EV~~G~llG 137 (141)
T PF02681_consen 81 YDAMGVRRAAGKQAKVLNQLIEELEEEHQSEPPIQEKKLKELLGHTPLEVFAGALLG 137 (141)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcccccCCCCHHHHHHHHHHH
Confidence 44455565555556666777776653221 1223456677777777777776665
No 59
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=23.79 E-value=1.3e+02 Score=15.88 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=22.3
Q ss_pred CchHHHHHHHHHhCCeEEEeec-CeeEEEeC--CHHHHH
Q 044449 62 KPHKSLAELAKIYGPILSLKLG-EVTTVVVS--SAPMAK 97 (200)
Q Consensus 62 ~~~~~~~~~~~~yG~v~~~~~~-~~~~v~v~--~p~~~~ 97 (200)
+......+..+.+|.|...... ..+.+.+. +...++
T Consensus 12 ~~~~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae 50 (53)
T PF14605_consen 12 DLAEEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAE 50 (53)
T ss_pred hHHHHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHH
Confidence 3344555566678999999887 24555443 555544
No 60
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=23.39 E-value=76 Score=21.30 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=4.7
Q ss_pred chHHHHHHHH
Q 044449 63 PHKSLAELAK 72 (200)
Q Consensus 63 ~~~~~~~~~~ 72 (200)
..+.++++++
T Consensus 111 ~~e~i~qLr~ 120 (153)
T PRK14584 111 SPELIAQLKS 120 (153)
T ss_pred CHHHHHHHHh
Confidence 3344555544
No 61
>TIGR01113 mtrE N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E. coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=22.83 E-value=1e+02 Score=22.58 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=18.3
Q ss_pred CCCCcccccccccc--------CCCchHHHHHHHHHh
Q 044449 46 GPTPYPVIGNLLEL--------GEKPHKSLAELAKIY 74 (200)
Q Consensus 46 ~p~~~p~~g~~~~~--------~~~~~~~~~~~~~~y 74 (200)
-|.++|+++-++.+ .+|.|---++.+++|
T Consensus 153 hPFPlPlla~iwGItvGAiGSstGDvhYGaEreyQ~~ 189 (283)
T TIGR01113 153 HPFPLPLLAMIWGITIGAIGSSTGDVHYGAEREYQHY 189 (283)
T ss_pred CCCchhHHHHHHHHhhcccccccCCcccchHHHhhcC
Confidence 45567777766665 367776666665555
No 62
>PRK09458 pspB phage shock protein B; Provisional
Probab=22.35 E-value=1.7e+02 Score=16.96 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhhhcCCC
Q 044449 19 IIWLLFTCVFVMALSSFSR 37 (200)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~ 37 (200)
+++++++.-++.+.++..+
T Consensus 11 iiF~ifVaPiWL~LHY~sk 29 (75)
T PRK09458 11 TIFVLFVAPIWLWLHYRSK 29 (75)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 3333333334433344433
No 63
>COG4471 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.89 E-value=1.9e+02 Score=17.35 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=25.2
Q ss_pred HHHHHHhCCeEEEeecCeeEEEeCCHHHHHHHHHh
Q 044449 68 AELAKIYGPILSLKLGEVTTVVVSSAPMAKYILQD 102 (200)
Q Consensus 68 ~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~il~~ 102 (200)
.+..++||+|.-..--.+-.++-++-+.+.+++.+
T Consensus 19 aRqLrkfG~v~Y~Skk~kY~vlYvn~~~ve~~~~k 53 (90)
T COG4471 19 ARQLRKFGDVHYVSKKSKYVVLYVNEQDVEQIVEK 53 (90)
T ss_pred hHHHHhcCCEEEEecceeEEEEEECHHHHHHHHHH
Confidence 44558899988765444556666888889998864
No 64
>PRK00972 tetrahydromethanopterin S-methyltransferase subunit E; Provisional
Probab=21.67 E-value=1.2e+02 Score=22.34 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=18.4
Q ss_pred CCCCcccccccccc--------CCCchHHHHHHHHHh
Q 044449 46 GPTPYPVIGNLLEL--------GEKPHKSLAELAKIY 74 (200)
Q Consensus 46 ~p~~~p~~g~~~~~--------~~~~~~~~~~~~~~y 74 (200)
-|.++|+++-++.+ .+|.|---++.+++|
T Consensus 159 hPFPLPlla~iwGItvGAiGSstGDvhYGaEreyQ~~ 195 (292)
T PRK00972 159 HPFPLPLLALIWGITVGAIGSSTGDVHYGAEREYQKY 195 (292)
T ss_pred CCCchhHHHHHHHHhhccccccCCccccchHHHhhcC
Confidence 45567777766665 367776666665555
No 65
>PHA03048 IMV membrane protein; Provisional
Probab=21.53 E-value=1.1e+02 Score=18.30 Aligned_cols=30 Identities=27% Similarity=0.565 Sum_probs=14.5
Q ss_pred CcceeeeeccchhhHHHHHHHHHHHHHHHH
Q 044449 1 MDVLSCILSLTKMDMLSCIIWLLFTCVFVM 30 (200)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (200)
||.+..+-+.-+..+..-++++++.+.+.+
T Consensus 1 MDi~~~~~ny~S~vli~GIiLL~~aCIfAf 30 (93)
T PHA03048 1 MDIMGMISNYFSTALIGGIILLAASCIFAF 30 (93)
T ss_pred CCHHHHhhcccchHHHHHHHHHHHHHHHhh
Confidence 555555544444444444444444555443
No 66
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=21.33 E-value=1.4e+02 Score=17.73 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=19.2
Q ss_pred cCeeEEEeCCHHHHHHHHHhCCCc
Q 044449 83 GEVTTVVVSSAPMAKYILQDHDSS 106 (200)
Q Consensus 83 ~~~~~v~v~~p~~~~~il~~~~~~ 106 (200)
.+.-.++++|.+.++.++.++.+.
T Consensus 40 ~~~~~vvfGd~~~i~~~Le~~~~~ 63 (83)
T PF08503_consen 40 SGNFGVVFGDWDEIKPFLEANKDK 63 (83)
T ss_dssp ESSEEEEEEEHHHHHHHHHHTTTT
T ss_pred CCCcEEEEecHHHHHHHHHhchhh
Confidence 356788999999999999865443
No 67
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=21.29 E-value=1.9e+02 Score=21.98 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=26.6
Q ss_pred CCCchHHHHHHHHHhC-CeEEEeecC-eeEEEeCCHH
Q 044449 60 GEKPHKSLAELAKIYG-PILSLKLGE-VTTVVVSSAP 94 (200)
Q Consensus 60 ~~~~~~~~~~~~~~yG-~v~~~~~~~-~~~v~v~~p~ 94 (200)
..++.++-+++.++|| +++.+++-+ .|.+-=..++
T Consensus 149 medP~eWArk~Vk~fgadmvTiHlIsTdPki~D~p~~ 185 (403)
T COG2069 149 MEDPGEWARKCVKKFGADMVTIHLISTDPKIKDTPAK 185 (403)
T ss_pred hhCHHHHHHHHHHHhCCceEEEEeecCCccccCCCHH
Confidence 5789999999999999 899987644 4555555554
No 68
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=21.16 E-value=2.9e+02 Score=22.05 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCeEEEeec-----CeeEEEeCCHHHHHHHHHh-CCCcccCC
Q 044449 66 SLAELAKIYGPILSLKLG-----EVTTVVVSSAPMAKYILQD-HDSSFYNR 110 (200)
Q Consensus 66 ~~~~~~~~yG~v~~~~~~-----~~~~v~v~~p~~~~~il~~-~~~~~~~~ 110 (200)
-+.+.+.+||+|..+.+. |.-.|-..+++.+...... ++..|..+
T Consensus 388 dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr 438 (457)
T TIGR01622 388 DVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGK 438 (457)
T ss_pred HHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCe
Confidence 355667899999887664 3344456888877776643 34444443
No 69
>COG5329 Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
Probab=20.91 E-value=87 Score=26.01 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=20.5
Q ss_pred CCchHHHHHHHHHhCCeEEEeecCeeE
Q 044449 61 EKPHKSLAELAKIYGPILSLKLGEVTT 87 (200)
Q Consensus 61 ~~~~~~~~~~~~~yG~v~~~~~~~~~~ 87 (200)
.-....+.++.++||+|+-+.+.++.-
T Consensus 293 ~af~kHF~~L~~~YG~v~vvNLl~tK~ 319 (570)
T COG5329 293 SAFDKHFDKLREKYGDVYVVNLLKTKG 319 (570)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcccCCc
Confidence 345677899999999999887765433
No 70
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=20.84 E-value=2e+02 Score=17.06 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=27.4
Q ss_pred CcchHHHHhhhhhcccchhhHhhhHHH-----HHHHHHHHHHHHHHH
Q 044449 132 STTWKNLRKLCNLHIFTTQKLDANQEL-----RRKKIKNLLSYVEEN 173 (200)
Q Consensus 132 g~~w~~~R~~~~~~~f~~~~l~~~~~~-----~~~~~~~~~~~l~~~ 173 (200)
|..|++.=+-+ .|+...+..+..- +.+.+.+++..|.+.
T Consensus 13 G~~Wk~lar~L---G~s~~eI~~ie~~~~r~~~~eq~~~mL~~W~~r 56 (86)
T cd08777 13 GKKWKRCARKL---GFTESEIEEIDHDYERDGLKEKVHQMLHKWKMK 56 (86)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHhcccCCHHHHHHHHHHHHHHc
Confidence 88999876655 2666666665433 467788999999753
No 71
>smart00362 RRM_2 RNA recognition motif.
Probab=20.38 E-value=1.5e+02 Score=15.42 Aligned_cols=39 Identities=28% Similarity=0.352 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhCCeEEEeec-------CeeEEEeCCHHHHHHHHHh
Q 044449 64 HKSLAELAKIYGPILSLKLG-------EVTTVVVSSAPMAKYILQD 102 (200)
Q Consensus 64 ~~~~~~~~~~yG~v~~~~~~-------~~~~v~v~~p~~~~~il~~ 102 (200)
...+.++.++||++..+.+. +.-.+-..+++.+++.+..
T Consensus 13 ~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 58 (72)
T smart00362 13 EEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEA 58 (72)
T ss_pred HHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 45567777899987765443 3345566888888887753
No 72
>PHA02902 putative IMV membrane protein; Provisional
Probab=20.37 E-value=1.8e+02 Score=16.27 Aligned_cols=8 Identities=13% Similarity=0.907 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 044449 22 LLFTCVFV 29 (200)
Q Consensus 22 ~~~~~~~~ 29 (200)
+++++++.
T Consensus 13 v~Ivclli 20 (70)
T PHA02902 13 VIIFCLLI 20 (70)
T ss_pred HHHHHHHH
Confidence 33334333
No 73
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=20.21 E-value=1.3e+02 Score=18.45 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=24.8
Q ss_pred CCeEEEeecCeeEEEeCCHHHHHHHHHh
Q 044449 75 GPILSLKLGEVTTVVVSSAPMAKYILQD 102 (200)
Q Consensus 75 G~v~~~~~~~~~~v~v~~p~~~~~il~~ 102 (200)
|+|..+.+.+...++|+.-+-.++|...
T Consensus 35 ~gVLti~~~~~~~~VINkQ~p~~QIWls 62 (97)
T TIGR03422 35 SGVLTLELPSVGTYVINKQPPNKQIWLS 62 (97)
T ss_pred CCEEEEEECCCCEEEEeCCChhhHHhee
Confidence 6899999988889999999999999864
Done!