Query 044454
Match_columns 286
No_of_seqs 173 out of 646
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:26:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 100.0 3.7E-39 8.1E-44 326.9 23.1 220 30-285 19-252 (623)
2 PF12819 Malectin_like: Carboh 100.0 6.2E-37 1.3E-41 291.1 20.3 214 39-285 1-234 (347)
3 PLN03150 hypothetical protein; 99.9 1.3E-22 2.8E-27 206.3 16.0 152 36-195 193-364 (623)
4 PF11721 Malectin: Di-glucose 99.9 5.5E-23 1.2E-27 178.0 9.9 148 36-188 2-174 (174)
5 PF12819 Malectin_like: Carboh 99.8 4.4E-19 9.6E-24 168.9 12.8 153 35-193 179-347 (347)
6 KOG3593 Predicted receptor-lik 97.5 0.00011 2.3E-09 68.2 3.9 109 36-146 61-173 (355)
7 PF03944 Endotoxin_C: delta en 30.7 3E+02 0.0066 22.6 11.8 81 103-194 52-143 (143)
8 PF02532 PsbI: Photosystem II 29.6 90 0.002 20.1 3.2 19 1-19 1-19 (36)
9 KOG2932 E3 ubiquitin ligase in 20.3 70 0.0015 30.6 2.1 34 80-113 58-94 (389)
10 PF07127 Nodulin_late: Late no 19.6 98 0.0021 21.3 2.2 17 1-17 1-17 (54)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=100.00 E-value=3.7e-39 Score=326.94 Aligned_cols=220 Identities=20% Similarity=0.225 Sum_probs=162.2
Q ss_pred CCCCCCeEEEeeCCCCC--CCCCCCeeeCCCCCCCcCCCCccccccccCCCCCCcccceeeecCC----CceEEEEecC-
Q 044454 30 YPLAESNIFLACGWLGN--TGPPGQTWVGDVNSQYSPHEDASAPKSTIVTENKQVPYSKSRVSHS----QFTYIFNVTA- 102 (286)
Q Consensus 30 ~~p~~~~~~InCG~~~~--~d~~gr~W~~D~~~~~~~~~~~~~~~~~~~p~~p~~~Y~TAR~f~~----~~tY~fpV~~- 102 (286)
++|+.+.|+||||++++ +|.+||+|++|.. +. ++.. ... ..|+.++++|+|+|+|+. ..||+||+.+
T Consensus 19 ~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~--~~-~~~~-~~~--~~~~~~~~~~~t~R~F~~~~g~~~cY~~~~~~~ 92 (623)
T PLN03150 19 ASPEPFTMRISCGARVNVRTAPTNTLWYKDFA--YT-GGIP-ANA--TRPSFIAPPLKTLRYFPLSDGPENCYNINRVPK 92 (623)
T ss_pred ccCCCccEEEeCCCCCCcccCCCCCEEcCCcc--cc-cCcc-ccc--cCcccccchhhccccCCcccccccceEeeecCC
Confidence 44433799999999984 4578999999965 43 2211 111 122334578999999996 5699999876
Q ss_pred CcEEEEEEeecCCCCCCCCCCceEEEEECC---EEEEeecccchhccCCCCCcEEEEEEEEecCCCCeEEEEEEeCCCCC
Q 044454 103 GQKFIRLHFYPSPKPGFNTSAAFFSVKAAS---FTLLRNFSASLAAYGNDRSPFFKEFCINIEDDQRLLNITFTPSPDYN 179 (286)
Q Consensus 103 G~YlVRLHF~~~~~~~~~~~~~~FdV~in~---~~ll~~fd~~~~a~~~~~~~~~kEf~v~v~~~~~~L~I~f~P~~~~~ 179 (286)
|+|+|||||++..|++++ ..+.|||++|+ .+++.+|+.. ...++||+++++ +++.|.|||.|.+
T Consensus 93 g~ylVRl~F~~~~y~~~~-~~~~Fdv~~~~~~~~tv~~~~~~~-------~~~v~~E~i~~~--~~~~l~vcf~~~~--- 159 (623)
T PLN03150 93 GHYSVRVFFGLVAEPNFD-SEPLFDVSVEGTQISSLKSGWSSH-------DEQVFAEALVFL--TDGSASICFHSTG--- 159 (623)
T ss_pred CcEEEEEEeecCCcCCCC-CCCceEEEECcEEEEEEecCcccC-------CCcEEEEEEEEe--cCCcEEEEEecCC---
Confidence 899999999988887766 56899999999 6666666532 246899999999 8899999999986
Q ss_pred CCceeEEEEEeEEcCCccccccCCCCCCCeeeecCCCCcccchhhhhheeeeEeeCCcc----cCCCCCCCCCcceecCC
Q 044454 180 DSYAFINGIEIVSMPLNFYYTAADDPGGGFRFVGQDNPYSILNINALATLYRINVGGKQ----ISPSDDTGGMYRTWEMD 255 (286)
Q Consensus 180 ~~~afINaIEI~~lp~~ly~~~~d~~~~~~~~vg~~~~~~~~~~~aLet~yRlNvGG~~----I~~~~Dt~~l~R~W~~D 255 (286)
++.||||||||++||+++|..+. . . ..+.+||++||+||||+. +++++|..|+||+|.+|
T Consensus 160 ~~~pFIs~iEv~~l~~~~y~~~~-------~-~--------~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d 223 (623)
T PLN03150 160 HGDPAILSIEILQVDDKAYNFGP-------S-W--------GQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRM 223 (623)
T ss_pred CCCCceeEEEEEEcCcccccccc-------c-c--------cCceEEEEEEEEEecCcccccccCCCCCcccCccccCcC
Confidence 67899999999999999996211 0 0 125679999999999975 56777883469999999
Q ss_pred CCCcccCCCCCCccccceecCCCCCCCCCC
Q 044454 256 DPYLTDARPSALPVNQSIHLTWIRNYSAPD 285 (286)
Q Consensus 256 ~~yl~~~~~~~~~~~~~i~y~~~~~~~AP~ 285 (286)
++|+.+... .......|+|+..+.++||.
T Consensus 224 ~~~~~~~~~-~~st~~~I~~~~~~~~~~P~ 252 (623)
T PLN03150 224 QTFGSGSDQ-AISTENVIKKASNAPNFYPE 252 (623)
T ss_pred cccCCCccc-ccccccccccccCCCccChH
Confidence 999844321 11223445654445666664
No 2
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=100.00 E-value=6.2e-37 Score=291.12 Aligned_cols=214 Identities=30% Similarity=0.541 Sum_probs=150.3
Q ss_pred EeeCCCCC-C---C-CCCCeeeCCCCCCCcCCCC-cccccccc-CCCCCCcccceeeecC--CCceEEEEec--CC-cEE
Q 044454 39 LACGWLGN-T---G-PPGQTWVGDVNSQYSPHED-ASAPKSTI-VTENKQVPYSKSRVSH--SQFTYIFNVT--AG-QKF 106 (286)
Q Consensus 39 InCG~~~~-~---d-~~gr~W~~D~~~~~~~~~~-~~~~~~~~-~p~~p~~~Y~TAR~f~--~~~tY~fpV~--~G-~Yl 106 (286)
||||++.+ + | ..||+|++|.. |...+. ..++.... .....+++|+|||+|+ .+.||+|++. +| +||
T Consensus 1 IdCG~~~~~s~y~D~~tg~~~~~D~~--~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~~g~r~cY~l~~~~~~~~~yl 78 (347)
T PF12819_consen 1 IDCGSSSNSSSYVDDSTGRTWVSDDD--FIDTGKSGNISSQPDSSSSDSSPPYQTARIFPEGSRNCYTLPVTPPGGGKYL 78 (347)
T ss_pred CcCCCCCCCcccccCCCCcEEeCCCC--cccCCCccccccccCCcCCccccccceEEEcCCCCccEEEeeccCCCCceEE
Confidence 79999863 2 3 35999999996 655432 22211101 1124468999999999 4589999997 33 999
Q ss_pred EEEEeecCCCCCCC--C--CCceEEEEECCEEEEeecccchhccCCCCCcEEEEEEEEecCC-CCeEEEEEEeCCCCCCC
Q 044454 107 IRLHFYPSPKPGFN--T--SAAFFSVKAASFTLLRNFSASLAAYGNDRSPFFKEFCINIEDD-QRLLNITFTPSPDYNDS 181 (286)
Q Consensus 107 VRLHF~~~~~~~~~--~--~~~~FdV~in~~~ll~~fd~~~~a~~~~~~~~~kEf~v~v~~~-~~~L~I~f~P~~~~~~~ 181 (286)
|||||++..|.+.+ . ....|++++|.. .|...++.. . ...+++|||++++ . ++.|.|||+|..+ +.
T Consensus 79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n-~~~tV~~~~-~---~~~~~~~E~ii~v--~~~~~l~vclv~~~~--g~ 149 (347)
T PF12819_consen 79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFN-FWSTVNLSN-S---PSSPVVKEFIINV--TWSDTLSVCLVPTGS--GT 149 (347)
T ss_pred EEEEeccccccccccccccCCcceEEEECCc-eeEEEEecC-C---CcceEEEEEEEEE--cCCCcEEEEEEeCCC--CC
Confidence 99999977776431 1 246799999875 455554432 1 1257999999999 6 7999999999874 45
Q ss_pred ceeEEEEEeEEcCCccccccCCCCCCCeeeecCCCCcccchhhhhheeeeEeeCCcc--cCCCCCCCCCcceecCCCCCc
Q 044454 182 YAFINGIEIVSMPLNFYYTAADDPGGGFRFVGQDNPYSILNINALATLYRINVGGKQ--ISPSDDTGGMYRTWEMDDPYL 259 (286)
Q Consensus 182 ~afINaIEI~~lp~~ly~~~~d~~~~~~~~vg~~~~~~~~~~~aLet~yRlNvGG~~--I~~~~Dt~~l~R~W~~D~~yl 259 (286)
+||||||||++||+++|. +. ....+.+||++||+||||.. |++++|+ +||+|. +|.
T Consensus 150 ~pFIsaiEl~~lp~~ly~---~~--------------~~~~s~~L~~~~R~n~G~~~~~iryp~D~--~dR~W~---~~~ 207 (347)
T PF12819_consen 150 FPFISAIELRPLPDSLYP---DT--------------DANSSQALETVYRLNVGGSSSFIRYPDDT--YDRIWQ---PYS 207 (347)
T ss_pred CCceeEEEEEECCcccee---cc--------------ccCCCceeEEEEeecCCCcccccCCCCCc--ceeecc---ccc
Confidence 699999999999999995 11 01257899999999999998 9999999 999998 442
Q ss_pred ccCCCCCCccccceecCC-CCCCCCCC
Q 044454 260 TDARPSALPVNQSIHLTW-IRNYSAPD 285 (286)
Q Consensus 260 ~~~~~~~~~~~~~i~y~~-~~~~~AP~ 285 (286)
............+|++.. .+++.||.
T Consensus 208 ~~~~~~~ist~~~i~~~~~~~~~~~P~ 234 (347)
T PF12819_consen 208 SSPGWSNISTTSNININSSNNPYDAPS 234 (347)
T ss_pred cCccccccccceeeecccCCccCcChH
Confidence 111111111223344222 67888885
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.89 E-value=1.3e-22 Score=206.28 Aligned_cols=152 Identities=16% Similarity=0.197 Sum_probs=116.6
Q ss_pred eEEEeeCCCC-C--CCC------CCCeeeCCCCCCCcCCC--Cc--cccccc--cCCC-CCCcccceeeecCC---CceE
Q 044454 36 NIFLACGWLG-N--TGP------PGQTWVGDVNSQYSPHE--DA--SAPKST--IVTE-NKQVPYSKSRVSHS---QFTY 96 (286)
Q Consensus 36 ~~~InCG~~~-~--~d~------~gr~W~~D~~~~~~~~~--~~--~~~~~~--~~p~-~p~~~Y~TAR~f~~---~~tY 96 (286)
.+|||||+.. . .|. .+|.|.+|.. |..+. .. ...+.+ ..|. +|+.+|+|||++.. +++|
T Consensus 193 ~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~--~~~~~~~~~st~~~I~~~~~~~~~~P~~VyqTA~~~~~~~~~lty 270 (623)
T PLN03150 193 AKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQT--FGSGSDQAISTENVIKKASNAPNFYPESLYQSALVSTDTQPDLSY 270 (623)
T ss_pred EEEEEecCcccccccCCCCCcccCccccCcCcc--cCCCcccccccccccccccCCCccChHHHhhhhccccCCCCceEE
Confidence 5799999874 2 233 2799999976 43321 11 111111 1233 67789999999875 5799
Q ss_pred EEEecC-CcEEEEEEeecCCCCCCCCCCceEEEEECCEEEEeecccchhccCCCCCcEEEEEEEEecCCCCeEEEEEEeC
Q 044454 97 IFNVTA-GQKFIRLHFYPSPKPGFNTSAAFFSVKAASFTLLRNFSASLAAYGNDRSPFFKEFCINIEDDQRLLNITFTPS 175 (286)
Q Consensus 97 ~fpV~~-G~YlVRLHF~~~~~~~~~~~~~~FdV~in~~~ll~~fd~~~~a~~~~~~~~~kEf~v~v~~~~~~L~I~f~P~ 175 (286)
.|+|++ |.|+|||||||+.......++|+|+|+|||..++++||+...++ ....++++||.+++ +++.|+|+|+|.
T Consensus 271 ~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g-~~~~~~~~~~~v~~--~~g~l~isl~p~ 347 (623)
T PLN03150 271 TMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSG-ERYTALVLNKTVAV--SGRTLTIVLQPK 347 (623)
T ss_pred EeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcC-CcccceEEEeEEee--cCCeEEEEEeeC
Confidence 999987 79999999999975444457899999999999999999876654 23578999999999 668999999998
Q ss_pred CCCCCCceeEEEEEeEEcCC
Q 044454 176 PDYNDSYAFINGIEIVSMPL 195 (286)
Q Consensus 176 ~~~~~~~afINaIEI~~lp~ 195 (286)
. ++.||||||||+++..
T Consensus 348 ~---~s~pilNaiEI~~~~~ 364 (623)
T PLN03150 348 K---GTHAIINAIEVFEIIT 364 (623)
T ss_pred C---CCcceeeeeeeeeccc
Confidence 6 5679999999999976
No 4
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.89 E-value=5.5e-23 Score=177.98 Aligned_cols=148 Identities=22% Similarity=0.286 Sum_probs=94.8
Q ss_pred eEEEeeCCCCCCCCCCCeeeCCCCCCCcCCCC---cc-------ccccccCCC-CCCcccceeeecCCCceEEEE-ecCC
Q 044454 36 NIFLACGWLGNTGPPGQTWVGDVNSQYSPHED---AS-------APKSTIVTE-NKQVPYSKSRVSHSQFTYIFN-VTAG 103 (286)
Q Consensus 36 ~~~InCG~~~~~d~~gr~W~~D~~~~~~~~~~---~~-------~~~~~~~p~-~p~~~Y~TAR~f~~~~tY~fp-V~~G 103 (286)
.+||||||+..+|..|..|.+|.. |..+.. .. .......+. .++.+|+|+|.-+.+++|.+| +.+|
T Consensus 2 ~~~IN~Gg~~~~~~~g~~w~~D~~--~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~~f~Y~ip~~~~G 79 (174)
T PF11721_consen 2 VLRINAGGPAYTDSSGIVWEADQY--YTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPSSFSYDIPVVPNG 79 (174)
T ss_dssp EEEEEETSSSEEETTTEEE-SSSS--STTSS-----------SSTTS--TTS-HHHHHTTT-----SSSEEEEEE--S-E
T ss_pred EEEEECCCCcccCCCCCEEcCCCC--CCCCCcccccccccccccccccccccCCCchhhhHhhcCCCCceEEEEecCCCc
Confidence 489999999877788999999986 322221 00 000001111 345899999997668999999 5569
Q ss_pred cEEEEEEeecCCCCC----CCCCCceEEEEECCEEEEeecccchhccCCCCCcEEEEE-EEEecCCCCeEEEEEEeCCCC
Q 044454 104 QKFIRLHFYPSPKPG----FNTSAAFFSVKAASFTLLRNFSASLAAYGNDRSPFFKEF-CINIEDDQRLLNITFTPSPDY 178 (286)
Q Consensus 104 ~YlVRLHF~~~~~~~----~~~~~~~FdV~in~~~ll~~fd~~~~a~~~~~~~~~kEf-~v~v~~~~~~L~I~f~P~~~~ 178 (286)
.|.|||||+|+.+.. -..++|+|||+|||.+++++||+..++++. ..+++++| .+.+ +++.|+|+|.+....
T Consensus 80 ~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~-~~~~~~~~~~v~v--~dg~L~i~f~~~~~~ 156 (174)
T PF11721_consen 80 TYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGF-NKAAVRRFFNVTV--TDGTLNIQFVWAGKG 156 (174)
T ss_dssp EEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSS-S---EEEEEEEEE--ETTEEETTEEEE--S
T ss_pred EEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCC-ceEEEEEEEEEEE--eCCcEEEEEEecCCC
Confidence 999999999998875 346789999999999999999999988754 25788888 6888 789999999942100
Q ss_pred --------CCCceeEEEE
Q 044454 179 --------NDSYAFINGI 188 (286)
Q Consensus 179 --------~~~~afINaI 188 (286)
....|.||||
T Consensus 157 ~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 157 TLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp EEEEEEESSSSSSSEEEE
T ss_pred cEEeeccccCCCcEEeeC
Confidence 0235788887
No 5
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=99.80 E-value=4.4e-19 Score=168.85 Aligned_cols=153 Identities=22% Similarity=0.366 Sum_probs=105.8
Q ss_pred CeEEEeeCCCC----C-CCCCCCeeeCCCCC-CCcCCCCcccccc--ccC-CC-CCCcccceeeecCC-----CceEEEE
Q 044454 35 SNIFLACGWLG----N-TGPPGQTWVGDVNS-QYSPHEDASAPKS--TIV-TE-NKQVPYSKSRVSHS-----QFTYIFN 99 (286)
Q Consensus 35 ~~~~InCG~~~----~-~d~~gr~W~~D~~~-~~~~~~~~~~~~~--~~~-p~-~p~~~Y~TAR~f~~-----~~tY~fp 99 (286)
-.+|+|||++. . .|..+|.|.+.... ....... ..... ... +. +|..+|+|||.... +++|.|
T Consensus 179 ~~~R~n~G~~~~~iryp~D~~dR~W~~~~~~~~~~~ist-~~~i~~~~~~~~~~~P~~V~~TA~~~~~~s~~~nltw~~- 256 (347)
T PF12819_consen 179 TVYRLNVGGSSSFIRYPDDTYDRIWQPYSSSPGWSNIST-TSNININSSNNPYDAPSAVYQTARTPSNSSDPLNLTWSF- 256 (347)
T ss_pred EEEeecCCCcccccCCCCCcceeeccccccCcccccccc-ceeeecccCCccCcChHHHHHhhhcccccccceEEEecc-
Confidence 47899999885 1 36779999953110 0110000 01111 111 22 67899999999763 358999
Q ss_pred ecCC-cEEEEEEeecCCCCCCCCCCceEEEEECCEEEEeecccchhccCCCCCcEEEEEEEEecCCCCeEEEEEEeCCCC
Q 044454 100 VTAG-QKFIRLHFYPSPKPGFNTSAAFFSVKAASFTLLRNFSASLAAYGNDRSPFFKEFCINIEDDQRLLNITFTPSPDY 178 (286)
Q Consensus 100 V~~G-~YlVRLHF~~~~~~~~~~~~~~FdV~in~~~ll~~fd~~~~a~~~~~~~~~kEf~v~v~~~~~~L~I~f~P~~~~ 178 (286)
++++ .|+|||||||+.......+.|.|+|+|||..+.++++.. ..+....+++++|++.+. .++.+.|+|+|...+
T Consensus 257 ~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~-~~~~~~isL~~t~~S 333 (347)
T PF12819_consen 257 VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPP--YLGADTVPYYSDYVVNVP-DSGFLNISLGPTPDS 333 (347)
T ss_pred CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCcc--cccCcceEeecceEEEec-CCCEEEEEEEeCCCC
Confidence 8887 999999999998754345579999999999877655442 112234678999999984 456899999998743
Q ss_pred CCCceeEEEEEeEEc
Q 044454 179 NDSYAFINGIEIVSM 193 (286)
Q Consensus 179 ~~~~afINaIEI~~l 193 (286)
.- .|+|||+||++|
T Consensus 334 ~l-ppiLNalEIy~v 347 (347)
T PF12819_consen 334 TL-PPILNALEIYKV 347 (347)
T ss_pred Cc-CceeEeeeeEeC
Confidence 11 599999999986
No 6
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=97.47 E-value=0.00011 Score=68.21 Aligned_cols=109 Identities=14% Similarity=0.122 Sum_probs=77.3
Q ss_pred eEEEeeCCCCCCCCCCCeeeCCCCCCCcCCC--CccccccccCCCCCCcccceeeecCCCceEEEEecC-CcEEEEEEee
Q 044454 36 NIFLACGWLGNTGPPGQTWVGDVNSQYSPHE--DASAPKSTIVTENKQVPYSKSRVSHSQFTYIFNVTA-GQKFIRLHFY 112 (286)
Q Consensus 36 ~~~InCG~~~~~d~~gr~W~~D~~~~~~~~~--~~~~~~~~~~p~~p~~~Y~TAR~f~~~~tY~fpV~~-G~YlVRLHF~ 112 (286)
.+.|||||..-+|..|.+|..|...+.-..+ +......-.....+..+|+|+|+-...|.|..|++. |.|-+=|-||
T Consensus 61 I~aVncGgdaavd~ygI~f~aD~~~~VGrasd~G~~l~i~~raeeed~ily~ter~neetFgyd~pik~dgdyalvlkfa 140 (355)
T KOG3593|consen 61 IPAVNCGGDAAVDNYGIRFAADPLEGVGRASDYGMVLGIGCRAEEEDIILYQTERYNEETFGYDVPIKEDGDYALVLKFA 140 (355)
T ss_pred hheeccCChhhhcccceEeeccccccccccCCccceeeccccCChhhhhhhhhcccchhhhcccccccCCCceehhhhHH
Confidence 4669999998888889999988642110000 100000000000234799999997667899999986 9999999999
Q ss_pred cCCCCCCCCCCceEEEEEC-CEEEEeecccchhcc
Q 044454 113 PSPKPGFNTSAAFFSVKAA-SFTLLRNFSASLAAY 146 (286)
Q Consensus 113 ~~~~~~~~~~~~~FdV~in-~~~ll~~fd~~~~a~ 146 (286)
+..|.. ...-+|+|.+| +..++++.|+....+
T Consensus 141 evyF~~--~q~kvfdvrln~sh~vVk~ldi~~~vg 173 (355)
T KOG3593|consen 141 EVYFKT--CQHKVFDVRLNCSHCVVKALDIFDQVG 173 (355)
T ss_pred HHHHHh--hhhhheeeeeccceeEEeccchhhhcC
Confidence 987764 45579999999 999999999987765
No 7
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=30.67 E-value=3e+02 Score=22.56 Aligned_cols=81 Identities=15% Similarity=0.204 Sum_probs=43.5
Q ss_pred CcEEEEEEeecCCCCCCCCCCceEEEEECCEEEEeecccchhccC---CC---CCcEEEEEE--EEecCCCCe---EEEE
Q 044454 103 GQKFIRLHFYPSPKPGFNTSAAFFSVKAASFTLLRNFSASLAAYG---ND---RSPFFKEFC--INIEDDQRL---LNIT 171 (286)
Q Consensus 103 G~YlVRLHF~~~~~~~~~~~~~~FdV~in~~~ll~~fd~~~~a~~---~~---~~~~~kEf~--v~v~~~~~~---L~I~ 171 (286)
.+|-||+.++ . ..+..+.+.+++......++...+..+ .. ...-+.|+. +.. .... +.|.
T Consensus 52 ~~YrIRiRYA---s----~~~~~~~i~~~~~~~~~~~~~~~T~~~~~~~~~~y~~F~y~~~~~~~~~--~~~~~~~~~i~ 122 (143)
T PF03944_consen 52 QKYRIRIRYA---S----NSNGTLSISINNSSGNLSFNFPSTMSNGDNLTLNYESFQYVEFPTPFTF--SSNQSITITIS 122 (143)
T ss_dssp EEEEEEEEEE---E----SS-EEEEEEETTEEEECEEEE--SSSTTGGCCETGGG-EEEEESSEEEE--STSEEEEEEEE
T ss_pred ceEEEEEEEE---E----CCCcEEEEEECCccceeeeeccccccCCCccccccceeEeeecCceEEe--cCCCceEEEEE
Confidence 4999999988 2 234578888877543214444333221 11 124556654 334 3333 5555
Q ss_pred EEeCCCCCCCceeEEEEEeEEcC
Q 044454 172 FTPSPDYNDSYAFINGIEIVSMP 194 (286)
Q Consensus 172 f~P~~~~~~~~afINaIEI~~lp 194 (286)
+.... ..+.=+|--||.+|+.
T Consensus 123 i~~~~--~~~~v~IDkIEFIPv~ 143 (143)
T PF03944_consen 123 IQNIS--SNGNVYIDKIEFIPVN 143 (143)
T ss_dssp EESST--TTS-EEEEEEEEEECT
T ss_pred EEecC--CCCeEEEEeEEEEeCC
Confidence 55433 1255689999999863
No 8
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=29.60 E-value=90 Score=20.13 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=12.7
Q ss_pred CcchhhHHHHHHHHHHhhh
Q 044454 1 METYRKIFHFFFFFFSCHH 19 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (286)
|.+||.+....++||.+.+
T Consensus 1 M~~LK~~Vy~vV~ffv~LF 19 (36)
T PF02532_consen 1 MLTLKIFVYTVVIFFVSLF 19 (36)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeehhhHHHHHHHH
Confidence 7888888888876644443
No 9
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=20.34 E-value=70 Score=30.61 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=27.0
Q ss_pred CCcccceeeecCCCceEEEEecC-CcE--EEEEEeec
Q 044454 80 KQVPYSKSRVSHSQFTYIFNVTA-GQK--FIRLHFYP 113 (286)
Q Consensus 80 p~~~Y~TAR~f~~~~tY~fpV~~-G~Y--lVRLHF~~ 113 (286)
.-+++++.|-++..++|.++|.- |+. -=|.|||+
T Consensus 58 ~~p~f~~~~r~pphl~w~~~V~~~gek~l~p~VHfCd 94 (389)
T KOG2932|consen 58 DLPVFKGIGRVPPHLTWIKPVGRRGEKQLGPRVHFCD 94 (389)
T ss_pred CCchhcccccCCCceeeeeecccccccccCcceEeec
Confidence 34688888888888999999984 754 35899996
No 10
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=19.63 E-value=98 Score=21.31 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=11.3
Q ss_pred CcchhhHHHHHHHHHHh
Q 044454 1 METYRKIFHFFFFFFSC 17 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (286)
|.+..+|+..+++|+++
T Consensus 1 Ma~ilKFvY~mIiflsl 17 (54)
T PF07127_consen 1 MAKILKFVYAMIIFLSL 17 (54)
T ss_pred CccchhhHHHHHHHHHH
Confidence 66677777777666343
Done!