BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044458
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/238 (73%), Positives = 204/238 (85%)
Query: 4 ETRMTPTQISDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQ 63
ET++TPT ISDEEANLFAMQL SASVLPM+LKSA+ELDLLE+IAKAGPGA +SP +IASQ
Sbjct: 6 ETQITPTHISDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQ 65
Query: 64 LPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNEDGVSLS 123
LPT N DA ++LDR+LRLLA Y +L CS+ T DG V+RLYGLA V K+L KNEDGVS+S
Sbjct: 66 LPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSIS 125
Query: 124 DICLLCQDKIVMESWYHLKDAVLEGGIPFNMAYGMNAFDYHGKDLRLNKIFNNGMFSHST 183
+ L+ QDK++MESWYHLKDAVL+GGIPFN AYGM AF+YHG D R NK+FN GM HST
Sbjct: 126 ALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHST 185
Query: 184 ITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAPAYP 241
ITMKK LE Y GFEGL+S+VDVGGG GA ++ I+SKYP+IKGINFDLPHVI+DAP+YP
Sbjct: 186 ITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYP 243
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 344 bits (883), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 163/238 (68%), Positives = 196/238 (82%), Gaps = 1/238 (0%)
Query: 4 ETRMTPTQISDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKA-GPGAFMSPKQIAS 62
E ++ PT SDEEANLFAMQL SA+VLPM LK+AIELD+LE++AK+ P ++SP +IA+
Sbjct: 8 EIQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAA 67
Query: 63 QLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNEDGVSL 122
QLPT N +A ++LDR+LRLLASYSV+ +L LP G VERLYGLAPVCKFLTKNEDGVSL
Sbjct: 68 QLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSL 127
Query: 123 SDICLLCQDKIVMESWYHLKDAVLEGGIPFNMAYGMNAFDYHGKDLRLNKIFNNGMFSHS 182
+ LL DK+++E W++LKDA+LEGGIPFN AYGMN FDYHG D R+NK+FN GM S+S
Sbjct: 128 APFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNS 187
Query: 183 TITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAPAY 240
TITMKK LE Y GFEGL ++VDVGGG GA MI++KYPSI INFDLPHVIQDAPA+
Sbjct: 188 TITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAF 245
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 290 bits (743), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 137/230 (59%), Positives = 182/230 (79%), Gaps = 2/230 (0%)
Query: 13 SDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTK-NSDA 71
+DE+A +FA+QL S+SVLPM LK+AIEL LLE++ AG G ++P ++A++LP+ N +A
Sbjct: 16 ADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAANPEA 74
Query: 72 HILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNEDGVSLSDICLLCQD 131
++DRILRLLASY+V+ C + DG + R YG APVCKFLT NEDGVS++ + L+ QD
Sbjct: 75 PDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQD 134
Query: 132 KIVMESWYHLKDAVLEGGIPFNMAYGMNAFDYHGKDLRLNKIFNNGMFSHSTITMKKFLE 191
K++MESWY+LKDAVL+GGIPFN AYGM+AF+YHG D R N++FN GM +HS I KK LE
Sbjct: 135 KVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLE 194
Query: 192 NYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAPAYP 241
Y GFEGL ++VDVGGG+GA++ I + YP+IKG+NFDLPHVI +AP +P
Sbjct: 195 LYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFP 244
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 209 bits (533), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 115/234 (49%), Positives = 160/234 (68%), Gaps = 6/234 (2%)
Query: 10 TQISDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGP-GAFMSPKQIASQLP--T 66
++ +++ A L AM LT+ V P VL +AI+L+L E+IAKA P GAFMSP +IAS+LP T
Sbjct: 17 SEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPAST 76
Query: 67 KNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNED-GVSLSDI 125
++SD LDR+LRLLASYSVL + T+ DGG ER+YGL+ V K+L +E G S
Sbjct: 77 QHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFT 136
Query: 126 CLLCQDKIVMESWYHLKDAVLEGGIP-FNMAYGMNAFDYHGKDLRLNKIFNNGMFSHSTI 184
LC + ++ W + K+AV++ I F +G+ +++ GKD ++N+IFN M
Sbjct: 137 TFLCYPAL-LQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCAT 195
Query: 185 TMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAP 238
MK+ LE Y GFEG+ ++VDVGGG G +L++IISKYP IKGINFDLP VI++AP
Sbjct: 196 EMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP 249
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 154/234 (65%), Gaps = 6/234 (2%)
Query: 10 TQISDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGP-GAFMSPKQIASQLP--T 66
++ +++ A L A LT+ V P VL +AI+L+L E+IAKA P GAF SP +IAS+LP T
Sbjct: 17 SEQTEDSACLSAXVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFXSPSEIASKLPAST 76
Query: 67 KNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNED-GVSLSDI 125
++SD LDR LRLLASYSVL + T+ DGG ER+YGL+ V K+L +E G S
Sbjct: 77 QHSDLPNRLDRXLRLLASYSVLTSTTRTIEDGGAERVYGLSXVGKYLVPDESRGYLASFT 136
Query: 126 CLLCQDKIVMESWYHLKDAVLEGGIP-FNMAYGMNAFDYHGKDLRLNKIFNNGMFSHSTI 184
LC + ++ W + K+AV++ I F +G+ +++ GKD + N+IFN
Sbjct: 137 TFLCYPAL-LQVWXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCAT 195
Query: 185 TMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAP 238
K+ LE Y GFEG+ ++VDVGGG G +L++IISKYP IKGINFDLP VI++AP
Sbjct: 196 EXKRXLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP 249
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 23/234 (9%)
Query: 9 PTQISDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKN 68
P++I +A L+ + A + M LK A+E+++ +I G +S Q+P+
Sbjct: 10 PSEIFKAQALLY--KHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSK 67
Query: 69 SDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNEDGVSLSDICLL 128
+ R++R LA E Y L + L + SD+CL
Sbjct: 68 IGN---VRRLMRYLAHNGFFEIITKE------EESYALTVASELLVRG------SDLCLA 112
Query: 129 CQDKIVME-----SWYHLKDAVLEGGIP-FNMAYGMNAFDYHGKDLRLNKIFNNGMFSHS 182
+ V++ S++ LK + E + F + G +D+ K+ N FN+ M S S
Sbjct: 113 PMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDS 172
Query: 183 TITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQD 236
+ + F+GL+S+VDVGGG G + +I +P +K I FD P V+++
Sbjct: 173 KLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVEN 226
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 107/229 (46%), Gaps = 8/229 (3%)
Query: 9 PTQISDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKN 68
P++I +A L+ A V M LK +IE+++ +I G +S Q+P+
Sbjct: 10 PSEIFKAQALLYKNMY--AFVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPSTK 67
Query: 69 SDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNEDGVSLSDICLL 128
D + R++R LA + + E Y L + L K + + L+ +
Sbjct: 68 VDN---VQRLMRYLAHNGFFEIITNQELENE-EEAYALTVASELLVKGTE-LCLAPMVEC 122
Query: 129 CQDKIVMESWYHLKDAVLEGGIP-FNMAYGMNAFDYHGKDLRLNKIFNNGMFSHSTITMK 187
D + S+++LK V E + F + G + +++ K+ N ++N+ + S S +
Sbjct: 123 VLDPTLSTSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMINL 182
Query: 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQD 236
+ FEGL+S+VDVGGG G + +I +P + + FD P V+++
Sbjct: 183 AMKDCNLVFEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVEN 231
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 23/234 (9%)
Query: 9 PTQISDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKN 68
P++I +A L+ + A + LK A+E ++ +I G +S Q+P+
Sbjct: 10 PSEIFKAQALLY--KHIYAFIDSXSLKWAVEXNIPNIIQNHGKPISLSNLVSILQVPSSK 67
Query: 69 SDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNEDGVSLSDICLL 128
+ R+ R LA E Y L + L + SD+CL
Sbjct: 68 IGN---VRRLXRYLAHNGFFEIITKE------EESYALTVASELLVRG------SDLCLA 112
Query: 129 CQDKIVME-----SWYHLKDAVLEGGIP-FNMAYGMNAFDYHGKDLRLNKIFNNGMFSHS 182
+ V++ S++ LK + E + F + G +D+ K+ N FN+ S S
Sbjct: 113 PXVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDS 172
Query: 183 TITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQD 236
+ + F+GL+S+VDVGGG G + +I +P +K I FD P V+++
Sbjct: 173 KLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVEN 226
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 135 MESWYHLKDAVLEGGIPFNMAYGMNAFDYHGKDLRLNKIFNNGMFSHSTITMKKFLENYK 194
+W L +V G F++A G + + +D + ++FN S S + Y
Sbjct: 140 WRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD 199
Query: 195 GFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDA 237
F G + VD+GGG G+ ++ +P ++G + P V ++A
Sbjct: 200 -FSGAATAVDIGGGRGSLXAAVLDAFPGLRGTLLERPPVAEEA 241
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 100/231 (43%), Gaps = 15/231 (6%)
Query: 15 EEANLFAMQL-----TSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNS 69
EE+ L+ Q+ V M LKSA+EL + + I G M+ ++AS L S
Sbjct: 3 EESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKP--MTLSELASSLKLHPS 60
Query: 70 DAHILLDRILRLLASYSVLNCSLHTLPDGGVERL--YGLAPVCKFLTKNEDGVSLSDICL 127
+IL R LRLL ++ +G E Y L P K L + LS I
Sbjct: 61 KVNIL-HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVK 118
Query: 128 LCQDKIVMESWYHLKDAVLEGG--IPFNMAYGMNAFDYHGKDLRLNKI--FNNGMFSHST 183
++ W K E F A G + +D+ KD + + F + M S S
Sbjct: 119 GALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSR 178
Query: 184 ITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVI 234
+ EN + FEGL+S+VDVGGG G +I +P +K FD P V+
Sbjct: 179 MFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVV 229
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 100/231 (43%), Gaps = 15/231 (6%)
Query: 15 EEANLFAMQL-----TSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNS 69
EE+ L+ Q+ V M LKSA+EL + + I G M+ ++AS L S
Sbjct: 2 EESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKP--MTLSELASSLKLHPS 59
Query: 70 DAHILLDRILRLLASYSVLNCSLHTLPDGGVERL--YGLAPVCKFLTKNEDGVSLSDICL 127
+IL R LRLL ++ +G E Y L P K L + LS I
Sbjct: 60 KVNIL-HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVK 117
Query: 128 LCQDKIVMESWYHLKDAVLEGG--IPFNMAYGMNAFDYHGKDLRLNKI--FNNGMFSHST 183
++ W K E F A G + +D+ KD + + F + M S S
Sbjct: 118 GALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSR 177
Query: 184 ITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVI 234
+ EN + FEGL+S+VDVGGG G +I +P +K FD P V+
Sbjct: 178 MFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVV 228
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 93/212 (43%), Gaps = 10/212 (4%)
Query: 29 VLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVL 88
V M LKSA+EL + + I G M+ ++AS L S +IL R LRLL
Sbjct: 18 VSSMALKSAMELGIADAIHNHGKP--MTLSELASSLKLHPSKVNIL-HRFLRLLTHNGFF 74
Query: 89 NCSLHTLPDGGVERL--YGLAPVCKFLTKNEDGVSLSDICLLCQDKIVMESWYHLKDAVL 146
++ +G E Y L P K L + LS I ++ W K
Sbjct: 75 AKTIVKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSKKWFN 133
Query: 147 EGG--IPFNMAYGMNAFDYHGKDLRLNKI--FNNGMFSHSTITMKKFLENYKGFEGLQSV 202
E F A G + +D+ KD + + F + M S S + EN + FEGL+S+
Sbjct: 134 EDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESL 193
Query: 203 VDVGGGIGASLDMIISKYPSIKGINFDLPHVI 234
VDVGGG G +I +P +K FD P V+
Sbjct: 194 VDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVV 225
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 132 KIVMESWYHLKDAVLEGGIPFNMAYGMNAFD-----YHGKDLRLNKIFNNGMFSHSTITM 186
+ W HL DAV EG + +G+ A + Y + RL F + ++
Sbjct: 111 RTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQ--FMQALQEVWSVNG 168
Query: 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAPAY 240
+ L + + D+GGG GA +S YP K FD+P V+ A +
Sbjct: 169 RSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQH 221
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 19/163 (11%)
Query: 69 SDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNEDGVSLSDICLL 128
SDA + R++RLL ++ + DG Y P L E S D+ L
Sbjct: 53 SDAE-RIHRLMRLLVAFEIFQGDTR---DG-----YANTPTSHLLRDVEG--SFRDMVLF 101
Query: 129 CQDKIVMESWYHLKDAVLEGGIPFNMAYGMNAFDYHGKDLRLNKIFNNGMFSHSTITMKK 188
++ +W +A+L G F +A+G + + Y + + F M S + +
Sbjct: 102 YGEEF-HAAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHE 159
Query: 189 F--LENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFD 229
L +++G +S VDVGGG G I+ PS +G+ D
Sbjct: 160 IPRLLDFRG----RSFVDVGGGSGELTKAILQAEPSARGVMLD 198
>pdb|3MCZ|A Chain A, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis.
pdb|3MCZ|B Chain B, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis
Length = 352
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLP 231
F ++V+D+ GG G L ++ ++P + G +DLP
Sbjct: 177 FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLP 212
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%)
Query: 41 DLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGV 100
+ + V++ G A +L N D +I D +L ++AS + S+ TL +
Sbjct: 84 EFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEA 143
Query: 101 ERLYGLAPVCKFLTKNEDG 119
+ + K + KNEDG
Sbjct: 144 TPEMRVKKIFKLMDKNEDG 162
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 171 NKIFNNGMFSHSTITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL 230
N F S++ ++ LE K +G++ ++DVGGGIG ++ +P + +L
Sbjct: 164 NLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL 222
Query: 231 PHVI 234
P I
Sbjct: 223 PGAI 226
>pdb|4FZH|A Chain A, Structure Of The Ulster Strain Newcastle Disease Virus
Hemagglutinin- Neuraminidase Reveals Auto-Inhibitory
Interactions Associated With Low Virulence
pdb|4FZH|B Chain B, Structure Of The Ulster Strain Newcastle Disease Virus
Hemagglutinin- Neuraminidase Reveals Auto-Inhibitory
Interactions Associated With Low Virulence
pdb|4FZH|C Chain C, Structure Of The Ulster Strain Newcastle Disease Virus
Hemagglutinin- Neuraminidase Reveals Auto-Inhibitory
Interactions Associated With Low Virulence
pdb|4FZH|D Chain D, Structure Of The Ulster Strain Newcastle Disease Virus
Hemagglutinin- Neuraminidase Reveals Auto-Inhibitory
Interactions Associated With Low Virulence
Length = 536
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 114 TKNEDGVSLSDICLLCQDKIVMESWYHLKDAVLEGGIPFNMAYGMNAFD--YHGKDLRLN 171
T+N S+S L C ++ ++ +P +M +G FD YH KDL +
Sbjct: 152 TQNRKSCSVSATPLGCD--MLCSKVTETEEEDYNSAVPTSMVHGRLGFDGQYHEKDLDVT 209
Query: 172 KIFNNGMFSHSTITMKKFLENYKGF 196
+F + + ++ + F++N F
Sbjct: 210 TLFEDWVANYPGVGGGSFIDNRVWF 234
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 46 IAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGV 100
I + GP +F+ K+ A QL H+L++ SY ++N +LH +P G V
Sbjct: 59 IIERGPDSFLERKKSAPQLVKDLGLEHLLVNNATG--QSYVLVNRTLHPMPKGAV 111
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 141 LKDAVLEGGIPFNMAYGMNAFDYHGKDLRLNKIFNNGMFSHSTITMKKFLENYKGFEGLQ 200
L D V G + YG ++ D+ L F+ M + + + Y + ++
Sbjct: 126 LLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVR 184
Query: 201 SVVDVGGGIGASLDMIISKYPSIKGINFDL 230
V+DVGGG G L I + P ++G +L
Sbjct: 185 HVLDVGGGNGGMLAAIALRAPHLRGTLVEL 214
>pdb|3T1E|A Chain A, The Structure Of The Newcastle Disease Virus
Hemagglutinin- Neuraminidase (Hn) Ectodomain Reveals A
4-Helix Bundle Stalk
pdb|3T1E|B Chain B, The Structure Of The Newcastle Disease Virus
Hemagglutinin- Neuraminidase (Hn) Ectodomain Reveals A
4-Helix Bundle Stalk
pdb|3T1E|E Chain E, The Structure Of The Newcastle Disease Virus
Hemagglutinin- Neuraminidase (Hn) Ectodomain Reveals A
4-Helix Bundle Stalk
pdb|3T1E|F Chain F, The Structure Of The Newcastle Disease Virus
Hemagglutinin- Neuraminidase (Hn) Ectodomain Reveals A
4-Helix Bundle Stalk
Length = 537
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 114 TKNEDGVSLSDICLLCQDKIVMESWYHLKDAVLEGGIPFNMAYGMNAFD--YHGKDLRLN 171
T+N S+S L C ++ ++ IP +M +G FD YH KDL +
Sbjct: 198 TQNRKSCSVSATPLGCD--MLCSKVTETEEEDYNSVIPTSMVHGRLGFDGQYHEKDLDVT 255
Query: 172 KIFNNGMFSHSTITMKKFLENYKGF 196
+F + + ++ + F++N F
Sbjct: 256 TLFGDWVANYPGVGGGSFIDNRVWF 280
>pdb|3AP3|A Chain A, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
pdb|3AP3|B Chain B, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
pdb|3AP3|C Chain C, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
pdb|3AP3|D Chain D, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
Length = 355
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 2 GTETRMTPTQISDEEA----NLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGA 53
G ETR+ P ++ +A ++L A V VL +A++ +LEVIAK G A
Sbjct: 75 GEETRIIPRVLAMRQAWSKSGREKLRLDEAGVTDEVLDAAMQAFILEVIAKHGEPA 130
>pdb|3AP1|A Chain A, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap And C4 Peptide
pdb|3AP1|B Chain B, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap And C4 Peptide
pdb|3AP2|A Chain A, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap,C4 Peptide, And
Phosphate Ion
pdb|3AP2|B Chain B, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap,C4 Peptide, And
Phosphate Ion
Length = 337
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 2 GTETRMTPTQISDEEA----NLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGA 53
G ETR+ P ++ +A ++L A V VL +A++ +LEVIAK G A
Sbjct: 75 GEETRIIPRVLAMRQAWSKSGREKLRLDEAGVTDEVLDAAMQAFILEVIAKHGEPA 130
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 114 TKNEDGVSLSDICLLCQDKIVMESWYHLKDAVLEGGIPFNMAYGMNAFD 162
T +G L+D L+ DK+ E W LK V++GG G ++F
Sbjct: 192 TAKVNGTPLTD--LIGTDKLTNEQWAELKQRVVKGGANIIKLRGRSSFQ 238
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Acarbose
pdb|2XFR|A Chain A, Crystal Structure Of Barley Beta-Amylase At Atomic
Resolution
pdb|2XFY|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Alpha-Cyclodextrin
pdb|2XG9|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
4-O- Alpha-D-Glucopyranosylmoranoline
pdb|2XGB|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
2,3- Epoxypropyl-Alpha-D-Glucopyranoside
pdb|2XGI|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
3,4- Epoxybutyl Alpha-D-Glucopyranoside
Length = 535
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINF 228
M F EN K F +VD+ G+G + +M YP G +F
Sbjct: 156 MTSFRENMKEFLDAGVIVDIEVGLGPAGEMRYPSYPQSHGWSF 198
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINF 228
M F EN K F +VD+ G+G + ++ YP G +F
Sbjct: 152 MTSFRENMKDFLDAGVIVDIEVGLGPAGELRYPSYPQSHGWSF 194
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 107 APVCKFLTKNEDGVSLSDICLLCQDKIVMESWYHLKDAVLEGGIPFNMAYGMNAF-DYHG 165
+P + LT NE + + IC DK++ SW D ++E P N G+ A + +
Sbjct: 89 SPSFQALTNNEANLGICRICKYGDDKLIAASW----DGLIEVIDPRNYGDGVIAVKNLNS 144
Query: 166 KDLRL-NKIF 174
+ ++ NKIF
Sbjct: 145 NNTKVKNKIF 154
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINF 228
MK F EN F ++D+ G+G + ++ YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 107 APVCKFLTKNEDGVSLSDICLLCQDKIVMESWYHLKDAVLEGGIPFNMAYGMNAF-DYHG 165
+P + LT NE + + IC DK++ SW D ++E P N G+ A + +
Sbjct: 89 SPSFQALTNNEANLGICRICKYGDDKLIAASW----DGLIEVIDPRNYGDGVIAVKNLNS 144
Query: 166 KDLRL-NKIF 174
+ ++ NKIF
Sbjct: 145 NNTKVKNKIF 154
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 107 APVCKFLTKNEDGVSLSDICLLCQDKIVMESWYHLKDAVLEGGIPFNMAYGMNAF-DYHG 165
+P + LT NE + + IC DK++ SW D ++E P N G+ A + +
Sbjct: 89 SPSFQALTNNEANLGICRICKYGDDKLIAASW----DGLIEVIDPRNYGDGVIAVKNLNS 144
Query: 166 KDLRL-NKIF 174
+ ++ NKIF
Sbjct: 145 NNTKVKNKIF 154
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 107 APVCKFLTKNEDGVSLSDICLLCQDKIVMESWYHLKDAVLEGGIPFNMAYGMNAF-DYHG 165
+P + LT NE + + IC DK++ SW D ++E P N G+ A + +
Sbjct: 89 SPSFQALTNNEANLGICRICKYGDDKLIAASW----DGLIEVIDPRNYGDGVIAVKNLNS 144
Query: 166 KDLRL-NKIF 174
+ ++ NKIF
Sbjct: 145 NNTKVKNKIF 154
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINF 228
MK F EN F ++D+ G+G + ++ YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINF 228
MK F EN F ++D+ G+G + ++ YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINF 228
MK F EN F ++D+ G+G + ++ YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINF 228
MK F EN F ++D+ G+G + ++ YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINF 228
MK F EN F ++D+ G+G + ++ YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINF 228
MK F EN F ++D+ G+G + ++ YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINF 228
MK F EN F ++D+ G+G + ++ YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,054,021
Number of Sequences: 62578
Number of extensions: 287652
Number of successful extensions: 734
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 45
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)