Query 044458
Match_columns 241
No_of_seqs 127 out of 1091
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 05:27:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p9c_A Caffeic acid O-methyltr 100.0 2E-37 6.9E-42 276.3 21.3 231 9-240 12-243 (364)
2 4a6d_A Hydroxyindole O-methylt 100.0 1.9E-38 6.6E-43 281.8 13.9 212 14-239 5-220 (353)
3 3reo_A (ISO)eugenol O-methyltr 100.0 3.4E-37 1.2E-41 275.2 20.7 231 10-240 14-245 (368)
4 3lst_A CALO1 methyltransferase 100.0 2.1E-35 7.2E-40 261.4 17.5 206 11-235 16-221 (348)
5 3gwz_A MMCR; methyltransferase 100.0 4.4E-35 1.5E-39 261.5 14.4 210 11-238 32-242 (369)
6 1zg3_A Isoflavanone 4'-O-methy 100.0 3.8E-34 1.3E-38 254.2 16.9 223 12-240 5-235 (358)
7 1fp2_A Isoflavone O-methyltran 100.0 5.2E-34 1.8E-38 252.7 17.4 218 11-240 10-230 (352)
8 1fp1_D Isoliquiritigenin 2'-O- 100.0 2.5E-33 8.7E-38 250.1 20.2 226 14-241 19-252 (372)
9 3i53_A O-methyltransferase; CO 100.0 1.7E-34 5.8E-39 253.8 11.9 202 19-238 7-209 (332)
10 2ip2_A Probable phenazine-spec 100.0 1.9E-33 6.4E-38 247.0 15.7 201 16-238 7-207 (334)
11 3dp7_A SAM-dependent methyltra 100.0 1.3E-32 4.5E-37 245.0 12.7 208 8-238 6-219 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 5.7E-32 2E-36 240.8 15.0 211 10-238 9-222 (374)
13 1tw3_A COMT, carminomycin 4-O- 100.0 2.2E-31 7.6E-36 236.0 15.0 208 13-238 15-223 (360)
14 1x19_A CRTF-related protein; m 100.0 4.2E-30 1.4E-34 228.1 16.0 198 12-238 25-230 (359)
15 2r3s_A Uncharacterized protein 100.0 5.8E-30 2E-34 224.4 14.8 195 19-238 8-205 (335)
16 3mcz_A O-methyltransferase; ad 100.0 2.3E-29 7.9E-34 222.4 12.8 201 9-238 16-219 (352)
17 2qm3_A Predicted methyltransfe 98.8 3.5E-09 1.2E-13 94.1 6.8 159 41-239 47-213 (373)
18 3dtn_A Putative methyltransfer 97.7 3.5E-05 1.2E-09 62.8 5.6 51 188-238 34-85 (234)
19 1ve3_A Hypothetical protein PH 97.7 1.1E-05 3.7E-10 65.4 1.9 39 198-238 38-77 (227)
20 4dzr_A Protein-(glutamine-N5) 97.7 3.9E-05 1.3E-09 61.3 4.9 52 188-239 20-72 (215)
21 3e05_A Precorrin-6Y C5,15-meth 97.7 3.6E-05 1.2E-09 61.7 4.5 50 188-238 31-81 (204)
22 3hm2_A Precorrin-6Y C5,15-meth 97.6 2.7E-05 9.1E-10 60.6 3.0 50 188-238 16-66 (178)
23 3ege_A Putative methyltransfer 97.6 9.8E-05 3.4E-09 61.6 6.5 52 187-241 24-76 (261)
24 2fca_A TRNA (guanine-N(7)-)-me 97.6 3.7E-05 1.3E-09 62.4 3.3 41 198-238 38-79 (213)
25 1yzh_A TRNA (guanine-N(7)-)-me 97.6 4.8E-05 1.6E-09 61.5 3.8 41 198-238 41-82 (214)
26 1jg1_A PIMT;, protein-L-isoasp 97.5 3.4E-05 1.2E-09 63.4 2.6 51 186-238 80-131 (235)
27 3g07_A 7SK snRNA methylphospha 97.5 4.5E-05 1.5E-09 65.0 3.3 43 196-238 44-87 (292)
28 1yb2_A Hypothetical protein TA 97.5 5E-05 1.7E-09 64.0 3.5 50 188-238 101-152 (275)
29 3dxy_A TRNA (guanine-N(7)-)-me 97.5 5.1E-05 1.7E-09 62.1 3.3 40 198-237 34-74 (218)
30 3vc1_A Geranyl diphosphate 2-C 97.5 0.00012 3.9E-09 62.8 5.6 64 173-238 93-157 (312)
31 4gek_A TRNA (CMO5U34)-methyltr 97.5 5.4E-05 1.8E-09 63.7 3.4 43 196-238 68-113 (261)
32 3mq2_A 16S rRNA methyltransfer 97.5 8E-05 2.7E-09 60.1 4.4 45 190-235 20-65 (218)
33 3jwh_A HEN1; methyltransferase 97.5 4.7E-05 1.6E-09 61.5 2.9 42 197-238 28-70 (217)
34 3dli_A Methyltransferase; PSI- 97.5 0.00017 5.9E-09 59.1 6.1 50 188-239 31-81 (240)
35 3ou2_A SAM-dependent methyltra 97.5 0.00016 5.4E-09 57.9 5.8 50 187-238 35-85 (218)
36 3jwg_A HEN1, methyltransferase 97.5 4.5E-05 1.5E-09 61.6 2.4 42 197-238 28-70 (219)
37 2qe6_A Uncharacterized protein 97.5 8.8E-05 3E-09 62.8 4.4 42 197-238 76-121 (274)
38 3ckk_A TRNA (guanine-N(7)-)-me 97.4 5.4E-05 1.9E-09 62.7 2.8 41 197-237 45-86 (235)
39 2p35_A Trans-aconitate 2-methy 97.4 7.6E-05 2.6E-09 61.7 3.7 50 188-238 24-74 (259)
40 3gjy_A Spermidine synthase; AP 97.4 4.7E-05 1.6E-09 66.0 2.4 40 200-239 91-131 (317)
41 1nkv_A Hypothetical protein YJ 97.4 0.00014 4.8E-09 60.0 4.8 50 187-238 26-76 (256)
42 3g5t_A Trans-aconitate 3-methy 97.4 0.00016 5.4E-09 61.4 5.2 42 197-238 35-78 (299)
43 3hem_A Cyclopropane-fatty-acyl 97.4 0.00011 3.8E-09 62.5 4.2 50 187-238 62-112 (302)
44 3mb5_A SAM-dependent methyltra 97.4 6E-05 2.1E-09 62.4 2.2 51 187-238 83-135 (255)
45 3orh_A Guanidinoacetate N-meth 97.4 4E-05 1.4E-09 63.3 1.1 40 198-238 60-100 (236)
46 3gu3_A Methyltransferase; alph 97.4 0.00013 4.4E-09 61.7 4.2 49 189-237 13-63 (284)
47 3dlc_A Putative S-adenosyl-L-m 97.4 6.5E-05 2.2E-09 60.1 2.2 49 187-238 34-83 (219)
48 3dh0_A SAM dependent methyltra 97.4 7.5E-05 2.6E-09 60.2 2.6 51 187-238 27-79 (219)
49 3mgg_A Methyltransferase; NYSG 97.3 0.00014 4.7E-09 60.9 4.2 43 196-238 35-78 (276)
50 2vdv_E TRNA (guanine-N(7)-)-me 97.3 9.3E-05 3.2E-09 61.3 3.0 41 197-237 48-89 (246)
51 3ujc_A Phosphoethanolamine N-m 97.3 0.00012 4.2E-09 60.4 3.5 50 187-238 45-95 (266)
52 1vl5_A Unknown conserved prote 97.3 0.00012 4.2E-09 60.7 3.4 51 185-238 25-76 (260)
53 3bus_A REBM, methyltransferase 97.3 0.00022 7.5E-09 59.4 4.9 50 187-238 51-101 (273)
54 1pjz_A Thiopurine S-methyltran 97.3 0.00017 5.7E-09 58.0 3.9 47 189-238 14-61 (203)
55 4dcm_A Ribosomal RNA large sub 97.3 0.00021 7.2E-09 63.3 4.8 50 188-238 213-263 (375)
56 3f4k_A Putative methyltransfer 97.3 0.00022 7.6E-09 58.8 4.6 49 189-238 37-86 (257)
57 1jsx_A Glucose-inhibited divis 97.3 8.1E-05 2.8E-09 59.5 1.8 40 199-238 66-106 (207)
58 3bkw_A MLL3908 protein, S-aden 97.3 0.00022 7.5E-09 58.2 4.4 49 188-238 34-83 (243)
59 3kkz_A Uncharacterized protein 97.2 0.0002 6.8E-09 59.7 3.9 48 190-238 38-86 (267)
60 3g89_A Ribosomal RNA small sub 97.2 0.00012 4.3E-09 61.0 2.6 43 196-238 78-121 (249)
61 3g5l_A Putative S-adenosylmeth 97.2 0.00026 9E-09 58.3 4.5 49 188-238 35-84 (253)
62 3cc8_A Putative methyltransfer 97.2 0.0002 6.8E-09 57.7 3.6 49 186-238 22-71 (230)
63 3adn_A Spermidine synthase; am 97.2 9.7E-05 3.3E-09 63.3 1.8 43 197-239 82-125 (294)
64 1fbn_A MJ fibrillarin homologu 97.2 0.00019 6.6E-09 58.6 3.5 45 191-236 68-113 (230)
65 2yxd_A Probable cobalt-precorr 97.2 0.00026 8.8E-09 54.9 4.1 48 188-238 26-74 (183)
66 2plw_A Ribosomal RNA methyltra 97.2 0.00038 1.3E-08 55.2 5.2 45 188-232 12-58 (201)
67 2esr_A Methyltransferase; stru 97.2 0.00029 9.8E-09 54.8 4.3 42 196-238 29-71 (177)
68 2ozv_A Hypothetical protein AT 97.2 0.00019 6.7E-09 60.0 3.2 43 196-238 34-77 (260)
69 1m6y_A S-adenosyl-methyltransf 97.2 0.00028 9.6E-09 60.7 4.3 52 186-238 15-67 (301)
70 3iv6_A Putative Zn-dependent a 97.2 0.00025 8.5E-09 59.8 3.7 49 187-238 35-84 (261)
71 2o57_A Putative sarcosine dime 97.1 0.00027 9.4E-09 59.7 4.0 49 187-237 68-121 (297)
72 3njr_A Precorrin-6Y methylase; 97.1 0.00028 9.7E-09 56.8 3.9 47 189-238 47-94 (204)
73 2pjd_A Ribosomal RNA small sub 97.1 0.00018 6.1E-09 62.7 2.7 51 187-238 186-237 (343)
74 3p2e_A 16S rRNA methylase; met 97.1 0.00021 7.2E-09 58.6 2.9 43 187-231 15-57 (225)
75 1i9g_A Hypothetical protein RV 97.1 0.00036 1.2E-08 58.4 4.4 70 167-238 66-141 (280)
76 1nv8_A HEMK protein; class I a 97.1 0.00018 6E-09 61.3 2.5 40 198-238 123-163 (284)
77 2b3t_A Protein methyltransfera 97.1 0.00038 1.3E-08 58.5 4.6 41 198-238 109-150 (276)
78 3ntv_A MW1564 protein; rossman 97.1 0.00018 6.1E-09 59.0 2.4 42 197-238 70-112 (232)
79 1xdz_A Methyltransferase GIDB; 97.1 0.00015 5.3E-09 59.6 2.0 43 196-238 68-111 (240)
80 4hg2_A Methyltransferase type 97.1 0.00032 1.1E-08 58.9 3.9 42 198-241 39-81 (257)
81 3mti_A RRNA methylase; SAM-dep 97.1 0.0002 6.9E-09 56.1 2.5 41 196-238 20-61 (185)
82 1kpg_A CFA synthase;, cyclopro 97.1 0.00033 1.1E-08 58.9 3.9 50 187-238 54-104 (287)
83 2pwy_A TRNA (adenine-N(1)-)-me 97.1 0.00046 1.6E-08 56.9 4.7 50 188-238 87-138 (258)
84 2fk8_A Methoxy mycolic acid sy 97.1 0.00034 1.2E-08 59.8 4.0 50 187-238 80-130 (318)
85 1iy9_A Spermidine synthase; ro 97.1 0.00015 5E-09 61.5 1.4 42 198-239 75-117 (275)
86 2h00_A Methyltransferase 10 do 97.1 0.00017 5.7E-09 59.8 1.7 41 198-238 65-106 (254)
87 1xxl_A YCGJ protein; structura 97.1 0.00037 1.3E-08 57.2 3.8 49 186-237 10-59 (239)
88 2gpy_A O-methyltransferase; st 97.0 0.00028 9.7E-09 57.6 3.0 41 198-238 54-95 (233)
89 1o54_A SAM-dependent O-methylt 97.0 0.00053 1.8E-08 57.6 4.8 51 187-238 102-154 (277)
90 2yxe_A Protein-L-isoaspartate 97.0 0.00043 1.5E-08 55.6 4.0 50 188-238 68-119 (215)
91 1xtp_A LMAJ004091AAA; SGPP, st 97.0 0.00018 6E-09 59.2 1.6 50 187-238 83-133 (254)
92 2nyu_A Putative ribosomal RNA 97.0 0.00094 3.2E-08 52.6 5.9 45 188-232 12-65 (196)
93 1dus_A MJ0882; hypothetical pr 97.0 0.00045 1.5E-08 53.9 3.8 49 187-238 42-91 (194)
94 3eey_A Putative rRNA methylase 97.0 0.0003 1E-08 55.7 2.7 43 196-238 20-64 (197)
95 3fzg_A 16S rRNA methylase; met 97.0 0.00033 1.1E-08 56.4 2.9 42 197-238 48-90 (200)
96 3duw_A OMT, O-methyltransferas 97.0 0.00031 1E-08 56.9 2.8 42 197-238 57-100 (223)
97 2xvm_A Tellurite resistance pr 97.0 0.0005 1.7E-08 54.1 4.0 48 188-238 23-71 (199)
98 2fhp_A Methylase, putative; al 97.0 0.0007 2.4E-08 52.8 4.8 42 196-238 42-84 (187)
99 3uwp_A Histone-lysine N-methyl 97.0 0.00069 2.4E-08 60.8 5.2 50 187-237 163-213 (438)
100 3ccf_A Cyclopropane-fatty-acyl 97.0 0.00047 1.6E-08 57.8 3.9 49 187-238 47-96 (279)
101 2cmg_A Spermidine synthase; tr 97.0 0.00055 1.9E-08 57.6 4.4 41 198-240 72-113 (262)
102 1o9g_A RRNA methyltransferase; 97.0 0.00033 1.1E-08 57.9 2.9 41 198-238 51-94 (250)
103 1u2z_A Histone-lysine N-methyl 97.0 0.0007 2.4E-08 61.1 5.2 49 188-237 233-282 (433)
104 3ftd_A Dimethyladenosine trans 97.0 0.00075 2.6E-08 56.3 5.1 52 186-239 20-72 (249)
105 3gnl_A Uncharacterized protein 97.0 0.00022 7.6E-09 59.5 1.8 42 197-238 20-62 (244)
106 3ggd_A SAM-dependent methyltra 97.0 0.00057 2E-08 56.0 4.3 41 196-238 54-95 (245)
107 3bkx_A SAM-dependent methyltra 97.0 0.00099 3.4E-08 55.4 5.8 43 188-231 34-77 (275)
108 2avd_A Catechol-O-methyltransf 97.0 0.0002 6.7E-09 58.2 1.4 42 197-238 68-111 (229)
109 2heo_A Z-DNA binding protein 1 97.0 0.00039 1.3E-08 46.1 2.5 55 39-107 12-66 (67)
110 3c3p_A Methyltransferase; NP_9 97.0 0.00037 1.3E-08 55.9 2.9 41 198-238 56-98 (210)
111 1qbj_A Protein (double-strande 97.0 0.00075 2.6E-08 46.5 4.0 65 37-111 10-74 (81)
112 3bwc_A Spermidine synthase; SA 97.0 0.00025 8.4E-09 60.9 1.9 43 197-239 94-137 (304)
113 3e8s_A Putative SAM dependent 96.9 0.00066 2.3E-08 54.4 4.4 48 188-238 43-91 (227)
114 3tr6_A O-methyltransferase; ce 96.9 0.00037 1.3E-08 56.4 2.8 41 198-238 64-106 (225)
115 2yqz_A Hypothetical protein TT 96.9 0.00066 2.3E-08 55.9 4.4 41 196-238 37-78 (263)
116 3e23_A Uncharacterized protein 96.9 0.00072 2.5E-08 54.1 4.3 41 196-238 41-82 (211)
117 3lec_A NADB-rossmann superfami 96.9 0.00027 9.3E-09 58.4 1.8 42 197-238 20-62 (230)
118 3tma_A Methyltransferase; thum 96.9 0.00052 1.8E-08 59.9 3.8 52 186-238 192-245 (354)
119 1xj5_A Spermidine synthase 1; 96.9 0.00024 8.3E-09 61.9 1.6 43 197-239 119-162 (334)
120 3hnr_A Probable methyltransfer 96.9 0.00044 1.5E-08 55.6 3.0 48 188-238 36-84 (220)
121 1wzn_A SAM-dependent methyltra 96.9 0.0013 4.5E-08 53.9 5.9 48 188-238 32-80 (252)
122 3tfw_A Putative O-methyltransf 96.9 0.0004 1.4E-08 57.6 2.8 42 197-238 62-105 (248)
123 1qam_A ERMC' methyltransferase 96.9 0.00082 2.8E-08 55.7 4.5 49 186-237 19-68 (244)
124 3lbf_A Protein-L-isoaspartate 96.9 0.0009 3.1E-08 53.4 4.6 48 188-238 68-116 (210)
125 3fpf_A Mtnas, putative unchara 96.9 0.00045 1.5E-08 59.3 2.9 44 196-239 120-164 (298)
126 3cgg_A SAM-dependent methyltra 96.9 0.00051 1.7E-08 53.7 3.1 47 188-238 38-85 (195)
127 1ws6_A Methyltransferase; stru 96.9 0.00043 1.5E-08 53.1 2.6 39 198-238 41-80 (171)
128 4htf_A S-adenosylmethionine-de 96.9 0.00059 2E-08 57.3 3.6 47 188-238 60-107 (285)
129 1nt2_A Fibrillarin-like PRE-rR 96.9 0.0013 4.3E-08 53.3 5.5 38 196-233 55-93 (210)
130 2bm8_A Cephalosporin hydroxyla 96.9 0.0006 2E-08 56.2 3.6 40 199-238 82-126 (236)
131 2o07_A Spermidine synthase; st 96.9 0.00026 9E-09 60.8 1.4 43 197-239 94-137 (304)
132 1uir_A Polyamine aminopropyltr 96.9 0.00028 9.4E-09 60.9 1.5 42 198-239 77-119 (314)
133 2pt6_A Spermidine synthase; tr 96.9 0.00027 9.1E-09 61.3 1.4 42 198-239 116-158 (321)
134 2b2c_A Spermidine synthase; be 96.9 0.0003 1E-08 60.8 1.6 42 198-239 108-150 (314)
135 2i7c_A Spermidine synthase; tr 96.9 0.00028 9.5E-09 60.0 1.4 43 197-239 77-120 (283)
136 3u81_A Catechol O-methyltransf 96.8 0.00048 1.6E-08 55.8 2.7 41 198-238 58-100 (221)
137 3dr5_A Putative O-methyltransf 96.8 0.00088 3E-08 54.7 4.3 40 199-238 57-98 (221)
138 3thr_A Glycine N-methyltransfe 96.8 0.0004 1.4E-08 58.5 2.3 41 196-238 55-96 (293)
139 3lpm_A Putative methyltransfer 96.8 0.00062 2.1E-08 56.6 3.4 42 196-238 46-89 (259)
140 1inl_A Spermidine synthase; be 96.8 0.00028 9.7E-09 60.3 1.3 42 198-239 90-132 (296)
141 1mjf_A Spermidine synthase; sp 96.8 0.00028 9.6E-09 59.8 1.3 41 198-239 75-116 (281)
142 3pfg_A N-methyltransferase; N, 96.8 0.00069 2.4E-08 56.2 3.7 40 197-238 49-89 (263)
143 1y0u_A Arsenical resistance op 96.8 0.00087 3E-08 47.3 3.6 62 32-111 26-87 (96)
144 1sui_A Caffeoyl-COA O-methyltr 96.8 0.00048 1.6E-08 57.2 2.6 41 198-238 79-121 (247)
145 2ipx_A RRNA 2'-O-methyltransfe 96.8 0.00062 2.1E-08 55.6 3.2 35 196-230 75-110 (233)
146 2p7i_A Hypothetical protein; p 96.8 0.00042 1.4E-08 56.4 2.2 39 198-238 42-81 (250)
147 2hnk_A SAM-dependent O-methylt 96.8 0.0012 4.1E-08 54.1 4.9 41 198-238 60-102 (239)
148 2aot_A HMT, histamine N-methyl 96.8 0.00097 3.3E-08 56.4 4.4 40 198-237 52-98 (292)
149 1l3i_A Precorrin-6Y methyltran 96.8 0.0009 3.1E-08 52.1 3.9 48 188-238 24-72 (192)
150 3i9f_A Putative type 11 methyl 96.8 0.00019 6.6E-09 55.4 -0.2 47 189-238 9-56 (170)
151 3b3j_A Histone-arginine methyl 96.8 0.0018 6.1E-08 59.2 6.1 51 186-238 147-197 (480)
152 3bgv_A MRNA CAP guanine-N7 met 96.8 0.00087 3E-08 57.2 3.8 64 171-238 9-74 (313)
153 1dl5_A Protein-L-isoaspartate 96.7 0.001 3.4E-08 57.2 4.1 50 188-238 66-117 (317)
154 1qgp_A Protein (double strande 96.7 0.00071 2.4E-08 46.1 2.5 61 38-108 15-75 (77)
155 3g2m_A PCZA361.24; SAM-depende 96.7 0.00066 2.2E-08 57.6 2.7 49 186-238 72-121 (299)
156 2b25_A Hypothetical protein; s 96.7 0.0013 4.3E-08 57.0 4.6 50 188-238 96-147 (336)
157 1vbf_A 231AA long hypothetical 96.7 0.0015 5E-08 53.0 4.6 49 187-238 60-109 (231)
158 3uzu_A Ribosomal RNA small sub 96.7 0.00066 2.3E-08 57.7 2.6 51 187-238 32-85 (279)
159 3r3h_A O-methyltransferase, SA 96.7 0.00049 1.7E-08 57.0 1.7 41 198-238 60-102 (242)
160 3ocj_A Putative exported prote 96.7 0.00033 1.1E-08 59.7 0.7 43 196-238 116-160 (305)
161 1ej0_A FTSJ; methyltransferase 96.7 0.0021 7.1E-08 49.0 5.2 45 188-232 12-57 (180)
162 3c3y_A Pfomt, O-methyltransfer 96.7 0.00074 2.5E-08 55.6 2.7 42 197-238 69-112 (237)
163 3q87_B N6 adenine specific DNA 96.7 0.0012 3.9E-08 51.5 3.7 35 199-236 24-59 (170)
164 3grz_A L11 mtase, ribosomal pr 96.7 0.00099 3.4E-08 53.0 3.3 41 197-238 59-100 (205)
165 3d2l_A SAM-dependent methyltra 96.7 0.001 3.4E-08 54.1 3.3 38 198-238 33-71 (243)
166 4e2x_A TCAB9; kijanose, tetron 96.6 0.0012 4E-08 58.8 3.8 51 186-239 96-147 (416)
167 1zx0_A Guanidinoacetate N-meth 96.6 0.00057 1.9E-08 55.9 1.6 41 197-238 59-100 (236)
168 2nxc_A L11 mtase, ribosomal pr 96.6 0.00073 2.5E-08 56.3 2.3 40 197-238 119-159 (254)
169 1xmk_A Double-stranded RNA-spe 96.6 0.00099 3.4E-08 45.7 2.5 61 38-111 12-73 (79)
170 3sm3_A SAM-dependent methyltra 96.6 0.001 3.5E-08 53.6 3.1 40 197-238 29-69 (235)
171 2pbf_A Protein-L-isoaspartate 96.6 0.0018 6.2E-08 52.4 4.5 43 196-238 78-126 (227)
172 2pxx_A Uncharacterized protein 96.6 0.00075 2.6E-08 53.7 2.1 41 197-238 41-82 (215)
173 1p91_A Ribosomal RNA large sub 96.6 0.00073 2.5E-08 56.2 2.1 41 197-237 84-125 (269)
174 4fsd_A Arsenic methyltransfera 96.6 0.00089 3.1E-08 59.1 2.7 41 198-238 83-125 (383)
175 1yub_A Ermam, rRNA methyltrans 96.6 0.00087 3E-08 55.4 2.4 51 186-239 18-69 (245)
176 3l8d_A Methyltransferase; stru 96.6 0.0015 5.3E-08 53.0 3.9 41 197-239 52-93 (242)
177 3b73_A PHIH1 repressor-like pr 96.6 0.0015 5.2E-08 47.7 3.4 64 38-116 14-79 (111)
178 3cbg_A O-methyltransferase; cy 96.6 0.001 3.5E-08 54.5 2.7 40 199-238 73-114 (232)
179 3a27_A TYW2, uncharacterized p 96.6 0.00084 2.9E-08 56.5 2.3 43 196-238 117-160 (272)
180 3m70_A Tellurite resistance pr 96.5 0.001 3.4E-08 55.9 2.6 48 188-238 111-159 (286)
181 2fyt_A Protein arginine N-meth 96.5 0.0016 5.5E-08 56.7 4.0 49 188-238 55-103 (340)
182 3dou_A Ribosomal RNA large sub 96.5 0.002 6.8E-08 51.3 4.2 44 186-231 13-56 (191)
183 3h2b_A SAM-dependent methyltra 96.5 0.00097 3.3E-08 52.9 2.4 38 199-238 42-80 (203)
184 2yvl_A TRMI protein, hypotheti 96.5 0.0025 8.4E-08 52.1 4.9 48 188-238 82-130 (248)
185 3p9n_A Possible methyltransfer 96.5 0.0013 4.4E-08 51.8 3.1 40 198-238 44-84 (189)
186 2gb4_A Thiopurine S-methyltran 96.5 0.00089 3E-08 55.9 2.1 40 197-238 67-107 (252)
187 1g8a_A Fibrillarin-like PRE-rR 96.5 0.0011 3.7E-08 53.8 2.6 40 196-235 71-112 (227)
188 3m33_A Uncharacterized protein 96.5 0.0011 3.7E-08 53.9 2.5 40 197-238 47-87 (226)
189 3bxo_A N,N-dimethyltransferase 96.5 0.0011 3.7E-08 53.8 2.4 40 197-238 39-79 (239)
190 4azs_A Methyltransferase WBDD; 96.5 0.00081 2.8E-08 62.7 1.8 39 198-238 66-105 (569)
191 1zq9_A Probable dimethyladenos 96.5 0.0017 5.7E-08 55.2 3.6 49 186-237 17-66 (285)
192 2ex4_A Adrenal gland protein A 96.5 0.0009 3.1E-08 54.8 1.9 40 198-238 79-119 (241)
193 1ne2_A Hypothetical protein TA 96.4 0.0012 4.2E-08 52.3 2.4 42 196-238 49-91 (200)
194 3lcc_A Putative methyl chlorid 96.4 0.0011 3.9E-08 53.9 2.1 37 200-238 68-105 (235)
195 1qyr_A KSGA, high level kasuga 96.4 0.0025 8.6E-08 53.2 4.2 51 186-239 10-61 (252)
196 3evz_A Methyltransferase; NYSG 96.4 0.0015 5.1E-08 52.9 2.7 42 196-238 53-96 (230)
197 1y8c_A S-adenosylmethionine-de 96.4 0.0018 6.1E-08 52.6 3.1 39 198-238 37-76 (246)
198 3tqs_A Ribosomal RNA small sub 96.4 0.0014 4.9E-08 54.9 2.5 49 186-237 18-67 (255)
199 2ift_A Putative methylase HI07 96.4 0.0014 4.7E-08 52.4 2.3 39 199-238 54-93 (201)
200 3fut_A Dimethyladenosine trans 96.4 0.002 7E-08 54.4 3.4 47 187-237 37-84 (271)
201 3gru_A Dimethyladenosine trans 96.3 0.0028 9.6E-08 54.2 4.1 49 186-237 39-88 (295)
202 1i1n_A Protein-L-isoaspartate 96.3 0.0018 6.2E-08 52.3 2.8 43 196-238 75-119 (226)
203 3ofk_A Nodulation protein S; N 96.3 0.0013 4.5E-08 52.6 1.9 41 196-238 49-90 (216)
204 2fpo_A Methylase YHHF; structu 96.3 0.0016 5.6E-08 52.1 2.3 39 199-238 55-94 (202)
205 3tm4_A TRNA (guanine N2-)-meth 96.3 0.0018 6.1E-08 57.1 2.7 43 196-238 215-258 (373)
206 3mq0_A Transcriptional repress 96.3 0.002 6.9E-08 54.5 2.9 58 39-110 32-89 (275)
207 3gdh_A Trimethylguanosine synt 96.3 0.0018 6.2E-08 52.8 2.5 39 198-238 78-117 (241)
208 2frn_A Hypothetical protein PH 96.2 0.0017 5.7E-08 54.9 2.2 41 197-238 124-165 (278)
209 1wy7_A Hypothetical protein PH 96.2 0.0022 7.5E-08 51.0 2.9 41 197-238 48-89 (207)
210 2kw5_A SLR1183 protein; struct 96.2 0.0017 6E-08 51.3 2.1 36 201-238 32-68 (202)
211 2qfm_A Spermine synthase; sper 96.2 0.0016 5.6E-08 57.2 2.0 42 198-240 188-230 (364)
212 3bzb_A Uncharacterized protein 96.2 0.003 1E-07 53.3 3.5 41 197-238 78-120 (281)
213 2h1r_A Dimethyladenosine trans 96.2 0.0021 7E-08 55.0 2.4 50 186-238 31-81 (299)
214 2ih2_A Modification methylase 96.1 0.0043 1.5E-07 54.9 4.6 49 188-237 30-80 (421)
215 2y1w_A Histone-arginine methyl 96.1 0.0028 9.6E-08 55.2 3.3 48 188-237 41-88 (348)
216 3q7e_A Protein arginine N-meth 96.1 0.0022 7.6E-08 56.0 2.4 40 198-238 66-105 (349)
217 2avn_A Ubiquinone/menaquinone 96.1 0.0023 8E-08 53.0 2.4 39 198-238 54-93 (260)
218 3opn_A Putative hemolysin; str 96.1 0.0089 3.1E-07 49.1 5.9 46 188-235 27-74 (232)
219 1r18_A Protein-L-isoaspartate( 96.1 0.0026 9E-08 51.5 2.7 43 196-238 82-131 (227)
220 1ixk_A Methyltransferase; open 96.1 0.0038 1.3E-07 53.7 3.8 64 173-237 94-159 (315)
221 1ri5_A MRNA capping enzyme; me 96.1 0.004 1.4E-07 52.1 3.7 41 197-238 63-104 (298)
222 2k02_A Ferrous iron transport 96.1 0.0049 1.7E-07 42.9 3.5 43 42-91 7-49 (87)
223 3pqk_A Biofilm growth-associat 96.0 0.0061 2.1E-07 43.2 4.0 63 33-108 19-81 (102)
224 2y75_A HTH-type transcriptiona 96.0 0.011 3.7E-07 43.8 5.6 57 42-108 14-70 (129)
225 1xn7_A Hypothetical protein YH 96.0 0.0052 1.8E-07 41.9 3.4 43 42-91 7-49 (78)
226 3htx_A HEN1; HEN1, small RNA m 95.9 0.0027 9.3E-08 61.5 2.1 41 198-238 721-763 (950)
227 3ajd_A Putative methyltransfer 95.9 0.0035 1.2E-07 52.7 2.6 46 191-237 77-124 (274)
228 1g6q_1 HnRNP arginine N-methyl 95.9 0.0024 8.2E-08 55.2 1.6 39 198-237 38-76 (328)
229 2oqg_A Possible transcriptiona 95.9 0.0061 2.1E-07 43.9 3.4 47 37-91 21-67 (114)
230 3jth_A Transcription activator 95.8 0.0039 1.3E-07 43.9 2.2 64 32-108 18-81 (98)
231 2xrn_A HTH-type transcriptiona 95.8 0.0058 2E-07 50.5 3.6 59 40-111 9-67 (241)
232 4df3_A Fibrillarin-like rRNA/T 95.8 0.0038 1.3E-07 51.6 2.4 41 196-236 75-117 (233)
233 2vdw_A Vaccinia virus capping 95.7 0.0032 1.1E-07 53.9 1.8 41 198-239 48-89 (302)
234 4a5n_A Uncharacterized HTH-typ 95.7 0.02 6.9E-07 42.9 6.0 79 17-114 15-94 (131)
235 1mkm_A ICLR transcriptional re 95.7 0.0083 2.8E-07 49.7 4.3 58 39-110 10-67 (249)
236 2p8j_A S-adenosylmethionine-de 95.7 0.003 1E-07 50.1 1.4 41 197-238 22-63 (209)
237 3giw_A Protein of unknown func 95.7 0.0062 2.1E-07 51.6 3.4 42 198-239 78-123 (277)
238 2fsw_A PG_0823 protein; alpha- 95.7 0.012 4.1E-07 42.2 4.4 89 6-113 3-92 (107)
239 3frh_A 16S rRNA methylase; met 95.6 0.005 1.7E-07 51.3 2.5 40 196-238 103-143 (253)
240 1oyi_A Double-stranded RNA-bin 95.6 0.0074 2.5E-07 41.5 3.0 59 38-110 18-76 (82)
241 2oxt_A Nucleoside-2'-O-methylt 95.6 0.0075 2.6E-07 50.7 3.6 35 196-233 72-106 (265)
242 2kko_A Possible transcriptiona 95.6 0.0047 1.6E-07 44.5 1.9 46 38-91 26-71 (108)
243 2wa2_A Non-structural protein 95.6 0.0074 2.5E-07 51.0 3.4 35 196-233 80-114 (276)
244 3o4f_A Spermidine synthase; am 95.6 0.0047 1.6E-07 52.8 2.1 44 197-240 82-126 (294)
245 3f6o_A Probable transcriptiona 95.6 0.0059 2E-07 44.6 2.5 64 32-108 13-76 (118)
246 3r0q_C Probable protein argini 95.5 0.0066 2.2E-07 53.5 3.0 41 196-237 61-101 (376)
247 1r7j_A Conserved hypothetical 95.5 0.0071 2.4E-07 42.8 2.5 47 55-114 21-67 (95)
248 1u2w_A CADC repressor, cadmium 95.5 0.01 3.5E-07 43.7 3.5 54 31-91 36-89 (122)
249 3ldu_A Putative methylase; str 95.4 0.011 3.7E-07 52.4 4.1 52 186-238 184-274 (385)
250 2zfu_A Nucleomethylin, cerebra 95.4 0.016 5.4E-07 46.2 4.7 38 188-230 57-94 (215)
251 1af7_A Chemotaxis receptor met 95.4 0.0048 1.6E-07 52.2 1.6 40 199-238 106-154 (274)
252 3cuo_A Uncharacterized HTH-typ 95.4 0.0068 2.3E-07 42.3 2.2 51 34-91 21-71 (99)
253 3t8r_A Staphylococcus aureus C 95.4 0.022 7.7E-07 43.2 5.2 46 53-108 27-72 (143)
254 2jt1_A PEFI protein; solution 95.4 0.0086 2.9E-07 40.7 2.5 44 42-91 9-57 (77)
255 2g7u_A Transcriptional regulat 95.3 0.0049 1.7E-07 51.4 1.5 60 40-114 17-76 (257)
256 2g72_A Phenylethanolamine N-me 95.3 0.0022 7.4E-08 54.0 -0.7 40 198-238 71-111 (289)
257 2hzt_A Putative HTH-type trans 95.3 0.012 4.2E-07 42.2 3.4 74 19-111 5-79 (107)
258 1uwv_A 23S rRNA (uracil-5-)-me 95.3 0.008 2.7E-07 54.0 2.7 48 188-238 277-325 (433)
259 1r1u_A CZRA, repressor protein 95.3 0.01 3.4E-07 42.5 2.7 46 38-91 27-72 (106)
260 3lcv_B Sisomicin-gentamicin re 95.3 0.0014 4.8E-08 55.3 -2.1 41 197-237 131-172 (281)
261 3k0b_A Predicted N6-adenine-sp 95.2 0.013 4.6E-07 52.0 4.1 52 186-238 190-280 (393)
262 1wg8_A Predicted S-adenosylmet 95.2 0.013 4.5E-07 49.7 3.7 50 186-238 11-61 (285)
263 3r4k_A Transcriptional regulat 95.2 0.0034 1.2E-07 52.6 -0.0 58 40-110 9-66 (260)
264 2gs9_A Hypothetical protein TT 95.2 0.0071 2.4E-07 48.0 1.9 36 198-238 36-73 (211)
265 2jsc_A Transcriptional regulat 95.2 0.0098 3.4E-07 43.5 2.5 52 32-91 16-67 (118)
266 1vlm_A SAM-dependent methyltra 95.2 0.0063 2.2E-07 48.9 1.6 33 199-237 48-81 (219)
267 3boq_A Transcriptional regulat 95.1 0.02 6.9E-07 43.4 4.3 47 39-91 49-95 (160)
268 3lwf_A LIN1550 protein, putati 95.1 0.017 5.8E-07 44.8 3.8 46 53-108 43-88 (159)
269 2i62_A Nicotinamide N-methyltr 95.0 0.0019 6.5E-08 53.2 -1.9 40 197-237 55-95 (265)
270 3dmg_A Probable ribosomal RNA 95.0 0.0068 2.3E-07 53.6 1.5 39 198-238 233-272 (381)
271 3hp7_A Hemolysin, putative; st 95.0 0.035 1.2E-06 47.3 5.9 46 187-234 74-121 (291)
272 2htj_A P fimbrial regulatory p 95.0 0.015 5.2E-07 39.4 3.0 44 40-90 3-46 (81)
273 2igt_A SAM dependent methyltra 95.0 0.01 3.5E-07 51.4 2.6 39 198-238 153-192 (332)
274 2yxl_A PH0851 protein, 450AA l 94.9 0.015 5.3E-07 52.4 3.6 64 172-236 234-299 (450)
275 2ia2_A Putative transcriptiona 94.9 0.0055 1.9E-07 51.4 0.6 57 40-111 24-80 (265)
276 3df8_A Possible HXLR family tr 94.9 0.013 4.5E-07 42.4 2.5 74 18-114 17-93 (111)
277 2r6z_A UPF0341 protein in RSP 94.9 0.011 3.8E-07 49.4 2.3 34 196-231 81-115 (258)
278 3ech_A MEXR, multidrug resista 94.8 0.083 2.8E-06 39.1 6.8 48 37-91 37-84 (142)
279 3ldg_A Putative uncharacterize 94.7 0.022 7.6E-07 50.4 4.1 36 186-222 183-218 (384)
280 4hc4_A Protein arginine N-meth 94.7 0.0097 3.3E-07 52.6 1.6 38 199-237 84-121 (376)
281 3f6v_A Possible transcriptiona 94.7 0.012 4.1E-07 45.2 1.9 68 29-109 50-117 (151)
282 1on2_A Transcriptional regulat 94.6 0.023 8E-07 42.4 3.4 49 53-113 21-69 (142)
283 2o0y_A Transcriptional regulat 94.6 0.0091 3.1E-07 49.9 1.1 57 40-110 26-82 (260)
284 1sqg_A SUN protein, FMU protei 94.6 0.0096 3.3E-07 53.3 1.3 48 188-236 237-285 (429)
285 2fa5_A Transcriptional regulat 94.6 0.064 2.2E-06 40.6 5.9 46 39-91 51-96 (162)
286 2f8l_A Hypothetical protein LM 94.5 0.0098 3.3E-07 51.6 1.2 41 198-238 130-176 (344)
287 1ylf_A RRF2 family protein; st 94.4 0.027 9.3E-07 42.9 3.3 61 31-109 14-74 (149)
288 2a14_A Indolethylamine N-methy 94.4 0.0033 1.1E-07 52.3 -2.2 40 198-238 55-95 (263)
289 1tbx_A ORF F-93, hypothetical 94.3 0.019 6.6E-07 40.2 2.2 63 39-113 10-76 (99)
290 2dul_A N(2),N(2)-dimethylguano 94.3 0.021 7.2E-07 50.4 2.7 40 199-238 48-88 (378)
291 2h09_A Transcriptional regulat 94.2 0.023 7.9E-07 43.2 2.6 55 42-111 45-99 (155)
292 2wte_A CSA3; antiviral protein 94.2 0.021 7.3E-07 47.3 2.5 62 38-113 153-214 (244)
293 3r0a_A Putative transcriptiona 94.2 0.021 7.1E-07 42.1 2.2 47 39-91 28-75 (123)
294 1r1t_A Transcriptional repress 94.2 0.021 7.3E-07 42.0 2.2 47 37-91 46-92 (122)
295 1z7u_A Hypothetical protein EF 94.1 0.019 6.6E-07 41.5 1.9 78 16-112 10-88 (112)
296 3bdd_A Regulatory protein MARR 94.1 0.043 1.5E-06 40.4 3.9 68 38-114 32-99 (142)
297 2f2e_A PA1607; transcription f 94.1 0.03 1E-06 42.6 3.0 74 19-112 15-88 (146)
298 3k69_A Putative transcription 94.1 0.066 2.2E-06 41.5 5.0 46 53-108 27-72 (162)
299 1ub9_A Hypothetical protein PH 94.1 0.028 9.4E-07 39.1 2.6 71 32-111 11-81 (100)
300 2fu4_A Ferric uptake regulatio 94.1 0.016 5.4E-07 39.4 1.2 48 39-91 19-71 (83)
301 3jw4_A Transcriptional regulat 94.0 0.12 4.2E-06 38.4 6.3 48 39-91 43-90 (148)
302 3c6k_A Spermine synthase; sper 94.0 0.02 6.8E-07 50.6 2.0 42 198-240 205-247 (381)
303 3k6r_A Putative transferase PH 93.9 0.019 6.6E-07 48.6 1.7 42 196-238 123-165 (278)
304 3id6_C Fibrillarin-like rRNA/T 93.9 0.065 2.2E-06 44.0 4.9 37 196-232 74-112 (232)
305 1sfx_A Conserved hypothetical 93.9 0.033 1.1E-06 39.1 2.7 47 38-91 21-67 (109)
306 3m6w_A RRNA methylase; rRNA me 93.9 0.027 9.4E-07 51.1 2.7 47 190-237 94-142 (464)
307 1yyv_A Putative transcriptiona 93.7 0.022 7.4E-07 42.6 1.5 78 17-113 24-102 (131)
308 2x4h_A Hypothetical protein SS 93.6 0.038 1.3E-06 41.0 2.8 46 53-111 30-75 (139)
309 2okc_A Type I restriction enzy 93.6 0.029 9.8E-07 50.5 2.4 49 188-237 162-224 (445)
310 4dmg_A Putative uncharacterize 93.6 0.028 9.6E-07 49.9 2.3 38 199-238 215-253 (393)
311 2jjq_A Uncharacterized RNA met 93.6 0.038 1.3E-06 49.6 3.1 39 198-238 290-329 (425)
312 2p41_A Type II methyltransfera 93.5 0.042 1.4E-06 47.0 3.2 32 196-230 80-111 (305)
313 2oyr_A UPF0341 protein YHIQ; a 93.5 0.055 1.9E-06 45.2 3.8 43 188-233 77-122 (258)
314 3bja_A Transcriptional regulat 93.5 0.039 1.3E-06 40.5 2.6 47 38-91 34-80 (139)
315 3fm5_A Transcriptional regulat 93.5 0.033 1.1E-06 41.8 2.2 48 38-91 40-87 (150)
316 2nyx_A Probable transcriptiona 93.4 0.13 4.4E-06 39.4 5.6 67 38-113 46-112 (168)
317 2hr3_A Probable transcriptiona 93.4 0.061 2.1E-06 40.0 3.6 48 37-91 35-83 (147)
318 2lnb_A Z-DNA-binding protein 1 93.4 0.046 1.6E-06 36.8 2.5 47 38-90 20-66 (80)
319 2yx1_A Hypothetical protein MJ 93.3 0.029 9.9E-07 48.5 1.9 39 197-238 194-233 (336)
320 3ll7_A Putative methyltransfer 93.3 0.037 1.3E-06 49.4 2.6 38 199-238 94-132 (410)
321 2as0_A Hypothetical protein PH 93.3 0.04 1.4E-06 48.6 2.8 40 198-238 217-257 (396)
322 2b78_A Hypothetical protein SM 93.2 0.033 1.1E-06 49.1 2.1 41 197-238 211-252 (385)
323 1xd7_A YWNA; structural genomi 93.2 0.13 4.3E-06 38.9 5.1 42 56-108 25-66 (145)
324 1wxx_A TT1595, hypothetical pr 93.1 0.031 1.1E-06 49.2 1.8 39 198-238 209-248 (382)
325 3bro_A Transcriptional regulat 93.1 0.053 1.8E-06 39.9 2.8 48 39-91 36-83 (141)
326 3bpv_A Transcriptional regulat 93.0 0.041 1.4E-06 40.4 2.1 47 38-91 30-76 (138)
327 2bv6_A MGRA, HTH-type transcri 93.0 0.041 1.4E-06 40.7 2.1 47 38-91 38-84 (142)
328 3g3z_A NMB1585, transcriptiona 93.0 0.074 2.5E-06 39.5 3.5 66 38-112 32-97 (145)
329 3cjn_A Transcriptional regulat 93.0 0.16 5.4E-06 38.4 5.5 47 38-91 53-99 (162)
330 3bt7_A TRNA (uracil-5-)-methyl 92.9 0.072 2.5E-06 46.6 3.8 37 200-238 215-252 (369)
331 3c0k_A UPF0064 protein YCCW; P 92.9 0.037 1.3E-06 48.8 1.9 40 198-238 220-260 (396)
332 2gxg_A 146AA long hypothetical 92.8 0.067 2.3E-06 39.6 3.1 46 38-91 38-83 (146)
333 2rdp_A Putative transcriptiona 92.8 0.27 9.2E-06 36.4 6.5 46 39-91 44-89 (150)
334 3oop_A LIN2960 protein; protei 92.7 0.05 1.7E-06 40.3 2.2 47 38-91 38-84 (143)
335 2pex_A Transcriptional regulat 92.6 0.05 1.7E-06 40.9 2.1 67 39-114 49-115 (153)
336 2cfx_A HTH-type transcriptiona 92.6 0.081 2.8E-06 39.8 3.3 46 38-90 6-51 (144)
337 3v97_A Ribosomal RNA large sub 92.6 0.085 2.9E-06 50.3 4.1 33 186-219 179-211 (703)
338 1jgs_A Multiple antibiotic res 92.6 0.047 1.6E-06 40.1 1.9 46 39-91 36-81 (138)
339 2pn6_A ST1022, 150AA long hypo 92.5 0.079 2.7E-06 40.0 3.1 47 38-91 4-50 (150)
340 2w25_A Probable transcriptiona 92.5 0.083 2.8E-06 39.9 3.2 47 38-91 8-54 (150)
341 2fbh_A Transcriptional regulat 92.5 0.066 2.2E-06 39.6 2.6 46 39-91 39-85 (146)
342 3sso_A Methyltransferase; macr 92.4 0.07 2.4E-06 47.6 3.1 33 198-230 216-255 (419)
343 3gcz_A Polyprotein; flavivirus 92.4 0.1 3.6E-06 44.0 3.9 44 186-230 79-122 (282)
344 3bj6_A Transcriptional regulat 92.4 0.055 1.9E-06 40.4 2.1 46 39-91 42-87 (152)
345 3m4x_A NOL1/NOP2/SUN family pr 92.4 0.05 1.7E-06 49.3 2.1 48 189-237 97-146 (456)
346 1z91_A Organic hydroperoxide r 92.4 0.051 1.8E-06 40.4 1.9 70 38-116 41-110 (147)
347 3tgn_A ADC operon repressor AD 92.2 0.1 3.5E-06 38.7 3.4 46 38-91 39-84 (146)
348 2lkp_A Transcriptional regulat 92.2 0.07 2.4E-06 38.6 2.4 47 37-91 32-78 (119)
349 2nnn_A Probable transcriptiona 92.2 0.1 3.4E-06 38.3 3.3 47 38-91 39-85 (140)
350 1q1h_A TFE, transcription fact 92.1 0.08 2.7E-06 37.8 2.6 47 39-91 20-66 (110)
351 2vn2_A DNAD, chromosome replic 92.0 0.11 3.9E-06 38.4 3.4 34 54-91 51-84 (128)
352 2p5v_A Transcriptional regulat 92.0 0.1 3.5E-06 40.0 3.2 47 38-91 11-57 (162)
353 3k0l_A Repressor protein; heli 92.0 0.33 1.1E-05 36.7 6.1 64 39-111 48-111 (162)
354 3kp7_A Transcriptional regulat 91.8 0.51 1.8E-05 35.0 7.0 44 39-90 40-83 (151)
355 1sfu_A 34L protein; protein/Z- 91.8 0.25 8.7E-06 33.1 4.5 35 53-91 28-62 (75)
356 2cyy_A Putative HTH-type trans 91.8 0.094 3.2E-06 39.7 2.8 47 38-91 8-54 (151)
357 1s3j_A YUSO protein; structura 91.8 0.23 7.9E-06 37.0 5.0 46 39-91 39-84 (155)
358 2dbb_A Putative HTH-type trans 91.8 0.12 4E-06 39.1 3.3 46 38-90 10-55 (151)
359 2zkz_A Transcriptional repress 91.7 0.069 2.4E-06 37.6 1.8 47 37-91 27-73 (99)
360 3tka_A Ribosomal RNA small sub 91.6 0.22 7.4E-06 43.3 5.1 52 186-238 46-99 (347)
361 2dk5_A DNA-directed RNA polyme 91.6 0.12 4.1E-06 36.0 2.9 48 39-91 22-69 (91)
362 2e1c_A Putative HTH-type trans 91.6 0.13 4.5E-06 40.0 3.5 46 38-90 28-73 (171)
363 2frx_A Hypothetical protein YE 91.4 0.11 3.9E-06 47.2 3.3 40 198-237 117-158 (479)
364 3nrv_A Putative transcriptiona 91.4 0.12 4.1E-06 38.4 2.9 47 38-91 41-87 (148)
365 2ia0_A Putative HTH-type trans 91.3 0.13 4.5E-06 40.0 3.2 46 38-90 18-63 (171)
366 1i1g_A Transcriptional regulat 91.3 0.12 4E-06 38.5 2.8 45 39-90 6-50 (141)
367 3i4p_A Transcriptional regulat 91.3 0.13 4.4E-06 39.5 3.1 46 38-90 4-49 (162)
368 2p4w_A Transcriptional regulat 91.2 0.16 5.5E-06 40.7 3.7 72 32-111 10-81 (202)
369 2xvc_A ESCRT-III, SSO0910; cel 91.1 0.097 3.3E-06 33.0 1.8 46 39-90 12-57 (59)
370 3u2r_A Regulatory protein MARR 91.1 0.53 1.8E-05 35.8 6.5 69 38-113 47-115 (168)
371 2qvo_A Uncharacterized protein 91.1 0.094 3.2E-06 36.4 1.9 51 54-113 30-80 (95)
372 2k4b_A Transcriptional regulat 91.1 0.093 3.2E-06 37.2 1.9 50 39-91 37-86 (99)
373 1uly_A Hypothetical protein PH 91.0 0.15 5.3E-06 40.5 3.4 52 32-91 15-66 (192)
374 3cdh_A Transcriptional regulat 91.0 0.14 4.7E-06 38.4 3.0 64 39-111 45-108 (155)
375 2zig_A TTHA0409, putative modi 91.0 0.093 3.2E-06 44.4 2.2 48 187-238 226-274 (297)
376 2frh_A SARA, staphylococcal ac 91.0 0.14 4.7E-06 37.5 2.8 66 39-111 39-104 (127)
377 2cg4_A Regulatory protein ASNC 90.9 0.12 4.1E-06 39.1 2.5 46 38-90 9-54 (152)
378 2b9e_A NOL1/NOP2/SUN domain fa 90.9 0.12 4.2E-06 44.2 2.8 45 192-237 97-143 (309)
379 3eco_A MEPR; mutlidrug efflux 90.8 0.12 4E-06 38.0 2.4 49 38-91 32-80 (139)
380 3s2w_A Transcriptional regulat 90.8 0.36 1.2E-05 36.3 5.2 45 40-91 53-97 (159)
381 3e6m_A MARR family transcripti 90.8 0.24 8.3E-06 37.4 4.2 46 39-91 55-100 (161)
382 2eth_A Transcriptional regulat 90.6 0.18 6.1E-06 37.8 3.3 48 37-91 44-91 (154)
383 4gqb_A Protein arginine N-meth 90.6 0.17 5.8E-06 47.6 3.8 64 160-230 323-393 (637)
384 3evf_A RNA-directed RNA polyme 90.6 0.2 7E-06 42.1 3.9 37 187-224 64-100 (277)
385 2d1h_A ST1889, 109AA long hypo 90.5 0.15 5.1E-06 35.6 2.6 35 53-91 35-69 (109)
386 2fbi_A Probable transcriptiona 90.5 0.14 4.7E-06 37.6 2.6 47 38-91 37-83 (142)
387 1p6r_A Penicillinase repressor 90.5 0.086 3E-06 35.5 1.3 51 38-91 10-60 (82)
388 2pg4_A Uncharacterized protein 90.5 0.14 4.8E-06 35.4 2.4 60 42-111 20-80 (95)
389 2a61_A Transcriptional regulat 90.5 0.15 5E-06 37.6 2.7 47 38-91 34-80 (145)
390 4hbl_A Transcriptional regulat 90.4 0.2 6.8E-06 37.4 3.4 47 38-91 42-88 (149)
391 2fe3_A Peroxide operon regulat 90.4 0.35 1.2E-05 36.4 4.7 47 39-91 24-75 (145)
392 4g6q_A Putative uncharacterize 90.4 0.52 1.8E-05 36.9 5.9 73 33-113 19-92 (182)
393 3ua3_A Protein arginine N-meth 90.2 0.25 8.4E-06 47.1 4.4 49 160-215 378-426 (745)
394 2obp_A Putative DNA-binding pr 90.2 0.17 5.6E-06 35.8 2.5 51 53-111 35-85 (96)
395 3hrs_A Metalloregulator SCAR; 90.1 0.17 5.8E-06 40.8 2.9 50 53-114 19-68 (214)
396 4aik_A Transcriptional regulat 90.0 0.28 9.5E-06 37.0 3.9 46 40-91 34-79 (151)
397 3f3x_A Transcriptional regulat 89.9 0.12 4.1E-06 38.2 1.8 64 38-111 38-101 (144)
398 3u1d_A Uncharacterized protein 89.9 0.97 3.3E-05 34.5 6.8 90 9-112 10-103 (151)
399 2qlz_A Transcription factor PF 89.8 0.11 3.6E-06 42.8 1.5 52 31-90 6-57 (232)
400 2fxa_A Protease production reg 89.8 0.11 3.6E-06 41.7 1.4 66 39-113 50-115 (207)
401 3hsr_A HTH-type transcriptiona 89.8 0.37 1.3E-05 35.5 4.4 63 40-111 39-101 (140)
402 3b5i_A S-adenosyl-L-methionine 89.8 0.17 6E-06 44.5 2.9 35 198-232 52-101 (374)
403 2qww_A Transcriptional regulat 89.6 0.15 5.1E-06 38.1 2.1 65 38-111 42-108 (154)
404 2o03_A Probable zinc uptake re 89.5 0.23 7.7E-06 36.8 3.0 49 37-91 11-64 (131)
405 3k2z_A LEXA repressor; winged 89.1 0.29 1E-05 38.7 3.6 42 44-91 16-57 (196)
406 1bja_A Transcription regulator 89.1 0.34 1.2E-05 34.0 3.5 60 39-114 18-78 (95)
407 1ku9_A Hypothetical protein MJ 89.1 0.18 6.1E-06 37.2 2.2 45 41-91 30-74 (152)
408 2efj_A 3,7-dimethylxanthine me 89.0 0.22 7.6E-06 44.0 3.0 33 199-231 53-102 (384)
409 1lj9_A Transcriptional regulat 89.0 0.18 6.1E-06 37.2 2.1 46 39-91 31-76 (144)
410 2k4m_A TR8_protein, UPF0146 pr 88.9 0.19 6.6E-06 38.4 2.2 37 197-234 34-72 (153)
411 3deu_A Transcriptional regulat 88.9 0.18 6.3E-06 38.6 2.1 47 39-91 55-101 (166)
412 3v97_A Ribosomal RNA large sub 88.8 0.19 6.6E-06 47.9 2.6 39 199-238 540-579 (703)
413 2v79_A DNA replication protein 88.4 0.25 8.7E-06 37.0 2.6 35 53-91 50-84 (135)
414 1j5y_A Transcriptional regulat 88.0 0.29 1E-05 38.4 2.8 58 37-109 21-79 (187)
415 1jhg_A Trp operon repressor; c 87.8 0.46 1.6E-05 33.8 3.4 41 36-84 44-84 (101)
416 2ar0_A M.ecoki, type I restric 87.7 0.19 6.5E-06 46.4 1.8 49 188-237 160-227 (541)
417 1rjd_A PPM1P, carboxy methyl t 87.6 0.45 1.5E-05 41.1 4.0 39 198-236 97-135 (334)
418 2fbk_A Transcriptional regulat 87.0 0.24 8.2E-06 38.4 1.7 49 39-91 71-119 (181)
419 3s1s_A Restriction endonucleas 86.8 0.36 1.2E-05 46.8 3.1 42 196-237 319-364 (878)
420 3nqo_A MARR-family transcripti 86.6 0.33 1.1E-05 38.0 2.4 72 36-114 40-111 (189)
421 3mwm_A ZUR, putative metal upt 86.5 0.5 1.7E-05 35.3 3.2 64 38-107 15-79 (139)
422 3axs_A Probable N(2),N(2)-dime 86.4 0.31 1.1E-05 43.1 2.4 41 198-238 52-94 (392)
423 2yu3_A DNA-directed RNA polyme 86.4 0.25 8.6E-06 34.7 1.4 49 38-91 38-86 (95)
424 2xig_A Ferric uptake regulatio 85.8 0.61 2.1E-05 35.3 3.5 49 37-91 27-80 (150)
425 4b8x_A SCO5413, possible MARR- 85.1 0.24 8.2E-06 37.1 0.8 45 42-91 40-84 (147)
426 3p8z_A Mtase, non-structural p 85.1 0.79 2.7E-05 37.9 3.9 44 186-230 67-110 (267)
427 1okr_A MECI, methicillin resis 84.9 0.21 7.1E-06 36.0 0.4 50 39-91 12-61 (123)
428 4esf_A PADR-like transcription 84.9 0.91 3.1E-05 32.9 3.9 71 33-111 7-83 (117)
429 2hoe_A N-acetylglucosamine kin 84.8 0.39 1.3E-05 41.9 2.2 55 29-91 12-66 (380)
430 2esh_A Conserved hypothetical 84.7 1.1 3.9E-05 32.2 4.4 70 34-112 10-88 (118)
431 2g9w_A Conserved hypothetical 84.3 0.44 1.5E-05 35.3 2.0 52 38-91 10-61 (138)
432 1sd4_A Penicillinase repressor 83.8 0.36 1.2E-05 34.8 1.3 51 38-91 11-61 (126)
433 3eld_A Methyltransferase; flav 83.6 1 3.5E-05 38.2 4.1 42 188-230 72-113 (300)
434 3f8b_A Transcriptional regulat 83.5 1 3.6E-05 32.4 3.7 72 32-111 7-86 (116)
435 2xyq_A Putative 2'-O-methyl tr 83.4 1.2 4E-05 37.7 4.5 34 196-231 61-101 (290)
436 2o0m_A Transcriptional regulat 83.2 0.23 7.9E-06 43.0 0.0 60 39-114 22-81 (345)
437 3lkz_A Non-structural protein 83.1 0.84 2.9E-05 38.9 3.4 44 186-230 83-126 (321)
438 1z6r_A MLC protein; transcript 82.9 0.74 2.5E-05 40.4 3.2 50 35-91 14-63 (406)
439 3i71_A Ethanolamine utilizatio 82.7 1.8 6.3E-05 27.2 4.0 51 43-108 9-59 (68)
440 3khk_A Type I restriction-modi 82.7 0.37 1.3E-05 44.5 1.1 38 200-237 246-299 (544)
441 1mzb_A Ferric uptake regulatio 82.4 1.1 3.7E-05 33.2 3.5 48 39-91 20-72 (136)
442 1fx7_A Iron-dependent represso 81.4 0.6 2.1E-05 37.8 1.9 48 55-114 25-72 (230)
443 2py6_A Methyltransferase FKBM; 81.2 2.1 7.1E-05 37.9 5.5 39 197-235 225-266 (409)
444 4fx0_A Probable transcriptiona 81.1 0.83 2.8E-05 34.2 2.4 47 40-90 36-84 (148)
445 2p8t_A Hypothetical protein PH 80.7 0.76 2.6E-05 36.8 2.1 46 53-111 29-74 (200)
446 3cta_A Riboflavin kinase; stru 80.5 0.67 2.3E-05 37.5 1.9 53 53-114 26-78 (230)
447 1g60_A Adenine-specific methyl 80.2 0.77 2.6E-05 37.8 2.2 48 187-238 203-251 (260)
448 2vxz_A Pyrsv_GP04; viral prote 80.1 0.93 3.2E-05 34.4 2.3 44 40-91 14-57 (165)
449 1z05_A Transcriptional regulat 80.1 1.2 4E-05 39.5 3.5 51 34-91 36-86 (429)
450 3elk_A Putative transcriptiona 79.6 0.58 2E-05 34.0 1.1 72 32-111 9-86 (117)
451 2w48_A Sorbitol operon regulat 79.5 1.4 4.6E-05 37.5 3.5 35 53-91 20-55 (315)
452 1m6e_X S-adenosyl-L-methionnin 79.4 0.42 1.4E-05 41.8 0.3 36 197-232 50-101 (359)
453 3lsg_A Two-component response 79.1 2.7 9.3E-05 29.0 4.5 34 53-90 18-51 (103)
454 1p4x_A Staphylococcal accessor 79.0 0.91 3.1E-05 37.5 2.2 49 38-91 159-207 (250)
455 2k9s_A Arabinose operon regula 78.9 2.8 9.7E-05 29.2 4.6 45 42-90 8-52 (107)
456 3hhh_A Transcriptional regulat 78.6 1.5 5.1E-05 31.7 3.0 71 33-111 9-85 (116)
457 1xma_A Predicted transcription 78.5 0.82 2.8E-05 34.5 1.7 67 37-111 41-115 (145)
458 3lkd_A Type I restriction-modi 77.9 0.6 2E-05 43.1 0.8 40 198-237 221-264 (542)
459 1v4r_A Transcriptional repress 77.4 0.83 2.8E-05 31.9 1.3 35 53-91 33-68 (102)
460 1yg2_A Gene activator APHA; vi 76.7 1.8 6.1E-05 33.6 3.2 65 38-111 3-76 (179)
461 2qq9_A Diphtheria toxin repres 76.5 1.6 5.4E-05 35.2 3.0 49 54-114 24-72 (226)
462 3kor_A Possible Trp repressor; 76.3 4.9 0.00017 29.3 5.2 40 35-83 61-100 (119)
463 2ek5_A Predicted transcription 75.9 2.4 8E-05 31.2 3.5 35 53-91 26-61 (129)
464 1tc3_C Protein (TC3 transposas 75.9 1.8 6.1E-05 25.0 2.4 27 54-84 21-47 (51)
465 3mn2_A Probable ARAC family tr 75.3 2.7 9.4E-05 29.3 3.7 59 43-116 8-66 (108)
466 1bia_A BIRA bifunctional prote 75.2 2.1 7.1E-05 36.6 3.5 56 39-108 7-62 (321)
467 3l7w_A Putative uncharacterize 75.1 1.4 5E-05 31.1 2.1 66 37-111 9-78 (108)
468 2qy6_A UPF0209 protein YFCK; s 75.0 1.8 6E-05 35.9 2.9 33 198-230 60-104 (257)
469 3lmm_A Uncharacterized protein 75.0 1.7 5.8E-05 40.4 3.0 58 38-111 431-493 (583)
470 1i4w_A Mitochondrial replicati 74.6 2.9 0.0001 36.3 4.3 32 199-230 59-90 (353)
471 1hsj_A Fusion protein consisti 74.2 1.5 5.1E-05 39.2 2.4 47 40-91 407-453 (487)
472 2pi2_A Replication protein A 3 73.9 0.66 2.3E-05 38.8 0.0 60 38-108 208-268 (270)
473 4auk_A Ribosomal RNA large sub 73.8 1.4 4.9E-05 38.6 2.1 33 196-230 209-241 (375)
474 3oou_A LIN2118 protein; protei 73.7 3.1 0.00011 29.0 3.6 44 42-90 10-53 (108)
475 2w57_A Ferric uptake regulatio 73.5 1.5 5.2E-05 33.0 2.0 48 39-91 19-71 (150)
476 1cf7_A Protein (transcription 73.2 2.7 9.2E-05 28.1 2.9 46 42-91 19-64 (76)
477 3oio_A Transcriptional regulat 73.1 3.4 0.00012 29.1 3.7 59 42-115 12-70 (113)
478 4esb_A Transcriptional regulat 72.8 1.3 4.6E-05 31.8 1.4 65 39-111 11-81 (115)
479 2pjp_A Selenocysteine-specific 72.7 1.8 6.2E-05 31.3 2.2 35 53-91 19-53 (121)
480 2gqq_A Leucine-responsive regu 72.1 0.66 2.3E-05 35.4 -0.4 46 38-90 14-59 (163)
481 3maj_A DNA processing chain A; 71.8 1.3 4.4E-05 39.0 1.4 53 39-107 330-382 (382)
482 2px2_A Genome polyprotein [con 71.6 1.8 6.1E-05 36.1 2.1 33 186-219 62-94 (269)
483 2b0l_A GTP-sensing transcripti 71.1 1.6 5.4E-05 30.8 1.5 35 53-91 41-76 (102)
484 1zkd_A DUF185; NESG, RPR58, st 70.6 5.6 0.00019 35.0 5.2 61 167-232 54-121 (387)
485 4ets_A Ferric uptake regulatio 70.5 4.4 0.00015 30.9 4.0 51 39-91 35-88 (162)
486 1stz_A Heat-inducible transcri 70.4 4 0.00014 35.2 4.2 46 39-91 19-71 (338)
487 3by6_A Predicted transcription 70.3 2 6.8E-05 31.4 1.9 35 53-91 33-68 (126)
488 3tqn_A Transcriptional regulat 70.2 2.1 7.1E-05 30.5 2.0 35 53-91 31-66 (113)
489 3neu_A LIN1836 protein; struct 70.0 2.8 9.6E-05 30.5 2.7 35 53-91 35-70 (125)
490 1bl0_A Protein (multiple antib 69.3 4.9 0.00017 29.0 3.9 60 42-116 16-75 (129)
491 1p4x_A Staphylococcal accessor 69.2 2.3 7.7E-05 35.0 2.2 66 40-112 37-102 (250)
492 3eyy_A Putative iron uptake re 69.2 2.6 8.8E-05 31.5 2.4 50 39-91 21-71 (145)
493 2jpc_A SSRB; DNA binding prote 69.1 3.9 0.00013 25.1 2.9 33 40-81 4-36 (61)
494 3dkw_A DNR protein; CRP-FNR, H 68.8 3.1 0.00011 32.5 2.9 34 54-91 178-211 (227)
495 3eyi_A Z-DNA-binding protein 1 68.5 3.5 0.00012 27.0 2.5 46 39-91 12-58 (72)
496 3dv8_A Transcriptional regulat 68.4 2.8 9.4E-05 32.6 2.5 34 54-91 169-202 (220)
497 2gau_A Transcriptional regulat 68.2 3.5 0.00012 32.4 3.2 34 54-91 180-213 (232)
498 3e97_A Transcriptional regulat 67.5 3.1 0.00011 32.7 2.7 34 54-91 175-208 (231)
499 3mkl_A HTH-type transcriptiona 67.5 6.1 0.00021 28.0 4.1 42 42-89 12-53 (120)
500 3la7_A Global nitrogen regulat 67.4 3.5 0.00012 33.0 3.0 34 54-91 193-226 (243)
No 1
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=2e-37 Score=276.33 Aligned_cols=231 Identities=59% Similarity=1.030 Sum_probs=199.3
Q ss_pred CCccccHHHHHHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCC-CCCCCcchHHHHHHHHhcCCc
Q 044458 9 PTQISDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPT-KNSDAHILLDRILRLLASYSV 87 (241)
Q Consensus 9 ~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~-~~~~~~~~l~rlLr~L~~~g~ 87 (241)
++..+++++...+++++++++.+++|++|++|||||+|.+.| ++|+|++|||+++|+ ++|.++..|+||||+|++.|+
T Consensus 12 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g-~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~ 90 (364)
T 3p9c_A 12 MAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNV 90 (364)
T ss_dssp -CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTT-TCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTS
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcC-CCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCC
Confidence 567778999999999999999999999999999999999853 258999999999994 222233499999999999999
Q ss_pred cccccccCCCCccccceecCccccccccCCCCCChHHHHHHhcChhhHHhhhhHHHHHhcCCchhhhhhCCCcccccccC
Q 044458 88 LNCSLHTLPDGGVERLYGLAPVCKFLTKNEDGVSLSDICLLCQDKIVMESWYHLKDAVLEGGIPFNMAYGMNAFDYHGKD 167 (241)
Q Consensus 88 l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~e~~~~~ 167 (241)
|++...+..+|..+++|++|+.+++|+.+..+.++++++.+..++.++..|.+|.+++|+|.++|+..+|.++|+|+.++
T Consensus 91 l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~ 170 (364)
T 3p9c_A 91 VTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTD 170 (364)
T ss_dssp EEEEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTC
T ss_pred EEEeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhC
Confidence 99741000111113789999999988877655689999887767788999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhcchhhHHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcCCCC
Q 044458 168 LRLNKIFNNGMFSHSTITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAPAY 240 (241)
Q Consensus 168 ~~~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~ 240 (241)
|+..+.|+++|...+....+.+++.+++|++..+|||||||+|.++..+++++|+++++++|+|++++.++++
T Consensus 171 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~ 243 (364)
T 3p9c_A 171 PRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQF 243 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhc
Confidence 9999999999999888777889998876888899999999999999999999999999999999999998865
No 2
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=1.9e-38 Score=281.82 Aligned_cols=212 Identities=21% Similarity=0.308 Sum_probs=189.8
Q ss_pred cHHHHHHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccc
Q 044458 14 DEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLH 93 (241)
Q Consensus 14 ~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~ 93 (241)
+++++..|++++.||+.+++|++|+||||||+|.+.+ +|+|++|||+++|+ +++.++|+||.|++.|+|.+..
T Consensus 5 e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~--~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~- 77 (353)
T 4a6d_A 5 EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAP--GPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVET- 77 (353)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS--SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCC--CCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEec-
Confidence 5588899999999999999999999999999998854 79999999999999 9999999999999999998642
Q ss_pred cCCCCccccceecCcccc-ccccCCCCCChHHHHHHhcChhhHHhhhhHHHHHhcCCchhhhhhC---CCcccccccCch
Q 044458 94 TLPDGGVERLYGLAPVCK-FLTKNEDGVSLSDICLLCQDKIVMESWYHLKDAVLEGGIPFNMAYG---MNAFDYHGKDLR 169 (241)
Q Consensus 94 ~~~~g~~~~~y~~t~~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g---~~~~e~~~~~~~ 169 (241)
++| .+.|++|+.++ +|.++.+ .++++++.+. .+..+..|.+|.+++++++++|...+| .++|+++.++|+
T Consensus 78 --~~~--~~~y~~t~~s~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~ 151 (353)
T 4a6d_A 78 --RGG--KAFYRNTELSSDYLTTVSP-TSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEG 151 (353)
T ss_dssp --ETT--EEEEEECHHHHHHHSTTST-TCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHH
T ss_pred --cCc--cceeeCCHHHHHHhhcCCc-hHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHH
Confidence 122 57899999998 5555554 6888888776 366788999999999999999999888 468999999999
Q ss_pred HHHHHHHHHHhcchhhHHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcCCC
Q 044458 170 LNKIFNNGMFSHSTITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAPA 239 (241)
Q Consensus 170 ~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~ 239 (241)
..+.|+++|...+....+.+++.|| |++..+|||||||+|.++.+++++||+++++++|+|+|++.|++
T Consensus 152 ~~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~ 220 (353)
T 4a6d_A 152 ERLQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQ 220 (353)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHH
Confidence 9999999999998888889999999 99999999999999999999999999999999999999988753
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=3.4e-37 Score=275.20 Aligned_cols=231 Identities=70% Similarity=1.136 Sum_probs=197.2
Q ss_pred CccccHHHHHHHHHHHhhhHHHHHHHHHHhcChHHHHHhc-CCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcc
Q 044458 10 TQISDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKA-GPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVL 88 (241)
Q Consensus 10 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~-~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l 88 (241)
+..+++++...+++++.|++.+++|++|++|||||+|.+. |+++|+|++|||+++|...|.+++.|+||||+|++.|+|
T Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll 93 (368)
T 3reo_A 14 THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVV 93 (368)
T ss_dssp ---CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSE
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCe
Confidence 5567899999999999999999999999999999999985 434689999999999832222345999999999999999
Q ss_pred ccccccCCCCccccceecCccccccccCCCCCChHHHHHHhcChhhHHhhhhHHHHHhcCCchhhhhhCCCcccccccCc
Q 044458 89 NCSLHTLPDGGVERLYGLAPVCKFLTKNEDGVSLSDICLLCQDKIVMESWYHLKDAVLEGGIPFNMAYGMNAFDYHGKDL 168 (241)
Q Consensus 89 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~e~~~~~~ 168 (241)
.+...+..+|..+++|++|+.++.|+.+..+.++++++.+..++.++..|.+|.+++++|.++|+..+|.++|+|+.++|
T Consensus 94 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~ 173 (368)
T 3reo_A 94 TYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDH 173 (368)
T ss_dssp EEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCH
T ss_pred EEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCH
Confidence 97410001121137899999999887766556899998887677888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcchhhHHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcCCCC
Q 044458 169 RLNKIFNNGMFSHSTITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAPAY 240 (241)
Q Consensus 169 ~~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~ 240 (241)
+..+.|+++|...+....+.+++.+++|++..+|||||||+|.++..+++++|+++++++|+|++++.++++
T Consensus 174 ~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~ 245 (368)
T 3reo_A 174 RINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAF 245 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhc
Confidence 999999999999888877888988876888899999999999999999999999999999999999998865
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=2.1e-35 Score=261.42 Aligned_cols=206 Identities=20% Similarity=0.268 Sum_probs=190.5
Q ss_pred ccccHHHHHHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 11 QISDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 11 ~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
+....++...+++++.|++.+++|++|+++||||+|.+ +|+|++|||+++|+ +++.++||||+|++.|+|++
T Consensus 16 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~ 87 (348)
T 3lst_A 16 DMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD----GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRE 87 (348)
T ss_dssp CCCHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT----SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEe
Confidence 44557889999999999999999999999999999976 69999999999999 99999999999999999997
Q ss_pred ccccCCCCccccceecCccccccccCCCCCChHHHHHHhcChhhHHhhhhHHHHHhcCCchhhhhhCCCcccccccCchH
Q 044458 91 SLHTLPDGGVERLYGLAPVCKFLTKNEDGVSLSDICLLCQDKIVMESWYHLKDAVLEGGIPFNMAYGMNAFDYHGKDLRL 170 (241)
Q Consensus 91 ~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~e~~~~~~~~ 170 (241)
. ++.|++|+.++.|.++.+ .++++++.++.++.+++.|.+|++++++|+++|+..+|.++|+|+.++|+.
T Consensus 88 ~---------~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~ 157 (348)
T 3lst_A 88 S---------DGRFALTDKGAALRSDSP-VPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEV 157 (348)
T ss_dssp E---------TTEEEECTTTGGGSTTSS-SCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHH
T ss_pred c---------CCEEecCHHHHHHhcCCC-ccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHH
Confidence 3 689999999998876654 578888887666667899999999999999999999998999999999999
Q ss_pred HHHHHHHHHhcchhhHHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHh
Q 044458 171 NKIFNNGMFSHSTITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQ 235 (241)
Q Consensus 171 ~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~ 235 (241)
.+.|+++|...+....+.+++.++ |++..+|||||||+|.++..+++++|+++++++|+|+++.
T Consensus 158 ~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 221 (348)
T 3lst_A 158 EALYYEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA 221 (348)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT
T ss_pred HHHHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh
Confidence 999999999998888889999999 9999999999999999999999999999999999999987
No 5
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=4.4e-35 Score=261.47 Aligned_cols=210 Identities=20% Similarity=0.335 Sum_probs=191.2
Q ss_pred ccccHHHHHHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 11 QISDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 11 ~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
+..+.+...++++++.+++.+++|++|+++||||.|.+ +|+|++|||+++|+ +++.++||||+|++.|+|.+
T Consensus 32 ~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~ 103 (369)
T 3gwz_A 32 TAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE----GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDD 103 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEE
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEE
Confidence 34446778889999999999999999999999999985 69999999999999 99999999999999999997
Q ss_pred ccccCCCCccccc-eecCccccccccCCCCCChHHHHHHhcChhhHHhhhhHHHHHhcCCchhhhhhCCCcccccccCch
Q 044458 91 SLHTLPDGGVERL-YGLAPVCKFLTKNEDGVSLSDICLLCQDKIVMESWYHLKDAVLEGGIPFNMAYGMNAFDYHGKDLR 169 (241)
Q Consensus 91 ~~~~~~~g~~~~~-y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~e~~~~~~~ 169 (241)
. . ++. |.+|+.++.|.++.+ .++++++.++.++..+..|.+|.+++++++++|...+|.++|+|+.++|+
T Consensus 104 ~----~----~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~ 174 (369)
T 3gwz_A 104 L----G----HDDLFAQNALSAVLLPDPA-SPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPK 174 (369)
T ss_dssp C----S----STTEEECCHHHHTTSCCTT-CHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHH
T ss_pred e----C----CCceEecCHHHHHHhcCCc-hhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHH
Confidence 4 1 578 999999998876654 57888888776666788999999999999999999999899999999999
Q ss_pred HHHHHHHHHHhcchhhHHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcCC
Q 044458 170 LNKIFNNGMFSHSTITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAP 238 (241)
Q Consensus 170 ~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~ 238 (241)
..+.|+++|...+....+.+++.++ |++..+|||||||+|.++..+++++|+++++++|+|.+++.|+
T Consensus 175 ~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~ 242 (369)
T 3gwz_A 175 ARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEAR 242 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHH
Confidence 9999999999988888888999998 9999999999999999999999999999999999999998765
No 6
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=3.8e-34 Score=254.20 Aligned_cols=223 Identities=29% Similarity=0.390 Sum_probs=191.8
Q ss_pred cccHHHHHHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 12 ISDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 12 ~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.+..++...+++++.+++.+++|++|+++||||+|++.+ +|+|++|||+++|+ +|.+++.++|+||+|++.|+|.+.
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 5 SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHG--KPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp SCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHT--SCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcC--CCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEe
Confidence 456778889999999999999999999999999998753 58999999999999 222478999999999999999874
Q ss_pred cc-cCC-CCccccceecCccccccccCCCCCChHHHHHHhcChhhHHhhhhHHHHHhcC--CchhhhhhCCCcccccccC
Q 044458 92 LH-TLP-DGGVERLYGLAPVCKFLTKNEDGVSLSDICLLCQDKIVMESWYHLKDAVLEG--GIPFNMAYGMNAFDYHGKD 167 (241)
Q Consensus 92 ~~-~~~-~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g--~~~~~~~~g~~~~e~~~~~ 167 (241)
.. ... +|..++.|++|+.+++|+++++ .++++++.+..++.+++.|.+|+++++++ .++|+.++|.++|+++.++
T Consensus 82 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~ 160 (358)
T 1zg3_A 82 IVKGKEGDEEEEIAYSLTPPSKLLISGKP-TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKD 160 (358)
T ss_dssp EECCSSSSCCCEEEEEECHHHHTTCTTST-TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSG
T ss_pred cccccccCCCCCCEEeCCHHHHHHhCCCC-ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcC
Confidence 00 000 1111379999999998887765 58899998876677888999999999998 7899999999999999999
Q ss_pred chHHH--HHHHHHHhcchhhHHHHHHhc--CCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcCCCC
Q 044458 168 LRLNK--IFNNGMFSHSTITMKKFLENY--KGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAPAY 240 (241)
Q Consensus 168 ~~~~~--~f~~aM~~~~~~~~~~~~~~~--~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~ 240 (241)
|+..+ .|+++|...+.... .+++.| + |++..+|||||||+|.++..+++++|+++++++|+|.+++.++++
T Consensus 161 p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~ 235 (358)
T 1zg3_A 161 SESSTLSMFQDAMASDSRMFK-LVLQENKRV-FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN 235 (358)
T ss_dssp GGHHHHHHHHHHHHHHHHTHH-HHHHHTHHH-HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCC
T ss_pred hhhhhHHHHHHHHhcccHHHH-HHHHhcchh-ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccC
Confidence 99999 99999998887766 788888 5 788899999999999999999999999999999999999998864
No 7
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=5.2e-34 Score=252.73 Aligned_cols=218 Identities=27% Similarity=0.393 Sum_probs=192.6
Q ss_pred ccccHHHHHHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 11 QISDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 11 ~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
+.+..++...+++++.+++.+++|++++++|||+.|++.+ +++|++|||+++|+ +|.+++.++|+||+|++.|+|++
T Consensus 10 ~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~ 86 (352)
T 1fp2_A 10 PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEI 86 (352)
T ss_dssp STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcC--CCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEE
Confidence 4567888999999999999999999999999999998753 58999999999999 12137789999999999999997
Q ss_pred ccccCCCCccccceecCccccccccCCCCCChHHHHHHhcChhhHHhhhhHHHHHh-cCCchhhhhhCCCcccccccCch
Q 044458 91 SLHTLPDGGVERLYGLAPVCKFLTKNEDGVSLSDICLLCQDKIVMESWYHLKDAVL-EGGIPFNMAYGMNAFDYHGKDLR 169 (241)
Q Consensus 91 ~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~g~~~~~~~~g~~~~e~~~~~~~ 169 (241)
.. +| ++.|++|+.+++|.++.+ .++++++.+..++.++..|.+|+++++ +|+++|+.++|.++|+++.++|+
T Consensus 87 ~~----~~--~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~ 159 (352)
T 1fp2_A 87 IT----KE--EESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPE 159 (352)
T ss_dssp EE----SS--SEEEEECHHHHTTSTTSS-SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHH
T ss_pred ec----CC--CCeEeCCHHHHHHhCCCC-ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChH
Confidence 41 12 589999999998887765 578999888766778889999999999 88899999999999999999999
Q ss_pred HHHHHHHHHHhcchhhHHHHHHhc--CCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcCCCC
Q 044458 170 LNKIFNNGMFSHSTITMKKFLENY--KGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAPAY 240 (241)
Q Consensus 170 ~~~~f~~aM~~~~~~~~~~~~~~~--~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~ 240 (241)
..+.|+++|...+....+. ++.| + |++..+|||||||+|.++..+++++|+++++++|+|.+++.++++
T Consensus 160 ~~~~f~~~m~~~~~~~~~~-~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~ 230 (352)
T 1fp2_A 160 YNTSFNDAMASDSKLINLA-LRDCDFV-FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGS 230 (352)
T ss_dssp HHHHHHHHHHHTHHHHHHH-HHTCHHH-HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCB
T ss_pred HHHHHHHHHHhcchhhhhH-HHhcccc-cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccC
Confidence 9999999999988876667 7788 5 888899999999999999999999999999999999999998864
No 8
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=2.5e-33 Score=250.15 Aligned_cols=226 Identities=46% Similarity=0.746 Sum_probs=179.1
Q ss_pred cHHHHHHHH--HHHhhhHHHHHHHHHHhcChHHHHHhcCCCCC---CCHHHHHhhCCC--CCCCCcchHHHHHHHHhcCC
Q 044458 14 DEEANLFAM--QLTSASVLPMVLKSAIELDLLEVIAKAGPGAF---MSPKQIASQLPT--KNSDAHILLDRILRLLASYS 86 (241)
Q Consensus 14 ~~~~~~~l~--~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~---~t~~eLA~~~g~--~~~~~~~~l~rlLr~L~~~g 86 (241)
..++...++ +++.+++.+++|++|+++||||.|++.| +| +|++|||+++|+ ++|.+++.++|+||+|++.|
T Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g--~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~g 96 (372)
T 1fp1_D 19 QTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKAT--PPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYS 96 (372)
T ss_dssp CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCS--STTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcC--CCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCC
Confidence 456777788 9999999999999999999999999742 15 999999999997 23436889999999999999
Q ss_pred ccccccccCCCCccccceecCccccccccCCCCCChHHHHHHhcChhhHHhhhhHHHHHhcC-CchhhhhhCCCcccccc
Q 044458 87 VLNCSLHTLPDGGVERLYGLAPVCKFLTKNEDGVSLSDICLLCQDKIVMESWYHLKDAVLEG-GIPFNMAYGMNAFDYHG 165 (241)
Q Consensus 87 ~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g-~~~~~~~~g~~~~e~~~ 165 (241)
+|++..++..+|..++.|++|+.+++|+++++..++++++.+..++.++..|.+|+++++++ .++|+..+|.++|+++.
T Consensus 97 ll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~ 176 (372)
T 1fp1_D 97 VLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMG 176 (372)
T ss_dssp SEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCS
T ss_pred ceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHH
Confidence 99874100001111259999999998887754247888988876677888999999999999 88999999999999999
Q ss_pred cCchHHHHHHHHHHhcchhhHHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcCCCCC
Q 044458 166 KDLRLNKIFNNGMFSHSTITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAPAYP 241 (241)
Q Consensus 166 ~~~~~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~ 241 (241)
++|+..+.|+++|...+....+.+++.|+.|++..+|||||||+|.++..+++++|+++++++|+|.+++.++++|
T Consensus 177 ~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~ 252 (372)
T 1fp1_D 177 KDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLS 252 (372)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCT
T ss_pred hCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcC
Confidence 9999999999999998887778888888658888999999999999999999999999999999999999988753
No 9
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=1.7e-34 Score=253.76 Aligned_cols=202 Identities=22% Similarity=0.312 Sum_probs=182.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCC
Q 044458 19 LFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDG 98 (241)
Q Consensus 19 ~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g 98 (241)
..+++++.|++.+++|++|+++||||+|.+ +|+|++|||+++|+ +++.++||||+|++.|+|.+. .
T Consensus 7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~----~-- 72 (332)
T 3i53_A 7 HIGLRALADLATPMAVRVAATLRVADHIAA----GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRD----G-- 72 (332)
T ss_dssp SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----T--
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEec----C--
Confidence 357889999999999999999999999986 69999999999999 999999999999999999974 1
Q ss_pred ccccceecCccccccccCCCCCChHHHHHHhcChhhH-HhhhhHHHHHhcCCchhhhhhCCCcccccccCchHHHHHHHH
Q 044458 99 GVERLYGLAPVCKFLTKNEDGVSLSDICLLCQDKIVM-ESWYHLKDAVLEGGIPFNMAYGMNAFDYHGKDLRLNKIFNNG 177 (241)
Q Consensus 99 ~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~g~~~~~~~~g~~~~e~~~~~~~~~~~f~~a 177 (241)
++.|.+|+.++.|.++.+ .++++++.+...+..+ ..|.+|.+++++++++|+..+|.++|+++.++|+..+.|+++
T Consensus 73 --~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 149 (332)
T 3i53_A 73 --QGVYGLTEFGEQLRDDHA-AGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTL 149 (332)
T ss_dssp --TSBEEECTTGGGGSTTCT-TCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHH
T ss_pred --CCeEEcCHhHHHHhcCCc-hhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHH
Confidence 689999999998876654 5788888776444455 789999999999999999999988999999999999999999
Q ss_pred HHhcchhhHHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcCC
Q 044458 178 MFSHSTITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAP 238 (241)
Q Consensus 178 M~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~ 238 (241)
|...+....+.+++.++ |++..+|||||||+|.++..+++++|+++++++|+|.+++.|+
T Consensus 150 m~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~ 209 (332)
T 3i53_A 150 MSHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAH 209 (332)
T ss_dssp HHHHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHH
T ss_pred HHHhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHH
Confidence 99988777778888888 9988999999999999999999999999999999999998775
No 10
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.9e-33 Score=246.99 Aligned_cols=201 Identities=22% Similarity=0.376 Sum_probs=182.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccC
Q 044458 16 EANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTL 95 (241)
Q Consensus 16 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~ 95 (241)
.+...+++++.+++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|+||.|++.|+|.+.
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~----~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~---- 74 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES----GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGD---- 74 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEec----
Confidence 677899999999999999999999999999976 69999999999999 999999999999999999974
Q ss_pred CCCccccceecCccccccccCCCCCChHHHHHHhcChhhHHhhhhHHHHHhcCCchhhhhhCCCcccccccCchHHHHHH
Q 044458 96 PDGGVERLYGLAPVCKFLTKNEDGVSLSDICLLCQDKIVMESWYHLKDAVLEGGIPFNMAYGMNAFDYHGKDLRLNKIFN 175 (241)
Q Consensus 96 ~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~e~~~~~~~~~~~f~ 175 (241)
. ++.|++|+.++.|. +.+ .++++++.+..++.+ ..|.+|.+++++++++|+..+|.++|+++.++|+..+.|+
T Consensus 75 ~----~~~y~~t~~s~~l~-~~~-~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~ 147 (334)
T 2ip2_A 75 T----RDGYANTPTSHLLR-DVE-GSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFL 147 (334)
T ss_dssp T----TTEEEECHHHHTTS-SST-TCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHH
T ss_pred C----CCeEecCHHHHHHh-CCC-ccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHH
Confidence 1 58999999999877 543 578898888765544 8999999999999999999999999999999999999999
Q ss_pred HHHHhcchhhHHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcCC
Q 044458 176 NGMFSHSTITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAP 238 (241)
Q Consensus 176 ~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~ 238 (241)
++| ..+....+.+++.++ |++ .+|||||||+|.++..+++++|+++++++|+|.+++.++
T Consensus 148 ~~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~ 207 (334)
T 2ip2_A 148 LAM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVAR 207 (334)
T ss_dssp HHH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHH
T ss_pred HHH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHH
Confidence 999 888777788999998 988 999999999999999999999999999999998887664
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.98 E-value=1.3e-32 Score=244.97 Aligned_cols=208 Identities=16% Similarity=0.165 Sum_probs=176.7
Q ss_pred CCCccccHHHHHHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCc
Q 044458 8 TPTQISDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSV 87 (241)
Q Consensus 8 ~~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~ 87 (241)
...+.+..++...+++++.|++.+++|++++++||||+|++.+ +|+|++|||+++|+ +++.++||||+|++.|+
T Consensus 6 ~~~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~--~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~ 79 (363)
T 3dp7_A 6 TKEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKR--EGYTLQEISGRTGL----TRYAAQVLLEASLTIGT 79 (363)
T ss_dssp CCSCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCT--TCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTS
T ss_pred ccCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcC--CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCC
Confidence 4677788899999999999999999999999999999998743 69999999999999 99999999999999999
Q ss_pred cccccccCCCCccccceecCccccccccCCCCCChHHHHHHhcChhhHHhhhhHHHHHhcCCchhhhhhC--CCcccccc
Q 044458 88 LNCSLHTLPDGGVERLYGLAPVCKFLTKNEDGVSLSDICLLCQDKIVMESWYHLKDAVLEGGIPFNMAYG--MNAFDYHG 165 (241)
Q Consensus 88 l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g--~~~~e~~~ 165 (241)
|++. +++|++|+.+++|+++++ ...++.+. .+.+++.|.+|++++++|++++...+| .++|+++.
T Consensus 80 l~~~---------~~~y~~t~~s~~L~~~~~---~~~~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~ 146 (363)
T 3dp7_A 80 ILLE---------EDRYVLAKAGWFLLNDKM---ARVNMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLS 146 (363)
T ss_dssp EEEE---------TTEEEECHHHHHHHHCHH---HHHHHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGG
T ss_pred eEec---------CCEEecccchHHhhCCCc---ccchheee-cHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHh
Confidence 9873 689999999998887653 23334443 356788999999999999998888888 68999999
Q ss_pred cCchHHHH----HHHHHHhcchhhHHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcCC
Q 044458 166 KDLRLNKI----FNNGMFSHSTITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAP 238 (241)
Q Consensus 166 ~~~~~~~~----f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~ 238 (241)
++|+..+. |+++|..... ..+++.+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.|+
T Consensus 147 ~~~~~~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~ 219 (363)
T 3dp7_A 147 QLPEQVQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMR 219 (363)
T ss_dssp GSCHHHHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHH
Confidence 99987763 6777655432 23444444 4567999999999999999999999999999999999998765
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.98 E-value=5.7e-32 Score=240.81 Aligned_cols=211 Identities=19% Similarity=0.236 Sum_probs=188.2
Q ss_pred CccccHHHHHHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccc
Q 044458 10 TQISDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLN 89 (241)
Q Consensus 10 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~ 89 (241)
+....++....+++++.+++.+++|++++++|||+.|.. +++|++|||+++|+ +++.++|+||.|++.|+|.
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~ 80 (374)
T 1qzz_A 9 PLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLE 80 (374)
T ss_dssp -CCCCHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEE
Confidence 334468888899999999999999999999999999965 69999999999999 9999999999999999999
Q ss_pred cccccCCCCcccc--ceecCccccccccCCCCCChHHHHHHhcChhhH-HhhhhHHHHHhcCCchhhhhhCCCccccccc
Q 044458 90 CSLHTLPDGGVER--LYGLAPVCKFLTKNEDGVSLSDICLLCQDKIVM-ESWYHLKDAVLEGGIPFNMAYGMNAFDYHGK 166 (241)
Q Consensus 90 ~~~~~~~~g~~~~--~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~g~~~~~~~~g~~~~e~~~~ 166 (241)
+. . ++ .|.+|+.+++|.++.+ .+++.++.+..++..+ ..|.+|.++++++.++|+..+|.++|+++.+
T Consensus 81 ~~----~----~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~ 151 (374)
T 1qzz_A 81 GG----E----KQGRPLRPTRLGMLLADGHP-AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSA 151 (374)
T ss_dssp CC----C----C-CCCCEECTTGGGGSTTCT-TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHH
T ss_pred Ee----C----CCCeEEEEChHHHhhcCCCc-ccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhh
Confidence 74 1 45 9999999998887765 5788888776444456 7899999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhcchhhHHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcCC
Q 044458 167 DLRLNKIFNNGMFSHSTITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAP 238 (241)
Q Consensus 167 ~~~~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~ 238 (241)
+|+..+.|+++|........+.+++.++ ++...+|||||||+|.++..+++.+|+++++++|+|.+++.++
T Consensus 152 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~ 222 (374)
T 1qzz_A 152 DVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERAR 222 (374)
T ss_dssp CHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHH
Confidence 9999999999999888777788899998 8888999999999999999999999999999999999888764
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.97 E-value=2.2e-31 Score=236.01 Aligned_cols=208 Identities=19% Similarity=0.265 Sum_probs=185.6
Q ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccc
Q 044458 13 SDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSL 92 (241)
Q Consensus 13 ~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~ 92 (241)
..+....++++++.+++.+++|.+++++|||+.|.. +++|++|||+++|+ +++.++|+||.|++.|+|.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~- 85 (360)
T 1tw3_A 15 PQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED- 85 (360)
T ss_dssp --CHHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-
T ss_pred CcccchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEec-
Confidence 455668889999999999999999999999999965 69999999999999 999999999999999999974
Q ss_pred ccCCCCccccceecCccccccccCCCCCChHHHHHHhcChh-hHHhhhhHHHHHhcCCchhhhhhCCCcccccccCchHH
Q 044458 93 HTLPDGGVERLYGLAPVCKFLTKNEDGVSLSDICLLCQDKI-VMESWYHLKDAVLEGGIPFNMAYGMNAFDYHGKDLRLN 171 (241)
Q Consensus 93 ~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~g~~~~~~~~g~~~~e~~~~~~~~~ 171 (241)
. +++|++|+.+++|.++.+ .+++.++.+...+. .+..|.+|.+.+++|.++|+..+|.++|+++.++|+..
T Consensus 86 ---~----~g~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~ 157 (360)
T 1tw3_A 86 ---A----PGEFVPTEVGELLADDHP-AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLR 157 (360)
T ss_dssp ---E----TTEEEECTTGGGGSTTST-TCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHH
T ss_pred ---C----CCeEEeCHHHHHHhcCCc-hhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHH
Confidence 1 589999999998887765 57888887764333 56789999999999999999889999999999999999
Q ss_pred HHHHHHHHhcchhhHHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcCC
Q 044458 172 KIFNNGMFSHSTITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAP 238 (241)
Q Consensus 172 ~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~ 238 (241)
+.|+.+|...+....+.+++.++ +++..+|||||||+|.++..+++.+|+++++.+|+|.+++.++
T Consensus 158 ~~f~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~ 223 (360)
T 1tw3_A 158 ASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTAR 223 (360)
T ss_dssp HHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHH
Confidence 99999999888877788899998 8888999999999999999999999999999999998888764
No 14
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.97 E-value=4.2e-30 Score=228.11 Aligned_cols=198 Identities=18% Similarity=0.253 Sum_probs=173.7
Q ss_pred cccHHHHHHHHHHHh-hhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 12 ISDEEANLFAMQLTS-ASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 12 ~~~~~~~~~l~~~~~-g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
.+..++..++++++. |++.+++|++++++||||.|.+ +|.|++|||+++|+ +++.++|+||+|++.|+|++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~----~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~ 96 (359)
T 1x19_A 25 NDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINL 96 (359)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC----CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEe
Confidence 345677888999986 8999999999999999999986 68999999999999 99999999999999999997
Q ss_pred ccccCCCCccccceecCccc-cccccCCCC--CChHHHHHHhcChhhHHhhhhHHHHHhcCCchhhhhhCCCcccccccC
Q 044458 91 SLHTLPDGGVERLYGLAPVC-KFLTKNEDG--VSLSDICLLCQDKIVMESWYHLKDAVLEGGIPFNMAYGMNAFDYHGKD 167 (241)
Q Consensus 91 ~~~~~~~g~~~~~y~~t~~s-~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~e~~~~~ 167 (241)
. ++.|++|+.+ .+|.++.+. .++++++.+. .+.+++.|.+|+++++++.+ |+++.++
T Consensus 97 ~---------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~ 156 (359)
T 1x19_A 97 E---------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPY 156 (359)
T ss_dssp E---------TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCS
T ss_pred e---------CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccC
Confidence 4 5799999975 467665431 4688888775 35678899999999998754 7788889
Q ss_pred ch---HHHHHHHHHHhcch-hhHHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcCC
Q 044458 168 LR---LNKIFNNGMFSHST-ITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAP 238 (241)
Q Consensus 168 ~~---~~~~f~~aM~~~~~-~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~ 238 (241)
|+ ..+.|+.+|...+. ...+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++
T Consensus 157 p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~ 230 (359)
T 1x19_A 157 PPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVN 230 (359)
T ss_dssp SCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHH
T ss_pred chhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHH
Confidence 99 99999999999888 77788999998 9999999999999999999999999999999999999888765
No 15
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.97 E-value=5.8e-30 Score=224.36 Aligned_cols=195 Identities=15% Similarity=0.172 Sum_probs=174.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCC
Q 044458 19 LFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDG 98 (241)
Q Consensus 19 ~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g 98 (241)
..+++++.+++.+++|++++++|||+.|++ +++|++|||+++|+ +++.++|+||+|++.|+|++.
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~~------- 72 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ----GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTKQ------- 72 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT----SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEec-------
Confidence 578899999999999999999999999986 68999999999999 999999999999999999863
Q ss_pred ccccceecCccc-cccccCCCCCChHHHHHHhcChhhHHhhhhHHHHHhcCCchhhhhhCCCcccccccCchHHHHHHHH
Q 044458 99 GVERLYGLAPVC-KFLTKNEDGVSLSDICLLCQDKIVMESWYHLKDAVLEGGIPFNMAYGMNAFDYHGKDLRLNKIFNNG 177 (241)
Q Consensus 99 ~~~~~y~~t~~s-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~e~~~~~~~~~~~f~~a 177 (241)
++.|++|+.+ ++|.++.+ .++++++.+..++..++.|.+|.++++++.++|+ + |+++.++++..+.|.++
T Consensus 73 --~~~y~~t~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~ 143 (335)
T 2r3s_A 73 --AEGYRLTSDSAMFLDRQSK-FYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKA 143 (335)
T ss_dssp --TTEEEECHHHHHHTCTTST-TCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHH
T ss_pred --CCEEecCHHHHHHhccCCc-HHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHH
Confidence 6899999999 57777665 5788888887555678899999999999887764 3 88888999999999999
Q ss_pred HHhcchhhHHHHHHhcCCC--CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcCC
Q 044458 178 MFSHSTITMKKFLENYKGF--EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAP 238 (241)
Q Consensus 178 M~~~~~~~~~~~~~~~~~~--~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~ 238 (241)
|..........+++.++ + .+..+|||||||+|.++..+++++|+.+++++|++.+++.++
T Consensus 144 ~~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~ 205 (335)
T 2r3s_A 144 MSPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAK 205 (335)
T ss_dssp SGGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHH
T ss_pred HHHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHH
Confidence 99888877788888898 8 888999999999999999999999999999999998887654
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.96 E-value=2.3e-29 Score=222.41 Aligned_cols=201 Identities=17% Similarity=0.257 Sum_probs=166.9
Q ss_pred CCccccHHHHHHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcc
Q 044458 9 PTQISDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVL 88 (241)
Q Consensus 9 ~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l 88 (241)
.++....+.+..+++++.+++.+++|++|+++||||+|. +|+|++|||+++|+ +++.++||||+|++.|+|
T Consensus 16 ~~~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~-----~~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll 86 (352)
T 3mcz_A 16 TEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQ-----TGRTPAEVAASFGM----VEGKAAILLHALAALGLL 86 (352)
T ss_dssp CCSCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT-----SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhC-----CCCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCe
Confidence 444455555666999999999999999999999999995 38999999999999 999999999999999999
Q ss_pred ccccccCCCCccccceecCcccc-ccccCCCCCChHHHHHHhcChhhHHhhhhHHHHHhcCCch-hhhhhCCCccccccc
Q 044458 89 NCSLHTLPDGGVERLYGLAPVCK-FLTKNEDGVSLSDICLLCQDKIVMESWYHLKDAVLEGGIP-FNMAYGMNAFDYHGK 166 (241)
Q Consensus 89 ~~~~~~~~~g~~~~~y~~t~~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~-~~~~~g~~~~e~~~~ 166 (241)
++. ++.|.+|+.++ +|.++.+ .+++.++.+. ...++.|.+|++++++|.+. |+.. + ++.+
T Consensus 87 ~~~---------~~~y~~t~~s~~~l~~~~~-~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~---~---~~~~ 148 (352)
T 3mcz_A 87 TKE---------GDAFRNTALTERYLTTTSA-DYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE---S---RFAH 148 (352)
T ss_dssp EEE---------TTEEEECHHHHHHHSTTCT-TCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH---H---HTTT
T ss_pred Eec---------CCeeecCHHHHhhccCCCh-hhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc---c---cccc
Confidence 974 57899999998 5555544 6788887664 45678999999999998654 3322 1 2356
Q ss_pred CchHHHHHHHHHHhcchhhHHHHHHhcCCCCC-CCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcCC
Q 044458 167 DLRLNKIFNNGMFSHSTITMKKFLENYKGFEG-LQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAP 238 (241)
Q Consensus 167 ~~~~~~~f~~aM~~~~~~~~~~~~~~~~~~~~-~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~ 238 (241)
+|+..+.|+.+|...... ...+++.++ +.+ ..+|||||||+|.++..+++++|+++++++|+|.+++.++
T Consensus 149 ~~~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~ 219 (352)
T 3mcz_A 149 DTRARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAAR 219 (352)
T ss_dssp CHHHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHH
T ss_pred CHHHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHH
Confidence 899999999999883332 237888888 887 8999999999999999999999999999999999887664
No 17
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=98.84 E-value=3.5e-09 Score=94.09 Aligned_cols=159 Identities=11% Similarity=0.046 Sum_probs=96.7
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc-ccccCCCC
Q 044458 41 DLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK-FLTKNEDG 119 (241)
Q Consensus 41 glfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~-~l~~~~~~ 119 (241)
++|..| . +|.|..|||+.+|+ +++.++++|+.|.+.|+++.. ++ |++|+.+. ++.....
T Consensus 47 ~ll~~L-~----~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~~---------~~-~~lt~~~~~~l~~~~~- 106 (373)
T 2qm3_A 47 NVLSAV-L----ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTFE---------DG-VKLTEKGEELVAEYGI- 106 (373)
T ss_dssp HHHHHH-H----HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECS---------SS-SEECHHHHHHHHHHTC-
T ss_pred HHHHHh-c----CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEEC---------CC-EEECHHHHHHHHhcCc-
Confidence 678888 4 58999999999999 999999999999999999863 34 99999776 4443211
Q ss_pred CChHHHH-HHhc-----ChhhHHhhhhHHHHHhcCCchhhhhhCCCcccccccCchHHHHHHHHHHhcchhhHHHHHHhc
Q 044458 120 VSLSDIC-LLCQ-----DKIVMESWYHLKDAVLEGGIPFNMAYGMNAFDYHGKDLRLNKIFNNGMFSHSTITMKKFLENY 193 (241)
Q Consensus 120 ~~~~~~~-~~~~-----~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~e~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~ 193 (241)
.+..+.+ .... .+.+...|..+.+.++....+. ..|+-....++.. ....+ ......
T Consensus 107 ~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~--~~~~l---------~~~~~~ 169 (373)
T 2qm3_A 107 GKRYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPL------HEFDQAYVTPETT--VARVI---------LMHTRG 169 (373)
T ss_dssp CCCCC------------CGGGHHHHHHHHHHHTTCCCCC------GGGTCCCBCHHHH--HHHHH---------HHHHTT
T ss_pred cccccccchhhcCCCcchhhhHHHHHHHHHHHhcCCccc------hhcCCeecCHHHH--HHHHH---------HHhhcC
Confidence 1111111 0000 0111223445555554332111 1111100112111 11111 001111
Q ss_pred CCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 194 KGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 194 ~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
+ . ...+||||| |+|.++..+++..|+.+++.+|+ |.+++.|++
T Consensus 170 ~-~-~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~ 213 (373)
T 2qm3_A 170 D-L-ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEK 213 (373)
T ss_dssp C-S-TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHH
T ss_pred C-C-CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 2 2 358999999 99999999999999999999999 899887653
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=97.73 E-value=3.5e-05 Score=62.83 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=41.0
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.++...+......+|||||||+|.++..+++.+|+.+++.+|+ |..++.++
T Consensus 34 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~ 85 (234)
T 3dtn_A 34 VSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAK 85 (234)
T ss_dssp HHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence 3444443234568999999999999999999999999999999 77776654
No 19
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=97.70 E-value=1.1e-05 Score=65.43 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=33.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||+|.++..+++..| +++..|+ |.+++.++
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~ 77 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAR 77 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHH
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHH
Confidence 368999999999999999999988 7888998 77777654
No 20
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=97.67 E-value=3.9e-05 Score=61.25 Aligned_cols=52 Identities=23% Similarity=0.242 Sum_probs=36.1
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
.+++.++......+|||||||+|.++..+++.+|+.+++.+|+ |..++.+++
T Consensus 20 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~ 72 (215)
T 4dzr_A 20 EAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARR 72 (215)
T ss_dssp HHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------
T ss_pred HHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHH
Confidence 4444444225678999999999999999999999999999999 888887764
No 21
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=97.66 E-value=3.6e-05 Score=61.68 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=42.7
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.++..++ .....+|||||||+|.++..+++.+|+.+++.+|. |..++.++
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~ 81 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIR 81 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHH
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 4455565 66778999999999999999999999999999999 77777654
No 22
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=97.62 E-value=2.7e-05 Score=60.61 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=41.5
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.++..++ .....+|||||||+|.++..+++.+|..+++.+|+ |..++.++
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~ 66 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERIL 66 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHH
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHH
Confidence 3445555 66678999999999999999999999999999999 66776654
No 23
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=97.60 E-value=9.8e-05 Score=61.55 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=43.1
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCCCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPAYP 241 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~~ 241 (241)
..+++.++ .....+|||||||+|.++..+++ |+.+++.+|+ |..++.+++.+
T Consensus 24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~ 76 (261)
T 3ege_A 24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP 76 (261)
T ss_dssp HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT
T ss_pred HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc
Confidence 45555665 66779999999999999999998 7889999999 78888877653
No 24
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=97.57 E-value=3.7e-05 Score=62.44 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=36.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||+|.++..+++.+|+.+++.+|+ +..++.|+
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~ 79 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV 79 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHH
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHH
Confidence 357899999999999999999999999999999 77776553
No 25
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=97.55 E-value=4.8e-05 Score=61.49 Aligned_cols=41 Identities=29% Similarity=0.373 Sum_probs=36.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||+|.++..+++.+|+.+++.+|+ |..++.|+
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~ 82 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL 82 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHH
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHH
Confidence 357999999999999999999999999999999 77777653
No 26
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=97.53 E-value=3.4e-05 Score=63.41 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=41.8
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+++.++ .....+|||||||+|.++..+++..| .+++.+|. |..++.++
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~ 131 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAK 131 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHH
Confidence 345556666 67778999999999999999999998 88999997 77776654
No 27
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=97.51 E-value=4.5e-05 Score=64.97 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=38.2
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
+....+|||||||+|.++..+++.+|..+++.+|+ |..++.|+
T Consensus 44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~ 87 (292)
T 3g07_A 44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSAR 87 (292)
T ss_dssp GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHH
T ss_pred hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 33568999999999999999999999999999999 78787765
No 28
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=97.51 E-value=5e-05 Score=64.03 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=39.4
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHH-CCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISK-YPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.++..++ +....+|||||||.|.++..+++. +|..+++.+|+ |..++.++
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~ 152 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAM 152 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHH
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHH
Confidence 4455555 677789999999999999999998 89999999999 77777554
No 29
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=97.50 E-value=5.1e-05 Score=62.07 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=35.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 237 (241)
...+|||||||+|.++..+++.+|+.+++.+|. |..++.|
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a 74 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGAC 74 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHH
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHH
Confidence 457999999999999999999999999999999 6766654
No 30
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=97.49 E-value=0.00012 Score=62.82 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=46.4
Q ss_pred HHHHHHHhcchhhHHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 173 IFNNGMFSHSTITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 173 ~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.|.+ +..........+++.++.+....+|||||||.|.++..+++++ +.+++.+|+ |..++.|+
T Consensus 93 ~f~~-~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~ 157 (312)
T 3vc1_A 93 VIAE-LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGN 157 (312)
T ss_dssp HHHH-HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHH
T ss_pred HHhh-hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHH
Confidence 3443 4444443344566665435667899999999999999999987 688999999 77776654
No 31
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=97.49 E-value=5.4e-05 Score=63.73 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=37.1
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHC--CCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKY--PSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~--P~l~~~v~Dl-P~vi~~a~ 238 (241)
.+...+|||||||+|.++..+++.+ |+++++.+|+ |..++.|+
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~ 113 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCR 113 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence 3556899999999999999999985 6789999999 88887765
No 32
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=97.49 E-value=8e-05 Score=60.14 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=37.1
Q ss_pred HHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHh
Q 044458 190 LENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQ 235 (241)
Q Consensus 190 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~ 235 (241)
+..++ .....+|||||||+|.++..+++.+|+.+++.+|+ |..++
T Consensus 20 ~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~ 65 (218)
T 3mq2_A 20 FEQLR-SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRME 65 (218)
T ss_dssp HHHHH-TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGH
T ss_pred HHHhh-ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence 33444 45568999999999999999999999999999999 55333
No 33
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=97.48 E-value=4.7e-05 Score=61.49 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=36.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||||||+|.++..+++.+|..+++.+|+ |..++.++
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~ 70 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQ 70 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHH
Confidence 3467999999999999999999999999999999 77777654
No 34
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=97.46 E-value=0.00017 Score=59.09 Aligned_cols=50 Identities=24% Similarity=0.435 Sum_probs=37.8
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
.+...++.+....+|||||||.|.++..+++. +.+++.+|+ |..++.+++
T Consensus 31 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~ 81 (240)
T 3dli_A 31 RLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEG 81 (240)
T ss_dssp HHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHT
T ss_pred HHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHh
Confidence 34444442456689999999999999999998 557899999 777766543
No 35
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=97.46 E-value=0.00016 Score=57.94 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=39.1
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+++.+.......+|||||||.|.++..+++. ..+++.+|+ |..++.++
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~ 85 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAG 85 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHG
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHH
Confidence 344554443555679999999999999999999 668999998 77777664
No 36
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=97.46 E-value=4.5e-05 Score=61.64 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=37.0
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||||||+|.++..+++.+|..+++.+|+ |..++.++
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~ 70 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAK 70 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHH
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence 3468999999999999999999999999999999 77777654
No 37
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=97.46 E-value=8.8e-05 Score=62.80 Aligned_cols=42 Identities=21% Similarity=0.494 Sum_probs=37.3
Q ss_pred CCCCeEEEecCCc---hHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGI---GASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~---G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.+..+|||||||. |.+...+.+.+|+.+++.+|+ |.+++.|+
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar 121 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGR 121 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHH
Confidence 3468999999999 999888889999999999999 88888765
No 38
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=97.44 E-value=5.4e-05 Score=62.66 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=35.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 237 (241)
.+..+|||||||.|.++..+++.+|+.+++.+|+ +.+++.|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A 86 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYV 86 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHH
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHH
Confidence 3457999999999999999999999999999999 7776644
No 39
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=97.44 E-value=7.6e-05 Score=61.65 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=41.9
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.+++.++ .....+|||||||+|.++..+++.+|..+++..|+ |..++.++
T Consensus 24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~ 74 (259)
T 2p35_A 24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAA 74 (259)
T ss_dssp HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHH
T ss_pred HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 4555565 56678999999999999999999999999999999 77776553
No 40
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=97.44 E-value=4.7e-05 Score=66.01 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=37.2
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 200 QSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 200 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
.+|||||||.|.++..+++.+|+.++++.|+ |.+++.|++
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~ 131 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSRE 131 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHH
Confidence 4999999999999999999999999999999 899988764
No 41
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=97.40 E-value=0.00014 Score=59.98 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=40.8
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..++..++ .....+|||||||+|.++..+++.+ +.+++.+|+ |..++.++
T Consensus 26 ~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~ 76 (256)
T 1nkv_A 26 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAK 76 (256)
T ss_dssp HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHH
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHH
Confidence 44555565 6677899999999999999999998 678999999 77776653
No 42
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00016 Score=61.45 Aligned_cols=42 Identities=29% Similarity=0.327 Sum_probs=37.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHC-CCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKY-PSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||||||+|.++..+++.+ |..+++.+|+ |..++.|+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~ 78 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAE 78 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH
Confidence 467899999999999999999998 8999999999 77777654
No 43
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=97.39 E-value=0.00011 Score=62.49 Aligned_cols=50 Identities=20% Similarity=0.394 Sum_probs=42.1
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+++.++ .....+|||||||.|.++..+++.++ .+++.+|+ |..++.|+
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~ 112 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDK 112 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHH
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHH
Confidence 45666666 77778999999999999999999988 89999999 77776654
No 44
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=97.37 E-value=6e-05 Score=62.41 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=43.1
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHH-CCCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISK-YPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..++...+ .....+|||||||+|.++..+++. .|..+++.+|+ |..++.|+
T Consensus 83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~ 135 (255)
T 3mb5_A 83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAW 135 (255)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHH
T ss_pred HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHH
Confidence 34555666 677789999999999999999999 89999999999 77777654
No 45
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=97.37 E-value=4e-05 Score=63.34 Aligned_cols=40 Identities=15% Similarity=0.082 Sum_probs=34.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||.|..+..+++..|. +.+++|+ |.+++.|+
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~ 100 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLR 100 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHH
T ss_pred CCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHH
Confidence 3579999999999999999988875 7889999 88888765
No 46
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=97.36 E-value=0.00013 Score=61.68 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=39.4
Q ss_pred HHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCC-CcEEEccc-hHHHhcC
Q 044458 189 FLENYKGFEGLQSVVDVGGGIGASLDMIISKYPS-IKGINFDL-PHVIQDA 237 (241)
Q Consensus 189 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~a 237 (241)
+++.+.......+|||||||+|.++..+++.+|+ .+++..|+ |..++.+
T Consensus 13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a 63 (284)
T 3gu3_A 13 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEA 63 (284)
T ss_dssp HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHH
T ss_pred HHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence 3444322567799999999999999999999995 89999999 6766644
No 47
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=97.36 E-value=6.5e-05 Score=60.13 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=39.2
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+++.++ .+.. +|||||||+|.++..+++. |+.+++.+|+ |..++.++
T Consensus 34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~ 83 (219)
T 3dlc_A 34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIAL 83 (219)
T ss_dssp HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHH
T ss_pred HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHH
Confidence 34455555 4444 9999999999999999999 8899999999 77776654
No 48
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=97.35 E-value=7.5e-05 Score=60.15 Aligned_cols=51 Identities=24% Similarity=0.284 Sum_probs=43.0
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHC-CCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKY-PSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+++.++ .....+|||||||.|.++..+++.. |+.+++.+|. |..++.++
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 79 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAW 79 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH
Confidence 45666666 7777899999999999999999997 8899999999 77776553
No 49
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=97.34 E-value=0.00014 Score=60.87 Aligned_cols=43 Identities=23% Similarity=0.443 Sum_probs=38.2
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
+....+|||||||.|.++..+++.+|+.+++.+|+ |..++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~ 78 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKAR 78 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHH
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 56778999999999999999999999999999999 77776553
No 50
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=97.33 E-value=9.3e-05 Score=61.27 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=36.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 237 (241)
....+|||||||+|.++..+++.+|+.+++.+|. +.+++.+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a 89 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYV 89 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHH
Confidence 3568999999999999999999999999999998 6776654
No 51
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=97.31 E-value=0.00012 Score=60.43 Aligned_cols=50 Identities=26% Similarity=0.475 Sum_probs=41.2
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+++.++ .....+|||||||.|.++..+++.+ +.+++.+|+ |..++.++
T Consensus 45 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~ 95 (266)
T 3ujc_A 45 KKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMAN 95 (266)
T ss_dssp HHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHH
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHH
Confidence 45556665 6677899999999999999999998 789999999 77776554
No 52
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=97.30 E-value=0.00012 Score=60.66 Aligned_cols=51 Identities=24% Similarity=0.362 Sum_probs=41.1
Q ss_pred hHHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 185 TMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 185 ~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+++.++ .....+|||||||.|.++..+++..+ +++.+|+ |..++.++
T Consensus 25 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~ 76 (260)
T 1vl5_A 25 DLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVAR 76 (260)
T ss_dssp CHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHH
Confidence 3456666666 66778999999999999999999986 8899998 77776543
No 53
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=97.29 E-value=0.00022 Score=59.42 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=41.2
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+++.++ .....+|||||||.|.++..+++.+ +.+++.+|+ |..++.++
T Consensus 51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~ 101 (273)
T 3bus_A 51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQAN 101 (273)
T ss_dssp HHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHH
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHH
Confidence 45666666 6777899999999999999999987 689999999 66666543
No 54
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=97.28 E-value=0.00017 Score=58.04 Aligned_cols=47 Identities=6% Similarity=0.036 Sum_probs=38.0
Q ss_pred HHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 189 FLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 189 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
++..+. .....+|||||||+|.++..+++. +.+++.+|+ |..++.|+
T Consensus 14 ~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~ 61 (203)
T 1pjz_A 14 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYF 61 (203)
T ss_dssp HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHH
T ss_pred HHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHH
Confidence 344444 566789999999999999999997 568999999 78887664
No 55
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=97.28 E-value=0.00021 Score=63.29 Aligned_cols=50 Identities=22% Similarity=0.281 Sum_probs=41.7
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.+++.++ .....+|+|||||+|.++..+++.+|..+++.+|. |..++.++
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar 263 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSR 263 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHH
Confidence 4556665 44448999999999999999999999999999999 77777654
No 56
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=97.27 E-value=0.00022 Score=58.79 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=39.0
Q ss_pred HHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 189 FLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 189 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
++..+.......+|||||||.|.++..+++.+|. +++.+|+ |..++.++
T Consensus 37 ~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~ 86 (257)
T 3f4k_A 37 AVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFN 86 (257)
T ss_dssp HHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHH
Confidence 3444432566689999999999999999999986 9999999 77776543
No 57
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=97.26 E-value=8.1e-05 Score=59.47 Aligned_cols=40 Identities=18% Similarity=0.062 Sum_probs=35.7
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 199 LQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 199 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+|||||||+|.++..+++.+|+.+++.+|. |..++.++
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~ 106 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLR 106 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 57999999999999999999999999999999 77776553
No 58
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=97.26 E-value=0.00022 Score=58.17 Aligned_cols=49 Identities=18% Similarity=0.139 Sum_probs=37.6
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.+...++ .....+|||||||+|.++..+++..+ .+++.+|+ |..++.++
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~ 83 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARAR 83 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHH
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHH
Confidence 4555555 45668999999999999999998833 27899998 67776654
No 59
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=97.23 E-value=0.0002 Score=59.68 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=38.6
Q ss_pred HHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 190 LENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 190 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
+..++......+|||||||.|.++..+++. |..+++.+|+ |..++.++
T Consensus 38 l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~ 86 (267)
T 3kkz_A 38 LSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFN 86 (267)
T ss_dssp HTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHH
T ss_pred HHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHH
Confidence 333332556789999999999999999999 8899999999 77766543
No 60
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=97.23 E-value=0.00012 Score=60.99 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=37.2
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.....+|||||||+|..++.++..+|+.+++.+|. +..++.++
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~ 121 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVE 121 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999999998 66666543
No 61
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=97.22 E-value=0.00026 Score=58.32 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=38.9
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.+.+.++ .....+|||||||+|.++..+++..+. +++.+|+ |..++.++
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~ 84 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAK 84 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHH
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHH
Confidence 4455554 445689999999999999999999775 8899999 77776654
No 62
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=97.21 E-value=0.0002 Score=57.68 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=38.4
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+++.++ ....+|||||||.|.++..+++. + .+++..|. |..++.++
T Consensus 22 ~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~ 71 (230)
T 3cc8_A 22 NPNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAK 71 (230)
T ss_dssp CHHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHH
T ss_pred HHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHH
Confidence 345555554 45689999999999999999998 4 88999999 67666554
No 63
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=97.21 E-value=9.7e-05 Score=63.31 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=37.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
....+|||||||.|.++..+++..|..++++.|+ |.+++.|++
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~ 125 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQ 125 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHH
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999888889999999 888887654
No 64
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=97.20 E-value=0.00019 Score=58.64 Aligned_cols=45 Identities=7% Similarity=0.155 Sum_probs=37.4
Q ss_pred HhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhc
Q 044458 191 ENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQD 236 (241)
Q Consensus 191 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~ 236 (241)
+.++ +....+|||||||+|.++..+++.+|..+++.+|. |..++.
T Consensus 68 ~~~~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~ 113 (230)
T 1fbn_A 68 KVMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRE 113 (230)
T ss_dssp CCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHH
T ss_pred cccC-CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHH
Confidence 3344 55678999999999999999999999888999999 666654
No 65
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=97.20 E-value=0.00026 Score=54.89 Aligned_cols=48 Identities=21% Similarity=0.140 Sum_probs=38.6
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.++..++ .....+|||||||.|.++..+++ +..+++..|. |..++.++
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~ 74 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTK 74 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHH
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHH
Confidence 4445555 56668999999999999999999 8889999998 77766553
No 66
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=97.20 E-value=0.00038 Score=55.18 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=36.9
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCC--CCcEEEccchH
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYP--SIKGINFDLPH 232 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P--~l~~~v~DlP~ 232 (241)
.+.+.|..+....+|||||||+|.++..+++.+| +.+++.+|+.+
T Consensus 12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~ 58 (201)
T 2plw_A 12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI 58 (201)
T ss_dssp HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence 4555665245668999999999999999999998 68899999854
No 67
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=97.20 E-value=0.00029 Score=54.84 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=35.4
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.....+|||||||.|.++..+++. +..+++.+|+ |..++.++
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~ 71 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQ 71 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHH
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHH
Confidence 345689999999999999999987 6678999999 77777654
No 68
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=97.17 E-value=0.00019 Score=60.03 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=38.0
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.....+|||||||+|.++..+++++|+.+++.+|+ |..++.|+
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~ 77 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFAR 77 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHH
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence 45568999999999999999999999999999999 77777654
No 69
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=97.17 E-value=0.00028 Score=60.67 Aligned_cols=52 Identities=23% Similarity=0.338 Sum_probs=43.3
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+++.++ .....+|||+|||.|.++..+++++|+.+++.+|. |..++.|+
T Consensus 15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~ 67 (301)
T 1m6y_A 15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAE 67 (301)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 345556665 56668999999999999999999999999999999 78887664
No 70
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=97.16 E-value=0.00025 Score=59.79 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=39.3
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+++..+ .....+|||||||+|.++..++++ ..+++.+|+ |..++.|+
T Consensus 35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar 84 (261)
T 3iv6_A 35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLA 84 (261)
T ss_dssp HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHH
Confidence 45566666 667789999999999999999987 457899999 77777654
No 71
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=97.15 E-value=0.00027 Score=59.72 Aligned_cols=49 Identities=12% Similarity=0.287 Sum_probs=39.4
Q ss_pred HHHHHhc----CCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcC
Q 044458 187 KKFLENY----KGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 187 ~~~~~~~----~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 237 (241)
..+++.+ + +....+|||||||.|.++..+++.+ +.+++.+|+ |..++.+
T Consensus 68 ~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a 121 (297)
T 2o57_A 68 EWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRN 121 (297)
T ss_dssp HHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHH
T ss_pred HHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHH
Confidence 4555555 4 6677899999999999999999987 468999999 6666654
No 72
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=97.15 E-value=0.00028 Score=56.80 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=38.8
Q ss_pred HHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 189 FLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 189 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
++..++ .....+|||||||+|.++..+++. ..+++.+|+ |+.++.|+
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~ 94 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQ 94 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHH
Confidence 445555 666789999999999999999998 788999999 77777654
No 73
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=97.13 E-value=0.00018 Score=62.73 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=41.5
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+++.++ .....+|||||||+|.++..+++.+|+.+++.+|. |..++.++
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~ 237 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASR 237 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHH
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 44566664 44457999999999999999999999999999999 66676554
No 74
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=97.12 E-value=0.00021 Score=58.63 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=35.3
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccch
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLP 231 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP 231 (241)
..+.+.+. ....+|||||||.|.++..+++++|+.+++.+|+-
T Consensus 15 ~~~~~~~~--~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s 57 (225)
T 3p2e_A 15 DELTEIIG--QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPV 57 (225)
T ss_dssp HHHHHHHT--TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSC
T ss_pred HHHHHHhC--CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCC
Confidence 34444443 34579999999999999999999999999999993
No 75
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=97.12 E-value=0.00036 Score=58.45 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHhcchh----hHHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHH-CCCCcEEEccc-hHHHhcCC
Q 044458 167 DLRLNKIFNNGMFSHSTI----TMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISK-YPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 167 ~~~~~~~f~~aM~~~~~~----~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a~ 238 (241)
+|... .|...|...... ....++..++ .....+|||||||+|.++..+++. .|..+++.+|+ |..++.|+
T Consensus 66 ~p~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~ 141 (280)
T 1i9g_A 66 RPLLV-DYVMSMPRGPQVIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHAR 141 (280)
T ss_dssp CCCHH-HHHTTSCSCSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHH
T ss_pred CCCHH-HHHhhccccceeecHHHHHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 44433 344555443332 2334556666 777789999999999999999996 68899999999 77776654
No 76
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=97.12 E-value=0.00018 Score=61.28 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=35.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||+|.++..+++. |+.+++..|+ |..++.|+
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~ 163 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIAR 163 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHH
Confidence 3469999999999999999999 9999999999 88887664
No 77
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=97.12 E-value=0.00038 Score=58.52 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=36.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||+|.++..+++.+|+.+++..|. |..++.++
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~ 150 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQ 150 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHH
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 457999999999999999999999999999999 77776654
No 78
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=97.11 E-value=0.00018 Score=59.05 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=37.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||||||.|..+..+++.+|+.+++.+|+ |..++.|+
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~ 112 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAK 112 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHH
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 3468999999999999999999999999999999 77777654
No 79
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=97.11 E-value=0.00015 Score=59.64 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=37.2
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
+....+|||||||+|.++..+++.+|+.+++.+|. |..++.++
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~ 111 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLE 111 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 44568999999999999999999999999999999 76766553
No 80
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=97.10 E-value=0.00032 Score=58.86 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=36.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCCCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPAYP 241 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~~ 241 (241)
...+|||||||+|.++..+++.+. +++..|+ |..++.|+++|
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~~~ 81 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALRHP 81 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCCCT
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhhcC
Confidence 347899999999999999999874 6788999 78899988765
No 81
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=97.10 E-value=0.0002 Score=56.14 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=35.3
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.....+|||||||+|.++..+++. ..+++.+|+ |..++.|+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~ 61 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTS 61 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHH
Confidence 455689999999999999999988 788999999 77777654
No 82
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=97.09 E-value=0.00033 Score=58.89 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=40.0
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+++.++ .....+|||||||.|.++..+++.++. +++.+|+ |..++.++
T Consensus 54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~ 104 (287)
T 1kpg_A 54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQ 104 (287)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHH
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHH
Confidence 35566666 667789999999999999999987754 9999999 77766553
No 83
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=97.09 E-value=0.00046 Score=56.89 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=42.5
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHH-CCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISK-YPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.++..++ +....+|||+|||+|.++..+++. .|..+++.+|+ |..++.++
T Consensus 87 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~ 138 (258)
T 2pwy_A 87 AMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAE 138 (258)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHH
T ss_pred HHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 4566666 777789999999999999999999 78999999998 77776654
No 84
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=97.08 E-value=0.00034 Score=59.81 Aligned_cols=50 Identities=14% Similarity=0.331 Sum_probs=40.9
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+++.++ .....+|||||||.|.++..+++.+ +.+++.+|+ |..++.++
T Consensus 80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~ 130 (318)
T 2fk8_A 80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCE 130 (318)
T ss_dssp HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHH
T ss_pred HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHH
Confidence 45566666 6677899999999999999999987 679999999 77776553
No 85
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=97.06 E-value=0.00015 Score=61.50 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=37.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
...+|||||||.|.++..+++.+|..++++.|+ |.+++.|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~ 117 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKK 117 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHH
Confidence 468999999999999999998878889999999 888887764
No 86
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=97.05 E-value=0.00017 Score=59.76 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=36.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||+|.++..+++++|+.+++.+|+ |..++.|+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~ 106 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAK 106 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence 457999999999999999999999999999999 78777654
No 87
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=97.05 E-value=0.00037 Score=57.16 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=40.0
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 237 (241)
...+++..+ .....+|||||||.|.++..+++.++ +++.+|+ |..++.+
T Consensus 10 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a 59 (239)
T 1xxl_A 10 LGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVA 59 (239)
T ss_dssp HHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHH
T ss_pred cchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHH
Confidence 345666666 77789999999999999999999886 7888998 6666654
No 88
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=97.05 E-value=0.00028 Score=57.58 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=36.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||.|..+..+++.+|+.+++.+|. |..++.|+
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~ 95 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAH 95 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 457999999999999999999999999999999 77776654
No 89
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=97.05 E-value=0.00053 Score=57.60 Aligned_cols=51 Identities=16% Similarity=0.110 Sum_probs=42.6
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHH-CCCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISK-YPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..++..++ +....+|||+|||+|.++..+++. .|..+++.+|. |..++.|+
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~ 154 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAE 154 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHH
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH
Confidence 34556666 777789999999999999999999 78999999998 77776654
No 90
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=97.04 E-value=0.00043 Score=55.55 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=40.0
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHC-CCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKY-PSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~ 238 (241)
.+++.++ .....+|||||||.|.++..+++.. |+.+++..|. |..++.++
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~ 119 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAE 119 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHH
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 4444555 5667899999999999999999988 7789999998 67666553
No 91
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=97.03 E-value=0.00018 Score=59.23 Aligned_cols=50 Identities=20% Similarity=0.387 Sum_probs=39.5
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+++.++ .....+|||||||.|.++..+++.. ..+++.+|. |..++.++
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~ 133 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAK 133 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHH
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHH
Confidence 35555665 5667899999999999999999987 556899998 77776554
No 92
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=97.03 E-value=0.00094 Score=52.58 Aligned_cols=45 Identities=22% Similarity=0.165 Sum_probs=36.0
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCC---------CcEEEccchH
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPS---------IKGINFDLPH 232 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~---------l~~~v~DlP~ 232 (241)
.+.+.++.+....+|||||||+|.++..+++.++. .+++.+|+-+
T Consensus 12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~ 65 (196)
T 2nyu_A 12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLH 65 (196)
T ss_dssp HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSC
T ss_pred HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechh
Confidence 34445553456689999999999999999999875 7899999854
No 93
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=97.01 E-value=0.00045 Score=53.93 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=39.3
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+++.++ .....+|||||||.|.++..+++. ..+++..|+ |..++.++
T Consensus 42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~ 91 (194)
T 1dus_A 42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAK 91 (194)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHH
T ss_pred HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHH
Confidence 34555555 666789999999999999999998 778999998 77776553
No 94
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=97.01 E-value=0.0003 Score=55.74 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=36.6
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHC-CCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKY-PSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~ 238 (241)
.....+|||||||+|.++..+++.+ |+.+++.+|+ |..++.|+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~ 64 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTT 64 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHH
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 4456799999999999999999986 7789999999 77777654
No 95
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=97.00 E-value=0.00033 Score=56.35 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=37.4
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|+|+|||.|.++..++...|+.+.+..|. +..++.++
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar 90 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLS 90 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence 4578999999999999999999999999999999 67777654
No 96
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=97.00 E-value=0.00031 Score=56.85 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=36.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCC-CCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYP-SIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||||||+|..+..+++.+| +.+++.+|+ |..++.|+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~ 100 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIAR 100 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHH
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 3468999999999999999999999 889999999 77776654
No 97
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=97.00 E-value=0.0005 Score=54.11 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=38.2
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.+++.++ .....+|||||||.|.++..+++. +.+++.+|. |..++.++
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~ 71 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVE 71 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHH
Confidence 4555555 555679999999999999999988 678999999 77776653
No 98
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=97.00 E-value=0.0007 Score=52.77 Aligned_cols=42 Identities=14% Similarity=0.010 Sum_probs=34.8
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.....+|||+|||+|.++..+++ .+..+++.+|+ |..++.++
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~ 84 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIK 84 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHH
T ss_pred hcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHH
Confidence 44568999999999999999887 56678999999 77777654
No 99
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=96.99 E-value=0.00069 Score=60.75 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=40.7
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 237 (241)
..+++.++ .....+|||||||.|.+++.+++.++.-+++.+|+ |..++.|
T Consensus 163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelA 213 (438)
T 3uwp_A 163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYA 213 (438)
T ss_dssp HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHH
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 45566666 77788999999999999999999988767999999 5566554
No 100
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=96.99 E-value=0.00047 Score=57.85 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=39.6
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+++.++ .....+|||||||+|.++..+++ |..+++.+|+ |..++.++
T Consensus 47 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~ 96 (279)
T 3ccf_A 47 EDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKAR 96 (279)
T ss_dssp CHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHH
Confidence 34555565 56678999999999999999999 8889999999 77666553
No 101
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=96.99 E-value=0.00055 Score=57.56 Aligned_cols=41 Identities=10% Similarity=-0.019 Sum_probs=37.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPAY 240 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~ 240 (241)
...+|||||||+|.++..+++. + .+++..|+ |.+++.|+++
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~ 113 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISF 113 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTT
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHH
Confidence 4589999999999999999998 7 88999999 8999998865
No 102
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=96.98 E-value=0.00033 Score=57.94 Aligned_cols=41 Identities=22% Similarity=0.141 Sum_probs=36.7
Q ss_pred CCCeEEEecCCchHHHHHHHHH--CCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISK--YPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~--~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|+|+|||+|.++..+++. +|..+++.+|+ |.+++.|+
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~ 94 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAA 94 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHH
Confidence 4579999999999999999998 88889999999 88887765
No 103
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=96.98 E-value=0.0007 Score=61.08 Aligned_cols=49 Identities=8% Similarity=0.192 Sum_probs=39.8
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 237 (241)
.+++.++ .....+|||||||+|.++..+++.++..+++.+|+ |..++.|
T Consensus 233 ~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A 282 (433)
T 1u2z_A 233 DVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLT 282 (433)
T ss_dssp HHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHH
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 4455555 66778999999999999999999998888999999 5555544
No 104
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=96.98 E-value=0.00075 Score=56.32 Aligned_cols=52 Identities=27% Similarity=0.474 Sum_probs=41.4
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
...+++..+ .....+|||||||.|.++..+++. +..+++.+|+ +..++.+++
T Consensus 20 ~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~ 72 (249)
T 3ftd_A 20 LKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKS 72 (249)
T ss_dssp HHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTT
T ss_pred HHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHh
Confidence 345666666 666789999999999999999987 5678999999 777776654
No 105
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=96.98 E-value=0.00022 Score=59.48 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=36.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|+|||||+|.+++.+++..|..+++..|+ |..++.|+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~ 62 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQ 62 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 3457999999999999999999999999999999 77777654
No 106
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=96.98 E-value=0.00057 Score=55.98 Aligned_cols=41 Identities=20% Similarity=0.392 Sum_probs=34.6
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.....+|||||||+|.++..+++..+ +++.+|. |.+++.++
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~ 95 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAA 95 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHH
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHH
Confidence 34568999999999999999999998 7888898 77776653
No 107
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=96.98 E-value=0.00099 Score=55.42 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=37.1
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHC-CCCcEEEccch
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKY-PSIKGINFDLP 231 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~DlP 231 (241)
.+++.++ .....+|||||||.|.++..+++.+ |+.+++.+|+-
T Consensus 34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s 77 (275)
T 3bkx_A 34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIA 77 (275)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSS
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECC
Confidence 5566666 6777899999999999999999996 88999999993
No 108
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=96.97 E-value=0.0002 Score=58.21 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=36.4
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCC-CCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYP-SIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||||||.|..+..+++.+| +.+++.+|. |..++.++
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~ 111 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGR 111 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHH
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 3468999999999999999999988 789999999 77776654
No 109
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.96 E-value=0.00039 Score=46.07 Aligned_cols=55 Identities=15% Similarity=0.277 Sum_probs=45.6
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecC
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLA 107 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t 107 (241)
+..|+++|...+ .++|..|||+.+|+ +...+.+.|..|...|++... + .++|+++
T Consensus 12 ~~~IL~~L~~~~--~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~----~----~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDG--GPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP----S----PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHC--SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE----E----TTEEEEC
T ss_pred HHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecC----C----CceEeeC
Confidence 556888997753 58999999999999 999999999999999998653 1 4677754
No 110
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=96.96 E-value=0.00037 Score=55.91 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=35.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCC-CCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYP-SIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||.|..+..+++.+| +.+++.+|+ |..++.|+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~ 98 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHAR 98 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 357999999999999999999998 889999999 77776654
No 111
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.96 E-value=0.00075 Score=46.50 Aligned_cols=65 Identities=22% Similarity=0.330 Sum_probs=49.4
Q ss_pred HHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 37 AIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 37 a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
-.+..|.++|.+.+++.++|+.|||+++|+ +...+++.|..|...|++... |..++.|...+...
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~------g~~~~~W~i~~~~~ 74 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE------AGTPPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------SSSSCEEEEC----
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec------CCCCCeeEEeCcHH
Confidence 346668888988654458999999999999 999999999999999999864 11157787776554
No 112
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=96.96 E-value=0.00025 Score=60.93 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=37.6
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
....+|||||||.|.++..+++..|..++++.|+ |.+++.+++
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~ 137 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQ 137 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 4468999999999999999999888889999999 888877653
No 113
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=96.95 E-value=0.00066 Score=54.41 Aligned_cols=48 Identities=21% Similarity=0.260 Sum_probs=37.4
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.++..+. .....+|||||||.|.++..+++. +.+++.+|+ |..++.++
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~ 91 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAAR 91 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHH
Confidence 3444444 344589999999999999999998 668899999 77776654
No 114
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=96.95 E-value=0.00037 Score=56.39 Aligned_cols=41 Identities=22% Similarity=0.127 Sum_probs=35.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCC-CCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYP-SIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||.|..+..+++.+| +.+++.+|. |..++.++
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~ 106 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAK 106 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH
Confidence 357999999999999999999998 789999999 77776554
No 115
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=96.94 E-value=0.00066 Score=55.91 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=33.9
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.....+|||||||+|.++..+++. +.+++..|+ |..++.++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~ 78 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFR 78 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 566789999999999999999987 568899998 66666543
No 116
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=96.92 E-value=0.00072 Score=54.07 Aligned_cols=41 Identities=15% Similarity=0.291 Sum_probs=34.1
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
+....+|||||||.|.++..+++. +.+++.+|+ |..++.++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~ 82 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEAS 82 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHH
Confidence 445689999999999999999988 568899999 77776553
No 117
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=96.92 E-value=0.00027 Score=58.44 Aligned_cols=42 Identities=14% Similarity=-0.043 Sum_probs=36.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|+|||||+|.+++.+++..|..+++..|+ |..++.|+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~ 62 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSAL 62 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 3457999999999999999999999999999999 77777654
No 118
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=96.92 E-value=0.00052 Score=59.92 Aligned_cols=52 Identities=19% Similarity=0.014 Sum_probs=43.8
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHC-CCCcEEEccc-hHHHhcCC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKY-PSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~ 238 (241)
+..++.... |....+|||+|||+|.+++.++... |+.+++..|+ |.+++.|+
T Consensus 192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~ 245 (354)
T 3tma_A 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAR 245 (354)
T ss_dssp HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHH
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHH
Confidence 344555556 8888999999999999999999998 9999999999 78887664
No 119
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=96.92 E-value=0.00024 Score=61.93 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=38.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
....+|||||||.|.++..+++..|..+++..|+ |.+++.|++
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~ 162 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQ 162 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999888899999999 888887653
No 120
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=96.91 E-value=0.00044 Score=55.57 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=37.1
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.+++.+. .....+|||||||.|.++..+++. +.+++.+|+ |..++.++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~ 84 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAK 84 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHH
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHH
Confidence 3444443 345689999999999999999998 678999999 77766553
No 121
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=96.91 E-value=0.0013 Score=53.93 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=37.2
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.++..+. .....+|||||||+|.++..+++. +.+++.+|+ |..++.++
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~ 80 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVAR 80 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHH
Confidence 3444443 345689999999999999999987 668999999 77776654
No 122
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=96.91 E-value=0.0004 Score=57.58 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=37.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCC-CCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYP-SIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||||||+|..+..+++.+| +.+++.+|+ |..++.|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~ 105 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVAR 105 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHH
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 3468999999999999999999999 889999999 77777654
No 123
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=96.89 E-value=0.00082 Score=55.74 Aligned_cols=49 Identities=10% Similarity=0.278 Sum_probs=39.0
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 237 (241)
...+++..+ .....+|||||||+|.++..++++. .+++.+|+ |..++.+
T Consensus 19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a 68 (244)
T 1qam_A 19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTT 68 (244)
T ss_dssp HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHH
T ss_pred HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHH
Confidence 345566665 6667899999999999999999986 67899998 6666654
No 124
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=96.89 E-value=0.0009 Score=53.43 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=38.6
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.++..++ .....+|||||||+|.++..+++. ..+++.+|. |..++.++
T Consensus 68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~ 116 (210)
T 3lbf_A 68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQAR 116 (210)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHH
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHH
Confidence 3455555 667789999999999999999998 678899999 77776554
No 125
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=96.88 E-value=0.00045 Score=59.26 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=38.0
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
.....+|||||||+|.++..++.+.++.+++.+|+ |+.++.|++
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~ 164 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRK 164 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHH
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHH
Confidence 66789999999999988877777788999999999 888887764
No 126
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=96.88 E-value=0.00051 Score=53.65 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=36.5
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.++..+ .....+|||||||.|.++..+++. +.+++..|. |..++.++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~ 85 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAK 85 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHH
Confidence 455554 345689999999999999999988 568899998 66666543
No 127
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=96.88 E-value=0.00043 Score=53.14 Aligned_cols=39 Identities=15% Similarity=-0.003 Sum_probs=33.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||+|||+|.++..+++..++ ++.+|+ |..++.++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~ 80 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLK 80 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHH
Confidence 4579999999999999999999877 899999 77777654
No 128
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=96.88 E-value=0.00059 Score=57.35 Aligned_cols=47 Identities=26% Similarity=0.345 Sum_probs=36.9
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.++..++ .. ..+|||||||.|.++..+++. +.+++.+|+ |..++.++
T Consensus 60 ~~l~~~~-~~-~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~ 107 (285)
T 4htf_A 60 RVLAEMG-PQ-KLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAK 107 (285)
T ss_dssp HHHHHTC-SS-CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHhcC-CC-CCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 4445544 23 579999999999999999998 678999999 77776654
No 129
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=96.88 E-value=0.0013 Score=53.27 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=33.0
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHH
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHV 233 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~v 233 (241)
.....+|||||||+|.++..+++..++.+++.+|+ |..
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~ 93 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKP 93 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHH
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHH
Confidence 45568999999999999999999998778999999 543
No 130
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=96.88 E-value=0.0006 Score=56.24 Aligned_cols=40 Identities=20% Similarity=0.086 Sum_probs=35.0
Q ss_pred CCeEEEecCCchHHHHHHHHH----CCCCcEEEccc-hHHHhcCC
Q 044458 199 LQSVVDVGGGIGASLDMIISK----YPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 199 ~~~vvDVGGG~G~~~~~l~~~----~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+|||||||+|..+..+++. +|+.+++.+|+ |+.++.|+
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~ 126 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA 126 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh
Confidence 479999999999999999998 79999999999 67666554
No 131
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=96.87 E-value=0.00026 Score=60.84 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=38.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
....+|||||||.|.++..+++..|..+++..|+ |.+++.|++
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~ 137 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKK 137 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999988899999999 888887654
No 132
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=96.86 E-value=0.00028 Score=60.92 Aligned_cols=42 Identities=26% Similarity=0.383 Sum_probs=37.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
...+|||||||.|.++..+++..|..+++..|+ |.+++.|++
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~ 119 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKR 119 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence 458999999999999999999888889999999 888887653
No 133
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=96.86 E-value=0.00027 Score=61.29 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=37.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
...+|||||||+|.++..+++..|..+++..|+ |.+++.|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~ 158 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKI 158 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHH
Confidence 458999999999999999999888899999999 888887653
No 134
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=96.86 E-value=0.0003 Score=60.82 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=37.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
...+|||||||.|..+..+++..|..+++..|+ |.+++.|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~ 150 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKK 150 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHH
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHH
Confidence 458999999999999999999888899999999 888887653
No 135
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=96.85 E-value=0.00028 Score=59.96 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=37.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
....+|||||||.|..+..+++..|..++++.|+ |.+++.+++
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~ 120 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKI 120 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHH
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999888899999999 888887653
No 136
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=96.85 E-value=0.00048 Score=55.82 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=35.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCC-CCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYP-SIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||.|..+..+++..| +.+++.+|+ |..++.|+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~ 100 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQ 100 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHH
Confidence 468999999999999999999875 889999999 77777654
No 137
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=96.84 E-value=0.00088 Score=54.70 Aligned_cols=40 Identities=10% Similarity=0.020 Sum_probs=34.6
Q ss_pred CCeEEEecCCchHHHHHHHHHCC-CCcEEEccc-hHHHhcCC
Q 044458 199 LQSVVDVGGGIGASLDMIISKYP-SIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 199 ~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 238 (241)
..+|||||||+|..+..+++++| +.+++.+|+ |+.++.|+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~ 98 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAK 98 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 34999999999999999999986 889999999 77776654
No 138
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=96.84 E-value=0.0004 Score=58.47 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=33.7
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.....+|||||||+|.++..+++..+ +++..|+ |..++.++
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~ 96 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYAL 96 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHH
T ss_pred ccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHH
Confidence 34468999999999999999999844 8899999 67776653
No 139
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=96.84 E-value=0.00062 Score=56.64 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=36.5
Q ss_pred CC-CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FE-GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.. ...+|||||||+|.++..++++.+. +++.+|+ |..++.|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~ 89 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAK 89 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHH
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHH
Confidence 56 6789999999999999999999877 8999999 77776654
No 140
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=96.84 E-value=0.00028 Score=60.34 Aligned_cols=42 Identities=26% Similarity=0.365 Sum_probs=37.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
...+|||||||.|.++..+++..|..++++.|+ |.+++.+++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~ 132 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARK 132 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence 348999999999999999999888899999999 888887653
No 141
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=96.84 E-value=0.00028 Score=59.83 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=36.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
...+|||||||.|.++..+++. |..+++..|+ |.+++.|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~ 116 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKD 116 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHH
Confidence 4589999999999999999998 8889999999 888887653
No 142
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=96.84 E-value=0.00069 Score=56.16 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=33.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||||||.|.++..+++..+ +++.+|+ |..++.++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~ 89 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIAR 89 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHH
Confidence 4458999999999999999999864 6888999 77777654
No 143
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.83 E-value=0.00087 Score=47.28 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=50.9
Q ss_pred HHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 32 MVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 32 ~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
.++..-.++.|++.| . ++.|..|||+.+++ +...+.+.|+.|...|++... .+.|.+++.++
T Consensus 26 ~~l~~~~r~~Il~~L-~----~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~---------~g~y~l~~~g~ 87 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D----KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV---------GERWVVTDAGK 87 (96)
T ss_dssp HHHSCHHHHHHHHHH-H----TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECTTTC
T ss_pred HHhCCHHHHHHHHHH-c----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---------CCEEEECCCch
Confidence 344444567788888 5 58999999999999 999999999999999999974 24788887654
No 144
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=96.83 E-value=0.00048 Score=57.23 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=36.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCC-CCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYP-SIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 238 (241)
+..+|||||||+|..+..+++.+| +.+++.+|+ |..++.|+
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~ 121 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGL 121 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHH
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 467999999999999999999998 789999999 77776654
No 145
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=96.82 E-value=0.00062 Score=55.56 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=31.9
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHC-CCCcEEEccc
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKY-PSIKGINFDL 230 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl 230 (241)
+....+|||||||+|.++..+++.+ |+.+++.+|+
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~ 110 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEF 110 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEEC
Confidence 5567899999999999999999997 7889999999
No 146
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=96.82 E-value=0.00042 Score=56.36 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=32.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||+|.++..+++.++ +++.+|+ |..++.|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~ 81 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQ 81 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHH
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHH
Confidence 457899999999999999999887 5788888 66666543
No 147
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=96.81 E-value=0.0012 Score=54.09 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=35.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCC-CCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYP-SIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||.|..+..+++.+| ..+++.+|. |..++.|+
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~ 102 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVAR 102 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHH
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 467999999999999999999998 689999999 77776654
No 148
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=96.81 E-value=0.00097 Score=56.40 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=30.0
Q ss_pred CCCeEEEecCCchHHHH----HHHHHCCCCcE--EEccc-hHHHhcC
Q 044458 198 GLQSVVDVGGGIGASLD----MIISKYPSIKG--INFDL-PHVIQDA 237 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~----~l~~~~P~l~~--~v~Dl-P~vi~~a 237 (241)
...+|||||||+|.++. .++.++|+.++ +..|. ++.++.|
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a 98 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKY 98 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHH
Confidence 34799999999997654 45667798864 99998 6666544
No 149
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=96.80 E-value=0.0009 Score=52.06 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=38.3
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.++..++ .....+|||||||.|.++..+++.. .+++..|. |..++.++
T Consensus 24 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~ 72 (192)
T 1l3i_A 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTE 72 (192)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHH
T ss_pred HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHH
Confidence 3444455 6667899999999999999999988 78899999 77776553
No 150
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=96.78 E-value=0.00019 Score=55.39 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=37.7
Q ss_pred HHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 189 FLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 189 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
+++.++ .....+|||||||.|.++..+++.+. +++.+|+ |..++.++
T Consensus 9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~ 56 (170)
T 3i9f_A 9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVK 56 (170)
T ss_dssp THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHH
T ss_pred HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHH
Confidence 344455 66678999999999999999999984 8899998 77776553
No 151
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=96.76 E-value=0.0018 Score=59.17 Aligned_cols=51 Identities=22% Similarity=0.107 Sum_probs=39.6
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcCC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAP 238 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~ 238 (241)
...+++.++ .....+|||||||+|.++..+++ .+..+++.+|+.+.++.|+
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~ 197 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAE 197 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHH
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHH
Confidence 345566655 45568999999999999998887 6888999999976665543
No 152
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=96.76 E-value=0.00087 Score=57.24 Aligned_cols=64 Identities=25% Similarity=0.235 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcchhhHHHHHHhcC-CCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 171 NKIFNNGMFSHSTITMKKFLENYK-GFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 171 ~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.+.|+.++.. .....+++.+. ......+|||||||+|.++..+++ .+..+++..|+ |..++.++
T Consensus 9 lr~~~~~~k~---~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~ 74 (313)
T 3bgv_A 9 LRNFNNWMKS---VLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQ 74 (313)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHH
T ss_pred hhhccHHHHH---HHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHH
Confidence 4567776654 22233443332 123568999999999999999988 46778999999 67666543
No 153
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=96.74 E-value=0.001 Score=57.22 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=40.0
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCC-CCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYP-SIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 238 (241)
.+++..+ .....+|||||||.|.++..+++..+ +.+++..|+ |+.++.|+
T Consensus 66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~ 117 (317)
T 1dl5_A 66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK 117 (317)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence 4455555 66678999999999999999999988 478999998 77776554
No 154
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.74 E-value=0.00071 Score=46.12 Aligned_cols=61 Identities=23% Similarity=0.343 Sum_probs=48.4
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAP 108 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 108 (241)
.+..|+++|...+++.++|+.|||+++|+ +...+++.|+.|...|++.... ..++.|..++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~g------~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA------GTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEEC------SSSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC------CCCCceEecC
Confidence 35678888988654458999999999999 9999999999999999998641 1156776654
No 155
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=96.72 E-value=0.00066 Score=57.57 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=38.1
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+++.++ .. ..+|||||||+|.++..+++. +.+++.+|+ |..++.++
T Consensus 72 ~~~~~~~~~-~~-~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~ 121 (299)
T 3g2m_A 72 AREFATRTG-PV-SGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFR 121 (299)
T ss_dssp HHHHHHHHC-CC-CSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHH
T ss_pred HHHHHHhhC-CC-CCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHH
Confidence 445566655 33 349999999999999999998 578899999 77777654
No 156
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=96.72 E-value=0.0013 Score=56.95 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=41.1
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHH-CCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISK-YPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.++..++ .....+|||||||+|.++..+++. .|+.+++.+|+ |..++.|+
T Consensus 96 ~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~ 147 (336)
T 2b25_A 96 MILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAK 147 (336)
T ss_dssp HHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHH
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence 4555555 666789999999999999999998 58899999999 77776654
No 157
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=96.71 E-value=0.0015 Score=52.97 Aligned_cols=49 Identities=20% Similarity=0.290 Sum_probs=38.5
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+++.++ .....+|||||||.|.++..+++.. .+++..|. |..++.++
T Consensus 60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~ 109 (231)
T 1vbf_A 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYAS 109 (231)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHH
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHH
Confidence 34555555 6667899999999999999999987 67899998 66666543
No 158
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=96.71 E-value=0.00066 Score=57.70 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=39.8
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCC--CcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPS--IKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--l~~~v~Dl-P~vi~~a~ 238 (241)
..+++..+ .....+|||||||+|.++..++++.+. .+++.+|+ |..++.++
T Consensus 32 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~ 85 (279)
T 3uzu_A 32 DAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLE 85 (279)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHH
T ss_pred HHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHH
Confidence 34566665 666789999999999999999998765 56888898 66666543
No 159
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=96.70 E-value=0.00049 Score=56.98 Aligned_cols=41 Identities=20% Similarity=0.155 Sum_probs=35.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCC-CCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYP-SIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 238 (241)
+..+|||||||+|..+..+++..| +.+++.+|+ |+.++.|+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~ 102 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAH 102 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSH
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 368999999999999999999997 789999999 66666554
No 160
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=96.70 E-value=0.00033 Score=59.74 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=37.3
Q ss_pred CCCCCeEEEecCCchHHHHHHH-HHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMII-SKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~-~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.....+|||||||+|.++..++ ..+|+.+++.+|+ |..++.++
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~ 160 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGAT 160 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHH
Confidence 4567899999999999999996 7899999999999 77777654
No 161
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=96.69 E-value=0.0021 Score=49.05 Aligned_cols=45 Identities=22% Similarity=0.235 Sum_probs=35.6
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHC-CCCcEEEccchH
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKY-PSIKGINFDLPH 232 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~DlP~ 232 (241)
.+++.+.......+|||||||+|.++..+++.+ |+.+++..|+.+
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~ 57 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP 57 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc
Confidence 445555424556799999999999999999995 778999999854
No 162
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=96.68 E-value=0.00074 Score=55.58 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=36.6
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCC-CCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYP-SIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 238 (241)
.+..+|||||||.|..+..+++..| +.+++.+|+ |+.++.|+
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~ 112 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGL 112 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHH
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 3468999999999999999999998 789999999 77777654
No 163
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=96.68 E-value=0.0012 Score=51.47 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=30.3
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhc
Q 044458 199 LQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQD 236 (241)
Q Consensus 199 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~ 236 (241)
..+|||||||+|.++..+++.. +++.+|+ |..++.
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~ 59 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES 59 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT
T ss_pred CCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc
Confidence 4699999999999999999988 8899999 666553
No 164
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=96.67 E-value=0.00099 Score=53.03 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=34.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||||||+|.++..+++ ++..+++.+|+ |..++.|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~ 100 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAE 100 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHH
Confidence 3458999999999999999776 67789999999 77777654
No 165
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=96.66 E-value=0.001 Score=54.14 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=32.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||+|.++..+++. .+++.+|+ |..++.++
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~ 71 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQ 71 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHH
Confidence 3489999999999999999887 78999999 77776654
No 166
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=96.64 E-value=0.0012 Score=58.81 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=40.7
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
...+++.++ .....+|||||||.|.++..+++. +.+++.+|+ +..++.|++
T Consensus 96 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~ 147 (416)
T 4e2x_A 96 ARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKARE 147 (416)
T ss_dssp HHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHT
T ss_pred HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHH
Confidence 456667776 667789999999999999999987 448899999 667766543
No 167
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=96.63 E-value=0.00057 Score=55.92 Aligned_cols=41 Identities=15% Similarity=0.082 Sum_probs=32.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||||||+|.++..+++..+. +++.+|+ |..++.|+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~l~~a~ 100 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLR 100 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHH
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCC-eEEEEcCCHHHHHHHH
Confidence 34579999999999999999665443 7899999 77776654
No 168
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=96.63 E-value=0.00073 Score=56.26 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=33.6
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||||||+|.++..+++..+ +++..|+ |..++.++
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~ 159 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAE 159 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHH
Confidence 4458999999999999999999876 8899999 77776554
No 169
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.63 E-value=0.00099 Score=45.65 Aligned_cols=61 Identities=8% Similarity=0.048 Sum_probs=50.3
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcc-hHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHI-LLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~-~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
.+-.|.++|... |+.|+.+||+.+|+ ... .+++.|..|...|++.... .| ...|++|+.++
T Consensus 12 ~~~~IL~~Lk~~---g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~~----~g--RP~w~LT~~g~ 73 (79)
T 1xmk_A 12 IKEKICDYLFNV---SDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQG----TT--PPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHHT---CCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEEC----SS--SCEEEECHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEecC----CC--CCCeEeCHhHH
Confidence 355678888886 69999999999999 888 9999999999999998531 12 34899998775
No 170
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=96.62 E-value=0.001 Score=53.63 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=33.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||||||.|.++..+++. +.+++.+|+ |..++.++
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~ 69 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAE 69 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHH
Confidence 45689999999999999999998 678999999 77766543
No 171
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=96.61 E-value=0.0018 Score=52.36 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=36.1
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHC-----CCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKY-----PSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~-----P~l~~~v~Dl-P~vi~~a~ 238 (241)
.....+|||||||+|.++..+++.. |+.+++.+|. |..++.|+
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~ 126 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSL 126 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHH
Confidence 4556899999999999999999987 6789999999 77766554
No 172
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=96.60 E-value=0.00075 Score=53.68 Aligned_cols=41 Identities=12% Similarity=0.019 Sum_probs=34.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||||||.|.++..+++..+. +++..|+ |.+++.++
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~ 82 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQ 82 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHH
Confidence 44579999999999999999998765 8899999 77776553
No 173
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=96.60 E-value=0.00073 Score=56.19 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=35.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 237 (241)
....+|||||||.|.++..+++.+|+.+++.+|. |..++.+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a 125 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA 125 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence 3457999999999999999999999999999999 6666554
No 174
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=96.58 E-value=0.00089 Score=59.14 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=36.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHC-CCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKY-PSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||+|.++..+++.+ |+.+++.+|+ |..++.++
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~ 125 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVAR 125 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHH
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 45899999999999999999997 8999999999 77777654
No 175
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=96.58 E-value=0.00087 Score=55.42 Aligned_cols=51 Identities=12% Similarity=0.288 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
...+++..+ .....+|||||||.|.++..+++.. .+++.+|+ |..++.+++
T Consensus 18 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~ 69 (245)
T 1yub_A 18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSE 69 (245)
T ss_dssp HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSC
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHH
Confidence 345666666 6667899999999999999999985 77899999 777776654
No 176
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=96.57 E-value=0.0015 Score=53.04 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=34.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
....+|||||||.|.++..+++. +.+++.+|+ |..++.+++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~ 93 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKE 93 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHh
Confidence 35679999999999999999998 668899999 777776543
No 177
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=96.57 E-value=0.0015 Score=47.72 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=53.5
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhC--CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQL--PTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTK 115 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~--g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~ 115 (241)
.+..|++.|.+. |+.|+.+||+.+ ++ +...+++-|+.|...|++... | .+.|++|+.++.+..
T Consensus 14 ~d~~IL~~L~~~---g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~------~--rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 14 WDDRILEIIHEE---GNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL------A--NGVYVITEEGEAYLN 78 (111)
T ss_dssp HHHHHHHHHHHH---SCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC------S--TTCEEECHHHHHHHT
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec------C--CceEEECchHHHHHH
Confidence 346688889775 699999999999 99 999999999999999999973 1 459999999984444
Q ss_pred C
Q 044458 116 N 116 (241)
Q Consensus 116 ~ 116 (241)
.
T Consensus 79 ~ 79 (111)
T 3b73_A 79 G 79 (111)
T ss_dssp T
T ss_pred H
Confidence 3
No 178
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=96.56 E-value=0.001 Score=54.48 Aligned_cols=40 Identities=23% Similarity=0.183 Sum_probs=35.1
Q ss_pred CCeEEEecCCchHHHHHHHHHCC-CCcEEEccc-hHHHhcCC
Q 044458 199 LQSVVDVGGGIGASLDMIISKYP-SIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 199 ~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 238 (241)
..+|||||||.|..+..+++..| +.+++.+|. |..++.|+
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~ 114 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAK 114 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 57999999999999999999998 789999999 77776654
No 179
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=96.56 E-value=0.00084 Score=56.54 Aligned_cols=43 Identities=16% Similarity=0.002 Sum_probs=38.1
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
+....+|||+|||+|.++..+++..+..+++..|+ |..++.|+
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~ 160 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLC 160 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHH
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 45668999999999999999999999889999999 88877654
No 180
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=96.54 E-value=0.001 Score=55.93 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=37.5
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.+++.++ .....+|||||||.|.++..+++. +.+++..|. |..++.++
T Consensus 111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~ 159 (286)
T 3m70_A 111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLN 159 (286)
T ss_dssp HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHH
Confidence 4444444 345789999999999999999998 568999999 77776543
No 181
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=96.54 E-value=0.0016 Score=56.67 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=36.8
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~ 238 (241)
.+.+... .....+|||||||+|.++..++++ +..+++.+|..+.++.|+
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~ 103 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAM 103 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHH
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHH
Confidence 3444444 455689999999999999999987 556899999965666543
No 182
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=96.53 E-value=0.002 Score=51.32 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=35.4
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccch
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLP 231 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP 231 (241)
...+.+.|..+....+|||+|||+|.++..+++. ..+++.+|+-
T Consensus 13 L~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~ 56 (191)
T 3dou_A 13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQ 56 (191)
T ss_dssp HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESS
T ss_pred HHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecc
Confidence 3456666763566789999999999999999988 6778888884
No 183
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=96.53 E-value=0.00097 Score=52.89 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=32.4
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 199 LQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 199 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+|||||||.|.++..+++. +.+++.+|+ |..++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~ 80 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELAR 80 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHH
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHH
Confidence 579999999999999999998 568899999 77776554
No 184
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=96.53 E-value=0.0025 Score=52.07 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=38.9
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.++...+ .....+|||||||+|.++..+++. ..+++..|. |..++.|+
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~ 130 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQ 130 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHH
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHH
Confidence 4555555 666789999999999999999999 778999998 67666553
No 185
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=96.53 E-value=0.0013 Score=51.77 Aligned_cols=40 Identities=15% Similarity=0.013 Sum_probs=33.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||+|||+|.++..+++. +..+++.+|+ |..++.++
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~ 84 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIA 84 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHH
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHH
Confidence 4579999999999999988774 5667999999 78877654
No 186
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=96.51 E-value=0.00089 Score=55.89 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=34.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||||||.|..+..+++. +.+++.+|+ |..|+.|+
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~ 107 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFF 107 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHH
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHH
Confidence 34579999999999999999987 668999999 78887663
No 187
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=96.51 E-value=0.0011 Score=53.77 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=33.2
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHC-CCCcEEEccc-hHHHh
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKY-PSIKGINFDL-PHVIQ 235 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~ 235 (241)
+....+|||+|||+|.++..+++.+ |+.+++.+|. |..++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~ 112 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLR 112 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHH
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHH
Confidence 5566899999999999999999985 6788999999 54443
No 188
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=96.49 E-value=0.0011 Score=53.88 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=33.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||||||+|.++..+++. ..+++.+|+ |..++.++
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~ 87 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLAR 87 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHH
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHH
Confidence 34589999999999999999998 568999999 77776654
No 189
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=96.49 E-value=0.0011 Score=53.82 Aligned_cols=40 Identities=20% Similarity=0.398 Sum_probs=34.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||||||+|.++..+++.++ +++.+|+ |..++.++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~ 79 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHAR 79 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHH
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHH
Confidence 4568999999999999999999987 7888999 77776654
No 190
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=96.48 E-value=0.00081 Score=62.65 Aligned_cols=39 Identities=21% Similarity=0.157 Sum_probs=33.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||.|.++..+++. +.+++.+|+ +..|+.|+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~ 105 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCR 105 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHH
Confidence 4579999999999999999997 678999999 77787765
No 191
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=96.48 E-value=0.0017 Score=55.16 Aligned_cols=49 Identities=18% Similarity=0.398 Sum_probs=38.6
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 237 (241)
...+++..+ .....+|||||||.|.++..+++... +++.+|+ |..++.+
T Consensus 17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a 66 (285)
T 1zq9_A 17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAEL 66 (285)
T ss_dssp HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHH
Confidence 345666666 66778999999999999999999854 7888888 6666544
No 192
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=96.48 E-value=0.0009 Score=54.77 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=34.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||.|.++..+++.+ ..+++.+|+ |..++.++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~ 119 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAK 119 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHH
Confidence 46899999999999999999987 568899998 77776654
No 193
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=96.43 E-value=0.0012 Score=52.34 Aligned_cols=42 Identities=29% Similarity=0.260 Sum_probs=34.6
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.....+|||||||+|.++..+++. +..+++.+|+ |..++.++
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~ 91 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAK 91 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHH
Confidence 344689999999999999999987 5557999999 77777654
No 194
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=96.40 E-value=0.0011 Score=53.86 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=31.5
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 200 QSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 200 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.+|||||||.|.++..+++ +..+++.+|+ |..++.++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~ 105 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKAN 105 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHH
T ss_pred CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHH
Confidence 5999999999999999976 6778999999 77776653
No 195
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=96.40 E-value=0.0025 Score=53.23 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
...+++..+ .....+|||||||+|.++. + ++.++.+++.+|+ |..++.+++
T Consensus 10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l-~~~~~~~v~avEid~~~~~~a~~ 61 (252)
T 1qyr_A 10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE-P-VGERLDQLTVIELDRDLAARLQT 61 (252)
T ss_dssp HHHHHHHHC-CCTTCCEEEECCTTTTTHH-H-HHTTCSCEEEECCCHHHHHHHHT
T ss_pred HHHHHHhcC-CCCcCEEEEECCCCcHHHH-h-hhCCCCeEEEEECCHHHHHHHHH
Confidence 345566665 6666899999999999999 5 4555545899999 777776543
No 196
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=96.39 E-value=0.0015 Score=52.92 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=36.0
Q ss_pred CCCCCeEEEecCC-chHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGG-IGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG-~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.....+||||||| +|.++..+++.+ ..+++.+|+ |..++.|+
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~ 96 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYAR 96 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHH
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHH
Confidence 4556899999999 999999999987 788999999 77777654
No 197
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=96.37 E-value=0.0018 Score=52.56 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=32.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||.|.++..+++. ..+++..|+ |..++.++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~ 76 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAE 76 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHH
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHH
Confidence 4589999999999999999998 457899999 77776553
No 198
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=96.36 E-value=0.0014 Score=54.86 Aligned_cols=49 Identities=14% Similarity=0.267 Sum_probs=38.7
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 237 (241)
...+++..+ .....+|||||||+|.++..++++. .+++.+|+ |..++.+
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~ 67 (255)
T 3tqs_A 18 LQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFL 67 (255)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHH
Confidence 345666666 6667899999999999999999985 57888898 6666654
No 199
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=96.36 E-value=0.0014 Score=52.44 Aligned_cols=39 Identities=18% Similarity=0.059 Sum_probs=32.2
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 199 LQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 199 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+|||+|||+|.++..+++... .+++.+|+ |..++.|+
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~ 93 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLK 93 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHH
T ss_pred CCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHH
Confidence 47999999999999999887753 57899999 77777654
No 200
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=96.36 E-value=0.002 Score=54.41 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=36.0
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 237 (241)
..+++..+ .... +|||||||.|.++..+++.. .+++.+|+ |..++.+
T Consensus 37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l 84 (271)
T 3fut_A 37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVL 84 (271)
T ss_dssp HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHH
T ss_pred HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHH
Confidence 45566666 5556 99999999999999999985 56788888 5555543
No 201
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=96.32 E-value=0.0028 Score=54.23 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=37.9
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 237 (241)
...+++..+ .....+|||||||+|.++..+++. ..+++.+|+ |..++.+
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a 88 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYA 88 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHH
Confidence 345666666 666789999999999999999998 467888888 5555543
No 202
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=96.31 E-value=0.0018 Score=52.29 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=35.6
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHC-CCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKY-PSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~ 238 (241)
.....+|||||||+|.++..+++.. |+.+++.+|+ |..++.++
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~ 119 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSV 119 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Confidence 3456899999999999999999985 7789999999 77766543
No 203
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=96.31 E-value=0.0013 Score=52.64 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=33.6
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.....+|||||||+|.++..+++.. .+++.+|+ |..++.++
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~ 90 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRAC 90 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHH
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHH
Confidence 4456899999999999999999986 47889999 77776553
No 204
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=96.28 E-value=0.0016 Score=52.08 Aligned_cols=39 Identities=21% Similarity=0.133 Sum_probs=32.3
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 199 LQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 199 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+|||+|||+|.++..++++.. .+++.+|+ |..++.|+
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~ 94 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLI 94 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHH
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHH
Confidence 47999999999999999888754 37899999 77777654
No 205
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=96.27 E-value=0.0018 Score=57.11 Aligned_cols=43 Identities=21% Similarity=0.002 Sum_probs=37.8
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
|....+|||+|||+|.+++.+++..+..+++.+|+ |.+++.|+
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~ 258 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAE 258 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHH
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Confidence 56678999999999999999999998888999999 77777664
No 206
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.26 E-value=0.002 Score=54.48 Aligned_cols=58 Identities=12% Similarity=0.241 Sum_probs=47.7
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVC 110 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s 110 (241)
-+.|+++|...+ ++.|+.|||+++|+ +...+.|+|+.|...|++.++ . +++|.+++..
T Consensus 32 al~IL~~l~~~~--~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~----~----~~~Y~LG~~~ 89 (275)
T 3mq0_A 32 AVRILDLVAGSP--RDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS----A----DGTLRIGPHS 89 (275)
T ss_dssp HHHHHHHHHHCS--SCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC----T----TSEEEECTHH
T ss_pred HHHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC----C----CCcEEehHHH
Confidence 356899998864 58999999999999 899999999999999999974 1 4789998854
No 207
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=96.26 E-value=0.0018 Score=52.83 Aligned_cols=39 Identities=26% Similarity=0.231 Sum_probs=33.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||+|.++..+++.. .+++.+|+ |..++.++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~ 117 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALAR 117 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHH
Confidence 36899999999999999999974 78899999 77776654
No 208
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=96.24 E-value=0.0017 Score=54.86 Aligned_cols=41 Identities=24% Similarity=0.096 Sum_probs=35.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||+|||+|.++..+++..+. +++..|+ |..++.|+
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~ 165 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLV 165 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHH
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHH
Confidence 44689999999999999999999887 8999999 77777654
No 209
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=96.24 E-value=0.0022 Score=51.00 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=33.2
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||+|||+|.++..+++..+ .+++.+|+ |..++.++
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~ 89 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLI 89 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHH
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHH
Confidence 3457999999999999999998743 37899999 77776654
No 210
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=96.21 E-value=0.0017 Score=51.32 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=30.9
Q ss_pred eEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 201 SVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 201 ~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
+|||||||.|.++..+++. +.+++.+|. |..++.++
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~ 68 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAK 68 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHH
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHH
Confidence 9999999999999999987 568999999 67766553
No 211
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=96.18 E-value=0.0016 Score=57.23 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=36.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPAY 240 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~ 240 (241)
..++|||||||.|.++.++++..| .++++.|+ |.|++.|++|
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~ 230 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKY 230 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHH
Confidence 569999999999999999998765 78999999 8999887643
No 212
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=96.17 E-value=0.003 Score=53.32 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=32.9
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc--hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL--PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl--P~vi~~a~ 238 (241)
....+|||||||+|.++..+++.. ..+++..|+ |.+++.++
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~ 120 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLE 120 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHH
Confidence 345799999999999999888763 348999999 67777654
No 213
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=96.15 E-value=0.0021 Score=54.99 Aligned_cols=50 Identities=20% Similarity=0.354 Sum_probs=38.9
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+++..+ .....+|||||||.|.++..+++. ..+++.+|+ |..++.++
T Consensus 31 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~ 81 (299)
T 2h1r_A 31 LDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVK 81 (299)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHH
Confidence 345556666 666789999999999999999987 457899999 66666543
No 214
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=96.15 E-value=0.0043 Score=54.94 Aligned_cols=49 Identities=8% Similarity=0.060 Sum_probs=37.6
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHC-CCCcEEEccc-hHHHhcC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKY-PSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a 237 (241)
.+++.++ .....+|+|+|||+|.++..+++++ +..+++.+|+ |.+++.|
T Consensus 30 ~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a 80 (421)
T 2ih2_A 30 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP 80 (421)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC
T ss_pred HHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC
Confidence 3444444 3345699999999999999999988 7788999998 6665544
No 215
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=96.14 E-value=0.0028 Score=55.23 Aligned_cols=48 Identities=23% Similarity=0.117 Sum_probs=36.0
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDA 237 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a 237 (241)
.+.+.+. .....+|||||||+|.++..++++ +..+++.+|..+.++.|
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a 88 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHA 88 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHH
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHH
Confidence 4455554 445689999999999999998885 66789999986555443
No 216
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=96.10 E-value=0.0022 Score=55.95 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=33.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~ 238 (241)
...+|||||||+|.++..++++ +..+++.+|+.+.++.|+
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~ 105 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAV 105 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHH
T ss_pred CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHH
Confidence 3589999999999999999998 667899999976666543
No 217
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=96.10 E-value=0.0023 Score=52.96 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=32.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||+|.++..+++. ..+++.+|+ |..++.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~ 93 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAR 93 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 4689999999999999999987 568899999 77776553
No 218
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=96.09 E-value=0.0089 Score=49.10 Aligned_cols=46 Identities=17% Similarity=0.372 Sum_probs=33.7
Q ss_pred HHHHhcCCCC-CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHh
Q 044458 188 KFLENYKGFE-GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQ 235 (241)
Q Consensus 188 ~~~~~~~~~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~ 235 (241)
..++.++ .. ...+|||||||+|.++..+++. ...+++.+|+ |..++
T Consensus 27 ~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~ 74 (232)
T 3opn_A 27 KALKEFH-LEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLA 74 (232)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCC
T ss_pred HHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHH
Confidence 4445554 33 3579999999999999999988 3348899998 44444
No 219
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=96.09 E-value=0.0026 Score=51.52 Aligned_cols=43 Identities=12% Similarity=0.225 Sum_probs=34.8
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCC------CCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYP------SIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P------~l~~~v~Dl-P~vi~~a~ 238 (241)
.....+|||||||+|.++..+++..+ ..+++.+|+ |..++.++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~ 131 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSK 131 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHH
Confidence 44567999999999999999999766 368899998 67666553
No 220
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=96.09 E-value=0.0038 Score=53.70 Aligned_cols=64 Identities=11% Similarity=0.056 Sum_probs=44.5
Q ss_pred HHHHHHHhcchhhHHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCC-CcEEEccc-hHHHhcC
Q 044458 173 IFNNGMFSHSTITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPS-IKGINFDL-PHVIQDA 237 (241)
Q Consensus 173 ~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~a 237 (241)
.|....-.........++..++ .....+|||+|||+|..+..+++..++ .+++.+|+ |..++.+
T Consensus 94 ~~~~G~~~~qd~~s~l~~~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a 159 (315)
T 1ixk_A 94 EFLTGLIYIQEASSMYPPVALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRET 159 (315)
T ss_dssp HHHTTSEEECCHHHHHHHHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHH
T ss_pred hHhcceEEEeCHHHHHHHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence 4444433333333333344555 666789999999999999999999764 78999999 6666544
No 221
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=96.07 E-value=0.004 Score=52.14 Aligned_cols=41 Identities=27% Similarity=0.212 Sum_probs=33.2
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||||||.|.++..+++. +..+++.+|+ |..++.++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~ 104 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDAR 104 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHH
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHH
Confidence 45689999999999999998776 5668999999 67766543
No 222
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=96.06 E-value=0.0049 Score=42.93 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=39.4
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 42 LLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 42 lfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
|.++|.+. |.+++.|||+.+++ ++..++|.|+.|...|++.+.
T Consensus 7 Il~~L~~~---g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQ---GRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHS---CSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 67788775 69999999999999 999999999999999999875
No 223
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.02 E-value=0.0061 Score=43.23 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=47.5
Q ss_pred HHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCc
Q 044458 33 VLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAP 108 (241)
Q Consensus 33 ~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 108 (241)
+|.--.++.|+..|.. ++.|+.|||+.+|+ ++..+.+.|+.|...|++... .+|. ...|++|+
T Consensus 19 ~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~----~~g~-~~~y~l~~ 81 (102)
T 3pqk_A 19 TLSHPVRLMLVCTLVE----GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETR----RNIK-QIFYRLTE 81 (102)
T ss_dssp HHCSHHHHHHHHHHHT----CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEE----CSSS-CCEEEECS
T ss_pred HcCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE----EeCC-EEEEEECc
Confidence 3344455667777765 68999999999999 999999999999999999864 2221 24566664
No 224
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=96.02 E-value=0.011 Score=43.84 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=41.7
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCc
Q 044458 42 LLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAP 108 (241)
Q Consensus 42 lfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 108 (241)
+...|....++++.|..|||+.+++ ++..++++|+.|...|++... .|. .+.|.++.
T Consensus 14 iL~~la~~~~~~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~-----~g~-~ggy~L~~ 70 (129)
T 2y75_A 14 IMIELAKKHGEGPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSI-----RGA-YGGYVLGS 70 (129)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC----------CCEEESS
T ss_pred HHHHHHhCCCCCcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEec-----CCC-CCceEeCC
Confidence 3444544322368999999999999 999999999999999999864 121 36677664
No 225
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.99 E-value=0.0052 Score=41.89 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=39.3
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 42 LLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 42 lfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
|.+.|.+. +.+++.|||+.+++ ++..++|.|+.|...|++.+.
T Consensus 7 Il~~L~~~---g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS---CSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 67788775 68999999999999 999999999999999999875
No 226
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=95.88 E-value=0.0027 Score=61.47 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=36.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHC-CCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKY-PSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||+|.++..+++.. |..+++.+|+ |..++.|+
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AR 763 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAA 763 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHH
Confidence 46899999999999999999998 5678999999 77777664
No 227
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=95.88 E-value=0.0035 Score=52.68 Aligned_cols=46 Identities=4% Similarity=-0.039 Sum_probs=37.2
Q ss_pred HhcCCCCCCCeEEEecCCchHHHHHHHHHCCC-CcEEEccc-hHHHhcC
Q 044458 191 ENYKGFEGLQSVVDVGGGIGASLDMIISKYPS-IKGINFDL-PHVIQDA 237 (241)
Q Consensus 191 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~a 237 (241)
..++ .....+|||+|||+|..+..+++..++ .+++..|+ |..++.+
T Consensus 77 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~ 124 (274)
T 3ajd_A 77 IVLN-PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKAL 124 (274)
T ss_dssp HHHC-CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHH
T ss_pred HHhC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHH
Confidence 3344 555689999999999999999999887 78999999 5656543
No 228
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=95.88 E-value=0.0024 Score=55.19 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=31.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDA 237 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a 237 (241)
...+|||||||+|.++..++++ +..+++..|..+.++.|
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a 76 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMA 76 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHH
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHH
Confidence 3579999999999999998886 55688999986566554
No 229
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=95.85 E-value=0.0061 Score=43.87 Aligned_cols=47 Identities=17% Similarity=0.322 Sum_probs=40.4
Q ss_pred HHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 37 AIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 37 a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
-.++.|+..|.. ++.|..|||+.+|+ ++..+.+.|+.|...|++...
T Consensus 21 ~~r~~IL~~L~~----~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~ 67 (114)
T 2oqg_A 21 ETRWEILTELGR----ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESV 67 (114)
T ss_dssp HHHHHHHHHHHH----SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEE
Confidence 345667777844 58999999999999 999999999999999999864
No 230
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=95.82 E-value=0.0039 Score=43.86 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=48.7
Q ss_pred HHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCc
Q 044458 32 MVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAP 108 (241)
Q Consensus 32 ~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 108 (241)
.+|.--.++.|+..|.+ ++.|..|||+.+|+ +...+.+.|+.|...|++... .+|. ...|++++
T Consensus 18 ~~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~----~~g~-~~~y~l~~ 81 (98)
T 3jth_A 18 KAMANERRLQILCMLHN----QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTR----KEAQ-TVYYTLKS 81 (98)
T ss_dssp HHHCSHHHHHHHHHTTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----CCTT-CCEEEECC
T ss_pred HHcCCHHHHHHHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE----EeCC-EEEEEECH
Confidence 34444456677888876 58999999999999 999999999999999999864 2221 24566654
No 231
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=95.80 E-value=0.0058 Score=50.51 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=48.6
Q ss_pred cChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 40 LDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 40 lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
+.|++.|...+ ++.|..|||+.+|+ +...+.|+|+.|...|++.+.. . .++|++++...
T Consensus 9 l~iL~~l~~~~--~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~---~----~~~Y~lg~~~~ 67 (241)
T 2xrn_A 9 ASIMRALGSHP--HGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALG---P----AGGFRLGPALG 67 (241)
T ss_dssp HHHHHHHHTCT--TCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECG---G----GCEEEECSHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC---C----CCeEEECHHHH
Confidence 45778887643 47999999999999 9999999999999999999751 1 47899987544
No 232
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=95.79 E-value=0.0038 Score=51.57 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=35.5
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHC-CCCcEEEccc-hHHHhc
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKY-PSIKGINFDL-PHVIQD 236 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~ 236 (241)
++...+|||||||+|.++..+++.- |+=+++.+|. |+.++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~ 117 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRD 117 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHH
Confidence 6677999999999999999999974 8889999999 666654
No 233
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=95.75 E-value=0.0032 Score=53.93 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=31.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
...+|||||||.|..+..+++. ...+++.+|+ +..++.|++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~ 89 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNE 89 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHH
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHH
Confidence 3579999999999877766654 3457899999 788887653
No 234
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=95.74 E-value=0.02 Score=42.89 Aligned_cols=79 Identities=10% Similarity=0.073 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccC
Q 044458 17 ANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQL-PTKNSDAHILLDRILRLLASYSVLNCSLHTL 95 (241)
Q Consensus 17 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~-g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~ 95 (241)
+...+++++.+-|....|.. |.. |+.+..||++.+ |+ ++..|.+.|+.|...|++.+... +
T Consensus 15 pi~~~l~~lg~kW~l~IL~~---------L~~----g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~-~ 76 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFYH---------MID----GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVY-H 76 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHHH---------HTT----SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEE-C
T ss_pred cHHHHHHHHcCcCHHHHHHH---------Hhc----CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEec-C
Confidence 46667777777887766654 323 689999999999 99 99999999999999999987521 1
Q ss_pred CCCccccceecCccccccc
Q 044458 96 PDGGVERLYGLAPVCKFLT 114 (241)
Q Consensus 96 ~~g~~~~~y~~t~~s~~l~ 114 (241)
.+. ..-.|++|+.++.|.
T Consensus 77 ~d~-r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 77 QVP-PKVEYSLTEFGRTLE 94 (131)
T ss_dssp SSS-CEEEEEECTTGGGGH
T ss_pred CCC-CeEEEEECHhHHHHH
Confidence 110 023688888877544
No 235
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=95.73 E-value=0.0083 Score=49.75 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=48.2
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVC 110 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s 110 (241)
-+.|++.|.+.+ ++.|..|||+.+|+ +...+.|+|+.|...|++.+. . .+.|.+++..
T Consensus 10 ~l~iL~~l~~~~--~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~----~----~~~Y~lg~~~ 67 (249)
T 1mkm_A 10 AFEILDFIVKNP--GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK----K----DKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHHCS--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC----T----TSCEEECTHH
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC----C----CCcEEECHHH
Confidence 345788887643 47999999999999 999999999999999999974 1 5789998743
No 236
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=95.71 E-value=0.003 Score=50.06 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=31.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||||||.|.+...++.. ++.+++..|. |..++.++
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~ 63 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAE 63 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHH
Confidence 34589999999999986555544 6779999999 67766543
No 237
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=95.70 E-value=0.0062 Score=51.59 Aligned_cols=42 Identities=24% Similarity=0.396 Sum_probs=33.3
Q ss_pred CCCeEEEecCCc---hHHHHHHHHHCCCCcEEEccc-hHHHhcCCC
Q 044458 198 GLQSVVDVGGGI---GASLDMIISKYPSIKGINFDL-PHVIQDAPA 239 (241)
Q Consensus 198 ~~~~vvDVGGG~---G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 239 (241)
+..+|||||||. |.....+.+.+|+.+++..|. |.+++.|++
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~ 123 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQG 123 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHH
Confidence 568999999997 344444455789999999999 999988763
No 238
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.65 E-value=0.012 Score=42.16 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=59.9
Q ss_pred cCCCCccccHHHHHHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhc
Q 044458 6 RMTPTQISDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQL-PTKNSDAHILLDRILRLLAS 84 (241)
Q Consensus 6 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~-g~~~~~~~~~l~rlLr~L~~ 84 (241)
.|++......-+...+++++.+.|....|. .|.. ++.+..||++.+ |+ ++..+.+.|+.|..
T Consensus 3 ~~~~~~~~~~c~~~~~l~~l~~~~~~~IL~---------~L~~----~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~ 65 (107)
T 2fsw_A 3 AMERKISDEECPVRKSMQIFAGKWTLLIIF---------QINR----RIIRYGELKRAIPGI----SEKMLIDELKFLCG 65 (107)
T ss_dssp ---CCCCSTTCHHHHHHHHHTSSSHHHHHH---------HHTT----SCEEHHHHHHHSTTC----CHHHHHHHHHHHHH
T ss_pred ccccccCcCCCCHHHHHHHHcCccHHHHHH---------HHHh----CCcCHHHHHHHcccC----CHHHHHHHHHHHHH
Confidence 344433334455667777777777765554 3433 589999999999 59 99999999999999
Q ss_pred CCccccccccCCCCccccceecCcccccc
Q 044458 85 YSVLNCSLHTLPDGGVERLYGLAPVCKFL 113 (241)
Q Consensus 85 ~g~l~~~~~~~~~g~~~~~y~~t~~s~~l 113 (241)
.|++..... +.++ ..-.|.+|+.++.+
T Consensus 66 ~GlV~r~~~-~~d~-r~~~y~LT~~G~~l 92 (107)
T 2fsw_A 66 KGLIKKKQY-PEVP-PRVEYSLTPLGEKV 92 (107)
T ss_dssp TTSEEEEEE-CSSS-CEEEEEECHHHHTT
T ss_pred CCCEEEeec-CCCC-CeeEEEECccHHHH
Confidence 999987521 1111 02468888877643
No 239
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=95.65 E-value=0.005 Score=51.27 Aligned_cols=40 Identities=13% Similarity=-0.005 Sum_probs=33.8
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
+....+|+|||||.|-++..+. |..+.+.+|+ +..++.++
T Consensus 103 ~~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar 143 (253)
T 3frh_A 103 AETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVIT 143 (253)
T ss_dssp SCCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHH
T ss_pred CCCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHH
Confidence 4557999999999999999988 9999999999 67666543
No 240
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.64 E-value=0.0074 Score=41.47 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=46.5
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVC 110 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s 110 (241)
....|.++|... + .|+.|||+++|+ +...+++.|..|...|++.... | .+..|.++..+
T Consensus 18 ~~~~IL~lL~~~---g-~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~-----~-~PP~W~~~~~~ 76 (82)
T 1oyi_A 18 IVCEAIKTIGIE---G-ATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSD-----D-IPPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHSSS---T-EEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECS-----S-SSCEEESCC--
T ss_pred HHHHHHHHHHHc---C-CCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC-----C-CCCcceeccCc
Confidence 455677888763 4 999999999999 9999999999999999998741 2 16777777653
No 241
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=95.63 E-value=0.0075 Score=50.66 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=29.5
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHH
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHV 233 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~v 233 (241)
+....+|||||||+|.++..+++. -+++.+|+-+.
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m 106 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTL 106 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchh
Confidence 556689999999999999999887 67899998444
No 242
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.58 E-value=0.0047 Score=44.53 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=39.3
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++.|+..|.. ++.|..|||+.+|+ ++..+.+.|+.|...|++...
T Consensus 26 ~r~~IL~~L~~----~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 26 RRLQILDLLAQ----GERAVEAIATATGM----NLTTASANLQALKSGGLVEAR 71 (108)
T ss_dssp TTHHHHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 34556667764 58999999999999 999999999999999999864
No 243
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=95.58 E-value=0.0074 Score=51.01 Aligned_cols=35 Identities=23% Similarity=0.120 Sum_probs=29.6
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHH
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHV 233 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~v 233 (241)
+....+|||||||+|.++..+++. -+++.+|+-+.
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m 114 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTL 114 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchh
Confidence 556689999999999999999988 57899998443
No 244
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=95.57 E-value=0.0047 Score=52.81 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=38.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPAY 240 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~ 240 (241)
...++||=||||.|..+.++++..|--++++.|+ |.|++.+++|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~ 126 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQY 126 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHH
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhc
Confidence 4578999999999999999998877788999999 8999887653
No 245
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=95.57 E-value=0.0059 Score=44.65 Aligned_cols=64 Identities=11% Similarity=0.134 Sum_probs=49.7
Q ss_pred HHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCc
Q 044458 32 MVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAP 108 (241)
Q Consensus 32 ~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 108 (241)
.+|.--.++.|+..|.. ++.|..|||+.+|+ +...+.+.|+.|...|++.... +|. ...|++++
T Consensus 13 ~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~----~gr-~~~y~l~~ 76 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR----GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHK----QGR-VRTCAIEK 76 (118)
T ss_dssp HHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEE----ETT-EEEEEECS
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEe----cCC-EEEEEECH
Confidence 44455567778888875 68999999999999 9999999999999999998642 121 34566665
No 246
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=95.53 E-value=0.0066 Score=53.49 Aligned_cols=41 Identities=20% Similarity=0.105 Sum_probs=32.3
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDA 237 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a 237 (241)
.....+|||||||+|.++..++++. ..+++.+|....++.|
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a 101 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHA 101 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHH
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHH
Confidence 4556899999999999999999983 3478888886555443
No 247
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=95.49 E-value=0.0071 Score=42.77 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=42.6
Q ss_pred CCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccccccc
Q 044458 55 MSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLT 114 (241)
Q Consensus 55 ~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~ 114 (241)
++..+||..+++ +++.+++.++.|...|++.+. .+.|.+|+.++.+.
T Consensus 21 ~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~---------~~~~~LT~kG~~~l 67 (95)
T 1r7j_A 21 SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE---------GKQYMLTKKGEELL 67 (95)
T ss_dssp BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECHHHHHHH
T ss_pred CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE---------CCeeEEChhHHHHH
Confidence 899999999999 999999999999999999985 45699999988554
No 248
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=95.48 E-value=0.01 Score=43.68 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=45.5
Q ss_pred HHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 31 PMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 31 ~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
..+|.--.++.|+..|... ++.|..|||+.+|+ +...+.+.|+.|...|++...
T Consensus 36 ~~al~~~~rl~IL~~L~~~---~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD---EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 3445455677889999753 68999999999999 999999999999999999864
No 249
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=95.41 E-value=0.011 Score=52.36 Aligned_cols=52 Identities=17% Similarity=0.063 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCC--------------------------------------CcEEE
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPS--------------------------------------IKGIN 227 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--------------------------------------l~~~v 227 (241)
+..++.... |.....|+|++||+|.++++++..-.+ .+++.
T Consensus 184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 344555555 888899999999999999998876332 57899
Q ss_pred ccc-hHHHhcCC
Q 044458 228 FDL-PHVIQDAP 238 (241)
Q Consensus 228 ~Dl-P~vi~~a~ 238 (241)
+|+ |.+++.|+
T Consensus 263 vDid~~ai~~Ar 274 (385)
T 3ldu_A 263 YDIDEESIDIAR 274 (385)
T ss_dssp EESCHHHHHHHH
T ss_pred EECCHHHHHHHH
Confidence 999 88887764
No 250
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=95.41 E-value=0.016 Score=46.19 Aligned_cols=38 Identities=21% Similarity=0.129 Sum_probs=27.2
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL 230 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 230 (241)
.++..+.......+|||||||+|.++..+. .+++.+|+
T Consensus 57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~ 94 (215)
T 2zfu_A 57 RIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDL 94 (215)
T ss_dssp HHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEES
T ss_pred HHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeC
Confidence 344444324456899999999999998873 56777776
No 251
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=95.39 E-value=0.0048 Score=52.19 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=33.2
Q ss_pred CCeEEEecCCchH----HHHHHHHHCC----CCcEEEccc-hHHHhcCC
Q 044458 199 LQSVVDVGGGIGA----SLDMIISKYP----SIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 199 ~~~vvDVGGG~G~----~~~~l~~~~P----~l~~~v~Dl-P~vi~~a~ 238 (241)
..+|+|+|||+|. +++.+++.+| +.+++..|+ +.+++.|+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar 154 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKAR 154 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHH
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHH
Confidence 4799999999998 6677777766 468999999 88888775
No 252
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=95.39 E-value=0.0068 Score=42.32 Aligned_cols=51 Identities=8% Similarity=0.066 Sum_probs=42.8
Q ss_pred HHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 34 LKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 34 L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+..-.++.|+..|... ++.|..|||+.+|+ ++..+.+.|+.|...|++...
T Consensus 21 l~~~~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~ 71 (99)
T 3cuo_A 21 MSHPKRLLILCMLSGS---PGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQ 71 (99)
T ss_dssp HCSHHHHHHHHHHTTC---CSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred hCChHHHHHHHHHHhC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3334566788888662 58999999999999 999999999999999999874
No 253
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=95.37 E-value=0.022 Score=43.18 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=38.6
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCc
Q 044458 53 AFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAP 108 (241)
Q Consensus 53 ~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 108 (241)
++.|.++||+.+++ ++..++++|..|...|++.-. .|. .|.|.+..
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~-----rG~-~GGy~Lar 72 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSV-----RGA-KGGYQLRV 72 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC-----SSS-SSEEEESS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEec-----CCC-CCCeeecC
Confidence 58999999999999 999999999999999999853 232 36677764
No 254
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.37 E-value=0.0086 Score=40.70 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=38.6
Q ss_pred hHHHHHhc-----CCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 42 LLEVIAKA-----GPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 42 lfd~L~~~-----~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
|++.|.+. | +|.|+.|||+.+|+ ++..+++-|..|...|++...
T Consensus 9 IL~~I~~~i~~~~g--~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 9 IISIVQERQNMDDG--APVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHTT--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhhccC--CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 56666654 4 69999999999999 899999999999999999975
No 255
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=95.34 E-value=0.0049 Score=51.41 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=48.9
Q ss_pred cChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccccccc
Q 044458 40 LDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLT 114 (241)
Q Consensus 40 lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~ 114 (241)
+.|++.|...+ ++.|..|||+.+|+ +...+.|+|+.|...|++.+. ++.|++++....|.
T Consensus 17 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~---------~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQR--PNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS---------GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSC--SSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECGGGHHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC---------CCEEEEcHHHHHHH
Confidence 35667776532 58999999999999 999999999999999999974 57899998654443
No 256
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=95.34 E-value=0.0022 Score=54.04 Aligned_cols=40 Identities=13% Similarity=0.065 Sum_probs=29.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||+|.+ ..++...+..+++.+|+ |..++.|+
T Consensus 71 ~~~~vLDiGcG~G~~-~~l~~~~~~~~v~gvD~s~~~l~~a~ 111 (289)
T 2g72_A 71 SGRTLIDIGSGPTVY-QLLSACSHFEDITMTDFLEVNRQELG 111 (289)
T ss_dssp CCSEEEEETCTTCCG-GGTTGGGGCSEEEEECSCHHHHHHHH
T ss_pred CCCeEEEECCCcChH-HHHhhccCCCeEEEeCCCHHHHHHHH
Confidence 457999999999994 34444455668999999 77776543
No 257
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=95.31 E-value=0.012 Score=42.17 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=51.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccCCC
Q 044458 19 LFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQL-PTKNSDAHILLDRILRLLASYSVLNCSLHTLPD 97 (241)
Q Consensus 19 ~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~-g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~ 97 (241)
..+++++.+.|....|. .|.. ++.+..||++.+ ++ ++..+.+.|+.|...|++.+... +.|
T Consensus 5 ~~~l~~l~~~~~~~IL~---------~L~~----~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~-~~d 66 (107)
T 2hzt_A 5 EATLEVIGGKWKXVILX---------HLTH----GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVY-NQV 66 (107)
T ss_dssp HHHHHHHCSTTHHHHHH---------HHTT----CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEE-CSS
T ss_pred HHHHHHHcCccHHHHHH---------HHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeec-CCC
Confidence 34455555555544443 3433 589999999999 99 99999999999999999987521 111
Q ss_pred CccccceecCcccc
Q 044458 98 GGVERLYGLAPVCK 111 (241)
Q Consensus 98 g~~~~~y~~t~~s~ 111 (241)
+- .-.|.+|+.++
T Consensus 67 ~r-~~~y~LT~~G~ 79 (107)
T 2hzt_A 67 PP-KVEYELSEYGR 79 (107)
T ss_dssp SC-EEEEEECTTGG
T ss_pred CC-eEEEEECccHH
Confidence 10 23577777665
No 258
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=95.27 E-value=0.008 Score=53.98 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=37.9
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.+++..+ .....+|+|+|||+|.++..+++. ..+++..|. |..++.|+
T Consensus 277 ~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~ 325 (433)
T 1uwv_A 277 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQ 325 (433)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHH
T ss_pred HHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHH
Confidence 3344444 555689999999999999999988 678899999 77777654
No 259
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.26 E-value=0.01 Score=42.48 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=39.6
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++.|+..|.. ++.|..|||+.+|+ +...+.+.|+.|...|++...
T Consensus 27 ~r~~IL~~L~~----~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 27 NRIRIMELLSV----SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp HHHHHHHHHHH----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 45566667764 58999999999999 999999999999999999864
No 260
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=95.25 E-value=0.0014 Score=55.26 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=36.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 237 (241)
....+|+|||||.|-++..+...+|..+.+.+|. +..++.+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a 172 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFV 172 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHH
Confidence 3478999999999999999999999999999999 5666554
No 261
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=95.24 E-value=0.013 Score=51.97 Aligned_cols=52 Identities=13% Similarity=-0.018 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCC--------------------------------------CcEEE
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPS--------------------------------------IKGIN 227 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--------------------------------------l~~~v 227 (241)
+..++.... |.....|||.+||+|.++++.+....+ .+++.
T Consensus 190 Aa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 190 AAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 344555555 888899999999999999988876544 56899
Q ss_pred ccc-hHHHhcCC
Q 044458 228 FDL-PHVIQDAP 238 (241)
Q Consensus 228 ~Dl-P~vi~~a~ 238 (241)
+|. |.+++.|+
T Consensus 269 vDid~~al~~Ar 280 (393)
T 3k0b_A 269 GDIDARLIEIAK 280 (393)
T ss_dssp EESCHHHHHHHH
T ss_pred EECCHHHHHHHH
Confidence 999 78877664
No 262
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=95.22 E-value=0.013 Score=49.69 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=42.8
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.+.+++.+. +.....+||+++|.|.++..++++ +.+.+.+|. |.+++.|+
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~ 61 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAK 61 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 467777777 777789999999999999999998 788999999 88887654
No 263
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=95.17 E-value=0.0034 Score=52.58 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=47.6
Q ss_pred cChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccc
Q 044458 40 LDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVC 110 (241)
Q Consensus 40 lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s 110 (241)
+.|+++|...+ ++.|..|||+++|+ +...+.|+|+.|...|++.++. . .++|.+++..
T Consensus 9 l~IL~~l~~~~--~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~~---~----~~~Y~lG~~~ 66 (260)
T 3r4k_A 9 LTLLTYFNHGR--LEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQVE---G----ARSYRLGPQV 66 (260)
T ss_dssp HHHHTTCBTTB--SEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEECS---S----SSEEEECTTH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---C----CCcEEcCHHH
Confidence 45677776532 58999999999999 9999999999999999999851 1 4799998754
No 264
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=95.17 E-value=0.0071 Score=48.04 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=29.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCC-cEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSI-KGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l-~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||+|.++..+ +. +++..|. |..++.++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~ 73 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGR 73 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHH
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHH
Confidence 5689999999999999887 45 7899998 66666543
No 265
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=95.16 E-value=0.0098 Score=43.51 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=42.9
Q ss_pred HHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 32 MVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 32 ~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.+|.--.++.|+..|.. ++.+..|||+.+|+ ++..+.+.|+.|...|++...
T Consensus 16 ~aL~~~~r~~IL~~L~~----~~~~~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~ 67 (118)
T 2jsc_A 16 RALADPTRCRILVALLD----GVCYPGQLAAHLGL----TRSNVSNHLSCLRGCGLVVAT 67 (118)
T ss_dssp HHHSSHHHHHHHHHHHT----TCCSTTTHHHHHSS----CHHHHHHHHHHHTTTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE
Confidence 33444456677777765 57999999999999 999999999999999999864
No 266
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=95.16 E-value=0.0063 Score=48.88 Aligned_cols=33 Identities=21% Similarity=0.165 Sum_probs=26.7
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcC
Q 044458 199 LQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 199 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 237 (241)
..+|||||||.|.++..+++. +.+|. |..++.+
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a 81 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIA 81 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHH
Confidence 689999999999999988765 77787 6665544
No 267
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.11 E-value=0.02 Score=43.39 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=39.9
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++.|+..|...+ ++.|..+||+.+++ +...+.++++.|...|++.+.
T Consensus 49 ~~~iL~~L~~~~--~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 49 KFDAMAQLARNP--DGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp HHHHHHHHHHCT--TCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee
Confidence 445788884322 68999999999999 999999999999999999874
No 268
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.11 E-value=0.017 Score=44.78 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=38.7
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCc
Q 044458 53 AFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAP 108 (241)
Q Consensus 53 ~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 108 (241)
++.|+++||+.+++ ++..++++|..|...|++.-.+ |. .|.|.++.
T Consensus 43 ~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~r-----G~-~GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIR-----GA-HGGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-----ST-TCEEEECS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEec-----CC-CCceEecC
Confidence 68999999999999 9999999999999999998642 32 46677654
No 269
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=95.05 E-value=0.0019 Score=53.18 Aligned_cols=40 Identities=13% Similarity=0.019 Sum_probs=33.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 237 (241)
....+|||||||+|.++..+++..+ .+++..|+ |..++.+
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a 95 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWEL 95 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHH
Confidence 3458999999999999999988876 57899999 6666655
No 270
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=95.03 E-value=0.0068 Score=53.65 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=33.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||+|.++..+++. +.+++.+|. |..++.++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~ 272 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQ 272 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHH
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHH
Confidence 3579999999999999999998 568999998 77776654
No 271
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=95.03 E-value=0.035 Score=47.26 Aligned_cols=46 Identities=15% Similarity=0.277 Sum_probs=34.1
Q ss_pred HHHHHhcCCCC-CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHH
Q 044458 187 KKFLENYKGFE-GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVI 234 (241)
Q Consensus 187 ~~~~~~~~~~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi 234 (241)
..+++.+. .. ...+|||||||+|.++..+++. +.-+++.+|+ |..+
T Consensus 74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL 121 (291)
T 3hp7_A 74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQL 121 (291)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCS
T ss_pred HHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHH
Confidence 34556665 43 4579999999999999988886 5557899998 4433
No 272
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=95.02 E-value=0.015 Score=39.40 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=38.9
Q ss_pred cChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 40 LDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 40 lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
..|++.|... ++.|..|||+.+|+ +...+++.|+.|...|++..
T Consensus 3 ~~Il~~L~~~---~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 3 NEILEFLNRH---NGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHS---CCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 3477788764 58999999999999 99999999999999999985
No 273
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=95.00 E-value=0.01 Score=51.43 Aligned_cols=39 Identities=15% Similarity=0.017 Sum_probs=32.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||+|||+|.++..+++... +++.+|+ |..++.|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~ 192 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAK 192 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHH
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHH
Confidence 346999999999999999999754 8999999 77777654
No 274
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=94.92 E-value=0.015 Score=52.37 Aligned_cols=64 Identities=16% Similarity=0.092 Sum_probs=44.8
Q ss_pred HHHHHHHHhcchhhHHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCC-CcEEEccc-hHHHhc
Q 044458 172 KIFNNGMFSHSTITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPS-IKGINFDL-PHVIQD 236 (241)
Q Consensus 172 ~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~ 236 (241)
..|....-.........++...+ .....+|||+|||+|..+..+++..++ .+++..|+ |..++.
T Consensus 234 ~~~~~G~~~~qd~~s~l~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~ 299 (450)
T 2yxl_A 234 SAFNEGKIIVQEEASAVASIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKR 299 (450)
T ss_dssp HHHHTTSEEECCHHHHHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHH
T ss_pred chhhCceEEecCchhHHHHHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHH
Confidence 34544443333333333444455 566689999999999999999999988 78999998 555544
No 275
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=94.91 E-value=0.0055 Score=51.39 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=47.4
Q ss_pred cChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 40 LDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 40 lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
+.|+++|...+ ++.|..|||+.+|+ +...+.|+|+.|...|++.+. ++.|.+++...
T Consensus 24 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~~---------~~~Y~Lg~~~~ 80 (265)
T 2ia2_A 24 LAVIRCFDHRN--QRRTLSDVARATDL----TRATARRFLLTLVELGYVATD---------GSAFWLTPRVL 80 (265)
T ss_dssp HHHHHTCCSSC--SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEES---------SSEEEECGGGG
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec---------CCEEEEcHHHH
Confidence 45677776432 58999999999999 999999999999999999973 57899987543
No 276
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=94.90 E-value=0.013 Score=42.43 Aligned_cols=74 Identities=12% Similarity=0.134 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCC--HHHHHhhC-CCCCCCCcchHHHHHHHHhcCCcccccccc
Q 044458 18 NLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMS--PKQIASQL-PTKNSDAHILLDRILRLLASYSVLNCSLHT 94 (241)
Q Consensus 18 ~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t--~~eLA~~~-g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~ 94 (241)
...+++++.+.|....|. .|.. |+.+ ..||++.+ |+ ++..+.+.|+.|...|++.+..
T Consensus 17 ~~~~l~~l~~~wrl~IL~---------~L~~----g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~-- 77 (111)
T 3df8_A 17 SESVLHLLGKKYTMLIIS---------VLGN----GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRS-- 77 (111)
T ss_dssp TSSTHHHHHSTTHHHHHH---------HHTS----SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEE--
T ss_pred HHHHHHHHcCccHHHHHH---------HHhc----CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEee--
Confidence 344556666666555544 4443 5777 99999999 99 9999999999999999998752
Q ss_pred CCCCccccceecCccccccc
Q 044458 95 LPDGGVERLYGLAPVCKFLT 114 (241)
Q Consensus 95 ~~~g~~~~~y~~t~~s~~l~ 114 (241)
.. ...|++|+.++.+.
T Consensus 78 -~r---~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 78 -GQ---ITTYALTEKGMNVR 93 (111)
T ss_dssp -SS---SEEEEECHHHHHHH
T ss_pred -cC---cEEEEECccHHHHH
Confidence 11 46788888776433
No 277
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=94.86 E-value=0.011 Score=49.42 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=29.1
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-h
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-P 231 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P 231 (241)
.....+|||+|||.|.++..+++. ..+++.+|+ |
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~ 115 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHP 115 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECCh
Confidence 334579999999999999999996 578999999 5
No 278
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=94.77 E-value=0.083 Score=39.11 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=39.1
Q ss_pred HHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 37 AIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 37 a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
..++.|+..|... ++.|..+||+.+++ ++..+.++++.|...|++.+.
T Consensus 37 ~~~~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 37 PPDVHVLKLIDEQ---RGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp HHHHHHHHHHHHT---TTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHHhC---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeec
Confidence 4566688888875 58999999999999 999999999999999999875
No 279
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=94.73 E-value=0.022 Score=50.38 Aligned_cols=36 Identities=11% Similarity=-0.127 Sum_probs=28.0
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPS 222 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~ 222 (241)
+..++.... |.....|+|.+||+|.++++.+..-.+
T Consensus 183 Aaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~ 218 (384)
T 3ldg_A 183 AAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMN 218 (384)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTT
T ss_pred HHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcC
Confidence 344555555 888899999999999999998875544
No 280
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=94.70 E-value=0.0097 Score=52.61 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=28.5
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhcC
Q 044458 199 LQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQDA 237 (241)
Q Consensus 199 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~a 237 (241)
.++|||||||+|.+++..+++-. -+++.+|..++++.|
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~~~~~a 121 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASAIWQQA 121 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHH
T ss_pred CCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChHHHHHH
Confidence 47999999999999987777643 367888875555444
No 281
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=94.69 E-value=0.012 Score=45.19 Aligned_cols=68 Identities=19% Similarity=0.292 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCc
Q 044458 29 VLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAP 108 (241)
Q Consensus 29 ~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 108 (241)
-...+|.--.++.|+..|.. ++.|+.|||+.+|+ +...+.+-|+.|...|++.... +|- ...|++|+
T Consensus 50 ~~l~aL~~p~R~~IL~~L~~----~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~----~Gr-~~~y~lt~ 116 (151)
T 3f6v_A 50 DQLEVAAEPTRRRLVQLLTS----GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRK----DGR-FRYYRLDP 116 (151)
T ss_dssp CHHHHHTSHHHHHHHHHGGG----CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEE----ETT-EEEEEECH
T ss_pred HHHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEe----cCC-EEEEEECh
Confidence 34567777788889999975 68999999999999 9999999999999999998642 221 24577765
Q ss_pred c
Q 044458 109 V 109 (241)
Q Consensus 109 ~ 109 (241)
.
T Consensus 117 ~ 117 (151)
T 3f6v_A 117 Q 117 (151)
T ss_dssp H
T ss_pred H
Confidence 3
No 282
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=94.60 E-value=0.023 Score=42.43 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=42.2
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccccc
Q 044458 53 AFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFL 113 (241)
Q Consensus 53 ~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l 113 (241)
++.|..+||+.+++ ++..+.++++.|...|++... . ...|.+|+.+..+
T Consensus 21 ~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~----~----~~~~~LT~~g~~~ 69 (142)
T 1on2_A 21 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE----K----YRGLVLTSKGKKI 69 (142)
T ss_dssp SSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE----T----TTEEEECHHHHHH
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe----e----CceEEEchhHHHH
Confidence 58999999999999 999999999999999999874 1 4678888877643
No 283
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=94.60 E-value=0.0091 Score=49.89 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=45.8
Q ss_pred cChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccc
Q 044458 40 LDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVC 110 (241)
Q Consensus 40 lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s 110 (241)
+.|++.|...+ ++.|..|||+.+|+ +...+.|+|+.|...|++.+. . .+.|.+++..
T Consensus 26 l~iL~~l~~~~--~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~----~----~~~Y~lg~~~ 82 (260)
T 2o0y_A 26 IDLLELFDAAH--PTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSR----A----DGSYSLGPEM 82 (260)
T ss_dssp HHHHTTCBTTB--SSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEC----T----TSCEEECHHH
T ss_pred HHHHHHHhhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC----C----CCeEEecHHH
Confidence 34566665422 58999999999999 999999999999999999974 1 3489998753
No 284
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=94.58 E-value=0.0096 Score=53.33 Aligned_cols=48 Identities=10% Similarity=0.174 Sum_probs=37.9
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhc
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQD 236 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~ 236 (241)
.++..++ .....+|||+|||+|..+..+++..|+.+++.+|. |..++.
T Consensus 237 ~~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~ 285 (429)
T 1sqg_A 237 GCMTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSR 285 (429)
T ss_dssp THHHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHH
T ss_pred HHHHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 3344445 55568999999999999999999999988999998 544443
No 285
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=94.58 E-value=0.064 Score=40.60 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=39.9
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++.+.
T Consensus 51 ~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 51 EWRVITILALY---PGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp HHHHHHHHHHS---TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeee
Confidence 44577788764 58999999999999 999999999999999999874
No 286
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=94.53 E-value=0.0098 Score=51.55 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=34.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCC-----CcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPS-----IKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~-----l~~~v~Dl-P~vi~~a~ 238 (241)
...+|+|+|||+|.++..+++..+. .+++.+|+ |..++.|+
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~ 176 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLAL 176 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHH
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence 4579999999999999999998876 67899999 77776553
No 287
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=94.40 E-value=0.027 Score=42.91 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=44.6
Q ss_pred HHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcc
Q 044458 31 PMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPV 109 (241)
Q Consensus 31 ~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 109 (241)
..+|++.+.+... . +++.|+++||+.+++ ++..++++|..|...|++... .| .|.|.+..-
T Consensus 14 ~yAl~~L~~La~~----~---~~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~-----rG--~GGy~L~~~ 74 (149)
T 1ylf_A 14 SIAVHILSILKNN----P---SSLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVN-----RG--PGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHHHHS----C---GGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CCEEESSC
T ss_pred HHHHHHHHHHHhC----C---CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEc-----cC--CCceEeCCC
Confidence 3456665554321 1 158999999999999 999999999999999999853 24 467777653
No 288
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=94.36 E-value=0.0033 Score=52.35 Aligned_cols=40 Identities=10% Similarity=0.010 Sum_probs=28.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||||||+|.++..+++..- -+++..|+ |..++.|+
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~ 95 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELE 95 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHH
Confidence 457999999999988766554422 15889999 67776543
No 289
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=94.34 E-value=0.019 Score=40.21 Aligned_cols=63 Identities=13% Similarity=0.148 Sum_probs=47.3
Q ss_pred hcChHHHHHhcCCCCCCCHHHH----HhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQI----ASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFL 113 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eL----A~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l 113 (241)
++.|+..|... ++.|..|| |+.+++ +...+.++++.|...|++.+.. .+. ...|.+|+.++.+
T Consensus 10 q~~iL~~l~~~---~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~---~~r--~~~~~LT~~G~~~ 76 (99)
T 1tbx_A 10 EAIVLAYLYDN---EGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQ---ERG--EKRLYLTEKGKLF 76 (99)
T ss_dssp HHHHHHHHTTC---TTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEE---ETT--EEEEEECHHHHHH
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEe---cCC--ceEEEECHHHHHH
Confidence 34566667653 58999999 999999 9999999999999999998742 111 3466777766533
No 290
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=94.26 E-value=0.021 Score=50.44 Aligned_cols=40 Identities=13% Similarity=-0.034 Sum_probs=35.8
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 199 LQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 199 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+|||+|||+|..++.++++.+..+++..|+ |..++.++
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~ 88 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMK 88 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence 57999999999999999999999889999999 77777654
No 291
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=94.23 E-value=0.023 Score=43.18 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=43.6
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 42 LLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 42 lfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
|...|... ++.|..+||+.+++ +...+.+.|+.|...|++... . ...+.+|+.+.
T Consensus 45 i~~~l~~~---~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~----~----~~~~~lT~~g~ 99 (155)
T 2h09_A 45 ISDLIREV---GEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMI----P----WRGVFLTAEGE 99 (155)
T ss_dssp HHHHHHHH---SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE----T----TTEEEECHHHH
T ss_pred HHHHHHhC---CCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEe----c----CCceEEChhHH
Confidence 34466553 57999999999999 999999999999999999864 1 34567777665
No 292
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=94.21 E-value=0.021 Score=47.34 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=50.2
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFL 113 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l 113 (241)
.++.|+..|... ++.|..|||+.+|+ +...+.|.|+.|...|++.+.. . ...|.+|+.++.+
T Consensus 153 ~~~~IL~~L~~~---~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~~---r----~~~~~LT~~G~~l 214 (244)
T 2wte_A 153 EEMKLLNVLYET---KGTGITELAKMLDK----SEKTLINKIAELKKFGILTQKG---K----DRKVELNELGLNV 214 (244)
T ss_dssp HHHHHHHHHHHH---TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET---T----TTEEEECHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC---C----ccEEEECHHHHHH
Confidence 344567777654 58999999999999 9999999999999999998741 1 4689999887644
No 293
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.20 E-value=0.021 Score=42.12 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=40.5
Q ss_pred hcChHHHHHhcCCCCC-CCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAF-MSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~-~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+..|+..|...+ ++ +|..|||+.+++ +...+.|.|+.|...|++.+.
T Consensus 28 e~~il~~L~~~~--~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 28 DLNVMKSFLNEP--DRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHST--TCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCC--CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 455777787654 46 999999999999 999999999999999999864
No 294
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=94.16 E-value=0.021 Score=42.04 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=41.0
Q ss_pred HHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 37 AIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 37 a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
-.++.|+..|.+ ++.+..|||+.+|+ +...+.+.|+.|...|++...
T Consensus 46 ~~rl~IL~~L~~----~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~ 92 (122)
T 1r1t_A 46 PNRLRLLSLLAR----SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYR 92 (122)
T ss_dssp HHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 356677888865 58999999999999 999999999999999999864
No 295
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=94.13 E-value=0.019 Score=41.45 Aligned_cols=78 Identities=10% Similarity=0.018 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCcccccccc
Q 044458 16 EANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQL-PTKNSDAHILLDRILRLLASYSVLNCSLHT 94 (241)
Q Consensus 16 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~-g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~ 94 (241)
-+...++++..+.|...+|. .|.. ++.+..|||+.+ ++ ++..+.+.|+.|...|++.....
T Consensus 10 c~~~~~l~~l~~~~~~~IL~---------~L~~----~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~- 71 (112)
T 1z7u_A 10 TSINLALSTINGKWKLSLMD---------ELFQ----GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESF- 71 (112)
T ss_dssp HHHHHHHHTTCSTTHHHHHH---------HHHH----SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEE-
T ss_pred CCHHHHHHHHcCccHHHHHH---------HHHh----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeec-
Confidence 34555566666666555443 4444 479999999999 99 99999999999999999987521
Q ss_pred CCCCccccceecCccccc
Q 044458 95 LPDGGVERLYGLAPVCKF 112 (241)
Q Consensus 95 ~~~g~~~~~y~~t~~s~~ 112 (241)
+.|+ ..-.|.+|+.++.
T Consensus 72 ~~d~-r~~~~~LT~~G~~ 88 (112)
T 1z7u_A 72 NELP-PRVEYTLTPEGYA 88 (112)
T ss_dssp CCSS-CEEEEEECHHHHH
T ss_pred CCCC-CeEEEEECHhHHH
Confidence 1111 0235888877653
No 296
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=94.12 E-value=0.043 Score=40.42 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=50.8
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLT 114 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~ 114 (241)
.++.|+..|... ++.|..+||+.+++ ++..+.+.++.|...|++..... +.|+ ....|.+|+.++.+.
T Consensus 32 ~~~~iL~~l~~~---~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~-~~d~-r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKD---APLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRN-PDNQ-REVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEC-SSST-TCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCC-CCCC-CeeEEEECHHHHHHH
Confidence 345578888765 58999999999999 99999999999999999987521 1111 123577887776544
No 297
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=94.11 E-value=0.03 Score=42.56 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=52.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCC
Q 044458 19 LFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDG 98 (241)
Q Consensus 19 ~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g 98 (241)
...++++.+.|....|.. |.. ++.+..||++.+|+ +...+.+.|+.|...|++.+... +.++
T Consensus 15 ~~~l~~l~~~w~l~IL~~---------L~~----g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~-~~d~ 76 (146)
T 2f2e_A 15 ARPLDVIGDGWSMLIVRD---------AFE----GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPA-ESGS 76 (146)
T ss_dssp TTTHHHHCSSSHHHHHHH---------HHT----TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEEC-SSSS
T ss_pred HHHHHHhCCchHHHHHHH---------HHh----CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEec-CCCC
Confidence 345566666665554443 333 58999999999999 99999999999999999987521 1111
Q ss_pred ccccceecCccccc
Q 044458 99 GVERLYGLAPVCKF 112 (241)
Q Consensus 99 ~~~~~y~~t~~s~~ 112 (241)
.-.|.+|+.++.
T Consensus 77 --~~~y~LT~~G~~ 88 (146)
T 2f2e_A 77 --HQEYRLTDKGRA 88 (146)
T ss_dssp --CEEEEECHHHHT
T ss_pred --eEEEEECchHHH
Confidence 247888877653
No 298
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=94.10 E-value=0.066 Score=41.49 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=38.9
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCc
Q 044458 53 AFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAP 108 (241)
Q Consensus 53 ~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 108 (241)
+++|.++||+.+++ ++..++++|..|...|++.-. .|. .|.|.+..
T Consensus 27 ~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~-----rG~-~GGy~Lar 72 (162)
T 3k69_A 27 SKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGT-----VGK-NGGYQLDL 72 (162)
T ss_dssp SCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEE-----CST-TCEEECCS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee-----cCC-CCCeEecC
Confidence 68999999999999 999999999999999999754 232 46687775
No 299
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=94.10 E-value=0.028 Score=39.10 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=51.7
Q ss_pred HHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 32 MVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 32 ~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
.++..-.++.|+..|... ++.|..|||+.+++ ++..+.+.|+.|...|++...... .++- ...|.+|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~---~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~~-~~~r-~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR---RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVI-ADRP-RTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEEC-SSSC-EEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecC-CCcc-eEEEEECHHHH
Confidence 455556677788888654 58999999999999 999999999999999999853100 1111 24566666543
No 300
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=94.06 E-value=0.016 Score=39.36 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=40.3
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQL-----PTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~-----g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+..|++.|...+ +++.|++||++.+ ++ +..-+.|.|+.|...|++.+.
T Consensus 19 r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 19 RLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEE
Confidence 345888887631 0489999999999 88 999999999999999999875
No 301
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=94.02 E-value=0.12 Score=38.43 Aligned_cols=48 Identities=10% Similarity=0.067 Sum_probs=34.7
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++.++..|...++ ++.|..+||+.+++ ++..+.++++.|...|++.+.
T Consensus 43 q~~vL~~l~~~~~-~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 43 QGRMIGYIYENQE-SGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp HHHHHHHHHHHTT-TCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC
T ss_pred HHHHHHHHHhCCC-CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEee
Confidence 3456777776421 58999999999999 999999999999999999875
No 302
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=94.00 E-value=0.02 Score=50.58 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=36.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCCCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAPAY 240 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~ 240 (241)
..++||=||||.|..+.++++ ||.-++++.|+ |.|++.+++|
T Consensus 205 ~pkrVLIIGgGdG~~~revlk-h~~~~V~~VEIDp~VVe~ar~y 247 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVK-LKPKMVTMVEIDQMVIDGCKKY 247 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHT-TCCSEEEEEESCHHHHHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHh-cCCceeEEEccCHHHHHHHHhh
Confidence 358999999999999999997 56678999999 8999987654
No 303
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=93.92 E-value=0.019 Score=48.58 Aligned_cols=42 Identities=24% Similarity=0.086 Sum_probs=34.7
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
+....+|||+|||+|.+++.+++. ...+++..|+ |.+++.++
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~ 165 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLV 165 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHH
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHH
Confidence 345689999999999999999876 4578999999 88877654
No 304
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=93.91 E-value=0.065 Score=44.04 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=31.9
Q ss_pred CCCCCeEEEecCCchHHHHHHHHH-CCCCcEEEccc-hH
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISK-YPSIKGINFDL-PH 232 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-P~ 232 (241)
+....+|||||||+|.++..+++. -|+-+++.+|+ |.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~ 112 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPR 112 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHH
Confidence 566799999999999999999986 46888999999 53
No 305
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=93.88 E-value=0.033 Score=39.08 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=40.4
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++.|+..|... ++.|..|||+.+++ +...+.+.|+.|...|++...
T Consensus 21 ~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 21 SDVRIYSLLLER---GGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 345567777654 58999999999999 999999999999999999874
No 306
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=93.87 E-value=0.027 Score=51.10 Aligned_cols=47 Identities=6% Similarity=-0.018 Sum_probs=37.4
Q ss_pred HHhcCCCCCCCeEEEecCCchHHHHHHHHHCCC-CcEEEccc-hHHHhcC
Q 044458 190 LENYKGFEGLQSVVDVGGGIGASLDMIISKYPS-IKGINFDL-PHVIQDA 237 (241)
Q Consensus 190 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~a 237 (241)
+...+ .....+|||+|||+|..+..+++..++ .+++..|+ |..++.+
T Consensus 94 a~~L~-~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a 142 (464)
T 3m6w_A 94 GVLLD-PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGL 142 (464)
T ss_dssp HHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHH
T ss_pred HHhcC-cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence 34444 555689999999999999999999876 68899998 6666554
No 307
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=93.69 E-value=0.022 Score=42.60 Aligned_cols=78 Identities=12% Similarity=0.084 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccC
Q 044458 17 ANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQL-PTKNSDAHILLDRILRLLASYSVLNCSLHTL 95 (241)
Q Consensus 17 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~-g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~ 95 (241)
+...+++++.+.|....|.. |.. ++.+..||++.+ |+ ++..+.+.|+.|...|++.+... +
T Consensus 24 ~~~~~l~~l~~~w~l~IL~~---------L~~----g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~-~ 85 (131)
T 1yyv_A 24 PSREVLKHVTSRWGVLILVA---------LRD----GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSY-P 85 (131)
T ss_dssp THHHHHHHHHSHHHHHHHHH---------GGG----CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEE-C
T ss_pred CHHHHHHHHcCCcHHHHHHH---------HHc----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEec-C
Confidence 44555666666666544433 333 589999999999 79 99999999999999999987521 1
Q ss_pred CCCccccceecCcccccc
Q 044458 96 PDGGVERLYGLAPVCKFL 113 (241)
Q Consensus 96 ~~g~~~~~y~~t~~s~~l 113 (241)
.++ ..-.|++|+.++.+
T Consensus 86 ~d~-r~~~y~LT~~G~~l 102 (131)
T 1yyv_A 86 VVP-PHVEYSLTPLGEQV 102 (131)
T ss_dssp SSS-CEEEEEECHHHHHH
T ss_pred CCC-CeEEEEECccHHHH
Confidence 111 02368888877643
No 308
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=93.64 E-value=0.038 Score=41.05 Aligned_cols=46 Identities=13% Similarity=-0.051 Sum_probs=40.2
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 53 AFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 53 ~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
++.|..+||+.+++ +...+.+.++.|...|++... ...|.+|+.+.
T Consensus 30 ~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~---------~~~~~Lt~~g~ 75 (139)
T 2x4h_A 30 EGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK---------EDGVWITNNGT 75 (139)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECHHHH
T ss_pred CCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec---------CCeEEEChhHH
Confidence 68999999999999 999999999999999999974 35677777665
No 309
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=93.62 E-value=0.029 Score=50.47 Aligned_cols=49 Identities=18% Similarity=0.082 Sum_probs=36.7
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHC-------------CCCcEEEccc-hHHHhcC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKY-------------PSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-------------P~l~~~v~Dl-P~vi~~a 237 (241)
.+++..+ .....+|+|.|||+|.++..+.+.. +..+++.+|+ |.+++.|
T Consensus 162 ~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA 224 (445)
T 2okc_A 162 AMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA 224 (445)
T ss_dssp HHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred HHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHH
Confidence 3444444 4445799999999999999988764 5577899999 7776654
No 310
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=93.60 E-value=0.028 Score=49.88 Aligned_cols=38 Identities=16% Similarity=0.001 Sum_probs=32.1
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 199 LQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 199 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+|||+|||+|.+++.+++... +++..|+ |..++.++
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~ 253 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLD 253 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHH
T ss_pred CCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHH
Confidence 68999999999999999999744 4899999 77776654
No 311
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=93.56 E-value=0.038 Score=49.56 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=32.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|+|+|||+|.++..+++. ..+++..|. |..++.|+
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~ 329 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMAR 329 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHH
Confidence 4579999999999999999987 457899999 77777654
No 312
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=93.54 E-value=0.042 Score=47.01 Aligned_cols=32 Identities=19% Similarity=-0.015 Sum_probs=26.9
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL 230 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 230 (241)
+....+|||||||+|.++..++++ -+++.+|+
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~ 111 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKG 111 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEec
Confidence 455689999999999999999988 36777777
No 313
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=93.53 E-value=0.055 Score=45.23 Aligned_cols=43 Identities=21% Similarity=0.259 Sum_probs=33.1
Q ss_pred HHHHhcCCCCCC--CeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHH
Q 044458 188 KFLENYKGFEGL--QSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHV 233 (241)
Q Consensus 188 ~~~~~~~~~~~~--~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~v 233 (241)
.+..... .... .+|||++||.|..+..++++ +.+++.+|. |.+
T Consensus 77 ~l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~ 122 (258)
T 2oyr_A 77 AVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVV 122 (258)
T ss_dssp HHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHH
T ss_pred HHHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHH
Confidence 3444443 4444 79999999999999999998 568999999 543
No 314
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=93.50 E-value=0.039 Score=40.49 Aligned_cols=47 Identities=9% Similarity=0.210 Sum_probs=40.6
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++.|+..|... ++.|..+||+.+++ ++..+.++++.|...|++...
T Consensus 34 ~~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 34 VQFGVIQVLAKS---GKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeec
Confidence 345577778764 58999999999999 999999999999999999864
No 315
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=93.49 E-value=0.033 Score=41.82 Aligned_cols=48 Identities=6% Similarity=0.069 Sum_probs=40.4
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++.|+..|...+ +++|..+||+.+++ ++..+.++++.|...|++.+.
T Consensus 40 ~q~~vL~~l~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~ 87 (150)
T 3fm5_A 40 RSYSVLVLACEQA--EGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRT 87 (150)
T ss_dssp HHHHHHHHHHHST--TCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-
T ss_pred HHHHHHHHHHhCC--CCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEee
Confidence 4455777776543 57899999999999 999999999999999999875
No 316
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=93.45 E-value=0.13 Score=39.42 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=49.0
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFL 113 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l 113 (241)
.++.|+..|... +++|..|||+.+++ +...+.++++.|...|++.+... +.|+ ..-.+.+|+.++.+
T Consensus 46 ~~~~iL~~L~~~---~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~-~~Dr-R~~~~~LT~~G~~~ 112 (168)
T 2nyx_A 46 PQFRTLVILSNH---GPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPH-PTSR-RELLAALTKRGRDV 112 (168)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEC-SSCS-SCEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccC-CCCC-CeeEEEECHHHHHH
Confidence 345577888765 58999999999999 99999999999999999987421 1111 01236677766533
No 317
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.41 E-value=0.061 Score=39.95 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=41.8
Q ss_pred HHhcChHHHHHh-cCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 37 AIELDLLEVIAK-AGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 37 a~~lglfd~L~~-~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
..++.|+..|.. . ++.|..+||+.+++ +...+.++++.|...|++...
T Consensus 35 ~~~~~iL~~l~~~~---~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 35 FSQLVVLGAIDRLG---GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHHHHHHHTT---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeC
Confidence 345667888876 4 58999999999999 999999999999999999875
No 318
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=93.39 E-value=0.046 Score=36.76 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=42.1
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
.+-.|++.|.++| .|++..|||+.+|+ +..-+.+.|..|-..|.+.-
T Consensus 20 ~eekVLe~LkeaG--~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~S 66 (80)
T 2lnb_A 20 LEQRILQVLTEAG--SPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSL 66 (80)
T ss_dssp HHHHHHHHHHHHT--SCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccC
Confidence 3556888999887 79999999999999 99999999999999998875
No 319
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=93.33 E-value=0.029 Score=48.55 Aligned_cols=39 Identities=26% Similarity=0.217 Sum_probs=32.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||+|||+|.++.. ++ ...+++..|+ |..++.++
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~ 233 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLK 233 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHH
Confidence 3568999999999999999 76 5778999999 88877654
No 320
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=93.32 E-value=0.037 Score=49.45 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=32.1
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 199 LQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 199 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+|+|+|||.|..+..+++. ..+++.+|+ |..++.|+
T Consensus 94 g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar 132 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAAR 132 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHH
Confidence 589999999999999999887 458899999 77776654
No 321
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=93.32 E-value=0.04 Score=48.63 Aligned_cols=40 Identities=23% Similarity=0.075 Sum_probs=33.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||+|||+|.++..+++. +..+++..|+ |..++.|+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~ 257 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAK 257 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHH
Confidence 5689999999999999999987 4447899999 77776654
No 322
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=93.20 E-value=0.033 Score=49.12 Aligned_cols=41 Identities=10% Similarity=-0.098 Sum_probs=33.0
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 197 EGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
....+|||+|||+|.++..+++.. .-+++..|+ |.+++.|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~ 252 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSL 252 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHH
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHH
Confidence 445899999999999999999863 237899999 77777654
No 323
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=93.16 E-value=0.13 Score=38.92 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=36.4
Q ss_pred CHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCc
Q 044458 56 SPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAP 108 (241)
Q Consensus 56 t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 108 (241)
|+++||+.+++ ++..|+++|..|...|++.-. .| .|.|.+..
T Consensus 25 s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~-----rG--~GGy~Lar 66 (145)
T 1xd7_A 25 SSEIIADSVNT----NPVVVRRMISLLKKADILTSR-----AG--VPGASLKK 66 (145)
T ss_dssp CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC-----SS--SSSCEESS
T ss_pred CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEee-----cC--CCCceecC
Confidence 99999999999 999999999999999999863 24 46677765
No 324
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=93.11 E-value=0.031 Score=49.16 Aligned_cols=39 Identities=13% Similarity=-0.015 Sum_probs=33.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||+|||+|.++..+++. ..+++..|+ |..++.|+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~ 248 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAE 248 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHH
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHH
Confidence 5679999999999999999998 567899999 77777654
No 325
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=93.07 E-value=0.053 Score=39.92 Aligned_cols=48 Identities=6% Similarity=0.175 Sum_probs=40.3
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++.|+..|...+ +++.|..+||+.+++ +...+.++++.|...|++...
T Consensus 36 ~~~iL~~l~~~~-~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~ 83 (141)
T 3bro_A 36 QMTIIDYLSRNK-NKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRK 83 (141)
T ss_dssp HHHHHHHHHHTT-TSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCC-CCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEee
Confidence 445677777753 127999999999999 999999999999999999875
No 326
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=93.05 E-value=0.041 Score=40.39 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=40.6
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++.|+..|... ++.|..|||+.+++ +...+.++++.|...|++...
T Consensus 30 ~~~~iL~~l~~~---~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 30 AQVACLLRIHRE---PGIKQDELATFFHV----DKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp HHHHHHHHHHHS---TTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence 344567777764 58999999999999 999999999999999999874
No 327
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=93.02 E-value=0.041 Score=40.71 Aligned_cols=47 Identities=9% Similarity=0.185 Sum_probs=40.8
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++.|+..|... ++.|..+||+.+++ +...+.+.++.|...|++...
T Consensus 38 ~~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~ 84 (142)
T 2bv6_A 38 PQFLVLTILWDE---SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRE 84 (142)
T ss_dssp HHHHHHHHHHHS---SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee
Confidence 455577788764 57999999999999 999999999999999999875
No 328
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=92.98 E-value=0.074 Score=39.49 Aligned_cols=66 Identities=17% Similarity=0.158 Sum_probs=48.8
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKF 112 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~ 112 (241)
.++.|+..|... ++.|..+||+.+++ ++..+.++++.|...|++..... +.|+ ..-.+.+|+.++.
T Consensus 32 ~q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~-~~D~-R~~~~~LT~~G~~ 97 (145)
T 3g3z_A 32 NLFAVLYTLATE---GSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEG-EQDR-RKRLLSLTETGKA 97 (145)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCC-SSCG-GGSCEEECHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccC-CCCC-ceeeeeEChhHHH
Confidence 455677888765 47999999999999 99999999999999999987421 1111 1234667766653
No 329
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=92.97 E-value=0.16 Score=38.38 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=41.1
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++...
T Consensus 53 ~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 53 AKMRALAILSAK---DGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEec
Confidence 355578888764 58999999999999 999999999999999999874
No 330
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=92.88 E-value=0.072 Score=46.59 Aligned_cols=37 Identities=8% Similarity=0.122 Sum_probs=30.8
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 200 QSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 200 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
.+|+|+|||+|.++..+++.. -+++..|. |+.++.|+
T Consensus 215 ~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~ 252 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQ 252 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHH
T ss_pred CEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHH
Confidence 689999999999999988854 36899998 77777654
No 331
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=92.86 E-value=0.037 Score=48.85 Aligned_cols=40 Identities=10% Similarity=-0.035 Sum_probs=33.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||+|||+|.++..+++.. ..+++..|+ |..++.|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~ 260 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIAR 260 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHH
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHH
Confidence 45799999999999999999874 457899999 77777654
No 332
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=92.85 E-value=0.067 Score=39.60 Aligned_cols=46 Identities=7% Similarity=0.055 Sum_probs=39.6
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++.|+..|. . ++.|..+||+.+++ +...+.++++.|...|++...
T Consensus 38 ~~~~iL~~l~-~---~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 38 LDFLVLRATS-D---GPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp HHHHHHHHHT-T---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHh-c---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEee
Confidence 3445677776 3 68999999999999 999999999999999999864
No 333
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=92.80 E-value=0.27 Score=36.45 Aligned_cols=46 Identities=4% Similarity=0.071 Sum_probs=40.2
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++...
T Consensus 44 ~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 44 QFVALQWLLEE---GDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp HHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeec
Confidence 34577778765 58999999999999 999999999999999999874
No 334
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=92.69 E-value=0.05 Score=40.33 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=41.0
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++.|+..|... ++.|..|||+.+++ ++..+.++++.|...|++.+.
T Consensus 38 ~~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~ 84 (143)
T 3oop_A 38 EQWSVLEGIEAN---EPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVRE 84 (143)
T ss_dssp HHHHHHHHHHHH---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeecc
Confidence 445577778765 58999999999999 999999999999999999875
No 335
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=92.63 E-value=0.05 Score=40.88 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=48.5
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLT 114 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~ 114 (241)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++..... +.|+ ..-.+.+|+.++.+.
T Consensus 49 ~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~-~~d~-R~~~~~lT~~G~~~~ 115 (153)
T 2pex_A 49 QYLVMLVLWET---DERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRA-ASDE-RQVIIALTETGRALR 115 (153)
T ss_dssp HHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC---------CEEEECHHHHHGG
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCC-cccC-CeeEeeECHHHHHHH
Confidence 44577778764 58999999999999 99999999999999999987421 0111 012567777776444
No 336
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=92.61 E-value=0.081 Score=39.75 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=40.7
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
.+..|++.|... ++.|..|||+++|+ ++..+.+.++.|...|++..
T Consensus 6 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 6 IDLNIIEELKKD---SRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHHC---SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 345678888774 68999999999999 99999999999999999985
No 337
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=92.60 E-value=0.085 Score=50.33 Aligned_cols=33 Identities=12% Similarity=0.006 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHH
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISK 219 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 219 (241)
+..++.... |.....|+|.+||+|.++++.+..
T Consensus 179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~ 211 (703)
T 3v97_A 179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAML 211 (703)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHH
T ss_pred HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHH
Confidence 334555555 887889999999999999987764
No 338
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=92.57 E-value=0.047 Score=40.12 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=39.9
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++...
T Consensus 36 ~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 36 QFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp HHHHHHHHHHH---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence 44567777664 58999999999999 999999999999999999874
No 339
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=92.53 E-value=0.079 Score=39.96 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=41.2
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.+..|...|... ++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 4 ~~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQYN---AKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTTC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEE
Confidence 356688888764 58999999999999 999999999999999999863
No 340
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=92.51 E-value=0.083 Score=39.92 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=40.8
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.+..|...|... ++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 8 ~~~~iL~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAAD---GRATLSELATRAGL----SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 355678888764 68999999999999 999999999999999999753
No 341
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=92.49 E-value=0.066 Score=39.60 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=39.4
Q ss_pred hcChHHHH-HhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVI-AKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L-~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++.|+..| ... ++.|..+||+.+++ +...+.++++.|...|++...
T Consensus 39 ~~~iL~~l~~~~---~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 39 RWLVLLHLARHR---DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp HHHHHHHHHHCS---SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeec
Confidence 34467777 442 68999999999999 999999999999999999875
No 342
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=92.44 E-value=0.07 Score=47.58 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=26.7
Q ss_pred CCCeEEEecCC------chHHHHHHHHH-CCCCcEEEccc
Q 044458 198 GLQSVVDVGGG------IGASLDMIISK-YPSIKGINFDL 230 (241)
Q Consensus 198 ~~~~vvDVGGG------~G~~~~~l~~~-~P~l~~~v~Dl 230 (241)
+..+||||||| +|..+..++++ +|+.+++.+|+
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDi 255 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDI 255 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEES
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEEC
Confidence 45899999999 55666666655 69999999999
No 343
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=92.41 E-value=0.1 Score=44.01 Aligned_cols=44 Identities=25% Similarity=0.157 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL 230 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 230 (241)
...+.+.|. +....+|||+|||.|.++..+++..+-.+++.+|+
T Consensus 79 L~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~Gvdv 122 (282)
T 3gcz_A 79 LRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTL 122 (282)
T ss_dssp HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEe
Confidence 445666665 77778999999999999999888776545554554
No 344
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=92.40 E-value=0.055 Score=40.44 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=40.3
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++...
T Consensus 42 ~~~iL~~l~~~---~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 42 QRAILEGLSLT---PGATAPQLGAALQM----KRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeec
Confidence 44577778764 58999999999999 999999999999999999875
No 345
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=92.38 E-value=0.05 Score=49.26 Aligned_cols=48 Identities=8% Similarity=0.007 Sum_probs=37.1
Q ss_pred HHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCC-CcEEEccc-hHHHhcC
Q 044458 189 FLENYKGFEGLQSVVDVGGGIGASLDMIISKYPS-IKGINFDL-PHVIQDA 237 (241)
Q Consensus 189 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~a 237 (241)
++..++ .....+|||+|||+|..+..+++..++ -+++..|+ +..++.+
T Consensus 97 ~~~~L~-~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~ 146 (456)
T 3m4x_A 97 VGTAAA-AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKIL 146 (456)
T ss_dssp HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHH
T ss_pred HHHHcC-CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHH
Confidence 344445 555689999999999999999998765 67899998 5555543
No 346
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=92.37 E-value=0.051 Score=40.38 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=50.9
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccccccccC
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKN 116 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~ 116 (241)
.++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++..... +.|+ ..-.+.+|+.++.+...
T Consensus 41 ~~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~-~~d~-R~~~~~LT~~G~~~~~~ 110 (147)
T 1z91_A 41 PQYLALLLLWEH---ETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRS-EEDE-RSVLISLTEDGALLKEK 110 (147)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBC-SSCT-TSBEEEECHHHHSGGGG
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccC-CCCC-CeeEEEECHhHHHHHHH
Confidence 455577777764 58999999999999 99999999999999999987421 1111 12346778777654433
No 347
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=92.24 E-value=0.1 Score=38.66 Aligned_cols=46 Identities=13% Similarity=0.319 Sum_probs=39.3
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++.|+..|... + .|..|||+.+++ +...+.++++.|...|++...
T Consensus 39 ~~~~iL~~l~~~---~-~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~ 84 (146)
T 3tgn_A 39 TQEHILMLLSEE---S-LTNSELARRLNV----SQAAVTKAIKSLVKEGMLETS 84 (146)
T ss_dssp HHHHHHHHHTTC---C-CCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHhC---C-CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEec
Confidence 455677777762 4 999999999999 999999999999999999874
No 348
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=92.21 E-value=0.07 Score=38.58 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=40.6
Q ss_pred HHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 37 AIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 37 a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
-.++.|+..|.+ ++.|..+||+.+++ +...+.+.|+.|...|++...
T Consensus 32 ~~~~~il~~L~~----~~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 32 PSRLMILTQLRN----GPLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHHHHHHHHHHH----CCCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHH----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 356667777876 47999999999999 999999999999999999764
No 349
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=92.20 E-value=0.1 Score=38.28 Aligned_cols=47 Identities=9% Similarity=0.097 Sum_probs=41.3
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++...
T Consensus 39 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 39 TQWAALVRLGET---GPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence 355688888765 58999999999999 999999999999999999874
No 350
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=92.12 E-value=0.08 Score=37.77 Aligned_cols=47 Identities=23% Similarity=0.332 Sum_probs=38.6
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.+.|+..+...| .+.|..+||+.+|+ +...+++.|+.|...|++...
T Consensus 20 ~l~Il~~l~~~g--~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKG--TEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHC--SCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 345666664432 37999999999999 999999999999999999763
No 351
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=92.03 E-value=0.11 Score=38.36 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=32.0
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 54 FMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 54 ~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
..|..+||+.+++ ++..+.+.++.|...|++...
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 4799999999999 999999999999999999874
No 352
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=92.01 E-value=0.1 Score=39.98 Aligned_cols=47 Identities=11% Similarity=0.210 Sum_probs=40.9
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.+..|.+.|.+. ++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 11 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 11 TDIKILQVLQEN---GRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEeee
Confidence 345678888774 68999999999999 999999999999999999853
No 353
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=91.97 E-value=0.33 Score=36.70 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=47.4
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
++.|+..|... +++|..|||+.+++ ++..+.++++.|...|++.+... +.|+ ..-.+.+|+.++
T Consensus 48 q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~-~~Dr-R~~~l~LT~~G~ 111 (162)
T 3k0l_A 48 QFTALSVLAAK---PNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPD-PTHG-RRILVTVTPSGL 111 (162)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEEC-CSSS-CCEEEEECHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCC-CCcC-CeeEeEECHhHH
Confidence 44577888775 58999999999999 99999999999999999987521 1111 012456666555
No 354
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=91.85 E-value=0.51 Score=35.03 Aligned_cols=44 Identities=11% Similarity=0.193 Sum_probs=38.8
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
++.++..| .. ++.|..|||+.+++ +...+.++++.|...|++..
T Consensus 40 q~~iL~~l-~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 40 QSHVLNML-SI---EALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHHHHHHH-HH---SCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHH-Hc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 33477888 54 68999999999999 99999999999999999986
No 355
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=91.84 E-value=0.25 Score=33.07 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=32.5
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 53 AFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 53 ~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+..|+.+||+++|+ +...+.|+|.-|...|.+...
T Consensus 28 ~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 28 DYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp CEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecC
Confidence 56999999999999 999999999999999999874
No 356
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=91.81 E-value=0.094 Score=39.69 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=40.9
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.+..|.+.|... ++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 8 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 8 IDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 355678888774 68999999999999 999999999999999999853
No 357
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=91.80 E-value=0.23 Score=37.03 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=40.0
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++...
T Consensus 39 ~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 39 QLFVLASLKKH---GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeec
Confidence 34477778764 58999999999999 999999999999999999875
No 358
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=91.80 E-value=0.12 Score=39.09 Aligned_cols=46 Identities=13% Similarity=0.343 Sum_probs=40.8
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
.+..|+..|... ++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 10 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 10 VDMQLVKILSEN---SRLTYRELADILNT----TRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 455688888774 68999999999999 99999999999999999985
No 359
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=91.72 E-value=0.069 Score=37.55 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=37.5
Q ss_pred HHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 37 AIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 37 a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
-.++.|+..|... ++.|+.|||+.+|+ ++..+.+-|+.|... ++...
T Consensus 27 ~~Rl~IL~~l~~~---~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~ 73 (99)
T 2zkz_A 27 PMRLKIVNELYKH---KALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRN 73 (99)
T ss_dssp HHHHHHHHHHHHH---SCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEE
T ss_pred HHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhhe
Confidence 3455566444333 58999999999999 999999999999999 88754
No 360
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=91.63 E-value=0.22 Score=43.27 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHC-CCCcEEEccc-hHHHhcCC
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKY-PSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~ 238 (241)
...+++.+. ......+||..+|.|..+.+++++. |+.+.+.+|. |++++.|+
T Consensus 46 l~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~ 99 (347)
T 3tka_A 46 LDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 99 (347)
T ss_dssp THHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 456777776 6667899999999999999999985 8899999999 78888764
No 361
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=91.60 E-value=0.12 Score=36.04 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=40.2
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++.|+..|...+. .+++..|||+++++ +...+.++|+.|...|++.+.
T Consensus 22 q~~Vl~~I~~~g~-~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 22 EKLVYQIIEDAGN-KGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHHCT-TCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCC-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 3456777776432 47999999999999 999999999999999999853
No 362
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=91.59 E-value=0.13 Score=40.00 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=41.2
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
.+..|.+.|.+. +..|..|||+++|+ ++..+.+-|+.|...|++..
T Consensus 28 ~d~~IL~~L~~~---~~~s~~eLA~~lgl----S~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 28 IDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 456788888874 68999999999999 99999999999999999975
No 363
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=91.37 E-value=0.11 Score=47.16 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=33.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCC-CCcEEEccc-hHHHhcC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYP-SIKGINFDL-PHVIQDA 237 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a 237 (241)
...+|||+|||+|..+..+++..+ .-+++..|+ +..++.+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~ 158 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVL 158 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence 568999999999999999999876 478899998 5555543
No 364
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=91.36 E-value=0.12 Score=38.38 Aligned_cols=47 Identities=17% Similarity=0.245 Sum_probs=40.9
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|...|++...
T Consensus 41 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 41 TEWRIISVLSSA---SDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHHHHHHS---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence 455677888775 58999999999999 999999999999999999875
No 365
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=91.34 E-value=0.13 Score=39.97 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=40.7
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
.+..|.+.|... ++.|..|||+.+|+ ++..+.+.++.|...|++..
T Consensus 18 ~d~~IL~~L~~~---~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 18 LDRNILRLLKKD---ARLTISELSEQLKK----PESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 455688888774 68999999999999 99999999999999999975
No 366
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=91.30 E-value=0.12 Score=38.49 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=39.4
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
+..|...|... ++.|..|||+.+|+ ++..+.+.|+.|...|++..
T Consensus 6 ~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 6 DKIILEILEKD---ARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEec
Confidence 45577788764 58999999999999 99999999999999999975
No 367
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=91.27 E-value=0.13 Score=39.52 Aligned_cols=46 Identities=9% Similarity=0.186 Sum_probs=41.2
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
.+..|.++|.+. +++|..+||+++|+ ++..+++-++.|...|++..
T Consensus 4 ~d~~il~~L~~~---~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQED---STLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTC---SCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 456788889874 68999999999999 99999999999999999985
No 368
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=91.17 E-value=0.16 Score=40.72 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=50.6
Q ss_pred HHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 32 MVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 32 ~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
.+|..-.++.|+..|.. ++.|..|||+.+|+ +...+.+.|+.|...|++.........|...-.|++|+...
T Consensus 10 kaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK----RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 34444455666677755 68999999999999 99999999999999999987521000111134677777543
No 369
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=91.13 E-value=0.097 Score=33.01 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=41.1
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
|-.|.+.|..+| |-+.++..|+..|+ +.+.+..+||-|...|++.-
T Consensus 12 e~~lL~yIr~sG--GildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNG--GFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTT--SEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcC--CEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence 456889998876 78999999999999 99999999999999999864
No 370
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=91.07 E-value=0.53 Score=35.76 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=45.7
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFL 113 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l 113 (241)
.++.|+..|...++ +++|..+||+.+++ +...+.++++.|...|++.+... +.|+ ..-.+.+|+.++.+
T Consensus 47 ~q~~vL~~l~~~~~-~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~-~~Dr-R~~~l~LT~~G~~~ 115 (168)
T 3u2r_A 47 QQYNTLRLLRSVHP-EGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTRK-PENR-RVVEVALTDAGLKL 115 (168)
T ss_dssp HHHHHHHHHHHHTT-SCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEE-TTEE-EEEEEEECHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecCC-CCCC-CeeEeEECHHHHHH
Confidence 34457777776421 58999999999999 99999999999999999987521 1110 01145666666533
No 371
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=91.06 E-value=0.094 Score=36.44 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=39.2
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccccc
Q 044458 54 FMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFL 113 (241)
Q Consensus 54 ~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l 113 (241)
+.|..+||+.+++ +...+.++++.|...|++... .|+- ...|.+|+.++.+
T Consensus 30 ~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~----~d~R-~~~v~LT~~G~~~ 80 (95)
T 2qvo_A 30 DVYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECE----LEGR-TKIIRLTDKGQKI 80 (95)
T ss_dssp CEEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEE----EETT-EEEEEECHHHHHH
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCC----CCCC-eEEEEEChhHHHH
Confidence 4899999999999 999999999999999999321 1110 1357888776643
No 372
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=91.06 E-value=0.093 Score=37.22 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=39.9
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+..|...|-+. ++.|..||++.++...+++...+.++|+.|...|++.+.
T Consensus 37 e~~VL~~L~~~---~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 37 ELIVMRVIWSL---GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp CSHHHHHHHHH---SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 45577788764 589999999999852122578899999999999999875
No 373
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=91.04 E-value=0.15 Score=40.48 Aligned_cols=52 Identities=12% Similarity=0.145 Sum_probs=44.1
Q ss_pred HHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 32 MVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 32 ~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++....+..|+..|.+ ++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 15 k~l~d~~~~~IL~~L~~----~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 15 KVMLEDTRRKILKLLRN----KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHSHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 34444566778888874 58999999999999 999999999999999999864
No 374
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=91.02 E-value=0.14 Score=38.42 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=45.9
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++.+... +.|+ ..-.+.+|+.++
T Consensus 45 ~~~iL~~l~~~---~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~-~~d~-R~~~~~lT~~G~ 108 (155)
T 3cdh_A 45 EWRVLACLVDN---DAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVAD-AKDK-RRVRVRLTDDGR 108 (155)
T ss_dssp HHHHHHHHSSC---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC--------CCCEEECHHHH
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccC-CCcC-CeeEeEECHHHH
Confidence 44567777654 58999999999999 99999999999999999987421 1111 013466666555
No 375
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=91.02 E-value=0.093 Score=44.45 Aligned_cols=48 Identities=19% Similarity=0.208 Sum_probs=35.8
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..++..+. .....|||++||+|..+.++++. +-+++.+|+ |..++.|+
T Consensus 226 ~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~ 274 (297)
T 2zig_A 226 ERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAK 274 (297)
T ss_dssp HHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 34455443 23479999999999999998886 468999999 66666543
No 376
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=90.96 E-value=0.14 Score=37.52 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=46.6
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
++.++..|...+ +++.|..|||+.+++ +...+.++++.|...|++.+... +.|+ ..-.+.+|+.++
T Consensus 39 q~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~-~~D~-R~~~i~LT~~G~ 104 (127)
T 2frh_A 39 EFAVLTYISENK-EKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRN-EHDE-RTVLILVNAQQR 104 (127)
T ss_dssp HHHHHHHHHHTC-CSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCC-SSSS-CCCEEECCSHHH
T ss_pred HHHHHHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCC-CCCC-CeeEEEECHHHH
Confidence 444667776642 157999999999999 99999999999999999987421 1111 013455666554
No 377
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=90.90 E-value=0.12 Score=39.11 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=40.6
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
.+..|...|.+. ++.|..|||+++|+ ++..+.+.++.|...|++..
T Consensus 9 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 9 LDRGILEALMGN---ARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHHC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcce
Confidence 345678888774 68999999999999 99999999999999999985
No 378
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=90.87 E-value=0.12 Score=44.18 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=35.3
Q ss_pred hcCCCCCCCeEEEecCCchHHHHHHHHHC-CCCcEEEccc-hHHHhcC
Q 044458 192 NYKGFEGLQSVVDVGGGIGASLDMIISKY-PSIKGINFDL-PHVIQDA 237 (241)
Q Consensus 192 ~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a 237 (241)
.++ .....+|||+|+|.|..+..+++.. +.-+++..|+ +..++.+
T Consensus 97 ~l~-~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~ 143 (309)
T 2b9e_A 97 LLD-PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASM 143 (309)
T ss_dssp HHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred HhC-CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHH
Confidence 344 4556899999999999999999975 5678999998 6655543
No 379
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=90.82 E-value=0.12 Score=38.01 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=41.4
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++.++..|...++ ++.|..+||+.+++ ++..+.++++.|...|++...
T Consensus 32 ~~~~vL~~l~~~~~-~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 32 EQGHTLGYLYAHQQ-DGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp HHHHHHHHHHHSTT-TCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCC-CCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeec
Confidence 34557777776531 48999999999999 999999999999999999875
No 380
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=90.80 E-value=0.36 Score=36.29 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=39.2
Q ss_pred cChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 40 LDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 40 lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+.|+..|... ++.|..|||+.+++ ++..+.++++.|...|++.+.
T Consensus 53 ~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~ 97 (159)
T 3s2w_A 53 FPFLMRLYRE---DGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQ 97 (159)
T ss_dssp HHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 3466777664 58999999999999 999999999999999999875
No 381
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=90.76 E-value=0.24 Score=37.42 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=40.5
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++.|+..|... ++.|..|||+.+++ +...+.++++.|...|++.+.
T Consensus 55 q~~vL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~ 100 (161)
T 3e6m_A 55 KLRLLSSLSAY---GELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARS 100 (161)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence 44577788765 58999999999999 999999999999999999875
No 382
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=90.64 E-value=0.18 Score=37.83 Aligned_cols=48 Identities=19% Similarity=0.104 Sum_probs=41.8
Q ss_pred HHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 37 AIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 37 a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
..++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++...
T Consensus 44 ~~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 44 TTELYAFLYVALF---GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence 3456678888775 58999999999999 999999999999999999874
No 383
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=90.64 E-value=0.17 Score=47.64 Aligned_cols=64 Identities=14% Similarity=0.226 Sum_probs=38.6
Q ss_pred cccccccCchHHHHHHHHHHhcchhhHHHHHHhcC---CCCCCCeEEEecCCchHHHHHHHHHC----CCCcEEEccc
Q 044458 160 AFDYHGKDLRLNKIFNNGMFSHSTITMKKFLENYK---GFEGLQSVVDVGGGIGASLDMIISKY----PSIKGINFDL 230 (241)
Q Consensus 160 ~~e~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~---~~~~~~~vvDVGGG~G~~~~~l~~~~----P~l~~~v~Dl 230 (241)
.||.+++|+-+.+.|.+|+.. .+.+..+ .-.+...|+|||+|+|-+....+++- -++++...+-
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEk 393 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEK 393 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred hhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 366777888877788887732 2222211 02234789999999999954433332 2235565655
No 384
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=90.62 E-value=0.2 Score=42.12 Aligned_cols=37 Identities=19% Similarity=0.098 Sum_probs=27.4
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCc
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIK 224 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~ 224 (241)
..+.+.+- +....+|||+|||.|.++..+++..+--+
T Consensus 64 ~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~ 100 (277)
T 3evf_A 64 RWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSG 100 (277)
T ss_dssp HHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEE
T ss_pred HHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCc
Confidence 34444543 66668999999999999998888765433
No 385
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=90.54 E-value=0.15 Score=35.60 Aligned_cols=35 Identities=9% Similarity=0.182 Sum_probs=33.1
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 53 AFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 53 ~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++.|..|||+.+|+ +...+.+.|+.|...|++...
T Consensus 35 ~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 35 KPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 58999999999999 999999999999999999874
No 386
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=90.54 E-value=0.14 Score=37.57 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=41.1
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++...
T Consensus 37 ~~~~iL~~l~~~---~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~ 83 (142)
T 2fbi_A 37 QQWRVIRILRQQ---GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRW 83 (142)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEee
Confidence 455677888775 58999999999999 999999999999999999874
No 387
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=90.51 E-value=0.086 Score=35.50 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=39.6
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.+..|.+.|... ++.|..||++.++...+++...+.++|+.|...|++...
T Consensus 10 ~e~~vL~~L~~~---~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKH---SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTS---SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 345567777663 689999999999731111788999999999999999875
No 388
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=90.50 E-value=0.14 Score=35.44 Aligned_cols=60 Identities=12% Similarity=-0.048 Sum_probs=43.7
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcch-HHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 42 LLEVIAKAGPGAFMSPKQIASQLPTKNSDAHIL-LDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 42 lfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~-l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
++..|...+ .+.|..|||+.+++ ++.. +.++++.|...|++..+. .|+ ..-.+.+|+.++
T Consensus 20 ~L~~l~~~~--~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~---~dr-R~~~~~LT~~G~ 80 (95)
T 2pg4_A 20 TLLEFEKKG--YEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEET---LSY-RVKTLKLTEKGR 80 (95)
T ss_dssp HHHHHHHTT--CCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEE---EET-TEEEEEECHHHH
T ss_pred HHHHHHhcC--CCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCC---CCC-CeEEEEECHhHH
Confidence 455565542 37999999999999 9999 999999999999998431 111 023466776655
No 389
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=90.49 E-value=0.15 Score=37.64 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=40.9
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++...
T Consensus 34 ~~~~iL~~l~~~---~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~ 80 (145)
T 2a61_A 34 AQFDILQKIYFE---GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRT 80 (145)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeec
Confidence 455677778764 58999999999999 999999999999999999874
No 390
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=90.40 E-value=0.2 Score=37.41 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=40.5
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++.|+..|... ++.|..+||+.+++ ++..+.++++.|...|++.+.
T Consensus 42 ~q~~iL~~l~~~---~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 42 SQYLVMLTLWEE---NPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp HHHHHHHHHHHS---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC-
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeC
Confidence 345577788764 58999999999999 999999999999999999875
No 391
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=90.40 E-value=0.35 Score=36.44 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=40.0
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQL-----PTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~-----g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|...|++.+.
T Consensus 24 R~~Il~~L~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 24 RHAILEYLVNSM--AHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp HHHHHHHHHHCS--SCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEE
Confidence 345888887643 689999999998 56 888999999999999999876
No 392
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=90.37 E-value=0.52 Score=36.94 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=51.9
Q ss_pred HHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCC-CCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 33 VLKSAIELDLLEVIAKAGPGAFMSPKQIASQLP-TKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 33 ~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g-~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
+|.-=.++.|+..|.. ++.|+.+||+.++ + +...+.+-|+.|...|+++...+....|..+..|++++.+.
T Consensus 19 ~La~P~Rl~il~~L~~----~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~ 90 (182)
T 4g6q_A 19 LLHHPLRWRITQLLIG----RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAG 90 (182)
T ss_dssp HTTSHHHHHHHHHTTT----SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTT
T ss_pred HhCCHHHHHHHHHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccc
Confidence 3334467778888865 6899999999996 8 77889999999999999975321001233345788777654
Q ss_pred cc
Q 044458 112 FL 113 (241)
Q Consensus 112 ~l 113 (241)
.+
T Consensus 91 ~~ 92 (182)
T 4g6q_A 91 DA 92 (182)
T ss_dssp TS
T ss_pred cC
Confidence 44
No 393
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=90.21 E-value=0.25 Score=47.05 Aligned_cols=49 Identities=10% Similarity=0.122 Sum_probs=31.9
Q ss_pred cccccccCchHHHHHHHHHHhcchhhHHHHHHhcCCCCCCCeEEEecCCchHHHHH
Q 044458 160 AFDYHGKDLRLNKIFNNGMFSHSTITMKKFLENYKGFEGLQSVVDVGGGIGASLDM 215 (241)
Q Consensus 160 ~~e~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~ 215 (241)
.||.+.+|+-+-+.|.+|+.. .+.+.++.-.+.+.|+|||||+|-+...
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~-------al~d~~~~~~~~~VVldVGaGtGpLs~~ 426 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVG-------ALKDLGADGRKTVVIYLLGGGRGPIGTK 426 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHH-------HHHHHHTTCCSEEEEEEESCTTCHHHHH
T ss_pred HHHHHcCChhhHHHHHHHHHH-------HHHHhhcccCCCcEEEEECCCCCHHHHH
Confidence 366667788777777777743 2222222112357899999999999753
No 394
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=90.16 E-value=0.17 Score=35.76 Aligned_cols=51 Identities=22% Similarity=0.213 Sum_probs=40.5
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 53 AFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 53 ~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
++.+..+||+.+++ +...|.|+|..|...|++..... .|| -+...+|+.++
T Consensus 35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~~--~D~--R~~v~LT~~G~ 85 (96)
T 2obp_A 35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVE--ADG--RGHASLTQEGA 85 (96)
T ss_dssp CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEC--TTS--CEEEEECHHHH
T ss_pred CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeecC--CCC--ceeEEECHHHH
Confidence 67999999999999 99999999999999999987521 233 23456666655
No 395
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=90.06 E-value=0.17 Score=40.83 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=43.6
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccccccc
Q 044458 53 AFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLT 114 (241)
Q Consensus 53 ~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~ 114 (241)
++.+..+||+.+++ ++..+.+.++.|...|++... . ...+.+|+.++.+.
T Consensus 19 ~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~----~----~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 19 NKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKD----K----KAGYLLTDLGLKLV 68 (214)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----T----TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEe----c----CCCeEECHHHHHHH
Confidence 68999999999999 999999999999999999975 1 46788999887443
No 396
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=90.00 E-value=0.28 Score=37.05 Aligned_cols=46 Identities=20% Similarity=0.078 Sum_probs=38.2
Q ss_pred cChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 40 LDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 40 lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+.+.-.|...+ ++.+..|||+.+++ ++..+.++++.|...|++.+.
T Consensus 34 ~~vL~~L~~~~--~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~ 79 (151)
T 4aik_A 34 WVTLYNINRLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRH 79 (151)
T ss_dssp HHHHHHHHHSC--TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcC--CCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEee
Confidence 34556666543 46788999999999 999999999999999999875
No 397
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=89.92 E-value=0.12 Score=38.24 Aligned_cols=64 Identities=9% Similarity=0.114 Sum_probs=46.7
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
.++.|+..|... ++ |..+||+.+++ ++..+.++++.|...|++.+... +.|+ ..-.+.+|+.++
T Consensus 38 ~~~~iL~~l~~~---~~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~~-~~D~-R~~~~~LT~~G~ 101 (144)
T 3f3x_A 38 LDFSILKATSEE---PR-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIRD-SKDR-RIVIVEITPKGR 101 (144)
T ss_dssp HHHHHHHHHHHS---CE-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEE-TTEE-EEEEEEECHHHH
T ss_pred HHHHHHHHHHHC---CC-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccC-CCCC-ceEEEEECHHHH
Confidence 345678888775 35 99999999999 99999999999999999987521 0100 011466776655
No 398
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=89.89 E-value=0.97 Score=34.49 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=57.6
Q ss_pred CCccccHHHHHHHHHHHhhhHHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCC-CCCCCCcchHHHHHHHHhcCCc
Q 044458 9 PTQISDEEANLFAMQLTSASVLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLP-TKNSDAHILLDRILRLLASYSV 87 (241)
Q Consensus 9 ~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g-~~~~~~~~~l~rlLr~L~~~g~ 87 (241)
+.+.+.......+...+.+.. ++.|++.|-..+ .+..|++||++.++ + +...++|-|+.|...|+
T Consensus 10 ~~~~~~f~~~~~~~~~l~~~t---------R~~IL~~Ll~~p-~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGL 75 (151)
T 3u1d_A 10 GERPNGFGDELERRRFVLHET---------RLDVLHQILAQP-DGVLSVEELLYRNPDE----TEANLRYHVDELVDRGI 75 (151)
T ss_dssp TBCCTTHHHHHHHHHHHCCHH---------HHHHHHHHHHST-TSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTS
T ss_pred CCCchhHHHHHHHHHHhcchH---------HHHHHHHHHcCC-CCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCC
Confidence 334444444555555555554 444555565432 14689999999999 8 89999999999999999
Q ss_pred cccccccC-CC--CccccceecCccccc
Q 044458 88 LNCSLHTL-PD--GGVERLYGLAPVCKF 112 (241)
Q Consensus 88 l~~~~~~~-~~--g~~~~~y~~t~~s~~ 112 (241)
+.+..... .. |---..|.+|+.++.
T Consensus 76 V~~~~~~~~~~~rGrP~k~Y~LT~~Gr~ 103 (151)
T 3u1d_A 76 VEKIPVPRAKSVDDPPTTFYAVTGEGIA 103 (151)
T ss_dssp EEEEECCCCTTSSSCCCEEEEECHHHHH
T ss_pred eEEeecCcCcccCCCCceEEEECHHHHH
Confidence 98542100 00 100127888888773
No 399
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=89.85 E-value=0.11 Score=42.82 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=44.6
Q ss_pred HHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 31 PMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 31 ~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
+.+|.--.++.|+..|.. ++.|..|||+.+|+ +...+.+.|+.|...|++..
T Consensus 6 lkaL~~~~R~~IL~~L~~----g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC----MECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT----TTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 345555567778888875 68999999999999 99999999999999999987
No 400
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=89.82 E-value=0.11 Score=41.71 Aligned_cols=66 Identities=17% Similarity=-0.033 Sum_probs=47.7
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFL 113 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l 113 (241)
++.|+..|... +++|..+||+.+++ +...+.++++.|...|++.+... +.|+ ..-.+.+|+.++.+
T Consensus 50 q~~iL~~L~~~---~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~-~~Dr-R~~~l~LT~~G~~~ 115 (207)
T 2fxa_A 50 EHHILWIAYQL---NGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKR-LNDK-RNTYVQLTEEGTEV 115 (207)
T ss_dssp HHHHHHHHHHH---TSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC--------CEEEECHHHHHH
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecC-CCCC-ceEEEEECHHHHHH
Confidence 34567777765 58999999999999 99999999999999999987521 1111 01256777766643
No 401
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=89.78 E-value=0.37 Score=35.47 Aligned_cols=63 Identities=14% Similarity=0.058 Sum_probs=44.3
Q ss_pred cChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 40 LDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 40 lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
+.|+..|... ++.|..|||+.+++ ++..+.++++.|...|++.+... +.|+ ..-.+.+|+.++
T Consensus 39 ~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~-~~D~-R~~~~~LT~~G~ 101 (140)
T 3hsr_A 39 YIVLMAIEND---EKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTRE-EKDE-RNLQISLTEQGK 101 (140)
T ss_dssp HHHHHHSCTT---CEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC---------CEEEECHHHH
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCC-CCCc-ceeeeeEChHHH
Confidence 3455666543 68999999999999 99999999999999999987521 1111 012456666555
No 402
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=89.76 E-value=0.17 Score=44.49 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=28.1
Q ss_pred CCCeEEEecCCchHHHHHH--------HHHC-------CCCcEEEccchH
Q 044458 198 GLQSVVDVGGGIGASLDMI--------ISKY-------PSIKGINFDLPH 232 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l--------~~~~-------P~l~~~v~DlP~ 232 (241)
+.-+|+|+|||+|..+..+ .+++ |.++++.=|||.
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~ 101 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPS 101 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTT
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCc
Confidence 3588999999999988766 3444 888899989884
No 403
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=89.60 E-value=0.15 Score=38.12 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=47.5
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc--ccccCCCCccccceecCcccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC--SLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~--~~~~~~~g~~~~~y~~t~~s~ 111 (241)
.++.|+..|... ++.|..+||+.+++ +...+.++++.|...|++.. ... +.|+ ..-.+.+|+.++
T Consensus 42 ~~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~-~~d~-R~~~~~LT~~G~ 108 (154)
T 2qww_A 42 QQLAMINVIYST---PGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTI-PNDS-MDLTLKLSKKGE 108 (154)
T ss_dssp HHHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC---CTTC-TTCEEEECHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCC-CCCC-ceeEeEECHHHH
Confidence 345577778774 58999999999999 99999999999999999987 421 1111 012466776655
No 404
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=89.51 E-value=0.23 Score=36.79 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=41.5
Q ss_pred HHhcChHHHHHhcCCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 37 AIELDLLEVIAKAGPGAFMSPKQIASQL-----PTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 37 a~~lglfd~L~~~~~~~~~t~~eLA~~~-----g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
--+.-|++.|.... ++.|++||.+.+ ++ +..-+.|.|+.|...|++.+.
T Consensus 11 ~qR~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 11 RQRAAISTLLETLD--DFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHCC--SCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEE
Confidence 34566888887653 689999999998 66 888999999999999999876
No 405
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=89.13 E-value=0.29 Score=38.69 Aligned_cols=42 Identities=21% Similarity=0.067 Sum_probs=35.5
Q ss_pred HHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 44 EVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 44 d~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+.+.+.| .|.|..|||+++|+ +...+.+.|+.|...|++...
T Consensus 16 ~~~~~~g--~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 16 EFIEKNG--YPPSVREIARRFRI----TPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHHS--SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHhC--CCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEec
Confidence 3444443 58999999999999 788999999999999999874
No 406
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=89.10 E-value=0.34 Score=34.02 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=47.8
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHh-hCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIAS-QLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLT 114 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~-~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~ 114 (241)
++.|+-.|.+. ++.|..+||+ ..++ +...+.|=++.|...|++..+ | ++ +.+|+.++-+.
T Consensus 18 QfsiL~~L~~~---~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~------~--~D-l~LT~~G~~~l 78 (95)
T 1bja_A 18 TATILITIAKK---DFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKS------G--DG-LIITGEAQDII 78 (95)
T ss_dssp HHHHHHHHHHS---TTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEE------T--TE-EEECHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecC------C--CC-eeeCHhHHHHH
Confidence 44566677775 5899999999 9999 999999999999999999832 1 34 88888776443
No 407
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=89.10 E-value=0.18 Score=37.23 Aligned_cols=45 Identities=9% Similarity=0.087 Sum_probs=37.6
Q ss_pred ChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 41 DLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 41 glfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++..|.... ++.|..|||+.+|+ +...+.++|+.|...|++...
T Consensus 30 ~il~~L~~~~--~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 30 AVYAILYLSD--KPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHCS--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3556664222 58999999999999 999999999999999999874
No 408
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=89.03 E-value=0.22 Score=43.98 Aligned_cols=33 Identities=24% Similarity=0.178 Sum_probs=28.4
Q ss_pred CCeEEEecCCchHHHHHHHHH-----------------CCCCcEEEccch
Q 044458 199 LQSVVDVGGGIGASLDMIISK-----------------YPSIKGINFDLP 231 (241)
Q Consensus 199 ~~~vvDVGGG~G~~~~~l~~~-----------------~P~l~~~v~DlP 231 (241)
.-+|+|+||++|..+..++.. .|+++++.=|||
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp 102 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLF 102 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCC
Confidence 688999999999999877766 588889999999
No 409
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=89.01 E-value=0.18 Score=37.18 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=39.9
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++...
T Consensus 31 ~~~iL~~l~~~---~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 31 QYLYLVRVCEN---PGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHC---cCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEee
Confidence 34467777764 58999999999999 999999999999999999875
No 410
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=88.95 E-value=0.19 Score=38.38 Aligned_cols=37 Identities=24% Similarity=0.178 Sum_probs=27.1
Q ss_pred CCCCeEEEecCCch-HHHHHHHHHCCCCcEEEccc-hHHH
Q 044458 197 EGLQSVVDVGGGIG-ASLDMIISKYPSIKGINFDL-PHVI 234 (241)
Q Consensus 197 ~~~~~vvDVGGG~G-~~~~~l~~~~P~l~~~v~Dl-P~vi 234 (241)
....++||||||.| ..+..|++. -++.++..|+ |..+
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av 72 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHG 72 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSST
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCcccc
Confidence 34579999999999 477777763 4677888887 4433
No 411
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=88.87 E-value=0.18 Score=38.57 Aligned_cols=47 Identities=19% Similarity=0.093 Sum_probs=40.4
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++.|+..|...+ +++|..|||+.+++ +...+.++++.|...|++.+.
T Consensus 55 q~~vL~~L~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~ 101 (166)
T 3deu_A 55 HWVTLHNIHQLP--PDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQ 101 (166)
T ss_dssp HHHHHHHHHHSC--SSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEee
Confidence 445777777632 57999999999999 999999999999999999875
No 412
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=88.78 E-value=0.19 Score=47.87 Aligned_cols=39 Identities=8% Similarity=-0.098 Sum_probs=31.6
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 199 LQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 199 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..+|||+|||+|.+++.+++... -+++..|+ |..++.++
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~ 579 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAE 579 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHH
T ss_pred CCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHH
Confidence 47999999999999999988533 35899999 77777654
No 413
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=88.38 E-value=0.25 Score=36.96 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=32.5
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 53 AFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 53 ~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
...|.++||+.+|+ ++.-+.++|+.|...|++...
T Consensus 50 ~~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 50 YFPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp CSCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 45899999999999 999999999999999999873
No 414
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=87.97 E-value=0.29 Score=38.44 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=45.7
Q ss_pred HHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCc-cccccccCCCCccccceecCcc
Q 044458 37 AIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSV-LNCSLHTLPDGGVERLYGLAPV 109 (241)
Q Consensus 37 a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~-l~~~~~~~~~g~~~~~y~~t~~ 109 (241)
--...|.+.|.+.+ +++|..|||+.+|+ +.+.++|=++.|...|+ +... .+.|.+...
T Consensus 21 ~R~~~Il~~L~~~~--~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~~---------~~Gy~l~~~ 79 (187)
T 1j5y_A 21 ERLKSIVRILERSK--EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT---------PRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHCS--SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE---------TTEEECCTT
T ss_pred HHHHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE---------CCEEEECCc
Confidence 34567888897643 57999999999999 99999999999999998 6532 345666654
No 415
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=87.79 E-value=0.46 Score=33.76 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=34.7
Q ss_pred HHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhc
Q 044458 36 SAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLAS 84 (241)
Q Consensus 36 ~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~ 84 (241)
.+.++||+..|.. |..|..|||+.+|+ +...+.|+=|.|..
T Consensus 44 l~~R~~l~~~L~~----ge~TQREIA~~lGi----S~stISRi~r~L~~ 84 (101)
T 1jhg_A 44 LGTRVRIIEELLR----GEMSQRELKNELGA----GIATITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHHHH----CCSCHHHHHHHHCC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----CCcCHHHHHHHHCC----ChhhhhHHHHHHHH
Confidence 4456899999987 67999999999999 99999998777743
No 416
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=87.75 E-value=0.19 Score=46.37 Aligned_cols=49 Identities=18% Similarity=0.053 Sum_probs=34.5
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCC------------------CCcEEEccc-hHHHhcC
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYP------------------SIKGINFDL-PHVIQDA 237 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P------------------~l~~~v~Dl-P~vi~~a 237 (241)
.+++..+ .....+|+|.+||+|.++..+.+... ..++..+|+ |.+++.|
T Consensus 160 ~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA 227 (541)
T 2ar0_A 160 TIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 227 (541)
T ss_dssp HHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred HHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence 3444444 34457999999999999988876532 246889998 6666554
No 417
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=87.61 E-value=0.45 Score=41.13 Aligned_cols=39 Identities=15% Similarity=0.315 Sum_probs=36.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCcEEEccchHHHhc
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPSIKGINFDLPHVIQD 236 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~DlP~vi~~ 236 (241)
+...||.+|||-......+...+|+++.+=+|+|+|++.
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~ 135 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVEL 135 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHH
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHH
Confidence 468999999999999999999999999999999999874
No 418
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=86.97 E-value=0.24 Score=38.35 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=40.2
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++.|+..|...++.+++|..+||+.+++ +...+.++++.|...|++.+.
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECC
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEec
Confidence 4457788877531113999999999999 999999999999999999874
No 419
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=86.79 E-value=0.36 Score=46.75 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=34.2
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCC---CcEEEccc-hHHHhcC
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPS---IKGINFDL-PHVIQDA 237 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~---l~~~v~Dl-P~vi~~a 237 (241)
+....+|+|.|||+|.++.++++..++ .++..+|+ |.+++.|
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LA 364 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELL 364 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHH
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHH
Confidence 445689999999999999999998874 46899998 6666554
No 420
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=86.65 E-value=0.33 Score=37.99 Aligned_cols=72 Identities=11% Similarity=0.032 Sum_probs=52.5
Q ss_pred HHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccccccc
Q 044458 36 SAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLT 114 (241)
Q Consensus 36 ~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~ 114 (241)
...++.|+..|...+ ++++|..+||+.+++ +...+.++++.|...|++..... +.|+ ..-.+.+|+.++.+.
T Consensus 40 t~~q~~vL~~L~~~~-~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~-~~Dr-R~~~l~LT~~G~~~~ 111 (189)
T 3nqo_A 40 TSRQYMTILSILHLP-EEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPS-PHDK-RAINVKVTDLGKKVM 111 (189)
T ss_dssp CHHHHHHHHHHHHSC-GGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEC-SSCS-SCEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccC-CCCC-CeeEEEECHHHHHHH
Confidence 345566778887532 158999999999999 99999999999999999987521 1111 124577888777444
No 421
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=86.49 E-value=0.5 Score=35.33 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=45.5
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCC-CCCCcchHHHHHHHHhcCCccccccccCCCCccccceecC
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTK-NSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLA 107 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~-~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t 107 (241)
-+.-|++.|...+ ++.|++||.+.+.-. +.++..-+.|.|+.|...|++.+.. ..+| ..+|..+
T Consensus 15 qR~~Il~~L~~~~--~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~--~~~g--~~~Y~~~ 79 (139)
T 3mwm_A 15 QRAAVSAALQEVE--EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLR--TAEG--ESVYRRC 79 (139)
T ss_dssp HHHHHHHHHTTCS--SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEE--CTTS--CEEEECC
T ss_pred HHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEE--cCCC--ceEEEEC
Confidence 4556788887754 689999999987310 1127889999999999999998752 1122 3567654
No 422
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=86.43 E-value=0.31 Score=43.11 Aligned_cols=41 Identities=15% Similarity=0.026 Sum_probs=34.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCC-CcEEEccc-hHHHhcCC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYPS-IKGINFDL-PHVIQDAP 238 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~a~ 238 (241)
...+|||+++|+|.+++.++++.++ -+++..|+ |..++.++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~ 94 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMK 94 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHH
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 3579999999999999999998776 46899999 78777654
No 423
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.41 E-value=0.25 Score=34.75 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=43.1
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
-|.-|+.+|.++|+ .+++..||..++++ +...+.++|+.|...+++...
T Consensus 38 ~E~lVy~~I~~aGn-~GIw~kdL~~~tnL----~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 38 QEKLVYQIIEDAGN-KGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp HHHHHHHHHHHHTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCEEEe
Confidence 45567888988763 68999999999999 999999999999999999875
No 424
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=85.85 E-value=0.61 Score=35.33 Aligned_cols=49 Identities=20% Similarity=0.370 Sum_probs=41.3
Q ss_pred HHhcChHHHHHhcCCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 37 AIELDLLEVIAKAGPGAFMSPKQIASQL-----PTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 37 a~~lglfd~L~~~~~~~~~t~~eLA~~~-----g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.-+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|...|++.+.
T Consensus 27 ~qR~~IL~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 27 KQREEVVSVLYRSG--THLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp HHHHHHHHHHHHCS--SCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEE
Confidence 34455888887753 689999999998 56 888999999999999999875
No 425
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=85.11 E-value=0.24 Score=37.14 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=37.3
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 42 LLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 42 lfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++..|...+ ++++|..+||+.+++ ++..+.++++.|...|++.+.
T Consensus 40 vL~~L~~~~-~~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~ 84 (147)
T 4b8x_A 40 ALVLLTFSK-SGELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKR 84 (147)
T ss_dssp HHHHHHTSG-GGEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEe
Confidence 445554321 257999999999999 999999999999999999875
No 426
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=85.06 E-value=0.79 Score=37.87 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=34.8
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL 230 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 230 (241)
...+.+.+. +....+|||+||++|.++..++....--++..+|+
T Consensus 67 L~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdv 110 (267)
T 3p8z_A 67 LQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTK 110 (267)
T ss_dssp HHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEec
Confidence 445666664 77678999999999999998877776667888887
No 427
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=84.89 E-value=0.21 Score=36.01 Aligned_cols=50 Identities=10% Similarity=0.207 Sum_probs=38.2
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+..|...|... ++.|..|||+.++...+++...+.++|+.|...|++...
T Consensus 12 ~~~vL~~l~~~---~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 12 EWEVMNIIWMK---KYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHHH---SSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEE
Confidence 34456666553 589999999999930001689999999999999999874
No 428
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=84.85 E-value=0.91 Score=32.88 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=48.6
Q ss_pred HHHHHHhcChHHHHHhcCCCCCCCHHHHHhhC------CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceec
Q 044458 33 VLKSAIELDLLEVIAKAGPGAFMSPKQIASQL------PTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGL 106 (241)
Q Consensus 33 ~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~------g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~ 106 (241)
.++-.+++=|...|.. +|.+--||++.+ ++ ++..+...|+.|...|++.....+...|-.-..|++
T Consensus 7 l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~L 78 (117)
T 4esf_A 7 MLKGSLEGCVLEIISR----RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSL 78 (117)
T ss_dssp HHHHHHHHHHHHHHHH----SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEE
T ss_pred HHHChHHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEE
Confidence 3444455556667776 688999999887 67 899999999999999999865211001101236888
Q ss_pred Ccccc
Q 044458 107 APVCK 111 (241)
Q Consensus 107 t~~s~ 111 (241)
|+.++
T Consensus 79 T~~G~ 83 (117)
T 4esf_A 79 NEAGR 83 (117)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 88776
No 429
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=84.83 E-value=0.39 Score=41.93 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 29 VLPMVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 29 ~~~~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
..+++++...+..|++.|. . +++|..|||+.+|+ +...+.++++.|...|++.+.
T Consensus 12 ~~~~~~~~~~~~~il~~l~-~---~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 12 HMPKSVRAENISRILKRIM-K---SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp ----------CCCSHHHHH-H---SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred cCchhHHHHHHHHHHHHHH-c---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 4466777788888999999 6 69999999999999 999999999999999999874
No 430
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=84.74 E-value=1.1 Score=32.23 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=49.5
Q ss_pred HHHHHhcChHHHHHhcCCCCCCCHHHHHhhCC--------CCCCCCc-chHHHHHHHHhcCCccccccccCCCCccccce
Q 044458 34 LKSAIELDLLEVIAKAGPGAFMSPKQIASQLP--------TKNSDAH-ILLDRILRLLASYSVLNCSLHTLPDGGVERLY 104 (241)
Q Consensus 34 L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g--------~~~~~~~-~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y 104 (241)
+.-..++-|...|.. +|.+.-||++.+. + ++ ..+.+.|+.|...|++.....+ .+|-.--.|
T Consensus 10 ~~~~~~~~IL~~L~~----~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~-~~~~~r~~Y 80 (118)
T 2esh_A 10 RGWWLASTILLLVAE----KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDT-TVSPPRKIY 80 (118)
T ss_dssp HHHHHHHHHHHHHHH----SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEEC-SSSSCEEEE
T ss_pred ccchHHHHHHHHHHc----CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeec-CCCCCceEE
Confidence 344456667777766 5899999999883 6 88 8999999999999999765211 011112468
Q ss_pred ecCccccc
Q 044458 105 GLAPVCKF 112 (241)
Q Consensus 105 ~~t~~s~~ 112 (241)
++|+.++.
T Consensus 81 ~LT~~G~~ 88 (118)
T 2esh_A 81 RITPQGKL 88 (118)
T ss_dssp EECHHHHH
T ss_pred EEChHHHH
Confidence 88887763
No 431
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=84.33 E-value=0.44 Score=35.33 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=40.0
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.+..|..+|.... ++.|..||++.++...+++...+.++|+-|...|++.+.
T Consensus 10 ~e~~vL~~L~~~~--~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRT--EPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCS--SCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4556677776621 589999999999821111888999999999999999975
No 432
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=83.83 E-value=0.36 Score=34.82 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=39.9
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.+..|...|... ++.|..|||+.++...++++..+.++|+-|...|++.+.
T Consensus 11 ~q~~vL~~L~~~---~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 11 AEWDVMNIIWDK---KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHS---SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 355566777764 589999999999731112788999999999999999974
No 433
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=83.56 E-value=1 Score=38.23 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=30.4
Q ss_pred HHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc
Q 044458 188 KFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL 230 (241)
Q Consensus 188 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 230 (241)
.+.+. .-+....+|||+||+.|.++..+++..+-..++.+|+
T Consensus 72 ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdl 113 (300)
T 3eld_A 72 WLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTL 113 (300)
T ss_dssp HHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred HHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEe
Confidence 34444 3256779999999999999999998765444444554
No 434
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=83.52 E-value=1 Score=32.44 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=49.3
Q ss_pred HHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhC--------CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccc
Q 044458 32 MVLKSAIELDLLEVIAKAGPGAFMSPKQIASQL--------PTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERL 103 (241)
Q Consensus 32 ~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~--------g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~ 103 (241)
+.++-..++=|...|.+ +|.+--+|.+.+ ++ ++..+.+.|+.|...|++.....+..+|-.-..
T Consensus 7 ~~~~g~l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~ 78 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ----GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRKY 78 (116)
T ss_dssp HHHHHHHHHHHHHHHHH----CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEEE
T ss_pred HHHhchHHHHHHHHHHh----CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCceE
Confidence 44455566666777776 688888888876 56 899999999999999999864211011111236
Q ss_pred eecCcccc
Q 044458 104 YGLAPVCK 111 (241)
Q Consensus 104 y~~t~~s~ 111 (241)
|++|+.++
T Consensus 79 Y~LT~~G~ 86 (116)
T 3f8b_A 79 YRLTEIGH 86 (116)
T ss_dssp EEECHHHH
T ss_pred EEECHHHH
Confidence 88888766
No 435
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=83.38 E-value=1.2 Score=37.70 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=26.2
Q ss_pred CCCCCeEEEecC------CchHHHHHHHHHCC-CCcEEEccch
Q 044458 196 FEGLQSVVDVGG------GIGASLDMIISKYP-SIKGINFDLP 231 (241)
Q Consensus 196 ~~~~~~vvDVGG------G~G~~~~~l~~~~P-~l~~~v~DlP 231 (241)
+....+|||||| |.|. ..+++..| +.+++..|+-
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis 101 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLN 101 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECC
Confidence 566689999999 5587 55566777 6889999983
No 436
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=83.24 E-value=0.23 Score=43.02 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=0.0
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLT 114 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~ 114 (241)
+..|...|... +++|..|||+.+++ ++..++|.|+.|...|++... .....+|+.++.+.
T Consensus 22 ~~~iL~~l~~~---~~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~~---------~~gi~LT~~G~~~~ 81 (345)
T 2o0m_A 22 RFQILRNIYWM---QPIGRRSLSETMGI----TERVLRTETDVLKQLNLIEPS---------KSGMTLTERGLEVY 81 (345)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---------ecceEEcHHHHHHH
Confidence 45677777664 68999999999999 999999999999999999742 22355776666444
No 437
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=83.12 E-value=0.84 Score=38.87 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL 230 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 230 (241)
...+.+.+. +.....|||+||++|.++..++....--++..+|+
T Consensus 83 L~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdv 126 (321)
T 3lkz_A 83 LRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTK 126 (321)
T ss_dssp HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEc
Confidence 345556665 66667999999999999997777665556777776
No 438
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=82.87 E-value=0.74 Score=40.41 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=42.8
Q ss_pred HHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 35 KSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 35 ~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+..-+..|++.|... +++|..|||+.+|+ +...+.++++.|...|++.+.
T Consensus 14 r~~n~~~il~~l~~~---~~~sr~~la~~~~l----s~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 14 KQTNAGAVYRLIDQL---GPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHHHHHHSS---CSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred HHhHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEee
Confidence 344445578888875 69999999999999 999999999999999999874
No 439
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=82.73 E-value=1.8 Score=27.25 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=41.5
Q ss_pred HHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCc
Q 044458 43 LEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAP 108 (241)
Q Consensus 43 fd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 108 (241)
+..|+.-. .++|+.|+|...++ +-+..+.-|..|...|-+.+. ..+|++-|
T Consensus 9 Lall~s~~--QGMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRKR---------sSRYrlkp 59 (68)
T 3i71_A 9 LALLTSVR--QGMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRKR---------SSRYRLKP 59 (68)
T ss_dssp HHHHHHCT--TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------CCEEEECC
T ss_pred HHHHHHHh--ccccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhhh---------ccccccCc
Confidence 34455433 58999999999999 899999999999999999874 46787655
No 440
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=82.72 E-value=0.37 Score=44.53 Aligned_cols=38 Identities=18% Similarity=0.019 Sum_probs=29.7
Q ss_pred CeEEEecCCchHHHHHHHHHCC---------------CCcEEEccc-hHHHhcC
Q 044458 200 QSVVDVGGGIGASLDMIISKYP---------------SIKGINFDL-PHVIQDA 237 (241)
Q Consensus 200 ~~vvDVGGG~G~~~~~l~~~~P---------------~l~~~v~Dl-P~vi~~a 237 (241)
.+|+|.+||+|.++.++.+..+ +.++..+|+ |.++..|
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA 299 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLA 299 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHH
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHH
Confidence 4999999999999998865433 467899998 6666554
No 441
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=82.36 E-value=1.1 Score=33.22 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=39.1
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQL-----PTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~-----g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+.-|++.|...+ +++.|++||.+.+ ++ +..-+.|.|+.|...|++.+.
T Consensus 20 R~~Il~~L~~~~-~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 72 (136)
T 1mzb_A 20 RVKILQMLDSAE-QRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRH 72 (136)
T ss_dssp HHHHHHHHHCC--CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEE
Confidence 344788887642 1489999999998 56 888999999999999999876
No 442
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=81.44 E-value=0.6 Score=37.82 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=40.2
Q ss_pred CCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccccccc
Q 044458 55 MSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLT 114 (241)
Q Consensus 55 ~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~ 114 (241)
.+..+||+.+++ +...+.++|+.|...|++.+. . ...+.+|+.++.+.
T Consensus 25 ~~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~----~----~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 25 PLRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA----G----DRHLELTEKGRALA 72 (230)
T ss_dssp CCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----T----TSCEEECHHHHHHH
T ss_pred CcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe----C----CccEEECHHHHHHH
Confidence 344999999999 999999999999999999974 1 45788998887443
No 443
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=81.22 E-value=2.1 Score=37.86 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=31.9
Q ss_pred CCCCeEEEecCCchHHHHHHH-HHCCC-CcEEEccc-hHHHh
Q 044458 197 EGLQSVVDVGGGIGASLDMII-SKYPS-IKGINFDL-PHVIQ 235 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~-~~~P~-l~~~v~Dl-P~vi~ 235 (241)
+....|+|||++.|.++..++ +..++ .+++.++- |...+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~ 266 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQ 266 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHH
Confidence 456899999999999999988 67876 68888886 55544
No 444
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=81.07 E-value=0.83 Score=34.20 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=33.8
Q ss_pred cChHHHHHhcCC--CCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 40 LDLLEVIAKAGP--GAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 40 lglfd~L~~~~~--~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
+.++..|...+. ++++|..|||+.+++ ++..+.++++.|...|++..
T Consensus 36 ~~vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~ 84 (148)
T 4fx0_A 36 FSTLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRV 84 (148)
T ss_dssp HHHHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC-
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEe
Confidence 345555654321 246899999999999 99999999999999999954
No 445
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=80.66 E-value=0.76 Score=36.78 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=40.0
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 53 AFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 53 ~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
++++..+||+.+++ .+..++..++.|...|+++.. .+...+|+.++
T Consensus 29 ~~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~---------~~Gv~LTe~G~ 74 (200)
T 2p8t_A 29 EPLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK---------QRGHFLTLKGK 74 (200)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----------CEEECHHHH
T ss_pred CCccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---------CCCeEECHHHH
Confidence 48999999999999 999999999999999999874 35668998776
No 446
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=80.46 E-value=0.67 Score=37.47 Aligned_cols=53 Identities=11% Similarity=0.165 Sum_probs=42.3
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccccccc
Q 044458 53 AFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLT 114 (241)
Q Consensus 53 ~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~ 114 (241)
++.|..++|+.+++ +...+.+.++.|...|+|.+.. .+. ...+.+|+.++.+.
T Consensus 26 ~~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~---~~R--~~~v~LT~~G~~l~ 78 (230)
T 3cta_A 26 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTV---TKR--GQILNITEKGLDVL 78 (230)
T ss_dssp EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE---ETT--EEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEE---cCC--eEEEEECHHHHHHH
Confidence 46899999999999 9999999999999999998752 001 35677888776444
No 447
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=80.23 E-value=0.77 Score=37.84 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=35.8
Q ss_pred HHHHHhcCCCCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc-hHHHhcCC
Q 044458 187 KKFLENYKGFEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL-PHVIQDAP 238 (241)
Q Consensus 187 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 238 (241)
..++..+. .....|||..||+|..+.+..+. +-+++.+|+ |..++.++
T Consensus 203 ~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 203 ERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 34454443 34579999999999999998887 568999999 66666543
No 448
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=80.09 E-value=0.93 Score=34.44 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=39.6
Q ss_pred cChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 40 LDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 40 lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
-.|.++|.+ |+.|..+||+++|+ +...++-.|..|.-.|++.+.
T Consensus 14 ~~ILE~Lk~----G~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~V 57 (165)
T 2vxz_A 14 RDILALLAD----GCKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRV 57 (165)
T ss_dssp HHHHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHh----CCccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEE
Confidence 457888883 79999999999999 999999999999999999875
No 449
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=80.07 E-value=1.2 Score=39.51 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=44.4
Q ss_pred HHHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 34 LKSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 34 L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++..-+..|++.|... +++|..|||+.+|+ +...+.++++.|...|++.+.
T Consensus 36 ~r~~n~~~il~~l~~~---~~~sr~ela~~~gl----s~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 36 IKQINAGRVYKLIDQK---GPISRIDLSKESEL----APASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 4555556689999875 69999999999999 999999999999999999874
No 450
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=79.58 E-value=0.58 Score=33.96 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=50.6
Q ss_pred HHHHHHHhcChHHHHHhcCCCCCCCHHHHHhhCC------CCCCCCcchHHHHHHHHhcCCccccccccCCCCcccccee
Q 044458 32 MVLKSAIELDLLEVIAKAGPGAFMSPKQIASQLP------TKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYG 105 (241)
Q Consensus 32 ~~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g------~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~ 105 (241)
..++-..++-|...|.. +|.+.-||++.+. + ++..+.+.|+.|...|++.....+...|-.-..|+
T Consensus 9 ~l~~g~l~~~IL~lL~~----~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~ 80 (117)
T 3elk_A 9 RILHGLITLYILKELVK----RPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYH 80 (117)
T ss_dssp HHHHHHHHHHHHHHHHH----SCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEE
T ss_pred HHHhhHHHHHHHHHHHc----CCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEE
Confidence 44455566667777776 6888888888876 6 78899999999999999986421001111123788
Q ss_pred cCcccc
Q 044458 106 LAPVCK 111 (241)
Q Consensus 106 ~t~~s~ 111 (241)
+|+.++
T Consensus 81 lT~~G~ 86 (117)
T 3elk_A 81 ITDAGK 86 (117)
T ss_dssp ECHHHH
T ss_pred ECHHHH
Confidence 998887
No 451
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=79.47 E-value=1.4 Score=37.51 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=32.8
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccc-cc
Q 044458 53 AFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLN-CS 91 (241)
Q Consensus 53 ~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~-~~ 91 (241)
+++|..|||+++|+ ++..++|.|..|...|++. +.
T Consensus 20 ~~~~~~ela~~l~v----S~~tIrRdL~~l~~~G~v~iri 55 (315)
T 2w48_A 20 QDMTQAQIARELGI----YRTTISRLLKRGREQGIVTIAI 55 (315)
T ss_dssp SCCCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEEe
Confidence 57999999999999 9999999999999999997 54
No 452
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=79.44 E-value=0.42 Score=41.79 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=26.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHH----------------CCCCcEEEccchH
Q 044458 197 EGLQSVVDVGGGIGASLDMIISK----------------YPSIKGINFDLPH 232 (241)
Q Consensus 197 ~~~~~vvDVGGG~G~~~~~l~~~----------------~P~l~~~v~DlP~ 232 (241)
++.-+|+|+||++|..+..++.. .|.++++.-|||.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~ 101 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPG 101 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTT
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCc
Confidence 45578999999999776543333 5777888889884
No 453
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=79.10 E-value=2.7 Score=28.99 Aligned_cols=34 Identities=6% Similarity=0.043 Sum_probs=30.2
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 53 AFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 53 ~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
.+.|+++||+.+|+ +++.|.|+++......+-..
T Consensus 18 ~~~~~~~lA~~~~~----S~~~l~r~fk~~~g~s~~~~ 51 (103)
T 3lsg_A 18 SQFTLSVLSEKLDL----SSGYLSIMFKKNFGIPFQDY 51 (103)
T ss_dssp TTCCHHHHHHHTTC----CHHHHHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHCcCHHHH
Confidence 47999999999999 99999999999888776654
No 454
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=78.96 E-value=0.91 Score=37.48 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=40.5
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.++.|+..|...++ +++|..|||+.+++ ++..+.++++-|...|++.+.
T Consensus 159 ~q~~vL~~L~~~~~-~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~ 207 (250)
T 1p4x_A 159 VEFTILAIITSQNK-NIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKE 207 (250)
T ss_dssp HHHHHHHHHHTTTT-CCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEE
T ss_pred HHHHHHHHHHhCCC-CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee
Confidence 34456777776431 35999999999999 999999999999999999875
No 455
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=78.90 E-value=2.8 Score=29.17 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=34.9
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 42 LLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 42 lfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
+.+.|.....+.+.|+++||+.+|+ +++.+.|+++......+-..
T Consensus 8 ~~~~i~~~~~~~~~~~~~lA~~~~~----S~~~l~r~fk~~~G~s~~~~ 52 (107)
T 2k9s_A 8 ACQYISDHLADSNFDIASVAQHVCL----SPSRLSHLFRQQLGISVLSW 52 (107)
T ss_dssp HHHHHHHTSSCSSCCHHHHHHHTTS----CHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHCC----CHHHHHHHHHHHHCcCHHHH
Confidence 3455554331257999999999999 99999999998888776665
No 456
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=78.58 E-value=1.5 Score=31.69 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=48.3
Q ss_pred HHHHHHhcChHHHHHhcCCCCCCCHHHHHhhC------CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceec
Q 044458 33 VLKSAIELDLLEVIAKAGPGAFMSPKQIASQL------PTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGL 106 (241)
Q Consensus 33 ~L~~a~~lglfd~L~~~~~~~~~t~~eLA~~~------g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~ 106 (241)
.++-.+++=|...|.. +|.+--||++.+ ++ ++..+...|+-|...|++.....+..+|-.-..|++
T Consensus 9 l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~l 80 (116)
T 3hhh_A 9 LLKGILEGLVLAIIQR----KETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRL 80 (116)
T ss_dssp HHTTHHHHHHHHHHHH----SCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEE
T ss_pred HHhhhHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEE
Confidence 3344445556667776 688888999887 56 899999999999999999864211011111236888
Q ss_pred Ccccc
Q 044458 107 APVCK 111 (241)
Q Consensus 107 t~~s~ 111 (241)
|+.++
T Consensus 81 T~~G~ 85 (116)
T 3hhh_A 81 TSSGE 85 (116)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 88776
No 457
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=78.48 E-value=0.82 Score=34.48 Aligned_cols=67 Identities=10% Similarity=0.107 Sum_probs=45.9
Q ss_pred HHhcChHHHHHhcCCCCCCCHHHHHhhC--------CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCc
Q 044458 37 AIELDLLEVIAKAGPGAFMSPKQIASQL--------PTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAP 108 (241)
Q Consensus 37 a~~lglfd~L~~~~~~~~~t~~eLA~~~--------g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 108 (241)
-.++-|+.+|.. ++.+.-||++.+ ++ ++..|.+.|+-|...|++.....+...|-.--.|++|+
T Consensus 41 ~~~~~IL~~L~~----~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~ 112 (145)
T 1xma_A 41 YVDTIILSLLIE----GDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITP 112 (145)
T ss_dssp THHHHHHHHHHH----CCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECH
T ss_pred cHHHHHHHHHHh----CCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECH
Confidence 345556666765 588888888887 57 89999999999999999976421100110124678887
Q ss_pred ccc
Q 044458 109 VCK 111 (241)
Q Consensus 109 ~s~ 111 (241)
.++
T Consensus 113 ~G~ 115 (145)
T 1xma_A 113 EGI 115 (145)
T ss_dssp HHH
T ss_pred HHH
Confidence 666
No 458
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=77.88 E-value=0.6 Score=43.10 Aligned_cols=40 Identities=15% Similarity=-0.020 Sum_probs=32.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCC---CCcEEEccc-hHHHhcC
Q 044458 198 GLQSVVDVGGGIGASLDMIISKYP---SIKGINFDL-PHVIQDA 237 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~~P---~l~~~v~Dl-P~vi~~a 237 (241)
...+|+|.+||+|.++..+.+... ..++..+|+ |.++..|
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA 264 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLA 264 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHH
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHH
Confidence 457999999999999999998853 567899999 6665544
No 459
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=77.43 E-value=0.83 Score=31.91 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=31.9
Q ss_pred CCC-CHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 53 AFM-SPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 53 ~~~-t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
..+ |..+||+.+|+ +...+++-|+.|...|++...
T Consensus 33 ~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 33 DTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp SBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEE
T ss_pred CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 455 99999999999 999999999999999999864
No 460
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=76.74 E-value=1.8 Score=33.56 Aligned_cols=65 Identities=15% Similarity=0.326 Sum_probs=46.9
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhC--------CCCCCCCcchHHHHHHHHhcCCccccccccCCCCc-cccceecCc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQL--------PTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGG-VERLYGLAP 108 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~--------g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~-~~~~y~~t~ 108 (241)
+++-|...|.. +|.+.-||++.+ ++ ++..+.+.|+.|...|++...... .+|. ....|++|+
T Consensus 3 l~~~iL~lL~~----~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~-~~~~~~r~~Y~lT~ 73 (179)
T 1yg2_A 3 LPHVILTVLST----RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEP-QEGKPDRKVYSITQ 73 (179)
T ss_dssp HHHHHHHHHHH----CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC----------CEEECH
T ss_pred hHHHHHHHHhc----CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeec-CCCCCCceEEEeCh
Confidence 34556777776 699999999988 46 889999999999999999864211 1110 124799999
Q ss_pred ccc
Q 044458 109 VCK 111 (241)
Q Consensus 109 ~s~ 111 (241)
.++
T Consensus 74 ~G~ 76 (179)
T 1yg2_A 74 AGR 76 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 461
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=76.55 E-value=1.6 Score=35.23 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=41.2
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccccccc
Q 044458 54 FMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLT 114 (241)
Q Consensus 54 ~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~ 114 (241)
+.+..+||+.+++ ++..+.++++.|...|++.+. . ...+.+|+.++.+.
T Consensus 24 ~~~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r~----~----~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 24 TPLRARIAERLEQ----SGPTVSQTVARMERDGLVVVA----S----DRSLQMTPTGRTLA 72 (226)
T ss_dssp CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----T----TSBEEECHHHHHHH
T ss_pred CccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe----C----CCCeEECHHHHHHH
Confidence 3456999999999 999999999999999999974 1 46789999887544
No 462
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=76.35 E-value=4.9 Score=29.26 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=33.7
Q ss_pred HHHHhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHh
Q 044458 35 KSAIELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLA 83 (241)
Q Consensus 35 ~~a~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~ 83 (241)
..+-++.|+..|.+ +.|..|||+.+|+ +..-+.|+-|.|-
T Consensus 61 aLs~R~eV~klL~~-----G~syreIA~~~g~----S~aTIsRv~r~L~ 100 (119)
T 3kor_A 61 SLSQRLQVAKMIKQ-----GYTYATIEQESGA----STATISRVKRSLQ 100 (119)
T ss_dssp HHHHHHHHHHHHHH-----TCCHHHHHHHHCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-----CCCHHHHHHHHCC----CHHHHHHHHHHHh
Confidence 44455889999987 4999999999999 9999999888774
No 463
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=75.94 E-value=2.4 Score=31.17 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=31.9
Q ss_pred CCC-CHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 53 AFM-SPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 53 ~~~-t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
..+ |..+||+.+|+ +..-+++-|+.|...|++...
T Consensus 26 ~~LPse~~La~~~gv----Sr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 26 QRVPSTNELAAFHRI----NPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp SCBCCHHHHHHHTTC----CHHHHHHHHHHHHTTTSEEEE
T ss_pred CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 455 89999999999 999999999999999999864
No 464
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=75.89 E-value=1.8 Score=24.98 Aligned_cols=27 Identities=11% Similarity=0.114 Sum_probs=22.8
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhc
Q 044458 54 FMSPKQIASQLPTKNSDAHILLDRILRLLAS 84 (241)
Q Consensus 54 ~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~ 84 (241)
..|..+||+.+|+ +...+.++++....
T Consensus 21 g~s~~~IA~~lgi----s~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 21 NVSLHEMSRKISR----SRHCIRVYLKDPVS 47 (51)
T ss_dssp TCCHHHHHHHHTC----CHHHHHHHHHCSTT
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHhhHHh
Confidence 5899999999999 99999998875433
No 465
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=75.31 E-value=2.7 Score=29.27 Aligned_cols=59 Identities=10% Similarity=0.048 Sum_probs=41.4
Q ss_pred HHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccccccccC
Q 044458 43 LEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKN 116 (241)
Q Consensus 43 fd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~ 116 (241)
.+.|.... +.+.|+++||+.+|+ +++.|.|+++......+-... ..+++....++|...
T Consensus 8 ~~~i~~~~-~~~~~~~~lA~~~~~----s~~~l~r~fk~~~G~s~~~~~----------~~~Rl~~A~~lL~~~ 66 (108)
T 3mn2_A 8 EEYIEANW-MRPITIEKLTALTGI----SSRGIFKAFQRSRGYSPMAFA----------KRVRLQHAHNLLSDG 66 (108)
T ss_dssp HHHHHHHT-TSCCCHHHHHHHHTC----CHHHHHHHHHHHTSSCHHHHH----------HHHHHHHHHHHHHSS
T ss_pred HHHHHHcc-cCCCCHHHHHHHHCC----CHHHHHHHHHHHhCcCHHHHH----------HHHHHHHHHHHHHcC
Confidence 34454432 157999999999999 999999999998887766652 344555544555544
No 466
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=75.24 E-value=2.1 Score=36.57 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=43.9
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAP 108 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 108 (241)
+..|.+.|.+. +.+|.+|||+.+++ ++..++|-|+.|...|++.+.. . ...|.+.+
T Consensus 7 ~~~Il~~L~~~---~~~s~~eLa~~l~v----S~~ti~r~l~~L~~~G~~i~~~----~---g~GY~l~~ 62 (321)
T 1bia_A 7 PLKLIALLANG---EFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFTV----P---GKGYSLPE 62 (321)
T ss_dssp HHHHHHHHTTS---SCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEEE----T---TTEEECSS
T ss_pred HHHHHHHHHcC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCcEEEe----c---CCCcEEee
Confidence 34577788652 68999999999999 9999999999999999987541 2 23577654
No 467
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=75.07 E-value=1.4 Score=31.12 Aligned_cols=66 Identities=20% Similarity=0.186 Sum_probs=44.6
Q ss_pred HHhcChHHHHHhcCCCCCCCHHHHHhh----CCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 37 AIELDLLEVIAKAGPGAFMSPKQIASQ----LPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 37 a~~lglfd~L~~~~~~~~~t~~eLA~~----~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
..++-|...|.. +|.+--+|++. +++ ++..+.++|+.|...|++.....+ .+|-....|++|+.++
T Consensus 9 ~l~~~IL~~L~~----~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~-~~~r~r~~y~LT~~G~ 78 (108)
T 3l7w_A 9 LIEYLILAIVSK----HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQE-HQGRRRKYYHLTDSGE 78 (108)
T ss_dssp HHHHHHHHHHHH----SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEE-ETTEEEEEEEECHHHH
T ss_pred HHHHHHHHHHHc----CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeec-CCCCcceEEEECHHHH
Confidence 345556666766 57777676666 578 999999999999999999865211 1121112478887666
No 468
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=74.98 E-value=1.8 Score=35.86 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=27.1
Q ss_pred CCCeEEEecCCchHHHHHHHHH-------CCC-----CcEEEccc
Q 044458 198 GLQSVVDVGGGIGASLDMIISK-------YPS-----IKGINFDL 230 (241)
Q Consensus 198 ~~~~vvDVGGG~G~~~~~l~~~-------~P~-----l~~~v~Dl 230 (241)
+..+|++||.|+|..+..+++. +|+ ++++.+|.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~ 104 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK 104 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEEC
Confidence 3479999999999999887765 785 57888886
No 469
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=74.96 E-value=1.7 Score=40.43 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=48.6
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhc-----CCccccccccCCCCccccceecCcccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLAS-----YSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~-----~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
-+.-|++.|... +.+|..+|++.+++ ++..+++.|+.|.. .|+++.. .+.|.+++...
T Consensus 431 ~~~~iL~~l~~~---~~it~~~la~~l~~----s~~~~~~~L~~L~~~~~~~~glie~~---------g~~y~L~~~~~ 493 (583)
T 3lmm_A 431 RIAIVLYLLFQR---PFITIDVVARGLQS----GKEAARNALEAARQTTVAGAPLIIAH---------DGVWLLGNACR 493 (583)
T ss_dssp HHHHHHHHHHHS---SSBCHHHHHHHHTS----CHHHHHHHHHHHHTCEETTEESEEEE---------TTEEEECHHHH
T ss_pred hHHHHHHHHHHC---CCcCHHHHHHHhCc----CHHHHHHHHHHHHhhhccccceEEEe---------CCEEEECHHHH
Confidence 345578888875 58999999999999 99999999999999 7899874 46899988654
No 470
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=74.59 E-value=2.9 Score=36.31 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=25.5
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCcEEEccc
Q 044458 199 LQSVVDVGGGIGASLDMIISKYPSIKGINFDL 230 (241)
Q Consensus 199 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 230 (241)
...||+||.|.|.+...|+++..--+.++++.
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~ 90 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEK 90 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEec
Confidence 47899999999999999998744345666665
No 471
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=74.20 E-value=1.5 Score=39.17 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=39.7
Q ss_pred cChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 40 LDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 40 lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
..|+..|.+.+ ++++|..|||+.+++ +...+.|+++.|...|++.+.
T Consensus 407 ~~vl~~l~~~~-~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~ 453 (487)
T 1hsj_A 407 IYILNHILRSE-SNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKK 453 (487)
T ss_dssp HHHHHHHHTCS-CSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCE
T ss_pred HHHHHHHHhCC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeec
Confidence 34667776642 157999999999999 999999999999999999875
No 472
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=73.87 E-value=0.66 Score=38.79 Aligned_cols=60 Identities=10% Similarity=0.140 Sum_probs=0.0
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQL-PTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAP 108 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~-g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 108 (241)
++..|++.|...+.+.+++.++|++++ ++ ++..++..|+.|...|.+-.. .| +++|..|.
T Consensus 208 ~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~----~~~~v~~al~~L~~eG~IYsT----iD---d~h~k~t~ 268 (270)
T 2pi2_A 208 AQNQVLNLIKACPRPEGLNFQDLKNQLKHM----SVSSIKQAVDFLSNEGHIYST----VD---DDHFKSTD 268 (270)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHhcCC----CHHHHHHHHHHHHhCCEEecc----cc---ccceeecc
Confidence 455688888775333689999999999 68 889999999999999999654 23 67887764
No 473
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=73.84 E-value=1.4 Score=38.59 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=29.0
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCcEEEccc
Q 044458 196 FEGLQSVVDVGGGIGASLDMIISKYPSIKGINFDL 230 (241)
Q Consensus 196 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 230 (241)
+....++||+|++.|.+...++++ +.+++.+|.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~ 241 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDN 241 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEh
Confidence 455689999999999999999988 678899996
No 474
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=73.72 E-value=3.1 Score=28.99 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=34.6
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 42 LLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 42 lfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
+.+.|..... .+.|+++||+.+|+ +++.|.|+++......+-..
T Consensus 10 ~~~~i~~~~~-~~~~~~~lA~~~~~----S~~~l~r~fk~~~G~s~~~~ 53 (108)
T 3oou_A 10 VLSYITEHFS-EGMSLKTLGNDFHI----NAVYLGQLFQKEMGEHFTDY 53 (108)
T ss_dssp HHHHHHHHTT-SCCCHHHHHHHHTS----CHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHhc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHCcCHHHH
Confidence 3444544321 47999999999999 99999999999988877665
No 475
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=73.54 E-value=1.5 Score=33.04 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=38.5
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQL-----PTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~-----g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+.-|++.|...+ +++.|++||.+.+ ++ +..-+.|.|+.|...|++.+.
T Consensus 19 R~~Il~~L~~~~-~~h~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 71 (150)
T 2w57_A 19 RLKILEVLQQPE-CQHISAEELYKKLIDLGEEI----GLATVYRVLNQFDDAGIVTRH 71 (150)
T ss_dssp HHHHHHHHTSGG-GSSEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHCCcEEEE
Confidence 344788886531 0489999999998 55 888999999999999999875
No 476
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=73.23 E-value=2.7 Score=28.08 Aligned_cols=46 Identities=13% Similarity=0.223 Sum_probs=36.6
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 42 LLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 42 lfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+.+.+..++ ++.+++.++|+.++++ ..+++..++..|.++|++.+.
T Consensus 19 Fi~l~~~~~-~~~i~l~~aa~~L~v~---~kRRiYDI~NVLe~igli~K~ 64 (76)
T 1cf7_A 19 FVSLLQEAK-DGVLDLKLAADTLAVR---QKRRIYDITNVLEGIGLIEKK 64 (76)
T ss_dssp HHHHHHHSS-TTEEEHHHHHHHTTTC---CTHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHhCC-CCcCcHHHHHHHhCCc---cceehhhHHHHHhHhcceeec
Confidence 445555443 3689999999999972 567999999999999999974
No 477
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=73.13 E-value=3.4 Score=29.08 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=42.0
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccccccc
Q 044458 42 LLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTK 115 (241)
Q Consensus 42 lfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~ 115 (241)
+.+.|.... +.+.|+++||+.+|+ +++.|.|+++......+-... ..+++.....+|..
T Consensus 12 ~~~~i~~~~-~~~~~~~~lA~~~~~----S~~~l~r~fk~~~G~s~~~~~----------~~~Rl~~A~~lL~~ 70 (113)
T 3oio_A 12 AVSLMEANI-EEPLSTDDIAYYVGV----SRRQLERLFKQYLGTVPSKYY----------LELRLNRARQLLQQ 70 (113)
T ss_dssp HHHHHHTCS-SSCCCHHHHHHHHTS----CHHHHHHHHHHHTSSCHHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHhhh-cCCCCHHHHHHHHCc----CHHHHHHHHHHHHCcCHHHHH----------HHHHHHHHHHHHHc
Confidence 345565532 257999999999999 999999999998888766652 34455554455554
No 478
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=72.76 E-value=1.3 Score=31.82 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=44.6
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCC------CCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCcccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLP------TKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCK 111 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g------~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 111 (241)
++-|...|.. +|.+--||++.+. + ++..+.+.|+-|...|++.....+...|-.-..|++|+.++
T Consensus 11 ~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~ 81 (115)
T 4esb_A 11 EGCILYIISQ----EEVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGL 81 (115)
T ss_dssp HHHHHHHHHH----SCEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHH
T ss_pred HHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHH
Confidence 3445566665 5888888888874 6 89999999999999999986421101111123588887766
No 479
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=72.67 E-value=1.8 Score=31.31 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=32.1
Q ss_pred CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 53 AFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 53 ~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
.|.++.|||+.+++ ++..++.+|+.|...|.+...
T Consensus 19 ~p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~i 53 (121)
T 2pjp_A 19 EPWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITAI 53 (121)
T ss_dssp SCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 36799999999999 999999999999999988875
No 480
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=72.14 E-value=0.66 Score=35.39 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=37.4
Q ss_pred HhcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 044458 38 IELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNC 90 (241)
Q Consensus 38 ~~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~ 90 (241)
++..|.+.|... +.+|..+||+.+|+ +...+++-|+.|...|++..
T Consensus 14 l~~~Il~~l~~~---~~ls~~eLa~~lgv----Sr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 14 IDRNILNELQKD---GRISNVELSKRVGL----SPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHHHHHHHC---SSCCTTGGGTSSSC----CTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence 344566666663 67899999999999 88888999999999999873
No 481
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=71.80 E-value=1.3 Score=38.98 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=43.5
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecC
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLA 107 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t 107 (241)
+..|++.|.. +|.++++|++++|+ +...+...|-.|.-.|++... + .++|+++
T Consensus 330 ~~~vl~~l~~----~~~~~D~l~~~~gl----~~~~v~~~L~~LEl~G~v~~~-----~---Gg~~~~~ 382 (382)
T 3maj_A 330 RTRILALLGP----SPVGIDDLIRLSGI----SPAVVRTILLELELAGRLERH-----G---GSLVSLS 382 (382)
T ss_dssp HHHHHHHCCS----SCEEHHHHHHHHCC----CHHHHHHHHHHHHHTTCCEEC-----T---TSEEEC-
T ss_pred HHHHHHhhCC----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEeC-----C---CceEecC
Confidence 3357888865 68999999999999 999999999999999999874 2 4677653
No 482
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=71.59 E-value=1.8 Score=36.07 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHH
Q 044458 186 MKKFLENYKGFEGLQSVVDVGGGIGASLDMIISK 219 (241)
Q Consensus 186 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 219 (241)
...+-+.+ -+....+|||+||+.|.++...++.
T Consensus 62 L~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~ 94 (269)
T 2px2_A 62 LRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATM 94 (269)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTS
T ss_pred HHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhh
Confidence 34555565 3777899999999999999998886
No 483
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=71.07 E-value=1.6 Score=30.78 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=31.8
Q ss_pred CCC-CHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 53 AFM-SPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 53 ~~~-t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+.+ |..+||+.+|+ +...+++-|+.|...|++...
T Consensus 41 ~~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 41 EGLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp EEEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 345 99999999999 999999999999999999864
No 484
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=70.64 E-value=5.6 Score=34.98 Aligned_cols=61 Identities=10% Similarity=0.126 Sum_probs=38.5
Q ss_pred CchHHHHHHHHHHhcchhhHHHHHHhcCCCCCCCeEEEecCCchHHHHHHHHH---C----CCCcEEEccchH
Q 044458 167 DLRLNKIFNNGMFSHSTITMKKFLENYKGFEGLQSVVDVGGGIGASLDMIISK---Y----PSIKGINFDLPH 232 (241)
Q Consensus 167 ~~~~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~---~----P~l~~~v~DlP~ 232 (241)
.|+....|.+....+- .+.|.. .. .+..-.||++|.|+|.++..+++. + ..++..+.|.-+
T Consensus 54 apeis~~FGe~la~~~---~~~w~~-~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp 121 (387)
T 1zkd_A 54 SPEISQMFGELLGLWS---ASVWKA-AD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP 121 (387)
T ss_dssp HHHHCHHHHHHHHHHH---HHHHHH-TT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred CCchHHHHHHHHHHHH---HHHHHH-cC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCH
Confidence 3666666766653322 222222 22 344568999999999999988875 2 345678887743
No 485
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=70.52 E-value=4.4 Score=30.94 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=39.3
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCC---CCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTK---NSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~---~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+.-|++.|...+ ++.|++||-+.+.-. +.++..-+.|-|+.|...|++.+.
T Consensus 35 R~~IL~~L~~~~--~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i 88 (162)
T 4ets_A 35 REVLLKTLYHSD--THYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSI 88 (162)
T ss_dssp HHHHHHHHHSCC--SCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 445888887754 689999998876310 112777899999999999999875
No 486
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=70.42 E-value=4 Score=35.17 Aligned_cols=46 Identities=9% Similarity=0.055 Sum_probs=39.2
Q ss_pred hcChHH-----HHHhcCCCCCCCHHHHHhhC--CCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLE-----VIAKAGPGAFMSPKQIASQL--PTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd-----~L~~~~~~~~~t~~eLA~~~--g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+..|++ +|... +|+++.+||+.+ ++ ++.-+||-|..|...|++.+.
T Consensus 19 ~~~IL~~i~~~yl~~~---~pV~s~~La~~~~l~V----S~aTIRrDL~~LE~~GlL~r~ 71 (338)
T 1stz_A 19 QRKVLYCIVREYIENK---KPVSSQRVLEVSNIEF----SSATIRNDMKKLEYLGYIYQP 71 (338)
T ss_dssp HHHHHHHHHHHHHHHC---SCBCHHHHHHHSCCCS----CHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHHHHHcC---CCccHHHHHHHhCCCC----CHHHHHHHHHHHHHCCCEEEc
Confidence 344566 66663 799999999999 77 999999999999999999985
No 487
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=70.27 E-value=2 Score=31.38 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=32.0
Q ss_pred CCC-CHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 53 AFM-SPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 53 ~~~-t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
..+ |..+||+.+|+ +..-+++-|+.|...|++...
T Consensus 33 ~~lPse~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 33 DQLPSVRETALQEKI----NPNTVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp CEECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 456 99999999999 999999999999999999864
No 488
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=70.20 E-value=2.1 Score=30.54 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=31.7
Q ss_pred CCC-CHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 53 AFM-SPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 53 ~~~-t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
..+ |..+||+.+|+ +..-+++-|+.|...|++...
T Consensus 31 ~~lPs~~~La~~~~v----Sr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 31 EMIPSIRKISTEYQI----NPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp CEECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 345 89999999999 999999999999999999864
No 489
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=70.01 E-value=2.8 Score=30.46 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=31.7
Q ss_pred CCC-CHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 53 AFM-SPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 53 ~~~-t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
..+ |..+||+.+|+ +..-+++-|+.|...|++...
T Consensus 35 ~~Lps~~~La~~~~v----Sr~tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 35 DKLPSVREMGVKLAV----NPNTVSRAYQELERAGYIYAK 70 (125)
T ss_dssp CBCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEe
Confidence 345 79999999999 999999999999999999874
No 490
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=69.29 E-value=4.9 Score=29.04 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=42.6
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccccccccC
Q 044458 42 LLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKN 116 (241)
Q Consensus 42 lfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~ 116 (241)
+.+.|.... ..+.|+++||+.+|+ +++.|.|+++......+-... ..+++.....+|...
T Consensus 16 ~~~~i~~~~-~~~~sl~~lA~~~~~----S~~~l~r~fk~~~G~s~~~~l----------~~~Rl~~A~~lL~~~ 75 (129)
T 1bl0_A 16 ILDWIEDNL-ESPLSLEKVSERSGY----SKWHLQRMFKKETGHSLGQYI----------RSRKMTEIAQKLKES 75 (129)
T ss_dssp HHHHHHTTT-TSCCCCHHHHHHSSS----CHHHHHHHHHHHHSSCHHHHH----------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHcc-CCCCCHHHHHHHHCc----CHHHHHHHHHHHHCcCHHHHH----------HHHHHHHHHHHHHcC
Confidence 445555432 157999999999999 999999999998888776652 344555555555533
No 491
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=69.23 E-value=2.3 Score=35.04 Aligned_cols=66 Identities=15% Similarity=0.067 Sum_probs=46.0
Q ss_pred cChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecCccccc
Q 044458 40 LDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKF 112 (241)
Q Consensus 40 lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~ 112 (241)
..+...|-+.+ +++.|..|||+.+++ ++..+.++++-|...|++.+...+ .|. ..-...+|+.++.
T Consensus 37 ~~vL~~L~~~~-~~~~~~~el~~~l~~----~~~t~t~~l~rLe~~G~i~R~~~~-~Dr-R~~~i~LT~~G~~ 102 (250)
T 1p4x_A 37 FILLTYLFHQQ-ENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRSK-IDE-RNTYISISEEQRE 102 (250)
T ss_dssp HHHHHHHHSCS-CSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEECS-SST-TSEEEECCHHHHH
T ss_pred HHHHHHHHhcC-CCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCC-CCC-CeEEEEECHHHHH
Confidence 34566665532 147999999999999 999999999999999999875321 220 0124456666553
No 492
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=69.18 E-value=2.6 Score=31.55 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=38.1
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCC-CCCCcchHHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTK-NSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~-~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+.-|++.|... ++.|++||.+.+.-. +.++..-+.|.|+.|...|++.+.
T Consensus 21 R~~Il~~l~~~---~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i 71 (145)
T 3eyy_A 21 RQLVLEAVDTL---EHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHA 71 (145)
T ss_dssp HHHHHHHHHHH---SSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEE
Confidence 44577788765 378999998887321 122788899999999999999875
No 493
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=69.05 E-value=3.9 Score=25.10 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=23.9
Q ss_pred cChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHH
Q 044458 40 LDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRL 81 (241)
Q Consensus 40 lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~ 81 (241)
..|+..+.. +.|..|||+.+|+ ++..++..++.
T Consensus 4 ~~vl~l~~~-----g~s~~eIA~~l~i----s~~tV~~~~~~ 36 (61)
T 2jpc_A 4 RQVLKLIDE-----GYTNHGISEKLHI----SIKTVETHRMN 36 (61)
T ss_dssp HHHHHHHHT-----SCCSHHHHHHTCS----CHHHHHHHHHH
T ss_pred HHHHHHHHc-----CCCHHHHHHHhCC----CHHHHHHHHHH
Confidence 345666543 6899999999999 88776655443
No 494
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=68.81 E-value=3.1 Score=32.52 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=31.8
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 54 FMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 54 ~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++|-++||..+|+ .+..+.|+|..|...|++...
T Consensus 178 ~~t~~~lA~~lg~----sr~tvsR~l~~l~~~g~I~~~ 211 (227)
T 3dkw_A 178 PVAKQLVAGHLSI----QPETFSRIMHRLGDEGIIHLD 211 (227)
T ss_dssp CSCTHHHHHHTTS----CHHHHHHHHHHHHHHTSEEES
T ss_pred cCCHHHHHHHhCC----CHHHHHHHHHHHHHCCcEEec
Confidence 5788999999999 999999999999999999863
No 495
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=68.54 E-value=3.5 Score=26.98 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=38.7
Q ss_pred hcChHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcch-HHHHHHHHhcCCccccc
Q 044458 39 ELDLLEVIAKAGPGAFMSPKQIASQLPTKNSDAHIL-LDRILRLLASYSVLNCS 91 (241)
Q Consensus 39 ~lglfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~-l~rlLr~L~~~g~l~~~ 91 (241)
|-.|++.|..+ ||.++-.||+.+|+ .-.. +.+-|..|...|+++.+
T Consensus 12 ee~I~~fL~~~---Gp~~AL~IAK~LGl----ktAK~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKDN---GPQRALVIAQALGM----RTAKDVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHHH---CSEEHHHHHHHTTC----CSGGGTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHc---CCchHHHHHHHhCc----chhhhcCHHHHHHHHccCcCCC
Confidence 45688889886 69999999999999 5544 89999999999999653
No 496
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=68.36 E-value=2.8 Score=32.64 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=32.1
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 54 FMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 54 ~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
+.|-++||+.+|+ .+..+.|+|+.|...|++...
T Consensus 169 ~~t~~~lA~~lg~----sr~tvsR~l~~L~~~g~I~~~ 202 (220)
T 3dv8_A 169 KITHETIANHLGS----HREVITRMLRYFQVEGLVKLS 202 (220)
T ss_dssp CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeC
Confidence 7899999999999 999999999999999999863
No 497
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=68.24 E-value=3.5 Score=32.40 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=32.0
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 54 FMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 54 ~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++|-++||+.+|+ .+..+.|+|+.|...|++...
T Consensus 180 ~~t~~~lA~~lg~----sr~tvsR~l~~l~~~g~I~~~ 213 (232)
T 2gau_A 180 YLSREELATLSNM----TVSNAIRTLSTFVSERMLALD 213 (232)
T ss_dssp CCCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeeC
Confidence 6899999999999 999999999999999999863
No 498
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=67.52 E-value=3.1 Score=32.68 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=32.0
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 54 FMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 54 ~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++|-++||..+|+ .+..+.|+|+.|...|++...
T Consensus 175 ~~t~~~iA~~lg~----sr~tvsR~l~~L~~~g~I~~~ 208 (231)
T 3e97_A 175 PLGTQDIMARTSS----SRETVSRVLKRLEAHNILEVS 208 (231)
T ss_dssp CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCcEEec
Confidence 6899999999999 999999999999999999863
No 499
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=67.49 E-value=6.1 Score=28.05 Aligned_cols=42 Identities=26% Similarity=0.145 Sum_probs=31.2
Q ss_pred hHHHHHhcCCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccc
Q 044458 42 LLEVIAKAGPGAFMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLN 89 (241)
Q Consensus 42 lfd~L~~~~~~~~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~ 89 (241)
+.+.|..... .+.|+++||+.+|+ +++.|.|+++.- ...+-.
T Consensus 12 ~~~~i~~~~~-~~~~~~~lA~~~~~----S~~~l~r~fk~~-G~s~~~ 53 (120)
T 3mkl_A 12 VCTVINNNIA-HEWTLARIASELLM----SPSLLKKKLREE-ETSYSQ 53 (120)
T ss_dssp HHHHHHTSTT-SCCCHHHHHHHTTC----CHHHHHHHHHHT-TCCHHH
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHCc----CHHHHHHHHHHc-CCCHHH
Confidence 4455555432 57999999999999 999999999874 554443
No 500
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=67.37 E-value=3.5 Score=32.95 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=32.0
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 044458 54 FMSPKQIASQLPTKNSDAHILLDRILRLLASYSVLNCS 91 (241)
Q Consensus 54 ~~t~~eLA~~~g~~~~~~~~~l~rlLr~L~~~g~l~~~ 91 (241)
++|-++||+.+|+ .+..+.|+|+.|...|++...
T Consensus 193 ~lt~~~lA~~lG~----sr~tvsR~l~~L~~~GlI~~~ 226 (243)
T 3la7_A 193 KLSHQAIAEAIGS----TRVTVTRLLGDLREKKMISIH 226 (243)
T ss_dssp CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHCC----cHHHHHHHHHHHHHCCCEEEc
Confidence 6899999999999 999999999999999999864
Done!