BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044462
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 295 bits (755), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 140/283 (49%), Positives = 190/283 (67%), Gaps = 1/283 (0%)
Query: 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
WW+ TG EKL FARDR+VE +FW G I Q R M VN L+T IDD+YDVYGT
Sbjct: 245 WWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGT 304
Query: 61 LDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA 120
L+ELE FTD + RWD + +QLP YM+LCF AL N V++ + ++++ V +IPYL+++
Sbjct: 305 LEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVN-VIPYLRQS 363
Query: 121 WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQ 180
W D Y+VEA+W+ G+ P+L+EY+EN+W S++ P ML H + + TKE ++ L
Sbjct: 364 WVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLY 423
Query: 181 DSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAET 240
D++R SS ++RL DDLGTS +E+ RGDVPKS+QCYM + SE EAR+H++ LIAE
Sbjct: 424 KYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEV 483
Query: 241 WMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQ 283
W KMN+ R FIG A++L RM+Q MY GDGHG Q
Sbjct: 484 WKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQ 526
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 293 bits (749), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/299 (48%), Positives = 189/299 (63%), Gaps = 3/299 (1%)
Query: 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
WW++ GL KL+FARDR++E+F+W VG FEPQ+ CR A + +T IDD+YDVYGT
Sbjct: 254 WWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGT 313
Query: 61 LDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA 120
LDELELFTDAVERWD A LP YMKLCF ALYN++NE+ + L+D+ I+PYL KA
Sbjct: 314 LDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGEN-ILPYLTKA 372
Query: 121 WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQ 180
WAD C ++L EAKW + PT +Y NAW S + P+ L+ AY I KE +E LQ
Sbjct: 373 WADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQ 432
Query: 181 DSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAET 240
DII S I RL +DL ++S E+ RG+ S+ CYM +SE+ A E + +LI ET
Sbjct: 433 KYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLIDET 492
Query: 241 WMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGH-GVQENTKDRVLSLFIDPI 298
W KMN + G + F+ A+NL R S C Y GD H E T+ RVLS+ +PI
Sbjct: 493 WKKMNKEKLGGSLF-AKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPI 550
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 286 bits (732), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 196/292 (67%), Gaps = 4/292 (1%)
Query: 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
WW TGL +L F RDR+VE ++WT G + Q GY R M +N L+T+IDDV+D+YGT
Sbjct: 272 WWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGT 331
Query: 61 LDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA 120
L+EL+LFT A++RWD + +QLP YM++C+ AL+N VNEM + LRD+ PYL+K
Sbjct: 332 LEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDST-PYLRKV 390
Query: 121 WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQ 180
W +SYL+EAKWY G+ P+L+EYM+N+WIS+ +L H + + I +EA E +
Sbjct: 391 WVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMH 450
Query: 181 DSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAET 240
DI+R S I+RL DD+GTS DE++RGDVPKS+QCYM+E SE+EAREH+R LI +T
Sbjct: 451 KYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQT 510
Query: 241 WMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLY-GDGHGVQENTKDRVL 291
W MN + F+ ++ NL RM+Q +Y + DG G+Q + +++L
Sbjct: 511 WKMMNKEMMTSS--FSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKML 560
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 270 bits (690), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 141/300 (47%), Positives = 196/300 (65%), Gaps = 6/300 (2%)
Query: 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEP-QFGYCRRMSAMVNCLLTSIDDVYDVYG 59
WW + EKL F RDR+VE+FFW VG +FEP Q GY R+M+A + L T IDD+YDVYG
Sbjct: 251 WWSRLCFPEKLPFVRDRLVESFFWAVG-MFEPHQHGYQRKMAATIIVLATVIDDIYDVYG 309
Query: 60 TLDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKK 119
TLDELELFTD +RWD + +LPYYM+LC+ ++N +++ + L++ + YL+K
Sbjct: 310 TLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGF-FCLQYLRK 368
Query: 120 AWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEA-LEF 178
+ D ++Y EAKWY+SGY P+L EY+ A ISV +P ++ Y AN A ++
Sbjct: 369 SVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDS 428
Query: 179 LQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIA 238
L DI+ ++ +I+RL DDLGTS EL RGDVPK+IQCYM ET SE+EA EH++ LI
Sbjct: 429 LYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIR 488
Query: 239 ETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQEN-TKDRVLSLFIDP 297
E W MN+A P+ PD + A N+ R++Q +YL+GDG GVQ + T + + L +P
Sbjct: 489 EAWKDMNTAIAAGYPF-PDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEP 547
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 191 bits (484), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 172/305 (56%), Gaps = 10/305 (3%)
Query: 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
W++ +GL FAR+R +E +F +EPQ+ CR + V CL T +DD+YD YGT
Sbjct: 516 WFRDSGL-PLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGT 574
Query: 61 LDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA 120
LDEL+LFT+AV RWD + TE LP YMKLC+ Y+ V+E+ + A ++Q + + + +K
Sbjct: 575 LDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGREL-VSFFRKG 633
Query: 121 WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFT-ANPITKEALEFL 179
W D Y EA+W + Y+PTL EY++N S+ ++LL +++EALE +
Sbjct: 634 WEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKV 693
Query: 180 QDSPD---IIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHE-TRVSEDEAREHIRD 235
D P + ++S+I RL DD T E RG++ SI+CYM + +E+EA +HI
Sbjct: 694 -DYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYS 752
Query: 236 LIAETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQE-NTKDRVLSLF 294
++ E +K + F P +P M R++ ++ GDG GV + KD +
Sbjct: 753 IL-EPAVKELTREFLKPDDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECL 811
Query: 295 IDPIP 299
I+P+P
Sbjct: 812 IEPLP 816
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 168/301 (55%), Gaps = 7/301 (2%)
Query: 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
WWK +G + LNF R+RV E +F IFEP+F CR + + +DD+YD +G+
Sbjct: 488 WWKSSGFTD-LNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGS 546
Query: 61 LDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA 120
LD+L+LFT++V+RWD + +Q+P MK+CF YN+ N++ R+++ ++ Y++
Sbjct: 547 LDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIAKEG-RERQGRDVLGYIQNV 605
Query: 121 WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQ 180
W Q ++Y EA+W + Y+P+ EY+ENA +S+ ++L + FT +T E L +
Sbjct: 606 WKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKID 665
Query: 181 DSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHE-TRVSEDEAREHIRDLIAE 239
+++ + RL +D T E +G+V +IQCYM + ++SE+EA +H+ ++
Sbjct: 666 RESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMEN 725
Query: 240 TWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQEN--TKDRVLSLFIDP 297
++N N +PD++ + R+ Q Y+ GDG + + K+ V + P
Sbjct: 726 ALEELNREFVNNK--IPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQP 783
Query: 298 I 298
+
Sbjct: 784 V 784
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 177 bits (449), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 156/300 (52%), Gaps = 5/300 (1%)
Query: 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
WWK KL +ARDRVVE +FW G FEPQ+ R+M V + + +DD YD Y T
Sbjct: 256 WWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYAT 315
Query: 61 LDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEM-GFIALRDQEVGMIIPYLKK 119
+EL +T+A+ERWD +++P YMK + AL + EM +A ++ + Y K
Sbjct: 316 YEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYR--VEYAKN 373
Query: 120 AWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFL 179
A +SYLVEAKW Y P+ +E+ NA + ++ + ++ + +T E ++
Sbjct: 374 AMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWA 433
Query: 180 QDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAE 239
P II+ S++I R DD+ + +R D +I+CYM E V+ EA + +
Sbjct: 434 ASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVES 493
Query: 240 TWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHG-VQENTKDRVLSLFIDPI 298
W +N F P +P + ++NL R+ +Y GDG+ V + K + SL I+PI
Sbjct: 494 AWKDLNQ-EFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPI 552
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 154/303 (50%), Gaps = 11/303 (3%)
Query: 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
WWK L +ARDRVVE +FWT+G FEPQ+ R M +++ +DD +D YGT
Sbjct: 252 WWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 311
Query: 61 LDELELFTDAVERWDATATEQLPYYMKLCFHA---LYNSVNEMGFIALRDQEVGMIIPYL 117
+ ELE +TDA++RWD ++LP YMK+ + A LY + A R V I +
Sbjct: 312 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 371
Query: 118 KKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALE 177
K+ ++Y VE+ W+ GY P + EY+ NA + T ++ +Y T++ E
Sbjct: 372 KEI----VRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSY-LGMKSATEQDFE 426
Query: 178 FLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLI 237
+L +P I+ S +I R+ DD T E RG + I+C M + +S EA +++
Sbjct: 427 WLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMA 486
Query: 238 AETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYG-DGHGVQENT-KDRVLSLFI 295
W +N P + F+ +NL R+ + Y++ DG+ E K +++L +
Sbjct: 487 ETAWKDINEGLLRPTPVSTE-FLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLV 545
Query: 296 DPI 298
D I
Sbjct: 546 DSI 548
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 157 bits (398), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 152/303 (50%), Gaps = 11/303 (3%)
Query: 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
WWK L +ARDRVVE +FW +G FEPQ+ R M +++ +DD +D YGT
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 61 LDELELFTDAVERWDATATEQLPYYMKLCFHA---LYNSVNEMGFIALRDQEVGMIIPYL 117
+ ELE +TDA++RWD ++LP YMK+ + A LY + A R V I +
Sbjct: 310 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 369
Query: 118 KKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALE 177
K+ ++Y VE+ W+ GY P + EY+ NA + T + +Y T++ E
Sbjct: 370 KEV----VRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQDFE 424
Query: 178 FLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLI 237
+L +P I+ S +I R+ DD T E RG + I+C M + +S EA +++
Sbjct: 425 WLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMA 484
Query: 238 AETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYG-DGHGVQENT-KDRVLSLFI 295
W +N P + F+ +NL R+ + Y++ DG+ E K +++L +
Sbjct: 485 ETAWKDINEGLLRPTPVSTE-FLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLV 543
Query: 296 DPI 298
D I
Sbjct: 544 DSI 546
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 157 bits (397), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 152/303 (50%), Gaps = 11/303 (3%)
Query: 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
WWK L +ARDRVVE +FW +G FEPQ+ R M +++ +DD +D YGT
Sbjct: 252 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 311
Query: 61 LDELELFTDAVERWDATATEQLPYYMKLCFHA---LYNSVNEMGFIALRDQEVGMIIPYL 117
+ ELE +TDA++RWD ++LP YMK+ + A LY + A R V I +
Sbjct: 312 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 371
Query: 118 KKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALE 177
K+ ++Y VE+ W+ GY P + EY+ NA + T + +Y T++ E
Sbjct: 372 KEV----VRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQDFE 426
Query: 178 FLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLI 237
+L +P I+ S +I R+ DD T E RG + I+C M + +S EA +++
Sbjct: 427 WLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMA 486
Query: 238 AETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYG-DGHGVQENT-KDRVLSLFI 295
W +N P + F+ +NL R+ + Y++ DG+ E K +++L +
Sbjct: 487 ETAWKDINEGLLRPTPVSTE-FLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLV 545
Query: 296 DPI 298
D I
Sbjct: 546 DSI 548
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 157 bits (397), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 152/303 (50%), Gaps = 11/303 (3%)
Query: 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
WWK L +ARDRVVE +FW +G FEPQ+ R M +++ +DD +D YGT
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 61 LDELELFTDAVERWDATATEQLPYYMKLCFHA---LYNSVNEMGFIALRDQEVGMIIPYL 117
+ ELE +TDA++RWD ++LP YMK+ + A LY + A R V I +
Sbjct: 310 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 369
Query: 118 KKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALE 177
K+ ++Y VE+ W+ GY P + EY+ NA + T + +Y T++ E
Sbjct: 370 KEV----VRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQDFE 424
Query: 178 FLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLI 237
+L +P I+ S +I R+ DD T E RG + I+C M + +S EA +++
Sbjct: 425 WLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMA 484
Query: 238 AETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYG-DGHGVQENT-KDRVLSLFI 295
W +N P + F+ +NL R+ + Y++ DG+ E K +++L +
Sbjct: 485 ETAWKDINEGLLRPTPVSTE-FLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLV 543
Query: 296 DPI 298
D I
Sbjct: 544 DSI 546
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 157 bits (397), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 152/303 (50%), Gaps = 11/303 (3%)
Query: 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
WWK L +ARDRVVE +FW +G FEPQ+ R M +++ +DD +D YGT
Sbjct: 237 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 296
Query: 61 LDELELFTDAVERWDATATEQLPYYMKLCFHA---LYNSVNEMGFIALRDQEVGMIIPYL 117
+ ELE +TDA++RWD ++LP YMK+ + A LY + A R V I +
Sbjct: 297 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 356
Query: 118 KKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALE 177
K+ ++Y VE+ W+ GY P + EY+ NA + T + +Y T++ E
Sbjct: 357 KEV----VRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQDFE 411
Query: 178 FLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLI 237
+L +P I+ S +I R+ DD T E RG + I+C M + +S EA +++
Sbjct: 412 WLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMA 471
Query: 238 AETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYG-DGHGVQENT-KDRVLSLFI 295
W +N P + F+ +NL R+ + Y++ DG+ E K +++L +
Sbjct: 472 ETAWKDINEGLLRPTPVSTE-FLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLV 530
Query: 296 DPI 298
D I
Sbjct: 531 DSI 533
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 157 bits (397), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 152/303 (50%), Gaps = 11/303 (3%)
Query: 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
WWK L +ARDRVVE +FW +G FEPQ+ R M +++ +DD +D YGT
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 61 LDELELFTDAVERWDATATEQLPYYMKLCFHA---LYNSVNEMGFIALRDQEVGMIIPYL 117
+ ELE +TDA++RWD ++LP YMK+ + A LY + A R V I +
Sbjct: 310 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 369
Query: 118 KKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALE 177
K+ ++Y VE+ W+ GY P + EY+ NA + T + +Y T++ E
Sbjct: 370 KEV----VRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQDFE 424
Query: 178 FLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLI 237
+L +P I+ S +I R+ DD T E RG + I+C M + +S EA +++
Sbjct: 425 WLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMA 484
Query: 238 AETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYG-DGHGVQENT-KDRVLSLFI 295
W +N P + F+ +NL R+ + Y++ DG+ E K +++L +
Sbjct: 485 ETAWKDINEGLLRPTPVSTE-FLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLV 543
Query: 296 DPI 298
D I
Sbjct: 544 DSI 546
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 152/303 (50%), Gaps = 11/303 (3%)
Query: 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
WWK L +ARDRVVE +FW +G FEPQ+ R M +++ +DD +D YGT
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 61 LDELELFTDAVERWDATATEQLPYYMKLCFHA---LYNSVNEMGFIALRDQEVGMIIPYL 117
+ ELE +TDA++RWD ++LP YMK+ + A LY + A R V I +
Sbjct: 310 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 369
Query: 118 KKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALE 177
K+ ++Y VE+ W+ GY P + EY+ NA + T + +Y T++ E
Sbjct: 370 KEV----VRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQDFE 424
Query: 178 FLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLI 237
+L +P I+ S +I R+ DD T E RG + I+C M + +S EA +++
Sbjct: 425 WLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMA 484
Query: 238 AETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYG-DGHGVQENT-KDRVLSLFI 295
W +N P + F+ +NL R+ + Y++ DG+ E K +++L +
Sbjct: 485 ETAWKDINEGLLRPTPVSTE-FLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLV 543
Query: 296 DPI 298
D I
Sbjct: 544 DSI 546
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 151/303 (49%), Gaps = 11/303 (3%)
Query: 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
WWK L +ARDRVVE +F +G FEPQ+ R M +++ +DD +D YGT
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 61 LDELELFTDAVERWDATATEQLPYYMKLCFHA---LYNSVNEMGFIALRDQEVGMIIPYL 117
+ ELE +TDA++RWD ++LP YMK+ + A LY + A R V I +
Sbjct: 310 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 369
Query: 118 KKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALE 177
K+ ++Y VE+ W+ GY P + EY+ NA + T + +Y T++ E
Sbjct: 370 KEV----VRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQDFE 424
Query: 178 FLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLI 237
+L +P I+ S +I R+ DD T E RG + I+C M + +S EA +++
Sbjct: 425 WLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMA 484
Query: 238 AETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYG-DGHGVQENT-KDRVLSLFI 295
W +N P + F+ +NL R+ + Y++ DG+ E K +++L +
Sbjct: 485 ETAWKDINEGLLRPTPVSTE-FLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLV 543
Query: 296 DPI 298
D I
Sbjct: 544 DSI 546
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 151/303 (49%), Gaps = 11/303 (3%)
Query: 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
WWK L +ARDRVVE +F +G FEPQ+ R M +++ +DD +D YGT
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 61 LDELELFTDAVERWDATATEQLPYYMKLCFHA---LYNSVNEMGFIALRDQEVGMIIPYL 117
+ ELE +TDA++RWD ++LP YMK+ + A LY + A R V I +
Sbjct: 310 VKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 369
Query: 118 KKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALE 177
K+ ++Y VE+ W+ GY P + EY+ NA + T + +Y T++ E
Sbjct: 370 KEV----VRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQDFE 424
Query: 178 FLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLI 237
+L +P I+ S +I R+ DD T E RG + I+C M + +S EA +++
Sbjct: 425 WLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMA 484
Query: 238 AETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYG-DGHGVQENT-KDRVLSLFI 295
W +N P + F+ +NL R+ + Y++ DG+ E K +++L +
Sbjct: 485 ETAWKDINEGLLRPTPVSTE-FLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLV 543
Query: 296 DPI 298
D I
Sbjct: 544 DSI 546
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 144 bits (362), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 147/300 (49%), Gaps = 6/300 (2%)
Query: 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGT 60
WWK++G+ + +NF R RV E +F + FEP++ R + CL DD+ D++ T
Sbjct: 459 WWKESGMAD-INFTRHRVAEVYFSSA--TFEPEYSATRIAFTKIGCLQVLFDDMADIFAT 515
Query: 61 LDELELFTDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKA 120
LDEL+ FT+ V+RWD + ++P M+ CF + + E+ ++ Q M + +++K
Sbjct: 516 LDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDM-LAHIRKP 574
Query: 121 WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQ 180
W Y+ E +W +GYIPT +EY++ ISV L + + +E +
Sbjct: 575 WELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVH 634
Query: 181 DSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHET-RVSEDEAREHIRDLIAE 239
++ + S+ RL +D T E RG I CYM + +E++A +HI ++
Sbjct: 635 YPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDR 694
Query: 240 TWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGV-QENTKDRVLSLFIDPI 298
+ + F +P NL Q Y + DG+G+ E KD + ++IDPI
Sbjct: 695 ALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPI 754
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 9 EKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELE-LF 67
+KL FA + + T +I E ++ + LL D++ + T+ +L+ L
Sbjct: 2478 DKLTFALQLTIISVKGTSNEIEESEWDF----------LLKGGDNLTSIKETIPQLDSLL 2527
Query: 68 TDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIP 115
+ ++W +Q+P + KL H NS + F +DQ IIP
Sbjct: 2528 STTQQKWLICLRQQVPSFSKLVDHIQQNSSDWKQFFG-KDQVGEPIIP 2574
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 9 EKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELE-LF 67
+KL FA + + T +I E ++ + LL D++ + T+ +L+ L
Sbjct: 2600 DKLTFALQLTIISVKGTSNEIEESEWDF----------LLKGGDNLTSIKETIPQLDSLL 2649
Query: 68 TDAVERWDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIP 115
+ ++W +Q+P + KL H NS + F +DQ IIP
Sbjct: 2650 STTQQKWLICLRQQVPSFSKLVDHIQQNSSDWKQFFG-KDQVGEPIIP 2696
>pdb|2V8Z|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V8Z|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V8Z|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V8Z|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
Length = 343
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 143 LQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQDS-PDIIRISSMI 192
L Y E SVT PVML + A T +T ++ L DS +II I I
Sbjct: 145 LIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIKDTI 195
>pdb|3NEV|A Chain A, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|B Chain B, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|C Chain C, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|D Chain D, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
Length = 298
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 143 LQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQDS-PDIIRISSMI 192
L Y E SVT PVML + A T +T ++ L DS +II I I
Sbjct: 116 LIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIKDTI 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,037,056
Number of Sequences: 62578
Number of extensions: 358980
Number of successful extensions: 882
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 22
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)