Query 044462
Match_columns 299
No_of_seqs 167 out of 844
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 05:30:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 1.2E-87 4E-92 646.8 21.1 297 1-299 256-553 (554)
2 3n0f_A Isoprene synthase; terp 100.0 1.9E-87 6.6E-92 646.2 22.0 297 1-299 254-551 (555)
3 3m00_A Aristolochene synthase; 100.0 1.8E-86 6.2E-91 638.1 21.5 296 1-299 252-549 (550)
4 2ong_A 4S-limonene synthase; m 100.0 9.7E-83 3.3E-87 616.9 23.7 297 1-299 245-543 (543)
5 3sdr_A Alpha-bisabolene syntha 100.0 2.6E-82 8.8E-87 634.2 24.4 296 1-299 516-816 (817)
6 1n1b_A (+)-bornyl diphosphate 100.0 1.6E-82 5.4E-87 615.1 21.7 297 1-299 251-549 (549)
7 3s9v_A Abietadiene synthase, c 100.0 6.6E-82 2.2E-86 629.1 23.4 295 1-299 488-785 (785)
8 2j5c_A 1,8-cineole synthase; t 100.0 2.5E-82 8.6E-87 615.4 19.9 296 1-299 272-569 (569)
9 3p5p_A Taxadiene synthase; cla 100.0 1.3E-81 4.4E-86 625.4 24.5 294 1-299 459-755 (764)
10 1ps1_A Pentalenene synthase; a 100.0 1.4E-52 4.7E-57 386.1 14.1 239 1-249 29-271 (337)
11 1di1_A Aristolochene synthase; 100.0 2.7E-50 9.2E-55 365.0 13.8 231 1-248 25-264 (300)
12 3pya_A ENT-copalyl diphosphate 100.0 1.5E-49 5.1E-54 391.7 12.0 241 1-298 463-719 (727)
13 3bny_A Aristolochene synthase; 100.0 8.7E-49 3E-53 358.3 13.4 231 1-248 39-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 2.7E-48 9.2E-53 363.2 13.1 239 1-247 69-311 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 4.8E-36 1.6E-40 282.8 13.0 239 1-249 138-391 (433)
16 1yyq_A Trichodiene synthase; t 99.8 8.5E-21 2.9E-25 175.5 12.0 227 14-268 62-293 (374)
17 3lmd_A Geranylgeranyl pyrophos 93.3 0.96 3.3E-05 41.1 12.0 103 113-222 161-275 (360)
18 3ipi_A Geranyltranstransferase 92.3 0.94 3.2E-05 39.9 10.3 143 113-270 128-279 (295)
19 3rmg_A Octaprenyl-diphosphate 89.9 7.2 0.00025 34.8 13.8 86 113-203 134-220 (334)
20 3m0g_A Farnesyl diphosphate sy 89.9 3 0.0001 36.7 11.1 118 114-246 137-269 (297)
21 3acx_A Dehydrosqualene synthas 89.0 11 0.00037 32.8 16.0 197 36-262 38-246 (293)
22 3mzv_A Decaprenyl diphosphate 88.5 13 0.00044 33.2 14.4 104 113-222 140-255 (341)
23 3oyr_A Trans-isoprenyl diphosp 88.0 12 0.00041 33.6 13.8 87 113-204 152-239 (345)
24 3lsn_A Geranyltranstransferase 87.0 5.8 0.0002 35.0 11.0 133 124-280 154-299 (304)
25 4hd1_A Squalene synthase HPNC; 86.5 16 0.00053 31.8 16.4 155 37-228 40-199 (294)
26 3ts7_A Geranyltranstransferase 85.9 7.8 0.00027 34.4 11.3 112 122-246 158-282 (324)
27 3p8l_A Geranyltranstransferase 84.4 8.2 0.00028 33.9 10.6 111 122-246 156-279 (302)
28 2ftz_A Geranyltranstransferase 84.2 9 0.00031 33.4 10.7 120 113-246 135-264 (284)
29 1rtr_A Geranyltranstransferase 83.8 5.6 0.00019 35.0 9.3 111 122-246 148-271 (301)
30 3p8r_A Geranyltranstransferase 83.3 5.3 0.00018 35.2 8.9 112 122-246 158-282 (302)
31 1wy0_A Geranylgeranyl pyrophos 82.0 14 0.00047 33.0 11.3 103 113-222 138-253 (342)
32 2h8o_A Geranyltranstransferase 81.7 9.6 0.00033 34.0 10.1 111 122-246 192-315 (335)
33 3lom_A Geranyltranstransferase 80.6 15 0.0005 32.5 10.8 114 122-246 158-283 (313)
34 4f62_A Geranyltranstransferase 80.5 11 0.00037 33.4 9.9 111 123-246 152-275 (317)
35 3npk_A Geranyltranstransferase 80.1 20 0.00068 31.3 11.4 133 115-268 136-280 (291)
36 3pko_A Geranylgeranyl pyrophos 80.0 27 0.00092 31.0 12.5 103 113-222 144-259 (334)
37 3pde_A Farnesyl-diphosphate sy 77.7 16 0.00055 32.2 10.1 111 123-246 156-278 (309)
38 4dhd_A Polyprenyl synthetase; 76.4 17 0.00058 32.7 10.1 106 113-222 133-261 (358)
39 3uca_A Geranyltranstransferase 75.8 18 0.00061 32.1 9.9 112 122-246 180-304 (324)
40 3apz_A Geranyl diphosphate syn 71.4 22 0.00076 31.7 9.6 86 113-203 154-240 (348)
41 3llw_A Geranyltranstransferase 70.9 18 0.00063 31.8 8.7 114 121-246 158-281 (311)
42 3nf2_A Putative polyprenyl syn 67.4 28 0.00096 31.2 9.3 86 113-203 144-230 (352)
43 2j1p_A Geranylgeranyl pyrophos 67.3 8.3 0.00029 33.7 5.7 109 123-246 161-272 (293)
44 1rqj_A Geranyltranstransferase 67.2 29 0.00099 30.2 9.2 112 122-246 152-276 (299)
45 1wmw_A Geranylgeranyl diphosph 66.0 30 0.001 30.5 9.2 102 113-222 131-246 (330)
46 2her_A Fragment, farnesyl pyro 56.5 64 0.0022 29.1 9.6 104 113-222 169-284 (368)
47 3kra_B Geranyl diphosphate syn 55.5 25 0.00086 30.3 6.5 70 124-199 151-221 (274)
48 3tc1_A Octaprenyl pyrophosphat 55.3 1.1E+02 0.0037 26.8 12.6 100 113-222 123-235 (315)
49 1yhl_A Farnesyl pyrophosphate 51.6 62 0.0021 28.9 8.7 106 113-223 152-285 (362)
50 2q80_A Geranylgeranyl pyrophos 51.5 1.1E+02 0.0037 26.6 10.0 83 113-203 112-195 (301)
51 2e8v_A Geranylgeranyl pyrophos 46.7 67 0.0023 28.4 8.1 86 113-203 132-220 (340)
52 3aqb_B Component B of hexapren 45.9 91 0.0031 27.3 8.8 87 113-203 131-217 (325)
53 3fau_A NEDD4-binding protein 2 45.0 20 0.00068 24.6 3.4 23 222-244 6-28 (82)
54 2azj_A Geranylgeranyl pyrophos 42.3 74 0.0025 27.5 7.5 117 113-246 136-258 (289)
55 2qis_A Farnesyl pyrophosphate 35.4 1.4E+02 0.0048 26.7 8.4 87 113-203 177-270 (374)
56 1uby_A FPS, farnesyl diphospha 33.4 1.6E+02 0.0054 26.3 8.4 87 113-203 170-263 (367)
57 2zqe_A MUTS2 protein; alpha/be 33.2 38 0.0013 23.4 3.3 27 222-248 10-36 (83)
58 2q58_A Fragment, farnesyl pyro 31.4 36 0.0012 30.6 3.7 88 113-203 169-260 (368)
59 1tr8_A Conserved protein (MTH1 30.1 29 0.001 25.2 2.3 24 212-235 66-89 (102)
60 2d9i_A NEDD4-binding protein 2 29.9 43 0.0015 23.6 3.3 21 222-242 14-34 (96)
61 1v4e_A Octoprenyl-diphosphate 29.4 1E+02 0.0034 26.7 6.2 81 113-203 128-210 (299)
62 1d0q_A DNA primase; zinc-bindi 26.8 39 0.0013 24.3 2.6 28 209-236 65-92 (103)
63 3vj8_A Squalene synthase; farn 25.4 3.4E+02 0.012 23.8 15.6 172 37-227 38-217 (343)
64 3lk5_A Geranylgeranyl pyrophos 24.9 2.6E+02 0.0088 25.1 8.2 80 119-203 182-263 (380)
65 3ic3_A Putative pyruvate dehyd 23.0 1.1E+02 0.0037 22.1 4.2 28 213-240 59-86 (101)
66 3qd7_X Uncharacterized protein 21.6 78 0.0027 24.1 3.5 42 206-249 39-80 (137)
67 4akk_A Nitrate regulatory prot 20.7 55 0.0019 29.9 2.8 48 191-238 349-397 (423)
68 3emu_A Leucine rich repeat and 20.1 69 0.0024 24.6 3.0 23 213-235 103-126 (161)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=1.2e-87 Score=646.83 Aligned_cols=297 Identities=32% Similarity=0.599 Sum_probs=279.9
Q ss_pred CCccCCCCCCCchhhhHHHHHHHhhhccccCCCccchhHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHhhcCccccc
Q 044462 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATE 80 (299)
Q Consensus 1 W~~~~~l~~~l~~~r~r~~e~y~~~~a~~~eP~~s~~Rl~~ak~~~l~~~~DD~~D~~~t~ee~~~~~~ai~rwd~~~~~ 80 (299)
||+++||..+|||+|||++|||||++|++|||++|.+|+++||.++|++++||+||.|||+||++.||+||+|||.++++
T Consensus 256 Wwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~ 335 (554)
T 3g4d_A 256 WWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCID 335 (554)
T ss_dssp HHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGG
T ss_pred HHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccc
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHH
Q 044462 81 QLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVML 160 (299)
Q Consensus 81 ~lp~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~ 160 (299)
+||+|||+||.+++++++|++.++.+.+|.+ ++.|++++|+++++||++||+|+.+||+||+||||++|.+|+|+++++
T Consensus 336 ~LPeymK~~f~al~~~~~e~~~~~~~~~~~~-~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~ 414 (554)
T 3g4d_A 336 EIPEYMKPSYKALLDVYEEMVQLVAEHGRQY-RVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLA 414 (554)
T ss_dssp GSCGGGHHHHHHHHHHHHHHHHHHGGGTCTH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHH
Confidence 9999999999999999999999988877777 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCchHHHhhccCchHHHHHHhhHhhhccCCCCChhhhhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 044462 161 LHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAET 240 (299)
Q Consensus 161 ~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~ 240 (299)
+++++++|+.+|+++++|++++|+++++++.++||+|||+||++|+++|+++|+|.|||+|+|+|+|+|+++++++|+++
T Consensus 415 ~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~ 494 (554)
T 3g4d_A 415 ITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESA 494 (554)
T ss_dssp HHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999987899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhCCCCCCcHHHHHHHHHHhhhhhhhcccCCCCCCc-hhHHHHHHhcccccCC
Q 044462 241 WMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQ-ENTKDRVLSLFIDPIP 299 (299)
Q Consensus 241 ~k~l~~~~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~d~~~~~-~~~~~~i~~~~~~p~~ 299 (299)
||++|+++++++. +|++|+++++|++|+++++|+++||||.| +.+|++|++||++||+
T Consensus 495 wK~lN~e~l~~~~-~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 553 (554)
T 3g4d_A 495 WKDLNQEFLKPTE-MPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIA 553 (554)
T ss_dssp HHHHHHHHSSSCS-SCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCC
Confidence 9999999999878 99999999999999999999999999998 6899999999999986
No 2
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=1.9e-87 Score=646.19 Aligned_cols=297 Identities=49% Similarity=0.897 Sum_probs=288.6
Q ss_pred CCccCCCCCCCchhhhHHHHHHHhhhccccCCCccchhHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHhhcCccccc
Q 044462 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATE 80 (299)
Q Consensus 1 W~~~~~l~~~l~~~r~r~~e~y~~~~a~~~eP~~s~~Rl~~ak~~~l~~~~DD~~D~~~t~ee~~~~~~ai~rwd~~~~~ 80 (299)
||+++||..+|||+|||++|||||++|++|||++|.+|+++||.++|++++||+||.|||+||++.||+||+|||.++++
T Consensus 254 Wwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~~~~~ 333 (555)
T 3n0f_A 254 WWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAIN 333 (555)
T ss_dssp HHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCGGGGG
T ss_pred HHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCccccc
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHH
Q 044462 81 QLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVML 160 (299)
Q Consensus 81 ~lp~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~ 160 (299)
+||+|||+||.+++++++|++.++.++||++ +++|++++|+++++||++||+|+.+||+||+||||++|.+|+|+++++
T Consensus 334 ~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~-~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~ 412 (555)
T 3n0f_A 334 DLPDYMKLCFLALYNTINEIAYDNLKDKGEN-ILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQL 412 (555)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCchHHHhhccCchHHHHHHhhHhhhccCCCCChhhhhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 044462 161 LHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAET 240 (299)
Q Consensus 161 ~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~ 240 (299)
+++++++|+.+|+++++|+.++|+++++++.++||+|||+||++|+++|+++|+|.|||+|+|+|+|+|+++++++|+++
T Consensus 413 ~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~ 492 (555)
T 3n0f_A 413 IFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLIDET 492 (555)
T ss_dssp HHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhCCCCCCcHHHHHHHHHHhhhhhhhcccCCCCCCc-hhHHHHHHhcccccCC
Q 044462 241 WMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQ-ENTKDRVLSLFIDPIP 299 (299)
Q Consensus 241 ~k~l~~~~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~d~~~~~-~~~~~~i~~~~~~p~~ 299 (299)
||+||+++++++. +|++|+++++|++|+++++|+++||||.| ..||++|++||++||+
T Consensus 493 wK~lN~e~l~~~~-~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 493 WKKMNKEKLGGSL-FAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHSCCS-SCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 9999999999877 99999999999999999999999999998 6899999999999986
No 3
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=1.8e-86 Score=638.07 Aligned_cols=296 Identities=30% Similarity=0.595 Sum_probs=283.2
Q ss_pred CCccCCCCCCCchhhhHHHHHHHhhhccccCCCccchhHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHhhcCccccc
Q 044462 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATE 80 (299)
Q Consensus 1 W~~~~~l~~~l~~~r~r~~e~y~~~~a~~~eP~~s~~Rl~~ak~~~l~~~~DD~~D~~~t~ee~~~~~~ai~rwd~~~~~ 80 (299)
||+++||..+|||+|||++|||||++|++|||++|.+|+++||.++|++++||+||.|||+||++.||+||+|||.++++
T Consensus 252 Wwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~ 331 (550)
T 3m00_A 252 WWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEID 331 (550)
T ss_dssp HHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCGGGGG
T ss_pred HHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhcCccccc
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHH
Q 044462 81 QLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVML 160 (299)
Q Consensus 81 ~lp~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~ 160 (299)
+||+|||+||.+++++++|++.++.+.+|.. ++.|++++|+++++||++||+|+.+||+||+||||++|.+|+|++++.
T Consensus 332 ~LPeymK~~f~al~~~~~E~~~~~~~~~~~~-~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~ 410 (550)
T 3m00_A 332 RLPDYMKISYKAILDLYKDYEKELSSAGRSH-IVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLA 410 (550)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHTTTCGG-GHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHH
Confidence 9999999999999999999999888877777 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCchHHHhhccCchHHHHHHhhHhhhccCCCCChhhhhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 044462 161 LHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAET 240 (299)
Q Consensus 161 ~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~ 240 (299)
+++++++ +.+|+++++|+.++|+++++++.++||+|||+||++|+++|+++|+|.|||+|+|+|+|+|+++++++|+++
T Consensus 411 ~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~ 489 (550)
T 3m00_A 411 TTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETA 489 (550)
T ss_dssp HHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9887765 679999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhCCCCCCcHHHHHHHHHHhhhhhhhcccC-CCCCCc-hhHHHHHHhcccccCC
Q 044462 241 WMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYG-DGHGVQ-ENTKDRVLSLFIDPIP 299 (299)
Q Consensus 241 ~k~l~~~~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~-d~~~~~-~~~~~~i~~~~~~p~~ 299 (299)
||++|+++++++. +|++|+++++|++|+++++|+++ ||||.| ..||++|++||++||+
T Consensus 490 wK~lN~e~l~~~~-~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 549 (550)
T 3m00_A 490 WKDINEGLLRPTP-VSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIK 549 (550)
T ss_dssp HHHHHHHTSSSCS-SCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCC
Confidence 9999999999878 99999999999999999999998 999999 5899999999999986
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=9.7e-83 Score=616.92 Aligned_cols=297 Identities=48% Similarity=0.884 Sum_probs=290.9
Q ss_pred CCccCCCCCCCchhhhHHHHHHHhhhccccCCCccchhHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHhhcCccccc
Q 044462 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATE 80 (299)
Q Consensus 1 W~~~~~l~~~l~~~r~r~~e~y~~~~a~~~eP~~s~~Rl~~ak~~~l~~~~DD~~D~~~t~ee~~~~~~ai~rwd~~~~~ 80 (299)
||+++||..++||+|+|++++|||++|++|||++|.+|+++||+++|++++||+||.+||++|++.|+++++|||.++++
T Consensus 245 Wwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD~~~~~ 324 (543)
T 2ong_A 245 WWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSID 324 (543)
T ss_dssp HHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCSSTTT
T ss_pred HHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccc
Confidence 99999997779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHH
Q 044462 81 QLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVML 160 (299)
Q Consensus 81 ~lp~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~ 160 (299)
++|+|||++|.+++++++|++.++.+.+|+. +++|++++|++++++|++||+|+.+|++||+||||++|.+|+|+++++
T Consensus 325 ~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~-~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~ 403 (543)
T 2ong_A 325 QLPDYMQLCFLALNNFVDDTSYDVMKEKGVN-VIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCML 403 (543)
T ss_dssp TSCSHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCchHHHhhccCchHHHHHHhhHhhhccCCCCChhhhhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 044462 161 LHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAET 240 (299)
Q Consensus 161 ~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~ 240 (299)
+++++++|..+|+++++|+.++|+++++++.++||+|||+||++|+++|+++|+|.|||+|+|+|+|+|+++++++|+++
T Consensus 404 ~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~ 483 (543)
T 2ong_A 404 THIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEV 483 (543)
T ss_dssp HHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhh-hCCCCCCcHHHHHHHHHHhhhhhhhcccCCCCCCc-hhHHHHHHhcccccCC
Q 044462 241 WMKMNSAR-FGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQ-ENTKDRVLSLFIDPIP 299 (299)
Q Consensus 241 ~k~l~~~~-l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~d~~~~~-~~~~~~i~~~~~~p~~ 299 (299)
||+||+++ +++++ +|++|+++++|++|+++++|+++||||.| .++|+||++||++|||
T Consensus 484 wk~ln~e~~l~~~~-vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 484 WKKMNAERVSKDSP-FGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHTCSSCS-SCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHHHHHHhccCCCC-CCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 99999999 98777 99999999999999999999999999999 6899999999999996
No 5
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=2.6e-82 Score=634.21 Aligned_cols=296 Identities=35% Similarity=0.686 Sum_probs=281.8
Q ss_pred CCccCCCCCCCchhhhHHHHHHHhhhccccCCCccchhHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHhhcCccccc
Q 044462 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATE 80 (299)
Q Consensus 1 W~~~~~l~~~l~~~r~r~~e~y~~~~a~~~eP~~s~~Rl~~ak~~~l~~~~DD~~D~~~t~ee~~~~~~ai~rwd~~~~~ 80 (299)
||+++|| .++||+|||++|||||++|++|||++|.+|++|||.++|++++||+||.|||+||++.||++|+|||.++++
T Consensus 516 Wwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~ 594 (817)
T 3sdr_A 516 WFRDSGL-PLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTE 594 (817)
T ss_dssp HHHHSSG-GGCTTSCCCHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGG
T ss_pred eHHhcCC-CcCccHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhh
Confidence 9999999 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhH-H
Q 044462 81 QLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPV-M 159 (299)
Q Consensus 81 ~lp~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~-~ 159 (299)
+||+|||+||.+++++++|++.++.++||++ ++.|++++|++++++|++||+|+.+||+||+||||++|.+|+|+++ +
T Consensus 595 ~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~-~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll 673 (817)
T 3sdr_A 595 NLPDYMKLCYQIYYDIVHEVAWEAEKEQGRE-LVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILL 673 (817)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHH
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999999999999998 8
Q ss_pred HHHHHHhhcCCCchHHHhhcc--CchHHHHHHhhHhhhccCCCCChhhhhcCCCCchHHHHhhcC-CCCHHHHHHHHHHH
Q 044462 160 LLHAYAFTANPITKEALEFLQ--DSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHET-RVSEDEAREHIRDL 236 (299)
Q Consensus 160 ~~~~~~~~g~~l~~e~~~~~~--~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e~-g~s~eeA~~~i~~~ 236 (299)
+..+++++|+.+|+++++|+. +.|+++++++.++||+|||+||++|+++|+++|+|+|||||| |+|+|+|+++++++
T Consensus 674 ~~~~~~~~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~ 753 (817)
T 3sdr_A 674 LSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSI 753 (817)
T ss_dssp HHHHTTCTTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHhcccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 888888899999999999975 345999999999999999999999999999999999999999 79999999999999
Q ss_pred HHHHHHHHhhhhhCCCCCCcHHHHHHHHHHhhhhhhhcccCCCCCCc-hhHHHHHHhcccccCC
Q 044462 237 IAETWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQ-ENTKDRVLSLFIDPIP 299 (299)
Q Consensus 237 i~~~~k~l~~~~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~d~~~~~-~~~~~~i~~~~~~p~~ 299 (299)
|+++||+||+++++++. +|++|+++++|++|+++++|+++||||.| ++||++|++||++||+
T Consensus 754 Ie~~wKeln~e~l~~~~-~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~ 816 (817)
T 3sdr_A 754 LEPAVKELTREFLKPDD-VPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLP 816 (817)
T ss_dssp HHHHHHHHHHHHHSCCS-SCHHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCC
Confidence 99999999999999878 99999999999999999999999999998 6899999999999986
No 6
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=1.6e-82 Score=615.09 Aligned_cols=297 Identities=46% Similarity=0.822 Sum_probs=279.4
Q ss_pred CCccCCCCCCCchhhhHHHHHHHhhhccccCCCccchhHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHhhcCccccc
Q 044462 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATE 80 (299)
Q Consensus 1 W~~~~~l~~~l~~~r~r~~e~y~~~~a~~~eP~~s~~Rl~~ak~~~l~~~~DD~~D~~~t~ee~~~~~~ai~rwd~~~~~ 80 (299)
||+++||.+++||+|+|++++|||++|++|||++|.+|+++||+++|++++||+||.+||++|++.|+++++|||.++++
T Consensus 251 Wwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~rWD~~~~~ 330 (549)
T 1n1b_A 251 WWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESIT 330 (549)
T ss_dssp HHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSGGG
T ss_pred HHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccc
Confidence 99999997779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHH
Q 044462 81 QLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVML 160 (299)
Q Consensus 81 ~lp~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~ 160 (299)
++|+|||++|.+++++++|++.++.+.+|+. +..+++++|++++++|++||+|+.+|++||+||||++|.+|+|+++++
T Consensus 331 ~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~-~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~ 409 (549)
T 1n1b_A 331 RLPYYMQLCYWGVHNYISDAAYDILKEHGFF-CLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAII 409 (549)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHH
Confidence 9999999999999999999999998989998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCchHH-HhhccCchHHHHHHhhHhhhccCCCCChhhhhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHH
Q 044462 161 LHAYAFTANPITKEA-LEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAE 239 (299)
Q Consensus 161 ~~~~~~~g~~l~~e~-~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~ 239 (299)
+++++++|..+|+++ ++|+.++|+++++++.++||+|||+||++|+++|+++|+|.|||+|+|+|+|||++++++++++
T Consensus 410 ~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~ 489 (549)
T 1n1b_A 410 SPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIRE 489 (549)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999 9998889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhCCCCCCcHHHHHHHHHHhhhhhhhcccCCCCCCc-hhHHHHHHhcccccCC
Q 044462 240 TWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQ-ENTKDRVLSLFIDPIP 299 (299)
Q Consensus 240 ~~k~l~~~~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~d~~~~~-~~~~~~i~~~~~~p~~ 299 (299)
+||++|+++++++. +|++|+++++|++|+++++|+++||||.| ..+|++|++||++|||
T Consensus 490 ~wk~ln~e~l~~~~-vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 490 AWKDMNTAIAAGYP-FPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHHHHHHHHHTCCS-SCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 99999999999878 99999999999999999999999999998 5799999999999996
No 7
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=6.6e-82 Score=629.06 Aligned_cols=295 Identities=32% Similarity=0.669 Sum_probs=283.4
Q ss_pred CCccCCCCCCCchhhhHHHHHHHhhhccccCCCccchhHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHhhcCccccc
Q 044462 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATE 80 (299)
Q Consensus 1 W~~~~~l~~~l~~~r~r~~e~y~~~~a~~~eP~~s~~Rl~~ak~~~l~~~~DD~~D~~~t~ee~~~~~~ai~rwd~~~~~ 80 (299)
||+++|| .++||+|||++|||||++|++|||++|.+|++|||.++|++++||+||.|||+||++.||++|+|||.++++
T Consensus 488 Wwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~ 566 (785)
T 3s9v_A 488 WWKSSGF-TDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVD 566 (785)
T ss_dssp HHHHTTT-TSCSSSCCCHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGG
T ss_pred HHHHcCC-CcCccHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhh
Confidence 9999999 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHH
Q 044462 81 QLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVML 160 (299)
Q Consensus 81 ~lp~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~ 160 (299)
+||+|||+||.+++++++|++.++.+++|++ +++|++++|++++++|++||+|+.+||+||+||||++|.+|+|+++++
T Consensus 567 ~Lpeymk~~f~aL~~~~nei~~~~~~~~g~~-~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~ 645 (785)
T 3s9v_A 567 QMPQQMKICFVGFYNTFNDIAKEGRERQGRD-VLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVV 645 (785)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHH
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHH
Confidence 9999999999999999999999999988998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCchHHHhhccCchHHHHHHhhHhhhccCCCCChhhhhcCCCCchHHHHhhcC-CCCHHHHHHHHHHHHHH
Q 044462 161 LHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHET-RVSEDEAREHIRDLIAE 239 (299)
Q Consensus 161 ~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e~-g~s~eeA~~~i~~~i~~ 239 (299)
+.+++++|+.+|+++++|+..+|+++++++.++||+|||+||++|+++|+++|+|.|||||+ |+|+|+|+++++++|++
T Consensus 646 ~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~ 725 (785)
T 3s9v_A 646 LISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMEN 725 (785)
T ss_dssp HHHTTCSSSCCCHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHhcccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999986559999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhhhhhCCCCCCcHHHHHHHHHHhhhhhhhcccCCCCCCch--hHHHHHHhcccccCC
Q 044462 240 TWMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQE--NTKDRVLSLFIDPIP 299 (299)
Q Consensus 240 ~~k~l~~~~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~d~~~~~~--~~~~~i~~~~~~p~~ 299 (299)
+||+||++++++ . +|++|+++++|++|+++++|+++||||.|+ +||++|++||++||.
T Consensus 726 ~wKeln~e~l~~-~-~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 726 ALEELNREFVNN-K-IPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHS-C-CCHHHHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 999999999984 5 999999999999999999999999999984 599999999999984
No 8
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=2.5e-82 Score=615.40 Aligned_cols=296 Identities=47% Similarity=0.853 Sum_probs=272.0
Q ss_pred CCccCCCCCCCchhhhHHHHHHHhhhccccCCCccchhHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHhhcCccccc
Q 044462 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATE 80 (299)
Q Consensus 1 W~~~~~l~~~l~~~r~r~~e~y~~~~a~~~eP~~s~~Rl~~ak~~~l~~~~DD~~D~~~t~ee~~~~~~ai~rwd~~~~~ 80 (299)
||+++||..++||+|+|++++|||++|++|||++|.+|+++||+++|++++||+||.+||++|++.|+++++|||.++++
T Consensus 272 Wwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~ai~rWD~~~~~ 351 (569)
T 2j5c_A 272 WWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMK 351 (569)
T ss_dssp HHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSSGGGG
T ss_pred HHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCccccc
Confidence 99999998779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHH
Q 044462 81 QLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVML 160 (299)
Q Consensus 81 ~lp~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~ 160 (299)
++|+|||+||.+++++++|++.++.+.+|+. +++|++++|++++++|++||+|+.+|++||+||||++|.+|+|+++++
T Consensus 352 ~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~-~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~ 430 (569)
T 2j5c_A 352 QLPPYMQICYLALFNFVNEMAYDTLRDKGFD-STPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPIL 430 (569)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCchHHHhhccCchHHHHHHhhHhhhccCCCCChhhhhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 044462 161 LHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAET 240 (299)
Q Consensus 161 ~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~ 240 (299)
+++++++|..+|+++++|+.++|+++++++.++||+|||+||++|+++|+++|+|.|||+|+|+|+|+|+++++++|+++
T Consensus 431 ~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~ 510 (569)
T 2j5c_A 431 SHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQT 510 (569)
T ss_dssp HHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhCCCCCCcHHHHHHHHHHhhhhhhhcccC-CCCCCc-hhHHHHHHhcccccCC
Q 044462 241 WMKMNSARFGNPPYLPDVFIGMAMNLVRMSQCMYLYG-DGHGVQ-ENTKDRVLSLFIDPIP 299 (299)
Q Consensus 241 ~k~l~~~~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~-d~~~~~-~~~~~~i~~~~~~p~~ 299 (299)
||+||+++++ ++ +|++|+++++|++|+++++|+++ ||||.| .++|++|++||++|||
T Consensus 511 wk~ln~e~l~-~~-vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 511 WKMMNKEMMT-SS-FSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp HHHHHHHHHH-CC-SCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHhc-cC-CCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 9999999999 77 99999999999999999999999 999999 6899999999999996
No 9
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=1.3e-81 Score=625.42 Aligned_cols=294 Identities=29% Similarity=0.576 Sum_probs=279.2
Q ss_pred CCccCCCCCCCchhhhHHHHHHHhhhccccCCCccchhHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHhhcCccccc
Q 044462 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATE 80 (299)
Q Consensus 1 W~~~~~l~~~l~~~r~r~~e~y~~~~a~~~eP~~s~~Rl~~ak~~~l~~~~DD~~D~~~t~ee~~~~~~ai~rwd~~~~~ 80 (299)
||+++|| .++||+|||++|||||++| |||++|.+|++|||.++|++++||+||.|||+||++.||++|+|||.++++
T Consensus 459 Wwk~~~l-~~l~faRdr~ve~Yfw~~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~ 535 (764)
T 3p5p_A 459 WWKESGM-ADINFTRHRVAEVYFSSAT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLH 535 (764)
T ss_dssp HHHHTST-TTTTCCHHHHHHHHHHTCC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGG
T ss_pred eHHhcCC-CcCccHHHHHHHHHHHHHh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhh
Confidence 9999999 6999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHH
Q 044462 81 QLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVML 160 (299)
Q Consensus 81 ~lp~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~ 160 (299)
+||+|||+||.+++++++|++.++.+++|++ +++|++++|++++++|++||+|+.+||+||+||||++|.+|+|+++++
T Consensus 536 ~LPeymk~~f~aL~~~~~ei~~~~~~~~g~~-~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~ 614 (764)
T 3p5p_A 536 EIPECMQTCFKVWFKLMEEVNNDVVKVQGRD-MLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCT 614 (764)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHH
Confidence 9999999999999999999999999888998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCchHHHhhccCchHHHHHHhhHhhhccCCCCChhhhhcCCCCchHHHHhhcC-CCCHHHHHHHHHHHHHH
Q 044462 161 LHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHET-RVSEDEAREHIRDLIAE 239 (299)
Q Consensus 161 ~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e~-g~s~eeA~~~i~~~i~~ 239 (299)
..+++++|+.+|+++++|+..+|+++++++.|+||+|||+||++|+++|+++|+|+|||||+ |+|+|+|+++++++|++
T Consensus 615 ~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~ 694 (764)
T 3p5p_A 615 LQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDR 694 (764)
T ss_dssp HHHHHTSSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999986569999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHhhhhhC-CCCCCcHHHHHHHHHHhhhhhhhcccCCCCCCc-hhHHHHHHhcccccCC
Q 044462 240 TWMKMNSARFG-NPPYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQ-ENTKDRVLSLFIDPIP 299 (299)
Q Consensus 240 ~~k~l~~~~l~-~~~~~p~~~~~~~~n~~r~~~~~Y~~~d~~~~~-~~~~~~i~~~~~~p~~ 299 (299)
+||+||+++++ ++. +|++|+++++|++|+++++|+++||||.| .+||++|++||++||+
T Consensus 695 ~wKeln~e~l~~~~~-~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 755 (764)
T 3p5p_A 695 ALKEASFEYFKPSND-IPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQ 755 (764)
T ss_dssp HHHHHHHHHHSCCSS-SCHHHHHHHHHTHHHHHHHSCC-------CCCHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCc
Confidence 99999999997 667 99999999999999999999999999998 4699999999999985
No 10
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=1.4e-52 Score=386.15 Aligned_cols=239 Identities=13% Similarity=0.098 Sum_probs=218.9
Q ss_pred CCccCCCCCCCchhhhHHHHHHHhhhccccCCCccchhH-HHHHHHHHHhhcccccccC--CCHHHHHHHHHHHhhcCcc
Q 044462 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRR-MSAMVNCLLTSIDDVYDVY--GTLDELELFTDAVERWDAT 77 (299)
Q Consensus 1 W~~~~~l~~~l~~~r~r~~e~y~~~~a~~~eP~~s~~Rl-~~ak~~~l~~~~DD~~D~~--~t~ee~~~~~~ai~rwd~~ 77 (299)
||+++|+. +.||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||.+ ++++|++.|++++++|+.+
T Consensus 29 W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee~~~~~~~l~~~~~~ 107 (337)
T 1ps1_A 29 WPRSLGLI-RSDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPEDTKQLTDQVAAALDG 107 (337)
T ss_dssp HHHHTTSC-CSHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHHHHHHHHHHHGGGTS
T ss_pred HHHHcCCC-CCHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHHHcCC
Confidence 99999995 469999999999999999999999999999 9999999999999999987 5999999999999999864
Q ss_pred ccccCchhHHHHHHHHHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CHHHHHHhhhhhcch
Q 044462 78 ATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIP-TLQEYMENAWISVTA 156 (299)
Q Consensus 78 ~~~~lp~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~P-s~eEYl~~~~~s~g~ 156 (299)
.+|+++++++.++.+++++++.. .+.. ..++++++|++|+.++++||+|+.+|++| |++||+++|+.|+|+
T Consensus 108 ---~~p~~~~~~~~~l~d~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~ 179 (337)
T 1ps1_A 108 ---PLPDTAPPIAHGFADIWRRTCEG----MTPA-WCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGV 179 (337)
T ss_dssp ---CCCTTSCHHHHHHHHHHHHHHTT----SCHH-HHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCH
T ss_pred ---CCCCCCChHHHHHHHHHHHHhcc----CCHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccch
Confidence 47889999999999999998654 3455 78899999999999999999999999999 999999999999999
Q ss_pred hHHHHHHHHhhcCCCchHHHhhccCchHHHHHHhhHhhhccCCCCChhhhhcCCCCchHHHHhhcCCCCHHHHHHHHHHH
Q 044462 157 PVMLLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDL 236 (299)
Q Consensus 157 ~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~ 236 (299)
+++++++++++|..+|+++++++ .++++.++++.++||+|||+||+||+++|+++|+|.|||+++|+|+|+|++++.++
T Consensus 180 ~~~~~~~~~~~g~~l~~~~~~~p-~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~g~s~eeA~~~v~~~ 258 (337)
T 1ps1_A 180 QPTVDLAERAGRFEVPHRVFDSA-VMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWSKSRSVSHMQNE 258 (337)
T ss_dssp HHHHHHHHHHHTCCCCHHHHTSH-HHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCCCCCHHHHhCh-HHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999998874 57799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhh
Q 044462 237 IAETWMKMNSARF 249 (299)
Q Consensus 237 i~~~~k~l~~~~l 249 (299)
+++.||++|++.-
T Consensus 259 i~~~~~~~~~~~~ 271 (337)
T 1ps1_A 259 VRARLEQYLLLES 271 (337)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
No 11
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=2.7e-50 Score=364.99 Aligned_cols=231 Identities=12% Similarity=0.040 Sum_probs=213.0
Q ss_pred CCccCCCCCCCchhhhHHHHHHHhhhccccCCCccchhH-HHHHHHHHHhhcccccccCCCHHHHHHHHHHHhhcCcccc
Q 044462 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRR-MSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATAT 79 (299)
Q Consensus 1 W~~~~~l~~~l~~~r~r~~e~y~~~~a~~~eP~~s~~Rl-~~ak~~~l~~~~DD~~D~~~t~ee~~~~~~ai~rwd~~~~ 79 (299)
||+++|+. +.|++|+|++++|||.++++++|+++.+|+ ++||++.|+|++||+||. ++.+|++.|++++.+|+.+
T Consensus 25 W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~~~~~~~~~~~-- 100 (300)
T 1di1_A 25 YFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAYNNRLIPISRG-- 100 (300)
T ss_dssp HHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHccC--
Confidence 88999995 569999999999999999888999999999 999999999999999999 6789999999999999865
Q ss_pred ccCchhHHHHHHHHHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHH
Q 044462 80 EQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVM 159 (299)
Q Consensus 80 ~~lp~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~ 159 (299)
+.+|+++++++.++++++++++.... .+.++.|+.+++++. |++|+..|++||++||+++|+.|+|++++
T Consensus 101 ~~lp~~~~~~~~~l~d~~~~~~~~~~---------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~ 170 (300)
T 1di1_A 101 DVLPDRTKPEEFILYDLWESMRAHDA---------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYLEYREKDVGKALL 170 (300)
T ss_dssp SSCCCTTCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHHHHHTCHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhCh---------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHHHHhhhccHHHH
Confidence 46899999999999999999987652 134667999999987 89999999999999999999999999999
Q ss_pred HHHHHHhhcCCCchHHHhhccCchHHHHHHhhHhhhccCCCCChhhhhcCC--------CCchHHHHhhcCCCCHHHHHH
Q 044462 160 LLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGD--------VPKSIQCYMHETRVSEDEARE 231 (299)
Q Consensus 160 ~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~--------~~n~V~~ym~e~g~s~eeA~~ 231 (299)
+.++++++|..+|+++++ ..++++++++.++||+|||+||+||+++|+ ++|+|.|||+++|+|+|+|++
T Consensus 171 ~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~~~g~s~eeA~~ 247 (300)
T 1di1_A 171 SALMRFSMGLRLSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAEESKLGIPATKR 247 (300)
T ss_dssp HHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHHHHcCCCHHHHHH
Confidence 999999999999999998 379999999999999999999999999998 779999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 044462 232 HIRDLIAETWMKMNSAR 248 (299)
Q Consensus 232 ~i~~~i~~~~k~l~~~~ 248 (299)
++.+++++.|+++++..
T Consensus 248 ~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 248 VLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999876
No 12
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=1.5e-49 Score=391.66 Aligned_cols=241 Identities=14% Similarity=0.205 Sum_probs=205.0
Q ss_pred CCccCCCCCCCchhhhHHHHHHHhhhccccCCCccchhHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHhhcCcc---
Q 044462 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDAT--- 77 (299)
Q Consensus 1 W~~~~~l~~~l~~~r~r~~e~y~~~~a~~~eP~~s~~Rl~~ak~~~l~~~~DD~~D~~~t~ee~~~~~~ai~rwd~~--- 77 (299)
|||++|| .++||+|||++|||||++|++|||+||.+|+++||.+++++++||+||.|| ||++.||++|+|||.+
T Consensus 463 Wwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~~~~~ 539 (727)
T 3pya_A 463 WYEENRL-SEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIANARR 539 (727)
T ss_dssp HHHHTTG-GGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC-----
T ss_pred eHHhcCc-ccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhccccccc
Confidence 9999999 679999999999999999999999999999999999999999999999999 9999999999999974
Q ss_pred ------cccc---Cchh--HHHHHHHHHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Q 044462 78 ------ATEQ---LPYY--MKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEY 146 (299)
Q Consensus 78 ------~~~~---lp~~--~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEY 146 (299)
+.+. +|++ ||.||.+++++++|++.++.+.||++ +.+|++++|.+|++++++|++ + +|
T Consensus 540 ~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~-v~~~l~~~W~~~l~s~~~Ea~-~--------~E- 608 (727)
T 3pya_A 540 SDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRD-VNNLLYLSWGDWMEKWKLYGD-E--------GE- 608 (727)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHSS-C--------CH-
T ss_pred ccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHhcc-c--------cc-
Confidence 3222 2776 89999999999999999999999999 999999999999999999987 2 22
Q ss_pred HHhhhhhcchhHHHHHHHHhhcCCCchHHHhhccCchHHHHHHhhHhhhccCCCCChhhhhcCCCCchHHHHhhcCCCCH
Q 044462 147 MENAWISVTAPVMLLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSE 226 (299)
Q Consensus 147 l~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e~g~s~ 226 (299)
|. +++.++.+..|..+++ ++.+ +.|..+.++++.++||+||+.+|++|+
T Consensus 609 --------Ae-llv~~I~l~sG~~l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~-------------------- 657 (727)
T 3pya_A 609 --------GE-LMVKMIILMKNNDLTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE-------------------- 657 (727)
T ss_dssp --------HH-HHHHHHHHHSSSCGGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH--------------------
T ss_pred --------ee-eeeeeeecCCCcchHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH--------------------
Confidence 22 4444455555888998 8776 468889999999999999999999977
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhCCC--CCCcHHHHHHHHHHhhhhhhhcccCCCCCCchhHHHHHHhcccccC
Q 044462 227 DEAREHIRDLIAETWMKMNSARFGNP--PYLPDVFIGMAMNLVRMSQCMYLYGDGHGVQENTKDRVLSLFIDPI 298 (299)
Q Consensus 227 eeA~~~i~~~i~~~~k~l~~~~l~~~--~~~p~~~~~~~~n~~r~~~~~Y~~~d~~~~~~~~~~~i~~~~~~p~ 298 (299)
.+++.+.|+..|++|+++|++++ + +|++| +|++++|++ +|. |||+|+ |+.||++|++||+
T Consensus 658 ---~~~~~~~IE~~mqEL~~lVl~~~~~~-ip~~~--tf~~V~ksF--Yy~---ay~~p~-i~~hI~kVl~~~~ 719 (727)
T 3pya_A 658 ---KEKTIKSMEKEMGKMVELALSESDTF-RDVSI--TFLDVAKAF--YYF---ALCGDH-LQTHISKVLFQKV 719 (727)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHSCCTTT-HHHHH--HHHHHHHHH--HHH---HHHTTS-CHHHHHHHHHSCC
T ss_pred ---HHHHHHHHHHHHHHHHHHHhccCCCC-CCCcc--cHHHHHHHH--Hhh---hcCCHH-HHHHHHHHHcCcc
Confidence 44788999999999999999864 6 99999 777777777 666 999999 9999999999997
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=8.7e-49 Score=358.34 Aligned_cols=231 Identities=14% Similarity=0.075 Sum_probs=209.5
Q ss_pred CCccCCCCCCCchhhhHHHHHHHhhhccccCCCccchhH-HHHHHHHHHhhcccccccCCCHHHHHHHHHHHhhcCcccc
Q 044462 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRR-MSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATAT 79 (299)
Q Consensus 1 W~~~~~l~~~l~~~r~r~~e~y~~~~a~~~eP~~s~~Rl-~~ak~~~l~~~~DD~~D~~~t~ee~~~~~~ai~rwd~~~~ 79 (299)
||+++|+..+ ||+|+|++++|||.++++++|+++.+|+ ++||++.|+|++||+||. ++.+|++.|++++.+|+.+
T Consensus 39 W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~~~~~~~l~~~~~~-- 114 (320)
T 3bny_A 39 YFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEGSAYNEKLIPISRG-- 114 (320)
T ss_dssp HHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhHHHHHHHHHHHhcC--
Confidence 8899999655 9999999999999999889999999999 899999999999999999 7899999999999999864
Q ss_pred ccCchhHHHHHHHHHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHH
Q 044462 80 EQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVM 159 (299)
Q Consensus 80 ~~lp~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~ 159 (299)
+.+|+++++++.++++++++++... + .+.++.|+.++ ++++|++|+.+|++||++||+++|+.|+|++++
T Consensus 115 ~~~p~~~~~~~~al~d~~~e~~~~~-~--------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~ 184 (320)
T 3bny_A 115 DVLPDRSIPVEYIIYDLWESMRAHD-R--------EMADEILEPVF-LFMRAQTDRTRARPMGLGGYLEYRERDVGKELL 184 (320)
T ss_dssp SSCCCTTSHHHHHHHHHHHHHHHHH-H--------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHHhhC-H--------HHHHHHHHHHH-HHHHHHhhhccCCCCCHHHHHHHhhhcccHHHH
Confidence 4679999999999999999998664 2 12345566666 599999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCchHHHhhccCchHHHHHHhhHhhhccCCCCChhhhhcCC--------CCchHHHHhhcCCCCHHHHHH
Q 044462 160 LLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGD--------VPKSIQCYMHETRVSEDEARE 231 (299)
Q Consensus 160 ~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~--------~~n~V~~ym~e~g~s~eeA~~ 231 (299)
+.++++++|..+|+++++. +++++++++.++||+|||+||+||+++|+ ++|+|.|||+++|+|+|+|++
T Consensus 185 ~~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~~m~~~g~s~eeA~~ 261 (320)
T 3bny_A 185 AALMRFSMGLKLSPSELQR---VREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKR 261 (320)
T ss_dssp HHHHHHHHTCCCCHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchHHHHHHHcCCCHHHHHH
Confidence 9999999999999999983 79999999999999999999999999998 789999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 044462 232 HIRDLIAETWMKMNSAR 248 (299)
Q Consensus 232 ~i~~~i~~~~k~l~~~~ 248 (299)
++.+++++.++++++..
T Consensus 262 ~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 262 VLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999866
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=2.7e-48 Score=363.15 Aligned_cols=239 Identities=10% Similarity=0.011 Sum_probs=218.2
Q ss_pred CCccCCCCCCCchhhhHHHHHHHhhhccccCCCccchhH-HHHHHHHHHhhccccccc--CC-CHHHHHHHHHHHhhcCc
Q 044462 1 WWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRR-MSAMVNCLLTSIDDVYDV--YG-TLDELELFTDAVERWDA 76 (299)
Q Consensus 1 W~~~~~l~~~l~~~r~r~~e~y~~~~a~~~eP~~s~~Rl-~~ak~~~l~~~~DD~~D~--~~-t~ee~~~~~~ai~rwd~ 76 (299)
||+++|+. .-+++|+|+++++||.++++++|+++.+|+ ++||+++|+|++||+||. ++ ++++++.+++++.++-.
T Consensus 69 W~~~~gl~-~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~~l~ 147 (382)
T 3kb9_A 69 WLLEKRLM-PADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTALD 147 (382)
T ss_dssp HHHHTTSS-CHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCC-CCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHHhc
Confidence 89999995 447899999999999999999999999999 999999999999999996 45 89999999999987522
Q ss_pred cccccCchhHHHHHHHHHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcch
Q 044462 77 TATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTA 156 (299)
Q Consensus 77 ~~~~~lp~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~ 156 (299)
. ...+|+++++++.++.+++++++..+ +.. ..++++++|++|++++++||+|+.+|++||++||+++|+.|+|+
T Consensus 148 ~-~~~~p~~~~p~~~al~dl~~~~~~~~----~~~-~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~ 221 (382)
T 3kb9_A 148 S-PGDHLHHEDTLVAGFADSVRRLYAFL----PAT-WNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAH 221 (382)
T ss_dssp S-CGGGTTCSSHHHHHHHHHHHHHTTSS----CHH-HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTH
T ss_pred C-CCCCCCCCChHHHHHHHHHHHHHccC----CHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCH
Confidence 2 23357788999999999999986432 334 68899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCchHHHhhccCchHHHHHHhhHhhhccCCCCChhhhhcCCCCchHHHHhhcCCCCHHHHHHHHHHH
Q 044462 157 PVMLLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDL 236 (299)
Q Consensus 157 ~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~ 236 (299)
.+++.++++++|..+|+++++++ .++++++++++++||+|||+||+||+++|+++|+|.|||+++|+|+|+|++++.++
T Consensus 222 ~~~~~l~~~~~g~~l~~~~~~~p-~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v~~~ 300 (382)
T 3kb9_A 222 WIWTDLLEPSSGCELPDAVRKHP-AYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVRRR 300 (382)
T ss_dssp HHHHHHHHHHHTCCCCHHHHTSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999984 57889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 044462 237 IAETWMKMNSA 247 (299)
Q Consensus 237 i~~~~k~l~~~ 247 (299)
+++.||+|++.
T Consensus 301 i~~~~k~~~~~ 311 (382)
T 3kb9_A 301 VEECITEFLAV 311 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=4.8e-36 Score=282.83 Aligned_cols=239 Identities=12% Similarity=0.057 Sum_probs=181.3
Q ss_pred CCccCCCCCCCchhhhHHHHH-HHhhhccccCCCc-cchhH-HHHHHHHHHhhcccc-cccCC-CHHH-HHHHHH---HH
Q 044462 1 WWKKTGLGEKLNFARDRVVEN-FFWTVGDIFEPQF-GYCRR-MSAMVNCLLTSIDDV-YDVYG-TLDE-LELFTD---AV 71 (299)
Q Consensus 1 W~~~~~l~~~l~~~r~r~~e~-y~~~~a~~~eP~~-s~~Rl-~~ak~~~l~~~~DD~-~D~~~-t~ee-~~~~~~---ai 71 (299)
|-.+.++...-+ .|+++..+ |...+|..| |.. +.+|| ..+|++.|+|++||+ +|..+ +.+. ...+.. ++
T Consensus 138 W~~~~~~l~~~~-~~~~~~~~~~~llaa~~y-P~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a~~~~ 215 (433)
T 3v1v_A 138 WAEDEVQLYPEE-WEGQFDGFSVGRYMVGCH-PDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLAHTAI 215 (433)
T ss_dssp HHHHTSCCCC-----CCSCHHHHHHHHHHHC-TTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHHHTTT
T ss_pred HHHHcCCCCCHH-HHHHHHhcCHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHHHHHH
Confidence 445555433323 46677777 555566666 999 79998 889999999999999 59743 2221 112222 12
Q ss_pred hhcCccccccCch-----hHHHHHHHHHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Q 044462 72 ERWDATATEQLPY-----YMKLCFHALYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEY 146 (299)
Q Consensus 72 ~rwd~~~~~~lp~-----~~~~~~~~l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEY 146 (299)
..... ..+.-|. .-.++..+++++++++...+.+ . ..++++++|++|+++|++||+|+..|++||++||
T Consensus 216 d~l~~-~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a~~----~-q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEY 289 (433)
T 3v1v_A 216 DHFHS-TAEYTPTWQASLAADAPRRAYDSAMGYFVRAATP----S-QSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEY 289 (433)
T ss_dssp SCCCC-CTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHSCH----H-HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred Hhhhc-ccCCCCccccccCCchHHHHHHHHHHHHHhhcCH----H-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 11111 0000010 0125678999999999765333 3 5778999999999999999999999999999999
Q ss_pred HHhhhhhcchhHHHHHHHHhhcCCCchHHHhhccCchHHHHHHhhHhhhccCCCCChhhhhcC-CCCchHHHHhhcCCCC
Q 044462 147 MENAWISVTAPVMLLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRG-DVPKSIQCYMHETRVS 225 (299)
Q Consensus 147 l~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~g-~~~n~V~~ym~e~g~s 225 (299)
|++|+.| |+.+++.++++++|..+|++++++. .+.++.+++++++||+|||+||+||+++| +++|+|.|||+++|+|
T Consensus 290 l~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~p-~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~g~S 367 (433)
T 3v1v_A 290 LAMRQFN-NFRPCPTITDTVGGYELPADLHARP-DMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVIAEREQLC 367 (433)
T ss_dssp HHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTSH-HHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHHTCC
T ss_pred HHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhCc-hHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHHHHhcCCC
Confidence 9999999 7666667788889999999999884 47889999999999999999999999985 7889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 044462 226 EDEAREHIRDLIAETWMKMNSARF 249 (299)
Q Consensus 226 ~eeA~~~i~~~i~~~~k~l~~~~l 249 (299)
+|+|++++.+++++.++++.+..-
T Consensus 368 ~eeA~~~v~~~i~~~~~~F~~~~~ 391 (433)
T 3v1v_A 368 ERDAYLKAVEVHNELQHSFEAAAA 391 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887543
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.84 E-value=8.5e-21 Score=175.45 Aligned_cols=227 Identities=13% Similarity=0.031 Sum_probs=166.1
Q ss_pred hhhHHHHHHHhhhccccCCCccchhH-HHHHHHHHHhhcccccccCCCHHHHHHHHHHHhhcCccccccCchhHHHHHHH
Q 044462 14 ARDRVVENFFWTVGDIFEPQFGYCRR-MSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATATEQLPYYMKLCFHA 92 (299)
Q Consensus 14 ~r~r~~e~y~~~~a~~~eP~~s~~Rl-~~ak~~~l~~~~DD~~D~~~t~ee~~~~~~ai~rwd~~~~~~lp~~~~~~~~~ 92 (299)
..++++.+=.|+++..| |..+.+.+ .+++++.|+|++||++|..+ +++..|.+.+.+ +.. ++ .++..+
T Consensus 62 ~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~--~~l~~~~~~ll~--G~~----~~--~Pl~~a 130 (374)
T 1yyq_A 62 RLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY--PTMVNYFDDLQA--GRE----QA--HPWWAL 130 (374)
T ss_dssp HHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--HHHTTHHHHHHH--TCC----CS--SHHHHH
T ss_pred HHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--HHHHHHHHHHhc--CCC----CC--ChHHHH
Confidence 34566666566666666 99999998 88999999999999999754 667777776553 211 11 256667
Q ss_pred HHhhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHhhcCCCc
Q 044462 93 LYNSVNEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPIT 172 (299)
Q Consensus 93 l~~~~~ei~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~ 172 (299)
+.+.+.++. ...+.. +..++.++|.+|+.++..|+.. .+..|+.++|...++.++|+..... |..+|
T Consensus 131 l~dl~~rl~----~~~~p~-~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~~~Y~~~rR~~sG~~E~~~------~~~~P 197 (374)
T 1yyq_A 131 VNEHFPNVL----RHFGPF-CSLNLIRSTLDFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVG------ASLWP 197 (374)
T ss_dssp HHHHHHHHH----TTSCHH-HHHHHHHHHHHHHHHHHHHTTC--CCCCTTCTTHHHHHHHHHHCHHHHH------HTTCC
T ss_pred HHHHHHHHH----HhcCHH-HHHHHHHHHHHHHHHHHHHHhc--cCCCCCHHHHHHHHHhhccHHHHHH------Hhhcc
Confidence 777777663 324455 7889999999999999999873 6778999999999888888753332 22334
Q ss_pred hHHH-hh--ccCchHHHHHHhhHhhhccCCCCChhhhh-cCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 044462 173 KEAL-EF--LQDSPDIIRISSMIVRLEDDLGTSSDELK-RGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNSAR 248 (299)
Q Consensus 173 ~e~~-~~--~~~~~~l~~~~~~i~rL~NDi~S~~~E~~-~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~~~ 248 (299)
..++ +. .+.+...++....++.++|||.||.||.. .|+.+|+|.+++.++|+|.++|++++.+++..+..++.+ .
T Consensus 198 ~~~~~e~~~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~~~~g~S~~eAl~~v~~~~~~~~~r~~~-~ 276 (374)
T 1yyq_A 198 KEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVA-V 276 (374)
T ss_dssp TTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred ccccchhhcchhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhehhcCCCCHHHHHHHHHHHHHHHHHHHHH-H
Confidence 4333 11 11245566777779999999999999998 599999999999999999999999999999999888866 3
Q ss_pred hCCCCCCcHHHHHHHHHHhh
Q 044462 249 FGNPPYLPDVFIGMAMNLVR 268 (299)
Q Consensus 249 l~~~~~~p~~~~~~~~n~~r 268 (299)
+.. . .|. .++.+-+..|
T Consensus 277 L~~-~-~~~-~l~al~~~ir 293 (374)
T 1yyq_A 277 FSD-K-DPQ-VMDTIECFMH 293 (374)
T ss_dssp HSS-S-CHH-HHHHHHHHHH
T ss_pred hcc-C-CHH-HHHHHHHHHh
Confidence 332 2 332 4444444444
No 17
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=93.30 E-value=0.96 Score=41.07 Aligned_cols=103 Identities=11% Similarity=0.090 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh-hcCCCchHHHhhccCchHHHHHHhh
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF-TANPITKEALEFLQDSPDIIRISSM 191 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~ 191 (299)
+...+.+++...+.+...+..|.... ||.++|++.-..-+|..+..++-.-+ ++. .+++..+. ..++-+..++
T Consensus 161 ~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag-a~~~~~~~---l~~~g~~lG~ 234 (360)
T 3lmd_A 161 TVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG-AAPEHIDA---LKNFGAAVGM 234 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHH
Confidence 67788889999999999999987665 99999998866666654433221111 122 34444433 3556677778
Q ss_pred HhhhccCCCCChh-----------hhhcCCCCchHHHHhhcC
Q 044462 192 IVRLEDDLGTSSD-----------ELKRGDVPKSIQCYMHET 222 (299)
Q Consensus 192 i~rL~NDi~S~~~-----------E~~~g~~~n~V~~ym~e~ 222 (299)
..-+.||+..+.- +...|.. +...+|..++
T Consensus 235 aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~-Tlp~l~al~~ 275 (360)
T 3lmd_A 235 IFQIVDDIIDIFSETHESGKTPGTDLREGVF-TLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHHC--------CCHHHHHTCC-CHHHHHHHHC
T ss_pred HHHHHHHHHHccCChhhhCCCchhHHhcCCc-hHHHHHHHHc
Confidence 8888888876642 2233443 6776776544
No 18
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=92.34 E-value=0.94 Score=39.93 Aligned_cols=143 Identities=11% Similarity=0.077 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh-hcCCCchHHHhhccCchHHHHHHhh
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF-TANPITKEALEFLQDSPDIIRISSM 191 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~ 191 (299)
+...+.++....+.|...+..|... .||.++|++.-..-+|.-+..++-.-+ ++. .+++..+. ..++-+..++
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag-~~~~~~~~---l~~~g~~lGl 201 (295)
T 3ipi_A 128 VIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISASIGAYTGG-AEEELAER---FSHFGNALGT 201 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHH
Confidence 5666777788888888888887654 489999998766666654322221111 122 34444433 3566777888
Q ss_pred HhhhccCCCCChhhh-----hcCCCCchHHHHhhcCCC--CHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCcH-HHHHHH
Q 044462 192 IVRLEDDLGTSSDEL-----KRGDVPKSIQCYMHETRV--SEDEAREHIRDLIAETWMKMNSARFGNPPYLPD-VFIGMA 263 (299)
Q Consensus 192 i~rL~NDi~S~~~E~-----~~g~~~n~V~~ym~e~g~--s~eeA~~~i~~~i~~~~k~l~~~~l~~~~~~p~-~~~~~~ 263 (299)
..-+.||+..+.-.. ..|. .+...+|..+.+- ..+.|.+.+.+.++++.+.+.. +|. +.++..
T Consensus 202 aFQI~DDilD~~~~~~gkd~~~gk-~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~~--------lp~~~~~~~L 272 (295)
T 3ipi_A 202 AYQIVDDILEFLEVVEGKESKFTS-ETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLET--------FRECPARDKL 272 (295)
T ss_dssp HHHHHHHHHHHHHHHHC--------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTT--------SCCSHHHHHH
T ss_pred HHHHHHHHHHhcCCccCCCcccCc-ccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHh--------CCCchHHHHH
Confidence 888889888775432 2333 3677777655431 1344444445555555544432 553 455556
Q ss_pred HHHhhhh
Q 044462 264 MNLVRMS 270 (299)
Q Consensus 264 ~n~~r~~ 270 (299)
.++++.+
T Consensus 273 ~~l~~~~ 279 (295)
T 3ipi_A 273 FQITDYI 279 (295)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 6666544
No 19
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=89.93 E-value=7.2 Score=34.79 Aligned_cols=86 Identities=12% Similarity=0.063 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh-hcCCCchHHHhhccCchHHHHHHhh
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF-TANPITKEALEFLQDSPDIIRISSM 191 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~ 191 (299)
+...+.++....+.|...+..|.. +..||.++|++.-..-+|..+..++-.-+ ++. .+++..+. ...+-...++
T Consensus 134 ~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~---l~~~g~~lG~ 208 (334)
T 3rmg_A 134 IIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQ-VGEEEVAF---ARLLGEYIGI 208 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHH
Confidence 677788889999999999888864 33589999998877666654332221111 222 34444433 3567778888
Q ss_pred HhhhccCCCCCh
Q 044462 192 IVRLEDDLGTSS 203 (299)
Q Consensus 192 i~rL~NDi~S~~ 203 (299)
..-+.||+..+-
T Consensus 209 aFQi~DD~ld~~ 220 (334)
T 3rmg_A 209 CFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHhccCC
Confidence 888999988875
No 20
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=89.91 E-value=3 Score=36.66 Aligned_cols=118 Identities=11% Similarity=0.055 Sum_probs=69.9
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHH--HHHhhcCCCchHHHhhccCchHHHHHH
Q 044462 114 IPYLKKAW--ADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLH--AYAFTANPITKEALEFLQDSPDIIRIS 189 (299)
Q Consensus 114 ~~~l~~~w--~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~--~~~~~g~~l~~e~~~~~~~~~~l~~~~ 189 (299)
...+.++. ...+.|...+..|...+..||.++|++.-..-+|..+..+. .-...| .+++. ..++-+..
T Consensus 137 ~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~~------l~~~g~~l 208 (297)
T 3m0g_A 137 VAALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRGP------LTAYATAL 208 (297)
T ss_dssp HHHHHHHHSTTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCHH------HHHHHHHH
T ss_pred HHHHHHHHhHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHHH------HHHHHHHH
Confidence 33444444 55778888888887667789999999876555554332221 111123 22221 35567888
Q ss_pred hhHhhhccCCCCChhhh-----------hcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 044462 190 SMIVRLEDDLGTSSDEL-----------KRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNS 246 (299)
Q Consensus 190 ~~i~rL~NDi~S~~~E~-----------~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 246 (299)
++..-+.||+..+.-+. ..|. .+.+.++ ..+.|.+...+.++++...+..
T Consensus 209 G~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK-~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 209 GLAFQIADDILDVEGNEEAAGKRLGKDAEAHK-ATFVSLL------GLAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp HHHHHHHTTCC----------------------CCHHHHH------CSSHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHhccCCHHHhCCCccchhhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999885432 2222 2555554 3567888888888888877654
No 21
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=89.04 E-value=11 Score=32.82 Aligned_cols=197 Identities=11% Similarity=0.043 Sum_probs=95.0
Q ss_pred chhHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHhh-cCcccc--ccCchhHHHHHHHHHhhHHHHHHHHHhcCCccc
Q 044462 36 YCRRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVER-WDATAT--EQLPYYMKLCFHALYNSVNEMGFIALRDQEVGM 112 (299)
Q Consensus 36 ~~Rl~~ak~~~l~~~~DD~~D~~~t~ee~~~~~~ai~r-wd~~~~--~~lp~~~~~~~~~l~~~~~ei~~~~~~~~~~~~ 112 (299)
..|-.+.-+-.|.-.+||+-|....+.+++.+.+.+++ .++... ...|. .++..++..++.+. +-.
T Consensus 38 ~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~~~~--------~l~- 106 (293)
T 3acx_A 38 DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVAQHK--------NIA- 106 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHHHHS--------CCC-
T ss_pred HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHHHHh--------CCC-
Confidence 34555556667777899999976544446555555543 111110 00022 35666666554432 323
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHhhcCCCchHHHhhccCchHHHHHHhhH
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQDSPDIIRISSMI 192 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i 192 (299)
++.+.+++.++... ......+|++|+...-..+.|.--.+.+-.+ |..-.++..+. ....+..
T Consensus 107 -----~~~~~~li~g~~~D---l~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~--g~~~~~~~~~~-------A~~lG~A 169 (293)
T 3acx_A 107 -----FQSFYNLIDTVYKD---QHFTMFETDAELFGYCYGVAGTVGEVLTPIL--SDHETHQTYDV-------ARRLGES 169 (293)
T ss_dssp -----HHHHHHHHHHHHHH---TTCCCCSSHHHHHHHHHHHTHHHHHHHHHHH--CSSCCHHHHHH-------HHHHHHH
T ss_pred -----HHHHHHHHHHHHHH---cCCCCCCCHHHHHHHHHHhhHHHHHHHHHHh--CCCCcHHHHHH-------HHHHHHH
Confidence 45566777777433 3344567888888877777764333333333 33211222221 2222222
Q ss_pred hhhccCCCCChhhhhcCCCCchHHHHhhcCCCCHHHHH---------HHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHH
Q 044462 193 VRLEDDLGTSSDELKRGDVPKSIQCYMHETRVSEDEAR---------EHIRDLIAETWMKMNSARFGNPPYLPDVFIGM 262 (299)
Q Consensus 193 ~rL~NDi~S~~~E~~~g~~~n~V~~ym~e~g~s~eeA~---------~~i~~~i~~~~k~l~~~~l~~~~~~p~~~~~~ 262 (299)
.-+.|=+........+|.+- .=.=.|.++|++.++-. +-+..++..+...+.+..-.... +|...+-.
T Consensus 170 lQltNilRDv~eD~~~gR~Y-LP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~-lp~~~r~~ 246 (293)
T 3acx_A 170 LQLINILRDVGEDFENERIY-FSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKV-FSIEAQPI 246 (293)
T ss_dssp HHHHHHHHCHHHHHHTTCCC-SCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGG-SCTTHHHH
T ss_pred HHHHHHHHHHHHHHhCCcEE-eCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHh-CCHHHHHH
Confidence 22333222233444566541 11123667899987622 23445555554444432221123 66544443
No 22
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=88.46 E-value=13 Score=33.23 Aligned_cols=104 Identities=10% Similarity=-0.015 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh-hcCCCchHHHhhccCchHHHHHHhh
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF-TANPITKEALEFLQDSPDIIRISSM 191 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~ 191 (299)
+...+.++....+.|...+..|.. +..||.++|++.-..-+|..+..++-.-+ ++ ..+++..+. ..++-+..++
T Consensus 140 ~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~---l~~~g~~lG~ 214 (341)
T 3mzv_A 140 VMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAATEVGGIIG-GAPEDQVQA---LFDYGDALGI 214 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHT-TCCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHc-CCCHHHHHH---HHHHHHHHHH
Confidence 677778888899999998888864 34689999998766666654322221111 12 234444333 3566777888
Q ss_pred HhhhccCCCCChhh-----------hhcCCCCchHHHHhhcC
Q 044462 192 IVRLEDDLGTSSDE-----------LKRGDVPKSIQCYMHET 222 (299)
Q Consensus 192 i~rL~NDi~S~~~E-----------~~~g~~~n~V~~ym~e~ 222 (299)
..-+.||+..+.-+ ...|.. +...+|..+.
T Consensus 215 aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~-Tlp~i~al~~ 255 (341)
T 3mzv_A 215 AFQIVDDLLDYGGKSAEIGKNTGDDFRERKL-TMPVIKAVAL 255 (341)
T ss_dssp HHHHHHHHHHC----------CCHHHHTTCC-CHHHHHHHHT
T ss_pred HHHHHHHHHhccCChhhcCCCCCcccccCch-hHHHHHHHHh
Confidence 88888888776432 234443 6666666544
No 23
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=87.95 E-value=12 Score=33.56 Aligned_cols=87 Identities=11% Similarity=-0.020 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh-hcCCCchHHHhhccCchHHHHHHhh
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF-TANPITKEALEFLQDSPDIIRISSM 191 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~ 191 (299)
+...+.++....+.|...+..|.. +..||.++|++.-..-+|..+..++-.-+ ++ ..+++..+. ..++-+..++
T Consensus 152 ~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~---l~~~g~~lG~ 226 (345)
T 3oyr_A 152 ALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAASEAGAVSA-GVDVAKSEA---LRDYGLNLGL 226 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHT-TCCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHc-CCCHHHHHH---HHHHHHHHHH
Confidence 677788888899999998888754 34589999998876666654332221111 22 234554443 3567788889
Q ss_pred HhhhccCCCCChh
Q 044462 192 IVRLEDDLGTSSD 204 (299)
Q Consensus 192 i~rL~NDi~S~~~ 204 (299)
..-+.||+..+.-
T Consensus 227 aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 227 AFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHTTC--
T ss_pred HHHHHHHHHhccC
Confidence 9999999988853
No 24
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=87.00 E-value=5.8 Score=34.97 Aligned_cols=133 Identities=11% Similarity=0.033 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh--hcCCCchHHHhhccCchHHHHHHhhHhhhccCCCC
Q 044462 124 QCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF--TANPITKEALEFLQDSPDIIRISSMIVRLEDDLGT 201 (299)
Q Consensus 124 ~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 201 (299)
.+.|...+..|... .||.++|...-..-+|..+..+ ...+ ++...+++..+. ..++-+..++..-+.||+..
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~-~~~ga~lag~~~~~~~~~---l~~~g~~lGlaFQI~DDilD 227 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEAS-VILGALASGRAEKGELKA---LQTYAQAIGLAFQVQDDILD 227 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 66777777777543 4899999988554455433222 1222 233225544443 35677788888889999988
Q ss_pred Chhhh-----------hcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHhhhh
Q 044462 202 SSDEL-----------KRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNSARFGNPPYLPDVFIGMAMNLVRMS 270 (299)
Q Consensus 202 ~~~E~-----------~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~~~l~~~~~~p~~~~~~~~n~~r~~ 270 (299)
+.-+. ..|. .+.+.+| ..+.|.+.+.+.++++.+.+.. +|.. ++....++..+
T Consensus 228 ~~~~~~~~GK~~g~Dl~egK-~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~--------l~~~-~~~L~~l~~~~ 291 (304)
T 3lsn_A 228 VESDTATLGKRQGADIARDK-PTYPALL------GLAAAKEYALELRDQALHALRP--------FDAA-AEPLRELARYI 291 (304)
T ss_dssp HHHHHHHC-------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTTT--------SCGG-GHHHHHHHHHH
T ss_pred ccCChHHhCCCcccHHhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHHHh--------Cchh-HHHHHHHHHHH
Confidence 75431 2222 2555554 4788888888888888776654 5542 44445555433
Q ss_pred hhhcccCCCC
Q 044462 271 QCMYLYGDGH 280 (299)
Q Consensus 271 ~~~Y~~~d~~ 280 (299)
..+...|+
T Consensus 292 --~~R~~~~~ 299 (304)
T 3lsn_A 292 --VERRSEGH 299 (304)
T ss_dssp --HC------
T ss_pred --HHhccccc
Confidence 34443443
No 25
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=86.49 E-value=16 Score=31.84 Aligned_cols=155 Identities=12% Similarity=0.189 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHhhcccccccCC-C-HHHHHHHHHHHhh-cCccccccCchhHHHHHHHHHhhHHHHHHHHHhcCCccch
Q 044462 37 CRRMSAMVNCLLTSIDDVYDVYG-T-LDELELFTDAVER-WDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGMI 113 (299)
Q Consensus 37 ~Rl~~ak~~~l~~~~DD~~D~~~-t-~ee~~~~~~ai~r-wd~~~~~~lp~~~~~~~~~l~~~~~ei~~~~~~~~~~~~~ 113 (299)
.|-.+.-+-.|.=.+||+-|+.. . ...++.+-+.+++ ..+. |. .+++.++..++.+. +-.
T Consensus 40 ~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~~g~-----~~--~pv~~al~~~~~~~--------~l~-- 102 (294)
T 4hd1_A 40 LRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAFAGE-----AT--TPAFRALQFTIATC--------NLP-- 102 (294)
T ss_dssp THHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHHHTC-----CC--SHHHHHHHHHHHHH--------TCC--
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC-----CC--CHHHHHHHHHHHHc--------CCC--
Confidence 34433455667778899999743 2 2344444444443 1111 21 25667776655543 212
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHhhcCCCchHHHhhccCchHHHHHHhhHh
Q 044462 114 IPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQDSPDIIRISSMIV 193 (299)
Q Consensus 114 ~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~ 193 (299)
++.+.+++.++..... ....+|++|+......+.|.--.+.+-. +|.. +++.... ....+...
T Consensus 103 ----~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~i--~g~~-~~~~~~~-------A~~lG~Al 165 (294)
T 4hd1_A 103 ----MEPFLRLIEANRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLGI--FGCL-DDERARL-------SDATCTAL 165 (294)
T ss_dssp ----SHHHHHHHHHHHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHHH--TTCC-SHHHHHH-------HHHHHHHH
T ss_pred ----HHHHHHHHHHHHhccc---cCCCCCHHHHHHHHHhccchHHHHHHHH--hCCC-CHHHHHH-------HHHHHHHH
Confidence 3345566777754433 3446788887777666666433323222 2432 2222221 12222233
Q ss_pred hhccCCCCChhhhhcCCC--CchHHHHhhcCCCCHHH
Q 044462 194 RLEDDLGTSSDELKRGDV--PKSIQCYMHETRVSEDE 228 (299)
Q Consensus 194 rL~NDi~S~~~E~~~g~~--~n~V~~ym~e~g~s~ee 228 (299)
-|.|=+.....+..+|.+ +. -.|.++|+|.++
T Consensus 166 QltNilRDv~eD~~~gR~YlP~---~~l~~~gv~~~d 199 (294)
T 4hd1_A 166 QVANHMQDIDRDLALGRIYVPR---ADLEQFGATLDD 199 (294)
T ss_dssp HHHHHHHTHHHHHHTTCBCSCH---HHHHTTTCCHHH
T ss_pred HHHHHHHhchhhhccCceeCCH---HHHHHcCCCHHH
Confidence 333323333344556653 32 247788999876
No 26
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=85.92 E-value=7.8 Score=34.45 Aligned_cols=112 Identities=7% Similarity=0.015 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh--hcCCCchHHHhhccCchHHHHHHhhHhhhccCC
Q 044462 122 ADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF--TANPITKEALEFLQDSPDIIRISSMIVRLEDDL 199 (299)
Q Consensus 122 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 199 (299)
...+.|...+..|... .||.++|+..-..-+|..+..+ ...+ ++...+++..+. ..++-+..++..-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~---l~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIRAS-VRLACLARPGLPAEQFDR---LDHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHHTTSTTCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4567777777776543 7899999988555555443222 2222 222245554443 355667777888888888
Q ss_pred CCChhh-----------hhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 044462 200 GTSSDE-----------LKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNS 246 (299)
Q Consensus 200 ~S~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 246 (299)
..+.-+ ..+|.. +.+.+| ..|.|.+.+.+.++++...+..
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 282 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLAG 282 (324)
T ss_dssp HHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTTT
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 766422 223332 566555 4788888888888888766543
No 27
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=84.38 E-value=8.2 Score=33.94 Aligned_cols=111 Identities=13% Similarity=0.035 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh--hcCCCchHHHhhccCchHHHHHHhhHhhhccCC
Q 044462 122 ADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF--TANPITKEALEFLQDSPDIIRISSMIVRLEDDL 199 (299)
Q Consensus 122 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 199 (299)
...+.|...+..|.. ..||.++|.+.-..-+|..+..+ ...+ ++ ..+++..+. ..++-+..++..-+.||+
T Consensus 156 ~~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~~-~~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DDi 228 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGALIEFA-LIAGGVLA-NQTEEVIGL---LTQFAHHYGLAFQIRDDL 228 (302)
T ss_dssp TTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 345667776666643 47899999987544455433222 1211 22 234444443 356677788888888888
Q ss_pred CCChhh-----------hhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 044462 200 GTSSDE-----------LKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNS 246 (299)
Q Consensus 200 ~S~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 246 (299)
..+.-+ ..+|.. +...++ ..+.|.+.+.+.++++.+.+..
T Consensus 229 lD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 229 LDATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HHTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 776422 222332 455544 5788889999999988887765
No 28
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=84.21 E-value=9 Score=33.36 Aligned_cols=120 Identities=10% Similarity=0.026 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHH--HHHhhcCCCchHHHhhccCchHHHHHHh
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLH--AYAFTANPITKEALEFLQDSPDIIRISS 190 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~--~~~~~g~~l~~e~~~~~~~~~~l~~~~~ 190 (299)
+...+.++....+.|...+..|......+|.++|++.-..-+|..+..++ .....|. +++. ..++-...+
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~--~~~~------l~~~g~~lG 206 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGX--DHTX------MXLLGEXFG 206 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC--CCHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCC--ChhH------HHHHHHHHH
Confidence 67777888889999999998887655478999999986666664432221 1111232 2221 345667778
Q ss_pred hHhhhccCCCCChhhh-hcCC-------CCchHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 044462 191 MIVRLEDDLGTSSDEL-KRGD-------VPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNS 246 (299)
Q Consensus 191 ~i~rL~NDi~S~~~E~-~~g~-------~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 246 (299)
+...+.||+..+.-+. ..|+ -.+...++ ..|.|.+.+.+.++++.+.+..
T Consensus 207 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 207 VAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888775432 2222 12444443 3678888888888888877766
No 29
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=83.77 E-value=5.6 Score=34.95 Aligned_cols=111 Identities=8% Similarity=0.020 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHH--HhhcCCCchHHHhhccCchHHHHHHhhHhhhccCC
Q 044462 122 ADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAY--AFTANPITKEALEFLQDSPDIIRISSMIVRLEDDL 199 (299)
Q Consensus 122 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 199 (299)
...+.+...+..|... .+|.++|++.-..-+|..+..++-. ...| .+++..+. ..++-...++..-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIAN--VDDTTKEH---LESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5577777777777543 7899999998766666543222211 1123 45554443 356777888888899999
Q ss_pred CCChhhh-----------hcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 044462 200 GTSSDEL-----------KRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNS 246 (299)
Q Consensus 200 ~S~~~E~-----------~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 246 (299)
..+.-+. ..|. .+...++- .+.|.+.+.+.++++.+.+..
T Consensus 221 lD~~~d~~~~GK~~g~Dl~~gK-~T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 221 LDCYGDEAKLGKKVGSDLENNK-STYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHCC--------------CCHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHhCCCcchHHHcCC-CcHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 8775322 2232 25555543 577888888888888877755
No 30
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=83.26 E-value=5.3 Score=35.18 Aligned_cols=112 Identities=10% Similarity=0.054 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh--hcCCCchHHHhhccCchHHHHHHhhHhhhccCC
Q 044462 122 ADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF--TANPITKEALEFLQDSPDIIRISSMIVRLEDDL 199 (299)
Q Consensus 122 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 199 (299)
...+.|...+..|. +..||.++|++.-..-+|..+..+ ...+ ++...+++..+. ..++-+..++..-+.||+
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~-~~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCA-IRLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 35677777777776 457899999988655555433222 2222 111123332222 345667777888888887
Q ss_pred CCChhh-----------hhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 044462 200 GTSSDE-----------LKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNS 246 (299)
Q Consensus 200 ~S~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 246 (299)
..+.-+ ..+|.. +.+.+| ..+.|.+.+.+.++++.+.+..
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNKS-TYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHHTTC---------------CC-CHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHHhCCCcchHHhcCCc-hHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 765422 222332 555554 3678888888888888877654
No 31
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=82.04 E-value=14 Score=33.00 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHH--HhhcCCCchHHHhhccCchHHHHHHh
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAY--AFTANPITKEALEFLQDSPDIIRISS 190 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~~ 190 (299)
+...+.++....+.|...+..|.... ..|.++|++.-..-+|..+..++-. ...| .+++..+. ..++-...+
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG 211 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGT--DNEEYIKA---LSSWGRNVG 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 56677788889999999999987643 3599999998766666543332221 1123 34554443 356777888
Q ss_pred hHhhhccCCCCChhh-----------hhcCCCCchHHHHhhcC
Q 044462 191 MIVRLEDDLGTSSDE-----------LKRGDVPKSIQCYMHET 222 (299)
Q Consensus 191 ~i~rL~NDi~S~~~E-----------~~~g~~~n~V~~ym~e~ 222 (299)
+..-+.||+..+.-+ ...|.. +...+|..++
T Consensus 212 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~-Tlp~i~al~~ 253 (342)
T 1wy0_A 212 IAFQIWDDVLDLIADEKKLGKPVGSDIRKGKK-TLIVAHFFEN 253 (342)
T ss_dssp HHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHhccCChhhhCCCchhHHhCCCC-cHHHHHHHHh
Confidence 888888988776422 223443 6666666543
No 32
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=81.69 E-value=9.6 Score=34.03 Aligned_cols=111 Identities=13% Similarity=0.066 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHH--HhhcCCCchHHHhhccCchHHHHHHhhHhhhccCC
Q 044462 122 ADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAY--AFTANPITKEALEFLQDSPDIIRISSMIVRLEDDL 199 (299)
Q Consensus 122 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 199 (299)
...+.|...+..|... .+|.++|++.-..-+|..+..+.-. ...| .+++..+. ..++-+..++..-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~---l~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQR---LRLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5577777777777654 6899999988776666543222211 1123 34454443 356677778888888888
Q ss_pred CCChhh-----------hhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 044462 200 GTSSDE-----------LKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNS 246 (299)
Q Consensus 200 ~S~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 246 (299)
..+.-+ ...|. .+...+| ..|.|.+.+.+.++++.+.|..
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK-~T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGK-GTLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHC-----------------C-CCHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHhcCCHHHhCCCcchHHhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 766422 22233 2555554 3678888888888888877655
No 33
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=80.62 E-value=15 Score=32.51 Aligned_cols=114 Identities=6% Similarity=0.008 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHhhcCC-CchHHHhhccCchHHHHHHhhHhhhccCCC
Q 044462 122 ADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANP-ITKEALEFLQDSPDIIRISSMIVRLEDDLG 200 (299)
Q Consensus 122 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~-l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 200 (299)
...+.|...+..|... ..||.++|.+.-..-+|..+..+.-...++.. .+++..+. ..++-+..++..-+.||+.
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~---l~~~g~~lGlaFQI~DDil 233 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSA---LRTYGKHIGLVFQMQDDYL 233 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3566777777776533 37899999987655555433222222223332 55555443 3566777788888888887
Q ss_pred CChhh-----------hhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 044462 201 TSSDE-----------LKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNS 246 (299)
Q Consensus 201 S~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 246 (299)
.+.-+ ...|.. +.+.+| ..+.|.+.+.+.++++.+.+..
T Consensus 234 D~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 283 (313)
T 3lom_A 234 DLYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSLRL 283 (313)
T ss_dssp HHHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTTTT
T ss_pred hccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 66422 222332 555443 4788888888888888766654
No 34
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=80.51 E-value=11 Score=33.41 Aligned_cols=111 Identities=9% Similarity=0.034 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh--hcCCCchHHHhhccCchHHHHHHhhHhhhccCCC
Q 044462 123 DQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF--TANPITKEALEFLQDSPDIIRISSMIVRLEDDLG 200 (299)
Q Consensus 123 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 200 (299)
..+.|...+..|. +..||.++|...-..-+|.-+..+ ...+ ++...+++..+. ..++-+..++..-+.||+.
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~---l~~~g~~lGlAFQI~DDiL 225 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKAS-VRMGALSTGQVKPEQLAK---LDAYAHAIGLAFQVQDDII 225 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4667777777765 345899999988655555433222 2222 222245554443 3566778888888888887
Q ss_pred CChhh-----------hhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 044462 201 TSSDE-----------LKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNS 246 (299)
Q Consensus 201 S~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 246 (299)
.+.-+ ...|. .+.+.+| ..|.|.+.+.+.++++.+.+..
T Consensus 226 D~~gd~~~~GK~~g~Dl~egK-~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 226 DLTSDTETLGKTQFSDAEANK-ATYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp HTC----------------CC-CCHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred hccCChHhhCCCcchHHhcCC-CcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 77432 22233 2566555 4688888888888888877765
No 35
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=80.13 E-value=20 Score=31.26 Aligned_cols=133 Identities=11% Similarity=0.041 Sum_probs=73.9
Q ss_pred HHHHHH--HHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh--hcCCCchHHHhhccCchHHHHHHh
Q 044462 115 PYLKKA--WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF--TANPITKEALEFLQDSPDIIRISS 190 (299)
Q Consensus 115 ~~l~~~--w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~ 190 (299)
..+.++ ....+.+...+..|.. ..||.++|...-..-+|..+..++ ..+ ++ ..+++..+. ..++-+..+
T Consensus 136 ~~l~~~~g~~~~~~GQ~lDl~~~~--~~~~~~~y~~i~~~KTg~L~~~a~-~~ga~la-ga~~~~~~~---l~~~g~~lG 208 (291)
T 3npk_A 136 KTLAFNAGLNGMVIGQAIDCFFED--KRLSLNELEFLHTHKTARLIAAAL-KMGCEIC-ELNNEESNQ---IYKLGLKLG 208 (291)
T ss_dssp HHHHHHHSTTTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhccC--CCCCHHHHHHHHHcccHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHH
Confidence 334444 4556677666666643 468999999886555554432222 122 22 234444333 356677778
Q ss_pred hHhhhccCCCCChhhh-hcCCC-------CchHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHH
Q 044462 191 MIVRLEDDLGTSSDEL-KRGDV-------PKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNSARFGNPPYLPDVFIGM 262 (299)
Q Consensus 191 ~i~rL~NDi~S~~~E~-~~g~~-------~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~~~l~~~~~~p~~~~~~ 262 (299)
+..-+.||+..+.-+. ..|+. .+.+.++ ..+.|.+..+++++++.+.+.. +|....+.
T Consensus 209 laFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~~--------~~~~~~~~ 274 (291)
T 3npk_A 209 LIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLEK--------LNEKLAQM 274 (291)
T ss_dssp HHHHHHHHHHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHHT--------SCHHHHHH
T ss_pred HHHHHHHHHHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHHH--------hchhHHHH
Confidence 8888888887664321 12221 2444443 4677777788888887776654 55543444
Q ss_pred HHHHhh
Q 044462 263 AMNLVR 268 (299)
Q Consensus 263 ~~n~~r 268 (299)
.-.+++
T Consensus 275 l~~la~ 280 (291)
T 3npk_A 275 IQNLII 280 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 445554
No 36
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=80.01 E-value=27 Score=31.01 Aligned_cols=103 Identities=15% Similarity=0.045 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh--hcCCCchHHHhhccCchHHHHHHh
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF--TANPITKEALEFLQDSPDIIRISS 190 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~ 190 (299)
+...+.+.....+.+.+.+..|.. +..||.++|++.-..-+|..+..+ ...+ ++. .+++..+. ..++-+..+
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~-~~~ga~lag-~~~~~~~~---l~~~g~~lG 217 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALS-CYQGAQLAG-APQSVIDR---TRDIGIAIG 217 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHH-HHHHHHHTT-CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC-CCHHHHHH---HHHHHHHHH
Confidence 566677888888888888777653 346899999987655555543222 2222 222 34444433 345556666
Q ss_pred hHhhhccCCCCCh-------h----hhhcCCCCchHHHHhhcC
Q 044462 191 MIVRLEDDLGTSS-------D----ELKRGDVPKSIQCYMHET 222 (299)
Q Consensus 191 ~i~rL~NDi~S~~-------~----E~~~g~~~n~V~~ym~e~ 222 (299)
+..-+.||+..+. | +...|.. +...+|..++
T Consensus 218 ~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~~ 259 (334)
T 3pko_A 218 CAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLSH 259 (334)
T ss_dssp HHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGGG
T ss_pred HHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHHh
Confidence 7777777765543 2 3445554 6766666553
No 37
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=77.65 E-value=16 Score=32.17 Aligned_cols=111 Identities=6% Similarity=-0.090 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh-hcCCCchHHHhhccCchHHHHHHhhHhhhccCCCC
Q 044462 123 DQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF-TANPITKEALEFLQDSPDIIRISSMIVRLEDDLGT 201 (299)
Q Consensus 123 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 201 (299)
..+.|...+..|. +..+|.++|...-..-+|..+..++..-+ ++. .+++..+. ..++-...++..-+.||+..
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~lag-a~~~~~~~---l~~~g~~lGlaFQI~DDiLD 229 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQ-APEAQWPA---YLQFADAFGLAFQIYDDILD 229 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCGGGHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 4566666666664 34689999998855555543322221111 222 24443332 35566777788888888876
Q ss_pred Chh-----------hhhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 044462 202 SSD-----------ELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNS 246 (299)
Q Consensus 202 ~~~-----------E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 246 (299)
+.- +...|.. +.+.+| ..+.|.+..+++++++.+.+..
T Consensus 230 ~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 230 VVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 632 2223332 555554 4678888888888888877664
No 38
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=76.40 E-value=17 Score=32.70 Aligned_cols=106 Identities=8% Similarity=0.051 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhc----------CCC-CCCHHHHHHhhhhhcchhHHHHHHHHh-hcCCCchHHHhhcc
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYN----------SGY-IPTLQEYMENAWISVTAPVMLLHAYAF-TANPITKEALEFLQ 180 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~----------~~~-~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~ 180 (299)
+...+.++....+.|...+..|.. .+. .||.++|++.-..-+|..+..++-.-+ ++ ..+++..+.
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~-- 209 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSV-SDDRGLAEA-- 209 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHH-CCCHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHc-CCCHHHHHH--
Confidence 567788888899999999999873 223 679999998866666654332221111 11 134444333
Q ss_pred CchHHHHHHhhHhhhccCCCCChh-----------hhhcCCCCchHHHHhhcC
Q 044462 181 DSPDIIRISSMIVRLEDDLGTSSD-----------ELKRGDVPKSIQCYMHET 222 (299)
Q Consensus 181 ~~~~l~~~~~~i~rL~NDi~S~~~-----------E~~~g~~~n~V~~ym~e~ 222 (299)
..++-+..++..-+.||+..+-- +...|...+...++..++
T Consensus 210 -l~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~ 261 (358)
T 4dhd_A 210 -AWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSH 261 (358)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHh
Confidence 34566777777777888766532 233344325666655544
No 39
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=75.77 E-value=18 Score=32.12 Aligned_cols=112 Identities=9% Similarity=0.007 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh--hcCCCchHHHhhccCchHHHHHHhhHhhhccCC
Q 044462 122 ADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF--TANPITKEALEFLQDSPDIIRISSMIVRLEDDL 199 (299)
Q Consensus 122 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 199 (299)
...+.|...+..|... ..||.++|.+.-..-+|..+..+ ...+ ++ ..+++..+. ..++-+..++..-+.||+
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a-~~~Ga~la-ga~~~~~~~---l~~~g~~lGlAFQI~DDi 253 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKAS-IMSGAVLA-EASEGDIKK---LEGFGYKLGLAFQIKDDI 253 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3567777777777543 36899999988544455433222 2222 22 234444433 356667777888888887
Q ss_pred CCChhh-----------hhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 044462 200 GTSSDE-----------LKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNS 246 (299)
Q Consensus 200 ~S~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 246 (299)
..+.-+ ..+|.. +...++ ..+.|.+.+.+.++++.+.+..
T Consensus 254 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 254 LDVVGNAKDLGKNVHKDQESNKN-NYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCcchHhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 765321 222322 455544 4688899899999988887765
No 40
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=71.41 E-value=22 Score=31.67 Aligned_cols=86 Identities=13% Similarity=0.065 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh-hcCCCchHHHhhccCchHHHHHHhh
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF-TANPITKEALEFLQDSPDIIRISSM 191 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~ 191 (299)
+...+.++....+.|...+..|... ..+|.++|++.-..-+|..+..++-.-+ ++ ..+++..+. ..++-+..++
T Consensus 154 ~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~---l~~~g~~lG~ 228 (348)
T 3apz_A 154 VVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSCKAVAVLT-GQTAEVAVL---AFEYGRNLGL 228 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTT-TCCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHc-CcCHHHHHH---HHHHHHHHHH
Confidence 5677778888888888877766432 3579999998866555544332221111 11 134444433 3456667777
Q ss_pred HhhhccCCCCCh
Q 044462 192 IVRLEDDLGTSS 203 (299)
Q Consensus 192 i~rL~NDi~S~~ 203 (299)
..-+.||+..+-
T Consensus 229 aFQi~DD~lD~~ 240 (348)
T 3apz_A 229 AFQLIDDILDFT 240 (348)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 777888877764
No 41
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=70.87 E-value=18 Score=31.79 Aligned_cols=114 Identities=9% Similarity=0.050 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh-hcCCCchHHH-hhccCchHHHHHHhhHhhhccC
Q 044462 121 WADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF-TANPITKEAL-EFLQDSPDIIRISSMIVRLEDD 198 (299)
Q Consensus 121 w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~-~~~~~~~~l~~~~~~i~rL~ND 198 (299)
....+.|...+..|. +..||.++|...-..-+|..+..++-.-+ ++. .+++.. +. ..++-+..++..-+.||
T Consensus 158 ~~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~lga~lag-a~~~~~~~~---l~~~g~~lGlaFQI~DD 231 (311)
T 3llw_A 158 IKGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASLIMGLVASG-IKDEELFKW---LQAFGLKMGLCFQVLDD 231 (311)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC-CCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 345667777776765 56789999998855555543322221111 222 233333 33 35567778888888888
Q ss_pred CCCChhh-hhcCCC-------CchHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 044462 199 LGTSSDE-LKRGDV-------PKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNS 246 (299)
Q Consensus 199 i~S~~~E-~~~g~~-------~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 246 (299)
+..+.-+ ...|+. .+.+.++ ..+.|....+++++++.+.+..
T Consensus 232 iLD~~gd~~~~GK~~g~~~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 232 IIDVTQDEEESGKTTHLDSAKNSFVNLL------GLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHHC-------------CCSCHHHHH------CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhccCChHHHCcccccccCcchHHHHH------HHHHHHHHHHHHHHHHHHHhhh
Confidence 8776533 222222 2344333 4678888888888888877654
No 42
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=67.42 E-value=28 Score=31.15 Aligned_cols=86 Identities=10% Similarity=-0.062 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh-hcCCCchHHHhhccCchHHHHHHhh
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF-TANPITKEALEFLQDSPDIIRISSM 191 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~ 191 (299)
+...+.++....+.+...+..|... ..||.++|++.-..-+|..+..++-.-+ ++ ..+++..+. ...+-+..++
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~---l~~~g~~lG~ 218 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACASSIGAVLG-GADERTADT---LEKYGYHLGL 218 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHT-TCCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHHHHHHHHc-CCCHHHHHH---HHHHHHHHHH
Confidence 5667788888999999988888654 3689999998866666654432221111 12 234554443 3566778888
Q ss_pred HhhhccCCCCCh
Q 044462 192 IVRLEDDLGTSS 203 (299)
Q Consensus 192 i~rL~NDi~S~~ 203 (299)
..-+.||+..+-
T Consensus 219 aFQi~DD~ld~~ 230 (352)
T 3nf2_A 219 AFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 888888887663
No 43
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=67.25 E-value=8.3 Score=33.69 Aligned_cols=109 Identities=12% Similarity=0.002 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhcCC-CCCCHHHHHHhhhhhcchhHHHHHHHHh--hcCCCchHHHhhccCchHHHHHHhhHhhhccCC
Q 044462 123 DQCKSYLVEAKWYNSG-YIPTLQEYMENAWISVTAPVMLLHAYAF--TANPITKEALEFLQDSPDIIRISSMIVRLEDDL 199 (299)
Q Consensus 123 ~~~~~~~~Ea~w~~~~-~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 199 (299)
..+.|...+..|...+ ..+|.++|...-..-+|..+..+ ...+ ++. .+++..+. ..++-...++..-+.||+
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a-~~~ga~lag-~~~~~~~~---l~~~g~~lG~aFQI~DDi 235 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEAS-AVLGGIIGG-GSDEEIER---LRKFARCIGLLFQVVDDI 235 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHH-HHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3566666666664321 24688999887544444432222 1111 222 34554443 356777888888899998
Q ss_pred CCChhhhhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 044462 200 GTSSDELKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNS 246 (299)
Q Consensus 200 ~S~~~E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 246 (299)
..+..+. ..+...++ ..|.|.+.+.+.++++.+.+..
T Consensus 236 LD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 236 LDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8775433 23555554 4678888888888888776654
No 44
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=67.18 E-value=29 Score=30.23 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHhhcC--CCchHHHhhccCchHHHHHHhhHhhhccCC
Q 044462 122 ADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTAN--PITKEALEFLQDSPDIIRISSMIVRLEDDL 199 (299)
Q Consensus 122 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~--~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 199 (299)
...+.|...+..|... .+|.++|++.-..-+|..+..+ ...+.-. ..+++..+. ..++-+..++..-+.||+
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~l~ag~~~~~~~~---l~~~g~~lG~aFQi~DD~ 225 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAA-VRLGALSAGDKGRRALPV---LDKYAESIGLAFQVQDDI 225 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHhCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4567777777777543 7899999988665565543222 2222101 123443333 356677888888888988
Q ss_pred CCChhh-----------hhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 044462 200 GTSSDE-----------LKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNS 246 (299)
Q Consensus 200 ~S~~~E-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~ 246 (299)
..+.-+ ...|.. +...+| ..+.|.+.+++.++++.+.+..
T Consensus 226 lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 226 LDVVGDTATLGKRQGADQQLGKS-TYPALL------GLEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHSCHHHHSSCTTHHHHHTCC-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHHcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 776432 222332 555554 3577888888888888877766
No 45
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=66.03 E-value=30 Score=30.54 Aligned_cols=102 Identities=10% Similarity=0.037 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCHHHHHHhhhhhcchh-HHHHHH--HHhhcCCCchHHHhhccCchHHHHH
Q 044462 113 IIPYLKKAWADQCKSYLVEAKW-YNSGYIPTLQEYMENAWISVTAP-VMLLHA--YAFTANPITKEALEFLQDSPDIIRI 188 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w-~~~~~~Ps~eEYl~~~~~s~g~~-~~~~~~--~~~~g~~l~~e~~~~~~~~~~l~~~ 188 (299)
+...+.++....+.|...+..| ...+..||.++|++.-..-+|.. +..++- ....|. +++.. ..++-..
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~--~~~~~-----l~~~g~~ 203 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK--TPPAA-----YEEGGLR 203 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC--CCCHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC--CHHHH-----HHHHHHH
Confidence 5777788889999999999998 65535689999998876666654 322221 112232 22211 2345566
Q ss_pred HhhHhhhccCCCCCh----------hhhhcCCCCchHHHHhhcC
Q 044462 189 SSMIVRLEDDLGTSS----------DELKRGDVPKSIQCYMHET 222 (299)
Q Consensus 189 ~~~i~rL~NDi~S~~----------~E~~~g~~~n~V~~ym~e~ 222 (299)
.++..-+.||+..+. .+...|.. +...+|..++
T Consensus 204 lG~aFQi~DD~ld~~~d~~~GK~~g~Dl~egK~-T~p~i~al~~ 246 (330)
T 1wmw_A 204 LGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKR-TLILLRFLEE 246 (330)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSSSTTHHHHHTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHccCcccCCcccCCCcCchhhCCCC-CHHHHHHHHh
Confidence 666677777766553 22334443 6666665544
No 46
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=56.54 E-value=64 Score=29.05 Aligned_cols=104 Identities=8% Similarity=0.060 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH-HHHHHhhhhhcchh-HH--HHHHHHhhcCCCchHH--HhhccCchHHH
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTL-QEYMENAWISVTAP-VM--LLHAYAFTANPITKEA--LEFLQDSPDII 186 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~-eEYl~~~~~s~g~~-~~--~~~~~~~~g~~l~~e~--~~~~~~~~~l~ 186 (299)
+...+.++....+.|...+..|...+..+++ ++|++.-..-+|.. +. +.+.....|. +++. .+ ...++-
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~--~~~~~~~~---~l~~~g 243 (368)
T 2her_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEI--QVSSAQLN---LIEAIL 243 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCC--CCCCSSTT---THHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCC--ChhHHHHH---HHHHHH
Confidence 5677788888999999998888776634455 99998866555554 21 1222222332 2221 22 235566
Q ss_pred HHHhhHhhhccCCCCCh------hhhhcCCCCchHHHHhhcC
Q 044462 187 RISSMIVRLEDDLGTSS------DELKRGDVPKSIQCYMHET 222 (299)
Q Consensus 187 ~~~~~i~rL~NDi~S~~------~E~~~g~~~n~V~~ym~e~ 222 (299)
...++..-+.||+..+- .+...|.. +...++..++
T Consensus 244 ~~lG~aFQI~DD~LD~~~~GK~g~Dl~egK~-T~pvi~al~~ 284 (368)
T 2her_A 244 YKLGEFYQVHNDVSDYLFNDSNADDICRFKL-TWPLQKSFEI 284 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSSCTTTTTCC-CHHHHSSTTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCChHhCCcc-cHHHHHHHHh
Confidence 77778888888876654 12233332 5555555444
No 47
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=55.46 E-value=25 Score=30.27 Aligned_cols=70 Identities=6% Similarity=-0.146 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh-hcCCCchHHHhhccCchHHHHHHhhHhhhccCC
Q 044462 124 QCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF-TANPITKEALEFLQDSPDIIRISSMIVRLEDDL 199 (299)
Q Consensus 124 ~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 199 (299)
.+.+...+..|... .||+++|...-..-+|..+..++-.-+ ++. .+++..+. ..++-+..++..-+.||+
T Consensus 151 ~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a~~lGailag-a~~~~~~~---l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 151 MISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACGAACGAILGG-AAEEEIQK---LRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence 45666666566443 789999998655555544322221111 222 34454443 456778888999999997
No 48
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=55.29 E-value=1.1e+02 Score=26.82 Aligned_cols=100 Identities=13% Similarity=0.010 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHH--HHHhhcCCCchHHHhhccCchHHHHHHh
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLH--AYAFTANPITKEALEFLQDSPDIIRISS 190 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~--~~~~~g~~l~~e~~~~~~~~~~l~~~~~ 190 (299)
+...+.++....+.|...+..|... ..||.++|++.-..-+|..+..++ .....|.. .+ ...++-+..+
T Consensus 123 ~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~~------~l~~~g~~lG 193 (315)
T 3tc1_A 123 IAQALSNAVLRLSRGEIEDVFVGEC-FNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD--AK------IYADFGLNFG 193 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC--HH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC--HH------HHHHHHHHHH
Confidence 5667788888999999998888653 468999999876655554432222 11122333 22 1345667777
Q ss_pred hHhhhccCCCCChhh-----------hhcCCCCchHHHHhhcC
Q 044462 191 MIVRLEDDLGTSSDE-----------LKRGDVPKSIQCYMHET 222 (299)
Q Consensus 191 ~i~rL~NDi~S~~~E-----------~~~g~~~n~V~~ym~e~ 222 (299)
+..-+.||+..+--+ ...|. .+...+|..++
T Consensus 194 ~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK-~T~p~i~al~~ 235 (315)
T 3tc1_A 194 MAFQIIDDLLDITQDAKTLGKPNFSDFKEGK-TTLPYLLLYEK 235 (315)
T ss_dssp HHHHHHHHHHTTSCCTTCCCCCCCCTGGGTC-CCHHHHHHHTT
T ss_pred HHHHHHHHHhcccCCHHHhCCChhhHHHcCC-hhHHHHHHHHh
Confidence 888888887776422 22333 26666666655
No 49
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=51.59 E-value=62 Score=28.88 Aligned_cols=106 Identities=7% Similarity=-0.008 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh-----------cCCC----CCCHHHHHHhhhhhcchh-HHHH--HHHHhhcCCCchH
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWY-----------NSGY----IPTLQEYMENAWISVTAP-VMLL--HAYAFTANPITKE 174 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~-----------~~~~----~Ps~eEYl~~~~~s~g~~-~~~~--~~~~~~g~~l~~e 174 (299)
+...+.+.....+.|...+..|. ..|. .+|.++|++.-..-+|.. +..+ +.....| ..+++
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag-~~~~~ 230 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSE-AAASV 230 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcC-CCCHH
Confidence 57777888889999999999887 3233 489999998876666654 2222 2222223 12333
Q ss_pred HHhhccCchHHHHHHhhHhhhccCCCCChhh----------hhcCCCCchHHHHhhcCC
Q 044462 175 ALEFLQDSPDIIRISSMIVRLEDDLGTSSDE----------LKRGDVPKSIQCYMHETR 223 (299)
Q Consensus 175 ~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E----------~~~g~~~n~V~~ym~e~g 223 (299)
..+. ..++-...++..-+.||+..+.-+ ...|. .+...++..++.
T Consensus 231 ~~~~---l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK-~T~p~l~al~~~ 285 (362)
T 1yhl_A 231 EMNL---VERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAK-CSWLAVTFLGKA 285 (362)
T ss_dssp CHHH---HHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTC-CCHHHHHHHTTC
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCC-chHHHHHHHHhC
Confidence 3222 355667778888888888776422 22333 366666665543
No 50
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=51.47 E-value=1.1e+02 Score=26.58 Aligned_cols=83 Identities=11% Similarity=0.161 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh-hcCCCchHHHhhccCchHHHHHHhh
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF-TANPITKEALEFLQDSPDIIRISSM 191 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~ 191 (299)
+...+.+.....+.|...+..|+.....||.++|++.-..-+|..+.++.-.-+ .+. .++ ...++-...++
T Consensus 112 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~~lG~ 183 (301)
T 2q80_A 112 AVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLNTLGL 183 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHHHHHH
Confidence 566788888999999999999987666899999998877666654322222211 111 121 24556677777
Q ss_pred HhhhccCCCCCh
Q 044462 192 IVRLEDDLGTSS 203 (299)
Q Consensus 192 i~rL~NDi~S~~ 203 (299)
..-+.||+..+.
T Consensus 184 aFQi~DD~ld~~ 195 (301)
T 2q80_A 184 FFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhc
Confidence 788888876653
No 51
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=46.73 E-value=67 Score=28.43 Aligned_cols=86 Identities=13% Similarity=0.136 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHhhhhhcchhHHHHHHHHh-hcCCCchHHHhhccCchHHHHHH
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSG--YIPTLQEYMENAWISVTAPVMLLHAYAF-TANPITKEALEFLQDSPDIIRIS 189 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~--~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~ 189 (299)
+...+.+.....+.|...+..|+... ..||.++|++.-..-+|..+.+++-.-+ ++. .+++ . ....++-+..
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~-~---~~l~~~g~~l 206 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP-SSHH-G---HSLVPFINLL 206 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC-C----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CcHH-H---HHHHHHHHHH
Confidence 35556777888889999999988755 5789999999876666654322221111 111 1221 1 2356777888
Q ss_pred hhHhhhccCCCCCh
Q 044462 190 SMIVRLEDDLGTSS 203 (299)
Q Consensus 190 ~~i~rL~NDi~S~~ 203 (299)
++..-+.||+..+-
T Consensus 207 G~aFQi~DD~ld~~ 220 (340)
T 2e8v_A 207 GIIYQIRDDYLNLK 220 (340)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 88888888887664
No 52
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=45.91 E-value=91 Score=27.31 Aligned_cols=87 Identities=8% Similarity=0.033 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHhhcCCCchHHHhhccCchHHHHHHhhH
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQDSPDIIRISSMI 192 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i 192 (299)
+...+.++....+.|...+..|... ..||.++|++.-..-+|..+..++-.-+.--..+++..+. ..++-...++.
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~a 206 (325)
T 3aqb_B 131 FHQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYH---IKQFGHCIGMS 206 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHHH
Confidence 6677788888999999998888653 3589999998877666654332222211111234554443 35667778888
Q ss_pred hhhccCCCCCh
Q 044462 193 VRLEDDLGTSS 203 (299)
Q Consensus 193 ~rL~NDi~S~~ 203 (299)
.-+.||+..+.
T Consensus 207 fQi~DD~ld~~ 217 (325)
T 3aqb_B 207 YQIIDDILDYT 217 (325)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 88888887764
No 53
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=44.96 E-value=20 Score=24.59 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 044462 222 TRVSEDEAREHIRDLIAETWMKM 244 (299)
Q Consensus 222 ~g~s~eeA~~~i~~~i~~~~k~l 244 (299)
||++.+||...+.+.+++++.++
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999888643
No 54
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=42.27 E-value=74 Score=27.48 Aligned_cols=117 Identities=10% Similarity=0.090 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHH-hhcCCCchHHHhhccCchHHHHHHhh
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYA-FTANPITKEALEFLQDSPDIIRISSM 191 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~-~~g~~l~~e~~~~~~~~~~l~~~~~~ 191 (299)
+...+.++....+.|...+..+ .++|++.-..-+|..+..++..- .++ .+++..+. ..++-+..++
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~~~ga~la--~~~~~~~~---l~~~g~~lG~ 202 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLSTVLSAYAS--KHYNTKQQ---MLDVGKYLGI 202 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHHHHHHHHT--TCGGGHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHHHHHHHHc--CCHHHHHH---HHHHHHHHHH
Confidence 5666777777777777666553 68888876655555432222211 134 44444333 3456677777
Q ss_pred HhhhccCCCCChhh----hhcCCCCchHHHHhhcCCCCHHHHH-HHHHHHHHHHHHHHhh
Q 044462 192 IVRLEDDLGTSSDE----LKRGDVPKSIQCYMHETRVSEDEAR-EHIRDLIAETWMKMNS 246 (299)
Q Consensus 192 i~rL~NDi~S~~~E----~~~g~~~n~V~~ym~e~g~s~eeA~-~~i~~~i~~~~k~l~~ 246 (299)
..-+.||+..+.-+ ...| ..+...+| .+ .+.++|+ ..+.+.++++.+.+..
T Consensus 203 aFQi~DDilD~~~~~K~dl~~g-k~Tlp~l~-~~--~g~~~a~~~~a~~~~~~A~~~L~~ 258 (289)
T 2azj_A 203 IYQVIDDFVDYKTKKVEEIDGS-AKQLFKYY-RE--GKLEEYVRSVYLEYKQKYDELISN 258 (289)
T ss_dssp HHHHHHHHHHHTTSCTTTCCTT-GGGGHHHH-TT--TCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhcCCCChhhhcC-cccHHHHH-Hc--CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 77888887665322 1222 23666666 32 2466773 4466666666655544
No 55
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=35.39 E-value=1.4e+02 Score=26.72 Aligned_cols=87 Identities=11% Similarity=-0.051 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHhhhhhcchh-HHHH--HHHHhhcCCCchHHHhhccCchHH
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGY----IPTLQEYMENAWISVTAP-VMLL--HAYAFTANPITKEALEFLQDSPDI 185 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~----~Ps~eEYl~~~~~s~g~~-~~~~--~~~~~~g~~l~~e~~~~~~~~~~l 185 (299)
+...+.+.....+.|...+..|...+. .+|+++|+..-..-+|.. +..+ +..+ ++...+++..+. ..++
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~-lag~a~~~~~~~---l~~~ 252 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMY-MAGIDGEKEHAN---AKKI 252 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHH-HTTCCCHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHH-HcCCCcHHHHHH---HHHH
Confidence 567777888888999999988876654 389999998877666654 2222 2222 233234454443 3567
Q ss_pred HHHHhhHhhhccCCCCCh
Q 044462 186 IRISSMIVRLEDDLGTSS 203 (299)
Q Consensus 186 ~~~~~~i~rL~NDi~S~~ 203 (299)
-...++..-+.||+..+-
T Consensus 253 g~~lG~aFQI~DDiLD~~ 270 (374)
T 2qis_A 253 LLEMGEFFQIQDDYLDLF 270 (374)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 778888888888887764
No 56
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=33.38 E-value=1.6e+02 Score=26.33 Aligned_cols=87 Identities=9% Similarity=-0.039 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHhhhhhcchh-HH--HHHHHHhhcCCCchHHHhhccCchHH
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGY----IPTLQEYMENAWISVTAP-VM--LLHAYAFTANPITKEALEFLQDSPDI 185 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~----~Ps~eEYl~~~~~s~g~~-~~--~~~~~~~~g~~l~~e~~~~~~~~~~l 185 (299)
+...+.+.....+.|...+..|...+. .+|.++|+..-..-+|.. +. +.+..+..|. .+++..+. ..++
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~-~~~~~~~~---l~~~ 245 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI-DSKEEHEN---AKAI 245 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTC-CCHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCC-ccHHHHHH---HHHH
Confidence 567777888888999999998876553 579999998876666654 22 1222222231 34444443 3566
Q ss_pred HHHHhhHhhhccCCCCCh
Q 044462 186 IRISSMIVRLEDDLGTSS 203 (299)
Q Consensus 186 ~~~~~~i~rL~NDi~S~~ 203 (299)
-...++..-+.||+..+-
T Consensus 246 g~~lG~aFQI~DD~LD~~ 263 (367)
T 1uby_A 246 LLEMGEYFQIQDDYLDCF 263 (367)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 677778888888887664
No 57
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=33.22 E-value=38 Score=23.39 Aligned_cols=27 Identities=15% Similarity=0.009 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 044462 222 TRVSEDEAREHIRDLIAETWMKMNSAR 248 (299)
Q Consensus 222 ~g~s~eeA~~~i~~~i~~~~k~l~~~~ 248 (299)
||++.+||...+.+.++++...=.+.+
T Consensus 10 hG~~~~eA~~~l~~fl~~a~~~g~~~v 36 (83)
T 2zqe_A 10 RGLTVAEALLEVDQALEEARALGLSTL 36 (83)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEE
Confidence 699999999999999998885433333
No 58
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=31.39 E-value=36 Score=30.58 Aligned_cols=88 Identities=6% Similarity=0.092 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CHHHHHHhhhhhcchh---HHHHHHHHhhcCCCchHHHhhccCchHHHHH
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGYIP-TLQEYMENAWISVTAP---VMLLHAYAFTANPITKEALEFLQDSPDIIRI 188 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~P-s~eEYl~~~~~s~g~~---~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~ 188 (299)
+...+.++....+.|...+..|...+..+ |.++|++.-..-+|.. ..+.......|...+++..+. ..++-..
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~---l~~~g~~ 245 (368)
T 2q58_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNL---IEAILYK 245 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTT---HHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHH---HHHHHHH
Confidence 45555666667777887777887766654 7889998754444432 222223333444444443332 4566777
Q ss_pred HhhHhhhccCCCCCh
Q 044462 189 SSMIVRLEDDLGTSS 203 (299)
Q Consensus 189 ~~~i~rL~NDi~S~~ 203 (299)
.++..-+.||+..+-
T Consensus 246 lG~aFQI~DDiLD~~ 260 (368)
T 2q58_A 246 LGEFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc
Confidence 788888888887653
No 59
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=30.13 E-value=29 Score=25.19 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=19.8
Q ss_pred CchHHHHhhcCCCCHHHHHHHHHH
Q 044462 212 PKSIQCYMHETRVSEDEAREHIRD 235 (299)
Q Consensus 212 ~n~V~~ym~e~g~s~eeA~~~i~~ 235 (299)
.--|.+.|.|.|+|.++|++.+.+
T Consensus 66 ~edi~lv~~q~~vs~~~A~~aL~~ 89 (102)
T 1tr8_A 66 EDDIELVMNQTGASREDATRALQE 89 (102)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 355889999999999999887654
No 60
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=29.89 E-value=43 Score=23.59 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 044462 222 TRVSEDEAREHIRDLIAETWM 242 (299)
Q Consensus 222 ~g~s~eeA~~~i~~~i~~~~k 242 (299)
||++.+||+..+.+.++++..
T Consensus 14 HGl~v~eA~~~L~~~L~~~~~ 34 (96)
T 2d9i_A 14 HGLHVDEALEHLMRVLEKKTE 34 (96)
T ss_dssp TTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 799999999999999998764
No 61
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=29.41 E-value=1e+02 Score=26.74 Aligned_cols=81 Identities=14% Similarity=-0.029 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHH--HHHhhcCCCchHHHhhccCchHHHHHHh
Q 044462 113 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLH--AYAFTANPITKEALEFLQDSPDIIRISS 190 (299)
Q Consensus 113 ~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~--~~~~~g~~l~~e~~~~~~~~~~l~~~~~ 190 (299)
+...+.++....+.|...+..|.... ||.++|++.-..-+|..+..++ .....|..- +. ..++-...+
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~--~~------l~~~g~~lG 197 (299)
T 1v4e_A 128 LRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGELG--ED------LYNLGVTIG 197 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC--HH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH--HH------HHHHHHHHH
Confidence 67778888899999999999987654 9999999887666665432221 112223221 22 234455556
Q ss_pred hHhhhccCCCCCh
Q 044462 191 MIVRLEDDLGTSS 203 (299)
Q Consensus 191 ~i~rL~NDi~S~~ 203 (299)
+..-+.||+..+.
T Consensus 198 ~aFQi~DD~lD~~ 210 (299)
T 1v4e_A 198 TIYQMFDDIMDFA 210 (299)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcc
Confidence 6666666665543
No 62
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=26.83 E-value=39 Score=24.27 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=23.3
Q ss_pred CCCCchHHHHhhcCCCCHHHHHHHHHHH
Q 044462 209 GDVPKSIQCYMHETRVSEDEAREHIRDL 236 (299)
Q Consensus 209 g~~~n~V~~ym~e~g~s~eeA~~~i~~~ 236 (299)
|.-.|+|..+|+-.|+|-.||++.+.+.
T Consensus 65 g~gGd~i~fv~~~~~~sf~eA~~~La~~ 92 (103)
T 1d0q_A 65 GAGGNAFTFLMDIEGIPFVEAAKRLAAK 92 (103)
T ss_dssp CCEECHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4445899999998899999999888764
No 63
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=25.43 E-value=3.4e+02 Score=23.77 Aligned_cols=172 Identities=7% Similarity=-0.009 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHhhcccccccCC-CHHH----HHHHHHHHhh--cCccccccCchhHHHHHHHHHhhHHHHHHHHHhcCC
Q 044462 37 CRRMSAMVNCLLTSIDDVYDVYG-TLDE----LELFTDAVER--WDATATEQLPYYMKLCFHALYNSVNEMGFIALRDQE 109 (299)
Q Consensus 37 ~Rl~~ak~~~l~~~~DD~~D~~~-t~ee----~~~~~~ai~r--wd~~~~~~lp~~~~~~~~~l~~~~~ei~~~~~~~~~ 109 (299)
.|-.+.-+-.|.=..||+-|... ..++ ++.|.+.+.. |.... ..|.. +.+...+-.+...+ ....
T Consensus 38 ~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~--~~~~~-~~ll~~~p~v~~~f----~~l~- 109 (343)
T 3vj8_A 38 MRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFME--SKEKD-RQVLEDFPTISLEF----RNLA- 109 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCC--CCSTT-THHHHTHHHHHHHH----HHSC-
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhcC--CChhh-HHHHhcCcHHHHHH----HHhH-
Confidence 35444566777889999999754 4443 4444444432 22111 11111 22221111111111 1101
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHhhcCCCchHHHhhccCchHHHHHH
Q 044462 110 VGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPITKEALEFLQDSPDIIRIS 189 (299)
Q Consensus 110 ~~~~~~~l~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~ 189 (299)
.. ..+.+.+....++.++.. +.. ...+|++|+...-..+.|+--.+.+-.++....-++. .+. ........
T Consensus 110 ~~-~~~~i~~~~~~m~~gm~~---dl~-~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~-~~~---~~~~A~~l 180 (343)
T 3vj8_A 110 EK-YQTVIADICRRMGIGMAE---FLD-KHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPL-VGE---DTERANSM 180 (343)
T ss_dssp HH-HHHHHHHHHHHHHHHHHH---GGG-CCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHH-HHH---CHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHH---hcc-CCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccch-hhh---HHHHHHHH
Confidence 11 122234445556666643 222 4678888887777777764333333333332211111 111 12233344
Q ss_pred hhHhhhccCCCCChhhhhcCCCCchHHH-HhhcCCCCHH
Q 044462 190 SMIVRLEDDLGTSSDELKRGDVPKSIQC-YMHETRVSED 227 (299)
Q Consensus 190 ~~i~rL~NDi~S~~~E~~~g~~~n~V~~-ym~e~g~s~e 227 (299)
+...-+.|=+.....+..+|.+ .+.- .|.++|++.+
T Consensus 181 G~AlQltNilRDv~eD~~~gR~--YlP~e~l~~~g~~~~ 217 (343)
T 3vj8_A 181 GLFLQKTNIIRDYLEDQQGGRE--FWPQEVWSRYVKKLG 217 (343)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCC--CSCHHHHTTTCSSGG
T ss_pred HHHHHHHHHHHHhHHHHhCCCe--eCCHHHHHHcCCCHH
Confidence 4444444444444555566654 1211 3667888765
No 64
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=24.93 E-value=2.6e+02 Score=25.06 Aligned_cols=80 Identities=9% Similarity=-0.099 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhhhhcchhHHHHHHHHh--hcCCCchHHHhhccCchHHHHHHhhHhhhc
Q 044462 119 KAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAF--TANPITKEALEFLQDSPDIIRISSMIVRLE 196 (299)
Q Consensus 119 ~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~ 196 (299)
......+.|...+..|...+ .||.++|++.-..-+|...+......+ ++ ..+++..+. ...+-+..++..-+.
T Consensus 182 ~~~~~~~~GQ~lDl~~~~~~-~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~la-ga~~~~~~~---l~~~G~~lG~AFQI~ 256 (380)
T 3lk5_A 182 GMRTEVIGGQLLDIYLESHA-NESVELADSVNRFKTAAYTIARPLHLGASIA-GGSPQLIDA---LLHYGHDIGIAFQLR 256 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHTHHHHTHHHHHHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhchHHHHHHHHHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHH
Confidence 33346677888888877644 579999998866666654211111111 12 134444443 456777888888888
Q ss_pred cCCCCCh
Q 044462 197 DDLGTSS 203 (299)
Q Consensus 197 NDi~S~~ 203 (299)
||+..+-
T Consensus 257 DDiLd~~ 263 (380)
T 3lk5_A 257 DDLLGVF 263 (380)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 8887663
No 65
>3ic3_A Putative pyruvate dehydrogenase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE BGC; 1.80A {Rhodopseudomonas palustris}
Probab=22.97 E-value=1.1e+02 Score=22.09 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=21.4
Q ss_pred chHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 044462 213 KSIQCYMHETRVSEDEAREHIRDLIAET 240 (299)
Q Consensus 213 n~V~~ym~e~g~s~eeA~~~i~~~i~~~ 240 (299)
.+...|-++.|+|.++|++.|.+..+..
T Consensus 59 HaA~a~a~~~~~s~~eal~rI~egF~~E 86 (101)
T 3ic3_A 59 HAARSYARESEYTEDEALERIVEMFEAE 86 (101)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3455677888999999999888866643
No 66
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=21.64 E-value=78 Score=24.12 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=27.9
Q ss_pred hhcCCCCchHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Q 044462 206 LKRGDVPKSIQCYMHETRVSEDEAREHIRDLIAETWMKMNSARF 249 (299)
Q Consensus 206 ~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~l~~~~l 249 (299)
..+|... +.--+-=||++.+||...+.+.|+++...=.+.++
T Consensus 39 Lr~G~~~--~~~~LDLHG~~~~EA~~~L~~fL~~a~~~g~r~V~ 80 (137)
T 3qd7_X 39 LRSGKYP--QQASLNLLRQPVEECRKMVFSFIQQALADGLRNVL 80 (137)
T ss_dssp HHSCCCC--GGGEEECTTCCHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred HHCCCCC--CCeEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 4566642 22222227999999999999999998865333333
No 67
>4akk_A Nitrate regulatory protein; transcription; 2.14A {Klebsiella oxytoca}
Probab=20.65 E-value=55 Score=29.95 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=31.1
Q ss_pred hHhhhccCCCCChhhhh-cCCCCchHHHHhhcCCCCHHHHHHHHHHHHH
Q 044462 191 MIVRLEDDLGTSSDELK-RGDVPKSIQCYMHETRVSEDEAREHIRDLIA 238 (299)
Q Consensus 191 ~i~rL~NDi~S~~~E~~-~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~ 238 (299)
..-++-+.+...+...+ +.-+.-+..++|..+|+|+++|.+.+++.--
T Consensus 349 ~~~~l~~~~~~l~~~l~~r~~i~~Akg~lm~~~~~~e~~A~~~l~~~sm 397 (423)
T 4akk_A 349 ELQQLSGQLASLKDALEERKLIEKAKSVLMTYQGMQEEQAWQALRKMAM 397 (423)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCcCHHHHHHHHHHHHH
Confidence 33344444444443332 2234567789999999999999998887544
No 68
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=20.07 E-value=69 Score=24.64 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=17.0
Q ss_pred chHHH-HhhcCCCCHHHHHHHHHH
Q 044462 213 KSIQC-YMHETRVSEDEAREHIRD 235 (299)
Q Consensus 213 n~V~~-ym~e~g~s~eeA~~~i~~ 235 (299)
..|.+ +|+.+|+|.++|++.++.
T Consensus 103 ~vv~ayLm~~~~~s~~~A~~~v~~ 126 (161)
T 3emu_A 103 AIVIAFLMYYQRLSFINAFNKVQG 126 (161)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34434 566779999999998776
Done!