BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044464
         (686 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
          Length = 92

 Score = 32.0 bits (71), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 474 PDNREDLSLGIGTAVDAWWS--DGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKND 529
           P N ++L L +G  ++      +GWWEGV+ G       N    LSGES  L +++++
Sbjct: 29  PQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELGISQDE 86


>pdb|1P99|A Chain A, 1.7a Crystal Structure Of Protein Pg110 From
           Staphylococcus Aureus
          Length = 295

 Score = 30.4 bits (67), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 145 IVWSGVAWTCGKQLKHFPAFCRNGTTISIQSFVFVMAKG----ENHYVAYLEDMYEDKRG 200
           ++ +GVA   GK  K+ P F     + +++ ++ ++A      +N   A + ++Y  K  
Sbjct: 205 VINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKIVELYHSKEA 264

Query: 201 QKKVK 205
           QK ++
Sbjct: 265 QKALQ 269


>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
           Pneumococcal Virulence Factor Spua
          Length = 714

 Score = 30.4 bits (67), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 555 SDTISPENKISLSSTIANDVKSDGLDSCIEVPI--TTKLDTVEEGKPNLASLTCSDTLP 611
           SD  +PE +I+    + N++   G+ + ++V    T K+D  E+ +PN      +D  P
Sbjct: 245 SDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDADGTP 303


>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
           Pneumococcal Virulence Factor Spua In Complex With An
           Inhibitor
          Length = 708

 Score = 30.4 bits (67), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 555 SDTISPENKISLSSTIANDVKSDGLDSCIEVPI--TTKLDTVEEGKPNLASLTCSDTLP 611
           SD  +PE +I+    + N++   G+ + ++V    T K+D  E+ +PN      +D  P
Sbjct: 246 SDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDADGTP 304


>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
           Pneumococcal Virulence Factor Spua
          Length = 1014

 Score = 30.0 bits (66), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 555 SDTISPENKISLSSTIANDVKSDGLDSCIEVPI--TTKLDTVEEGKPNLASLTCSDTLP 611
           SD  +PE +I+    + N++   G+ + ++V    T K+D  E+ +PN      +D  P
Sbjct: 552 SDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDADGTP 610


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,857,423
Number of Sequences: 62578
Number of extensions: 872033
Number of successful extensions: 1993
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1989
Number of HSP's gapped (non-prelim): 17
length of query: 686
length of database: 14,973,337
effective HSP length: 105
effective length of query: 581
effective length of database: 8,402,647
effective search space: 4881937907
effective search space used: 4881937907
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)