BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044464
(686 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3LHL9|WGE_DROME Protein winged eye OS=Drosophila melanogaster GN=wge PE=1 SV=1
Length = 1658
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 147 WSGVAW----TCGKQLKHFPAFCRNGT-TISI-QSFVFV-MAKGENHYVAYLEDMYEDKR 199
W G A+ G+ K F + G TI++ S VF+ + + Y+ +E M+E
Sbjct: 1483 WYGTAYRKAGVKGRARKQFYKTIKRGKETITVGDSAVFLSTGRPDRPYIGRIESMWETTT 1542
Query: 200 GQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHS-----QVISAEC 242
G K V+V WF+H +E G L+ P +F +PH Q IS C
Sbjct: 1543 GNKVVRVAWFYHPEETTGCPKLK--FPGALFESPHEDENDVQTISHRC 1588
>sp|Q8TBE0|BAHD1_HUMAN Bromo adjacent homology domain-containing 1 protein OS=Homo sapiens
GN=BAHD1 PE=1 SV=2
Length = 780
Score = 37.7 bits (86), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 159 KHFPAFCRNGTTISIQSFVFVMA---KGENHYVAYLEDMYEDKR-GQKKVKVRWFHHNQE 214
K + A R+G TI ++ V + + K YVA + ++E+ G+ + + W++ +
Sbjct: 614 KSYQAVERHGETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMMSLLWYYRPEH 673
Query: 215 VKG--VVSLRNPHPKEVFITPHSQVISAECVDGSASVLTREHFSKCLA 260
++G S+ P EVF + H S C++ VLT + + A
Sbjct: 674 LQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCA 721
>sp|Q497V6|BAHD1_MOUSE Bromo adjacent homology domain-containing 1 protein OS=Mus musculus
GN=Bahd1 PE=2 SV=1
Length = 772
Score = 37.0 bits (84), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 159 KHFPAFCRNGTTISIQSFVFVMA---KGENHYVAYLEDMYEDKR-GQKKVKVRWFHHNQE 214
K + A R+G TI ++ V + + K YVA + ++E+ G+ + + W++ +
Sbjct: 606 KSYQAVERHGETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMMSLLWYYRPEH 665
Query: 215 VKG--VVSLRNPHPKEVFITPHSQVISAECVDGSASVLTREHFSKCLA 260
++G S+ P EVF + H S C++ VLT + + A
Sbjct: 666 LQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCA 713
>sp|Q58DC8|ORC1_BOVIN Origin recognition complex subunit 1 OS=Bos taurus GN=ORC1 PE=2
SV=2
Length = 863
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 14/96 (14%)
Query: 168 GTTISIQSFVFVMAKG---ENHYVAYLEDMYEDKR---GQKKVKVRWFHHNQEV---KGV 218
T I IQ FV+ +G EN YVA L +++ED +K+ +V+WF EV K
Sbjct: 42 STEIHIQVGQFVLIEGDDDENPYVAKLVELFEDDSELYSKKRARVQWFIRFCEVPVCKQH 101
Query: 219 VSLRNPHPKEVF----ITPHSQVISAECVDGSASVL 250
+ R P +E+F T +S IS E + GS V+
Sbjct: 102 LLGRKPGTQEIFWYDNPTCNSN-ISVETIIGSVRVV 136
>sp|Q13415|ORC1_HUMAN Origin recognition complex subunit 1 OS=Homo sapiens GN=ORC1 PE=1
SV=2
Length = 861
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 168 GTTISIQSFVFVMAKG---ENHYVAYLEDMYE---DKRGQKKVKVRWFHHNQEVKGV--- 218
T I IQ FV+ +G EN YVA L +++E D +K+ +V+WF EV
Sbjct: 42 STEIHIQIGQFVLIEGDDDENPYVAKLLELFEDDSDPPPKKRARVQWFVRFCEVPACKRH 101
Query: 219 VSLRNPHPKEVF 230
+ R P +E+F
Sbjct: 102 LLGRKPGAQEIF 113
>sp|Q8R550|SH3K1_MOUSE SH3 domain-containing kinase-binding protein 1 OS=Mus musculus
GN=Sh3kbp1 PE=1 SV=1
Length = 709
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 474 PDNREDLSLGIGTAVDAWWS--DGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKND 529
P N ++L L +G ++ +GWWEGV+ G N LSGES L +++++
Sbjct: 111 PQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELGISQDE 168
>sp|Q96B97|SH3K1_HUMAN SH3 domain-containing kinase-binding protein 1 OS=Homo sapiens
GN=SH3KBP1 PE=1 SV=2
Length = 665
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 474 PDNREDLSLGIGTAVD--AWWSDGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKND 529
P N ++L L +G ++ +GWWEGV+ G N LSGES L +++++
Sbjct: 111 PQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELGISQDE 168
>sp|Q925Q9|SH3K1_RAT SH3 domain-containing kinase-binding protein 1 OS=Rattus norvegicus
GN=Sh3kbp1 PE=1 SV=2
Length = 709
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 474 PDNREDLSLGIGTAVDAWWS--DGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKND 529
P N ++L L +G ++ +GWWEGV+ G N LSGES L +++++
Sbjct: 111 PQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELGISQDE 168
>sp|P42415|IOLD_BACSU 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase OS=Bacillus
subtilis (strain 168) GN=iolD PE=1 SV=2
Length = 637
Score = 33.5 bits (75), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 539 DQWVDIEDKPDILSVISDTISPENKISLSSTIANDVKSDGLDSCIEVPITTKLDTVEEGK 598
D+W+ ++ ++ + PE K S + N+ +D L++ E+P TT L T+ E
Sbjct: 374 DEWLAERERLSKVTFKREAFDPEIKNHFSQEVLNEY-ADALNT--ELPQTTALLTINETI 430
Query: 599 PNLASLTCS-DTLPEDL 614
P + + CS +LP DL
Sbjct: 431 PEDSVIICSAGSLPGDL 447
>sp|Q6N8V0|DNAE2_RHOPA Error-prone DNA polymerase OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=dnaE2 PE=3 SV=1
Length = 1195
Score = 33.5 bits (75), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 381 LSLK--HIEFLPWYSAMYKVNAKIELLCQDSGIRGCWFRC----IVLQVSQKQMKVRYDD 434
LSLK +EFL A +V E+ + GCW RC +V Q V +
Sbjct: 1015 LSLKGHPMEFLRALFAAERVVTCREVSRSEQRASGCWLRCAGVVLVRQRPGSANGVIFMT 1074
Query: 435 VQDEDGSGNLEEWIPVYKVAKPDKLGMR 462
++DE G N+ W V + + + +G R
Sbjct: 1075 IEDETGIANIVVWPAVMEKYRKEVMGAR 1102
>sp|Q9P281|BAHC1_HUMAN BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens
GN=BAHCC1 PE=1 SV=3
Length = 2608
Score = 32.7 bits (73), Expect = 8.9, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 155 GKQLKHF-PAFCRNGTTISIQSFVFVMAKGENH--YVAYLEDMYEDKRGQKKVKVRWFHH 211
GK K F A R T+ + ++ G + Y+ +E M+E VKV+WF+H
Sbjct: 2467 GKARKLFYKAIVRGEETLRVGDCAVFLSAGRPNLPYIGRIESMWESWGSNMVVKVKWFYH 2526
Query: 212 NQEVK 216
+E K
Sbjct: 2527 PEETK 2531
>sp|Q3UHR0|BAHC1_MOUSE BAH and coiled-coil domain-containing protein 1 OS=Mus musculus
GN=Bahcc1 PE=2 SV=2
Length = 2643
Score = 32.7 bits (73), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 155 GKQLKHF-PAFCRNGTTISIQSFVFVMAKGENH--YVAYLEDMYEDKRGQKKVKVRWFHH 211
GK K F A R T+ I ++ G + Y+ +E ++E VKV+WF+H
Sbjct: 2502 GKARKLFYKAIVRGKETLRIGDCAVFLSAGRPNLPYIGRIESLWESWGSNMVVKVKWFYH 2561
Query: 212 NQEVK 216
+E K
Sbjct: 2562 PEETK 2566
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264,769,556
Number of Sequences: 539616
Number of extensions: 11552170
Number of successful extensions: 31542
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 31443
Number of HSP's gapped (non-prelim): 133
length of query: 686
length of database: 191,569,459
effective HSP length: 124
effective length of query: 562
effective length of database: 124,657,075
effective search space: 70057276150
effective search space used: 70057276150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)