Query 044464
Match_columns 686
No_of_seqs 159 out of 257
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:30:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04721 BAH_plant_1 BAH, or Br 100.0 1.4E-39 3E-44 303.7 9.5 130 164-293 1-130 (130)
2 cd04719 BAH_Orc1p_animal BAH, 99.9 1.8E-23 3.9E-28 195.5 5.8 112 169-283 2-123 (128)
3 cd04713 BAH_plant_3 BAH, or Br 99.9 2.2E-22 4.7E-27 191.4 6.1 134 155-293 5-141 (146)
4 PF05641 Agenet: Agenet domain 99.8 1.4E-18 3.1E-23 145.5 6.7 64 396-475 1-66 (68)
5 cd04370 BAH BAH, or Bromo Adja 99.7 7.6E-18 1.6E-22 149.9 6.5 116 168-285 1-122 (123)
6 PF01426 BAH: BAH domain; Int 99.7 8.3E-17 1.8E-21 143.9 4.8 108 169-281 1-112 (119)
7 cd04714 BAH_BAHCC1 BAH, or Bro 99.6 9.1E-16 2E-20 141.8 5.6 112 168-280 1-115 (121)
8 smart00439 BAH Bromo adjacent 99.6 3.7E-15 8.1E-20 133.2 5.7 107 170-280 1-112 (120)
9 cd04717 BAH_polybromo BAH, or 99.4 2E-13 4.4E-18 125.3 6.6 109 168-280 1-112 (121)
10 cd04715 BAH_Orc1p_like BAH, or 99.3 1.3E-12 2.8E-17 126.8 6.1 110 147-257 7-124 (159)
11 smart00743 Agenet Tudor-like d 99.2 3.7E-11 8.1E-16 97.8 6.2 56 481-538 2-61 (61)
12 cd04716 BAH_plantDCM_I BAH, or 99.1 4.3E-11 9.2E-16 111.7 4.9 111 168-279 1-112 (122)
13 cd04708 BAH_plantDCM_II BAH, o 98.9 3E-09 6.4E-14 107.0 6.3 114 164-281 1-139 (202)
14 cd04710 BAH_fungalPHD BAH, or 98.9 3E-09 6.5E-14 100.9 5.9 116 165-286 6-135 (135)
15 smart00743 Agenet Tudor-like d 98.8 2E-08 4.3E-13 81.8 7.4 58 394-475 1-59 (61)
16 cd04709 BAH_MTA BAH, or Bromo 98.8 1E-08 2.3E-13 100.2 6.5 110 168-280 1-132 (164)
17 cd04760 BAH_Dnmt1_I BAH, or Br 98.7 1.3E-08 2.9E-13 95.5 6.2 81 168-251 1-83 (124)
18 cd04718 BAH_plant_2 BAH, or Br 98.7 4.8E-09 1E-13 101.0 2.8 90 184-280 51-140 (148)
19 cd04712 BAH_DCM_I BAH, or Brom 98.6 4.6E-08 9.9E-13 92.3 6.1 101 168-278 3-119 (130)
20 cd04720 BAH_Orc1p_Yeast BAH, o 98.6 1.1E-07 2.3E-12 94.2 7.9 112 167-280 49-170 (179)
21 KOG1886 BAH domain proteins [T 98.3 2.3E-07 5E-12 102.7 2.6 139 156-298 36-181 (464)
22 smart00333 TUDOR Tudor domain. 97.4 0.00035 7.7E-09 55.7 6.3 54 395-475 2-56 (57)
23 cd04711 BAH_Dnmt1_II BAH, or B 96.0 0.0069 1.5E-07 58.3 4.2 67 185-251 26-100 (137)
24 smart00333 TUDOR Tudor domain. 96.0 0.019 4.1E-07 45.7 5.9 51 481-533 2-53 (57)
25 PF05641 Agenet: Agenet domain 95.6 0.027 5.9E-07 47.5 5.7 53 482-536 1-66 (68)
26 PF15057 DUF4537: Domain of un 95.4 0.17 3.6E-06 47.9 10.7 93 399-520 1-100 (124)
27 PF11717 Tudor-knot: RNA bindi 95.3 0.045 9.7E-07 44.6 5.7 48 396-452 1-52 (55)
28 cd04508 TUDOR Tudor domains ar 95.2 0.057 1.2E-06 41.6 5.9 43 399-451 1-44 (48)
29 PF12148 DUF3590: Protein of u 94.5 0.074 1.6E-06 47.7 5.3 61 412-493 9-77 (85)
30 cd04508 TUDOR Tudor domains ar 93.1 0.21 4.5E-06 38.5 5.0 46 485-532 1-48 (48)
31 PF09465 LBR_tudor: Lamin-B re 92.5 0.65 1.4E-05 38.7 7.2 49 480-530 4-54 (55)
32 PF07039 DUF1325: SGF29 tudor- 91.4 2.4 5.1E-05 40.6 10.9 106 397-522 1-114 (130)
33 PF00855 PWWP: PWWP domain; I 91.1 0.53 1.1E-05 40.4 5.7 53 482-534 1-59 (86)
34 smart00561 MBT Present in Dros 90.0 2 4.3E-05 39.1 8.5 52 393-451 25-76 (96)
35 PF09465 LBR_tudor: Lamin-B re 89.3 1.3 2.7E-05 37.1 6.1 39 393-434 3-43 (55)
36 cd05162 PWWP The PWWP domain, 88.1 0.94 2E-05 39.5 5.0 56 482-537 1-65 (87)
37 cd05835 Dnmt3b_related The PWW 88.0 0.61 1.3E-05 41.4 3.8 56 482-537 1-62 (87)
38 smart00293 PWWP domain with co 87.1 1.4 2.9E-05 36.8 5.1 51 482-532 1-61 (63)
39 PF06003 SMN: Survival motor n 86.8 1.7 3.7E-05 46.1 6.9 58 479-537 66-125 (264)
40 PF00567 TUDOR: Tudor domain; 86.4 2 4.4E-05 37.5 6.2 48 394-451 50-98 (121)
41 KOG1827 Chromatin remodeling c 85.3 0.89 1.9E-05 53.4 4.2 117 159-279 178-298 (629)
42 cd05834 HDGF_related The PWWP 84.6 1.8 3.8E-05 38.4 4.8 57 481-537 2-61 (83)
43 cd06080 MUM1_like Mutated mela 82.9 2.5 5.4E-05 37.6 5.1 50 482-532 1-52 (80)
44 cd05836 N_Pac_NP60 The PWWP do 80.3 3.5 7.5E-05 36.7 5.1 56 482-537 1-63 (86)
45 cd05840 SPBC215_ISWI_like The 77.8 4.2 9.1E-05 36.8 4.9 53 482-534 1-65 (93)
46 KOG3038 Histone acetyltransfer 71.4 45 0.00098 35.8 11.2 110 394-519 126-239 (264)
47 cd05841 BS69_related The PWWP 71.0 8 0.00017 34.7 4.8 52 482-536 7-60 (83)
48 PLN00104 MYST -like histone ac 69.9 6.7 0.00014 44.8 5.1 53 393-453 51-111 (450)
49 PF06003 SMN: Survival motor n 69.4 12 0.00026 39.8 6.6 48 394-451 67-116 (264)
50 PF02820 MBT: mbt repeat; Int 64.7 24 0.00052 30.1 6.4 44 401-451 2-45 (73)
51 PF11717 Tudor-knot: RNA bindi 63.5 20 0.00043 29.2 5.4 40 482-521 1-42 (55)
52 PF00567 TUDOR: Tudor domain; 60.3 16 0.00036 31.7 4.8 50 482-533 54-103 (121)
53 smart00561 MBT Present in Dros 56.0 51 0.0011 30.1 7.2 39 479-520 25-66 (96)
54 cd05837 MSH6_like The PWWP dom 53.3 21 0.00046 33.1 4.4 51 481-531 2-65 (110)
55 KOG2039 Transcriptional coacti 50.3 13 0.00028 45.8 3.2 47 395-451 695-742 (875)
56 PF07039 DUF1325: SGF29 tudor- 47.2 58 0.0013 31.3 6.5 45 392-439 68-115 (130)
57 PF15057 DUF4537: Domain of un 46.8 34 0.00073 32.5 4.8 40 393-434 53-98 (124)
58 PF07653 SH3_2: Variant SH3 do 44.9 24 0.00052 28.2 3.0 23 479-501 15-40 (55)
59 cd05838 WHSC1_related The PWWP 42.9 41 0.00089 30.5 4.5 55 483-537 2-66 (95)
60 COG2139 RPL21A Ribosomal prote 42.3 42 0.00091 31.3 4.4 52 480-534 31-95 (98)
61 PF14604 SH3_9: Variant SH3 do 39.9 33 0.00071 27.2 3.0 24 478-501 11-36 (49)
62 smart00326 SH3 Src homology 3 35.6 69 0.0015 24.1 4.2 25 479-503 18-44 (58)
63 KOG0644 Uncharacterized conser 35.5 46 0.001 41.0 4.6 40 480-519 977-1029(1113)
64 cd00174 SH3 Src homology 3 dom 33.8 74 0.0016 23.7 4.1 26 478-503 14-41 (54)
65 PF12148 DUF3590: Protein of u 33.8 88 0.0019 28.5 5.0 46 488-533 2-56 (85)
66 PRK04306 50S ribosomal protein 32.5 80 0.0017 29.4 4.7 54 480-534 33-97 (98)
67 KOG1999 RNA polymerase II tran 31.7 2.8E+02 0.006 35.1 10.2 104 393-535 405-511 (1024)
68 PF08169 RBB1NT: RBB1NT (NUC16 31.1 80 0.0017 29.4 4.4 32 398-431 8-47 (96)
69 KOG4348 Adaptor protein CMS/SE 28.6 15 0.00032 42.0 -0.8 44 480-523 117-162 (627)
70 KOG0162 Myosin class I heavy c 27.9 43 0.00092 40.8 2.6 24 480-503 1068-1093(1106)
71 PF09038 53-BP1_Tudor: Tumour 26.8 1.9E+02 0.004 28.1 6.2 89 415-535 19-109 (122)
72 TIGR00008 infA translation ini 25.6 1.8E+02 0.0038 25.5 5.3 38 498-537 8-45 (68)
73 PF00855 PWWP: PWWP domain; I 25.0 1.6E+02 0.0035 25.0 5.1 45 396-451 1-53 (86)
74 PF02736 Myosin_N: Myosin N-te 24.4 2.4E+02 0.0053 21.9 5.5 32 493-528 10-41 (42)
75 PF11160 DUF2945: Protein of u 24.1 2.6E+02 0.0056 24.0 6.0 21 485-505 1-21 (62)
76 PF12945 YcgR_2: Flagellar pro 22.9 2.5E+02 0.0054 23.7 5.8 38 396-433 1-39 (87)
77 PF09953 DUF2187: Uncharacteri 22.8 2.2E+02 0.0049 24.3 5.2 30 482-517 4-33 (57)
78 smart00326 SH3 Src homology 3 22.6 1.3E+02 0.0029 22.5 3.8 26 393-421 18-43 (58)
79 PHA02769 hypothetical protein; 22.6 43 0.00094 32.3 1.2 66 183-263 39-105 (154)
80 PF02410 Oligomerisation: Olig 20.9 63 0.0014 29.3 1.9 34 17-50 10-43 (100)
No 1
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=100.00 E-value=1.4e-39 Score=303.66 Aligned_cols=130 Identities=51% Similarity=0.958 Sum_probs=125.1
Q ss_pred cccCCeEEEEeeEEEEEecCCceeEeeehhhhcccCCCeeEEEEeeeccceeeeeecCCCCCCceEEEcCCceeeeeeee
Q 044464 164 FCRNGTTISIQSFVFVMAKGENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISAECV 243 (686)
Q Consensus 164 F~RnG~tIsVh~FVyv~aee~~~~vAYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~~~~~~rEvf~s~~~Q~isvECi 243 (686)
|||||++|+|+|||||++++++.||||||+||||.+|.|||+||||++++|+.+.+|+..++++|||+|++.|+|++|||
T Consensus 1 ~~r~~~~i~vGD~V~v~~~~~~~~va~Ie~i~ed~~g~~~v~v~WF~~p~E~~~~~~~~~~~~~EvFlS~~~d~i~~~~I 80 (130)
T cd04721 1 FCRNGVTISVHDFVYVLSEEEDRYVAYIEDLYEDKKGSKMVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISVECI 80 (130)
T ss_pred CccCCEEEECCCEEEEeCCCCCcEEEEEEEEEEcCCCCEEEEEEEecCHHHhccccCCCCCCCCeEEEcCCccccchHHe
Confidence 89999999999999999999999999999999999999999999999999999999965599999999999999999999
Q ss_pred eccccccChHHHHHHHhhccccceeeEEEEEeeccCCCccceeecccccc
Q 044464 244 DGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSNRLKPFDLSKLHGY 293 (686)
Q Consensus 244 DG~AtVLtp~H~ek~~~~~~~~~~~~~~~C~rq~~n~~vKpFditql~GY 293 (686)
+|.|+|||++||+|+....++.+...+|+|+||++++++||||++|||||
T Consensus 81 ~gk~~Vls~~~y~k~~~~~~~~~~~~~f~C~~~~d~~~~~~fd~~~~~g~ 130 (130)
T cd04721 81 DGLATVLTREHYEKFQSVPKNSSELQAYFCYRQIDNNKVKPFDITQLRGY 130 (130)
T ss_pred eeeeEECCHHHHhhhhccccCccccccEEEEEEecCCCCceeeeeccccC
Confidence 99999999999999988766667899999999999999999999999999
No 2
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.88 E-value=1.8e-23 Score=195.47 Aligned_cols=112 Identities=26% Similarity=0.360 Sum_probs=98.7
Q ss_pred eEEEEeeEEEEEecC-CceeEeeehhhhcccCC---CeeEEEEeeeccceeeee---ecCCCCCCceEEEcCCc---eee
Q 044464 169 TTISIQSFVFVMAKG-ENHYVAYLEDMYEDKRG---QKKVKVRWFHHNQEVKGV---VSLRNPHPKEVFITPHS---QVI 238 (686)
Q Consensus 169 ~tIsVh~FVyv~aee-~~~~vAYlEDmYED~kg---~k~V~VRWFh~~~Ev~~~---lp~~~~~~rEvf~s~~~---Q~i 238 (686)
+||+|+|||+|++++ +++|||+||+||||++| .++++||||++.+|+... +....++++|||+|.+. |+|
T Consensus 2 ~~i~vGd~VlI~~~d~~~~yVAkI~~i~e~~~~~~~~~~~~VqWy~R~~Ev~~~~~~~~~~~~~~~EvF~~~~~~~~~~i 81 (128)
T cd04719 2 LTIEVGDFVLIEGEDADGPDVARILHLYEDGNEDDDPKRAIVQWFSRPSEVPKNKRKLLGREPHSQEVFFYSRSSCDNDI 81 (128)
T ss_pred eEEecCCEEEEECCCCCCCcEeeehhhhccccCCcccceEEEEcccChHHccccchhhccCCCCCcEEEEecCccccCcE
Confidence 799999999999999 99999999999999988 789999999999999643 23367899999999987 599
Q ss_pred eeeeeeccccccChHHHHHHHhhccccceeeEEEEEeeccCCCcc
Q 044464 239 SAECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSNRLK 283 (686)
Q Consensus 239 svECiDG~AtVLtp~H~ek~~~~~~~~~~~~~~~C~rq~~n~~vK 283 (686)
+||||.|+++|||-++|+++.. ....+...+|.|++.+++++
T Consensus 82 ~~etI~gkc~V~~~~~y~~l~~---~~~~~~~~~F~r~~~~~k~~ 123 (128)
T cd04719 82 DAETIIGKVRVEPVEPKTDLPE---TKKKTGGPLFVKRYWDTKTF 123 (128)
T ss_pred eHHHcccEEEEEEcCCccchhh---hccccCceEEEEEEeccccc
Confidence 9999999999999999999543 23356789999999999765
No 3
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.86 E-value=2.2e-22 Score=191.36 Aligned_cols=134 Identities=20% Similarity=0.398 Sum_probs=114.1
Q ss_pred ccccccccccccCCeEEEEeeEEEEEecC-CceeEeeehhhhcccCCCeeEEEEeeeccceeeeeecC--CCCCCceEEE
Q 044464 155 GKQLKHFPAFCRNGTTISIQSFVFVMAKG-ENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSL--RNPHPKEVFI 231 (686)
Q Consensus 155 ~Kr~kHY~sF~RnG~tIsVh~FVyv~aee-~~~~vAYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~--~~~~~rEvf~ 231 (686)
.++++||++|..+|++|+|+|||||.+++ .+-|||.|++|||+..|.+||+|+||.+..|+....+. ....++|||+
T Consensus 5 ~~~~~~y~s~~~dg~~y~vgD~Vlv~~~~~~~pyI~~I~~i~~~~~~~~~v~V~WFyRpeEi~~~~~~~~~~~~~~ElF~ 84 (146)
T cd04713 5 KKKKCHYTSFEKDGNKYRLEDCVLLVPEDDQKPYIAIIKDIYKQEEGSLKLEVQWLYRPEEIEKKKGGNWKAEDPRELFY 84 (146)
T ss_pred ccceeeeeeEEECCEEEECCCEEEEeCCCCCCCEEEEEEEEEEcCCCCEEEEEEeeECHHHhccccccccccCCCCeEEE
Confidence 37899999999999999999999999977 67899999999999999999999999999998653221 1235899999
Q ss_pred cCCceeeeeeeeeccccccChHHHHHHHhhccccceeeEEEEEeeccCCCccceeecccccc
Q 044464 232 TPHSQVISAECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSNRLKPFDLSKLHGY 293 (686)
Q Consensus 232 s~~~Q~isvECiDG~AtVLtp~H~ek~~~~~~~~~~~~~~~C~rq~~n~~vKpFditql~GY 293 (686)
|.+...+++|||.|.++||+-.-+.+ +|.......|+|.+.||+.+-|+|+||- ++|
T Consensus 85 S~~~d~~~~~~I~gkc~V~~~~~~~~----~~~~~~~~~F~cr~~yD~~~~~~~~~~~-~~~ 141 (146)
T cd04713 85 SFHRDEVPAESVLHPCKVAFVPKGKQ----IPLRKGHSGFIVRRVYDNVNKKLWKLTD-QDY 141 (146)
T ss_pred eCCCCcCCHHHCcceeEEEECCcccc----CCccCCCCeEEEEEEEcCCCCcEeeccc-ccc
Confidence 99999999999999999975443333 4554456689999999999999999985 455
No 4
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=99.75 E-value=1.4e-18 Score=145.53 Aligned_cols=64 Identities=39% Similarity=0.835 Sum_probs=43.7
Q ss_pred CCCCCEEEEEecCCcceeeEEEEEEEEeeCC-eEEEEeCcccCCCCCCc-ceEEEecccccCCCccCCCCCCCCCcCCCC
Q 044464 396 YKVNAKIELLCQDSGIRGCWFRCIVLQVSQK-QMKVRYDDVQDEDGSGN-LEEWIPVYKVAKPDKLGMRCSDRPTIRPTP 473 (686)
Q Consensus 396 FkvG~~VEV~S~EeGfrGsWF~AtVIk~~~~-ky~VeY~dL~deDgs~~-L~EwV~~sr~a~pd~~g~R~~~R~~IRP~P 473 (686)
|++|++|||+++++||+||||+|+|++..++ +|+|+|++|.++++.++ |+|||+.. .|||+|
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~~~~V~Y~~~~~~~~~~~~l~e~V~~~----------------~iRP~p 64 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDDKYLVEYDDLPDEDGESPPLKEWVDAR----------------RIRPCP 64 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT-EEEEEETT-SS--------EEEEEGG----------------GEEE--
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCcEEEEEECCcccccccccccEEEechh----------------eEECcC
Confidence 7999999999999999999999999999877 99999999999876665 99999975 699999
Q ss_pred CC
Q 044464 474 PD 475 (686)
Q Consensus 474 P~ 475 (686)
|.
T Consensus 65 P~ 66 (68)
T PF05641_consen 65 PP 66 (68)
T ss_dssp --
T ss_pred cC
Confidence 96
No 5
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=99.72 E-value=7.6e-18 Score=149.92 Aligned_cols=116 Identities=28% Similarity=0.488 Sum_probs=102.5
Q ss_pred CeEEEEeeEEEEEecC----CceeEeeehhhhcccCCCeeEEEEeeeccceeeeeecCCCCCCceEEEcCCceeeeeeee
Q 044464 168 GTTISIQSFVFVMAKG----ENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISAECV 243 (686)
Q Consensus 168 G~tIsVh~FVyv~aee----~~~~vAYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~~~~~~rEvf~s~~~Q~isvECi 243 (686)
|+++.|.|||||.+++ ++.+||+|+.|+++++|.+||+||||.+..|+..... +.+++||||+|.+..+|.+|||
T Consensus 1 g~~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~~~~~~~~v~wf~rp~e~~~~~~-~~~~~~Elf~s~~~~~i~v~~I 79 (123)
T cd04370 1 GITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTNGSKQVKVRWFYRPEETPKGLS-PFALRRELFLSDHLDEIPVESI 79 (123)
T ss_pred CCEEecCCEEEEecCCcCCCCCCEEEEEeeeeECCCCCEEEEEEEEEchhHhccccc-cccccceeEEecCccccCHHHh
Confidence 7899999999999988 6799999999999999999999999999999987666 5889999999999999999999
Q ss_pred eccccccChHHHHHHHhhccccceeeEEEEEeeccC--CCccce
Q 044464 244 DGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRS--NRLKPF 285 (686)
Q Consensus 244 DG~AtVLtp~H~ek~~~~~~~~~~~~~~~C~rq~~n--~~vKpF 285 (686)
.|.|.||+.+.|++... .+.......|+|.+.|+. ..+|++
T Consensus 80 ~gkc~V~~~~~~~~~~~-~~~~~~~~~f~~r~~yd~~~~~fk~~ 122 (123)
T cd04370 80 IGKCKVLFVSEFEGLKQ-RPNKIDTDDFFCRLAYDPTTKEFKAL 122 (123)
T ss_pred ccccEEEechHhhcccc-ccccCCCCeEEEEEEECcCcceEEeC
Confidence 99999999999998642 123345677999999997 466654
No 6
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=99.65 E-value=8.3e-17 Score=143.93 Aligned_cols=108 Identities=29% Similarity=0.540 Sum_probs=95.5
Q ss_pred eEEEEeeEEEEEecC--CceeEeeehhhhcccCCC--eeEEEEeeeccceeeeeecCCCCCCceEEEcCCceeeeeeeee
Q 044464 169 TTISIQSFVFVMAKG--ENHYVAYLEDMYEDKRGQ--KKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISAECVD 244 (686)
Q Consensus 169 ~tIsVh~FVyv~aee--~~~~vAYlEDmYED~kg~--k~V~VRWFh~~~Ev~~~lp~~~~~~rEvf~s~~~Q~isvECiD 244 (686)
.||.|+|||||..+. +..+||+|++||++.+++ +||+||||.+.+|+ .+.+..++||||+|.+.+.++++||.
T Consensus 1 ~~~~vGD~V~v~~~~~~~~~~v~~I~~i~~~~~~~~~~~~~v~Wf~rp~d~---~~~~~~~~~Elf~s~~~~~~~~~~I~ 77 (119)
T PF01426_consen 1 VTYKVGDFVYVKPDDPPEPPYVARIEEIWEDKDGNKEKMVKVRWFYRPEDT---SLGKTFSPRELFLSDHCDDIPVESIR 77 (119)
T ss_dssp EEEETTSEEEEECTSTTSEEEEEEEEEEEEETTTSEEEEEEEEEEEEGGGS---TTGGHSCTTEEEEEEEEEEEEGGGEE
T ss_pred CEEeCCCEEEEeCCCCCCCCEEEEEEEEEcCCCCCEEEEEEEEEeECcccc---cccccCCCCEEEEECcEeEEehhhEE
Confidence 489999999999999 999999999999999999 99999999999998 33345677999999999999999999
Q ss_pred ccccccChHHHHHHHhhccccceeeEEEEEeeccCCC
Q 044464 245 GSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSNR 281 (686)
Q Consensus 245 G~AtVLtp~H~ek~~~~~~~~~~~~~~~C~rq~~n~~ 281 (686)
|.+.|++.++|++.....+ . ....|+|.+.|+...
T Consensus 78 gkc~V~~~~~~~~~~~~~~-~-~~~~F~cr~~yd~~~ 112 (119)
T PF01426_consen 78 GKCNVLHLEDYEQARPYGK-E-EPDTFFCRYAYDPQK 112 (119)
T ss_dssp EEEEEEEHHHHTTGCCHCH-H-TTTEEEEEEEEETTT
T ss_pred eeeEEEECCcccccccccc-C-CCCEEEEEEEEeCCc
Confidence 9999999999999654422 1 567899999999753
No 7
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.59 E-value=9.1e-16 Score=141.77 Aligned_cols=112 Identities=23% Similarity=0.388 Sum_probs=94.8
Q ss_pred CeEEEEeeEEEEEecCC--ceeEeeehhhhcccCCCeeEEEEeeeccceeeeeecCCCCCCceEEEcCCceeeeeeeeec
Q 044464 168 GTTISIQSFVFVMAKGE--NHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISAECVDG 245 (686)
Q Consensus 168 G~tIsVh~FVyv~aee~--~~~vAYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~~~~~~rEvf~s~~~Q~isvECiDG 245 (686)
|.+|.|+|||||.+++. ..|||.|+.|+||++|+++|+|+||.+..|..+.-. +.+.++|||+|.+.++++++||.|
T Consensus 1 ~~~~~vGD~V~v~~~~~~~~pyIgrI~~i~e~~~g~~~~~v~WfyrPeEt~~~~~-~~~~~~EvF~S~~~d~~~~~~I~g 79 (121)
T cd04714 1 KEIIRVGDCVLFKSPGRPSLPYVARIESLWEDPEGNMVVRVKWYYRPEETKGGRK-PNHGEKELFASDHQDENSVQTIEH 79 (121)
T ss_pred CCEEEcCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEEEcHHHccCccc-ccCCCCceEecCCcccccHHHhCc
Confidence 67899999999999874 689999999999999999999999999999865433 578999999999999999999999
Q ss_pred cccccChHHHHHHHhhcccc-ceeeEEEEEeeccCC
Q 044464 246 SASVLTREHFSKCLAAFPNA-LLARVHLCTRQFRSN 280 (686)
Q Consensus 246 ~AtVLtp~H~ek~~~~~~~~-~~~~~~~C~rq~~n~ 280 (686)
.|+||+...|.++....+.. ...-.|+|---|+-+
T Consensus 80 kc~V~~~~ey~~~~~~~~~~~~~~d~~~Ce~~yn~~ 115 (121)
T cd04714 80 KCYVLTFAEYERLARVKKKPQDGVDFYYCAGTYNPD 115 (121)
T ss_pred ccEEEehhHheecccccCCCCcCCCEEEEeccCCCC
Confidence 99999999999976543211 233458887766654
No 8
>smart00439 BAH Bromo adjacent homology domain.
Probab=99.55 E-value=3.7e-15 Score=133.20 Aligned_cols=107 Identities=23% Similarity=0.433 Sum_probs=94.6
Q ss_pred EEEEeeEEEEEecC--CceeEeeehhhhcccCCC-eeEEEEeeeccceeeeeecCCCCCCceEEEcCCceeeeeeeeecc
Q 044464 170 TISIQSFVFVMAKG--ENHYVAYLEDMYEDKRGQ-KKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISAECVDGS 246 (686)
Q Consensus 170 tIsVh~FVyv~aee--~~~~vAYlEDmYED~kg~-k~V~VRWFh~~~Ev~~~lp~~~~~~rEvf~s~~~Q~isvECiDG~ 246 (686)
+|+|.|||||.++. +..+||.|++||++.+|+ +|++|+||-+..|+..... +.+.++|||+|....+|.+|||-|.
T Consensus 1 ~~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~~~~~~~v~Wf~rp~e~~~~~~-~~~~~~Elf~s~~~~~i~~~~I~~k 79 (120)
T smart00439 1 TIRVGDFVLVEPDDADEPYYIGRIEEIFETKKNSEKMVRVRWFYRPEETVLEKA-ALFDKNEVFLSDEYDTVPLSDIIGK 79 (120)
T ss_pred CcccCCEEEEeCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEChhhcccccc-ccCCCcceEEEccCccCChHHeeeE
Confidence 58899999999997 679999999999999999 9999999999999977655 4678999999999999999999999
Q ss_pred ccccChHHHHHHHhhccccc--eeeEEEEEeeccCC
Q 044464 247 ASVLTREHFSKCLAAFPNAL--LARVHLCTRQFRSN 280 (686)
Q Consensus 247 AtVLtp~H~ek~~~~~~~~~--~~~~~~C~rq~~n~ 280 (686)
+.||+...|.+.... .. ....|+|.+.|+..
T Consensus 80 c~V~~~~~~~~~~~~---~~~~~~~~f~cr~~yd~~ 112 (120)
T smart00439 80 CNVLSKSDYPGLRPE---GKIGEPDVFFCESLYDPE 112 (120)
T ss_pred EEEEEcchhcccccc---cCCCCCCeEEEEEEEccc
Confidence 999999999884332 22 35689999999975
No 9
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.42 E-value=2e-13 Score=125.33 Aligned_cols=109 Identities=20% Similarity=0.365 Sum_probs=96.4
Q ss_pred CeEEEEeeEEEEEecC--CceeEeeehhhhcccCCCeeEEEEeeeccceeeeeecCCCCCCceEEEcCCceeeeeeeeec
Q 044464 168 GTTISIQSFVFVMAKG--ENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISAECVDG 245 (686)
Q Consensus 168 G~tIsVh~FVyv~aee--~~~~vAYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~~~~~~rEvf~s~~~Q~isvECiDG 245 (686)
|+.+.|.|+|||.+.+ ...+||-|+.|+++..|+++|.|+||-+.+|+.. .|...+.++|||+|+..-.+.++||-|
T Consensus 1 g~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~~~~Wf~rP~et~~-~~~~~~~~~Evfls~~~d~~~~~~I~~ 79 (121)
T cd04717 1 GLQYRVGDCVYVANPEDPSKPIIFRIERLWKDEDGEKFFFGCWFYRPEETFH-EPTRKFYKNEVFKSPLYETVPVEEIVG 79 (121)
T ss_pred CCEEECCCEEEEeCCCCCCCCEEEEEeEEEECCCCCEEEEEEEEeChHHccC-CCccccccCceEEcCccccccHHHhcC
Confidence 7789999999999987 7799999999999999999999999999999844 455788999999999999999999999
Q ss_pred cccccChHHHHHHHhhccccc-eeeEEEEEeeccCC
Q 044464 246 SASVLTREHFSKCLAAFPNAL-LARVHLCTRQFRSN 280 (686)
Q Consensus 246 ~AtVLtp~H~ek~~~~~~~~~-~~~~~~C~rq~~n~ 280 (686)
.++||++..|.+.- |... ....|+|.+.++..
T Consensus 80 kc~Vl~~~~y~~~~---p~~~~~~dvy~ce~~y~~~ 112 (121)
T cd04717 80 KCAVMDVKDYIKGR---PTEISEEDVYVCESRYNES 112 (121)
T ss_pred eeEEEehHHHhcCC---CCCCCCCCEEEEeEEECcc
Confidence 99999999999853 2222 34679999999965
No 10
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.33 E-value=1.3e-12 Score=126.78 Aligned_cols=110 Identities=23% Similarity=0.332 Sum_probs=92.6
Q ss_pred EeccccccccccccccccccCCeEEEEeeEEEEEecCCceeEeeehhhhcccC--CCeeEEEEeeeccceeeeeec-CCC
Q 044464 147 WSGVAWTCGKQLKHFPAFCRNGTTISIQSFVFVMAKGENHYVAYLEDMYEDKR--GQKKVKVRWFHHNQEVKGVVS-LRN 223 (686)
Q Consensus 147 W~G~~W~C~Kr~kHY~sF~RnG~tIsVh~FVyv~aee~~~~vAYlEDmYED~k--g~k~V~VRWFh~~~Ev~~~lp-~~~ 223 (686)
|.|-+= =.|-.+||++|..+|.++.|.|.|||-++...-|||-|+.|||+.. |.+|++|+||-+..|+..-.. .+.
T Consensus 7 ~~g~~~-~~~~~~~Y~s~~~~g~~y~lGD~Vlv~s~~~~~yIgkI~~iwe~~~~~g~~~~~v~WfyRp~E~~~~~~~~~~ 85 (159)
T cd04715 7 KRGEGG-KKKDGQFYRSFTYDGVEYRLYDDVYVHNGDSEPYIGKIIKIYETAIDSGKKKVKVIWFFRPSEIRMELKGEPK 85 (159)
T ss_pred eccccc-ccCCceEEEEEEECCEEEeCCCEEEEeCCCCCCEEEEEEEEEEcCCcCCceEEEEEeeeCHHHhccccccCcc
Confidence 455542 1244569999999999999999999999999999999999999875 999999999999999854332 246
Q ss_pred CCCceEEEcCCc-----eeeeeeeeeccccccChHHHHH
Q 044464 224 PHPKEVFITPHS-----QVISAECVDGSASVLTREHFSK 257 (686)
Q Consensus 224 ~~~rEvf~s~~~-----Q~isvECiDG~AtVLtp~H~ek 257 (686)
+.+.|||+|.+- ++.+++||-|.+.||+=..|.+
T Consensus 86 ~~~nEvFlS~~~d~~~~~~n~l~sI~gKC~Vl~~~ey~~ 124 (159)
T cd04715 86 RHINEVFLACGRGEGLANINLLESIIGKCNVVCISEDFR 124 (159)
T ss_pred cCCCcEEEecCcCccccccCcHHHccceeEEEEehHhhh
Confidence 889999999863 6789999999999999877765
No 11
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=99.18 E-value=3.7e-11 Score=97.78 Aligned_cols=56 Identities=30% Similarity=0.483 Sum_probs=52.3
Q ss_pred CcCCCCEEEEee--CCCeeEEEEEEEecCCCCeEEEEECC--cceEEEeecCCCcceeeecC
Q 044464 481 SLGIGTAVDAWW--SDGWWEGVVIGVDSSSTDNLQVYLSG--ESLFLNVNKNDLRISRDWAG 538 (686)
Q Consensus 481 ~~~vGD~VDAw~--~DGWWeGVV~kv~~~g~~ky~VyFpG--e~del~f~~sdLRpsldW~d 538 (686)
.|++|+.|||++ +++||+|+|+++. ++++|.|+|++ ++...+|+.++|||+++|.+
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~--~~~~~~V~~~~~~~~~~e~v~~~~LRp~~~w~~ 61 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVL--GDGKYLVRYLTESEPLKETVDWSDLRPHPPWVD 61 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEEC--CCCEEEEEECCCCcccEEEEeHHHcccCCCCCC
Confidence 489999999999 9999999999996 46899999999 99999999999999999975
No 12
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.13 E-value=4.3e-11 Score=111.69 Aligned_cols=111 Identities=13% Similarity=0.182 Sum_probs=88.9
Q ss_pred CeEEEEeeEEEEEecC-CceeEeeehhhhcccCCCeeEEEEeeeccceeeeeecCCCCCCceEEEcCCceeeeeeeeecc
Q 044464 168 GTTISIQSFVFVMAKG-ENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISAECVDGS 246 (686)
Q Consensus 168 G~tIsVh~FVyv~aee-~~~~vAYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~~~~~~rEvf~s~~~Q~isvECiDG~ 246 (686)
|+.|.+.|+|||.+++ +.-|||-|+.|+|++.|+++++||||-+..|..+--+.....+||||+|...-+++++||-|.
T Consensus 1 g~~~~lgD~V~v~~~~~~~~yi~rI~~i~e~~~g~~~~~v~WyyRpeet~~~r~~~~~~~rEvFlS~~~D~~pl~~I~~K 80 (122)
T cd04716 1 GITYNLGDDAYVQGGEGEEPFICKITEFFEGTDGKTYFTAQWFYRAEDTVIERQATNHDKKRVFYSEIKNDNPLDCLISK 80 (122)
T ss_pred CcEEEcCCEEEEECCCCCCCEEEEEEEEEEcCCCceEEEEEEEEcHHHhccccccccCCCceEEEecccCccchhheeee
Confidence 7899999999999998 678999999999999999999999999999864432224666999999999999999999999
Q ss_pred ccccChHHHHHHHhhccccceeeEEEEEeeccC
Q 044464 247 ASVLTREHFSKCLAAFPNALLARVHLCTRQFRS 279 (686)
Q Consensus 247 AtVLtp~H~ek~~~~~~~~~~~~~~~C~rq~~n 279 (686)
++||+=.-+++ +.+-+.....--|+|..-|+-
T Consensus 81 c~V~~~~~~~~-~~~~~~~~~~~df~c~~~Y~~ 112 (122)
T cd04716 81 VKILQVPPNVG-TKRKKPNSEKCDYYYDMEYCV 112 (122)
T ss_pred eEEEEeCCCCC-cccccccCCCceEEEeeEecc
Confidence 99998444444 211112233456999887753
No 13
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.86 E-value=3e-09 Score=107.03 Aligned_cols=114 Identities=20% Similarity=0.388 Sum_probs=95.3
Q ss_pred cccCCeEEEEeeEEEEEec-------------------CCceeEeeehhhhcccCCC------eeEEEEeeeccceeeee
Q 044464 164 FCRNGTTISIQSFVFVMAK-------------------GENHYVAYLEDMYEDKRGQ------KKVKVRWFHHNQEVKGV 218 (686)
Q Consensus 164 F~RnG~tIsVh~FVyv~ae-------------------e~~~~vAYlEDmYED~kg~------k~V~VRWFh~~~Ev~~~ 218 (686)
|.-+|++..|||||||.++ -+--+|++|=.+++-+.++ -+|+||||-+.++....
T Consensus 1 f~~~Gv~Y~vgD~VYv~p~~f~~~~~~~~~~~~G~N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwFYRPEdt~~~ 80 (202)
T cd04708 1 FVYDGVTYSVGDFLYVSPDAFAEEERERATFKAGRNVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRFYRPEDVSPE 80 (202)
T ss_pred CcCCCEEEecCCeEEECcccccccccccccccccccCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEEechhhcCcc
Confidence 7789999999999999999 2345799999999977774 48999999999997554
Q ss_pred ecCCCCCCceEEEcCCceeeeeeeeeccccccChHHHHHHHhhccccceeeEEEEEeeccCCC
Q 044464 219 VSLRNPHPKEVFITPHSQVISAECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSNR 281 (686)
Q Consensus 219 lp~~~~~~rEvf~s~~~Q~isvECiDG~AtVLtp~H~ek~~~~~~~~~~~~~~~C~rq~~n~~ 281 (686)
.. ---..||||+|...-+++++||-|-.+|...+.+.++.+. ......|+|..-|+..+
T Consensus 81 ~~-y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~~~~~~---~~~~~~Ffc~~~Yd~~t 139 (202)
T cd04708 81 KA-YASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPDSDAP---VIFEHVFFCELLYDPAK 139 (202)
T ss_pred cc-eecCceeEEEeccceeechhHcceEEEEEecCcchhhhcc---ccCCCceEEEEEEcCCC
Confidence 43 2346899999999999999999999999999999987542 24477899999998653
No 14
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.86 E-value=3e-09 Score=100.93 Aligned_cols=116 Identities=14% Similarity=0.308 Sum_probs=94.0
Q ss_pred ccCCeEEEEeeEEEEEecC--CceeEeeehhhhcccCCC------------eeEEEEeeeccceeeeeecCCCCCCceEE
Q 044464 165 CRNGTTISIQSFVFVMAKG--ENHYVAYLEDMYEDKRGQ------------KKVKVRWFHHNQEVKGVVSLRNPHPKEVF 230 (686)
Q Consensus 165 ~RnG~tIsVh~FVyv~aee--~~~~vAYlEDmYED~kg~------------k~V~VRWFh~~~Ev~~~lp~~~~~~rEvf 230 (686)
-.+|+.++|+|||||.++. +--|||-|..++..+.+. -+|+|+||-+..|+..-. .-.+||+|
T Consensus 6 ~~~g~~~~vgD~Vyv~~~~~~ePyyIgrI~e~~~~~~~~~~~~~~~~~~~~~~vrV~wfYRp~Di~~~~---~~d~relf 82 (135)
T cd04710 6 LKNGELLKVNDHIYMSSEPPGEPYYIGRIMEFVPKHEFPSGIHARVFPASYFQVRLNWYYRPRDISRRV---VADSRLLY 82 (135)
T ss_pred ccCCeEEeCCCEEEEecCCCCCCCEEEEEEEEEecCCCCccccccccCCCcEEEEEEEEeCHHHcCCcc---cCCceEEE
Confidence 4689999999999999985 557899999999876444 389999999999974332 34789999
Q ss_pred EcCCceeeeeeeeeccccccChHHHHHHHhhccccceeeEEEEEeeccCCCcccee
Q 044464 231 ITPHSQVISAECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSNRLKPFD 286 (686)
Q Consensus 231 ~s~~~Q~isvECiDG~AtVLtp~H~ek~~~~~~~~~~~~~~~C~rq~~n~~vKpFd 286 (686)
.|.+.-++++++|-|.++|..-+-++-+..- ......++|.+-||-...|=||
T Consensus 83 ~S~h~d~~p~~si~gKC~V~~~~di~~l~~~---~~~~~~Fyf~~lyD~~~~r~~~ 135 (135)
T cd04710 83 ASMHSDICPIGSVRGKCTVRHRDQIPDLEEY---KKRPNHFYFDQLFDRYILRYYD 135 (135)
T ss_pred EEeeEeeechHHEEeEEEEEEecccchhhhh---ccCCCEEEEEeeeCcchhhccC
Confidence 9999999999999999999988877663222 1234569999999988776554
No 15
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=98.78 E-value=2e-08 Score=81.81 Aligned_cols=58 Identities=26% Similarity=0.497 Sum_probs=48.7
Q ss_pred cCCCCCCEEEEEecCCcceeeEEEEEEEEeeC-CeEEEEeCcccCCCCCCcceEEEecccccCCCccCCCCCCCCCcCCC
Q 044464 394 AMYKVNAKIELLCQDSGIRGCWFRCIVLQVSQ-KQMKVRYDDVQDEDGSGNLEEWIPVYKVAKPDKLGMRCSDRPTIRPT 472 (686)
Q Consensus 394 ~~FkvG~~VEV~S~EeGfrGsWF~AtVIk~~~-~ky~VeY~dL~deDgs~~L~EwV~~sr~a~pd~~g~R~~~R~~IRP~ 472 (686)
+.|++|++|||+..+ .|+||+|+|++..+ ++|.|.|.+ +..+++|.++.+ .|||+
T Consensus 1 ~~~~~G~~Ve~~~~~---~~~W~~a~V~~~~~~~~~~V~~~~-----~~~~~~e~v~~~----------------~LRp~ 56 (61)
T smart00743 1 SDFKKGDRVEVFSKE---EDSWWEAVVTKVLGDGKYLVRYLT-----ESEPLKETVDWS----------------DLRPH 56 (61)
T ss_pred CCcCCCCEEEEEECC---CCEEEEEEEEEECCCCEEEEEECC-----CCcccEEEEeHH----------------HcccC
Confidence 368999999999876 79999999999866 889999988 233567888865 79999
Q ss_pred CCC
Q 044464 473 PPD 475 (686)
Q Consensus 473 PP~ 475 (686)
||-
T Consensus 57 ~~w 59 (61)
T smart00743 57 PPW 59 (61)
T ss_pred CCC
Confidence 984
No 16
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.77 E-value=1e-08 Score=100.23 Aligned_cols=110 Identities=12% Similarity=0.260 Sum_probs=90.4
Q ss_pred CeEEEEeeEEEEEecCCce-eEeeehhhhcccCCCeeEEEEeeeccceeeee---e-c-----------------CCCCC
Q 044464 168 GTTISIQSFVFVMAKGENH-YVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGV---V-S-----------------LRNPH 225 (686)
Q Consensus 168 G~tIsVh~FVyv~aee~~~-~vAYlEDmYED~kg~k~V~VRWFh~~~Ev~~~---l-p-----------------~~~~~ 225 (686)
++.|.|.|||||.++..+- +|+.||.|.+++.|+.+|+|+||-+..|+-.. | . -+.+.
T Consensus 1 ~~~yrvGD~Vy~~~~~~~Py~I~rI~e~~~~~~~~~~vkV~wfYRp~DI~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd04709 1 ANMYRVGDYVYFESSPNNPYLIRRIEELNKTARGHVEAKVVCYYRRRDIPDSLYQLADQHRRELEEKSDDLTPKQRHQLR 80 (164)
T ss_pred CcEEecCCEEEEECCCCCCCEEEEEEEEEeCCCCCEEEEEEEEEChhHccchhhhhcccccccccccccccchhhhhccC
Confidence 4678999999999986554 59999999999999999999999998886221 0 0 02357
Q ss_pred CceEEEcCCceeeeeeeeeccccccChHHHHHHHhhccccceeeEEEEEeeccCC
Q 044464 226 PKEVFITPHSQVISAECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSN 280 (686)
Q Consensus 226 ~rEvf~s~~~Q~isvECiDG~AtVLtp~H~ek~~~~~~~~~~~~~~~C~rq~~n~ 280 (686)
.||||+|.+...++|.||-|.++|+.-..|+++..- ......|+|..-||-.
T Consensus 81 ~rELF~S~~~d~~p~~~IrGKC~V~~~~d~~~l~~~---~~~~d~Ff~~~~YDP~ 132 (164)
T cd04709 81 HRELFLSRQVETLPATHIRGKCSVTLLNDTESARSY---LAREDTFFYSLVYDPE 132 (164)
T ss_pred cceeEEecccccccHHHeeeeEEEEEehhhhhhhhc---cCCCCEEEEEEEECCC
Confidence 999999999999999999999999999999996332 2345679999988865
No 17
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.75 E-value=1.3e-08 Score=95.53 Aligned_cols=81 Identities=21% Similarity=0.445 Sum_probs=70.2
Q ss_pred CeEEEEeeEEEEEec--CCceeEeeehhhhcccCCCeeEEEEeeeccceeeeeecCCCCCCceEEEcCCceeeeeeeeec
Q 044464 168 GTTISIQSFVFVMAK--GENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISAECVDG 245 (686)
Q Consensus 168 G~tIsVh~FVyv~ae--e~~~~vAYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~~~~~~rEvf~s~~~Q~isvECiDG 245 (686)
|-.|.|.|+|+|-+. .+--|||+||-|||++.|.||+.||||-+..|- +|= ..-++||||+|..-.++++.||.|
T Consensus 1 g~~i~vGD~V~v~~~~~~~p~~I~rV~~mfe~~~g~k~~h~rWf~Rg~dT--VlG-~~~~~kEvFlsd~c~d~~l~~I~~ 77 (124)
T cd04760 1 GEELEAGDCVSVKPDDPTKPLYIARVTYMWKDSIGGKMFHAHWFCRGSDT--VLG-ETSDPLELFLVDECEDMALSSIHG 77 (124)
T ss_pred CCEEecCCEEEEecCCCCCCcEEEEEhhheecCCCCcEEEEEEEEECCcc--ccc-ccCCCcEEEeecccCCcchHHhee
Confidence 567999999999975 355689999999999999999999999999873 222 246899999999999999999999
Q ss_pred cccccC
Q 044464 246 SASVLT 251 (686)
Q Consensus 246 ~AtVLt 251 (686)
.++|+-
T Consensus 78 Kv~V~~ 83 (124)
T cd04760 78 KVNVIY 83 (124)
T ss_pred eeEEEE
Confidence 999874
No 18
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.73 E-value=4.8e-09 Score=101.00 Aligned_cols=90 Identities=20% Similarity=0.349 Sum_probs=77.0
Q ss_pred CceeEeeehhhhcccCCCeeEEEEeeeccceeeeeecCCCCCCceEEEcCCceeeeeeeeeccccccChHHHHHHHhhcc
Q 044464 184 ENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISAECVDGSASVLTREHFSKCLAAFP 263 (686)
Q Consensus 184 ~~~~vAYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~~~~~~rEvf~s~~~Q~isvECiDG~AtVLtp~H~ek~~~~~~ 263 (686)
.+.|||+||-|.+|. |+.+|++|||-++.|..+-- .+-+..||||.|.+..+++++||-|-+.|++++.|.| +.
T Consensus 51 ~~~~vArIekiW~~~-G~~~~~grWy~rPEET~~gr-~~~~~~kEvFlS~~~d~~~~~~I~gkC~V~~~keY~k-~e--- 124 (148)
T cd04718 51 GDLWLARIEKLWEEN-GTYWYAARWYTLPEETHMGR-QPHNLRRELYLTNDFADIEMECILRHCSVKCPKEFRD-AS--- 124 (148)
T ss_pred CchHHHHHHHHHhcc-CceEEEEEEEeCchhccCcc-ccccccceeeeccccccccHHHHhcccEEcCHHHccc-cc---
Confidence 678899999999998 99999999999999975443 3578899999999999999999999999999999998 22
Q ss_pred ccceeeEEEEEeeccCC
Q 044464 264 NALLARVHLCTRQFRSN 280 (686)
Q Consensus 264 ~~~~~~~~~C~rq~~n~ 280 (686)
....-.|+|---|+..
T Consensus 125 -~~g~Dvy~Ce~~Yd~~ 140 (148)
T cd04718 125 -NDGDDVFLCEYEYDVH 140 (148)
T ss_pred -CCCCceEEEEEEEhhh
Confidence 2345579998777643
No 19
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.63 E-value=4.6e-08 Score=92.26 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=81.4
Q ss_pred CeEEEEeeEEEEEecCCc------------eeEeeehhhhcccCCCeeEEEEeeeccceeeeeecCCCCCCceEEEcCCc
Q 044464 168 GTTISIQSFVFVMAKGEN------------HYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHS 235 (686)
Q Consensus 168 G~tIsVh~FVyv~aee~~------------~~vAYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~~~~~~rEvf~s~~~ 235 (686)
|-+|+|-|+|+|-..+.. -||++||-|+|+..|.||+.+|||-+..|--+.- -+++||||+|.+-
T Consensus 3 ~~~i~vGD~V~v~~d~~~~~~~~~~~~~~~~~i~~V~~~~e~~~g~~~~h~~W~yrp~eTv~g~---~~~~~ElFLSd~c 79 (130)
T cd04712 3 GLTIRVGDVVSVERDDADSTTKWNDDHRWLPLVQFVEYMKKGSDGSKMFHGRWLYRGCDTVLGN---YANERELFLTNEC 79 (130)
T ss_pred CCEEeCCCEEEEcCCCCCccccccccccccceEEEEEEeeecCCCceEEEEEEEEcchhccccc---cCCCceEEEeccc
Confidence 678999999999998865 4899999999999999999999999999864433 5699999999999
Q ss_pred eeeeee----eeeccccccChHHHHHHHhhccccceeeEEEEEeecc
Q 044464 236 QVISAE----CVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFR 278 (686)
Q Consensus 236 Q~isvE----CiDG~AtVLtp~H~ek~~~~~~~~~~~~~~~C~rq~~ 278 (686)
.+++++ +|-|.+.|---..+++ ......|+|+.-+.
T Consensus 80 ~~~~~~~~~~~I~~k~~V~~~~~~~~-------~~~~~~F~r~syy~ 119 (130)
T cd04712 80 TCLELDLLSTEIKGVHKVDWSGTPWG-------KGLPEFFVRQSYYW 119 (130)
T ss_pred cccccccccceeEEEEEEEEecCcCC-------cCCCCEEEEEEEEC
Confidence 999999 9999999973333332 12334566766554
No 20
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.60 E-value=1.1e-07 Score=94.16 Aligned_cols=112 Identities=15% Similarity=0.229 Sum_probs=90.5
Q ss_pred CCeEEEEeeEEEEEecC-CceeEeeehhhhcccC-CCeeEEEEeeeccceeeeeecCCCC--------CCceEEEcCCce
Q 044464 167 NGTTISIQSFVFVMAKG-ENHYVAYLEDMYEDKR-GQKKVKVRWFHHNQEVKGVVSLRNP--------HPKEVFITPHSQ 236 (686)
Q Consensus 167 nG~tIsVh~FVyv~aee-~~~~vAYlEDmYED~k-g~k~V~VRWFh~~~Ev~~~lp~~~~--------~~rEvf~s~~~Q 236 (686)
.|++|.|-|-|.|-+++ ..-+||-|..+.++.. ..++|.|+||-+.+|+...-....+ ++-|||+|+++-
T Consensus 49 d~~~~~vGD~Vlik~~~~~~~~V~iI~ei~~~~~~~~v~i~v~Wy~r~~Ei~~~~~~~~~~~~~~~~~~~nElflT~~~d 128 (179)
T cd04720 49 DGLELSVGDTILVKDDVANSPSVYLIHEIRLNTLNNEVELWVMWFLRWFEINPARYYKQFDPEFRSESNKNELYLTAELS 128 (179)
T ss_pred CCeEEeCCCEEEEeCCCCCCCEEEEEEEEEeCCCCCEEEEEEEEcCCHHHcccccccccccchhcccCCCceEEEecccc
Confidence 68999999999999976 6689999999999987 4469999999999998542111122 368999999999
Q ss_pred eeeeeeeeccccccChHHHHHHHhhccccceeeEEEEEeeccCC
Q 044464 237 VISAECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSN 280 (686)
Q Consensus 237 ~isvECiDG~AtVLtp~H~ek~~~~~~~~~~~~~~~C~rq~~n~ 280 (686)
.|.+.+|-|.|+|||-+.|++.-... ......|+|++-++..
T Consensus 129 ~i~l~~Ii~k~~Vls~~ef~~~~~~~--~~~~~~F~cR~~~d~~ 170 (179)
T cd04720 129 EIKLKDIIDKANVLSESEFNDLSTDD--KNGERTFFCRYACEPD 170 (179)
T ss_pred eEEhhheeeeEEEecHHHhhhhcccc--cCCCceEEEEEEEeCC
Confidence 99999999999999999998843221 1234579999999854
No 21
>KOG1886 consensus BAH domain proteins [Transcription]
Probab=98.32 E-value=2.3e-07 Score=102.67 Aligned_cols=139 Identities=24% Similarity=0.416 Sum_probs=112.7
Q ss_pred cccccccccccCCeEEEEeeEEEEEecC--CceeEeeehhhhcccC-CCeeEEEEeeecccee--eeeecCCCCCCceEE
Q 044464 156 KQLKHFPAFCRNGTTISIQSFVFVMAKG--ENHYVAYLEDMYEDKR-GQKKVKVRWFHHNQEV--KGVVSLRNPHPKEVF 230 (686)
Q Consensus 156 Kr~kHY~sF~RnG~tIsVh~FVyv~aee--~~~~vAYlEDmYED~k-g~k~V~VRWFh~~~Ev--~~~lp~~~~~~rEvf 230 (686)
|++++++.+.+-|.+|.+-|+|...++. ..-||||+|+||.+.+ ++.||.|+||-+..|+ ++.+-.+.-++||+|
T Consensus 36 k~~h~~t~~~~~g~~~~~~d~vllvped~~~pPyvaii~~i~a~~~g~~~k~ev~W~YrPee~~~~~~~~~~a~~~relF 115 (464)
T KOG1886|consen 36 KSLHFETFIYRGGRYINYGDSVLLVPEDPGKPPYVAIIEDIYAQERGGNVKVEVQWFYRPEESEGGGSGKWGAKQPRELF 115 (464)
T ss_pred ccccccceeeccCcccccCcceeecCCCCCCCCeeEEEeeeeccccCCCcceecccccCCCccCCCCCCCcccCCCcccc
Confidence 6777788888999999988888888887 6789999999999999 5999999999999998 333333688999999
Q ss_pred EcCCceeeeeeeeeccccccChHHHHHHHhhccccceeeEEEEEeeccCC--CccceeeccccccchhhH
Q 044464 231 ITPHSQVISAECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSN--RLKPFDLSKLHGYHDQPI 298 (686)
Q Consensus 231 ~s~~~Q~isvECiDG~AtVLtp~H~ek~~~~~~~~~~~~~~~C~rq~~n~--~vKpFditql~GY~~QeI 298 (686)
+|.+.-.+.+|-|-+..-|..=.-|.. +|+...-.-|+|.+-||+. .+++|...++.+=-.++|
T Consensus 116 ~SfH~De~~A~ti~~rC~V~fvp~~kq----lp~~~~~~~f~~r~vYd~~~~~~~~~~~~~~~~~~k~e~ 181 (464)
T KOG1886|consen 116 LSFHEDEAFAETILHRCKVHFVPAYKQ----LPNRVGHESFICRRVYDAVTSKLRKLRDGDFGDGQKLEI 181 (464)
T ss_pred ccccccchhhhhhcccceeeecccccc----ccccCCCCCcccccccccccccccCccccchhcccccCC
Confidence 999999999999999999987555554 4444444559999999976 777777766655555554
No 22
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.45 E-value=0.00035 Score=55.67 Aligned_cols=54 Identities=28% Similarity=0.580 Sum_probs=45.1
Q ss_pred CCCCCCEEEEEecCCcceeeEEEEEEEEeeC-CeEEEEeCcccCCCCCCcceEEEecccccCCCccCCCCCCCCCcCCCC
Q 044464 395 MYKVNAKIELLCQDSGIRGCWFRCIVLQVSQ-KQMKVRYDDVQDEDGSGNLEEWIPVYKVAKPDKLGMRCSDRPTIRPTP 473 (686)
Q Consensus 395 ~FkvG~~VEV~S~EeGfrGsWF~AtVIk~~~-~ky~VeY~dL~deDgs~~L~EwV~~sr~a~pd~~g~R~~~R~~IRP~P 473 (686)
.|++|+.|.+.. + .|.||+|+|+++.. +.+.|.|.|+-+ .|+|+.. .|||.|
T Consensus 2 ~~~~G~~~~a~~-~---d~~wyra~I~~~~~~~~~~V~f~D~G~-------~~~v~~~----------------~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARW-E---DGEWYRARIIKVDGEQLYEVFFIDYGN-------EEVVPPS----------------DLRPLP 54 (57)
T ss_pred CCCCCCEEEEEe-C---CCCEEEEEEEEECCCCEEEEEEECCCc-------cEEEeHH----------------HeecCC
Confidence 578999999997 4 58999999999877 899999999743 4788854 789988
Q ss_pred CC
Q 044464 474 PD 475 (686)
Q Consensus 474 P~ 475 (686)
+.
T Consensus 55 ~~ 56 (57)
T smart00333 55 EE 56 (57)
T ss_pred CC
Confidence 73
No 23
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.04 E-value=0.0069 Score=58.34 Aligned_cols=67 Identities=12% Similarity=0.233 Sum_probs=55.6
Q ss_pred ceeEeeehhhhcccCCC-e------eEEEEeeeccceeeeeecCCCCCC-ceEEEcCCceeeeeeeeeccccccC
Q 044464 185 NHYVAYLEDMYEDKRGQ-K------KVKVRWFHHNQEVKGVVSLRNPHP-KEVFITPHSQVISAECVDGSASVLT 251 (686)
Q Consensus 185 ~~~vAYlEDmYED~kg~-k------~V~VRWFh~~~Ev~~~lp~~~~~~-rEvf~s~~~Q~isvECiDG~AtVLt 251 (686)
==+||+|+.++-+++++ | ||+||||=++.++..-...---.+ ||||.|.+.-+++++-|-|-++|.=
T Consensus 26 Py~VgrI~eI~~~k~~~~k~~~~~ikvrV~~fYRPEdi~~g~~~ayhsDirevy~Sd~~~~~~~~~I~GKC~V~~ 100 (137)
T cd04711 26 PFRIGRIKEIFCAKRSNGKPNESDIKLRINKFYRPENTHKGFKATYHADINMLYWSDEEATVDFSAVQGRCTVEY 100 (137)
T ss_pred CcEEEEEEEEecCCCCCCCCCccceEEEEEEEecccccccccccccccceeeEEeecceeecChhhccceEEEEe
Confidence 34799999999988776 1 799999999999877544212245 9999999999999999999999993
No 24
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=95.99 E-value=0.019 Score=45.71 Aligned_cols=51 Identities=25% Similarity=0.438 Sum_probs=44.8
Q ss_pred CcCCCCEEEEee-CCCeeEEEEEEEecCCCCeEEEEECCcceEEEeecCCCcce
Q 044464 481 SLGIGTAVDAWW-SDGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKNDLRIS 533 (686)
Q Consensus 481 ~~~vGD~VDAw~-~DGWWeGVV~kv~~~g~~ky~VyFpGe~del~f~~sdLRps 533 (686)
.|++|+.|=|.+ ++.|..|+|+++. ++..|.|+|.+-|....+..++||+-
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~--~~~~~~V~f~D~G~~~~v~~~~l~~l 53 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVD--GEQLYEVFFIDYGNEEVVPPSDLRPL 53 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEEC--CCCEEEEEEECCCccEEEeHHHeecC
Confidence 488999999999 9999999999996 34899999998788888999999873
No 25
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=95.62 E-value=0.027 Score=47.54 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=33.5
Q ss_pred cCCCCEEEEee-----CCCeeEEEEEEEecCCCCeEEEEEC------Ccc--eEEEeecCCCcceeee
Q 044464 482 LGIGTAVDAWW-----SDGWWEGVVIGVDSSSTDNLQVYLS------GES--LFLNVNKNDLRISRDW 536 (686)
Q Consensus 482 ~~vGD~VDAw~-----~DGWWeGVV~kv~~~g~~ky~VyFp------Ge~--del~f~~sdLRpsldW 536 (686)
|+.|+.||+.. .++|+.|+|++.. +.++|.|.+. +.. -.-.+...+|||.--.
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~--~~~~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~pP~ 66 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKEN--GDDKYLVEYDDLPDEDGESPPLKEWVDARRIRPCPPP 66 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEE--TT-EEEEEETT-SS--------EEEEEGGGEEE----
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeC--CCcEEEEEECCcccccccccccEEEechheEECcCcC
Confidence 67999999998 8899999999986 3449999885 222 2556778889987543
No 26
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=95.41 E-value=0.17 Score=47.85 Aligned_cols=93 Identities=23% Similarity=0.290 Sum_probs=64.1
Q ss_pred CCEEEEEecCCcceeeEEEEEEEEe-eCCeEEEEeCcccCCCCCCcceEEEecccccCCCccCCCCCCCCCcCCCCCCCC
Q 044464 399 NAKIELLCQDSGIRGCWFRCIVLQV-SQKQMKVRYDDVQDEDGSGNLEEWIPVYKVAKPDKLGMRCSDRPTIRPTPPDNR 477 (686)
Q Consensus 399 G~~VEV~S~EeGfrGsWF~AtVIk~-~~~ky~VeY~dL~deDgs~~L~EwV~~sr~a~pd~~g~R~~~R~~IRP~PP~~~ 477 (686)
|+.|=.+++++|| ||+|+|++. +...++|++.+ ...+.|+.. .|-+.-+.
T Consensus 1 g~~VlAR~~~DG~---YY~GtV~~~~~~~~~lV~f~~--------~~~~~v~~~----------------~iI~~~~~-- 51 (124)
T PF15057_consen 1 GQKVLARREEDGF---YYPGTVKKCVSSGQFLVEFDD--------GDTQEVPIS----------------DIIALSDA-- 51 (124)
T ss_pred CCeEEEeeCCCCc---EEeEEEEEccCCCEEEEEECC--------CCEEEeChH----------------HeEEccCc--
Confidence 7889999999988 899999995 77899999932 124555543 22222221
Q ss_pred CCCCcCCCCEEEEee---CCCeeEEEEEEEe---cCCCCeEEEEECCcc
Q 044464 478 EDLSLGIGTAVDAWW---SDGWWEGVVIGVD---SSSTDNLQVYLSGES 520 (686)
Q Consensus 478 ~~~~~~vGD~VDAw~---~DGWWeGVV~kv~---~~g~~ky~VyFpGe~ 520 (686)
....+++||.|=|-+ +..|=.|+|+... ...+..|+|.|-...
T Consensus 52 ~~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f~ng~ 100 (124)
T PF15057_consen 52 MRHSLQVGDKVLAPWEPDDCRYGPGTVIAGPERRASEDKEYTVRFYNGK 100 (124)
T ss_pred ccCcCCCCCEEEEecCcCCCEEeCEEEEECccccccCCceEEEEEECCC
Confidence 134577899888877 4568889999621 125788999886433
No 27
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=95.31 E-value=0.045 Score=44.59 Aligned_cols=48 Identities=23% Similarity=0.591 Sum_probs=36.6
Q ss_pred CCCCCEEEEEecCCcceeeEEEEEEEEeeC----CeEEEEeCcccCCCCCCcceEEEeccc
Q 044464 396 YKVNAKIELLCQDSGIRGCWFRCIVLQVSQ----KQMKVRYDDVQDEDGSGNLEEWIPVYK 452 (686)
Q Consensus 396 FkvG~~VEV~S~EeGfrGsWF~AtVIk~~~----~ky~VeY~dL~deDgs~~L~EwV~~sr 452 (686)
|++|++|-+.- ..|.|++|+|+++.. ..|+|-|...- ..+-|||+.++
T Consensus 1 ~~vG~~v~~~~----~~~~~y~A~I~~~r~~~~~~~YyVHY~g~n-----kR~DeWV~~~~ 52 (55)
T PF11717_consen 1 FEVGEKVLCKY----KDGQWYEAKILDIREKNGEPEYYVHYQGWN-----KRLDEWVPESR 52 (55)
T ss_dssp --TTEEEEEEE----TTTEEEEEEEEEEEECTTCEEEEEEETTST-----GCC-EEEETTT
T ss_pred CCcCCEEEEEE----CCCcEEEEEEEEEEecCCCEEEEEEcCCCC-----CCceeeecHHH
Confidence 67999999987 468999999999752 36999999863 35789999763
No 28
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=95.24 E-value=0.057 Score=41.60 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=33.0
Q ss_pred CCEEEEEecCCcceeeEEEEEEEEee-CCeEEEEeCcccCCCCCCcceEEEecc
Q 044464 399 NAKIELLCQDSGIRGCWFRCIVLQVS-QKQMKVRYDDVQDEDGSGNLEEWIPVY 451 (686)
Q Consensus 399 G~~VEV~S~EeGfrGsWF~AtVIk~~-~~ky~VeY~dL~deDgs~~L~EwV~~s 451 (686)
|+.+-++..+ -|.||||+|+++. .+.+.|.|.|+-+ .|.|+.+
T Consensus 1 G~~c~a~~~~---d~~wyra~V~~~~~~~~~~V~f~DyG~-------~~~v~~~ 44 (48)
T cd04508 1 GDLCLAKYSD---DGKWYRAKITSILSDGKVEVFFVDYGN-------TEVVPLS 44 (48)
T ss_pred CCEEEEEECC---CCeEEEEEEEEECCCCcEEEEEEcCCC-------cEEEeHH
Confidence 5667777654 3899999999987 7889999999843 3667653
No 29
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=94.49 E-value=0.074 Score=47.71 Aligned_cols=61 Identities=21% Similarity=0.408 Sum_probs=34.6
Q ss_pred eeeEEEEEEEEeeC--------CeEEEEeCcccCCCCCCcceEEEecccccCCCccCCCCCCCCCcCCCCCCCCCCCCcC
Q 044464 412 RGCWFRCIVLQVSQ--------KQMKVRYDDVQDEDGSGNLEEWIPVYKVAKPDKLGMRCSDRPTIRPTPPDNREDLSLG 483 (686)
Q Consensus 412 rGsWF~AtVIk~~~--------~ky~VeY~dL~deDgs~~L~EwV~~sr~a~pd~~g~R~~~R~~IRP~PP~~~~~~~~~ 483 (686)
.||||.|+|+.+.+ --|.|+|+++... | ...+.. ..|||.--....-..++
T Consensus 9 ~gAWfEa~i~~i~~~~~~~~e~viYhIkyddype~-g----vv~~~~----------------~~iRpRARt~l~w~~L~ 67 (85)
T PF12148_consen 9 MGAWFEAQIVTITKKCMSDDEDVIYHIKYDDYPEN-G----VVEMRS----------------KDIRPRARTILKWDELK 67 (85)
T ss_dssp T-EEEEEEEEEEEES-SSSSTTEEEEEEETT-GGG------EEEEEG----------------GGEEE---SBE-GGG--
T ss_pred CcceEEEEEEEeeccCCCCCCCEEEEEEeccCCCc-C----ceeccc----------------ccccceeeEeccHHhCC
Confidence 59999999998742 2599999998642 1 233443 26888765432235689
Q ss_pred CCCEEEEeeC
Q 044464 484 IGTAVDAWWS 493 (686)
Q Consensus 484 vGD~VDAw~~ 493 (686)
+|+.|=+-||
T Consensus 68 VG~~VMvNYN 77 (85)
T PF12148_consen 68 VGQVVMVNYN 77 (85)
T ss_dssp TT-EEEEEE-
T ss_pred cccEEEEecC
Confidence 9999977765
No 30
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=93.12 E-value=0.21 Score=38.49 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=38.4
Q ss_pred CCEEEEeeC--CCeeEEEEEEEecCCCCeEEEEECCcceEEEeecCCCcc
Q 044464 485 GTAVDAWWS--DGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKNDLRI 532 (686)
Q Consensus 485 GD~VDAw~~--DGWWeGVV~kv~~~g~~ky~VyFpGe~del~f~~sdLRp 532 (686)
|+.|=|.+. +.|..|+|.++. .+..+.|+|.+-|....+..++||+
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~--~~~~~~V~f~DyG~~~~v~~~~l~~ 48 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSIL--SDGKVEVFFVDYGNTEVVPLSDLRP 48 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEEC--CCCcEEEEEEcCCCcEEEeHHHcCC
Confidence 677788776 899999999995 3788999999877777788888885
No 31
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=92.47 E-value=0.65 Score=38.74 Aligned_cols=49 Identities=29% Similarity=0.510 Sum_probs=37.5
Q ss_pred CCcCCCCEEEEeeCC--CeeEEEEEEEecCCCCeEEEEECCcceEEEeecCCC
Q 044464 480 LSLGIGTAVDAWWSD--GWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKNDL 530 (686)
Q Consensus 480 ~~~~vGD~VDAw~~D--GWWeGVV~kv~~~g~~ky~VyFpGe~del~f~~sdL 530 (686)
..|..|+.|.+||-+ -|.+|.|+... .....|+|.|.. |.++++...++
T Consensus 4 ~k~~~Ge~V~~rWP~s~lYYe~kV~~~d-~~~~~y~V~Y~D-Gtel~lke~di 54 (55)
T PF09465_consen 4 RKFAIGEVVMVRWPGSSLYYEGKVLSYD-SKSDRYTVLYED-GTELELKENDI 54 (55)
T ss_dssp SSS-SS-EEEEE-TTTS-EEEEEEEEEE-TTTTEEEEEETT-S-EEEEECCCE
T ss_pred ccccCCCEEEEECCCCCcEEEEEEEEec-ccCceEEEEEcC-CCEEEeccccc
Confidence 468999999999977 68999999985 568899999986 66688887775
No 32
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=91.42 E-value=2.4 Score=40.63 Aligned_cols=106 Identities=14% Similarity=0.226 Sum_probs=66.4
Q ss_pred CCCCEEEEEecCCcceeeEEEEEEEEeeC--CeEEEEeCcccCCCCCCcceEEEecccccCCCccCCCCCCCCCcCCCCC
Q 044464 397 KVNAKIELLCQDSGIRGCWFRCIVLQVSQ--KQMKVRYDDVQDEDGSGNLEEWIPVYKVAKPDKLGMRCSDRPTIRPTPP 474 (686)
Q Consensus 397 kvG~~VEV~S~EeGfrGsWF~AtVIk~~~--~ky~VeY~dL~deDgs~~L~EwV~~sr~a~pd~~g~R~~~R~~IRP~PP 474 (686)
.+|++|=.+-...+-.+.|+-|+|++... ++|.|+=.+ +++... .=.++ +..|=|.|.
T Consensus 1 q~G~~VAak~~~~~~~~~WIla~Vv~~~~~~~rYeV~D~d---~~~~~~-~~~~~----------------~~~iIPLP~ 60 (130)
T PF07039_consen 1 QPGDQVAAKVKQGNEEEEWILAEVVKYNSDGNRYEVEDPD---PEEEKK-RYKLS----------------RKQIIPLPK 60 (130)
T ss_dssp -TT-EEEEEECTTTTTCEEEEEEEEEEETTTTEEEEEETT---TCTTTE-EEEEE----------------GGGEEEE-S
T ss_pred CCCCEEEEEcCCCCCCCCEEEEEEEEEeCCCCEEEEecCC---CCCCCc-eEEeC----------------HHHEEECCC
Confidence 37888888766555669999999999754 478887333 121111 22222 225566665
Q ss_pred ----CCCCCCCcCCCCEEEEeeCC--CeeEEEEEEEecCCCCeEEEEECCcceE
Q 044464 475 ----DNREDLSLGIGTAVDAWWSD--GWWEGVVIGVDSSSTDNLQVYLSGESLF 522 (686)
Q Consensus 475 ----~~~~~~~~~vGD~VDAw~~D--GWWeGVV~kv~~~g~~ky~VyFpGe~de 522 (686)
.......|..|+.|=|.|=+ +...++|...-....+.|.|.|.|+.+.
T Consensus 61 ~~~~~~~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~ 114 (130)
T PF07039_consen 61 KAPPDTDPLAEFPKGTKVLALYPDTTCFYPATVVSPPKKKSGEYKLKFEDDEDA 114 (130)
T ss_dssp B--TTT-GGGS--TT-EEEEE-TTSSEEEEEEEEEE-SSTTS-EEEEECTTTST
T ss_pred ccCCCCCchhhCCCCCEEEEECCCCceEEEEEEEeCCCCCCCcEEEEEeCCCCc
Confidence 22234689999999999887 9999999998444678999999986553
No 33
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=91.15 E-value=0.53 Score=40.36 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=40.7
Q ss_pred cCCCCEEEEeeCC-CeeEEEEEEEec-----CCCCeEEEEECCcceEEEeecCCCccee
Q 044464 482 LGIGTAVDAWWSD-GWWEGVVIGVDS-----SSTDNLQVYLSGESLFLNVNKNDLRISR 534 (686)
Q Consensus 482 ~~vGD~VDAw~~D-GWWeGVV~kv~~-----~g~~ky~VyFpGe~del~f~~sdLRpsl 534 (686)
|.+||.|=|-..+ .||.|+|+.... .....|.|+|-|+.+..-+..++|+|-.
T Consensus 1 f~~GdlVWaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~i~~f~ 59 (86)
T PF00855_consen 1 FRPGDLVWAKLKGYPWWPARVCDPDEKSKKKRKDGHVLVRFFGDNDYAWVKPSNIKPFS 59 (86)
T ss_dssp -STTEEEEEEETTSEEEEEEEEECCHCTSCSSSSTEEEEEETTTTEEEEEEGGGEEECC
T ss_pred CCCCCEEEEEeCCCCCCceEEeecccccccCCCCCEEEEEecCCCCEEEECHHHhhChh
Confidence 5789999886654 799999999742 2467899999999887777777777643
No 34
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=89.95 E-value=2 Score=39.07 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=41.3
Q ss_pred ccCCCCCCEEEEEecCCcceeeEEEEEEEEeeCCeEEEEeCcccCCCCCCcceEEEecc
Q 044464 393 SAMYKVNAKIELLCQDSGIRGCWFRCIVLQVSQKQMKVRYDDVQDEDGSGNLEEWIPVY 451 (686)
Q Consensus 393 ~~~FkvG~~VEV~S~EeGfrGsWF~AtVIk~~~~ky~VeY~dL~deDgs~~L~EwV~~s 451 (686)
...|++|.++|+.-... -..+..|||+++.+.+++|.|+...+. -..|++..
T Consensus 25 ~~~F~vGmkLEavD~~~--~~~i~vAtV~~v~g~~l~v~~dg~~~~-----~D~W~~~~ 76 (96)
T smart00561 25 PNGFKVGMKLEAVDPRN--PSLICVATVVEVKGYRLLLHFDGWDDK-----YDFWCDAD 76 (96)
T ss_pred cCcccCCCEEEEECCCC--CceEEEEEEEEEECCEEEEEEccCCCc-----CCEEEECC
Confidence 46799999999985532 468889999999999999999987321 24899864
No 35
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=89.33 E-value=1.3 Score=37.08 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=30.2
Q ss_pred ccCCCCCCEEEEEecCCcceeeEEEEEEEEee--CCeEEEEeCc
Q 044464 393 SAMYKVNAKIELLCQDSGIRGCWFRCIVLQVS--QKQMKVRYDD 434 (686)
Q Consensus 393 ~~~FkvG~~VEV~S~EeGfrGsWF~AtVIk~~--~~ky~VeY~d 434 (686)
.+.|..|+.|.++--.+ ..||.|+|++.+ .+.|.|.|.|
T Consensus 3 ~~k~~~Ge~V~~rWP~s---~lYYe~kV~~~d~~~~~y~V~Y~D 43 (55)
T PF09465_consen 3 SRKFAIGEVVMVRWPGS---SLYYEGKVLSYDSKSDRYTVLYED 43 (55)
T ss_dssp SSSS-SS-EEEEE-TTT---S-EEEEEEEEEETTTTEEEEEETT
T ss_pred cccccCCCEEEEECCCC---CcEEEEEEEEecccCceEEEEEcC
Confidence 46899999999997765 589999999964 6899999987
No 36
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=88.08 E-value=0.94 Score=39.51 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=43.8
Q ss_pred cCCCCEEEEeeCC-CeeEEEEEEEecC--------CCCeEEEEECCcceEEEeecCCCcceeeec
Q 044464 482 LGIGTAVDAWWSD-GWWEGVVIGVDSS--------STDNLQVYLSGESLFLNVNKNDLRISRDWA 537 (686)
Q Consensus 482 ~~vGD~VDAw~~D-GWWeGVV~kv~~~--------g~~ky~VyFpGe~del~f~~sdLRpsldW~ 537 (686)
|.+||.|=|=..+ .||.|+|+..... .++.|.|+|-|+.+..-+..++|+|-..-.
T Consensus 1 f~~GdlVwaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~l~pf~~~~ 65 (87)
T cd05162 1 FRPGDLVWAKMKGYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFGDKTFAWVGAERLKPFTEHK 65 (87)
T ss_pred CCCCCEEEEeCCCCCCCCEEEccccccchhhhccCCCCEEEEEEeCCCcEEEeCccceeeccchH
Confidence 5789999887777 9999999997532 136899999888888778888887765544
No 37
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=87.97 E-value=0.61 Score=41.39 Aligned_cols=56 Identities=20% Similarity=0.330 Sum_probs=44.4
Q ss_pred cCCCCEEEEeeCC-CeeEEEEEEEecC-----CCCeEEEEECCcceEEEeecCCCcceeeec
Q 044464 482 LGIGTAVDAWWSD-GWWEGVVIGVDSS-----STDNLQVYLSGESLFLNVNKNDLRISRDWA 537 (686)
Q Consensus 482 ~~vGD~VDAw~~D-GWWeGVV~kv~~~-----g~~ky~VyFpGe~del~f~~sdLRpsldW~ 537 (686)
|.+||.|=|=..+ .||.|.|+..... ..+.+.|+|=|+++..-+.+++|.|-.+..
T Consensus 1 f~vGDlVWaK~kg~pwWP~~V~~~~~~~~~~~~~~~~~V~fFGs~~~a~v~~~~l~pf~e~~ 62 (87)
T cd05835 1 FNVGDLVWGKIKGFPWWPGRVVSITVTSKRPPVVGMRWVTWFGSGTFSEVSVDKLSPFSEFF 62 (87)
T ss_pred CCCCCEEEEecCCCCCCCeEEechhhcccccCCCCeEEEEEeCCCCEeEECHHHCcChhHhH
Confidence 5789999886555 9999999986321 245699999999998888999998877654
No 38
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=87.06 E-value=1.4 Score=36.78 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=42.0
Q ss_pred cCCCCEEEEeeCC-CeeEEEEEEEecC---------CCCeEEEEECCcceEEEeecCCCcc
Q 044464 482 LGIGTAVDAWWSD-GWWEGVVIGVDSS---------STDNLQVYLSGESLFLNVNKNDLRI 532 (686)
Q Consensus 482 ~~vGD~VDAw~~D-GWWeGVV~kv~~~---------g~~ky~VyFpGe~del~f~~sdLRp 532 (686)
|++||.|=|=..+ .||.|.|+.-... .+..|.|+|-|+.+..-+..++|.|
T Consensus 1 f~~GdlVwaK~~G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~awv~~~~l~p 61 (63)
T smart00293 1 FKPGDLVWAKMKGFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDKDTAWISSSKLFP 61 (63)
T ss_pred CCCCCEEEEECCCCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCCCEEEECccceee
Confidence 5789999997777 9999999886421 2568999999999988888888876
No 39
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=86.76 E-value=1.7 Score=46.07 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=42.3
Q ss_pred CCCcCCCCEEEEee--CCCeeEEEEEEEecCCCCeEEEEECCcceEEEeecCCCcceeeec
Q 044464 479 DLSLGIGTAVDAWW--SDGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKNDLRISRDWA 537 (686)
Q Consensus 479 ~~~~~vGD~VDAw~--~DGWWeGVV~kv~~~g~~ky~VyFpGe~del~f~~sdLRpsldW~ 537 (686)
...|+|||..-|.| +|.|.+++|..|. ...+.+.|.|.|=+..-++...+|+|.-...
T Consensus 66 ~~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~-~~~~~~~V~f~gYgn~e~v~l~dL~~~~~~~ 125 (264)
T PF06003_consen 66 NKKWKVGDKCMAVYSEDGQYYPATIESID-EEDGTCVVVFTGYGNEEEVNLSDLKPSEGDV 125 (264)
T ss_dssp TT---TT-EEEEE-TTTSSEEEEEEEEEE-TTTTEEEEEETTTTEEEEEEGGGEEETT---
T ss_pred ccCCCCCCEEEEEECCCCCEEEEEEEEEc-CCCCEEEEEEcccCCeEeeehhhhccccccc
Confidence 35799999999977 5579999999996 4567999999987777778899999987663
No 40
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=86.45 E-value=2 Score=37.49 Aligned_cols=48 Identities=17% Similarity=0.328 Sum_probs=34.6
Q ss_pred cCCCCCCEEEEEecCCcceeeEEEEEE-EEeeCCeEEEEeCcccCCCCCCcceEEEecc
Q 044464 394 AMYKVNAKIELLCQDSGIRGCWFRCIV-LQVSQKQMKVRYDDVQDEDGSGNLEEWIPVY 451 (686)
Q Consensus 394 ~~FkvG~~VEV~S~EeGfrGsWF~AtV-Ik~~~~ky~VeY~dL~deDgs~~L~EwV~~s 451 (686)
....+|..+=+....+| .|+||+| .....+.+.|.|-|+-. .++|..+
T Consensus 50 ~~~~~~~~~~~~~~~~~---~w~Ra~I~~~~~~~~~~V~~iD~G~-------~~~v~~~ 98 (121)
T PF00567_consen 50 PESNPGEGCLCVVSEDG---RWYRAVITVDIDENQYKVFLIDYGN-------TEKVSAS 98 (121)
T ss_dssp ST--TTEEEEEEETTTS---EEEEEEEEEEECTTEEEEEETTTTE-------EEEEEGG
T ss_pred cccccCCEEEEEEecCC---ceeeEEEEEecccceeEEEEEecCc-------eEEEcHH
Confidence 34567777776666554 9999999 55678999999999732 5778865
No 41
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=85.34 E-value=0.89 Score=53.44 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=95.8
Q ss_pred ccccc-cccCCeEEEEeeEEEEEecCC--ceeEeeehhhhcccCCCeeEEEEeeeccceeeeeecCCCCCCceEEEcCCc
Q 044464 159 KHFPA-FCRNGTTISIQSFVFVMAKGE--NHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHS 235 (686)
Q Consensus 159 kHY~s-F~RnG~tIsVh~FVyv~aee~--~~~vAYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~~~~~~rEvf~s~~~ 235 (686)
.|++. --=+|+...|-|+|||-..++ .-.|+.+|-+|++..|.|=+...||-+..| +.-+.-+.|...|||-|..-
T Consensus 178 ~~~~~~~~i~~~~~~~gd~vlv~~~~d~~~p~v~~Ier~w~~~dg~k~~~~~w~~rP~~-T~H~a~r~F~k~Evfkt~~~ 256 (629)
T KOG1827|consen 178 YHELGPVEIDGTKYIVGDYVLVQNPADNLKPIVAQIERLWKLPDGEKWPQGCWIYRPEE-TVHRADRKFYKQEVFKTSLY 256 (629)
T ss_pred cccCCCccccCcccccCceeeecCcccccCCceeeecccccCcccccccceeEeeCCcc-Cccccccchhcccceecccc
Confidence 34444 345788899999999977765 556999999999999999999999999997 55555689999999999999
Q ss_pred eeeeeeeeeccccccChHHHHHHHhhccccce-eeEEEEEeeccC
Q 044464 236 QVISAECVDGSASVLTREHFSKCLAAFPNALL-ARVHLCTRQFRS 279 (686)
Q Consensus 236 Q~isvECiDG~AtVLtp~H~ek~~~~~~~~~~-~~~~~C~rq~~n 279 (686)
++..+.=|=|-.+|+.+-.|-+ .-|...+ +-.|||-+-|.-
T Consensus 257 ~~~~~q~l~g~c~v~~~~~yi~---~~p~~ls~~dv~lcesRyn~ 298 (629)
T KOG1827|consen 257 RDDLVQRLLGKCYVMKPTEYIS---GDPENLSEEDVFLCESRYNE 298 (629)
T ss_pred cccHHHHhhcceEEeehhHhhh---cCcccccccceeeEEeeecc
Confidence 9999999999999998877755 3344443 456999987753
No 42
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=84.56 E-value=1.8 Score=38.39 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=45.9
Q ss_pred CcCCCCEEEEeeCC-CeeEEEEEEEec--CCCCeEEEEECCcceEEEeecCCCcceeeec
Q 044464 481 SLGIGTAVDAWWSD-GWWEGVVIGVDS--SSTDNLQVYLSGESLFLNVNKNDLRISRDWA 537 (686)
Q Consensus 481 ~~~vGD~VDAw~~D-GWWeGVV~kv~~--~g~~ky~VyFpGe~del~f~~sdLRpsldW~ 537 (686)
.|.+||.|=|=..| -||.|.|+.... ....+|.|+|-|+++..-+..++|.|-.+..
T Consensus 2 ~f~~GdlVwaK~kGyp~WPa~I~~~~~~~~~~~~~~V~FfGt~~~a~v~~~~l~pf~~~~ 61 (83)
T cd05834 2 QFKAGDLVFAKVKGYPAWPARVDEPEDWKPPGKKYPVYFFGTHETAFLKPEDLFPYTENK 61 (83)
T ss_pred CCCCCCEEEEecCCCCCCCEEEecccccCCCCCEEEEEEeCCCCEeEECHHHceecccch
Confidence 48899999986555 999999999742 2257999999999998888888888776643
No 43
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=82.92 E-value=2.5 Score=37.61 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=36.7
Q ss_pred cCCCCEEEEeeCC-CeeEEEEEEEecCCCCeEEEEECCcc-eEEEeecCCCcc
Q 044464 482 LGIGTAVDAWWSD-GWWEGVVIGVDSSSTDNLQVYLSGES-LFLNVNKNDLRI 532 (686)
Q Consensus 482 ~~vGD~VDAw~~D-GWWeGVV~kv~~~g~~ky~VyFpGe~-del~f~~sdLRp 532 (686)
|.+||.|=|=..+ -||.|+|..+. .+..+|.|+|-|+. ..-....++|-|
T Consensus 1 f~~gdlVWaK~~g~P~WPa~I~~~~-~~~~k~~V~FfG~~~~~a~~~~~~l~p 52 (80)
T cd06080 1 FEKNDLVWAKIQGYPWWPAVIKSIS-RKKQKARVNFIGDNMQSEKKGIRVVKR 52 (80)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeeec-CCCCEEEEEEeCCCCceeccchhhccc
Confidence 5789999885444 89999999985 46789999999887 433344455433
No 44
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=80.30 E-value=3.5 Score=36.71 Aligned_cols=56 Identities=14% Similarity=0.235 Sum_probs=43.4
Q ss_pred cCCCCEEEEeeCC-CeeEEEEEEEec------CCCCeEEEEECCcceEEEeecCCCcceeeec
Q 044464 482 LGIGTAVDAWWSD-GWWEGVVIGVDS------SSTDNLQVYLSGESLFLNVNKNDLRISRDWA 537 (686)
Q Consensus 482 ~~vGD~VDAw~~D-GWWeGVV~kv~~------~g~~ky~VyFpGe~del~f~~sdLRpsldW~ 537 (686)
|++||.|=|=..+ -||.|+|+.-.. ...+.|.|+|-|+++..-+..++|.|-.+..
T Consensus 1 f~~GDlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~V~FFG~~~~~wv~~~~l~pF~~~~ 63 (86)
T cd05836 1 LKLGDLVWAKMKGFPPWPGRIVKPPKDLKKPRGKAKCFFVFFFGSENHAWIKEENIKPYHEHK 63 (86)
T ss_pred CCCCCEEEEeCCCCCCCCEEEechhhhcccccCCCCeEEEEEeCCCCEEEECHHhCeechhhH
Confidence 5789999886555 999999987321 1236799999999998888888988877643
No 45
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=77.84 E-value=4.2 Score=36.80 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=40.6
Q ss_pred cCCCCEEEEeeCC-CeeEEEEEEEe-----------cCCCCeEEEEECCcceEEEeecCCCccee
Q 044464 482 LGIGTAVDAWWSD-GWWEGVVIGVD-----------SSSTDNLQVYLSGESLFLNVNKNDLRISR 534 (686)
Q Consensus 482 ~~vGD~VDAw~~D-GWWeGVV~kv~-----------~~g~~ky~VyFpGe~del~f~~sdLRpsl 534 (686)
|.+||.|=|=..| -||.|+|+.-. ......|.|.|-|+.+..-+...+|.|-.
T Consensus 1 f~~GDlVwaK~~GyPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg~~~~~Wv~~~~l~pl~ 65 (93)
T cd05840 1 FQPGDRVLAKVKGFPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFPDGDYYWVPNKDLKPLT 65 (93)
T ss_pred CCCCCEEEEeCCCCCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeCCCcEEEEChhhcccCC
Confidence 5789999886665 89999998621 12467899999888888878888887754
No 46
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=71.36 E-value=45 Score=35.83 Aligned_cols=110 Identities=16% Similarity=0.168 Sum_probs=68.1
Q ss_pred cCCCCCCEEEEEecCCcceeeEEEEEEEEeeCCe-EEEEeCcccCCCCCCcceEEEecccccCCCccCCCCCCCCCcCCC
Q 044464 394 AMYKVNAKIELLCQDSGIRGCWFRCIVLQVSQKQ-MKVRYDDVQDEDGSGNLEEWIPVYKVAKPDKLGMRCSDRPTIRPT 472 (686)
Q Consensus 394 ~~FkvG~~VEV~S~EeGfrGsWF~AtVIk~~~~k-y~VeY~dL~deDgs~~L~EwV~~sr~a~pd~~g~R~~~R~~IRP~ 472 (686)
-...+|+.|-.+.....=.|-|+-|.|+++.... |.++-.|= +.+.+ |.....++ -...|-.+=|.
T Consensus 126 ~~~~~gd~VAa~v~~~~~dg~WIlaeVv~~~~~~~ye~ev~D~----Epk~d-~~g~r~~~--------yklp~~~~~p~ 192 (264)
T KOG3038|consen 126 YVLLKGDEVAARVKAVSEDGDWILAEVVKVSSETRYEFEVVDP----EPKKD-EVGNRGQL--------YKLPRWKLNPI 192 (264)
T ss_pred ccccCCceeeeeeeeccCCCCEEEEEEEEEecCCceEeEecCC----Ccccc-ccccccce--------ecccHhhcCCC
Confidence 4567899998887444444569999999986544 66554332 11111 11110000 00012345555
Q ss_pred CCCCCCCCCcCCCCEEEEeeCC--CeeEEEEEEEecCCCCeEEEEE-CCc
Q 044464 473 PPDNREDLSLGIGTAVDAWWSD--GWWEGVVIGVDSSSTDNLQVYL-SGE 519 (686)
Q Consensus 473 PP~~~~~~~~~vGD~VDAw~~D--GWWeGVV~kv~~~g~~ky~VyF-pGe 519 (686)
||+ -..|.+|..|=|.|-+ |..-|+|..-...+...|.|.| .++
T Consensus 193 p~p---~~~fpp~~~VLA~YP~TTcFY~aiVh~tp~d~s~~y~vlffD~~ 239 (264)
T KOG3038|consen 193 PPP---TALFPPGTIVLAVYPGTTCFYKAIVHSTPRDGSCDYYVLFFDDE 239 (264)
T ss_pred CCC---ccCCCCCCEEEEEcCCcceeeeeEeecCCCCCCCcceeeeecCc
Confidence 553 3569999999999988 9999999997666777788755 443
No 47
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=70.95 E-value=8 Score=34.71 Aligned_cols=52 Identities=15% Similarity=0.113 Sum_probs=41.2
Q ss_pred cCCCCEEEEeeCC-CeeEEEEEEEecCCCCeEEEEECC-cceEEEeecCCCcceeee
Q 044464 482 LGIGTAVDAWWSD-GWWEGVVIGVDSSSTDNLQVYLSG-ESLFLNVNKNDLRISRDW 536 (686)
Q Consensus 482 ~~vGD~VDAw~~D-GWWeGVV~kv~~~g~~ky~VyFpG-e~del~f~~sdLRpsldW 536 (686)
..+||.|=|=..| -||.+.|++. .++.|.|+|=| +.+..-+...+|.|-..-
T Consensus 7 ~~p~dLVwAK~kGyp~WPAkV~~~---~~~~~~V~FFG~t~~~a~v~~~~i~~~~~~ 60 (83)
T cd05841 7 RPPHELVWAKLKGFPYWPAKVMRV---EDNQVDVRFFGGQHDRAWIPSNNIQPISTE 60 (83)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeec---CCCeEEEEEcCCCCCeEEEehHHeeehhhh
Confidence 4467888886666 9999999996 36899999887 888888888888776443
No 48
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=69.88 E-value=6.7 Score=44.83 Aligned_cols=53 Identities=15% Similarity=0.348 Sum_probs=42.1
Q ss_pred ccCCCCCCEEEEEecCCcceeeEEEEEEEEeeC--------CeEEEEeCcccCCCCCCcceEEEecccc
Q 044464 393 SAMYKVNAKIELLCQDSGIRGCWFRCIVLQVSQ--------KQMKVRYDDVQDEDGSGNLEEWIPVYKV 453 (686)
Q Consensus 393 ~~~FkvG~~VEV~S~EeGfrGsWF~AtVIk~~~--------~ky~VeY~dL~deDgs~~L~EwV~~sr~ 453 (686)
...|.+|++|=+... .-|.|+.|+||+... ..|+|-|..+- ..|-|||..+++
T Consensus 51 ~~~~~VGekVla~~~---~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~n-----rRlDEWV~~~rL 111 (450)
T PLN00104 51 MLPLEVGTRVMCRWR---FDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFN-----RRLDEWVKLEQL 111 (450)
T ss_pred cceeccCCEEEEEEC---CCCCEEEEEEEEEeccCCCCCCCceEEEEEecCC-----ccHhhccCHhhc
Confidence 467999999999873 347899999999753 36999999872 367899998765
No 49
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=69.38 E-value=12 Score=39.80 Aligned_cols=48 Identities=15% Similarity=0.271 Sum_probs=35.0
Q ss_pred cCCCCCCEEEEEecCCcceeeEEEEEEEEeeC--CeEEEEeCcccCCCCCCcceEEEecc
Q 044464 394 AMYKVNAKIELLCQDSGIRGCWFRCIVLQVSQ--KQMKVRYDDVQDEDGSGNLEEWIPVY 451 (686)
Q Consensus 394 ~~FkvG~~VEV~S~EeGfrGsWF~AtVIk~~~--~ky~VeY~dL~deDgs~~L~EwV~~s 451 (686)
..++||++....--++| .||+|+|.++.. ..+.|.|..+-+ +|.|.++
T Consensus 67 ~~WkvGd~C~A~~s~Dg---~~Y~A~I~~i~~~~~~~~V~f~gYgn-------~e~v~l~ 116 (264)
T PF06003_consen 67 KKWKVGDKCMAVYSEDG---QYYPATIESIDEEDGTCVVVFTGYGN-------EEEVNLS 116 (264)
T ss_dssp T---TT-EEEEE-TTTS---SEEEEEEEEEETTTTEEEEEETTTTE-------EEEEEGG
T ss_pred cCCCCCCEEEEEECCCC---CEEEEEEEEEcCCCCEEEEEEcccCC-------eEeeehh
Confidence 47899999999987775 699999999874 689999999843 4677765
No 50
>PF02820 MBT: mbt repeat; InterPro: IPR004092 The function of the malignant brain tumor (MBT) repeat is unknown, but is found in a number of nuclear proteins involved in transcriptional repression. The repeat contains a completely conserved glutamate at its amino terminus that may be important for function. The crystal structure of the two MBT repeats of human SCM-like 2 protein has been reported. Each repeat consists of an extended "arm" and a globular core. The arm of the first repeat packs against the core of the second repeat and vice versa. The structure of the core-interacting part of each arm consists of an N-terminal alpha-helix and a turn of 310 helix connected by a short beta-strand. The core consists of an Src homology 3-like five-stranded beta-barrel followed by a C-terminal alpha-helix and another short beta-strand. Each arm interacts with its partner core in a similar way, with the orientation of the N-terminal helix relative to the barrel varying slightly. There are also extensive interactions between the two barrels [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P0K_A 3F70_B 3CEY_A 2VYT_A 2BIV_A 1OI1_A 3OQ5_A 2RJE_B 2RJD_A 2RI3_A ....
Probab=64.69 E-value=24 Score=30.14 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=33.0
Q ss_pred EEEEEecCCcceeeEEEEEEEEeeCCeEEEEeCcccCCCCCCcceEEEecc
Q 044464 401 KIELLCQDSGIRGCWFRCIVLQVSQKQMKVRYDDVQDEDGSGNLEEWIPVY 451 (686)
Q Consensus 401 ~VEV~S~EeGfrGsWF~AtVIk~~~~ky~VeY~dL~deDgs~~L~EwV~~s 451 (686)
++|+....+. .....|||+++.+.+++|+|+...+.. ..|++..
T Consensus 2 kLEa~d~~~~--~~~~vAtV~~v~g~~l~v~~dg~~~~~-----d~w~~~~ 45 (73)
T PF02820_consen 2 KLEAVDPRNP--SLICVATVVKVCGGRLLVRYDGWDDDY-----DFWCHID 45 (73)
T ss_dssp EEEEEETTEC--CEEEEEEEEEEETTEEEEEETTSTGGG-----EEEEETT
T ss_pred eEEEECCCCC--CeEEEEEEEEEeCCEEEEEEcCCCCCc-----cEEEECC
Confidence 5677655432 356799999999988999999875533 6899864
No 51
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=63.48 E-value=20 Score=29.21 Aligned_cols=40 Identities=15% Similarity=0.348 Sum_probs=31.0
Q ss_pred cCCCCEEEEee-CCCeeEEEEEEEecC-CCCeEEEEECCcce
Q 044464 482 LGIGTAVDAWW-SDGWWEGVVIGVDSS-STDNLQVYLSGESL 521 (686)
Q Consensus 482 ~~vGD~VDAw~-~DGWWeGVV~kv~~~-g~~ky~VyFpGe~d 521 (686)
|++|+.|-+.+ ++-|.++.|+++... +...|.|.|.|-+.
T Consensus 1 ~~vG~~v~~~~~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nk 42 (55)
T PF11717_consen 1 FEVGEKVLCKYKDGQWYEAKILDIREKNGEPEYYVHYQGWNK 42 (55)
T ss_dssp --TTEEEEEEETTTEEEEEEEEEEEECTTCEEEEEEETTSTG
T ss_pred CCcCCEEEEEECCCcEEEEEEEEEEecCCCEEEEEEcCCCCC
Confidence 57999999999 999999999999742 22478899988443
No 52
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=60.26 E-value=16 Score=31.73 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=39.7
Q ss_pred cCCCCEEEEeeCCCeeEEEEEEEecCCCCeEEEEECCcceEEEeecCCCcce
Q 044464 482 LGIGTAVDAWWSDGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKNDLRIS 533 (686)
Q Consensus 482 ~~vGD~VDAw~~DGWWeGVV~kv~~~g~~ky~VyFpGe~del~f~~sdLRps 533 (686)
...+..+=+..+++|.-|+|... ..++.+.|+|-+.|....+..++||+-
T Consensus 54 ~~~~~~~~~~~~~~w~Ra~I~~~--~~~~~~~V~~iD~G~~~~v~~~~l~~l 103 (121)
T PF00567_consen 54 PGEGCLCVVSEDGRWYRAVITVD--IDENQYKVFLIDYGNTEKVSASDLRPL 103 (121)
T ss_dssp TTEEEEEEETTTSEEEEEEEEEE--ECTTEEEEEETTTTEEEEEEGGGEEE-
T ss_pred cCCEEEEEEecCCceeeEEEEEe--cccceeEEEEEecCceEEEcHHHhhhh
Confidence 33455666677899999999333 368999999999999999999999864
No 53
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=55.97 E-value=51 Score=30.06 Aligned_cols=39 Identities=15% Similarity=0.090 Sum_probs=32.6
Q ss_pred CCCcCCCCEEEEeeCC---CeeEEEEEEEecCCCCeEEEEECCcc
Q 044464 479 DLSLGIGTAVDAWWSD---GWWEGVVIGVDSSSTDNLQVYLSGES 520 (686)
Q Consensus 479 ~~~~~vGD~VDAw~~D---GWWeGVV~kv~~~g~~ky~VyFpGe~ 520 (686)
...|++|..+||-..- -+|.+.|+++. +.++.|.|.|-.
T Consensus 25 ~~~F~vGmkLEavD~~~~~~i~vAtV~~v~---g~~l~v~~dg~~ 66 (96)
T smart00561 25 PNGFKVGMKLEAVDPRNPSLICVATVVEVK---GYRLLLHFDGWD 66 (96)
T ss_pred cCcccCCCEEEEECCCCCceEEEEEEEEEE---CCEEEEEEccCC
Confidence 4669999999997665 58999999996 569999999854
No 54
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=53.28 E-value=21 Score=33.09 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=32.8
Q ss_pred CcCCCCEEEEeeCC-CeeEEEEEEEe-----------cCCCCeEEEEECCcc-eEEEeecCCCc
Q 044464 481 SLGIGTAVDAWWSD-GWWEGVVIGVD-----------SSSTDNLQVYLSGES-LFLNVNKNDLR 531 (686)
Q Consensus 481 ~~~vGD~VDAw~~D-GWWeGVV~kv~-----------~~g~~ky~VyFpGe~-del~f~~sdLR 531 (686)
.|.+||.|=|=..+ -||.|.|+... ......|.|.|-|.. +..=+..++|.
T Consensus 2 ~~~~GdlVWaK~~g~PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~~aWv~~~~l~ 65 (110)
T cd05837 2 KYQVGDLVWAKVSGYPWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDNPERAWISEKSLK 65 (110)
T ss_pred CCCCCCEEEEeCCCCCCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCCCCEEEecHHHcc
Confidence 58899999886555 99999999521 123467888777653 43333333333
No 55
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=50.32 E-value=13 Score=45.82 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=35.2
Q ss_pred CCCCCCEEEEEecCCcceeeEEEEEEEEeeC-CeEEEEeCcccCCCCCCcceEEEecc
Q 044464 395 MYKVNAKIELLCQDSGIRGCWFRCIVLQVSQ-KQMKVRYDDVQDEDGSGNLEEWIPVY 451 (686)
Q Consensus 395 ~FkvG~~VEV~S~EeGfrGsWF~AtVIk~~~-~ky~VeY~dL~deDgs~~L~EwV~~s 451 (686)
..+.|+.+=-.. +.-|.||||+|+.+.+ ..+.|.|.|+-+ +|.++..
T Consensus 695 ~p~~gd~c~A~y---~~D~qwyRa~i~~V~~~~~~~V~yiDygn-------~E~lp~~ 742 (875)
T KOG2039|consen 695 TPKRGDLCVAKY---SLDGQWYRALIVEVLDPESMEVFYIDYGN-------IETLPFV 742 (875)
T ss_pred CCCCCCeeeeee---ccccceeeeeeeeeccCcceeEEEEecCc-------ccccccc
Confidence 456677665443 2468999999999877 999999999865 4667754
No 56
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=47.16 E-value=58 Score=31.28 Aligned_cols=45 Identities=22% Similarity=0.445 Sum_probs=31.6
Q ss_pred cccCCCCCCEEEEEecCCcceeeEEEEEEEEe---eCCeEEEEeCcccCCC
Q 044464 392 YSAMYKVNAKIELLCQDSGIRGCWFRCIVLQV---SQKQMKVRYDDVQDED 439 (686)
Q Consensus 392 ~~~~FkvG~~VEV~S~EeGfrGsWF~AtVIk~---~~~ky~VeY~dL~deD 439 (686)
....|.+|+.|=.+=-+ .-|.|+|+|++. ..+.|+|++++=.+.+
T Consensus 68 ~~~~f~~g~~VLAlYP~---TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~ 115 (130)
T PF07039_consen 68 PLAEFPKGTKVLALYPD---TTCFYPATVVSPPKKKSGEYKLKFEDDEDAD 115 (130)
T ss_dssp GGGS--TT-EEEEE-TT---SSEEEEEEEEEE-SSTTS-EEEEECTTTSTT
T ss_pred chhhCCCCCEEEEECCC---CceEEEEEEEeCCCCCCCcEEEEEeCCCCcC
Confidence 46789999999999444 579999999997 3578999999854433
No 57
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=46.80 E-value=34 Score=32.52 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=31.9
Q ss_pred ccCCCCCCEEEEEecCCcceeeEEEEEEEE------eeCCeEEEEeCc
Q 044464 393 SAMYKVNAKIELLCQDSGIRGCWFRCIVLQ------VSQKQMKVRYDD 434 (686)
Q Consensus 393 ~~~FkvG~~VEV~S~EeGfrGsWF~AtVIk------~~~~ky~VeY~d 434 (686)
...+++||.|=+.....+.+ |.||+|+. ..++.|.|+|-|
T Consensus 53 ~~~L~~GD~VLA~~~~~~~~--Y~Pg~V~~~~~~~~~~~~~~~V~f~n 98 (124)
T PF15057_consen 53 RHSLQVGDKVLAPWEPDDCR--YGPGTVIAGPERRASEDKEYTVRFYN 98 (124)
T ss_pred cCcCCCCCEEEEecCcCCCE--EeCEEEEECccccccCCceEEEEEEC
Confidence 46889999999996655555 99999995 346789999776
No 58
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=44.88 E-value=24 Score=28.18 Aligned_cols=23 Identities=35% Similarity=0.787 Sum_probs=18.6
Q ss_pred CCCcCCCCEEEEe---eCCCeeEEEE
Q 044464 479 DLSLGIGTAVDAW---WSDGWWEGVV 501 (686)
Q Consensus 479 ~~~~~vGD~VDAw---~~DGWWeGVV 501 (686)
.-.|+.||.|.+. ..++||.|..
T Consensus 15 ~Ls~~~Gd~i~v~~~~~~~~ww~~~~ 40 (55)
T PF07653_consen 15 ELSFKKGDVIEVLGEKDDDGWWLGEN 40 (55)
T ss_dssp B-EB-TTEEEEEEEEECSTSEEEEEE
T ss_pred ceEEecCCEEEEEEeecCCCEEEEEE
Confidence 3679999999998 6789999988
No 59
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=42.94 E-value=41 Score=30.48 Aligned_cols=55 Identities=15% Similarity=0.232 Sum_probs=41.2
Q ss_pred CCCCEEEEeeCC-CeeEEEEEEEec---------CCCCeEEEEECCcceEEEeecCCCcceeeec
Q 044464 483 GIGTAVDAWWSD-GWWEGVVIGVDS---------SSTDNLQVYLSGESLFLNVNKNDLRISRDWA 537 (686)
Q Consensus 483 ~vGD~VDAw~~D-GWWeGVV~kv~~---------~g~~ky~VyFpGe~del~f~~sdLRpsldW~ 537 (686)
.+||.|=|=..+ -||.|+|+.-.. ...+.|.|+|-|+.+..-+..++|-|-.+..
T Consensus 2 ~~GdlVWaK~~g~pwWPa~V~~~~~~p~~~~~~~~~~~~~~V~Ffgs~~y~Wv~~~~l~pf~e~~ 66 (95)
T cd05838 2 LYGDIVWAKLGNFRWWPAIICDPREVPPNIQVLRHCIGEFCVMFFGTHDYYWVHRGRVFPYQEGD 66 (95)
T ss_pred CcCCEEEEECCCCCCCCeEEcChhhcChhHhhccCCCCeEEEEEeCCCCEEEeccccccchhhhh
Confidence 478888886655 899999987321 1245799999999888888887777766554
No 60
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=42.25 E-value=42 Score=31.25 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=39.3
Q ss_pred CCcCCCCEEEEeeCCCe-----------eEEEEEEEecCCCCeEEE--EECCcceEEEeecCCCccee
Q 044464 480 LSLGIGTAVDAWWSDGW-----------WEGVVIGVDSSSTDNLQV--YLSGESLFLNVNKNDLRISR 534 (686)
Q Consensus 480 ~~~~vGD~VDAw~~DGW-----------WeGVV~kv~~~g~~ky~V--yFpGe~del~f~~sdLRpsl 534 (686)
..|++||.|+.-.+.+- .+|+|..+. +..|.| +.-+-.+.+.+.+.+|||..
T Consensus 31 ~ey~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~---g~ay~V~v~~G~k~K~liv~peHLk~~~ 95 (98)
T COG2139 31 QEYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVR---GRAYKVEVYDGNKEKTLIVRPEHLKPQK 95 (98)
T ss_pred hhccCCCEEEEEeCcccccCCCCccccCcceEEEecc---CCEEEEEEecCCceEEEEeCHHHccccc
Confidence 68999999999877654 589999974 455555 54456667888899999864
No 61
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=39.90 E-value=33 Score=27.21 Aligned_cols=24 Identities=33% Similarity=0.767 Sum_probs=18.0
Q ss_pred CCCCcCCCCEEEEee--CCCeeEEEE
Q 044464 478 EDLSLGIGTAVDAWW--SDGWWEGVV 501 (686)
Q Consensus 478 ~~~~~~vGD~VDAw~--~DGWWeGVV 501 (686)
..-.|+.||.|-+.. +++||.|..
T Consensus 11 dELs~~~Gd~i~v~~~~~~~W~~g~~ 36 (49)
T PF14604_consen 11 DELSFKKGDVITVLEKSDDGWWYGRN 36 (49)
T ss_dssp TB-EB-TTEEEEEEEESSTSEEEEEE
T ss_pred CEeeEcCCCEEEEEEeCCCCEEEEEE
Confidence 456799999999875 589999974
No 62
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=35.57 E-value=69 Score=24.06 Aligned_cols=25 Identities=32% Similarity=0.715 Sum_probs=20.0
Q ss_pred CCCcCCCCEEEEeeC--CCeeEEEEEE
Q 044464 479 DLSLGIGTAVDAWWS--DGWWEGVVIG 503 (686)
Q Consensus 479 ~~~~~vGD~VDAw~~--DGWWeGVV~k 503 (686)
...+..||.|.+... ++||.|....
T Consensus 18 ~l~~~~Gd~v~v~~~~~~~w~~~~~~~ 44 (58)
T smart00326 18 ELSFKKGDIITVLEKSDDGWWKGRLGR 44 (58)
T ss_pred CCCCCCCCEEEEEEcCCCCeEEEEeCC
Confidence 456889999999865 7999997653
No 63
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=35.47 E-value=46 Score=41.02 Aligned_cols=40 Identities=23% Similarity=0.628 Sum_probs=31.2
Q ss_pred CCcCCCCEEEEeeCCC------eeEEEEEEEecC-------CCCeEEEEECCc
Q 044464 480 LSLGIGTAVDAWWSDG------WWEGVVIGVDSS-------STDNLQVYLSGE 519 (686)
Q Consensus 480 ~~~~vGD~VDAw~~DG------WWeGVV~kv~~~-------g~~ky~VyFpGe 519 (686)
..|..+|.--+||.|. ||+|.|..+... .=.+|.|....+
T Consensus 977 rnW~~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~ 1029 (1113)
T KOG0644|consen 977 RNWTCRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNT 1029 (1113)
T ss_pred hccccccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCC
Confidence 5899999999999998 999999998531 123677776643
No 64
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=33.79 E-value=74 Score=23.66 Aligned_cols=26 Identities=38% Similarity=0.983 Sum_probs=20.3
Q ss_pred CCCCcCCCCEEEEee--CCCeeEEEEEE
Q 044464 478 EDLSLGIGTAVDAWW--SDGWWEGVVIG 503 (686)
Q Consensus 478 ~~~~~~vGD~VDAw~--~DGWWeGVV~k 503 (686)
....+..||.|.+.- +++||.|....
T Consensus 14 ~~l~~~~Gd~v~v~~~~~~~w~~~~~~~ 41 (54)
T cd00174 14 DELSFKKGDIIEVLEKSDDGWWEGRLLG 41 (54)
T ss_pred CCCCCCCCCEEEEEEcCCCCeEEEEECC
Confidence 346788999999986 58999987543
No 65
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=33.75 E-value=88 Score=28.52 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=32.9
Q ss_pred EEEee--CCCeeEEEEEEEecC-----CCCeEEEEECC--cceEEEeecCCCcce
Q 044464 488 VDAWW--SDGWWEGVVIGVDSS-----STDNLQVYLSG--ESLFLNVNKNDLRIS 533 (686)
Q Consensus 488 VDAw~--~DGWWeGVV~kv~~~-----g~~ky~VyFpG--e~del~f~~sdLRps 533 (686)
|||-. .|+|-++.|+.+... .+--|.|.|.+ +.....+..+++||+
T Consensus 2 vD~~d~~~gAWfEa~i~~i~~~~~~~~e~viYhIkyddype~gvv~~~~~~iRpR 56 (85)
T PF12148_consen 2 VDARDRNMGAWFEAQIVTITKKCMSDDEDVIYHIKYDDYPENGVVEMRSKDIRPR 56 (85)
T ss_dssp EEEE-TTT-EEEEEEEEEEEES-SSSSTTEEEEEEETT-GGG-EEEEEGGGEEE-
T ss_pred cccccCCCcceEEEEEEEeeccCCCCCCCEEEEEEeccCCCcCceecccccccce
Confidence 77763 568999999998742 23479999974 566678889999986
No 66
>PRK04306 50S ribosomal protein L21e; Reviewed
Probab=32.55 E-value=80 Score=29.40 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=39.9
Q ss_pred CCcCCCCEEEEeeCCCee-----------EEEEEEEecCCCCeEEEEECCcceEEEeecCCCccee
Q 044464 480 LSLGIGTAVDAWWSDGWW-----------EGVVIGVDSSSTDNLQVYLSGESLFLNVNKNDLRISR 534 (686)
Q Consensus 480 ~~~~vGD~VDAw~~DGWW-----------eGVV~kv~~~g~~ky~VyFpGe~del~f~~sdLRpsl 534 (686)
..|++||.||.--+.+.. +|+|..+.. ..--+.|..-+-.+.+.+...+||++.
T Consensus 33 ~~y~~Gd~V~I~~d~sv~kGmPh~~yhGkTG~V~~v~~-~A~~V~v~vg~k~Kri~vr~eHlk~~~ 97 (98)
T PRK04306 33 QEFEEGDKVHIVIDPSVHKGMPHPRFHGKTGTVVGKRG-RAYIVEVKDGGKEKTLIVRPEHLRPQK 97 (98)
T ss_pred HhccCCCEEEEEecCceecCCccccccCCCEEEEeecC-eEEEEEEEECCceeEEEcCHHHcCccC
Confidence 579999999999999995 689999841 122344455566677888888888763
No 67
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=31.73 E-value=2.8e+02 Score=35.11 Aligned_cols=104 Identities=18% Similarity=0.309 Sum_probs=67.5
Q ss_pred ccCCCCCCEEEEEecCCcceeeEEEEEEEEeeCCeEEEEeCcccCCCCCCcceEEEecccccCCCccCCCCCCCCCcCCC
Q 044464 393 SAMYKVNAKIELLCQDSGIRGCWFRCIVLQVSQKQMKVRYDDVQDEDGSGNLEEWIPVYKVAKPDKLGMRCSDRPTIRPT 472 (686)
Q Consensus 393 ~~~FkvG~~VEV~S~EeGfrGsWF~AtVIk~~~~ky~VeY~dL~deDgs~~L~EwV~~sr~a~pd~~g~R~~~R~~IRP~ 472 (686)
...|.+|+.|||.--|. .| +.++|.++.+..+.+.=.. ++-.+||. |+++ -+
T Consensus 405 ~~~F~~GD~VeV~~Gel--~g--lkG~ve~vdg~~vti~~~~---e~l~~pl~--~~~~----------------eL--- 456 (1024)
T KOG1999|consen 405 KHLFSPGDAVEVIVGEL--KG--LKGKVESVDGTIVTIMSKH---EDLKGPLE--VPAS----------------EL--- 456 (1024)
T ss_pred ccccCCCCeEEEeeeee--cc--ceeEEEeccCceEEEeecc---ccCCCccc--cchH----------------hh---
Confidence 45699999999997553 33 6778888888777776432 11112322 2211 11
Q ss_pred CCCCCCCCCcCCCCEEEEe---eCCCeeEEEEEEEecCCCCeEEEEECCcceEEEeecCCCcceee
Q 044464 473 PPDNREDLSLGIGTAVDAW---WSDGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKNDLRISRD 535 (686)
Q Consensus 473 PP~~~~~~~~~vGD~VDAw---~~DGWWeGVV~kv~~~g~~ky~VyFpGe~del~f~~sdLRpsld 535 (686)
..-|++||.|=|- |.|. +|.|++|. ...+.|+=..+.+++.+-+.+|-.+-+
T Consensus 457 ------rKyF~~GDhVKVi~G~~eG~--tGlVvrVe---~~~vi~~Sd~t~eel~Vf~~dlq~c~e 511 (1024)
T KOG1999|consen 457 ------RKYFEPGDHVKVIAGRYEGD--TGLVVRVE---QGDVILLSDLTMEELKVFARDLQLCSE 511 (1024)
T ss_pred ------hhhccCCCeEEEEeccccCC--cceEEEEe---CCeEEEEecCccceeeEEehhcccchh
Confidence 2448899998874 3443 79999995 556666666778888888888874433
No 68
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [].; PDB: 2YRV_A.
Probab=31.09 E-value=80 Score=29.38 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=19.8
Q ss_pred CCCEEEEEecCCcceeeEEEEEEEEee--------CCeEEEE
Q 044464 398 VNAKIELLCQDSGIRGCWFRCIVLQVS--------QKQMKVR 431 (686)
Q Consensus 398 vG~~VEV~S~EeGfrGsWF~AtVIk~~--------~~ky~Ve 431 (686)
.|-.|=|-+... +++||||-|++-+ ++.|+|+
T Consensus 8 lGkVV~V~~~~~--k~~W~PALVVsPsc~ddv~VkKD~~lVR 47 (96)
T PF08169_consen 8 LGKVVCVESTKK--KTSWFPALVVSPSCNDDVTVKKDQCLVR 47 (96)
T ss_dssp TTSEEEEE-SS---SS-EEEEEEE--SS-SS----TT-EEEE
T ss_pred cCcEEEEEcCCC--CCceeeEEEEcCCccceeeeccceEEEE
Confidence 788888855444 8999999999732 3556666
No 69
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=28.62 E-value=15 Score=42.04 Aligned_cols=44 Identities=25% Similarity=0.402 Sum_probs=31.7
Q ss_pred CCcCCCCEEEEe--eCCCeeEEEEEEEecCCCCeEEEEECCcceEE
Q 044464 480 LSLGIGTAVDAW--WSDGWWEGVVIGVDSSSTDNLQVYLSGESLFL 523 (686)
Q Consensus 480 ~~~~vGD~VDAw--~~DGWWeGVV~kv~~~g~~ky~VyFpGe~del 523 (686)
-.|+|||.+|+- ..+|||+|+.-....+....|.-.++++.++.
T Consensus 117 LelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~~sde~ 162 (627)
T KOG4348|consen 117 LELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPTPSDES 162 (627)
T ss_pred eeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCCCCcch
Confidence 478999999985 46899999997755444455655666666543
No 70
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=27.93 E-value=43 Score=40.81 Aligned_cols=24 Identities=38% Similarity=0.844 Sum_probs=20.4
Q ss_pred CCcCCCCEEEEeeCC--CeeEEEEEE
Q 044464 480 LSLGIGTAVDAWWSD--GWWEGVVIG 503 (686)
Q Consensus 480 ~~~~vGD~VDAw~~D--GWWeGVV~k 503 (686)
-.|+.||.++.-.++ |||.|.+-.
T Consensus 1068 ls~~~~diIei~~edpSGWw~gk~~~ 1093 (1106)
T KOG0162|consen 1068 LSFKKGDIIEIMREDPSGWWLGKLNG 1093 (1106)
T ss_pred ccccCCCEEEEeccCCCcchhhccCC
Confidence 478999999999887 999998443
No 71
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=26.79 E-value=1.9e+02 Score=28.15 Aligned_cols=89 Identities=24% Similarity=0.307 Sum_probs=0.0
Q ss_pred EEEEEEEE-eeCCeEEEEeCcccCCCCCCcceEEEecccccCCCccCCCCCCCCCcCCCCCCCCCCCCcCCCCEEEEeeC
Q 044464 415 WFRCIVLQ-VSQKQMKVRYDDVQDEDGSGNLEEWIPVYKVAKPDKLGMRCSDRPTIRPTPPDNREDLSLGIGTAVDAWWS 493 (686)
Q Consensus 415 WF~AtVIk-~~~~ky~VeY~dL~deDgs~~L~EwV~~sr~a~pd~~g~R~~~R~~IRP~PP~~~~~~~~~vGD~VDAw~~ 493 (686)
+|+++|.. ..+.+|+|.++| ...+.-|-+-+-+. ..+.+|+.|=|-.+
T Consensus 19 yY~G~I~~~~~~~kykv~FdD---G~~~~v~~~div~~----------------------------dplpl~~eV~A~~e 67 (122)
T PF09038_consen 19 YYPGKITSDKGKNKYKVLFDD---GYECRVLGKDIVVC----------------------------DPLPLGTEVTALSE 67 (122)
T ss_dssp EEEEEEEEEETTTEEEEEETT---S-EEEEECCCEEEE----------------------------SSS-TTEEEEECCT
T ss_pred ccCceEeecCCCCeEEEEecC---CccceeccCcEEEE----------------------------cceeccceeEEeec
Q ss_pred CCeeE-EEEEEEecCCCCeEEEEECCcceEEEeecCCCcceee
Q 044464 494 DGWWE-GVVIGVDSSSTDNLQVYLSGESLFLNVNKNDLRISRD 535 (686)
Q Consensus 494 DGWWe-GVV~kv~~~g~~ky~VyFpGe~del~f~~sdLRpsld 535 (686)
|.+|. |+|..+...+++.|-+ ..-.+....+.++++=.|.+
T Consensus 68 ddY~~~GvV~~h~~~~~e~yY~-Ve~dG~~~~~~r~~viLs~~ 109 (122)
T PF09038_consen 68 DDYFSPGVVKGHKTDSGEVYYC-VETDGQRKRYQRKDVILSAD 109 (122)
T ss_dssp TCTSEEEEEEEEEEETTEEEEE-EEETTEEEEEEGGGEEEEHH
T ss_pred CCcccccEEEEEEccCCcEEEE-EEECCCEEEEEeeeEEEcHH
No 72
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=25.64 E-value=1.8e+02 Score=25.50 Aligned_cols=38 Identities=18% Similarity=0.096 Sum_probs=31.9
Q ss_pred EEEEEEEecCCCCeEEEEECCcceEEEeecCCCcceeeec
Q 044464 498 EGVVIGVDSSSTDNLQVYLSGESLFLNVNKNDLRISRDWA 537 (686)
Q Consensus 498 eGVV~kv~~~g~~ky~VyFpGe~del~f~~sdLRpsldW~ 537 (686)
+|+|++.+ ++..|.|.+.+....+-.-+-.+|.+.-|+
T Consensus 8 ~G~V~e~L--~~~~f~V~l~ng~~vla~i~GKmr~~rI~I 45 (68)
T TIGR00008 8 EGKVTESL--PNAMFRVELENGHEVLAHISGKIRMHYIRI 45 (68)
T ss_pred EEEEEEEC--CCCEEEEEECCCCEEEEEecCcchhccEEE
Confidence 69999985 799999999987777777788888887776
No 73
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=25.03 E-value=1.6e+02 Score=25.04 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=32.2
Q ss_pred CCCCCEEEEEecCCcceeeEEEEEEEEee--------CCeEEEEeCcccCCCCCCcceEEEecc
Q 044464 396 YKVNAKIELLCQDSGIRGCWFRCIVLQVS--------QKQMKVRYDDVQDEDGSGNLEEWIPVY 451 (686)
Q Consensus 396 FkvG~~VEV~S~EeGfrGsWF~AtVIk~~--------~~ky~VeY~dL~deDgs~~L~EwV~~s 451 (686)
|++|+.|=++- .|| .|.||.|+... ...+.|+|-.--+ ..||+.+
T Consensus 1 f~~GdlVWaK~--~g~--pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~~-------~~wv~~~ 53 (86)
T PF00855_consen 1 FRPGDLVWAKL--KGY--PWWPARVCDPDEKSKKKRKDGHVLVRFFGDND-------YAWVKPS 53 (86)
T ss_dssp -STTEEEEEEE--TTS--EEEEEEEEECCHCTSCSSSSTEEEEEETTTTE-------EEEEEGG
T ss_pred CCCCCEEEEEe--CCC--CCCceEEeecccccccCCCCCEEEEEecCCCC-------EEEECHH
Confidence 78999999976 555 59999999863 3679999776211 4677754
No 74
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=24.40 E-value=2.4e+02 Score=21.88 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=26.7
Q ss_pred CCCeeEEEEEEEecCCCCeEEEEECCcceEEEeecC
Q 044464 493 SDGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKN 528 (686)
Q Consensus 493 ~DGWWeGVV~kv~~~g~~ky~VyFpGe~del~f~~s 528 (686)
+.||=.|.|++.. ++.++|.... +.++++...
T Consensus 10 ~egfv~g~I~~~~---g~~vtV~~~~-G~~~tv~~d 41 (42)
T PF02736_consen 10 KEGFVKGEIIEEE---GDKVTVKTED-GKEVTVKKD 41 (42)
T ss_dssp SSSEEEEEEEEEE---SSEEEEEETT-TEEEEEEGG
T ss_pred cccEEEEEEEEEc---CCEEEEEECC-CCEEEeCCC
Confidence 4699999999874 7899999998 888888764
No 75
>PF11160 DUF2945: Protein of unknown function (DUF2945); InterPro: IPR021331 This family of proteins has no known function.
Probab=24.13 E-value=2.6e+02 Score=24.02 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=19.9
Q ss_pred CCEEEEeeCCCeeEEEEEEEe
Q 044464 485 GTAVDAWWSDGWWEGVVIGVD 505 (686)
Q Consensus 485 GD~VDAw~~DGWWeGVV~kv~ 505 (686)
||.|.|-+..|+=.|+|+++.
T Consensus 1 GD~V~W~s~~g~~~G~V~~~~ 21 (62)
T PF11160_consen 1 GDKVRWNSGQGTTTGTVVEVH 21 (62)
T ss_pred CCEEEEcCCCCeEEEEEEEEE
Confidence 899999999999999999986
No 76
>PF12945 YcgR_2: Flagellar protein YcgR; PDB: 2RDE_B 1YLN_A 3KYG_A.
Probab=22.93 E-value=2.5e+02 Score=23.72 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=23.1
Q ss_pred CCCCCEEEEEecCCcceeeEEEEEEEEeeCC-eEEEEeC
Q 044464 396 YKVNAKIELLCQDSGIRGCWFRCIVLQVSQK-QMKVRYD 433 (686)
Q Consensus 396 FkvG~~VEV~S~EeGfrGsWF~AtVIk~~~~-ky~VeY~ 433 (686)
+++|++|++.-...+-.-..|+++|+....+ .+.|.+-
T Consensus 1 L~iG~~i~i~i~~~~~~~~~y~S~v~g~~~~~~l~i~~P 39 (87)
T PF12945_consen 1 LKIGQKIEIEITNPTGEKGRYKSRVIGIDDDRYLIISMP 39 (87)
T ss_dssp --TT-EEEEEEE-TTS-EEEEEEEEEEEETTTEEEEE--
T ss_pred CCCCCEEEEEEECCCCceEEEEEEEEEECCCCEEEEEcC
Confidence 4689999997643332337899999998766 5666643
No 77
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=22.80 E-value=2.2e+02 Score=24.26 Aligned_cols=30 Identities=23% Similarity=0.541 Sum_probs=22.9
Q ss_pred cCCCCEEEEeeCCCeeEEEEEEEecCCCCeEEEEEC
Q 044464 482 LGIGTAVDAWWSDGWWEGVVIGVDSSSTDNLQVYLS 517 (686)
Q Consensus 482 ~~vGD~VDAw~~DGWWeGVV~kv~~~g~~ky~VyFp 517 (686)
-++||.++ | .+| ++|+|.++. ++.+-|-+.
T Consensus 4 a~vGdiIe-f-k~g-~~G~V~kv~---eNSVIVdIT 33 (57)
T PF09953_consen 4 AKVGDIIE-F-KDG-FTGIVEKVY---ENSVIVDIT 33 (57)
T ss_pred cccCcEEE-E-cCC-cEEEEEEEe---cCcEEEEEE
Confidence 36899999 4 456 799999996 667777663
No 78
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=22.60 E-value=1.3e+02 Score=22.46 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=21.2
Q ss_pred ccCCCCCCEEEEEecCCcceeeEEEEEEE
Q 044464 393 SAMYKVNAKIELLCQDSGIRGCWFRCIVL 421 (686)
Q Consensus 393 ~~~FkvG~~VEV~S~EeGfrGsWF~AtVI 421 (686)
.+.|++|+.|+|.... .+.|+.++..
T Consensus 18 ~l~~~~Gd~v~v~~~~---~~~w~~~~~~ 43 (58)
T smart00326 18 ELSFKKGDIITVLEKS---DDGWWKGRLG 43 (58)
T ss_pred CCCCCCCCEEEEEEcC---CCCeEEEEeC
Confidence 5789999999999876 5688888754
No 79
>PHA02769 hypothetical protein; Provisional
Probab=22.56 E-value=43 Score=32.32 Aligned_cols=66 Identities=24% Similarity=0.465 Sum_probs=45.5
Q ss_pred CCceeEeeehhhhcccCCCeeEEEEeeeccceeeee-ecCCCCCCceEEEcCCceeeeeeeeeccccccChHHHHHHHhh
Q 044464 183 GENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGV-VSLRNPHPKEVFITPHSQVISAECVDGSASVLTREHFSKCLAA 261 (686)
Q Consensus 183 e~~~~vAYlEDmYED~kg~k~V~VRWFh~~~Ev~~~-lp~~~~~~rEvf~s~~~Q~isvECiDG~AtVLtp~H~ek~~~~ 261 (686)
...+|.||||- ||.+|- -|-|-|.|.+.-+..+ +-..-|+||-.||-- +..|-.-+|.-.||+-
T Consensus 39 ~~~~y~~ylek--ed~~~y-~~avawlhd~~pfr~ia~~~~ip~drs~firr------------itk~apgd~lvnfl~~ 103 (154)
T PHA02769 39 RNSRYFIYLEK--EDDKEY-IVAVAWLHDNTPFRFIAQQYNIPNDRSYFIRR------------ITKTAPGDHLVNFLND 103 (154)
T ss_pred cceEEEEEeec--cCCcce-EEEEEeeccCCchhhHHHHhCCCcchHHHHHH------------HhccCChHHHHHHHHH
Confidence 46789999995 777775 5788999998766433 333345899888643 3445556777777776
Q ss_pred cc
Q 044464 262 FP 263 (686)
Q Consensus 262 ~~ 263 (686)
+.
T Consensus 104 l~ 105 (154)
T PHA02769 104 LA 105 (154)
T ss_pred HH
Confidence 43
No 80
>PF02410 Oligomerisation: Oligomerisation domain; InterPro: IPR004394 The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids, but the plastid-encoded one, similar to bacterial RNA polymerases, is missing in iojap mutants. The role of iojap in chloroplast development, and the role of its bacterial orthologs modeled here, is unclear [, ]. This entry contains the bacterial protein YbeB (P0AAT6 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2O5A_A 2ID1_B 3UPS_A.
Probab=20.89 E-value=63 Score=29.30 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=29.3
Q ss_pred cCCCCceEEEEEEecCCCCeeEEEeeeeccccee
Q 044464 17 SQERGNRVVHYFLKDSAGESVLAVVGTERSVRHM 50 (686)
Q Consensus 17 s~drG~R~VhYyLk~~~G~~~LAVvGters~rhm 50 (686)
...+|..++.|=|+...+-.+..||+|-+|.|||
T Consensus 10 ~~~k~~dI~v~dv~~~~~~~dy~II~T~~S~rh~ 43 (100)
T PF02410_consen 10 EDKKAEDIVVLDVREKSSWADYFIIATGRSERHV 43 (100)
T ss_dssp HHTT-EEEEEEEGCTTBSS-SEEEEEEESSHHHH
T ss_pred HHcCCCCeEEEECCCCCcccCEEEEEEcCCHHHH
Confidence 4568999999999999999999999999999996
Done!