Query 044468
Match_columns 396
No_of_seqs 178 out of 2629
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 03:31:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 7.8E-24 1.7E-28 222.0 18.3 323 10-369 89-435 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.1E-23 2.4E-28 220.8 19.1 322 10-370 114-460 (968)
3 KOG4194 Membrane glycoprotein 99.9 4.8E-25 1E-29 201.8 4.1 311 10-360 98-438 (873)
4 KOG4194 Membrane glycoprotein 99.9 1.2E-24 2.6E-29 199.3 2.3 299 4-344 114-446 (873)
5 PLN03210 Resistant to P. syrin 99.9 3.6E-22 7.9E-27 210.3 20.4 306 15-355 590-911 (1153)
6 KOG0444 Cytoskeletal regulator 99.9 2.9E-25 6.4E-30 204.9 -6.0 330 3-370 43-394 (1255)
7 KOG4658 Apoptotic ATPase [Sign 99.9 5.7E-23 1.2E-27 206.5 9.2 366 2-388 511-883 (889)
8 KOG0444 Cytoskeletal regulator 99.9 1.1E-24 2.4E-29 201.2 -3.0 275 9-328 98-377 (1255)
9 PLN03210 Resistant to P. syrin 99.8 2.9E-20 6.4E-25 195.9 19.2 310 4-352 601-945 (1153)
10 KOG0472 Leucine-rich repeat pr 99.7 1.2E-19 2.6E-24 159.9 -3.5 306 12-348 181-539 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 1.4E-19 3.1E-24 159.3 -8.8 251 16-287 47-308 (565)
12 KOG0618 Serine/threonine phosp 99.7 2.2E-18 4.7E-23 166.3 -4.9 104 252-374 381-488 (1081)
13 KOG0617 Ras suppressor protein 99.7 2.6E-18 5.7E-23 134.6 -3.7 163 5-185 24-189 (264)
14 KOG0618 Serine/threonine phosp 99.6 1.1E-17 2.3E-22 161.7 -3.8 295 12-344 197-504 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 1E-14 2.2E-19 144.4 14.4 255 15-348 202-456 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 3.7E-14 8E-19 140.5 12.9 245 3-324 212-456 (788)
17 PRK15370 E3 ubiquitin-protein 99.5 5.2E-14 1.1E-18 140.2 9.8 248 15-324 179-426 (754)
18 PRK15370 E3 ubiquitin-protein 99.5 1.1E-13 2.3E-18 137.9 9.8 232 3-287 189-426 (754)
19 KOG4237 Extracellular matrix p 99.5 1.3E-15 2.8E-20 134.3 -3.8 270 1-285 55-355 (498)
20 KOG4658 Apoptotic ATPase [Sign 99.5 5.4E-14 1.2E-18 142.2 6.7 309 10-358 541-868 (889)
21 cd00116 LRR_RI Leucine-rich re 99.5 1E-14 2.2E-19 133.9 1.0 137 33-181 20-177 (319)
22 KOG0617 Ras suppressor protein 99.5 1.2E-15 2.5E-20 119.9 -4.4 135 8-146 50-187 (264)
23 cd00116 LRR_RI Leucine-rich re 99.4 2.7E-14 5.9E-19 131.1 2.8 187 10-207 19-231 (319)
24 KOG4237 Extracellular matrix p 99.3 4.3E-14 9.4E-19 124.9 -5.6 247 3-264 78-356 (498)
25 PF14580 LRR_9: Leucine-rich r 99.2 5.6E-12 1.2E-16 103.0 4.6 131 5-138 10-146 (175)
26 KOG4341 F-box protein containi 99.2 3.2E-13 7E-18 120.3 -4.0 296 36-359 138-448 (483)
27 KOG4341 F-box protein containi 99.1 1.7E-12 3.7E-17 115.7 -4.3 266 56-352 133-416 (483)
28 PF14580 LRR_9: Leucine-rich r 99.1 1.3E-10 2.8E-15 95.0 6.7 140 24-177 7-148 (175)
29 KOG3207 Beta-tubulin folding c 99.1 1.5E-11 3.1E-16 110.5 -0.3 219 3-235 109-339 (505)
30 KOG3207 Beta-tubulin folding c 99.1 3.4E-11 7.3E-16 108.2 1.2 212 56-286 117-336 (505)
31 KOG1909 Ran GTPase-activating 99.0 1.1E-10 2.4E-15 102.1 1.2 97 130-235 155-254 (382)
32 KOG0532 Leucine-rich repeat (L 98.9 6.6E-11 1.4E-15 109.7 -3.2 191 18-235 54-247 (722)
33 COG4886 Leucine-rich repeat (L 98.8 4.7E-09 1E-13 99.3 4.4 192 18-235 97-290 (394)
34 KOG2120 SCF ubiquitin ligase, 98.8 3.6E-10 7.8E-15 96.9 -2.9 184 108-325 186-375 (419)
35 KOG1259 Nischarin, modulator o 98.8 9.4E-10 2E-14 94.5 -0.6 128 37-182 285-412 (490)
36 KOG0532 Leucine-rich repeat (L 98.8 9.8E-10 2.1E-14 102.1 -0.5 134 9-147 116-249 (722)
37 COG4886 Leucine-rich repeat (L 98.7 1.1E-08 2.4E-13 96.8 5.5 193 40-269 97-292 (394)
38 KOG1259 Nischarin, modulator o 98.7 1.3E-09 2.7E-14 93.8 -1.1 133 10-147 280-414 (490)
39 KOG2120 SCF ubiquitin ligase, 98.6 6.3E-10 1.4E-14 95.4 -5.4 183 84-288 185-375 (419)
40 KOG1909 Ran GTPase-activating 98.6 1.2E-08 2.6E-13 89.6 0.4 214 10-234 54-310 (382)
41 PF13855 LRR_8: Leucine rich r 98.6 5.6E-08 1.2E-12 65.3 3.6 57 37-94 2-59 (61)
42 PLN03150 hypothetical protein; 98.5 3.4E-07 7.3E-12 91.2 9.0 103 38-142 420-525 (623)
43 PF13855 LRR_8: Leucine rich r 98.5 1.4E-07 3E-12 63.4 4.0 57 14-70 1-59 (61)
44 PLN03150 hypothetical protein; 98.4 6.6E-07 1.4E-11 89.1 9.0 109 15-124 419-532 (623)
45 KOG0531 Protein phosphatase 1, 98.4 4.3E-08 9.4E-13 93.1 -0.7 216 35-287 71-288 (414)
46 KOG1859 Leucine-rich repeat pr 98.3 9E-09 1.9E-13 98.4 -6.9 184 3-208 98-290 (1096)
47 KOG1859 Leucine-rich repeat pr 98.3 1.2E-08 2.6E-13 97.6 -6.6 129 13-147 163-294 (1096)
48 COG5238 RNA1 Ran GTPase-activa 98.2 5E-07 1.1E-11 77.0 2.1 247 12-269 28-318 (388)
49 KOG2982 Uncharacterized conser 98.2 4.3E-07 9.2E-12 78.4 1.2 104 40-144 49-158 (418)
50 KOG0531 Protein phosphatase 1, 98.2 2.2E-07 4.9E-12 88.2 -0.7 195 57-287 69-266 (414)
51 KOG2982 Uncharacterized conser 98.1 7.2E-07 1.6E-11 77.0 1.1 35 83-117 70-107 (418)
52 KOG3665 ZYG-1-like serine/thre 98.1 2E-06 4.4E-11 85.7 3.2 34 82-116 171-204 (699)
53 KOG4579 Leucine-rich repeat (L 98.0 7.5E-07 1.6E-11 68.1 -1.5 110 15-126 28-141 (177)
54 PF12799 LRR_4: Leucine Rich r 98.0 1.2E-05 2.6E-10 49.5 3.9 14 81-94 21-34 (44)
55 COG5238 RNA1 Ran GTPase-activa 97.9 2.1E-06 4.5E-11 73.3 0.3 150 167-329 155-318 (388)
56 KOG3665 ZYG-1-like serine/thre 97.9 5.3E-06 1.1E-10 82.7 2.8 132 60-206 122-259 (699)
57 KOG1947 Leucine rich repeat pr 97.9 2.2E-06 4.8E-11 83.3 -0.8 42 312-353 400-443 (482)
58 PF12799 LRR_4: Leucine Rich r 97.8 2.9E-05 6.4E-10 47.8 4.1 40 36-77 1-40 (44)
59 KOG1644 U2-associated snRNP A' 97.8 3.4E-05 7.3E-10 63.2 5.1 124 16-142 21-150 (233)
60 KOG1644 U2-associated snRNP A' 97.8 5.2E-05 1.1E-09 62.1 5.8 102 15-117 43-150 (233)
61 PRK15386 type III secretion pr 97.7 0.00015 3.3E-09 67.0 8.3 116 10-145 48-169 (426)
62 KOG1947 Leucine rich repeat pr 97.6 1.4E-05 2.9E-10 77.8 0.4 109 35-144 187-307 (482)
63 KOG4579 Leucine-rich repeat (L 97.6 6.9E-06 1.5E-10 62.9 -1.4 86 15-102 54-141 (177)
64 PRK15386 type III secretion pr 97.2 0.00081 1.8E-08 62.4 6.9 134 34-207 50-187 (426)
65 KOG2739 Leucine-rich acidic nu 97.2 0.00014 3.1E-09 62.1 1.4 104 33-138 40-149 (260)
66 PF13306 LRR_5: Leucine rich r 97.2 0.0019 4.1E-08 50.4 7.7 118 9-134 7-128 (129)
67 KOG2739 Leucine-rich acidic nu 97.1 0.00025 5.3E-09 60.6 1.8 103 13-117 42-153 (260)
68 KOG2123 Uncharacterized conser 97.1 3.4E-05 7.3E-10 66.3 -3.4 100 35-138 18-123 (388)
69 KOG2123 Uncharacterized conser 96.7 6.7E-05 1.5E-09 64.5 -4.7 99 12-113 17-123 (388)
70 KOG3864 Uncharacterized conser 96.4 0.0003 6.5E-09 57.8 -2.8 65 217-288 120-188 (221)
71 PF13306 LRR_5: Leucine rich r 95.9 0.028 6.1E-07 43.6 6.4 102 33-141 9-112 (129)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.0076 1.7E-07 30.7 0.6 9 62-70 2-10 (22)
73 PF13504 LRR_7: Leucine rich r 94.8 0.022 4.7E-07 26.9 1.5 17 337-354 1-17 (17)
74 KOG3864 Uncharacterized conser 94.3 0.023 5E-07 47.0 1.6 82 134-230 103-184 (221)
75 PF00560 LRR_1: Leucine Rich R 94.3 0.022 4.8E-07 29.0 1.0 18 86-103 2-19 (22)
76 smart00370 LRR Leucine-rich re 89.5 0.39 8.5E-06 25.3 2.3 20 36-55 2-21 (26)
77 smart00369 LRR_TYP Leucine-ric 89.5 0.39 8.5E-06 25.3 2.3 20 36-55 2-21 (26)
78 smart00370 LRR Leucine-rich re 88.8 0.45 9.7E-06 25.1 2.2 19 84-102 2-20 (26)
79 smart00369 LRR_TYP Leucine-ric 88.8 0.45 9.7E-06 25.1 2.2 19 84-102 2-20 (26)
80 smart00367 LRR_CC Leucine-rich 87.9 0.29 6.3E-06 25.9 1.1 17 336-352 1-17 (26)
81 KOG0473 Leucine-rich repeat pr 86.7 0.019 4.2E-07 48.5 -5.9 83 33-117 39-121 (326)
82 KOG0473 Leucine-rich repeat pr 84.1 0.029 6.3E-07 47.5 -6.1 95 49-146 31-125 (326)
83 KOG4308 LRR-containing protein 78.9 0.028 6.2E-07 54.1 -9.1 21 162-182 283-303 (478)
84 KOG4308 LRR-containing protein 78.7 0.025 5.3E-07 54.5 -9.6 34 254-287 262-301 (478)
85 smart00364 LRR_BAC Leucine-ric 74.1 2.2 4.9E-05 22.6 1.3 18 84-101 2-19 (26)
86 PF13516 LRR_6: Leucine Rich r 67.8 3.4 7.4E-05 21.1 1.2 15 132-146 2-16 (24)
87 KOG3763 mRNA export factor TAP 64.8 1.5 3.2E-05 42.2 -1.0 35 252-286 216-254 (585)
88 smart00365 LRR_SD22 Leucine-ri 61.1 7.8 0.00017 20.5 1.7 14 84-97 2-15 (26)
89 smart00368 LRR_RI Leucine rich 50.6 14 0.00031 19.7 1.8 14 84-97 2-15 (28)
90 KOG3763 mRNA export factor TAP 44.2 11 0.00024 36.5 1.1 81 33-113 215-307 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=7.8e-24 Score=221.96 Aligned_cols=323 Identities=22% Similarity=0.182 Sum_probs=144.6
Q ss_pred cCCCccccEEEcccccccc-ccCC--CCCCCCcEEEccCCccC-ccChHHHhcCccccEEEeecCCCCccccccccCCCc
Q 044468 10 IGMWKEITRMSLMQNAIQN-LTET--PTCPHLRALFLHSNHLG-TVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVS 85 (396)
Q Consensus 10 ~~~~~~L~~L~l~~~~~~~-l~~~--~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~ 85 (396)
+..+++|+.|++++|.+.. +|.. ..+++|++|++++|.+. .+|. ..+++|++|++++|...+.+|..++++++
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCC
Confidence 4445555555555555543 4433 24555555555555442 2222 23455555555555222244444555555
Q ss_pred CCEEEccCCCCC-ccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHh
Q 044468 86 LQHLDLSWTGIT-TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEE 164 (396)
Q Consensus 86 L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (396)
|++|++++|.+. .+|..+.++++|++|++++|.....+|.. ++.+++|++|++.+|.+.+. ....
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~-------------~p~~ 231 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGE-------------IPYE 231 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCCc-------------CChh
Confidence 555555555443 44555555555555555555444444444 55555555555555554431 3344
Q ss_pred hhcCCCCcEEEEEecccch-hhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccc
Q 044468 165 LLALKHLNLLTVTLQIFGA-LQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGE 243 (396)
Q Consensus 165 l~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~ 243 (396)
+.++++|+.|++..+.... .+ ..+.++++|+.|.+.++.-... ....+..+++|+.|+++.+.+.........
T Consensus 232 l~~l~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLTGPIP-----SSLGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred HhcCCCCCEEECcCceeccccC-----hhHhCCCCCCEEECcCCeeecc-CchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 4555555555555444321 11 1233344455555544321111 111234445555555553333211000000
Q ss_pred ---------------ccccccc-cccccCcEeEEeCceeec-CC-ccCCCCCccEEeeccccccceeecccccccchhcc
Q 044468 244 ---------------VKRIRET-RGFHSLQKVYINYSKFRH-AT-WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEV 305 (396)
Q Consensus 244 ---------------~~~~~~~-~~~~~L~~L~l~~~~l~~-l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 305 (396)
.+.+|.. +.+++|+.|++.+|.++. ++ .++.+++|+.|+++++.....+.
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p------------ 373 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP------------ 373 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC------------
Confidence 0011111 133444444444443322 11 13334444444444433111111
Q ss_pred ccccccccCcceeeccCCcccccccCCCCCCCCcceEEeccCcccccCCCCCCCCCCCceEEee
Q 044468 306 MDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIKG 369 (396)
Q Consensus 306 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~~ 369 (396)
.....+++|+.|++.++.-...++.....+++|+.|++.+|.--..+|... ...+.++.+..
T Consensus 374 -~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L 435 (968)
T PLN00113 374 -EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDI 435 (968)
T ss_pred -hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH-hcCCCCCEEEC
Confidence 123344556666666554333444445567778888887775333444432 23345555543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=1.1e-23 Score=220.85 Aligned_cols=322 Identities=19% Similarity=0.184 Sum_probs=216.3
Q ss_pred cCCCccccEEEccccccccccCCCCCCCCcEEEccCCccC-ccChHHHhcCccccEEEeecCCCCccccccccCCCcCCE
Q 044468 10 IGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLG-TVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQH 88 (396)
Q Consensus 10 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~ 88 (396)
+..+++|++|++++|.+.+......+++|++|++++|.+. .+|.. +..+++|++|++++|...+.+|..++++++|++
T Consensus 114 ~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 114 FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred hccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 3378899999999998876322356788999999998875 56666 888999999999988445577888888899999
Q ss_pred EEccCCCCC-ccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhc
Q 044468 89 LDLSWTGIT-TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLA 167 (396)
Q Consensus 89 L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 167 (396)
|++++|.+. .+|..++++++|++|++++|.....+|.. ++.+++|++|++.+|.+.+. ....+.+
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~-------------~p~~l~~ 258 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGP-------------IPSSLGN 258 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccc-------------cChhHhC
Confidence 999888776 67888888889999999888777777776 88888889888888877653 4445566
Q ss_pred CCCCcEEEEEecccch-hh-hhhhc------------------cCCCCCcccceEEecccCCCcccchhhhhccccccce
Q 044468 168 LKHLNLLTVTLQIFGA-LQ-RLLNY------------------CNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTL 227 (396)
Q Consensus 168 l~~L~~L~l~~~~~~~-~~-~~~~~------------------~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 227 (396)
+++|+.|++..+.... .+ .+... ..+.++++|+.|++.++..... ....+..+++|+.|
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L 337 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK-IPVALTSLPRLQVL 337 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc-CChhHhcCCCCCEE
Confidence 6666666665554321 11 00000 1122333444444444322111 11124445555555
Q ss_pred eeeccccceeeeccccccccccc-cccccCcEeEEeCceeec-CC-ccCCCCCccEEeeccccccceeecccccccchhc
Q 044468 228 HLYFNDFEELNIDAGEVKRIRET-RGFHSLQKVYINYSKFRH-AT-WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAE 304 (396)
Q Consensus 228 ~l~~~~i~~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~-l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 304 (396)
+++.+.+. +.+|.. +.+++|+.|++++|.++. ++ .+..+++|+.|+++++.....+..
T Consensus 338 ~L~~n~l~---------~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~---------- 398 (968)
T PLN00113 338 QLWSNKFS---------GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK---------- 398 (968)
T ss_pred ECcCCCCc---------CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH----------
Confidence 55544443 223332 478999999999997665 33 366789999999998864333322
Q ss_pred cccccccccCcceeeccCCcccccccCCCCCCCCcceEEeccCcccccCCCCCCCCCCCceEEeeh
Q 044468 305 VMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQ 370 (396)
Q Consensus 305 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~~~ 370 (396)
....+++|+.|++.+|.--..++.....+++|+.|++.++. +...++......+.++.+...
T Consensus 399 ---~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~ 460 (968)
T PLN00113 399 ---SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN-LQGRINSRKWDMPSLQMLSLA 460 (968)
T ss_pred ---HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc-ccCccChhhccCCCCcEEECc
Confidence 45678999999999996444566667789999999999885 554433333334666666543
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=4.8e-25 Score=201.85 Aligned_cols=311 Identities=18% Similarity=0.193 Sum_probs=159.2
Q ss_pred cCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCC
Q 044468 10 IGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQ 87 (396)
Q Consensus 10 ~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~ 87 (396)
|.++++|+.+++..|.++.+|.. ....+|+.|++.+|.|.++..+.++-++.||.||++.| .+..+| ..+..-.+++
T Consensus 98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIK 176 (873)
T ss_pred HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCce
Confidence 44555566666666655555555 44455666666666555555444555566666666666 555444 2333445566
Q ss_pred EEEccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhh
Q 044468 88 HLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELL 166 (396)
Q Consensus 88 ~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 166 (396)
+|+|++|.|+.+-.+ +..+.+|..|.+++| .+..+|..+|.+++.|+.|++..|.+.-. ....+.
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iriv-------------e~ltFq 242 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIV-------------EGLTFQ 242 (873)
T ss_pred EEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeee-------------hhhhhc
Confidence 666666666544332 455556666666665 44455555455566666666666655432 233444
Q ss_pred cCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccc
Q 044468 167 ALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKR 246 (396)
Q Consensus 167 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~ 246 (396)
+++.|+.|.+..++...+++ ..+-.+.++++|++..+ .+.......+-++..|+.|+++.|.|+.+.++. |
T Consensus 243 gL~Sl~nlklqrN~I~kL~D----G~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~----W 313 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDD----GAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS----W 313 (873)
T ss_pred CchhhhhhhhhhcCcccccC----cceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeecch----h
Confidence 55555555555555444332 22333344555555442 122222122445566666666666666554421 1
Q ss_pred cccccccccCcEeEEeCceeecCCc--------------------------cCCCCCccEEeeccccccceeeccccccc
Q 044468 247 IRETRGFHSLQKVYINYSKFRHATW--------------------------LVLAPRAKVIRISNCQRLQEIISMEKLGE 300 (396)
Q Consensus 247 ~~~~~~~~~L~~L~l~~~~l~~l~~--------------------------l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 300 (396)
..+++|+.|++++|+++.++. +.++.+|+.|+++.+. +...+. + +
T Consensus 314 ----sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IE-D--a- 384 (873)
T KOG4194|consen 314 ----SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIE-D--A- 384 (873)
T ss_pred ----hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEe-c--c-
Confidence 145666666666665555432 2234555555555443 222221 1 0
Q ss_pred chhccccccccccCcceeeccCCcccccccCC-CCCCCCcceEEeccCcccccCCCCCCCC
Q 044468 301 ISAEVMDNLILFGRLEYLILEGLQNLKSIHSS-YLPFPRLKEICVWKCAELKKLPLDCNQG 360 (396)
Q Consensus 301 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L~~lp~~~~~~ 360 (396)
+....++++|+.|.+.|+ +++.++-. ...++.|++|++.+.+ +.++-+..+..
T Consensus 385 -----a~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~ 438 (873)
T KOG4194|consen 385 -----AVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEP 438 (873)
T ss_pred -----hhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCc-ceeeccccccc
Confidence 013344666666666665 46655543 2235666666665543 44444444433
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.2e-24 Score=199.29 Aligned_cols=299 Identities=24% Similarity=0.259 Sum_probs=205.2
Q ss_pred CCCCCccCCCc-cccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-cc
Q 044468 4 LTGAPRIGMWK-EITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LG 79 (396)
Q Consensus 4 l~~~~~~~~~~-~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~ 79 (396)
+..+|.++... +++.|++.+|-|+++.+. ..++.|++|+++.|.+.+++...|..=.++++|+++.| .++.+. ..
T Consensus 114 Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~ 192 (873)
T KOG4194|consen 114 LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGH 192 (873)
T ss_pred hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-ccccccccc
Confidence 45678887765 499999999999987665 78999999999999998887665777788999999999 777554 45
Q ss_pred ccCCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCCCC-CcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468 80 ILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRI-PQPVISDLKMLRALRMFECGFKVEQEADRILFGD 157 (396)
Q Consensus 80 l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~-~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 157 (396)
|.++.+|..|.|++|.++.+|.. +.++++|+.|++..|+ +..+ ... |..+++|+.|.+..|.+...
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~lt-FqgL~Sl~nlklqrN~I~kL---------- 260 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLT-FQGLPSLQNLKLQRNDISKL---------- 260 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhh-hcCchhhhhhhhhhcCcccc----------
Confidence 77888999999999999999876 6679999999999983 4333 233 77889999999988887765
Q ss_pred chhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEeccc-----------------------CCCcccc
Q 044468 158 SEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHL-----------------------NNSNLLS 214 (396)
Q Consensus 158 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----------------------~~~~~~~ 214 (396)
...++-.+.+++.|++..+....... ..+-+++.|+.|+++.+ +.++..+
T Consensus 261 ---~DG~Fy~l~kme~l~L~~N~l~~vn~----g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 261 ---DDGAFYGLEKMEHLNLETNRLQAVNE----GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD 333 (873)
T ss_pred ---cCcceeeecccceeecccchhhhhhc----ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence 33445555556666666555543322 33344444555554432 2223333
Q ss_pred hhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceee----c-CCccCCCCCccEEeecccccc
Q 044468 215 AFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFR----H-ATWLVLAPRAKVIRISNCQRL 289 (396)
Q Consensus 215 ~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~----~-l~~l~~l~~L~~L~l~~~~~l 289 (396)
...+..+..|++|+++.|.++.+..... .++++|++|++..|.+. + -..+.++++|+.|++.++. +
T Consensus 334 ~~sf~~L~~Le~LnLs~Nsi~~l~e~af--------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-l 404 (873)
T KOG4194|consen 334 EGSFRVLSQLEELNLSHNSIDHLAEGAF--------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-L 404 (873)
T ss_pred hhHHHHHHHhhhhcccccchHHHHhhHH--------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-e
Confidence 3334444555555555554444333211 16789999999988333 3 2346679999999999875 7
Q ss_pred ceeecccccccchhccccccccccCcceeeccCCcccccccCCCCCCCCcceEEe
Q 044468 290 QEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICV 344 (396)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i 344 (396)
..+... ...++++|+.|++.++. +.++-.....-..|++|.+
T Consensus 405 k~I~kr------------Afsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 405 KSIPKR------------AFSGLEALEHLDLGDNA-IASIQPNAFEPMELKELVM 446 (873)
T ss_pred eecchh------------hhccCcccceecCCCCc-ceeecccccccchhhhhhh
Confidence 777553 34569999999998875 4444433332226666654
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=3.6e-22 Score=210.28 Aligned_cols=306 Identities=19% Similarity=0.248 Sum_probs=186.9
Q ss_pred cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC
Q 044468 15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT 94 (396)
Q Consensus 15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~ 94 (396)
+||.|.+.++.+..+|......+|+.|++.++.+..++.+ +..+++|++|+++++..++.+|. ++.+++|++|++++|
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC 667 (1153)
T ss_pred ccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC
Confidence 4666666666666676665567888888888888877777 67888899999988766677764 778888999999887
Q ss_pred -CCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468 95 -GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL 173 (396)
Q Consensus 95 -~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 173 (396)
.+..+|..+.++++|+.|++++|.....+|.. + ++++|+.|.+.+|..... ... ...+|+.
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~-------------~p~---~~~nL~~ 729 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKS-------------FPD---ISTNISW 729 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccc-------------ccc---ccCCcCe
Confidence 56788888888899999999888777788875 3 788888888888754321 111 1245666
Q ss_pred EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcc------cchhhhhccccccceeeec-cccceeeeccccccc
Q 044468 174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNL------LSAFSFASLRHLWTLHLYF-NDFEELNIDAGEVKR 246 (396)
Q Consensus 174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~~l~~~~~L~~L~l~~-~~i~~l~~~~~~~~~ 246 (396)
|++..+....++... .+++|+.|.+.++..... ........+++|+.|+++. ..+..+....
T Consensus 730 L~L~~n~i~~lP~~~------~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si----- 798 (1153)
T PLN03210 730 LDLDETAIEEFPSNL------RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI----- 798 (1153)
T ss_pred eecCCCccccccccc------cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh-----
Confidence 666666554433211 122344444433211000 0000011123455555542 2222111110
Q ss_pred cccccccccCcEeEEeCc-eeecCCccCCCCCccEEeeccccccceeeccc-------ccccchhccccccccccCccee
Q 044468 247 IRETRGFHSLQKVYINYS-KFRHATWLVLAPRAKVIRISNCQRLQEIISME-------KLGEISAEVMDNLILFGRLEYL 318 (396)
Q Consensus 247 ~~~~~~~~~L~~L~l~~~-~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~L~~L 318 (396)
+.+++|+.|++.+| .++.+|....+++|++|++++|..+..++... ..++....++..+..+++|+.|
T Consensus 799 ----~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L 874 (1153)
T PLN03210 799 ----QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFL 874 (1153)
T ss_pred ----hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEE
Confidence 14455555555555 44444443345555555555554433321100 0000000122256778999999
Q ss_pred eccCCcccccccCCCCCCCCcceEEeccCcccccCCC
Q 044468 319 ILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPL 355 (396)
Q Consensus 319 ~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~ 355 (396)
++.+|.++..++.....+++|+.+++.+|+.|+.++.
T Consensus 875 ~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 875 DMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred ECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 9999999999888888889999999999998886654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=2.9e-25 Score=204.90 Aligned_cols=330 Identities=20% Similarity=0.275 Sum_probs=226.6
Q ss_pred CCCCCC-ccCCCccccEEEccccccccccCC-CCCCCCcEEEccCCcc--CccChHHHhcCccccEEEeecCCCCccccc
Q 044468 3 GLTGAP-RIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHL--GTVSNNFFHSMASLRVLIFLYNRSLENLPL 78 (396)
Q Consensus 3 ~l~~~~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~ 78 (396)
++.++| .++.+.+|.+|++.+|++.++... ..++.||.+.+..|.+ +.+|.. +-++..|..||+++| .+...|.
T Consensus 43 ~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN-qL~EvP~ 120 (1255)
T KOG0444|consen 43 KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN-QLREVPT 120 (1255)
T ss_pred hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchh-hhhhcch
Confidence 344454 456677888889998888886666 8888999988888877 467877 778889999999998 8888888
Q ss_pred cccCCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468 79 GILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGD 157 (396)
Q Consensus 79 ~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 157 (396)
.+.+.+++-+|++++|+|..+|.. +.++.-|-+||+++| .+..+|.. ++.+.+|++|.+++|.+...
T Consensus 121 ~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~hf---------- 188 (1255)
T KOG0444|consen 121 NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNHF---------- 188 (1255)
T ss_pred hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhHH----------
Confidence 888888999999999999888876 457888889999887 66677776 88888999999998887763
Q ss_pred chhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecccccee
Q 044468 158 SEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL 237 (396)
Q Consensus 158 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l 237 (396)
-+..++.+..|+.|.+++....-. .+ .+.+-.+++|+.++++..+ +...+ ..+-++++|++|+++.|+|+.+
T Consensus 189 ---QLrQLPsmtsL~vLhms~TqRTl~-N~--Ptsld~l~NL~dvDlS~N~-Lp~vP-ecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 189 ---QLRQLPSMTSLSVLHMSNTQRTLD-NI--PTSLDDLHNLRDVDLSENN-LPIVP-ECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred ---HHhcCccchhhhhhhcccccchhh-cC--CCchhhhhhhhhccccccC-CCcch-HHHhhhhhhheeccCcCceeee
Confidence 566677777777777665443211 00 0223334446666665432 22221 1245566777777777777665
Q ss_pred eeccccc-------------cccccc-cccccCcEeEEeCc--eeecCCc-cCCCCCccEEeeccccccceeeccccccc
Q 044468 238 NIDAGEV-------------KRIRET-RGFHSLQKVYINYS--KFRHATW-LVLAPRAKVIRISNCQRLQEIISMEKLGE 300 (396)
Q Consensus 238 ~~~~~~~-------------~~~~~~-~~~~~L~~L~l~~~--~l~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 300 (396)
..+.... ..+|.. +.+++|+.|++.+| .+..+|+ +|++..|+.+...++. ++-++.
T Consensus 261 ~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPE------ 333 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPE------ 333 (1255)
T ss_pred eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCch------
Confidence 5432210 123333 45667777777666 4445554 6667777777666543 333332
Q ss_pred chhccccccccccCcceeeccCCcccccccCCCCCCCCcceEEeccCcccccCCCCCCCCCCCceEEeeh
Q 044468 301 ISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQ 370 (396)
Q Consensus 301 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~~~ 370 (396)
++..|++|+.|.+..+ .+-.+|..+..++.|+.|++.+.|+|. +|+.+.-..+.+.--+.+
T Consensus 334 -------glcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLV-MPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 334 -------GLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLV-MPPKPNDARKKLEFYNID 394 (1255)
T ss_pred -------hhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCcc-CCCCcchhhhcceeeecc
Confidence 6778899999998654 677888888889999999999988876 455444443455444444
No 7
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.88 E-value=5.7e-23 Score=206.48 Aligned_cols=366 Identities=33% Similarity=0.456 Sum_probs=271.5
Q ss_pred CCCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCc--cCccChHHHhcCccccEEEeecCCCCcccccc
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNH--LGTVSNNFFHSMASLRVLIFLYNRSLENLPLG 79 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~ 79 (396)
+|+...|....+..+|++++.++.+..++....++.|++|-+..+. +..++..+|..++.|++||+++|....++|..
T Consensus 511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred cCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 5677788888899999999999999998888788899999999985 67888888999999999999999888999999
Q ss_pred ccCCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCch
Q 044468 80 ILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSE 159 (396)
Q Consensus 80 l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 159 (396)
++.+.+|++|+++++.+..+|.+++++++|.+|++..+.....++. +...+.+||+|.+....... +.
T Consensus 591 I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~-----------~~ 658 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSN-----------DK 658 (889)
T ss_pred HhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeecccccc-----------ch
Confidence 9999999999999999999999999999999999998866666644 36679999999998775322 23
Q ss_pred hhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeee
Q 044468 160 VLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNI 239 (396)
Q Consensus 160 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~ 239 (396)
.....+.++++|+.+............+..+..+..+ .+.+.+.++.. ......+..+.+|+.|.+....+.+...
T Consensus 659 ~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~--~~~l~~~~~~~--~~~~~~~~~l~~L~~L~i~~~~~~e~~~ 734 (889)
T KOG4658|consen 659 LLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSL--LQSLSIEGCSK--RTLISSLGSLGNLEELSILDCGISEIVI 734 (889)
T ss_pred hhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHH--hHhhhhccccc--ceeecccccccCcceEEEEcCCCchhhc
Confidence 4677778888888777755544333333333333333 33444332221 1122346788999999999444433322
Q ss_pred ccccccccccccccccCcEeEEeCc-eeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccCccee
Q 044468 240 DAGEVKRIRETRGFHSLQKVYINYS-KFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYL 318 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 318 (396)
.....+... . .|+++..+.+.+| ..+++.+..-.|+|+.|.+..|..+++++.....-. ........|+++..+
T Consensus 735 ~~~~~~~~~-~-~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~---~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 735 EWEESLIVL-L-CFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL---ELKELILPFNKLEGL 809 (889)
T ss_pred ccccccchh-h-hHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhh---hcccEEecccccccc
Confidence 111100000 0 2778888888899 888888877789999999999999888866332211 111134667777777
Q ss_pred -eccCCcccccccCCCCCCCCcceEEeccCcccccCCCCCCCCCCCc--eEE-eehHHHHHhhcCCcHHHHHhh
Q 044468 319 -ILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQK--III-KGQDRWWNELQWDDQATQNAS 388 (396)
Q Consensus 319 -~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~l--~~~-~~~~~~~~~~~~~~~~~~~~~ 388 (396)
.+.+.+.+..+......++.|+.+.+..||++..+|.......... ... ..+..|.+.++|++++++..+
T Consensus 810 ~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 810 RMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred eeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 4777777777766666788899999999999999999766554332 223 355789999999999998877
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.1e-24 Score=201.16 Aligned_cols=275 Identities=23% Similarity=0.240 Sum_probs=163.3
Q ss_pred ccCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCC
Q 044468 9 RIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQ 87 (396)
Q Consensus 9 ~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~ 87 (396)
.+.+++.|+.|+++.|++...|.. ...+++-+|++++|.|+.||...+-++..|-+||+++| .+..+|+.+..+.+|+
T Consensus 98 diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred hhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhh
Confidence 344455555555555555555544 55555555555555555555555555555555555555 5555555555555555
Q ss_pred EEEccCCCCCcc-chhhhcCCcccEEecccccC-CCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhh
Q 044468 88 HLDLSWTGITTL-PIELKYLVNLKCLNLEYTFC-LSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEEL 165 (396)
Q Consensus 88 ~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~-~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (396)
+|++++|.+... ...+..|.+|++|+++++.. ...+|.. +..+.+|+.++++.|.+.. .+..+
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp~--------------vPecl 241 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLPI--------------VPECL 241 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCCc--------------chHHH
Confidence 555555544311 11233445555555555422 2334544 5555555555555555443 56666
Q ss_pred hcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccc
Q 044468 166 LALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVK 245 (396)
Q Consensus 166 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~ 245 (396)
-++++|+.|.++++.+..+... .....+|+.|+++... ++..+ +++.+++.|+.|.+..|+++=.+
T Consensus 242 y~l~~LrrLNLS~N~iteL~~~-----~~~W~~lEtLNlSrNQ-Lt~LP-~avcKL~kL~kLy~n~NkL~FeG------- 307 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKITELNMT-----EGEWENLETLNLSRNQ-LTVLP-DAVCKLTKLTKLYANNNKLTFEG------- 307 (1255)
T ss_pred hhhhhhheeccCcCceeeeecc-----HHHHhhhhhhccccch-hccch-HHHhhhHHHHHHHhccCcccccC-------
Confidence 6677777777777766543321 1112336667776532 22222 34667778888877766654222
Q ss_pred ccccc-cccccCcEeEEeCceeecCC-ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCC
Q 044468 246 RIRET-RGFHSLQKVYINYSKFRHAT-WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGL 323 (396)
Q Consensus 246 ~~~~~-~~~~~L~~L~l~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 323 (396)
+|.. |.+.+|+.+...+|.+.-+| .++.|+.|+.|.+..+. +-.++. .++.++.|+.|++..+
T Consensus 308 -iPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPe-------------aIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 308 -IPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPE-------------AIHLLPDLKVLDLREN 372 (1255)
T ss_pred -CccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechh-------------hhhhcCCcceeeccCC
Confidence 3433 57888999988998777665 47889999999997654 555544 8889999999999999
Q ss_pred ccccc
Q 044468 324 QNLKS 328 (396)
Q Consensus 324 ~~l~~ 328 (396)
+++--
T Consensus 373 pnLVM 377 (1255)
T KOG0444|consen 373 PNLVM 377 (1255)
T ss_pred cCccC
Confidence 98753
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=2.9e-20 Score=195.95 Aligned_cols=310 Identities=17% Similarity=0.169 Sum_probs=204.4
Q ss_pred CCCCCccCCCccccEEEccccccccccCC-CCCCCCcEEEccCC-ccCccChHHHhcCccccEEEeecCCCCcccccccc
Q 044468 4 LTGAPRIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSN-HLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL 81 (396)
Q Consensus 4 l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~ 81 (396)
++.+|..-...+|+.|++.++.+..++.. ..+++|+.|+++++ .+..+|. +..+++|++|++++|..+..+|..++
T Consensus 601 l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~ 678 (1153)
T PLN03210 601 LRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQ 678 (1153)
T ss_pred CCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhh
Confidence 34455444567999999999999998877 88999999999987 4677775 78899999999999978889999999
Q ss_pred CCCcCCEEEccCC-CCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchh-------
Q 044468 82 NLVSLQHLDLSWT-GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRI------- 153 (396)
Q Consensus 82 ~l~~L~~L~l~~~-~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~------- 153 (396)
++++|++|++++| .++.+|..+ ++++|++|++++|.....+|. ..++|++|++.++.+...+.....
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~ 753 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPSNLRLENLDELI 753 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccccccccccccccccc
Confidence 9999999999998 678888765 789999999999976666654 246788999988876543110000
Q ss_pred -ccCC--------chhhhHhhhcCCCCcEEEEEeccc-chhhhhhhccCCCCCcccceEEecccCCCcccchhhhhcccc
Q 044468 154 -LFGD--------SEVLVEELLALKHLNLLTVTLQIF-GALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRH 223 (396)
Q Consensus 154 -~~~~--------~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 223 (396)
.... ...........+.|+.|++.++.. ..++ ..+.++++|+.|++.+|......+. ..++++
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-----~si~~L~~L~~L~Ls~C~~L~~LP~--~~~L~s 826 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-----SSIQNLHKLEHLEIENCINLETLPT--GINLES 826 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCCccccC-----hhhhCCCCCCEEECCCCCCcCeeCC--CCCccc
Confidence 0000 000000000112344444433221 1111 1233444555555555544333221 113455
Q ss_pred ccceeee-ccccceeeeccccccccccccccccCcEeEEeCceeecCCc-cCCCCCccEEeeccccccceeecccccccc
Q 044468 224 LWTLHLY-FNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW-LVLAPRAKVIRISNCQRLQEIISMEKLGEI 301 (396)
Q Consensus 224 L~~L~l~-~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 301 (396)
|+.|+++ |..+..+ |. ...+|++|++.++.++.+|. +..+++|+.|++.+|..+..+..
T Consensus 827 L~~L~Ls~c~~L~~~----------p~--~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~------- 887 (1153)
T PLN03210 827 LESLDLSGCSRLRTF----------PD--ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL------- 887 (1153)
T ss_pred cCEEECCCCCccccc----------cc--cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc-------
Confidence 5555555 3333321 11 34567778877777777664 67789999999999998887754
Q ss_pred hhccccccccccCcceeeccCCcccccccCCC-------------CCCCCcceEEeccCccccc
Q 044468 302 SAEVMDNLILFGRLEYLILEGLQNLKSIHSSY-------------LPFPRLKEICVWKCAELKK 352 (396)
Q Consensus 302 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------------~~~~~L~~L~i~~c~~L~~ 352 (396)
....+++|+.+++.+|..+..++... ..+|....+.+.+|.+|..
T Consensus 888 ------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 888 ------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred ------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 45678999999999999887654321 2345556677888887764
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=1.2e-19 Score=159.86 Aligned_cols=306 Identities=19% Similarity=0.224 Sum_probs=192.1
Q ss_pred CCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccccc-CCCcCCEE
Q 044468 12 MWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NLVSLQHL 89 (396)
Q Consensus 12 ~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~-~l~~L~~L 89 (396)
.|+.|++++...|.+..+|.. ..+..|..|++..|++..+|. |..|..|+.|.++.| .+..+|...+ .++++.+|
T Consensus 181 ~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe--f~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE--FPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC--CCccHHHHHHHhccc-HHHhhHHHHhcccccceee
Confidence 377778888888877777777 777777778888888777774 778888888888877 7777776555 77788888
Q ss_pred EccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchh---cc----------------
Q 044468 90 DLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQ---EA---------------- 150 (396)
Q Consensus 90 ~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~---~~---------------- 150 (396)
|++.|+++++|..++.+++|.+||+++| -+..+|.. ++++ .|+.|.+.||.+..+. ++
T Consensus 258 DLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~ 334 (565)
T KOG0472|consen 258 DLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKD 334 (565)
T ss_pred eccccccccCchHHHHhhhhhhhcccCC-ccccCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhcc
Confidence 8888888888888877888888888776 55566666 7777 7777777777665430 00
Q ss_pred chh---------ccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccC-------------
Q 044468 151 DRI---------LFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLN------------- 208 (396)
Q Consensus 151 ~~~---------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~------------- 208 (396)
+++ ..+...........+.+.++|++++-....+++......-.+. .+..+++...
T Consensus 335 dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~--Vt~VnfskNqL~elPk~L~~lke 412 (565)
T KOG0472|consen 335 DGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEI--VTSVNFSKNQLCELPKRLVELKE 412 (565)
T ss_pred CCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcc--eEEEecccchHhhhhhhhHHHHH
Confidence 001 0011122233444556667777766665554443322111111 2233332211
Q ss_pred ---------CCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCCccCC-CCCc
Q 044468 209 ---------NSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVL-APRA 278 (396)
Q Consensus 209 ---------~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~-l~~L 278 (396)
.........+..+++|..|++++|-+.++..+.. ++..|+.|+++.|+++.+|-..+ +..|
T Consensus 413 lvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~---------~lv~Lq~LnlS~NrFr~lP~~~y~lq~l 483 (565)
T KOG0472|consen 413 LVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMG---------SLVRLQTLNLSFNRFRMLPECLYELQTL 483 (565)
T ss_pred HHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhh---------hhhhhheecccccccccchHHHhhHHHH
Confidence 1111111235556666666666666665554433 45567777777776666554333 3333
Q ss_pred cEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCCCCCCCCcceEEeccCc
Q 044468 279 KVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCA 348 (396)
Q Consensus 279 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 348 (396)
+.+-.+++ ++..+.. +++..+.+|..|++.+. .+..+|...+.+.+|++|+++|.|
T Consensus 484 Etllas~n-qi~~vd~------------~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 484 ETLLASNN-QIGSVDP------------SGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHHHhccc-cccccCh------------HHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 43333332 2333322 25778999999999876 699999999999999999999876
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=1.4e-19 Score=159.34 Aligned_cols=251 Identities=22% Similarity=0.255 Sum_probs=121.7
Q ss_pred ccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC
Q 044468 16 ITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT 94 (396)
Q Consensus 16 L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~ 94 (396)
+..+++++|++..+... .++..|.+|.+.++++..+|++ ++.+..++.++.+++ .+..+|+.++.+.+|.+++.+++
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~a-ig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAA-IGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHH-HHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhcccc
Confidence 44455555555554333 5555555666665555555555 555555555555555 55555555555555555555555
Q ss_pred CCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccc-h------h--ccCCchhhhHhh
Q 044468 95 GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEAD-R------I--LFGDSEVLVEEL 165 (396)
Q Consensus 95 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~-~------~--~~~~~~~~~~~l 165 (396)
.+.++|..++.+-.|..++..+| .+...|.+ +..+.++..+.+.++.+...+... . + ....-+..+..+
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~l 202 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNN-QISSLPED-MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPEL 202 (565)
T ss_pred ceeecCchHHHHhhhhhhhcccc-ccccCchH-HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhh
Confidence 55555555555555555555554 34444444 455555555555555444310000 0 0 000000134444
Q ss_pred hcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccc
Q 044468 166 LALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVK 245 (396)
Q Consensus 166 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~ 245 (396)
+.+..|+.|++..+....++ .++.|..|..|.++... ....+......++++..|++..|+++.+..+..
T Consensus 203 g~l~~L~~LyL~~Nki~~lP------ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c--- 272 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRFLP------EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC--- 272 (565)
T ss_pred cchhhhHHHHhhhcccccCC------CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccccccCchHHH---
Confidence 55555555555444443332 23444445555554321 111111123345555555555555554433221
Q ss_pred ccccccccccCcEeEEeCceeecCCc-cCCCCCccEEeecccc
Q 044468 246 RIRETRGFHSLQKVYINYSKFRHATW-LVLAPRAKVIRISNCQ 287 (396)
Q Consensus 246 ~~~~~~~~~~L~~L~l~~~~l~~l~~-l~~l~~L~~L~l~~~~ 287 (396)
-+++|++|++++|.++.+|. ++++ .|+.|.+.+++
T Consensus 273 ------lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 273 ------LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ------HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 45556666666665555554 4445 56666555554
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=2.2e-18 Score=166.33 Aligned_cols=104 Identities=18% Similarity=0.245 Sum_probs=55.3
Q ss_pred ccccCcEeEEeCceeecCCc--cCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccc
Q 044468 252 GFHSLQKVYINYSKFRHATW--LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSI 329 (396)
Q Consensus 252 ~~~~L~~L~l~~~~l~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 329 (396)
.+++|+.|.+++|++..+|. +.+++.|++|.++++. ++.+.. .+..++.|++|...++ .+..+
T Consensus 381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~-------------tva~~~~L~tL~ahsN-~l~~f 445 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPD-------------TVANLGRLHTLRAHSN-QLLSF 445 (1081)
T ss_pred cccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhH-------------HHHhhhhhHHHhhcCC-ceeec
Confidence 44555555555555554443 3345555555555543 444432 3445555555555443 34444
Q ss_pred cCCCCCCCCcceEEeccCccccc--CCCCCCCCCCCceEEeehHHHH
Q 044468 330 HSSYLPFPRLKEICVWKCAELKK--LPLDCNQGLEQKIIIKGQDRWW 374 (396)
Q Consensus 330 ~~~~~~~~~L~~L~i~~c~~L~~--lp~~~~~~~~~l~~~~~~~~~~ 374 (396)
| ....++.|+.++++ |.+|+. +|...++ ++|+..+...+.|
T Consensus 446 P-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~--p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 446 P-ELAQLPQLKVLDLS-CNNLSEVTLPEALPS--PNLKYLDLSGNTR 488 (1081)
T ss_pred h-hhhhcCcceEEecc-cchhhhhhhhhhCCC--cccceeeccCCcc
Confidence 5 44456778888874 566765 3332222 5777777666655
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.6e-18 Score=134.61 Aligned_cols=163 Identities=24% Similarity=0.355 Sum_probs=145.7
Q ss_pred CCCCccCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCC
Q 044468 5 TGAPRIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNL 83 (396)
Q Consensus 5 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l 83 (396)
.+++.+.+++++++|.+++|.++.+|.. ..+++|++|++.+|.++++|.+ ++++++|+.|+++-| .+..+|..++.+
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs~ 101 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGSF 101 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCCC
Confidence 3456677788999999999999998887 9999999999999999999998 999999999999999 888999999999
Q ss_pred CcCCEEEccCCCCC--ccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhh
Q 044468 84 VSLQHLDLSWTGIT--TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVL 161 (396)
Q Consensus 84 ~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 161 (396)
+.|++||+.+|++. .+|..+-.+..|+.|+++.| -..-+|.+ ++++++|+.|.+..|.+.. .
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll~--------------l 165 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLLS--------------L 165 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchhh--------------C
Confidence 99999999999887 78888889999999999997 55667887 9999999999999998775 6
Q ss_pred hHhhhcCCCCcEEEEEecccchhh
Q 044468 162 VEELLALKHLNLLTVTLQIFGALQ 185 (396)
Q Consensus 162 ~~~l~~l~~L~~L~l~~~~~~~~~ 185 (396)
+.+++.+..|+.|.++++....++
T Consensus 166 pkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cHHHHHHHHHHHHhcccceeeecC
Confidence 778888888999999999887655
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=1.1e-17 Score=161.66 Aligned_cols=295 Identities=22% Similarity=0.193 Sum_probs=160.5
Q ss_pred CCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEc
Q 044468 12 MWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDL 91 (396)
Q Consensus 12 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l 91 (396)
++++++.+....|++..+. -.-++|+.|...+|.+..+.. ...-.+|++++++.+ .+..+|++++.+.+|+.+++
T Consensus 197 ~~~~l~~l~c~rn~ls~l~--~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~ 271 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELE--ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHN-NLSNLPEWIGACANLEALNA 271 (1081)
T ss_pred hccchhhhhhhhcccceEE--ecCcchheeeeccCcceeecc--ccccccceeeecchh-hhhcchHHHHhcccceEecc
Confidence 3444555555555444332 123445555555554432211 112234555555555 55555555555555555555
Q ss_pred cCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccch-hccC----------Cchh
Q 044468 92 SWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADR-ILFG----------DSEV 160 (396)
Q Consensus 92 ~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~-~~~~----------~~~~ 160 (396)
.+|.+..+|..+..+.+|+.|.+..| ....+|.. .+..++|++|++..|.+...+.... +... ..+.
T Consensus 272 n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~ 349 (1081)
T KOG0618|consen 272 NHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST 349 (1081)
T ss_pred cchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc
Confidence 55555555555555555555555554 33444442 3345555555555554443210000 0000 0000
Q ss_pred -hhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeee
Q 044468 161 -LVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNI 239 (396)
Q Consensus 161 -~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~ 239 (396)
--..=..++.|+.|.+.++....-. .+.+.+.++|+.|+++.+ .+...+.+.+.++..|++|+++.|+++.+..
T Consensus 350 lp~~~e~~~~~Lq~LylanN~Ltd~c----~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNkL~~Lp~ 424 (1081)
T KOG0618|consen 350 LPSYEENNHAALQELYLANNHLTDSC----FPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNKLTTLPD 424 (1081)
T ss_pred cccccchhhHHHHHHHHhcCcccccc----hhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccchhhhhhH
Confidence 0000011233444555555543211 133455666888888763 3444454567888888999999888887764
Q ss_pred ccccccccccccccccCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccc-cCccee
Q 044468 240 DAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILF-GRLEYL 318 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L 318 (396)
+.. .++.|++|...+|.+..+|-+..++.|+.+|++.+ +++++.... ... |+|++|
T Consensus 425 tva---------~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~-------------~~p~p~LkyL 481 (1081)
T KOG0618|consen 425 TVA---------NLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCN-NLSEVTLPE-------------ALPSPNLKYL 481 (1081)
T ss_pred HHH---------hhhhhHHHhhcCCceeechhhhhcCcceEEecccc-hhhhhhhhh-------------hCCCccccee
Confidence 332 68889999888888888888888999999999854 577764411 222 899999
Q ss_pred eccCCcccccccCCCCCCCCcceEEe
Q 044468 319 ILEGLQNLKSIHSSYLPFPRLKEICV 344 (396)
Q Consensus 319 ~l~~~~~l~~~~~~~~~~~~L~~L~i 344 (396)
+++|+.++ -.+...++.++.+..
T Consensus 482 dlSGN~~l---~~d~~~l~~l~~l~~ 504 (1081)
T KOG0618|consen 482 DLSGNTRL---VFDHKTLKVLKSLSQ 504 (1081)
T ss_pred eccCCccc---ccchhhhHHhhhhhh
Confidence 99998752 222334455544443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=1e-14 Score=144.41 Aligned_cols=255 Identities=18% Similarity=0.146 Sum_probs=141.8
Q ss_pred cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC
Q 044468 15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT 94 (396)
Q Consensus 15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~ 94 (396)
+-..|+++++.++.+|.. -.++|+.|.+.+|.+..+|. ..++|++|++++| .++.+|.. .++|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~-l~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcc-hhcCCCEEEccCCcCCCCCC----CCCCCcEEEecCC-ccCcccCc---ccccceeeccCC
Confidence 445677777777777664 12367777777777776664 2467777777777 66666642 356777777777
Q ss_pred CCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEE
Q 044468 95 GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLL 174 (396)
Q Consensus 95 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 174 (396)
.++.+|.. ..+|+.|++.+| .+..+|. ..++|+.|++++|.+... +. + ...|+.|
T Consensus 273 ~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~----~p~~L~~LdLS~N~L~~L-----------p~----l--p~~L~~L 327 (788)
T PRK15387 273 PLTHLPAL---PSGLCKLWIFGN-QLTSLPV----LPPGLQELSVSDNQLASL-----------PA----L--PSELCKL 327 (788)
T ss_pred chhhhhhc---hhhcCEEECcCC-ccccccc----cccccceeECCCCccccC-----------CC----C--ccccccc
Confidence 77666642 245667777776 3444553 235677777777766542 00 0 1234445
Q ss_pred EEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccc
Q 044468 175 TVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFH 254 (396)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~ 254 (396)
.+..+.+..++.+ . .+|+.|+++++. +...+ . ..++|+.|+++.|.+..+. . ...
T Consensus 328 ~Ls~N~L~~LP~l------p--~~Lq~LdLS~N~-Ls~LP--~--lp~~L~~L~Ls~N~L~~LP----------~--l~~ 382 (788)
T PRK15387 328 WAYNNQLTSLPTL------P--SGLQELSVSDNQ-LASLP--T--LPSELYKLWAYNNRLTSLP----------A--LPS 382 (788)
T ss_pred ccccCcccccccc------c--cccceEecCCCc-cCCCC--C--CCcccceehhhccccccCc----------c--ccc
Confidence 5555554433321 1 136666666532 22211 0 1245566666655554322 1 234
Q ss_pred cCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCCCC
Q 044468 255 SLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYL 334 (396)
Q Consensus 255 ~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 334 (396)
+|+.|++++|.++.++.. .++|+.|+++++. ++.++. .+.+|+.|+++++ .++.+|....
T Consensus 383 ~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~-LssIP~----------------l~~~L~~L~Ls~N-qLt~LP~sl~ 442 (788)
T PRK15387 383 GLKELIVSGNRLTSLPVL--PSELKELMVSGNR-LTSLPM----------------LPSGLLSLSVYRN-QLTRLPESLI 442 (788)
T ss_pred ccceEEecCCcccCCCCc--ccCCCEEEccCCc-CCCCCc----------------chhhhhhhhhccC-cccccChHHh
Confidence 566666666666655543 2456666666654 343321 1335566666654 3555555555
Q ss_pred CCCCcceEEeccCc
Q 044468 335 PFPRLKEICVWKCA 348 (396)
Q Consensus 335 ~~~~L~~L~i~~c~ 348 (396)
.+++|+.|++.+++
T Consensus 443 ~L~~L~~LdLs~N~ 456 (788)
T PRK15387 443 HLSSETTVNLEGNP 456 (788)
T ss_pred hccCCCeEECCCCC
Confidence 56666666666554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=3.7e-14 Score=140.53 Aligned_cols=245 Identities=22% Similarity=0.197 Sum_probs=179.3
Q ss_pred CCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccC
Q 044468 3 GLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILN 82 (396)
Q Consensus 3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~ 82 (396)
+++.+|. .-.++++.|++.+|.++.+|. ..++|++|++++|.+..+|.. .++|+.|++++| .+..+|..
T Consensus 212 ~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L~~Lp~l--- 280 (788)
T PRK15387 212 GLTTLPD-CLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PLTHLPAL--- 280 (788)
T ss_pred CCCcCCc-chhcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc----ccccceeeccCC-chhhhhhc---
Confidence 4556654 113479999999999998875 468999999999999888752 468999999999 77777753
Q ss_pred CCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhh
Q 044468 83 LVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLV 162 (396)
Q Consensus 83 l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 162 (396)
..+|+.|++++|.++.+|.. .++|++|++++| .+..+|.. ..+|+.|.+.+|.+... .
T Consensus 281 p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~~L--------------P 338 (788)
T PRK15387 281 PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTSL--------------P 338 (788)
T ss_pred hhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCccccc--------------c
Confidence 36788999999999988863 478999999998 44556542 24578888888887653 1
Q ss_pred HhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccc
Q 044468 163 EELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAG 242 (396)
Q Consensus 163 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~ 242 (396)
.+ ...|+.|+++.+.+..++.. .++|+.|++.++. +.... ....+|+.|+++.|.++.+..
T Consensus 339 -~l--p~~Lq~LdLS~N~Ls~LP~l--------p~~L~~L~Ls~N~-L~~LP----~l~~~L~~LdLs~N~Lt~LP~--- 399 (788)
T PRK15387 339 -TL--PSGLQELSVSDNQLASLPTL--------PSELYKLWAYNNR-LTSLP----ALPSGLKELIVSGNRLTSLPV--- 399 (788)
T ss_pred -cc--ccccceEecCCCccCCCCCC--------Ccccceehhhccc-cccCc----ccccccceEEecCCcccCCCC---
Confidence 11 14788999999887765532 1237778777643 22211 123579999999888774331
Q ss_pred cccccccccccccCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccC
Q 044468 243 EVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEG 322 (396)
Q Consensus 243 ~~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 322 (396)
..++|+.|++++|.++.+|.+ ..+|+.|+++++. ++.++. .+..+++|+.|++++
T Consensus 400 ---------l~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~Nq-Lt~LP~-------------sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 400 ---------LPSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQ-LTRLPE-------------SLIHLSSETTVNLEG 454 (788)
T ss_pred ---------cccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCc-ccccCh-------------HHhhccCCCeEECCC
Confidence 357899999999988887754 4578899998875 666643 556789999999999
Q ss_pred Cc
Q 044468 323 LQ 324 (396)
Q Consensus 323 ~~ 324 (396)
++
T Consensus 455 N~ 456 (788)
T PRK15387 455 NP 456 (788)
T ss_pred CC
Confidence 85
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=5.2e-14 Score=140.16 Aligned_cols=248 Identities=18% Similarity=0.186 Sum_probs=160.5
Q ss_pred cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC
Q 044468 15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT 94 (396)
Q Consensus 15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~ 94 (396)
+.+.|.+++++++.+|.. -.++|+.|++++|.+..+|.. + +.+|++|++++| .+..+|..+. .+|+.|++++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~-l--~~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPEN-L--QGNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChh-h--ccCCCEEECCCC-ccccCChhhh--ccccEEECcCC
Confidence 567788888888887764 124788888888888888775 2 257888888888 7777776443 47888889888
Q ss_pred CCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEE
Q 044468 95 GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLL 174 (396)
Q Consensus 95 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 174 (396)
.+..+|..+. .+|+.|++++| .+..+|.. +. ++|+.|++++|.++.. ...+. ..|+.|
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~L--------------P~~lp--~sL~~L 309 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSIRTL--------------PAHLP--SGITHL 309 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCccccC--------------cccch--hhHHHH
Confidence 8888887654 47888888887 44466664 32 4788888888877653 11111 245666
Q ss_pred EEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccc
Q 044468 175 TVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFH 254 (396)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~ 254 (396)
++..+....++.. + .++|+.|.+.++.- +... ..+ +++|+.|+++.|++..+. .. ..+
T Consensus 310 ~Ls~N~Lt~LP~~-----l--~~sL~~L~Ls~N~L-t~LP-~~l--~~sL~~L~Ls~N~L~~LP----------~~-lp~ 367 (754)
T PRK15370 310 NVQSNSLTALPET-----L--PPGLKTLEAGENAL-TSLP-ASL--PPELQVLDVSKNQITVLP----------ET-LPP 367 (754)
T ss_pred HhcCCccccCCcc-----c--cccceeccccCCcc-ccCC-hhh--cCcccEEECCCCCCCcCC----------hh-hcC
Confidence 6666665544321 1 13477787776542 2221 112 267888888877765432 21 346
Q ss_pred cCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCc
Q 044468 255 SLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQ 324 (396)
Q Consensus 255 ~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 324 (396)
+|++|++.+|.++.+|.-- .++|+.|+++++. +..+.. .+......++++..|++.+++
T Consensus 368 ~L~~LdLs~N~Lt~LP~~l-~~sL~~LdLs~N~-L~~LP~---------sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 368 TITTLDVSRNALTNLPENL-PAALQIMQASRNN-LVRLPE---------SLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CcCEEECCCCcCCCCCHhH-HHHHHHHhhccCC-cccCch---------hHHHHhhcCCCccEEEeeCCC
Confidence 7888888888777765421 2468888888764 555432 111223345777888887764
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=1.1e-13 Score=137.91 Aligned_cols=232 Identities=21% Similarity=0.234 Sum_probs=159.1
Q ss_pred CCCCCCc-cCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccccc
Q 044468 3 GLTGAPR-IGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL 81 (396)
Q Consensus 3 ~l~~~~~-~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~ 81 (396)
+++.+|. + .+.++.|++++|.++.+|.. ...+|+.|++++|.+..+|.. +. .+|+.|++++| .+..+|..+.
T Consensus 189 ~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~-l~--~~L~~L~Ls~N-~L~~LP~~l~ 261 (754)
T PRK15370 189 GLTTIPACI--PEQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPAT-LP--DTIQEMELSIN-RITELPERLP 261 (754)
T ss_pred CcCcCCccc--ccCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChh-hh--ccccEEECcCC-ccCcCChhHh
Confidence 4555553 3 34788999999988887764 235899999999988888765 32 47889999998 7777776553
Q ss_pred CCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhh
Q 044468 82 NLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVL 161 (396)
Q Consensus 82 ~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 161 (396)
.+|+.|++++|.++.+|..+. ++|++|++++| .+..+|.. +. ++|+.|++.+|.+...
T Consensus 262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~L-------------- 319 (754)
T PRK15370 262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLTAL-------------- 319 (754)
T ss_pred --CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCccccC--------------
Confidence 578999999888888887553 57899999887 44456654 22 4688888888877653
Q ss_pred hHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecc
Q 044468 162 VEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDA 241 (396)
Q Consensus 162 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~ 241 (396)
...+ .++|+.|.+..+....++.. +. ++|+.|++.++.- ...+ ..+ .++|+.|++++|.+..+.
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~LP~~-----l~--~sL~~L~Ls~N~L-~~LP-~~l--p~~L~~LdLs~N~Lt~LP--- 383 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTSLPAS-----LP--PELQVLDVSKNQI-TVLP-ETL--PPTITTLDVSRNALTNLP--- 383 (754)
T ss_pred Cccc--cccceeccccCCccccCChh-----hc--CcccEEECCCCCC-CcCC-hhh--cCCcCEEECCCCcCCCCC---
Confidence 1111 15677788877776655421 11 3588888887643 2221 112 267888999877776432
Q ss_pred ccccccccccccccCcEeEEeCceeecCCc-----cCCCCCccEEeecccc
Q 044468 242 GEVKRIRETRGFHSLQKVYINYSKFRHATW-----LVLAPRAKVIRISNCQ 287 (396)
Q Consensus 242 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-----l~~l~~L~~L~l~~~~ 287 (396)
.. -...|+.|++.+|.++.+|. .+.++.+..|++.+++
T Consensus 384 -------~~-l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 384 -------EN-LPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred -------Hh-HHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 22 23468888898887777653 2345788888888776
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.47 E-value=1.3e-15 Score=134.33 Aligned_cols=270 Identities=21% Similarity=0.183 Sum_probs=178.6
Q ss_pred CCCCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc
Q 044468 1 GAGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL 78 (396)
Q Consensus 1 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~ 78 (396)
|+|++.+|. .--+.-+.+.++.|+|+.+|.. ..+++||.|++++|.|+.|.+.+|..++.|..|-+.+++.++.+|.
T Consensus 55 ~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 55 GKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 467888873 1124678899999999999887 7899999999999999999888899999998888887548998884
Q ss_pred -cccCCCcCCEEEccCCCCCccch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccch---hccchh
Q 044468 79 -GILNLVSLQHLDLSWTGITTLPI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVE---QEADRI 153 (396)
Q Consensus 79 -~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~---~~~~~~ 153 (396)
.++++..|+-|.+.-|++.-+++ .+..+++|..|.+..| ....+++..+..+.+++++.+..+.+... +|..++
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 57889999999998888885544 5888999999999887 66677775588888999988876653221 111110
Q ss_pred -----ccC--CchhhhHhh--------------hcCCCCc-EEEEEecccchhhhhhhccCCCCCcccceEEecccCCCc
Q 044468 154 -----LFG--DSEVLVEEL--------------LALKHLN-LLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSN 211 (396)
Q Consensus 154 -----~~~--~~~~~~~~l--------------~~l~~L~-~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 211 (396)
... ........+ ..++.+. .+..........+. ..++++++|++|++++. .++
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~----~cf~~L~~L~~lnlsnN-~i~ 287 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA----KCFKKLPNLRKLNLSNN-KIT 287 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH----HHHhhcccceEeccCCC-ccc
Confidence 000 000000000 0001110 00000000111111 22556677888888763 344
Q ss_pred ccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCCc--cCCCCCccEEeecc
Q 044468 212 LLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW--LVLAPRAKVIRISN 285 (396)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--l~~l~~L~~L~l~~ 285 (396)
......+.+...+++|.+..|+++.+...+.. ++..|+.|.+.+|+++.+.+ +..+.+|..|.+-.
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~--------~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQ--------GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhh--------ccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence 44445577777888888887777765543332 67888888888888888654 44567777776653
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.47 E-value=5.4e-14 Score=142.17 Aligned_cols=309 Identities=20% Similarity=0.211 Sum_probs=184.2
Q ss_pred cCCCccccEEEccccc--cccccCC--CCCCCCcEEEccCC-ccCccChHHHhcCccccEEEeecCCCCccccccccCCC
Q 044468 10 IGMWKEITRMSLMQNA--IQNLTET--PTCPHLRALFLHSN-HLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLV 84 (396)
Q Consensus 10 ~~~~~~L~~L~l~~~~--~~~l~~~--~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~ 84 (396)
-..++++++|-+..|. +..++.. ..++.|++|++++| .+.++|.+ ++.+.+||+|+++++ .+..+|..++++.
T Consensus 541 ~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t-~I~~LP~~l~~Lk 618 (889)
T KOG4658|consen 541 SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT-GISHLPSGLGNLK 618 (889)
T ss_pred CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-CccccchHHHHHH
Confidence 3446689999999986 5556553 78999999999988 56789988 999999999999999 8999999999999
Q ss_pred cCCEEEccCCC-CCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhH
Q 044468 85 SLQHLDLSWTG-ITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVE 163 (396)
Q Consensus 85 ~L~~L~l~~~~-l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 163 (396)
.|.+|++..+. +..+|.....+.+|++|.+.... .......++.+.+|++|....+..... ....
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~------------~~~e 684 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSV------------LLLE 684 (889)
T ss_pred hhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecchh------------HhHh
Confidence 99999999884 45666677789999999997753 111122244444444443333322210 1222
Q ss_pred hhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccc--hhh--hh-ccccccceeee-cccccee
Q 044468 164 ELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLS--AFS--FA-SLRHLWTLHLY-FNDFEEL 237 (396)
Q Consensus 164 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~--l~-~~~~L~~L~l~-~~~i~~l 237 (396)
.+..+..|..+....... ..........+..+.+|+.|.+.+|....... ... .. .++++..+.+. |....++
T Consensus 685 ~l~~~~~L~~~~~~l~~~-~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l 763 (889)
T KOG4658|consen 685 DLLGMTRLRSLLQSLSIE-GCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL 763 (889)
T ss_pred hhhhhHHHHHHhHhhhhc-ccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc
Confidence 233333332111111100 00101111344556668889998876643211 000 11 13344444443 4444433
Q ss_pred eeccccccccccccccccCcEeEEeCc-eeecC-CccCCCCCccEEeeccccccceeecccccccchhccccccccccCc
Q 044468 238 NIDAGEVKRIRETRGFHSLQKVYINYS-KFRHA-TWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRL 315 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 315 (396)
.... ..++|+.|.+..| .+++. +....+..++.+.+..+ ...... +......|+++
T Consensus 764 ~~~~----------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~-----------~~~~l~~l~~i 821 (889)
T KOG4658|consen 764 TWLL----------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLR-----------MLCSLGGLPQL 821 (889)
T ss_pred chhh----------ccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-ccccce-----------eeecCCCCcee
Confidence 2211 5699999999999 66663 44444555554333221 122110 00133455555
Q ss_pred ceeeccCCcccccccCCC----CCCCCcceEEeccC-cccccCCCCCC
Q 044468 316 EYLILEGLQNLKSIHSSY----LPFPRLKEICVWKC-AELKKLPLDCN 358 (396)
Q Consensus 316 ~~L~l~~~~~l~~~~~~~----~~~~~L~~L~i~~c-~~L~~lp~~~~ 358 (396)
..+.+.+-. +..+.... ..+|.+.++.+.+| +++..+|...+
T Consensus 822 ~~~~l~~~~-l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~ 868 (889)
T KOG4658|consen 822 YWLPLSFLK-LEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEW 868 (889)
T ss_pred EecccCccc-hhheehhcCcccccCccccccceeccccceeecCCccc
Confidence 555554432 44444333 56788899999997 88999998643
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=1e-14 Score=133.94 Aligned_cols=137 Identities=26% Similarity=0.252 Sum_probs=67.5
Q ss_pred CCCCCCcEEEccCCccC-----ccChHHHhcCccccEEEeecCCCCcc-------ccccccCCCcCCEEEccCCCCC-cc
Q 044468 33 PTCPHLRALFLHSNHLG-----TVSNNFFHSMASLRVLIFLYNRSLEN-------LPLGILNLVSLQHLDLSWTGIT-TL 99 (396)
Q Consensus 33 ~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~~~~-------l~~~l~~l~~L~~L~l~~~~l~-~l 99 (396)
..+.+|+.|.++++.+. .++.. +...+.+++++++++ .+.. ++..+.++++|++|++++|.+. ..
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 34445666666666552 12222 445555666666665 3321 1223445566666666666554 23
Q ss_pred chhhhcCCc---ccEEecccccCCCC----CCcchhcCC-CcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCC
Q 044468 100 PIELKYLVN---LKCLNLEYTFCLSR----IPQPVISDL-KMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHL 171 (396)
Q Consensus 100 ~~~l~~l~~---L~~L~l~~~~~~~~----~~~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 171 (396)
+..+..+.+ |++|++++|+.... +... +..+ ++|++|++.+|.+... ........+..+++|
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~---------~~~~~~~~~~~~~~L 167 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGA---------SCEALAKALRANRDL 167 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCch---------HHHHHHHHHHhCCCc
Confidence 333333333 66666666543321 1111 3444 5666666666665531 011233344555566
Q ss_pred cEEEEEeccc
Q 044468 172 NLLTVTLQIF 181 (396)
Q Consensus 172 ~~L~l~~~~~ 181 (396)
+.|++..+..
T Consensus 168 ~~L~l~~n~l 177 (319)
T cd00116 168 KELNLANNGI 177 (319)
T ss_pred CEEECcCCCC
Confidence 6666655544
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.2e-15 Score=119.86 Aligned_cols=135 Identities=31% Similarity=0.465 Sum_probs=124.6
Q ss_pred CccCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCc--cccccccCCC
Q 044468 8 PRIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE--NLPLGILNLV 84 (396)
Q Consensus 8 ~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~l~~~l~~l~ 84 (396)
|.+..+.+|+.|++.+|++..+|.. +.+++|+.|++.-|.+..+|.+ |+.++.|++||+.+| .+. .+|..+..+.
T Consensus 50 pnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltyn-nl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 50 PNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYN-NLNENSLPGNFFYMT 127 (264)
T ss_pred CcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhcccc-ccccccCCcchhHHH
Confidence 6889999999999999999999988 9999999999999999999999 999999999999999 554 6787788889
Q ss_pred cCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468 85 SLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV 146 (396)
Q Consensus 85 ~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~ 146 (396)
.|+.|.++.|.+..+|..++++++|+.|.+..| ..-++|+. ++.++.|++|++.+|.++-
T Consensus 128 tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 128 TLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred HHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccceeee
Confidence 999999999999999999999999999999997 56678988 9999999999999998875
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.45 E-value=2.7e-14 Score=131.09 Aligned_cols=187 Identities=20% Similarity=0.136 Sum_probs=125.1
Q ss_pred cCCCccccEEEcccccccc-----ccCC-CCCCCCcEEEccCCccCccC------hHHHhcCccccEEEeecCCCCc-cc
Q 044468 10 IGMWKEITRMSLMQNAIQN-----LTET-PTCPHLRALFLHSNHLGTVS------NNFFHSMASLRVLIFLYNRSLE-NL 76 (396)
Q Consensus 10 ~~~~~~L~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~-~l 76 (396)
+..+..++.++++++.++. ++.. ...+.++.++++++.+...+ ...+..+++|++|++++| .+. ..
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~ 97 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGPDG 97 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC-CCChhH
Confidence 4456679999999998743 4444 67788999999988665211 123677899999999999 443 34
Q ss_pred cccccCCC---cCCEEEccCCCCC-----ccchhhhcC-CcccEEecccccCCCC----CCcchhcCCCcccEEEeeccC
Q 044468 77 PLGILNLV---SLQHLDLSWTGIT-----TLPIELKYL-VNLKCLNLEYTFCLSR----IPQPVISDLKMLRALRMFECG 143 (396)
Q Consensus 77 ~~~l~~l~---~L~~L~l~~~~l~-----~l~~~l~~l-~~L~~L~l~~~~~~~~----~~~~~i~~l~~L~~L~l~~~~ 143 (396)
+..+..+. +|++|++++|.++ .+...+..+ ++|+.|++++|..... ++.. +..+++|++|++.+|.
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCC
Confidence 44444444 4999999999887 233345667 8999999999965532 2223 5677899999999998
Q ss_pred ccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEeccc
Q 044468 144 FKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHL 207 (396)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 207 (396)
+... ........+...++|+.|++..+.......-.....+..+++|+.|+++++
T Consensus 177 l~~~---------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 177 IGDA---------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred CchH---------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 8742 011234456666788888888776543221111122344555666666664
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.30 E-value=4.3e-14 Score=124.86 Aligned_cols=247 Identities=20% Similarity=0.217 Sum_probs=169.5
Q ss_pred CCCCCC--ccCCCccccEEEccccccccccCC--CCCCCCcEEEccC-CccCccChHHHhcCccccEEEeecCCCCccc-
Q 044468 3 GLTGAP--RIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHS-NHLGTVSNNFFHSMASLRVLIFLYNRSLENL- 76 (396)
Q Consensus 3 ~l~~~~--~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l- 76 (396)
+++.+| .|+.+++||+|++++|+|+.+... .+++.|..|-+.+ |+|.++|.+.|..+..|+.|.+..+ .+.-+
T Consensus 78 ~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir 156 (498)
T KOG4237|consen 78 QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIR 156 (498)
T ss_pred CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchh
Confidence 355565 689999999999999999997665 7888888887776 8999999999999999999999988 55433
Q ss_pred cccccCCCcCCEEEccCCCCCccch-hhhcCCcccEEecccccCCCC------------CCcchhcCCCcccEEEeeccC
Q 044468 77 PLGILNLVSLQHLDLSWTGITTLPI-ELKYLVNLKCLNLEYTFCLSR------------IPQPVISDLKMLRALRMFECG 143 (396)
Q Consensus 77 ~~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~------------~~~~~i~~l~~L~~L~l~~~~ 143 (396)
...+..+++|..|.+-.|.+..++. .+..+..++++++..|.+... .+.. ++...-..-..+.+..
T Consensus 157 ~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsgarc~~p~rl~~~R 235 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGARCVSPYRLYYKR 235 (498)
T ss_pred HHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-cccceecchHHHHHHH
Confidence 4567789999999998888887776 477788888888877643221 1111 1111111111111111
Q ss_pred ccchh-------c-cc--hhccC---CchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCC
Q 044468 144 FKVEQ-------E-AD--RILFG---DSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNS 210 (396)
Q Consensus 144 ~~~~~-------~-~~--~~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 210 (396)
+..++ + +. .+..+ ....-...+..+++|++++++++....+.+ ..+.+..+++.|.+... .+
T Consensus 236 i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~----~aFe~~a~l~eL~L~~N-~l 310 (498)
T KOG4237|consen 236 INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED----GAFEGAAELQELYLTRN-KL 310 (498)
T ss_pred hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh----hhhcchhhhhhhhcCcc-hH
Confidence 11100 0 00 01111 112334568899999999999999876654 44566666999999763 33
Q ss_pred cccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCc
Q 044468 211 NLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYS 264 (396)
Q Consensus 211 ~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 264 (396)
....-..+.++..|+.|+++.|+|+.+...... ....|.+|.+-.|
T Consensus 311 ~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~--------~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 311 EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ--------TLFSLSTLNLLSN 356 (498)
T ss_pred HHHHHHhhhccccceeeeecCCeeEEEeccccc--------ccceeeeeehccC
Confidence 444434578899999999999999987664432 5677888888766
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.25 E-value=5.6e-12 Score=103.01 Aligned_cols=131 Identities=24% Similarity=0.270 Sum_probs=37.9
Q ss_pred CCCCccCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccc-cC
Q 044468 5 TGAPRIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGI-LN 82 (396)
Q Consensus 5 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l-~~ 82 (396)
++++.+.+..++++|+++++.++.+... ..+.+|+.|++++|.+..+.. +..+++|+.|++++| .++.++..+ ..
T Consensus 10 ~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~ 86 (175)
T PF14580_consen 10 EQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKN 86 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH
T ss_pred ccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHh
Confidence 3445555555677777777777776655 456777777777777766643 666777777777777 666554433 24
Q ss_pred CCcCCEEEccCCCCCccc--hhhhcCCcccEEecccccCCCCCC--cchhcCCCcccEEE
Q 044468 83 LVSLQHLDLSWTGITTLP--IELKYLVNLKCLNLEYTFCLSRIP--QPVISDLKMLRALR 138 (396)
Q Consensus 83 l~~L~~L~l~~~~l~~l~--~~l~~l~~L~~L~l~~~~~~~~~~--~~~i~~l~~L~~L~ 138 (396)
+++|++|++++|.+..+. ..+..+++|++|++.+|+....-. .-++..+|+|+.|+
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 677777777777665332 235566666666666664332211 12234455555554
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.23 E-value=3.2e-13 Score=120.30 Aligned_cols=296 Identities=17% Similarity=0.135 Sum_probs=185.9
Q ss_pred CCCcEEEccCCcc-C-ccChHHHhcCccccEEEeecCCCCcccc--ccccCCCcCCEEEccCC-CCCc--cchhhhcCCc
Q 044468 36 PHLRALFLHSNHL-G-TVSNNFFHSMASLRVLIFLYNRSLENLP--LGILNLVSLQHLDLSWT-GITT--LPIELKYLVN 108 (396)
Q Consensus 36 ~~L~~L~l~~~~~-~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~--~~l~~l~~L~~L~l~~~-~l~~--l~~~l~~l~~ 108 (396)
.-|+.|.+.++.- . .-...+...+++++.|.+.+|..++... ..-..+.+|+++++..| .++. +......+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3566777777732 1 1112335677888888888875554221 11235777888888776 5552 2223456788
Q ss_pred ccEEecccccCCCCCC-cchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhh
Q 044468 109 LKCLNLEYTFCLSRIP-QPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRL 187 (396)
Q Consensus 109 L~~L~l~~~~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 187 (396)
|+++++++|..+..-. +....++..++.+...+|.-... +.....-+....+.++++.... .+++.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l-----------e~l~~~~~~~~~i~~lnl~~c~--~lTD~ 284 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL-----------EALLKAAAYCLEILKLNLQHCN--QLTDE 284 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH-----------HHHHHHhccChHhhccchhhhc--cccch
Confidence 8888888875443311 12245566677776666643332 1122222222333333322221 11111
Q ss_pred hhccCCCCCcccceEEecccCCCcccchhhhh-ccccccceeee-ccccceeeeccccccccccccccccCcEeEEeCc-
Q 044468 188 LNYCNSSRSINTQSLCLRHLNNSNLLSAFSFA-SLRHLWTLHLY-FNDFEELNIDAGEVKRIRETRGFHSLQKVYINYS- 264 (396)
Q Consensus 188 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~-~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~- 264 (396)
.....-..++.|+.+..+++...++..+.++. ++++|+.|.++ |.++.+.++...+. .++.|+.+++.+|
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r-------n~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR-------NCPHLERLDLEECG 357 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc-------CChhhhhhcccccc
Confidence 10111234666999999999887777655555 68999999999 88898888877666 8899999999999
Q ss_pred eeec--CCc-cCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccC-CCCCCCCcc
Q 044468 265 KFRH--ATW-LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHS-SYLPFPRLK 340 (396)
Q Consensus 265 ~l~~--l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~ 340 (396)
..++ +.. ..++|.|+.|.++.|+.+++... . ...........|+.+.+.+|+.+.+-.. ....+++|+
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi-~-------~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le 429 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGI-R-------HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE 429 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhhhhhh-h-------hhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence 5555 333 33599999999999987665511 1 1122556788999999999998765433 345688999
Q ss_pred eEEeccCcccccCCCCCCC
Q 044468 341 EICVWKCAELKKLPLDCNQ 359 (396)
Q Consensus 341 ~L~i~~c~~L~~lp~~~~~ 359 (396)
.+++.+|..+.+-|...+.
T Consensus 430 ri~l~~~q~vtk~~i~~~~ 448 (483)
T KOG4341|consen 430 RIELIDCQDVTKEAISRFA 448 (483)
T ss_pred eeeeechhhhhhhhhHHHH
Confidence 9999999988886665443
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.13 E-value=1.7e-12 Score=115.72 Aligned_cols=266 Identities=18% Similarity=0.142 Sum_probs=180.2
Q ss_pred HhcC-ccccEEEeecCCCCcccc--ccccCCCcCCEEEccCC-CCC--ccchhhhcCCcccEEecccccCCCCCC-cchh
Q 044468 56 FHSM-ASLRVLIFLYNRSLENLP--LGILNLVSLQHLDLSWT-GIT--TLPIELKYLVNLKCLNLEYTFCLSRIP-QPVI 128 (396)
Q Consensus 56 ~~~l-~~L~~L~l~~~~~~~~l~--~~l~~l~~L~~L~l~~~-~l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~-~~~i 128 (396)
+.++ ..|+.|.++++..+..-+ ....++++.++|++.+| +++ .+-..-..+++|+++++..|....... +...
T Consensus 133 ~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 133 ISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred hhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 3444 368999999996655333 34458999999999988 565 233334679999999999875544432 3345
Q ss_pred cCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccC
Q 044468 129 SDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLN 208 (396)
Q Consensus 129 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 208 (396)
..+++|.++++++|....- . ..-.-..+.+.++.+...+........+... -+.+..+..+++..|.
T Consensus 213 ~gC~kL~~lNlSwc~qi~~--------~---gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~--~~~~~~i~~lnl~~c~ 279 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISG--------N---GVQALQRGCKELEKLSLKGCLELELEALLKA--AAYCLEILKLNLQHCN 279 (483)
T ss_pred HhhhhHHHhhhccCchhhc--------C---cchHHhccchhhhhhhhcccccccHHHHHHH--hccChHhhccchhhhc
Confidence 6799999999999865431 1 1122333444455554443332222222211 1234446777777887
Q ss_pred CCcccchhhhh-ccccccceeee-ccccceeeeccccccccccccccccCcEeEEeCc-eeecCC--ccCC-CCCccEEe
Q 044468 209 NSNLLSAFSFA-SLRHLWTLHLY-FNDFEELNIDAGEVKRIRETRGFHSLQKVYINYS-KFRHAT--WLVL-APRAKVIR 282 (396)
Q Consensus 209 ~~~~~~~~~l~-~~~~L~~L~l~-~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~--~l~~-l~~L~~L~ 282 (396)
.+++.+.-.+. .+..|+.|..+ ++.+.+..+...+. ++++|+.+.+.+| ++++.. .++. .+.|+.++
T Consensus 280 ~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~-------~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 280 QLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ-------HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD 352 (483)
T ss_pred cccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc-------CCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence 77777644333 57889999999 77777766655544 8899999999999 888853 3544 89999999
Q ss_pred eccccccceeecccccccchhccccccccccCcceeeccCCcccccc-----cCCCCCCCCcceEEeccCccccc
Q 044468 283 ISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSI-----HSSYLPFPRLKEICVWKCAELKK 352 (396)
Q Consensus 283 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~~L~~L~i~~c~~L~~ 352 (396)
+..|....+- .+......++.|+.+.+++|.....- .....+...|+.+++.+||.+.+
T Consensus 353 ~e~~~~~~d~-----------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 353 LEECGLITDG-----------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred ccccceehhh-----------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence 9887653322 12235678999999999999765543 33456688999999999998876
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=1.3e-10 Score=95.02 Aligned_cols=140 Identities=26% Similarity=0.282 Sum_probs=51.2
Q ss_pred cccccccCCCCCCCCcEEEccCCccCccChHHHh-cCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchh
Q 044468 24 NAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFH-SMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIE 102 (396)
Q Consensus 24 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~ 102 (396)
+.+...+...+...++.|++.++.|..+.. ++ .+.+|+.|++++| .++.++ .+..++.|++|++++|.++.+...
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp -----------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHH
T ss_pred cccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccc
Confidence 344445555667788999999998887753 44 6789999999999 777774 477889999999999999988765
Q ss_pred h-hcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEE
Q 044468 103 L-KYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVT 177 (396)
Q Consensus 103 l-~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 177 (396)
+ ..+++|++|++++|....--.-..+..+++|+.|++.+|+++.. ..--...+..+|.|+.|+-.
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~----------~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK----------KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS----------TTHHHHHHHH-TT-SEETTE
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch----------hhHHHHHHHHcChhheeCCE
Confidence 5 46899999999988443321222367889999999999887652 11124455667777766633
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.5e-11 Score=110.48 Aligned_cols=219 Identities=18% Similarity=0.122 Sum_probs=146.1
Q ss_pred CCCCC-CccCCCccccEEEccccccccccC--C-CCCCCCcEEEccCCccCcc--ChHHHhcCccccEEEeecCCCCc-c
Q 044468 3 GLTGA-PRIGMWKEITRMSLMQNAIQNLTE--T-PTCPHLRALFLHSNHLGTV--SNNFFHSMASLRVLIFLYNRSLE-N 75 (396)
Q Consensus 3 ~l~~~-~~~~~~~~L~~L~l~~~~~~~l~~--~-~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~-~ 75 (396)
|+.++ ..-.++++|+.+.+.++.+...+. . ..|++++.|++++|-+..+ ...+...+++|+.|+++.| .+. .
T Consensus 109 GfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~ 187 (505)
T KOG3207|consen 109 GFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNF 187 (505)
T ss_pred cHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCC
Confidence 44444 234568889999999998877553 3 7899999999999965322 2344788999999999999 443 2
Q ss_pred cccc-ccCCCcCCEEEccCCCCC--ccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccch
Q 044468 76 LPLG-ILNLVSLQHLDLSWTGIT--TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADR 152 (396)
Q Consensus 76 l~~~-l~~l~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 152 (396)
..+. -..+.+|+.|.++.|+++ ++...+..+++|+.|++..|.....-... ..-+..|++|++++|++...
T Consensus 188 ~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~----- 261 (505)
T KOG3207|consen 188 ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDF----- 261 (505)
T ss_pred ccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccc-----
Confidence 2221 125789999999999888 55556778899999999987422211111 33467789999999988764
Q ss_pred hccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhh--ccCCCCCcccceEEecccCCCcccchhhhhccccccceeee
Q 044468 153 ILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLN--YCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLY 230 (396)
Q Consensus 153 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 230 (396)
+.......++.|+.|.++.++..++..... .......+.|+.|++..+.......+..+..+++|+.|.+.
T Consensus 262 -------~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 262 -------DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred -------ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 455677788888888888777765433221 12234455677777776544333333445556667777666
Q ss_pred ccccc
Q 044468 231 FNDFE 235 (396)
Q Consensus 231 ~~~i~ 235 (396)
++.+.
T Consensus 335 ~n~ln 339 (505)
T KOG3207|consen 335 LNYLN 339 (505)
T ss_pred ccccc
Confidence 55543
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.4e-11 Score=108.19 Aligned_cols=212 Identities=19% Similarity=0.144 Sum_probs=128.6
Q ss_pred HhcCccccEEEeecCCCCccccc--cccCCCcCCEEEccCCCCC---ccchhhhcCCcccEEecccccCCCCCCcchhcC
Q 044468 56 FHSMASLRVLIFLYNRSLENLPL--GILNLVSLQHLDLSWTGIT---TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISD 130 (396)
Q Consensus 56 ~~~l~~L~~L~l~~~~~~~~l~~--~l~~l~~L~~L~l~~~~l~---~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~ 130 (396)
-.++.+|+...+.++ .+...+. -...+++++.||++.|-+. .+-.....+++|+.|+++.|++........-..
T Consensus 117 Qsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 455666777777766 5554432 3446777777777776544 333445677777777777775444433332335
Q ss_pred CCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCC
Q 044468 131 LKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNS 210 (396)
Q Consensus 131 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 210 (396)
++.|+.|.+..|+++.- .....+...|.|+.|.+..+...... .........|+.|++++...+
T Consensus 196 l~~lK~L~l~~CGls~k------------~V~~~~~~fPsl~~L~L~~N~~~~~~----~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWK------------DVQWILLTFPSLEVLYLEANEIILIK----ATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred hhhhheEEeccCCCCHH------------HHHHHHHhCCcHHHhhhhccccccee----cchhhhhhHHhhccccCCccc
Confidence 67788888888877753 45566667778887877777421111 111222344788888876665
Q ss_pred cccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCCc---cCCCCCccEEeeccc
Q 044468 211 NLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW---LVLAPRAKVIRISNC 286 (396)
Q Consensus 211 ~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~---l~~l~~L~~L~l~~~ 286 (396)
..........++.|..|+++.+.+.++..-..+. ...+..|++|++|.+..|.+.+.+. +..+++|+.|.+...
T Consensus 260 ~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s--~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 260 DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES--LDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccccccccccccchhhhhccccCcchhcCCCccc--hhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 5554445667788888888877776655411100 0111278899999998886555444 444677777776543
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.99 E-value=1.1e-10 Score=102.08 Aligned_cols=97 Identities=15% Similarity=-0.017 Sum_probs=43.4
Q ss_pred CCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCC
Q 044468 130 DLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNN 209 (396)
Q Consensus 130 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 209 (396)
+-+.||++...+|.+... +-......+...+.|+.+.+..+++..-....-...+..|++|+.|++.++..
T Consensus 155 ~~~~Lrv~i~~rNrlen~---------ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENG---------GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred CCcceEEEEeeccccccc---------cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh
Confidence 345566666555554431 11123344455556666665555543222212223345556666666655332
Q ss_pred Ccccch---hhhhccccccceeeeccccc
Q 044468 210 SNLLSA---FSFASLRHLWTLHLYFNDFE 235 (396)
Q Consensus 210 ~~~~~~---~~l~~~~~L~~L~l~~~~i~ 235 (396)
...... ..++.+++|+.|++....++
T Consensus 226 t~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 226 TLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred hhHHHHHHHHHhcccchheeecccccccc
Confidence 111111 12444455555555533333
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=6.6e-11 Score=109.66 Aligned_cols=191 Identities=26% Similarity=0.283 Sum_probs=135.9
Q ss_pred EEEccccccccccCC-C--CCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC
Q 044468 18 RMSLMQNAIQNLTET-P--TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT 94 (396)
Q Consensus 18 ~L~l~~~~~~~l~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~ 94 (396)
+|.|++-.++.+|.. . .+..-...+++.|.+.++|.. +..|..|+.+.++.| .+..+|..++++..|++++++.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc
Confidence 355566666666555 2 333344578888988899888 788889999999998 88888999999999999999999
Q ss_pred CCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEE
Q 044468 95 GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLL 174 (396)
Q Consensus 95 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 174 (396)
.++.+|..++.++ |+.|-+++| ....+|.. ++....|..|+.+.|.+.. ....+.++..|+.|
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~-ig~~~tl~~ld~s~nei~s--------------lpsql~~l~slr~l 194 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKNEIQS--------------LPSQLGYLTSLRDL 194 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEecC-ccccCCcc-cccchhHHHhhhhhhhhhh--------------chHHhhhHHHHHHH
Confidence 9999999888876 888888886 77888888 8888899999999888765 67777788888777
Q ss_pred EEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccc
Q 044468 175 TVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFE 235 (396)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 235 (396)
.+..+....++... ..++ |..|+++. +.+....+ .+..|.+|++|-+.+|.++
T Consensus 195 ~vrRn~l~~lp~El-----~~Lp-Li~lDfSc-Nkis~iPv-~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 195 NVRRNHLEDLPEEL-----CSLP-LIRLDFSC-NKISYLPV-DFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHhhhhhhhCCHHH-----hCCc-eeeeeccc-Cceeecch-hhhhhhhheeeeeccCCCC
Confidence 76666665544321 1111 55555543 22222221 2455666666666655554
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=4.7e-09 Score=99.32 Aligned_cols=192 Identities=27% Similarity=0.325 Sum_probs=109.2
Q ss_pred EEEcccccccc-ccCCCCCCCCcEEEccCCccCccChHHHhcCc-cccEEEeecCCCCccccccccCCCcCCEEEccCCC
Q 044468 18 RMSLMQNAIQN-LTETPTCPHLRALFLHSNHLGTVSNNFFHSMA-SLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTG 95 (396)
Q Consensus 18 ~L~l~~~~~~~-l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 95 (396)
.+....+.+.. .......+.++.|.+.++.+.+++.. ...+. +|+.|+++.+ .+..+|..++++++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCch
Confidence 35555555522 22224456677777777777666654 44443 6777777777 666665556677777777777777
Q ss_pred CCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEE
Q 044468 96 ITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLT 175 (396)
Q Consensus 96 l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 175 (396)
++.+|......++|+.|++++| ....+|.. ++.+..|+++.+.++.... .+..+.++..+..+.
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N~~~~--------------~~~~~~~~~~l~~l~ 238 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGN-KISDLPPE-IELLSALEELDLSNNSIIE--------------LLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCC-ccccCchh-hhhhhhhhhhhhcCCccee--------------cchhhhhcccccccc
Confidence 7777666556677777777776 55555553 4455557777777664322 344555555555555
Q ss_pred EEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccc
Q 044468 176 VTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFE 235 (396)
Q Consensus 176 l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 235 (396)
+..+....+. ..+.+.+.++.|++.++....... +....+++.|+++.+.+.
T Consensus 239 l~~n~~~~~~-----~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 239 LSNNKLEDLP-----ESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cCCceeeecc-----chhccccccceecccccccccccc---ccccCccCEEeccCcccc
Confidence 4444443321 223334446666666543222222 555666777777644443
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.6e-10 Score=96.91 Aligned_cols=184 Identities=15% Similarity=0.082 Sum_probs=100.5
Q ss_pred cccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhh
Q 044468 108 NLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRL 187 (396)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 187 (396)
.|+++|+++......--..++..|.+|+.|.+.+..+.. .....++.-.+|+.+++++...-. ..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD-------------~I~~~iAkN~~L~~lnlsm~sG~t--~n 250 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD-------------PIVNTIAKNSNLVRLNLSMCSGFT--EN 250 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc-------------HHHHHHhccccceeeccccccccc--hh
Confidence 466666666433222112334556666777766666654 356666666667766666543311 11
Q ss_pred hhccCCCCCcccceEEecccCCCcccchhhhh-ccccccceeee-c-cccceeeeccccccccccccccccCcEeEEeCc
Q 044468 188 LNYCNSSRSINTQSLCLRHLNNSNLLSAFSFA-SLRHLWTLHLY-F-NDFEELNIDAGEVKRIRETRGFHSLQKVYINYS 264 (396)
Q Consensus 188 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~-~-~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 264 (396)
....-+.+|+.|+.|+++||.-.+......+. --++|..|+++ + .++.+-.+.... ..||+|.+|+++.|
T Consensus 251 ~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~-------~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 251 ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV-------RRCPNLVHLDLSDS 323 (419)
T ss_pred HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH-------HhCCceeeeccccc
Confidence 11122445666777777777543332111112 12567777777 1 111111111111 16788888888888
Q ss_pred -eeec--CCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcc
Q 044468 265 -KFRH--ATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQN 325 (396)
Q Consensus 265 -~l~~--l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 325 (396)
.+++ ...+.+++.|++|.++.|+.+ +.+.+. .....|.|.+|++.||-.
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i---~p~~~~---------~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYDI---IPETLL---------ELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcCC---ChHHee---------eeccCcceEEEEeccccC
Confidence 6666 233566788888888888753 221111 345678888888888743
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=9.4e-10 Score=94.52 Aligned_cols=128 Identities=23% Similarity=0.175 Sum_probs=71.5
Q ss_pred CCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEeccc
Q 044468 37 HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEY 116 (396)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~ 116 (396)
.|+.+++++|.|..+..+ ++-.|.+++|++++| .+..+.. +..+++|++||+++|.++.+..+-.++-+.+.|.+++
T Consensus 285 ~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDES-VKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccccchhhhhhh-hhhccceeEEecccc-ceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 455566666666555555 555566666666666 4443322 4555666666666666555544444555666666666
Q ss_pred ccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccc
Q 044468 117 TFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFG 182 (396)
Q Consensus 117 ~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 182 (396)
| .+..+.. ++++-+|..|++.+|++... +....+++++.|+.+.+.++...
T Consensus 362 N-~iE~LSG--L~KLYSLvnLDl~~N~Ie~l------------deV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 362 N-KIETLSG--LRKLYSLVNLDLSSNQIEEL------------DEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred h-hHhhhhh--hHhhhhheeccccccchhhH------------HHhcccccccHHHHHhhcCCCcc
Confidence 5 3333322 55555666666666665543 44555566666666665555543
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.77 E-value=9.8e-10 Score=102.05 Aligned_cols=134 Identities=22% Similarity=0.301 Sum_probs=103.7
Q ss_pred ccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCE
Q 044468 9 RIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQH 88 (396)
Q Consensus 9 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~ 88 (396)
.+.++..|+.++|+.|++..+|...+.--|++|.+++|++..+|.+ ++...+|..||.+.| .+..+|+.++++.+|+.
T Consensus 116 ~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhchHHhhhHHHHHH
Confidence 4666777788888888888877774444678888888888888777 677778888888888 77777777888888888
Q ss_pred EEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccch
Q 044468 89 LDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVE 147 (396)
Q Consensus 89 L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~ 147 (396)
|.++.|++..+|..+..+ .|..||+++| .+..+|.. |.+|+.|++|.+.+|.+...
T Consensus 194 l~vrRn~l~~lp~El~~L-pLi~lDfScN-kis~iPv~-fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 194 LNVRRNHLEDLPEELCSL-PLIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred HHHhhhhhhhCCHHHhCC-ceeeeecccC-ceeecchh-hhhhhhheeeeeccCCCCCC
Confidence 888888888888877744 4778888776 67777877 88888888888888877763
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.74 E-value=1.1e-08 Score=96.85 Aligned_cols=193 Identities=27% Similarity=0.292 Sum_probs=141.1
Q ss_pred EEEccCCcc-CccChHHHhcCccccEEEeecCCCCccccccccCCC-cCCEEEccCCCCCccchhhhcCCcccEEecccc
Q 044468 40 ALFLHSNHL-GTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLV-SLQHLDLSWTGITTLPIELKYLVNLKCLNLEYT 117 (396)
Q Consensus 40 ~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~-~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~ 117 (396)
.+....+.+ ..+.. +..+..++.|++.++ .+..++...+.+. +|+.|+++++.+..+|..++.+++|+.|++..|
T Consensus 97 ~l~~~~~~~~~~~~~--~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISE--LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchh--hhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence 577777776 34333 677789999999999 8889988788775 999999999999999888999999999999998
Q ss_pred cCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecc-cchhhhhhhccCCCCC
Q 044468 118 FCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQI-FGALQRLLNYCNSSRS 196 (396)
Q Consensus 118 ~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~~ 196 (396)
....++.. .+..++|+.|.++++.+... .........|+++.+..+. ..... .+.+.
T Consensus 174 -~l~~l~~~-~~~~~~L~~L~ls~N~i~~l--------------~~~~~~~~~L~~l~~~~N~~~~~~~------~~~~~ 231 (394)
T COG4886 174 -DLSDLPKL-LSNLSNLNNLDLSGNKISDL--------------PPEIELLSALEELDLSNNSIIELLS------SLSNL 231 (394)
T ss_pred -hhhhhhhh-hhhhhhhhheeccCCccccC--------------chhhhhhhhhhhhhhcCCcceecch------hhhhc
Confidence 56666664 45889999999999988763 2222445558888888774 32222 23344
Q ss_pred cccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecC
Q 044468 197 INTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHA 269 (396)
Q Consensus 197 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l 269 (396)
.++..+.+.+...... ...+..++.++.|+++++.+.++.. .+ ...+++.|++.++.+...
T Consensus 232 ~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~~i~~--~~--------~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 232 KNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQISSISS--LG--------SLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccccccCCceeeec--cchhccccccceecccccccccccc--cc--------ccCccCEEeccCcccccc
Confidence 4455565544322221 1236677889999999999887764 11 689999999999865554
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=1.3e-09 Score=93.76 Aligned_cols=133 Identities=28% Similarity=0.356 Sum_probs=110.9
Q ss_pred cCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCE
Q 044468 10 IGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQH 88 (396)
Q Consensus 10 ~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~ 88 (396)
+..|..|+++++++|.++.+..+ .-.|.++.|++++|.+..+.. +..+++|..||+++| .+..+..+=.++-+.++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEee
Confidence 45678899999999999998777 789999999999999987755 789999999999999 77766554457788999
Q ss_pred EEccCCCCCccchhhhcCCcccEEecccccCCCCCC-cchhcCCCcccEEEeeccCccch
Q 044468 89 LDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIP-QPVISDLKMLRALRMFECGFKVE 147 (396)
Q Consensus 89 L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~~ 147 (396)
|.++.|.+..+. +++++.+|..||+.+|+. ..+. ...|+++|-|+++.+.+|.+...
T Consensus 357 L~La~N~iE~LS-GL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 357 LKLAQNKIETLS-GLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eehhhhhHhhhh-hhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCCcccc
Confidence 999999888774 688999999999999844 3332 23389999999999999987663
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=6.3e-10 Score=95.43 Aligned_cols=183 Identities=21% Similarity=0.101 Sum_probs=127.6
Q ss_pred CcCCEEEccCCCCC--ccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhh
Q 044468 84 VSLQHLDLSWTGIT--TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVL 161 (396)
Q Consensus 84 ~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 161 (396)
..|+++|+++..++ .+-..+..+.+|+.|.+.+....+.+... |.+-.+|+.|+++.|.--.. .+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~-----------n~~ 252 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTE-----------NAL 252 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccch-----------hHH
Confidence 35999999998887 55556788999999999998666666665 77888999999998743221 133
Q ss_pred hHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcc-cchhhh-hccccccceeee-ccccceee
Q 044468 162 VEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNL-LSAFSF-ASLRHLWTLHLY-FNDFEELN 238 (396)
Q Consensus 162 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l-~~~~~L~~L~l~-~~~i~~l~ 238 (396)
-..+.+++.|+.|.++........--......+ .+|+.|+++++...-. ..++.+ ..||+|..|+++ +..+++-.
T Consensus 253 ~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~ 330 (419)
T KOG2120|consen 253 QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC 330 (419)
T ss_pred HHHHHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH
Confidence 446678888888888877654322111112222 3388999988754322 233444 469999999999 77776633
Q ss_pred eccccccccccccccccCcEeEEeCc-eeec--CCccCCCCCccEEeeccccc
Q 044468 239 IDAGEVKRIRETRGFHSLQKVYINYS-KFRH--ATWLVLAPRAKVIRISNCQR 288 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~--l~~l~~l~~L~~L~l~~~~~ 288 (396)
+.... .|+.|++|.++.| .+.. +-.+...|+|.+|++.+|-.
T Consensus 331 ~~~~~--------kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 331 FQEFF--------KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHHHH--------hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 32222 7899999999999 5443 44567789999999998753
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.57 E-value=1.2e-08 Score=89.59 Aligned_cols=214 Identities=16% Similarity=0.130 Sum_probs=116.4
Q ss_pred cCCCccccEEEccccc---c--------ccccCC-CCCCCCcEEEccCCccC-c-cC--hHHHhcCccccEEEeecCCCC
Q 044468 10 IGMWKEITRMSLMQNA---I--------QNLTET-PTCPHLRALFLHSNHLG-T-VS--NNFFHSMASLRVLIFLYNRSL 73 (396)
Q Consensus 10 ~~~~~~L~~L~l~~~~---~--------~~l~~~-~~~~~L~~L~l~~~~~~-~-~~--~~~~~~l~~L~~L~l~~~~~~ 73 (396)
+.+.+.||..++++-- . ..+... ..+++|++|++++|.++ . ++ ...+.++..|+.|.+.+| -+
T Consensus 54 L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Gl 132 (382)
T KOG1909|consen 54 LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GL 132 (382)
T ss_pred HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CC
Confidence 3445567777776531 1 112222 56677777777777553 1 11 123566777777777777 44
Q ss_pred ccccc--------------cccCCCcCCEEEccCCCCCcc-----chhhhcCCcccEEecccccCCCC----CCcchhcC
Q 044468 74 ENLPL--------------GILNLVSLQHLDLSWTGITTL-----PIELKYLVNLKCLNLEYTFCLSR----IPQPVISD 130 (396)
Q Consensus 74 ~~l~~--------------~l~~l~~L~~L~l~~~~l~~l-----~~~l~~l~~L~~L~l~~~~~~~~----~~~~~i~~ 130 (396)
+.... -++.-+.|+++...+|.+..- ...+...+.|+.+.+..|..-.. +..+ +..
T Consensus 133 g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ea-l~~ 211 (382)
T KOG1909|consen 133 GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEA-LEH 211 (382)
T ss_pred ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHH-HHh
Confidence 42211 123456677777777766532 23355667777777776633221 1122 556
Q ss_pred CCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCC-CCCcccceEEecccCC
Q 044468 131 LKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNS-SRSINTQSLCLRHLNN 209 (396)
Q Consensus 131 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~ 209 (396)
+++|++|++..|.++.. +.......++.+++|+.+.+.++....-........+ ...+.|+.|.+.++..
T Consensus 212 ~~~LevLdl~DNtft~e---------gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 212 CPHLEVLDLRDNTFTLE---------GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred CCcceeeecccchhhhH---------HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 77777777777766652 2233455666777777777665554321111111111 1245577777776543
Q ss_pred Ccccch---hhhhccccccceeeecccc
Q 044468 210 SNLLSA---FSFASLRHLWTLHLYFNDF 234 (396)
Q Consensus 210 ~~~~~~---~~l~~~~~L~~L~l~~~~i 234 (396)
...... ..+...|.|+.|++..|.+
T Consensus 283 t~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 283 TRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 222211 1234467788888876665
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.57 E-value=5.6e-08 Score=65.27 Aligned_cols=57 Identities=32% Similarity=0.423 Sum_probs=25.9
Q ss_pred CCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCC
Q 044468 37 HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWT 94 (396)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~ 94 (396)
+|++|++++|.+..++.+.|..+++|++|++++| .+..++ ..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444444444443444444455554444 333332 23344444444444444
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.52 E-value=3.4e-07 Score=91.17 Aligned_cols=103 Identities=23% Similarity=0.341 Sum_probs=57.9
Q ss_pred CcEEEccCCccC-ccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCC-ccchhhhcCCcccEEecc
Q 044468 38 LRALFLHSNHLG-TVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGIT-TLPIELKYLVNLKCLNLE 115 (396)
Q Consensus 38 L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~ 115 (396)
++.|+++++.+. .+|.. +..+++|+.|++++|...+.+|..++.+++|+.|++++|.++ .+|..++++++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 455566666553 44444 566666666666666333355555666666666666666555 555556666666666666
Q ss_pred cccCCCCCCcchhcC-CCcccEEEeecc
Q 044468 116 YTFCLSRIPQPVISD-LKMLRALRMFEC 142 (396)
Q Consensus 116 ~~~~~~~~~~~~i~~-l~~L~~L~l~~~ 142 (396)
+|.+.+.+|.. ++. ..++..+++.+|
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCC
Confidence 66555555554 333 234445555544
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.50 E-value=1.4e-07 Score=63.36 Aligned_cols=57 Identities=23% Similarity=0.410 Sum_probs=53.0
Q ss_pred ccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecC
Q 044468 14 KEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYN 70 (396)
Q Consensus 14 ~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 70 (396)
++|++|++++|.+..++.. ..+++|++|++++|.+..+++..|..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 5789999999999998865 88999999999999999998887999999999999998
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.45 E-value=6.6e-07 Score=89.11 Aligned_cols=109 Identities=23% Similarity=0.337 Sum_probs=91.2
Q ss_pred cccEEEcccccccc-ccCC-CCCCCCcEEEccCCccC-ccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEc
Q 044468 15 EITRMSLMQNAIQN-LTET-PTCPHLRALFLHSNHLG-TVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDL 91 (396)
Q Consensus 15 ~L~~L~l~~~~~~~-l~~~-~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l 91 (396)
.++.|+++++.+.. ++.. ..+++|+.|++++|.+. .+|.. +..+++|++|++++|...+.+|..++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 37889999999987 6666 88999999999999985 77777 899999999999999555588999999999999999
Q ss_pred cCCCCC-ccchhhhcC-CcccEEecccccCCCCCC
Q 044468 92 SWTGIT-TLPIELKYL-VNLKCLNLEYTFCLSRIP 124 (396)
Q Consensus 92 ~~~~l~-~l~~~l~~l-~~L~~L~l~~~~~~~~~~ 124 (396)
++|.++ .+|..+... .++..+++.+|......|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999887 888887653 567788888875444433
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.40 E-value=4.3e-08 Score=93.10 Aligned_cols=216 Identities=25% Similarity=0.217 Sum_probs=114.6
Q ss_pred CCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEec
Q 044468 35 CPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNL 114 (396)
Q Consensus 35 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l 114 (396)
+..++.+.+..+.+..+... +..+.+|++|++..+ .+..+...+..+++|++|++++|.|+.+. .+..+..|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcc-cccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence 44555555666655543222 566777777777777 66555443566777777777777777654 3556666777777
Q ss_pred ccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCC
Q 044468 115 EYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSS 194 (396)
Q Consensus 115 ~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 194 (396)
.+| .+..+.. +..+++|+.+++.+|.+... .... +..+..++.+.+.++.......+.....
T Consensus 148 ~~N-~i~~~~~--~~~l~~L~~l~l~~n~i~~i------------e~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~-- 209 (414)
T KOG0531|consen 148 SGN-LISDISG--LESLKSLKLLDLSYNRIVDI------------ENDE-LSELISLEELDLGGNSIREIEGLDLLKK-- 209 (414)
T ss_pred ccC-cchhccC--CccchhhhcccCCcchhhhh------------hhhh-hhhccchHHHhccCCchhcccchHHHHH--
Confidence 776 4444433 55567777777777766543 0101 4555566666666665544433322111
Q ss_pred CCcccceEEecccCCCcccchhhhhccc--cccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCCcc
Q 044468 195 RSINTQSLCLRHLNNSNLLSAFSFASLR--HLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWL 272 (396)
Q Consensus 195 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~l 272 (396)
+..+.+....-....+ +..+. +|+.+++..+.+....-.. ..+.++..|++..+.+..+..+
T Consensus 210 ----l~~~~l~~n~i~~~~~---l~~~~~~~L~~l~l~~n~i~~~~~~~---------~~~~~l~~l~~~~n~~~~~~~~ 273 (414)
T KOG0531|consen 210 ----LVLLSLLDNKISKLEG---LNELVMLHLRELYLSGNRISRSPEGL---------ENLKNLPVLDLSSNRISNLEGL 273 (414)
T ss_pred ----HHHhhcccccceeccC---cccchhHHHHHHhcccCccccccccc---------cccccccccchhhccccccccc
Confidence 2222222211111111 22222 2666666655555431000 1466667777666655555555
Q ss_pred CCCCCccEEeecccc
Q 044468 273 VLAPRAKVIRISNCQ 287 (396)
Q Consensus 273 ~~l~~L~~L~l~~~~ 287 (396)
...+.+..+......
T Consensus 274 ~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 274 ERLPKLSELWLNDNK 288 (414)
T ss_pred cccchHHHhccCcch
Confidence 555555555554443
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=9e-09 Score=98.41 Aligned_cols=184 Identities=21% Similarity=0.240 Sum_probs=107.6
Q ss_pred CCCCCCccCCCccccEEEccccccccccCC-CCCCCCcEEEccCC--ccCccChHHHhcC------ccccEEEeecCCCC
Q 044468 3 GLTGAPRIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSN--HLGTVSNNFFHSM------ASLRVLIFLYNRSL 73 (396)
Q Consensus 3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~--~~~~~~~~~~~~l------~~L~~L~l~~~~~~ 73 (396)
+.++.-+|..++.||+|.+.++++...... .--..|+.|.+.+. .+.++-..-.+.. ..|.+.++++| .+
T Consensus 98 ~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L 176 (1096)
T KOG1859|consen 98 DPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN-RL 176 (1096)
T ss_pred CCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh-hH
Confidence 334433566778888888888877653333 22234444444332 1111100000111 24666677777 66
Q ss_pred ccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchh
Q 044468 74 ENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRI 153 (396)
Q Consensus 74 ~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 153 (396)
..+.+++.-++.|++|+|++|+++++. .+..+++|++||++.| .+..+|.-.-..+ .|+.|.+.+|.++.
T Consensus 177 ~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN~l~t------- 246 (1096)
T KOG1859|consen 177 VLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNNALTT------- 246 (1096)
T ss_pred HhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeecccHHHh-------
Confidence 666666777788888888888777665 5677788888888876 4555554111123 38888888876653
Q ss_pred ccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccC
Q 044468 154 LFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLN 208 (396)
Q Consensus 154 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 208 (396)
+..+.+++.|+.|+++.|-+.....+.... .+..|+.|++.++.
T Consensus 247 --------L~gie~LksL~~LDlsyNll~~hseL~pLw---sLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 247 --------LRGIENLKSLYGLDLSYNLLSEHSELEPLW---SLSSLIVLWLEGNP 290 (1096)
T ss_pred --------hhhHHhhhhhhccchhHhhhhcchhhhHHH---HHHHHHHHhhcCCc
Confidence 456666777777777777665555443322 23336677776643
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=1.2e-08 Score=97.58 Aligned_cols=129 Identities=26% Similarity=0.334 Sum_probs=103.4
Q ss_pred CccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccc-ccCCCcCCEEE
Q 044468 13 WKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG-ILNLVSLQHLD 90 (396)
Q Consensus 13 ~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-l~~l~~L~~L~ 90 (396)
|..|.+.+++.|.+..+... .-++.|+.|++++|++.++. ++..|++|+.||+++| .+..+|.. ...+. |+.|.
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhh-heeee
Confidence 56788899999998887776 88999999999999998775 3899999999999999 88887742 22344 99999
Q ss_pred ccCCCCCccchhhhcCCcccEEecccccCCCCCC-cchhcCCCcccEEEeeccCccch
Q 044468 91 LSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIP-QPVISDLKMLRALRMFECGFKVE 147 (396)
Q Consensus 91 l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~~ 147 (396)
+++|.++.+- ++.++++|+.||++.| .+.... -..+..+..|+.|++.+|.+.-.
T Consensus 239 lrnN~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 239 LRNNALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred ecccHHHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 9999998774 6889999999999998 433322 22266778899999999876543
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.23 E-value=5e-07 Score=76.95 Aligned_cols=247 Identities=16% Similarity=0.111 Sum_probs=142.5
Q ss_pred CCccccEEEcccccccc-----ccCC-CCCCCCcEEEccCCccC----ccChH------HHhcCccccEEEeecCCCCc-
Q 044468 12 MWKEITRMSLMQNAIQN-----LTET-PTCPHLRALFLHSNHLG----TVSNN------FFHSMASLRVLIFLYNRSLE- 74 (396)
Q Consensus 12 ~~~~L~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~----~~~~~------~~~~l~~L~~L~l~~~~~~~- 74 (396)
.+..++.+++++|.|.. +... .+-.+|+..+++.-..+ +++.. ++.+|++|+..+++.| -++
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccCc
Confidence 46678889999998765 3333 56778888888766322 22221 3678899999999988 444
Q ss_pred cccc----cccCCCcCCEEEccCCCCCccch-----h---------hhcCCcccEEecccccCCCCCCcc----hhcCCC
Q 044468 75 NLPL----GILNLVSLQHLDLSWTGITTLPI-----E---------LKYLVNLKCLNLEYTFCLSRIPQP----VISDLK 132 (396)
Q Consensus 75 ~l~~----~l~~l~~L~~L~l~~~~l~~l~~-----~---------l~~l~~L~~L~l~~~~~~~~~~~~----~i~~l~ 132 (396)
..|+ .++.-..|.+|.+++|++..+.. . ...-+.|+++..+.|++ .+.+.. .+..-.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl-engs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL-ENGSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh-ccCcHHHHHHHHHhhc
Confidence 3343 34566789999998887763321 1 23347788888888743 333321 122235
Q ss_pred cccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcc
Q 044468 133 MLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNL 212 (396)
Q Consensus 133 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 212 (396)
+|+++.+..|.+... +..--....+..+++|+.|+++.+.+.......-...++..+.|+.|.+.+|--...
T Consensus 186 ~lk~vki~qNgIrpe--------gv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 186 NLKEVKIQQNGIRPE--------GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred CceeEEeeecCcCcc--------hhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 788888888776542 001113445667788888888888876544444334455555678888877743222
Q ss_pred cchh---hhh--ccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecC
Q 044468 213 LSAF---SFA--SLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHA 269 (396)
Q Consensus 213 ~~~~---~l~--~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l 269 (396)
-..+ .+. ..|+|..|....+.+..-.+....-..+.. +..|-|..|.+.||++...
T Consensus 258 G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~-~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 258 GVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQ-DAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred cHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhh-cccHHHHHHHHccCcchhH
Confidence 1111 111 246677776665544332221100001111 2566667777777655553
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=4.3e-07 Score=78.38 Aligned_cols=104 Identities=21% Similarity=0.167 Sum_probs=58.9
Q ss_pred EEEccCCccCccC--hHHHhcCccccEEEeecCCCCcccc---ccccCCCcCCEEEccCCCCCccchhh-hcCCcccEEe
Q 044468 40 ALFLHSNHLGTVS--NNFFHSMASLRVLIFLYNRSLENLP---LGILNLVSLQHLDLSWTGITTLPIEL-KYLVNLKCLN 113 (396)
Q Consensus 40 ~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~l~---~~l~~l~~L~~L~l~~~~l~~l~~~l-~~l~~L~~L~ 113 (396)
.|.+.++.+.... ..+-..+.+++.+|+.+| .+.... ..+.++|.|++|+++.|.+...-..+ ...++|++|-
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV 127 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEE
Confidence 4455555553221 223455677888888888 554332 23446777888888777665221122 2456777777
Q ss_pred cccccCCCCCCcchhcCCCcccEEEeeccCc
Q 044468 114 LEYTFCLSRIPQPVISDLKMLRALRMFECGF 144 (396)
Q Consensus 114 l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~ 144 (396)
+.+..............+|.+++|+++.|.+
T Consensus 128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 7666444433333355667777777776643
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.20 E-value=2.2e-07 Score=88.23 Aligned_cols=195 Identities=23% Similarity=0.243 Sum_probs=139.0
Q ss_pred hcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccE
Q 044468 57 HSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRA 136 (396)
Q Consensus 57 ~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~ 136 (396)
..+..++.+.+..+ .+..+-..+..+.+|+.+++..+.+..+...+..+++|++|++++| .+..+.. +..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc--hhhccchhh
Confidence 46677778888888 6666444577899999999999999988766889999999999998 5665544 778888999
Q ss_pred EEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchh
Q 044468 137 LRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAF 216 (396)
Q Consensus 137 L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 216 (396)
|++.+|.+..+ ..+..++.|+.++++++........ . +..+..++.+.+.+........
T Consensus 145 L~l~~N~i~~~---------------~~~~~l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~~i~~-- 203 (414)
T KOG0531|consen 145 LNLSGNLISDI---------------SGLESLKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIREIEG-- 203 (414)
T ss_pred heeccCcchhc---------------cCCccchhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchhcccc--
Confidence 99999988754 5555588888888888887666542 1 2345558888887754433333
Q ss_pred hhhccccccceeeeccccceeeeccccccccccccccc--cCcEeEEeCceeecC-CccCCCCCccEEeecccc
Q 044468 217 SFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFH--SLQKVYINYSKFRHA-TWLVLAPRAKVIRISNCQ 287 (396)
Q Consensus 217 ~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~l~~l-~~l~~l~~L~~L~l~~~~ 287 (396)
+..+..+..+++..+.+..+..- + ... +|+.+++.++.+... ..+..++.++.|++.+..
T Consensus 204 -~~~~~~l~~~~l~~n~i~~~~~l-------~---~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 204 -LDLLKKLVLLSLLDNKISKLEGL-------N---ELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred -hHHHHHHHHhhcccccceeccCc-------c---cchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 33334445556666666544321 0 222 389999999977776 567778888888887654
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=7.2e-07 Score=77.01 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=15.8
Q ss_pred CCcCCEEEccCCCCC---ccchhhhcCCcccEEecccc
Q 044468 83 LVSLQHLDLSWTGIT---TLPIELKYLVNLKCLNLEYT 117 (396)
Q Consensus 83 l~~L~~L~l~~~~l~---~l~~~l~~l~~L~~L~l~~~ 117 (396)
...++.+|+.+|.++ ++...+.+++.|++|+++.|
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N 107 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN 107 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC
Confidence 344444455444443 23333444455555555444
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.08 E-value=2e-06 Score=85.65 Aligned_cols=34 Identities=32% Similarity=0.459 Sum_probs=16.1
Q ss_pred CCCcCCEEEccCCCCCccchhhhcCCcccEEeccc
Q 044468 82 NLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEY 116 (396)
Q Consensus 82 ~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~ 116 (396)
++++|..||+++++++.+ .+++++++|++|.+.+
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhccccHHHHhccC
Confidence 444455555555444444 3444444444444443
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.98 E-value=7.5e-07 Score=68.08 Aligned_cols=110 Identities=15% Similarity=0.250 Sum_probs=74.1
Q ss_pred cccEEEccccccccccCC----CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEE
Q 044468 15 EITRMSLMQNAIQNLTET----PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLD 90 (396)
Q Consensus 15 ~L~~L~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~ 90 (396)
.+..+++++|.+-.+++. ..-.+|...++++|.+.++|+.+..+++.++.+++.+| .+..+|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 344566666655433322 45556777777777777777776666777777777777 7777777777777777777
Q ss_pred ccCCCCCccchhhhcCCcccEEecccccCCCCCCcc
Q 044468 91 LSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQP 126 (396)
Q Consensus 91 l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~ 126 (396)
++.|.+...|+.+..+.+|-.|+..++ -...++.+
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 777777777777766777777776665 33444443
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=1.2e-05 Score=49.55 Aligned_cols=14 Identities=43% Similarity=0.465 Sum_probs=5.1
Q ss_pred cCCCcCCEEEccCC
Q 044468 81 LNLVSLQHLDLSWT 94 (396)
Q Consensus 81 ~~l~~L~~L~l~~~ 94 (396)
+++++|++|++++|
T Consensus 21 ~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 21 SNLPNLETLNLSNN 34 (44)
T ss_dssp TTCTTSSEEEETSS
T ss_pred hCCCCCCEEEecCC
Confidence 33333333333333
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.94 E-value=2.1e-06 Score=73.28 Aligned_cols=150 Identities=13% Similarity=0.038 Sum_probs=78.6
Q ss_pred cCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccch-----hhhhccccccceeeeccccceeeecc
Q 044468 167 ALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSA-----FSFASLRHLWTLHLYFNDFEELNIDA 241 (396)
Q Consensus 167 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-----~~l~~~~~L~~L~l~~~~i~~l~~~~ 241 (396)
.-+.|++..+..+.....+.......+....+|+.+.+..+ ++...++ -.+.-+.+|+.|++..|.++..+..+
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~ 233 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY 233 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence 44566666666666554443333322332234666666542 2222211 12345677888888766665433322
Q ss_pred ccccccccc-cccccCcEeEEeCceeecCC------cc--CCCCCccEEeeccccccceeecccccccchhccccccccc
Q 044468 242 GEVKRIRET-RGFHSLQKVYINYSKFRHAT------WL--VLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILF 312 (396)
Q Consensus 242 ~~~~~~~~~-~~~~~L~~L~l~~~~l~~l~------~l--~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 312 (396)
. ... +..+.|+.|.+..|.++.-. .+ ...|+|..|.+..+..-..++...++.+. .....
T Consensus 234 L-----a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~------e~~~~ 302 (388)
T COG5238 234 L-----ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEF------EQDAV 302 (388)
T ss_pred H-----HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhh------hhccc
Confidence 2 111 24566888888888444311 11 12677777777665544444443333221 34567
Q ss_pred cCcceeeccCCcccccc
Q 044468 313 GRLEYLILEGLQNLKSI 329 (396)
Q Consensus 313 ~~L~~L~l~~~~~l~~~ 329 (396)
|-|..|.+.|+ .+++.
T Consensus 303 p~L~~le~ngN-r~~E~ 318 (388)
T COG5238 303 PLLVDLERNGN-RIKEL 318 (388)
T ss_pred HHHHHHHHccC-cchhH
Confidence 88888888776 34443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.92 E-value=5.3e-06 Score=82.75 Aligned_cols=132 Identities=21% Similarity=0.160 Sum_probs=93.3
Q ss_pred ccccEEEeecCCCCc-ccccccc-CCCcCCEEEccCCCCC--ccchhhhcCCcccEEecccccCCCCCCcchhcCCCccc
Q 044468 60 ASLRVLIFLYNRSLE-NLPLGIL-NLVSLQHLDLSWTGIT--TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLR 135 (396)
Q Consensus 60 ~~L~~L~l~~~~~~~-~l~~~l~-~l~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~ 135 (396)
.+|++|++++...+. ..|..++ .+|+|+.|.+++-.+. ++.....++++|..||++++ .+..+ .+ ++.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~G-IS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SG-ISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HH-HhccccHH
Confidence 579999998874433 3333444 5799999999886554 44455678999999999997 44444 33 88999999
Q ss_pred EEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhh--ccCCCCCcccceEEecc
Q 044468 136 ALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLN--YCNSSRSINTQSLCLRH 206 (396)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~l~~~~~L~~L~l~~ 206 (396)
+|.+.+-.+... ..+..+-+|++|+.|+++.......+.... ...-..+|+|+.|+.++
T Consensus 199 ~L~mrnLe~e~~------------~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 199 VLSMRNLEFESY------------QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHhccCCCCCch------------hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 999988877764 577888899999999998766544332211 12223367788888875
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.87 E-value=2.2e-06 Score=83.27 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=25.4
Q ss_pred ccCcceeeccCCcccccccCCCC--CCCCcceEEeccCcccccC
Q 044468 312 FGRLEYLILEGLQNLKSIHSSYL--PFPRLKEICVWKCAELKKL 353 (396)
Q Consensus 312 ~~~L~~L~l~~~~~l~~~~~~~~--~~~~L~~L~i~~c~~L~~l 353 (396)
+..++.|.+..|........... .+..+..+.+.+|+.+..-
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 33378888888766554333211 1566777777777766553
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=2.9e-05 Score=47.77 Aligned_cols=40 Identities=18% Similarity=0.347 Sum_probs=26.4
Q ss_pred CCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc
Q 044468 36 PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP 77 (396)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~ 77 (396)
++|++|++++|.+.++++. +.+|++|++|++++| .++.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCch-HhCCCCCCEEEecCC-CCCCCc
Confidence 4677777777777777665 677777777777777 555443
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.81 E-value=3.4e-05 Score=63.21 Aligned_cols=124 Identities=21% Similarity=0.181 Sum_probs=68.0
Q ss_pred ccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccccc-CCCcCCEEEccC
Q 044468 16 ITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL-NLVSLQHLDLSW 93 (396)
Q Consensus 16 L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~-~l~~L~~L~l~~ 93 (396)
=+++++.+..+..+... ........+++++|.+..++. +..++.|..|.+..| .++.+...+. .+++|..|.+.+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecC
Confidence 34555555555554333 344455566666666655443 566666677777766 5555544444 345666676766
Q ss_pred CCCCccch--hhhcCCcccEEecccccCCCCC--CcchhcCCCcccEEEeecc
Q 044468 94 TGITTLPI--ELKYLVNLKCLNLEYTFCLSRI--PQPVISDLKMLRALRMFEC 142 (396)
Q Consensus 94 ~~l~~l~~--~l~~l~~L~~L~l~~~~~~~~~--~~~~i~~l~~L~~L~l~~~ 142 (396)
|++..+.. .+..+++|++|.+-+|.....- -.-++..+++|+.|+..+.
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 66553322 2455666666666665332221 1122556666666665543
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.78 E-value=5.2e-05 Score=62.14 Aligned_cols=102 Identities=22% Similarity=0.328 Sum_probs=84.2
Q ss_pred cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc--ccccCCCcCCEEEcc
Q 044468 15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP--LGILNLVSLQHLDLS 92 (396)
Q Consensus 15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~--~~l~~l~~L~~L~l~ 92 (396)
....+++++|++..+.....++.|.+|.+.+|.|..+.+..-..+++|..|.+.+| .+..+. ..+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence 45679999999998877788999999999999999888875566788999999999 666443 236678999999999
Q ss_pred CCCCCccch----hhhcCCcccEEecccc
Q 044468 93 WTGITTLPI----ELKYLVNLKCLNLEYT 117 (396)
Q Consensus 93 ~~~l~~l~~----~l~~l~~L~~L~l~~~ 117 (396)
+|.++.-.. .+..+++|++||+.+.
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 998875443 3788999999999875
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00015 Score=67.02 Aligned_cols=116 Identities=18% Similarity=0.226 Sum_probs=70.7
Q ss_pred cCCCccccEEEccccccccccCCCCCCCCcEEEccCC-ccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCE
Q 044468 10 IGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSN-HLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQH 88 (396)
Q Consensus 10 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~ 88 (396)
+..++++++|++++|.++.+|.. -.+|+.|.+++| .+..+|.. + .++|++|++++|..+..+|. +|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc------ccce
Confidence 44578899999999988888742 236899999886 55666654 3 25799999998866666654 4667
Q ss_pred EEccCCC---CCccchhhhcCCcccEEecccccCCCCCCcchhc-CC-CcccEEEeeccCcc
Q 044468 89 LDLSWTG---ITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVIS-DL-KMLRALRMFECGFK 145 (396)
Q Consensus 89 L~l~~~~---l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~-~l-~~L~~L~l~~~~~~ 145 (396)
|++..+. +..+|.. |+.|.+.+++.....+ +. .+ ++|++|.+.+|...
T Consensus 117 L~L~~n~~~~L~~LPss------Lk~L~I~~~n~~~~~~---lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 117 LEIKGSATDSIKNVPNG------LTSLSINSYNPENQAR---IDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred EEeCCCCCcccccCcch------Hhheeccccccccccc---cccccCCcccEEEecCCCcc
Confidence 7776554 3455543 4445443321111000 11 12 46777777766543
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.62 E-value=1.4e-05 Score=77.78 Aligned_cols=109 Identities=24% Similarity=0.207 Sum_probs=48.2
Q ss_pred CCCCcEEEccCC-ccCc--cChHHHhcCccccEEEeecC-CCCcccc----ccccCCCcCCEEEccCCC-CCc--cchhh
Q 044468 35 CPHLRALFLHSN-HLGT--VSNNFFHSMASLRVLIFLYN-RSLENLP----LGILNLVSLQHLDLSWTG-ITT--LPIEL 103 (396)
Q Consensus 35 ~~~L~~L~l~~~-~~~~--~~~~~~~~l~~L~~L~l~~~-~~~~~l~----~~l~~l~~L~~L~l~~~~-l~~--l~~~l 103 (396)
+++|+.|.+..+ .+.. +.. +...+++|+.|+++++ ......+ .....+.+|+.++++++. +++ +....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDA-LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHH-HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 555666655555 2322 212 2455666666666552 1111111 112234556666666554 441 11112
Q ss_pred hcCCcccEEecccccCC-CCCCcchhcCCCcccEEEeeccCc
Q 044468 104 KYLVNLKCLNLEYTFCL-SRIPQPVISDLKMLRALRMFECGF 144 (396)
Q Consensus 104 ~~l~~L~~L~l~~~~~~-~~~~~~~i~~l~~L~~L~l~~~~~ 144 (396)
..+++|++|.+.+|... +.--..+...+++|++|++.+|..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 23556666665555321 111122233455566666665544
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.62 E-value=6.9e-06 Score=62.91 Aligned_cols=86 Identities=26% Similarity=0.405 Sum_probs=76.5
Q ss_pred cccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEcc
Q 044468 15 EITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLS 92 (396)
Q Consensus 15 ~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~ 92 (396)
.|+..++++|.+.++|.. ..++.++.|++.+|.+.++|.+ +..++.|+.++++.| .+...|.-+..+.+|-+|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcCC
Confidence 577899999999998776 7788999999999999999999 999999999999999 777778777779999999998
Q ss_pred CCCCCccchh
Q 044468 93 WTGITTLPIE 102 (396)
Q Consensus 93 ~~~l~~l~~~ 102 (396)
++....+|..
T Consensus 132 ~na~~eid~d 141 (177)
T KOG4579|consen 132 ENARAEIDVD 141 (177)
T ss_pred CCccccCcHH
Confidence 8888777765
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.25 E-value=0.00081 Score=62.35 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=80.3
Q ss_pred CCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC-CCCccchhhhcCCcccEE
Q 044468 34 TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT-GITTLPIELKYLVNLKCL 112 (396)
Q Consensus 34 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~-~l~~l~~~l~~l~~L~~L 112 (396)
.+.+++.|++++|.+..+|. + -.+|+.|.+++|..++.+|..+ ..+|++|++++| .+..+|. +|+.|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceE
Confidence 46888888888887777762 1 2358888888876777777544 357888888888 6767764 35566
Q ss_pred ecccccCCCCCCcchhcCC-CcccEEEeeccCccchhccchhccCCchhhhHhhh-cC-CCCcEEEEEecccchhhhhhh
Q 044468 113 NLEYTFCLSRIPQPVISDL-KMLRALRMFECGFKVEQEADRILFGDSEVLVEELL-AL-KHLNLLTVTLQIFGALQRLLN 189 (396)
Q Consensus 113 ~l~~~~~~~~~~~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l-~~L~~L~l~~~~~~~~~~~~~ 189 (396)
++.++ .... ++.+ ++|+.|.+.++.... ...+. .+ +.|+.|.+.++.....+.
T Consensus 118 ~L~~n-~~~~-----L~~LPssLk~L~I~~~n~~~---------------~~~lp~~LPsSLk~L~Is~c~~i~LP~--- 173 (426)
T PRK15386 118 EIKGS-ATDS-----IKNVPNGLTSLSINSYNPEN---------------QARIDNLISPSLKTLSLTGCSNIILPE--- 173 (426)
T ss_pred EeCCC-CCcc-----cccCcchHhheecccccccc---------------ccccccccCCcccEEEecCCCcccCcc---
Confidence 66543 1111 2233 356777765432111 01111 12 578888888766544331
Q ss_pred ccCCCCCcccceEEeccc
Q 044468 190 YCNSSRSINTQSLCLRHL 207 (396)
Q Consensus 190 ~~~l~~~~~L~~L~l~~~ 207 (396)
.++. +|+.|.+..+
T Consensus 174 --~LP~--SLk~L~ls~n 187 (426)
T PRK15386 174 --KLPE--SLQSITLHIE 187 (426)
T ss_pred --cccc--cCcEEEeccc
Confidence 2332 3888888653
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.20 E-value=0.00014 Score=62.08 Aligned_cols=104 Identities=28% Similarity=0.204 Sum_probs=57.0
Q ss_pred CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecC--CCCccccccccCCCcCCEEEccCCCCCccc--hhhhcCCc
Q 044468 33 PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYN--RSLENLPLGILNLVSLQHLDLSWTGITTLP--IELKYLVN 108 (396)
Q Consensus 33 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~--~~l~~l~~ 108 (396)
..+..|+.|++.+..+..+.. +..+++|++|.++.| .....++....++++|+++++++|++..+. ..+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 456666666666665554433 566677777777776 222344433445577777777777665321 12455666
Q ss_pred ccEEecccccCCCCCC--cchhcCCCcccEEE
Q 044468 109 LKCLNLEYTFCLSRIP--QPVISDLKMLRALR 138 (396)
Q Consensus 109 L~~L~l~~~~~~~~~~--~~~i~~l~~L~~L~ 138 (396)
|..|++.+|....... ..++.-+++|.+|+
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 6677776663332111 12233455555554
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.18 E-value=0.0019 Score=50.35 Aligned_cols=118 Identities=20% Similarity=0.369 Sum_probs=54.2
Q ss_pred ccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCc
Q 044468 9 RIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVS 85 (396)
Q Consensus 9 ~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~ 85 (396)
.|..+++|+.+.+.. .+..++.. ..+.+|+.+.+..+ +..++...+..++.++.+.+..+ +..++ ..+..+.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--cccccccccccccc
Confidence 466677777777774 46666554 66777888877664 66666666777777888877543 33333 34555777
Q ss_pred CCEEEccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcc
Q 044468 86 LQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKML 134 (396)
Q Consensus 86 L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L 134 (396)
|+.+.+..+ +..++.. +.++ +|+.+.+..+ ...++...+.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 777777553 4444333 4455 6777766542 333444445555554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00025 Score=60.65 Aligned_cols=103 Identities=26% Similarity=0.320 Sum_probs=75.0
Q ss_pred CccccEEEccccccccccCCCCCCCCcEEEccCC--cc-CccChHHHhcCccccEEEeecCCCCcccc--ccccCCCcCC
Q 044468 13 WKEITRMSLMQNAIQNLTETPTCPHLRALFLHSN--HL-GTVSNNFFHSMASLRVLIFLYNRSLENLP--LGILNLVSLQ 87 (396)
Q Consensus 13 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~--~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~l~--~~l~~l~~L~ 87 (396)
...+..+++.+..++++.....+++|+.|.++.| ++ ..++.. ...+++|+++++++| .+..+. ..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-ccccccccchhhhhcchh
Confidence 4467777888888888776678899999999999 44 244444 567799999999999 555322 2345778889
Q ss_pred EEEccCCCCCccch----hhhcCCcccEEecccc
Q 044468 88 HLDLSWTGITTLPI----ELKYLVNLKCLNLEYT 117 (396)
Q Consensus 88 ~L~l~~~~l~~l~~----~l~~l~~L~~L~l~~~ 117 (396)
.|++.+|..+.+-. .+.-+++|++|+-...
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 99999987664322 3556889999987664
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=3.4e-05 Score=66.31 Aligned_cols=100 Identities=25% Similarity=0.253 Sum_probs=54.7
Q ss_pred CCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccch--hhhcCCcccEE
Q 044468 35 CPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPI--ELKYLVNLKCL 112 (396)
Q Consensus 35 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~--~l~~l~~L~~L 112 (396)
+.+.+.|++.+|.+.+|.- ..+++.|++|.++-| .++.+.+ +..+++|+.|.|+.|.|..+.+ .+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3455556666666665532 566666666666666 5554432 4556666666666666654432 35566666666
Q ss_pred ecccccCCCCCC----cchhcCCCcccEEE
Q 044468 113 NLEYTFCLSRIP----QPVISDLKMLRALR 138 (396)
Q Consensus 113 ~l~~~~~~~~~~----~~~i~~l~~L~~L~ 138 (396)
.+..|.-.+.-+ ..++.-+++|+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 665543222222 12344556666554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=6.7e-05 Score=64.54 Aligned_cols=99 Identities=22% Similarity=0.254 Sum_probs=77.8
Q ss_pred CCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc--cccCCCcCCEE
Q 044468 12 MWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL--GILNLVSLQHL 89 (396)
Q Consensus 12 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~--~l~~l~~L~~L 89 (396)
.+.+++.|++.+++++++.-...++.|.+|.++-|+|..+.+ +..|.+|+.|.+..| .+..+.+ -+.++++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 356788899999999987655889999999999999988866 899999999999999 6665543 45689999999
Q ss_pred EccCCCCC--ccc----hhhhcCCcccEEe
Q 044468 90 DLSWTGIT--TLP----IELKYLVNLKCLN 113 (396)
Q Consensus 90 ~l~~~~l~--~l~----~~l~~l~~L~~L~ 113 (396)
-|..|... .-+ ..+.-+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99877433 222 2356788888886
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.0003 Score=57.81 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=33.8
Q ss_pred hhhccccccceeee-ccccceeeeccccccccccccccccCcEeEEeCc-eeec--CCccCCCCCccEEeeccccc
Q 044468 217 SFASLRHLWTLHLY-FNDFEELNIDAGEVKRIRETRGFHSLQKVYINYS-KFRH--ATWLVLAPRAKVIRISNCQR 288 (396)
Q Consensus 217 ~l~~~~~L~~L~l~-~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~--l~~l~~l~~L~~L~l~~~~~ 288 (396)
.+..++.++.|.+. |..+.+..++..+. ..++|+.|+|++| ++|+ +.++..+++|+.|.|.+.+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-------~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGG-------LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcc-------cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 34444555555555 55555544433322 4556666666666 5555 44555555565555555443
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.86 E-value=0.028 Score=43.62 Aligned_cols=102 Identities=18% Similarity=0.309 Sum_probs=44.6
Q ss_pred CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCCCCCccch-hhhcCCccc
Q 044468 33 PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWTGITTLPI-ELKYLVNLK 110 (396)
Q Consensus 33 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~ 110 (396)
.++.+|+.+.+.. .+..+....|..+..|+.+.+..+ +..++ ..+.++++++.+.+.. .+..++. .+..+++|+
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 4566666666654 355555555666666777776554 33333 3345555667776654 3333333 244566666
Q ss_pred EEecccccCCCCCCcchhcCCCcccEEEeec
Q 044468 111 CLNLEYTFCLSRIPQPVISDLKMLRALRMFE 141 (396)
Q Consensus 111 ~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~ 141 (396)
.+++..+ ...++...+..+ +++.+.+..
T Consensus 85 ~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 85 NIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 6666542 233333335555 666665543
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.20 E-value=0.0076 Score=30.74 Aligned_cols=9 Identities=33% Similarity=0.121 Sum_probs=3.7
Q ss_pred ccEEEeecC
Q 044468 62 LRVLIFLYN 70 (396)
Q Consensus 62 L~~L~l~~~ 70 (396)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 334444444
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.76 E-value=0.022 Score=26.94 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=9.5
Q ss_pred CCcceEEeccCcccccCC
Q 044468 337 PRLKEICVWKCAELKKLP 354 (396)
Q Consensus 337 ~~L~~L~i~~c~~L~~lp 354 (396)
++|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467777777775 77766
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.33 E-value=0.023 Score=47.02 Aligned_cols=82 Identities=20% Similarity=0.128 Sum_probs=55.6
Q ss_pred ccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCccc
Q 044468 134 LRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLL 213 (396)
Q Consensus 134 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 213 (396)
++.++.+++.+..+ .+..+..++.++.+.+.....-....+..+.. -.++|+.|.+++|..++..
T Consensus 103 IeaVDAsds~I~~e-------------Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 103 IEAVDASDSSIMYE-------------GLEHLRDLRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred EEEEecCCchHHHH-------------HHHHHhccchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeechh
Confidence 56667677666553 66677777777777766555433333333333 3455888888888888888
Q ss_pred chhhhhccccccceeee
Q 044468 214 SAFSFASLRHLWTLHLY 230 (396)
Q Consensus 214 ~~~~l~~~~~L~~L~l~ 230 (396)
.+..+..+++|+.|++.
T Consensus 168 GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 168 GLACLLKLKNLRRLHLY 184 (221)
T ss_pred HHHHHHHhhhhHHHHhc
Confidence 87777778888888876
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.30 E-value=0.022 Score=28.99 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=9.4
Q ss_pred CCEEEccCCCCCccchhh
Q 044468 86 LQHLDLSWTGITTLPIEL 103 (396)
Q Consensus 86 L~~L~l~~~~l~~l~~~l 103 (396)
|++|++++|.++.+|..+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.48 E-value=0.39 Score=25.33 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=12.3
Q ss_pred CCCcEEEccCCccCccChHH
Q 044468 36 PHLRALFLHSNHLGTVSNNF 55 (396)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~ 55 (396)
++|+.|++++|.+..+|.+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666666553
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.48 E-value=0.39 Score=25.33 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=12.3
Q ss_pred CCCcEEEccCCccCccChHH
Q 044468 36 PHLRALFLHSNHLGTVSNNF 55 (396)
Q Consensus 36 ~~L~~L~l~~~~~~~~~~~~ 55 (396)
++|+.|++++|.+..+|.+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666666553
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.85 E-value=0.45 Score=25.11 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=11.3
Q ss_pred CcCCEEEccCCCCCccchh
Q 044468 84 VSLQHLDLSWTGITTLPIE 102 (396)
Q Consensus 84 ~~L~~L~l~~~~l~~l~~~ 102 (396)
++|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666665544
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.85 E-value=0.45 Score=25.11 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=11.3
Q ss_pred CcCCEEEccCCCCCccchh
Q 044468 84 VSLQHLDLSWTGITTLPIE 102 (396)
Q Consensus 84 ~~L~~L~l~~~~l~~l~~~ 102 (396)
++|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666665544
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.87 E-value=0.29 Score=25.93 Aligned_cols=17 Identities=24% Similarity=0.604 Sum_probs=11.1
Q ss_pred CCCcceEEeccCccccc
Q 044468 336 FPRLKEICVWKCAELKK 352 (396)
Q Consensus 336 ~~~L~~L~i~~c~~L~~ 352 (396)
+++|+.|++++|+.+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 45677777777766654
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.71 E-value=0.019 Score=48.51 Aligned_cols=83 Identities=19% Similarity=0.095 Sum_probs=48.7
Q ss_pred CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEE
Q 044468 33 PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCL 112 (396)
Q Consensus 33 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L 112 (396)
..++..+.|+++.+.+..+... |+.+..+..|+++.+ .+..+|..++....++++++..|..+..|.+.+..++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 4455556666666654444333 555555666666665 55556666666666666666556666666666666666666
Q ss_pred ecccc
Q 044468 113 NLEYT 117 (396)
Q Consensus 113 ~l~~~ 117 (396)
+.-++
T Consensus 117 e~k~~ 121 (326)
T KOG0473|consen 117 EQKKT 121 (326)
T ss_pred hhccC
Confidence 65554
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.09 E-value=0.029 Score=47.49 Aligned_cols=95 Identities=21% Similarity=0.097 Sum_probs=77.4
Q ss_pred CccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchh
Q 044468 49 GTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVI 128 (396)
Q Consensus 49 ~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i 128 (396)
+++|---+..+...++||++.+ .+..+-..+.-++.|..|+++.+.+..+|...+....++.++...| .....|.. .
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~ 107 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-Q 107 (326)
T ss_pred cccchhhhhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-c
Confidence 4555333788889999999999 6666666677788899999999999999999999988999988776 56677887 8
Q ss_pred cCCCcccEEEeeccCccc
Q 044468 129 SDLKMLRALRMFECGFKV 146 (396)
Q Consensus 129 ~~l~~L~~L~l~~~~~~~ 146 (396)
+..+.+++++..++.+..
T Consensus 108 ~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred cccCCcchhhhccCcchH
Confidence 899999999988887654
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=78.94 E-value=0.028 Score=54.05 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=9.6
Q ss_pred hHhhhcCCCCcEEEEEecccc
Q 044468 162 VEELLALKHLNLLTVTLQIFG 182 (396)
Q Consensus 162 ~~~l~~l~~L~~L~l~~~~~~ 182 (396)
...+...+.++++.+..+...
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhhhHHHHHhhcccCccc
Confidence 334444444555555444443
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=78.72 E-value=0.025 Score=54.48 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=16.5
Q ss_pred ccCcEeEEeCceeecCC------ccCCCCCccEEeecccc
Q 044468 254 HSLQKVYINYSKFRHAT------WLVLAPRAKVIRISNCQ 287 (396)
Q Consensus 254 ~~L~~L~l~~~~l~~l~------~l~~l~~L~~L~l~~~~ 287 (396)
+.+++++++.|.+++-. .+..++.+++|.+..++
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 34456666666444421 12334555555555444
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.14 E-value=2.2 Score=22.60 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=12.7
Q ss_pred CcCCEEEccCCCCCccch
Q 044468 84 VSLQHLDLSWTGITTLPI 101 (396)
Q Consensus 84 ~~L~~L~l~~~~l~~l~~ 101 (396)
++|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357777777777777765
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=67.77 E-value=3.4 Score=21.12 Aligned_cols=15 Identities=13% Similarity=0.051 Sum_probs=8.1
Q ss_pred CcccEEEeeccCccc
Q 044468 132 KMLRALRMFECGFKV 146 (396)
Q Consensus 132 ~~L~~L~l~~~~~~~ 146 (396)
++|++|++++|.+..
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 456666666666554
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.79 E-value=1.5 Score=42.22 Aligned_cols=35 Identities=20% Similarity=0.405 Sum_probs=15.2
Q ss_pred ccccCcEeEEeCceeecCCccC----CCCCccEEeeccc
Q 044468 252 GFHSLQKVYINYSKFRHATWLV----LAPRAKVIRISNC 286 (396)
Q Consensus 252 ~~~~L~~L~l~~~~l~~l~~l~----~l~~L~~L~l~~~ 286 (396)
.++.+..+.+++|++..+..+. ..|+|+.|+|+++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3444444555544333332221 1455555555544
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=61.08 E-value=7.8 Score=20.55 Aligned_cols=14 Identities=43% Similarity=0.541 Sum_probs=7.7
Q ss_pred CcCCEEEccCCCCC
Q 044468 84 VSLQHLDLSWTGIT 97 (396)
Q Consensus 84 ~~L~~L~l~~~~l~ 97 (396)
.+|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=50.64 E-value=14 Score=19.75 Aligned_cols=14 Identities=43% Similarity=0.446 Sum_probs=8.3
Q ss_pred CcCCEEEccCCCCC
Q 044468 84 VSLQHLDLSWTGIT 97 (396)
Q Consensus 84 ~~L~~L~l~~~~l~ 97 (396)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666554
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.18 E-value=11 Score=36.53 Aligned_cols=81 Identities=19% Similarity=0.152 Sum_probs=44.2
Q ss_pred CCCCCCcEEEccCCccCccC--hHHHhcCccccEEEeecCCCCcccccccc--CCCcCCEEEccCCCCC-cc-------c
Q 044468 33 PTCPHLRALFLHSNHLGTVS--NNFFHSMASLRVLIFLYNRSLENLPLGIL--NLVSLQHLDLSWTGIT-TL-------P 100 (396)
Q Consensus 33 ~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~l~~~l~--~l~~L~~L~l~~~~l~-~l-------~ 100 (396)
.+.+.+..+++++|++..+. .+.....|+|+.|+|++|.........+. +...|+.|-+.+|.+. +. .
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 67777777778877654332 22245567788888877722211112222 2344677777777654 11 1
Q ss_pred hhhhcCCcccEEe
Q 044468 101 IELKYLVNLKCLN 113 (396)
Q Consensus 101 ~~l~~l~~L~~L~ 113 (396)
......++|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 1123566666665
Done!