Query 044468
Match_columns 396
No_of_seqs 178 out of 2629
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 05:36:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 100.0 5E-28 1.7E-32 223.6 22.1 308 4-370 34-341 (347)
2 4fmz_A Internalin; leucine ric 100.0 2.6E-27 8.7E-32 218.9 23.5 291 2-348 54-344 (347)
3 3v47_A TOLL-like receptor 5B a 100.0 7.8E-27 2.7E-31 223.6 22.5 328 2-369 20-402 (455)
4 4eco_A Uncharacterized protein 99.9 2.9E-27 9.8E-32 235.4 16.8 335 7-378 198-603 (636)
5 2id5_A Lingo-1, leucine rich r 99.9 5.7E-26 2E-30 218.9 25.0 304 2-348 21-331 (477)
6 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-25 4.5E-30 222.8 28.0 143 2-147 21-168 (606)
7 1o6v_A Internalin A; bacterial 99.9 3.6E-26 1.2E-30 219.5 22.7 135 3-146 57-191 (466)
8 3o6n_A APL1; leucine-rich repe 99.9 6.3E-26 2.2E-30 212.9 22.3 287 12-355 43-335 (390)
9 4ecn_A Leucine-rich repeat pro 99.9 1.6E-26 5.6E-31 234.6 19.4 334 7-378 440-843 (876)
10 2z63_A TOLL-like receptor 4, v 99.9 5.1E-25 1.7E-29 217.0 28.4 142 2-146 17-163 (570)
11 4eco_A Uncharacterized protein 99.9 1.9E-26 6.4E-31 229.5 17.8 184 28-235 197-415 (636)
12 2z81_A CD282 antigen, TOLL-lik 99.9 9E-26 3.1E-30 221.4 21.8 180 2-183 15-210 (549)
13 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-25 4.6E-30 222.8 22.2 334 9-368 51-551 (606)
14 3t6q_A CD180 antigen; protein- 99.9 7.9E-25 2.7E-29 217.2 27.2 143 2-147 22-168 (606)
15 1o6v_A Internalin A; bacterial 99.9 6.9E-25 2.3E-29 210.6 25.2 306 3-355 79-392 (466)
16 2id5_A Lingo-1, leucine rich r 99.9 3.7E-25 1.3E-29 213.3 23.1 308 16-368 13-326 (477)
17 2z7x_B TOLL-like receptor 1, v 99.9 5.6E-25 1.9E-29 214.3 22.7 134 2-144 10-150 (520)
18 3t6q_A CD180 antigen; protein- 99.9 1.2E-25 4.2E-30 223.0 18.0 274 56-368 274-553 (606)
19 3oja_B Anopheles plasmodium-re 99.9 3.5E-25 1.2E-29 219.1 20.9 290 13-348 50-356 (597)
20 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-24 3.7E-29 214.2 23.8 134 3-144 42-181 (562)
21 2z81_A CD282 antigen, TOLL-lik 99.9 3.4E-25 1.2E-29 217.3 19.7 132 9-142 45-182 (549)
22 3bz5_A Internalin-J, INLJ; leu 99.9 5.3E-25 1.8E-29 210.2 19.8 227 8-284 36-262 (457)
23 2z63_A TOLL-like receptor 4, v 99.9 2.9E-25 9.8E-30 218.8 17.2 346 9-370 47-526 (570)
24 4ecn_A Leucine-rich repeat pro 99.9 6.5E-25 2.2E-29 222.9 19.5 278 29-346 440-785 (876)
25 3rgz_A Protein brassinosteroid 99.9 9.1E-25 3.1E-29 222.2 20.4 155 11-181 197-355 (768)
26 3rgz_A Protein brassinosteroid 99.9 1.1E-24 3.7E-29 221.6 20.7 92 252-356 630-723 (768)
27 3o6n_A APL1; leucine-rich repe 99.9 1.5E-24 5E-29 203.6 19.7 270 33-356 42-313 (390)
28 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-24 6E-29 198.5 19.7 294 15-348 34-331 (332)
29 1xku_A Decorin; proteoglycan, 99.9 7.5E-24 2.6E-28 194.2 23.1 293 15-347 32-329 (330)
30 3v47_A TOLL-like receptor 5B a 99.9 5.3E-24 1.8E-28 203.9 22.7 312 8-354 48-412 (455)
31 3j0a_A TOLL-like receptor 5; m 99.9 2E-23 6.9E-28 214.4 27.9 143 2-147 14-163 (844)
32 1ziw_A TOLL-like receptor 3; i 99.9 2.1E-23 7.1E-28 209.8 26.3 260 2-286 14-306 (680)
33 3bz5_A Internalin-J, INLJ; leu 99.9 8.1E-24 2.8E-28 202.0 21.4 292 3-353 53-354 (457)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.4E-23 1.9E-27 202.1 24.2 130 12-146 29-160 (562)
35 3oja_B Anopheles plasmodium-re 99.9 1.3E-23 4.6E-28 207.7 19.2 290 33-369 48-352 (597)
36 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-22 3.7E-27 198.1 25.0 144 17-181 3-150 (520)
37 1ziw_A TOLL-like receptor 3; i 99.9 1.5E-22 5E-27 203.6 25.7 359 4-370 37-462 (680)
38 4g8a_A TOLL-like receptor 4; l 99.9 2.6E-22 8.9E-27 199.9 25.4 142 2-147 41-188 (635)
39 3j0a_A TOLL-like receptor 5; m 99.9 1.7E-22 5.9E-27 207.4 23.0 306 8-356 42-399 (844)
40 2z80_A TOLL-like receptor 2, v 99.9 6.6E-23 2.3E-27 189.7 16.2 275 12-325 29-313 (353)
41 1ogq_A PGIP-2, polygalacturona 99.9 6.2E-23 2.1E-27 186.5 13.4 250 36-330 50-308 (313)
42 1xku_A Decorin; proteoglycan, 99.9 1.1E-21 3.7E-26 179.8 21.4 275 3-323 42-329 (330)
43 2ft3_A Biglycan; proteoglycan, 99.9 5E-22 1.7E-26 182.2 19.2 275 3-324 44-331 (332)
44 1ogq_A PGIP-2, polygalacturona 99.9 1.9E-22 6.6E-27 183.2 15.4 254 60-356 50-310 (313)
45 4fcg_A Uncharacterized protein 99.9 7.9E-22 2.7E-26 180.3 16.9 219 35-322 80-310 (328)
46 4fcg_A Uncharacterized protein 99.9 6.9E-22 2.4E-26 180.7 16.0 86 58-146 79-164 (328)
47 2z80_A TOLL-like receptor 2, v 99.9 2.6E-21 9.1E-26 178.9 19.7 274 35-348 30-312 (353)
48 3zyj_A Leucine-rich repeat-con 99.9 5.5E-21 1.9E-25 182.1 21.3 242 16-287 45-290 (440)
49 3zyi_A Leucine-rich repeat-con 99.9 6.2E-21 2.1E-25 182.3 21.1 242 16-287 56-301 (452)
50 2z66_A Variable lymphocyte rec 99.9 2E-21 6.8E-26 176.1 15.9 244 17-287 10-259 (306)
51 1jl5_A Outer protein YOPM; leu 99.9 1.1E-20 3.7E-25 180.3 20.6 274 14-351 111-409 (454)
52 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-22 6.6E-27 183.7 7.1 235 15-287 11-248 (317)
53 2z66_A Variable lymphocyte rec 99.9 4.1E-21 1.4E-25 174.0 15.7 238 2-268 17-262 (306)
54 1jl5_A Outer protein YOPM; leu 99.9 5.6E-20 1.9E-24 175.3 24.3 279 14-354 91-373 (454)
55 4g8a_A TOLL-like receptor 4; l 99.9 3.3E-20 1.1E-24 184.8 23.1 340 4-368 64-573 (635)
56 3g06_A SSPH2 (leucine-rich rep 99.9 4E-20 1.4E-24 181.9 22.5 255 15-348 41-295 (622)
57 1ozn_A Reticulon 4 receptor; N 99.8 2E-20 6.8E-25 167.7 14.9 218 17-287 14-236 (285)
58 3o53_A Protein LRIM1, AGAP0063 99.8 1.9E-21 6.5E-26 177.1 6.4 271 37-360 11-285 (317)
59 1wwl_A Monocyte differentiatio 99.8 1.2E-21 4E-26 178.1 4.5 250 10-287 39-307 (312)
60 3g06_A SSPH2 (leucine-rich rep 99.8 2.9E-19 9.8E-24 175.8 21.8 246 2-324 50-295 (622)
61 3zyi_A Leucine-rich repeat-con 99.8 3E-19 1E-23 170.7 20.0 242 37-324 55-301 (452)
62 3zyj_A Leucine-rich repeat-con 99.8 2.4E-19 8.3E-24 170.7 19.2 242 37-324 44-290 (440)
63 1ozn_A Reticulon 4 receptor; N 99.8 3.2E-19 1.1E-23 159.9 18.3 166 2-182 21-190 (285)
64 1z7x_W Ribonuclease inhibitor; 99.8 2.3E-21 7.8E-26 185.9 -0.0 324 11-351 25-411 (461)
65 3ogk_B Coronatine-insensitive 99.8 2.7E-20 9.1E-25 184.1 7.4 304 12-352 162-527 (592)
66 1h6u_A Internalin H; cell adhe 99.8 8.5E-19 2.9E-23 158.7 15.9 195 34-270 39-233 (308)
67 3oja_A Leucine-rich immune mol 99.8 1.1E-19 3.7E-24 175.0 9.1 216 33-287 31-248 (487)
68 1z7x_W Ribonuclease inhibitor; 99.8 4.7E-21 1.6E-25 183.7 -0.7 259 13-286 2-294 (461)
69 2z62_A TOLL-like receptor 4, v 99.8 6.3E-18 2.2E-22 150.6 18.7 132 14-147 28-164 (276)
70 2z62_A TOLL-like receptor 4, v 99.8 4.3E-18 1.5E-22 151.7 17.0 217 18-287 11-235 (276)
71 3ogk_B Coronatine-insensitive 99.8 2.2E-19 7.5E-24 177.5 8.6 298 15-351 139-501 (592)
72 3rfs_A Internalin B, repeat mo 99.8 2.1E-18 7.3E-23 153.3 13.9 158 8-182 35-194 (272)
73 1h6u_A Internalin H; cell adhe 99.8 1.6E-18 5.4E-23 157.0 13.0 198 9-238 36-233 (308)
74 1wwl_A Monocyte differentiatio 99.8 1.8E-19 6.1E-24 163.6 4.9 128 34-181 41-185 (312)
75 1p9a_G Platelet glycoprotein I 99.8 9.7E-18 3.3E-22 150.4 16.0 204 9-267 5-208 (290)
76 2o6q_A Variable lymphocyte rec 99.8 1.7E-17 5.7E-22 147.4 17.3 200 15-267 17-218 (270)
77 2p1m_B Transport inhibitor res 99.8 2.9E-19 1E-23 176.7 6.1 301 12-349 128-518 (594)
78 2xwt_C Thyrotropin receptor; s 99.8 4.6E-18 1.6E-22 148.2 12.4 208 23-287 20-237 (239)
79 3oja_A Leucine-rich immune mol 99.8 5E-18 1.7E-22 163.4 13.3 233 12-284 32-270 (487)
80 2o6q_A Variable lymphocyte rec 99.7 5.3E-17 1.8E-21 144.1 17.7 185 3-207 27-215 (270)
81 2ast_B S-phase kinase-associat 99.7 3.9E-18 1.3E-22 156.4 9.4 126 37-179 48-178 (336)
82 4ay9_X Follicle-stimulating ho 99.7 5E-17 1.7E-21 149.9 15.8 238 17-285 12-255 (350)
83 4ay9_X Follicle-stimulating ho 99.7 1E-16 3.4E-21 147.9 17.1 104 39-146 12-118 (350)
84 3rfs_A Internalin B, repeat mo 99.7 9.3E-17 3.2E-21 142.7 15.3 164 3-181 52-217 (272)
85 2ast_B S-phase kinase-associat 99.7 6.5E-18 2.2E-22 155.0 8.0 219 16-264 49-282 (336)
86 1p9a_G Platelet glycoprotein I 99.7 1.3E-16 4.5E-21 142.9 15.6 183 2-207 20-205 (290)
87 2ca6_A RAN GTPase-activating p 99.7 1.5E-18 5.1E-23 162.4 2.4 239 33-287 29-314 (386)
88 2xwt_C Thyrotropin receptor; s 99.7 5.6E-17 1.9E-21 141.3 12.0 204 4-264 23-236 (239)
89 2ca6_A RAN GTPase-activating p 99.7 5.1E-18 1.7E-22 158.8 5.1 261 9-285 27-339 (386)
90 2p1m_B Transport inhibitor res 99.7 1.2E-18 4.1E-23 172.3 0.4 263 13-290 104-416 (594)
91 1h6t_A Internalin B; cell adhe 99.7 2.5E-16 8.6E-21 141.2 14.7 130 9-146 41-170 (291)
92 4ezg_A Putative uncharacterize 99.7 3E-16 1E-20 132.4 13.5 153 10-182 40-194 (197)
93 4glp_A Monocyte differentiatio 99.7 5.2E-17 1.8E-21 147.2 9.1 228 36-287 64-305 (310)
94 3m19_A Variable lymphocyte rec 99.7 7.3E-16 2.5E-20 135.2 16.0 175 14-208 14-190 (251)
95 3goz_A Leucine-rich repeat-con 99.7 8.6E-17 2.9E-21 149.0 9.8 254 19-287 3-295 (362)
96 3m19_A Variable lymphocyte rec 99.7 1.1E-15 3.7E-20 134.1 15.6 166 2-183 24-193 (251)
97 1h6t_A Internalin B; cell adhe 99.7 2.8E-15 9.5E-20 134.4 16.7 158 3-183 57-214 (291)
98 3goz_A Leucine-rich repeat-con 99.7 7.2E-17 2.5E-21 149.6 6.0 263 40-324 2-295 (362)
99 1xeu_A Internalin C; cellular 99.6 2E-15 6.9E-20 133.2 13.3 153 5-181 32-184 (263)
100 1m9s_A Internalin B; cell inva 99.6 2E-15 6.7E-20 148.4 13.7 174 5-207 34-207 (605)
101 3e6j_A Variable lymphocyte rec 99.6 7.5E-15 2.6E-19 126.8 15.3 130 14-145 40-172 (229)
102 4glp_A Monocyte differentiatio 99.6 8.9E-16 3E-20 139.1 8.4 225 15-268 65-308 (310)
103 4ezg_A Putative uncharacterize 99.6 6.3E-15 2.2E-19 124.2 12.1 139 2-146 54-195 (197)
104 2v9t_B SLIT homolog 2 protein 99.6 1.1E-14 3.8E-19 124.9 13.5 151 17-183 14-166 (220)
105 2v9t_B SLIT homolog 2 protein 99.6 1.7E-14 5.7E-19 123.8 14.6 142 2-146 21-166 (220)
106 2o6s_A Variable lymphocyte rec 99.6 2.8E-14 9.4E-19 121.4 15.3 131 13-145 27-161 (208)
107 1m9s_A Internalin B; cell inva 99.6 1.2E-14 4E-19 142.8 14.5 158 3-183 54-211 (605)
108 1xeu_A Internalin C; cellular 99.6 2E-15 7E-20 133.2 8.2 165 12-206 17-181 (263)
109 2v70_A SLIT-2, SLIT homolog 2 99.6 2.6E-14 9E-19 122.6 13.4 152 16-183 13-167 (220)
110 2xot_A Amphoterin-induced prot 99.6 2.8E-14 9.5E-19 132.0 13.3 164 3-182 29-202 (361)
111 3e6j_A Variable lymphocyte rec 99.5 4.6E-14 1.6E-18 121.8 13.3 150 16-182 21-172 (229)
112 2v70_A SLIT-2, SLIT homolog 2 99.5 7.2E-14 2.5E-18 119.8 13.9 141 3-146 22-167 (220)
113 2o6s_A Variable lymphocyte rec 99.5 1.4E-13 4.7E-18 117.0 14.3 149 16-180 9-159 (208)
114 2ell_A Acidic leucine-rich nuc 99.5 3.4E-14 1.2E-18 116.4 9.8 128 14-145 24-160 (168)
115 1a9n_A U2A', U2A'; complex (nu 99.5 1.8E-14 6.1E-19 119.1 7.5 134 7-144 12-152 (176)
116 3cvr_A Invasion plasmid antige 99.5 2.7E-13 9.1E-18 131.9 15.5 137 15-185 60-196 (571)
117 2je0_A Acidic leucine-rich nuc 99.5 5.2E-14 1.8E-18 112.9 8.4 124 13-140 16-148 (149)
118 2ell_A Acidic leucine-rich nuc 99.5 2.5E-13 8.4E-18 111.3 11.0 138 33-184 21-162 (168)
119 2xot_A Amphoterin-induced prot 99.4 5.6E-13 1.9E-17 123.2 12.1 157 16-185 20-179 (361)
120 3cvr_A Invasion plasmid antige 99.4 1E-12 3.5E-17 127.8 13.6 169 3-207 70-240 (571)
121 1w8a_A SLIT protein; signaling 99.4 9.2E-13 3.1E-17 110.4 11.4 128 16-146 10-140 (192)
122 2wfh_A SLIT homolog 2 protein 99.4 2.5E-12 8.5E-17 107.8 13.4 127 16-146 12-140 (193)
123 2je0_A Acidic leucine-rich nuc 99.4 3.8E-13 1.3E-17 107.8 8.0 129 33-176 14-147 (149)
124 2o6r_A Variable lymphocyte rec 99.4 4.3E-12 1.5E-16 104.8 13.6 129 15-146 8-138 (177)
125 1a9n_A U2A', U2A'; complex (nu 99.4 1.4E-12 4.8E-17 107.6 9.1 115 3-118 30-151 (176)
126 1dce_A Protein (RAB geranylger 99.4 4.9E-13 1.7E-17 130.5 6.8 124 37-175 442-566 (567)
127 4b8c_D Glucose-repressible alc 99.3 2.2E-12 7.6E-17 129.7 9.5 111 33-147 221-331 (727)
128 2o6r_A Variable lymphocyte rec 99.3 1.1E-11 3.6E-16 102.4 12.0 120 2-123 17-140 (177)
129 1dce_A Protein (RAB geranylger 99.3 5.8E-12 2E-16 122.9 11.6 122 15-139 442-567 (567)
130 1w8a_A SLIT protein; signaling 99.3 4.6E-12 1.6E-16 106.1 9.2 126 39-182 11-139 (192)
131 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4.2E-16 103.5 11.7 117 2-120 20-139 (193)
132 1ds9_A Outer arm dynein; leuci 99.3 5.3E-14 1.8E-18 118.6 -3.2 109 33-146 45-154 (198)
133 4b8c_D Glucose-repressible alc 99.3 6.1E-13 2.1E-17 133.8 2.1 116 9-126 219-335 (727)
134 3sb4_A Hypothetical leucine ri 99.3 1.5E-11 5.2E-16 112.1 11.0 251 13-283 48-328 (329)
135 4fdw_A Leucine rich hypothetic 99.3 2.5E-10 8.4E-15 106.6 18.9 258 13-322 112-379 (401)
136 3sb4_A Hypothetical leucine ri 99.3 1.2E-11 4.3E-16 112.6 9.5 271 13-320 24-328 (329)
137 1ds9_A Outer arm dynein; leuci 99.2 1.6E-13 5.4E-18 115.7 -4.3 127 9-138 43-180 (198)
138 4fdw_A Leucine rich hypothetic 99.2 1.3E-09 4.4E-14 101.7 21.6 258 33-345 110-378 (401)
139 2r9u_A Variable lymphocyte rec 99.2 1.2E-10 4.1E-15 95.7 10.8 102 39-145 15-118 (174)
140 3g39_A Variable lymphocyte rec 99.2 1.6E-10 5.4E-15 94.6 10.7 102 39-145 12-115 (170)
141 3g39_A Variable lymphocyte rec 99.1 2.6E-10 8.9E-15 93.3 10.4 105 15-121 10-116 (170)
142 2r9u_A Variable lymphocyte rec 99.1 3.2E-10 1.1E-14 93.1 10.5 103 16-120 14-118 (174)
143 4fs7_A Uncharacterized protein 98.9 1.8E-07 6.2E-12 87.2 19.4 38 103-142 158-195 (394)
144 4fs7_A Uncharacterized protein 98.8 8.7E-08 3E-12 89.4 16.9 282 9-345 66-374 (394)
145 3un9_A NLR family member X1; l 98.8 6.1E-10 2.1E-14 102.9 1.6 34 84-117 155-193 (372)
146 2ifg_A High affinity nerve gro 98.8 1.4E-08 4.8E-13 93.0 10.3 98 19-117 13-113 (347)
147 2ifg_A High affinity nerve gro 98.8 1.5E-08 5E-13 92.9 10.1 94 3-97 20-116 (347)
148 3un9_A NLR family member X1; l 98.8 1.4E-09 4.7E-14 100.5 3.1 132 14-147 101-254 (372)
149 4gt6_A Cell surface protein; l 98.8 2.8E-07 9.7E-12 85.9 18.7 127 9-142 58-192 (394)
150 4gt6_A Cell surface protein; l 98.7 1.6E-06 5.6E-11 80.7 20.7 113 26-142 51-170 (394)
151 3e4g_A ATP synthase subunit S, 98.6 1.8E-08 6E-13 81.6 2.6 90 198-292 62-155 (176)
152 2ra8_A Uncharacterized protein 98.6 2.7E-07 9.1E-12 84.6 10.2 63 99-178 164-228 (362)
153 3e4g_A ATP synthase subunit S, 98.6 2E-08 6.8E-13 81.3 2.3 90 255-352 62-154 (176)
154 2ra8_A Uncharacterized protein 98.5 2.5E-07 8.6E-12 84.8 8.8 127 15-146 108-266 (362)
155 4h09_A Hypothetical leucine ri 98.5 3.2E-05 1.1E-09 71.4 22.7 128 7-142 39-168 (379)
156 1io0_A Tropomodulin; LRR prote 98.3 1E-06 3.5E-11 72.8 5.9 111 33-146 33-165 (185)
157 4h09_A Hypothetical leucine ri 98.2 0.00023 7.8E-09 65.6 20.7 260 9-321 64-341 (379)
158 1io0_A Tropomodulin; LRR prote 98.1 2.3E-06 8E-11 70.6 4.5 117 56-182 32-164 (185)
159 3rw6_A Nuclear RNA export fact 98.0 2.7E-06 9.1E-11 74.1 2.9 80 57-138 167-257 (267)
160 3rw6_A Nuclear RNA export fact 97.8 2.2E-05 7.4E-10 68.3 5.0 110 56-175 137-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 96.0 0.0083 2.8E-07 49.3 5.0 16 162-177 150-165 (197)
162 1pgv_A TMD-1, tropomodulin TMD 95.9 0.012 4.2E-07 48.2 6.0 109 33-144 38-169 (197)
163 3rfe_A Platelet glycoprotein I 95.4 0.028 9.6E-07 42.8 5.8 52 18-70 12-65 (130)
164 3rfe_A Platelet glycoprotein I 95.3 0.036 1.2E-06 42.2 6.3 36 108-144 32-67 (130)
165 2lz0_A Uncharacterized protein 56.2 16 0.00053 25.8 4.4 45 25-70 7-53 (100)
166 2lz0_A Uncharacterized protein 40.2 27 0.00091 24.6 3.5 44 48-93 8-52 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=5e-28 Score=223.65 Aligned_cols=308 Identities=16% Similarity=0.165 Sum_probs=243.2
Q ss_pred CCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCC
Q 044468 4 LTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNL 83 (396)
Q Consensus 4 l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l 83 (396)
+.++..+..++++++|+++++.+..++....+++|++|++++|.+..++. +..+++|++|++++| .++.++ .+.++
T Consensus 34 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l 109 (347)
T 4fmz_A 34 VTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNL 109 (347)
T ss_dssp TTSEECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTC
T ss_pred cCCcccchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCC
Confidence 44455566788999999999999988777889999999999999988876 899999999999999 777765 58899
Q ss_pred CcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhH
Q 044468 84 VSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVE 163 (396)
Q Consensus 84 ~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 163 (396)
++|++|++++|.++.++. +.++++|++|++++|.....++. +..+++|++|++.+|.+... .
T Consensus 110 ~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~---------------~ 171 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV---------------T 171 (347)
T ss_dssp TTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC---------------G
T ss_pred CcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCc---------------h
Confidence 999999999999998876 88999999999999866665554 88999999999999987763 2
Q ss_pred hhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccc
Q 044468 164 ELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGE 243 (396)
Q Consensus 164 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~ 243 (396)
.+..+++|+.|++..+....... +..+++|+.+++.++...... .+..+++|++|+++.+.+.++.. .
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~--~- 239 (347)
T 4fmz_A 172 PIANLTDLYSLSLNYNQIEDISP------LASLTSLHYFTAYVNQITDIT---PVANMTRLNSLKIGNNKITDLSP--L- 239 (347)
T ss_dssp GGGGCTTCSEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCGG--G-
T ss_pred hhccCCCCCEEEccCCccccccc------ccCCCccceeecccCCCCCCc---hhhcCCcCCEEEccCCccCCCcc--h-
Confidence 27888999999998887765543 445666999999876433222 26788999999999887775432 1
Q ss_pred ccccccccccccCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCC
Q 044468 244 VKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGL 323 (396)
Q Consensus 244 ~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 323 (396)
..+++|++|++.+|.++.++.+..+++|++|++++|. ++++ . ....+++|+.|++++|
T Consensus 240 -------~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~-~-------------~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 240 -------ANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQ-ISDI-S-------------VLNNLSQLNSLFLNNN 297 (347)
T ss_dssp -------TTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCC-G-------------GGGGCTTCSEEECCSS
T ss_pred -------hcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCc-cCCC-h-------------hhcCCCCCCEEECcCC
Confidence 1789999999999988888888889999999999885 5544 1 4567899999999998
Q ss_pred cccccccCCCCCCCCcceEEeccCcccccCCCCCCCCCCCceEEeeh
Q 044468 324 QNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQ 370 (396)
Q Consensus 324 ~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~~~ 370 (396)
.--...+.....+++|+.|++.+|+ ++.+|+ ....+.++.+...
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG--GGGCTTCSEESSS
T ss_pred cCCCcChhHhhccccCCEEEccCCc-cccccC--hhhhhccceeehh
Confidence 5333333345568999999999986 777766 2333566665533
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2.6e-27 Score=218.86 Aligned_cols=291 Identities=15% Similarity=0.195 Sum_probs=236.5
Q ss_pred CCCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccccc
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL 81 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~ 81 (396)
.++..++.+..+++|++|++++|.+..++....+++|++|++++|.+..++. +..+++|++|++++| .+..++. +.
T Consensus 54 ~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~~~~~-~~ 129 (347)
T 4fmz_A 54 EKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NISDISP-LA 129 (347)
T ss_dssp SCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCCCCGG-GT
T ss_pred CccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-cccCchh-hc
Confidence 3566778889999999999999999988767899999999999999988764 899999999999999 7777766 88
Q ss_pred CCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhh
Q 044468 82 NLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVL 161 (396)
Q Consensus 82 ~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 161 (396)
.+++|++|++++|.....+..+..+++|++|++++|. ...++. +..+++|++|++.+|.+...
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~~-------------- 192 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIEDI-------------- 192 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCCC--------------
T ss_pred cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccccc--------------
Confidence 9999999999999544344458999999999999984 444444 78999999999999988763
Q ss_pred hHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecc
Q 044468 162 VEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDA 241 (396)
Q Consensus 162 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~ 241 (396)
..+..+++|+.+++..+....... +..+++|+.|+++++.-..... +..+++|++|+++.+.+.++. .
T Consensus 193 -~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~--~ 260 (347)
T 4fmz_A 193 -SPLASLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDIN--A 260 (347)
T ss_dssp -GGGGGCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG--G
T ss_pred -ccccCCCccceeecccCCCCCCch------hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCCCh--h
Confidence 237889999999999887765543 4456679999999865433222 778899999999988887642 1
Q ss_pred ccccccccccccccCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeecc
Q 044468 242 GEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILE 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 321 (396)
. ..+++|++|++++|.+++++.+..+++|++|++++|. +..... ..+..+++|++|+++
T Consensus 261 ~--------~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 261 V--------KDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQ-LGNEDM------------EVIGGLTNLTTLFLS 319 (347)
T ss_dssp G--------TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCGGGH------------HHHHTCTTCSEEECC
T ss_pred H--------hcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCc-CCCcCh------------hHhhccccCCEEEcc
Confidence 1 2789999999999999988888999999999999986 433322 145679999999999
Q ss_pred CCcccccccCCCCCCCCcceEEeccCc
Q 044468 322 GLQNLKSIHSSYLPFPRLKEICVWKCA 348 (396)
Q Consensus 322 ~~~~l~~~~~~~~~~~~L~~L~i~~c~ 348 (396)
+|+ +..++. ...+++|+.|++.+|+
T Consensus 320 ~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 320 QNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp SSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred CCc-cccccC-hhhhhccceeehhhhc
Confidence 996 665544 6679999999999985
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=7.8e-27 Score=223.59 Aligned_cols=328 Identities=20% Similarity=0.192 Sum_probs=227.9
Q ss_pred CCCCCCCccCCCccccEEEccccccccc-cCC-CCCCCCcEEEccCCccC-ccChHHHhcCccccEEEeecCCCCccc-c
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNL-TET-PTCPHLRALFLHSNHLG-TVSNNFFHSMASLRVLIFLYNRSLENL-P 77 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l-~~~-~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l-~ 77 (396)
.+++.+|.+ .+++++|++++|.+..+ +.. ..+++|++|++++|.+. .++...+..+++|++|++++| .+..+ |
T Consensus 20 ~~l~~lp~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 96 (455)
T 3v47_A 20 RGLHQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLET 96 (455)
T ss_dssp SCCSSCCCC--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECT
T ss_pred CCcccCCCC--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccCh
Confidence 466777763 37899999999999986 444 89999999999999885 676665899999999999999 55544 7
Q ss_pred ccccCCCcCCEEEccCCCCCc-cchh--hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhc
Q 044468 78 LGILNLVSLQHLDLSWTGITT-LPIE--LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRIL 154 (396)
Q Consensus 78 ~~l~~l~~L~~L~l~~~~l~~-l~~~--l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 154 (396)
..++++++|++|++++|.++. .+.. +.++++|++|++++|......|...+..+++|++|++.+|.+...
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~------- 169 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI------- 169 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC-------
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc-------
Confidence 789999999999999999884 4444 889999999999999666655666588999999999999988764
Q ss_pred cCCchhhhHhhh----------------------------------cCCCCcEEEEEecccchhhhhhhccCCCCCcccc
Q 044468 155 FGDSEVLVEELL----------------------------------ALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQ 200 (396)
Q Consensus 155 ~~~~~~~~~~l~----------------------------------~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~ 200 (396)
....+. .+++|+.|+++.+.......... ......++|+
T Consensus 170 ------~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~~~~~~~L~ 242 (455)
T 3v47_A 170 ------CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF-FDAIAGTKIQ 242 (455)
T ss_dssp ------CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH-HHHTTTCCEE
T ss_pred ------ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh-hcccccccee
Confidence 122222 22344444444443321110000 0000112355
Q ss_pred eEEecccCCCcc---------cchhhhh--ccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecC
Q 044468 201 SLCLRHLNNSNL---------LSAFSFA--SLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHA 269 (396)
Q Consensus 201 ~L~l~~~~~~~~---------~~~~~l~--~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l 269 (396)
.|.+.++..... .....+. .+++|+.|+++.+.+..+..... +.+++|++|++++|.++.+
T Consensus 243 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF--------SHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp EEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT--------TTCTTCCEEECTTSCCCEE
T ss_pred eEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhc--------ccCCCCCEEECCCCccccc
Confidence 555543321110 0000111 12577778887777665433222 2688999999999977775
Q ss_pred C--ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccc-cCCCCCCCCcceEEecc
Q 044468 270 T--WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSI-HSSYLPFPRLKEICVWK 346 (396)
Q Consensus 270 ~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~ 346 (396)
+ .++.+++|++|+++++. +..+.. ..+..+++|++|+++++. +..+ +.....+++|+.|++.+
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNF-LGSIDS------------RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCEECG------------GGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred ChhHhcCcccCCEEECCCCc-cCCcCh------------hHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCC
Confidence 4 47789999999999885 555532 145678999999999984 5554 55667789999999998
Q ss_pred CcccccCCCCCCCCCCCceEEee
Q 044468 347 CAELKKLPLDCNQGLEQKIIIKG 369 (396)
Q Consensus 347 c~~L~~lp~~~~~~~~~l~~~~~ 369 (396)
+ +++.+|.......+.++.+..
T Consensus 381 N-~l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 381 N-QLKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp S-CCSCCCTTTTTTCTTCCEEEC
T ss_pred C-ccccCCHhHhccCCcccEEEc
Confidence 6 688898877666677777753
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=2.9e-27 Score=235.39 Aligned_cols=335 Identities=12% Similarity=0.136 Sum_probs=237.7
Q ss_pred CC-ccCCCccccEEEcccccccc------------------ccCC-C--CCCCCcEEEccCCcc-CccChHHHhcCcccc
Q 044468 7 AP-RIGMWKEITRMSLMQNAIQN------------------LTET-P--TCPHLRALFLHSNHL-GTVSNNFFHSMASLR 63 (396)
Q Consensus 7 ~~-~~~~~~~L~~L~l~~~~~~~------------------l~~~-~--~~~~L~~L~l~~~~~-~~~~~~~~~~l~~L~ 63 (396)
+| .++++++|++|++++|.+++ +|.. . ++++|++|++++|.+ ..+|.. +.++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCC
Confidence 44 58889999999999999998 8887 7 899999999999976 467766 89999999
Q ss_pred EEEeecCCCCc--cccccccCC------CcCCEEEccCCCCCccch--hhhcCCcccEEecccccCCCCCCcchhcCCCc
Q 044468 64 VLIFLYNRSLE--NLPLGILNL------VSLQHLDLSWTGITTLPI--ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKM 133 (396)
Q Consensus 64 ~L~l~~~~~~~--~l~~~l~~l------~~L~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~ 133 (396)
+|++++|..++ .+|..++++ ++|++|++++|.++.+|. .+.++++|++|++++|...+.+| . ++.+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCC
Confidence 99999994255 588877776 999999999999999998 89999999999999986665788 4 888999
Q ss_pred ccEEEeeccCccchhccchhccCCchhhhHhhhcCCC-CcEEEEEecccchhhhhhhc---------------------c
Q 044468 134 LRALRMFECGFKVEQEADRILFGDSEVLVEELLALKH-LNLLTVTLQIFGALQRLLNY---------------------C 191 (396)
Q Consensus 134 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---------------------~ 191 (396)
|++|++++|.+.. ....+..+++ |+.|+++.+....++..... .
T Consensus 355 L~~L~L~~N~l~~--------------lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 355 LASLNLAYNQITE--------------IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp ESEEECCSSEEEE--------------CCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred CCEEECCCCcccc--------------ccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 9999999987764 3344666666 77777666665443321100 0
Q ss_pred CCC-------CCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCc
Q 044468 192 NSS-------RSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYS 264 (396)
Q Consensus 192 ~l~-------~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 264 (396)
.+. ++++|+.|+++++.-. ......+..+++|++|+++.+.+..+....... ..+.-..+++|++|++++|
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD-ENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE-TTEECTTGGGCCEEECCSS
T ss_pred hhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc-ccccccccCCccEEECcCC
Confidence 111 3345666666654322 222223445677777777766666443322110 0000012348999999999
Q ss_pred eeecCCc-cC--CCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCC------cccccccCCCCC
Q 044468 265 KFRHATW-LV--LAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGL------QNLKSIHSSYLP 335 (396)
Q Consensus 265 ~l~~l~~-l~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------~~l~~~~~~~~~ 335 (396)
.++.++. +. .+++|++|+++++. ++.++. .+..+++|+.|+++++ .-...++.....
T Consensus 499 ~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~-------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 499 KLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPT-------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp CCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCC-------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred cCCccChhhhhccCCCcCEEECCCCC-CCCcCh-------------hhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 7777765 43 78999999999876 444433 5567899999999653 334566777778
Q ss_pred CCCcceEEeccCcccccCCCCCCCCCCCceEEeehHHHHHhhc
Q 044468 336 FPRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQDRWWNELQ 378 (396)
Q Consensus 336 ~~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~~~~~~~~~~~ 378 (396)
+++|+.|++++|. +..+|.... +.++.+....+.+..++
T Consensus 565 l~~L~~L~Ls~N~-l~~ip~~~~---~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 565 CPSLTQLQIGSND-IRKVNEKIT---PNISVLDIKDNPNISID 603 (636)
T ss_dssp CSSCCEEECCSSC-CCBCCSCCC---TTCCEEECCSCTTCEEE
T ss_pred CCCCCEEECCCCc-CCccCHhHh---CcCCEEECcCCCCcccc
Confidence 9999999999985 689998754 56777766655554443
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=5.7e-26 Score=218.91 Aligned_cols=304 Identities=21% Similarity=0.232 Sum_probs=223.0
Q ss_pred CCCCCCCccCCCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL- 78 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~- 78 (396)
.+++.+|. .-.+++++|++++|.+..++. . ..+++|++|++++|.+..+.+..+..+++|++|++++| .++.+|.
T Consensus 21 ~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 98 (477)
T 2id5_A 21 KRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLG 98 (477)
T ss_dssp CCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTT
T ss_pred CCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcc
Confidence 45666663 223589999999999988644 3 88999999999999888775555889999999999999 7777764
Q ss_pred cccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468 79 GILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGD 157 (396)
Q Consensus 79 ~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 157 (396)
.+.++++|++|++++|.+..+ +..+.++++|++|++++|......+.. +..+++|++|++.+|.+...
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~---------- 167 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCNLTSI---------- 167 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCCCSSC----------
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh-ccCCCCCCEEECCCCcCccc----------
Confidence 467899999999999988855 456888999999999998544433434 88899999999999988764
Q ss_pred chhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecccccee
Q 044468 158 SEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL 237 (396)
Q Consensus 158 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l 237 (396)
....+.++++|+.|++..+....... ..+.++++|+.|++.++......... .....+|++|+++.+.++.+
T Consensus 168 ---~~~~l~~l~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 168 ---PTEALSHLHGLIVLRLRHLNINAIRD----YSFKRLYRLKVLEISHWPYLDTMTPN-CLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp ---CHHHHTTCTTCCEEEEESCCCCEECT----TCSCSCTTCCEEEEECCTTCCEECTT-TTTTCCCSEEEEESSCCCSC
T ss_pred ---ChhHhcccCCCcEEeCCCCcCcEeCh----hhcccCcccceeeCCCCccccccCcc-cccCccccEEECcCCccccc
Confidence 45667888999999999887755432 34566777899999886654443322 22334888888887777654
Q ss_pred eeccccccccccccccccCcEeEEeCceeecCCc--cCCCCCccEEeeccccccceeecccccccchhccccccccccCc
Q 044468 238 NIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW--LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRL 315 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 315 (396)
..... ..+++|++|++++|.++.++. +..+++|++|+++++. +..+.. ..+..+++|
T Consensus 240 ~~~~~--------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~~~~l~~L 298 (477)
T 2id5_A 240 PYLAV--------RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEP------------YAFRGLNYL 298 (477)
T ss_dssp CHHHH--------TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECT------------TTBTTCTTC
T ss_pred CHHHh--------cCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECH------------HHhcCcccC
Confidence 43221 167888888888887766543 6778888888888775 454432 144567888
Q ss_pred ceeeccCCcccccccCC-CCCCCCcceEEeccCc
Q 044468 316 EYLILEGLQNLKSIHSS-YLPFPRLKEICVWKCA 348 (396)
Q Consensus 316 ~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 348 (396)
+.|+++++ .+..++.. ...+++|+.|++.+++
T Consensus 299 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 299 RVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 88888887 46665543 3457888888887665
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.3e-25 Score=222.79 Aligned_cols=143 Identities=22% Similarity=0.289 Sum_probs=111.2
Q ss_pred CCCCCCCccCCCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cc
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PL 78 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~ 78 (396)
.+++.+|. .-.+++++|++++|.+..++. . .++++|++|++++|.+..+++..|..+++|++|++++| .+..+ |.
T Consensus 21 ~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~ 98 (606)
T 3vq2_A 21 QKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPG 98 (606)
T ss_dssp SCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTT
T ss_pred CCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChh
Confidence 45667764 223688899999998888655 3 78889999999988888776655888899999999988 56555 67
Q ss_pred cccCCCcCCEEEccCCCCCccc-hhhhcCCcccEEecccccCCC-CCCcchhcCCCcccEEEeeccCccch
Q 044468 79 GILNLVSLQHLDLSWTGITTLP-IELKYLVNLKCLNLEYTFCLS-RIPQPVISDLKMLRALRMFECGFKVE 147 (396)
Q Consensus 79 ~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~-~~~~~~i~~l~~L~~L~l~~~~~~~~ 147 (396)
.++++++|++|++++|.++.++ ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+...
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceec
Confidence 7888889999999888888666 557888889999988885544 45666 88888888888888876553
No 7
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=3.6e-26 Score=219.54 Aligned_cols=135 Identities=17% Similarity=0.345 Sum_probs=86.3
Q ss_pred CCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccC
Q 044468 3 GLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILN 82 (396)
Q Consensus 3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~ 82 (396)
++..++.+..+++|++|++++|.+..++....+++|++|++++|.+..+++ +..+++|++|++++| .+..++. +.+
T Consensus 57 ~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-~~~ 132 (466)
T 1o6v_A 57 GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDIDP-LKN 132 (466)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTT
T ss_pred CCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCChH-HcC
Confidence 455566677777777777777777776555677777777777777766655 677777777777777 5665554 667
Q ss_pred CCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468 83 LVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV 146 (396)
Q Consensus 83 l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~ 146 (396)
+++|++|++++|.++.++. +.++++|++|+++++ ...++. ++.+++|++|++++|.+..
T Consensus 133 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCEEECCCCccCCChh-hccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCCC
Confidence 7777777777776665542 455555555555321 112221 5556666666666665544
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=6.3e-26 Score=212.92 Aligned_cols=287 Identities=17% Similarity=0.179 Sum_probs=205.7
Q ss_pred CCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCE
Q 044468 12 MWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQH 88 (396)
Q Consensus 12 ~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~ 88 (396)
.++++++++++++.+..++.. ..+++|++|++++|.+..++...+..+++|++|++++| .++.++ ..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence 357899999999999998875 78999999999999998887755899999999999999 666554 56889999999
Q ss_pred EEccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhc
Q 044468 89 LDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLA 167 (396)
Q Consensus 89 L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 167 (396)
|++++|.++.+|.. +.++++|++|++++|.... ++...++.+++|++|++.+|.++.. .+..
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~----------------~~~~ 184 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHV----------------DLSL 184 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBC----------------CGGG
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCcc----------------cccc
Confidence 99999999998877 4889999999999985544 4443488999999999999988763 2556
Q ss_pred CCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccc
Q 044468 168 LKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRI 247 (396)
Q Consensus 168 l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~ 247 (396)
+++|+.+++..+....+. ..++|+.|++.++.-.. .. ...+++|+.|+++.+.+.+.. ..
T Consensus 185 l~~L~~L~l~~n~l~~~~---------~~~~L~~L~l~~n~l~~-~~---~~~~~~L~~L~l~~n~l~~~~--~l----- 244 (390)
T 3o6n_A 185 IPSLFHANVSYNLLSTLA---------IPIAVEELDASHNSINV-VR---GPVNVELTILKLQHNNLTDTA--WL----- 244 (390)
T ss_dssp CTTCSEEECCSSCCSEEE---------CCSSCSEEECCSSCCCE-EE---CCCCSSCCEEECCSSCCCCCG--GG-----
T ss_pred ccccceeecccccccccC---------CCCcceEEECCCCeeee-cc---ccccccccEEECCCCCCcccH--HH-----
Confidence 677888887776654332 12237777776643222 11 122456777777766665431 11
Q ss_pred ccccccccCcEeEEeCceeecC--CccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcc
Q 044468 248 RETRGFHSLQKVYINYSKFRHA--TWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQN 325 (396)
Q Consensus 248 ~~~~~~~~L~~L~l~~~~l~~l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 325 (396)
+.+++|++|++++|.++.+ ..++.+++|++|+++++. ++.+.. ....+++|+.|+++++ .
T Consensus 245 ---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------------~~~~l~~L~~L~L~~n-~ 306 (390)
T 3o6n_A 245 ---LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNL-------------YGQPIPTLKVLDLSHN-H 306 (390)
T ss_dssp ---GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEEC-------------SSSCCTTCCEEECCSS-C
T ss_pred ---cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCc-------------ccCCCCCCCEEECCCC-c
Confidence 1567777777777755553 335667777777777664 444432 3345677777777776 4
Q ss_pred cccccCCCCCCCCcceEEeccCcccccCCC
Q 044468 326 LKSIHSSYLPFPRLKEICVWKCAELKKLPL 355 (396)
Q Consensus 326 l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~ 355 (396)
+..++.....+++|+.|++.+++ ++.+|.
T Consensus 307 l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~ 335 (390)
T 3o6n_A 307 LLHVERNQPQFDRLENLYLDHNS-IVTLKL 335 (390)
T ss_dssp CCCCGGGHHHHTTCSEEECCSSC-CCCCCC
T ss_pred ceecCccccccCcCCEEECCCCc-cceeCc
Confidence 55665555566777777777764 666653
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.6e-26 Score=234.60 Aligned_cols=334 Identities=13% Similarity=0.120 Sum_probs=238.5
Q ss_pred CC-ccCCCccccEEEcccccccc------------------ccCC-C--CCCCCcEEEccCCcc-CccChHHHhcCcccc
Q 044468 7 AP-RIGMWKEITRMSLMQNAIQN------------------LTET-P--TCPHLRALFLHSNHL-GTVSNNFFHSMASLR 63 (396)
Q Consensus 7 ~~-~~~~~~~L~~L~l~~~~~~~------------------l~~~-~--~~~~L~~L~l~~~~~-~~~~~~~~~~l~~L~ 63 (396)
+| .++++++|++|++++|.+.. +|.. . .+++|+.|++++|.+ ..+|.. +.++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCC
Confidence 54 58889999999999999998 8887 6 899999999999976 577766 89999999
Q ss_pred EEEeecCCCCc--cccccccCCC-------cCCEEEccCCCCCccch--hhhcCCcccEEecccccCCCCCCcchhcCCC
Q 044468 64 VLIFLYNRSLE--NLPLGILNLV-------SLQHLDLSWTGITTLPI--ELKYLVNLKCLNLEYTFCLSRIPQPVISDLK 132 (396)
Q Consensus 64 ~L~l~~~~~~~--~l~~~l~~l~-------~L~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~ 132 (396)
+|++++|..++ .+|..+++++ +|++|++++|.++.+|. .+.++++|++|++++|.+. .+| . ++.++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-A-FGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-CCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-h-hcCCC
Confidence 99999994255 4777666655 99999999999999998 8999999999999998555 788 4 89999
Q ss_pred cccEEEeeccCccchhccchhccCCchhhhHhhhcCCC-CcEEEEEecccchhhhhhhcc--------------------
Q 044468 133 MLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKH-LNLLTVTLQIFGALQRLLNYC-------------------- 191 (396)
Q Consensus 133 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~-------------------- 191 (396)
+|++|++++|.+.. ....+..+++ |+.|++..+....++......
T Consensus 596 ~L~~L~Ls~N~l~~--------------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 596 KLTDLKLDYNQIEE--------------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp EESEEECCSSCCSC--------------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred cceEEECcCCcccc--------------chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence 99999999998774 3345666777 777777777665443211100
Q ss_pred CC----C--CCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCce
Q 044468 192 NS----S--RSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSK 265 (396)
Q Consensus 192 ~l----~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 265 (396)
.+ . .+++|+.|+++++.-. ..+...+..+++|+.|+++.|.+..+...... +..+.-..+++|++|++++|.
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~-~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLK-PKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSS-CTTSCCTTGGGCCEEECCSSC
T ss_pred cchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhc-cccccccccCCccEEECCCCC
Confidence 00 0 1224666666554322 22222234567788888877777644332211 000000134589999999998
Q ss_pred eecCCc-cC--CCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCc------ccccccCCCCCC
Q 044468 266 FRHATW-LV--LAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQ------NLKSIHSSYLPF 336 (396)
Q Consensus 266 l~~l~~-l~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~~~~~~~~~ 336 (396)
++.++. +. .+++|+.|+++++. ++.++. .+..+++|+.|++++++ -...++.....+
T Consensus 740 L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~-------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 740 LTSLSDDFRATTLPYLSNMDVSYNC-FSSFPT-------------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp CCCCCGGGSTTTCTTCCEEECCSSC-CSSCCC-------------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred CccchHHhhhccCCCcCEEEeCCCC-CCccch-------------hhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 877765 43 78999999999875 444432 55679999999997743 344566677789
Q ss_pred CCcceEEeccCcccccCCCCCCCCCCCceEEeehHHHHHhhc
Q 044468 337 PRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQDRWWNELQ 378 (396)
Q Consensus 337 ~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~~~~~~~~~~~ 378 (396)
++|+.|++.+|. +..+|.... +.++.+....+.+..++
T Consensus 806 ~~L~~L~Ls~N~-L~~Ip~~l~---~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 806 PSLIQLQIGSND-IRKVDEKLT---PQLYILDIADNPNISID 843 (876)
T ss_dssp SSCCEEECCSSC-CCBCCSCCC---SSSCEEECCSCTTCEEE
T ss_pred CCCCEEECCCCC-CCccCHhhc---CCCCEEECCCCCCCccC
Confidence 999999999985 699998754 46777766555444443
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=5.1e-25 Score=216.98 Aligned_cols=142 Identities=23% Similarity=0.283 Sum_probs=102.7
Q ss_pred CCCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-c
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-L 78 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~ 78 (396)
.+++.+|. .-.+++++|++++|.+..++.. ..+++|++|++++|.+..+++..+..+++|++|++++| .+..++ .
T Consensus 17 ~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 94 (570)
T 2z63_A 17 LNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALG 94 (570)
T ss_dssp SCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTT
T ss_pred CCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHh
Confidence 45666664 2235688888888888776543 77888888888888887776655788888888888888 565554 5
Q ss_pred cccCCCcCCEEEccCCCCCccch-hhhcCCcccEEecccccCCC-CCCcchhcCCCcccEEEeeccCccc
Q 044468 79 GILNLVSLQHLDLSWTGITTLPI-ELKYLVNLKCLNLEYTFCLS-RIPQPVISDLKMLRALRMFECGFKV 146 (396)
Q Consensus 79 ~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~-~~~~~~i~~l~~L~~L~l~~~~~~~ 146 (396)
.++++++|++|++++|.++.++. .++++++|++|++++|.... .+|.. ++++++|++|++.+|.+..
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccce
Confidence 67788888888888887776665 47778888888888874443 35665 7778888888888776554
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.9e-26 Score=229.54 Aligned_cols=184 Identities=13% Similarity=0.210 Sum_probs=145.8
Q ss_pred cccCC-CCCCCCcEEEccCCccCc------------------cChHHHh--cCccccEEEeecCCCCccccccccCCCcC
Q 044468 28 NLTET-PTCPHLRALFLHSNHLGT------------------VSNNFFH--SMASLRVLIFLYNRSLENLPLGILNLVSL 86 (396)
Q Consensus 28 ~l~~~-~~~~~L~~L~l~~~~~~~------------------~~~~~~~--~l~~L~~L~l~~~~~~~~l~~~l~~l~~L 86 (396)
++|.. .++++|++|++++|.+.. +|.. +. ++++|++|++++|...+.+|..++++++|
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 35555 789999999999999876 8887 77 99999999999996677889999999999
Q ss_pred CEEEccCCC-CC--ccchhhhcC------CcccEEecccccCCCCCCc--chhcCCCcccEEEeeccCccchhccchhcc
Q 044468 87 QHLDLSWTG-IT--TLPIELKYL------VNLKCLNLEYTFCLSRIPQ--PVISDLKMLRALRMFECGFKVEQEADRILF 155 (396)
Q Consensus 87 ~~L~l~~~~-l~--~l~~~l~~l------~~L~~L~l~~~~~~~~~~~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 155 (396)
++|++++|. ++ .+|..++.+ ++|++|++++|... .+|. . ++.+++|++|++.+|.+.+.
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~-l~~l~~L~~L~L~~N~l~g~-------- 345 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS-LQKMKKLGMLECLYNQLEGK-------- 345 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH-HTTCTTCCEEECCSCCCEEE--------
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh-hccCCCCCEEeCcCCcCccc--------
Confidence 999999997 88 488888876 99999999998655 8887 5 99999999999999998842
Q ss_pred CCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcc-cceEEecccCCCcccchhhhhc--cccccceeeecc
Q 044468 156 GDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSIN-TQSLCLRHLNNSNLLSAFSFAS--LRHLWTLHLYFN 232 (396)
Q Consensus 156 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~ 232 (396)
.. .+..+++|+.|++..+....++ ..+.++++ |+.|+++++.-. ..+ ..+.. +++|+.|+++.+
T Consensus 346 -----ip-~~~~l~~L~~L~L~~N~l~~lp-----~~l~~l~~~L~~L~Ls~N~l~-~lp-~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 346 -----LP-AFGSEIKLASLNLAYNQITEIP-----ANFCGFTEQVENLSFAHNKLK-YIP-NIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp -----CC-CCEEEEEESEEECCSSEEEECC-----TTSEEECTTCCEEECCSSCCS-SCC-SCCCTTCSSCEEEEECCSS
T ss_pred -----hh-hhCCCCCCCEEECCCCcccccc-----HhhhhhcccCcEEEccCCcCc-ccc-hhhhhcccCccCEEECcCC
Confidence 33 7888899999999988876443 33566777 888888876533 221 12222 347777777766
Q ss_pred ccc
Q 044468 233 DFE 235 (396)
Q Consensus 233 ~i~ 235 (396)
.+.
T Consensus 413 ~l~ 415 (636)
T 4eco_A 413 EIG 415 (636)
T ss_dssp CTT
T ss_pred cCC
Confidence 654
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=9e-26 Score=221.35 Aligned_cols=180 Identities=22% Similarity=0.247 Sum_probs=128.9
Q ss_pred CCCCCCCccCCCccccEEEcccccccccc-CC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNLT-ET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL- 78 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~- 78 (396)
.+++.+|. .-.+++++|++++|.+..++ .. ..+++|++|++++|.+..+++..+..+++|++|++++| .+..++.
T Consensus 15 ~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 92 (549)
T 2z81_A 15 RSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSS 92 (549)
T ss_dssp SCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHH
T ss_pred Cccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHH
Confidence 35666664 22368999999999988854 33 88999999999999888777655889999999999999 6666654
Q ss_pred cccCCCcCCEEEccCCCCCc--cchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccc-----
Q 044468 79 GILNLVSLQHLDLSWTGITT--LPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEAD----- 151 (396)
Q Consensus 79 ~l~~l~~L~~L~l~~~~l~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~----- 151 (396)
.++++++|++|++++|.++. .|..+.++++|++|++++|.....++...+..+++|++|++.+|.+.+.....
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence 48889999999999998874 45678889999999999886567776544888999999999988876531000
Q ss_pred -----hhccCCchhh-hHhhhcCCCCcEEEEEecccch
Q 044468 152 -----RILFGDSEVL-VEELLALKHLNLLTVTLQIFGA 183 (396)
Q Consensus 152 -----~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~ 183 (396)
.+........ ...+..+++|+.|++..+....
T Consensus 173 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 0001111111 1123457788888887766543
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=1.3e-25 Score=222.75 Aligned_cols=334 Identities=18% Similarity=0.168 Sum_probs=204.3
Q ss_pred ccCCCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCc
Q 044468 9 RIGMWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVS 85 (396)
Q Consensus 9 ~~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~ 85 (396)
.|.++++|++|++++|.+..++. . ..+++|++|++++|.+..+++..+..+++|++|++++| .+..++ ..++++++
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLIT 129 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTT
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccccccccccCCCCC
Confidence 47788888888888888888643 3 78888888888888887764444888888888888888 565554 56788888
Q ss_pred CCEEEccCCCCC--ccchhhhcCCcccEEecccccCCCCCCcchhcC---------------------------CCcccE
Q 044468 86 LQHLDLSWTGIT--TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISD---------------------------LKMLRA 136 (396)
Q Consensus 86 L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~---------------------------l~~L~~ 136 (396)
|++|++++|.+. .+|..++++++|++|++++|......+.. ++. ..+|++
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~ 208 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND-LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT-THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh-hhhhhccccccceeeccCCCcceeCcccccCceeee
Confidence 888888888776 46778888888888888877433221111 111 113444
Q ss_pred EEeeccCcc-----------------------------------------------------------------------
Q 044468 137 LRMFECGFK----------------------------------------------------------------------- 145 (396)
Q Consensus 137 L~l~~~~~~----------------------------------------------------------------------- 145 (396)
|++.+|.+.
T Consensus 209 L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~ 288 (606)
T 3vq2_A 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288 (606)
T ss_dssp EEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCS
T ss_pred eeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCC
Confidence 444444321
Q ss_pred --------------------------------chhcc-------chhccCCchhhhHhhhcCCCCcEEEEEecccchhh-
Q 044468 146 --------------------------------VEQEA-------DRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQ- 185 (396)
Q Consensus 146 --------------------------------~~~~~-------~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~- 185 (396)
..+.. ..+..... .....+..+++|+.|+++.+......
T Consensus 289 ~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~ 367 (606)
T 3vq2_A 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKG-SISFKKVALPSLSYLDLSRNALSFSGC 367 (606)
T ss_dssp EEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSS-CEECCCCCCTTCCEEECCSSCEEEEEE
T ss_pred EEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcC-ccchhhccCCCCCEEECcCCccCCCcc
Confidence 00000 00000000 00113445566666666655543221
Q ss_pred ---hhhhc-----------------cCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccc
Q 044468 186 ---RLLNY-----------------CNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVK 245 (396)
Q Consensus 186 ---~~~~~-----------------~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~ 245 (396)
.+... ..+.++++|+.|++.++.-........+..+++|+.|+++.+.+........
T Consensus 368 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--- 444 (606)
T 3vq2_A 368 CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF--- 444 (606)
T ss_dssp CCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT---
T ss_pred hhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh---
Confidence 00000 2234445566666655432222111235556666666666555543222111
Q ss_pred ccccccccccCcEeEEeCceeec--CC-ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccC
Q 044468 246 RIRETRGFHSLQKVYINYSKFRH--AT-WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEG 322 (396)
Q Consensus 246 ~~~~~~~~~~L~~L~l~~~~l~~--l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 322 (396)
+.+++|++|++.+|.+++ ++ .++.+++|++|++++|. ++.+.. ..+..+++|+.|++++
T Consensus 445 -----~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 445 -----LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISW------------GVFDTLHRLQLLNMSH 506 (606)
T ss_dssp -----TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECCS
T ss_pred -----cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccCh------------hhhcccccCCEEECCC
Confidence 267888888888886665 33 46778888888888875 444432 1456789999999999
Q ss_pred Ccccccc-cCCCCCCCCcceEEeccCcccccCCCCCCCCCCCceEEe
Q 044468 323 LQNLKSI-HSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIK 368 (396)
Q Consensus 323 ~~~l~~~-~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~ 368 (396)
|. +..+ +.....+++|+.|++++|. ++.+|.........++.+.
T Consensus 507 N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 507 NN-LLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFN 551 (606)
T ss_dssp SC-CSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEE
T ss_pred Cc-CCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEE
Confidence 85 5444 5667778999999999984 8899987444333466665
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=7.9e-25 Score=217.22 Aligned_cols=143 Identities=20% Similarity=0.155 Sum_probs=110.4
Q ss_pred CCCCCCCccCCCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcc-ccc
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLEN-LPL 78 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-l~~ 78 (396)
.+++.+|. .--+.+++|++++|.++.++. . ..+++|++|++++|.+..+.+..|..+++|++|++++| .+.. .|.
T Consensus 22 ~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 99 (606)
T 3t6q_A 22 LGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAET 99 (606)
T ss_dssp SCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTT
T ss_pred CCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChh
Confidence 45666663 113478999999999988643 4 88999999999999887775555889999999999999 5554 467
Q ss_pred cccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccch
Q 044468 79 GILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVE 147 (396)
Q Consensus 79 ~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~ 147 (396)
.++++++|++|++++|.++.+ +..+.++++|++|++++|......... +..+++|++|++.+|.+...
T Consensus 100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEE
T ss_pred hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCccccc
Confidence 788999999999999988876 456888999999999998544422122 45588999999999887764
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=6.9e-25 Score=210.64 Aligned_cols=306 Identities=18% Similarity=0.213 Sum_probs=176.7
Q ss_pred CCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccC
Q 044468 3 GLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILN 82 (396)
Q Consensus 3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~ 82 (396)
.+.+++.+..+++|++|++++|.+..++....+++|++|++++|.+..++. +..+++|++|++++| .+..++. ++.
T Consensus 79 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~ 154 (466)
T 1o6v_A 79 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-TISDISA-LSG 154 (466)
T ss_dssp CCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEE-EECCCGG-GTT
T ss_pred ccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCC-ccCCChh-hcc
Confidence 345555578888999999999988886656788899999999988877765 788888999998888 5555543 555
Q ss_pred CCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccch--------hc
Q 044468 83 LVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADR--------IL 154 (396)
Q Consensus 83 l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~--------~~ 154 (396)
+++|++|++++ .+..++. +.++++|++|++++|. ...++. +..+++|++|++.+|.+........ +.
T Consensus 155 l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 229 (466)
T 1o6v_A 155 LTSLQQLSFGN-QVTDLKP-LANLTTLERLDISSNK-VSDISV--LAKLTNLESLIATNNQISDITPLGILTNLDELSLN 229 (466)
T ss_dssp CTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred CCcccEeecCC-cccCchh-hccCCCCCEEECcCCc-CCCChh--hccCCCCCEEEecCCcccccccccccCCCCEEECC
Confidence 55555555542 2222222 4445555555555542 222221 4445555555555544433200000 00
Q ss_pred cCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecccc
Q 044468 155 FGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDF 234 (396)
Q Consensus 155 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 234 (396)
.... ..+..+..+++|+.|++..+....... +.++++|+.|+++++.-.... .+..+++|+.|+++.+.+
T Consensus 230 ~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l 299 (466)
T 1o6v_A 230 GNQL-KDIGTLASLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQISNIS---PLAGLTALTNLELNENQL 299 (466)
T ss_dssp SSCC-CCCGGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCC
T ss_pred CCCc-ccchhhhcCCCCCEEECCCCccccchh------hhcCCCCCEEECCCCccCccc---cccCCCccCeEEcCCCcc
Confidence 0000 001234455556656555555443322 334445666666554322111 145566666666665555
Q ss_pred ceeeeccccccccccccccccCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccC
Q 044468 235 EELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGR 314 (396)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (396)
+++.. - +.+++|++|++++|.++++++++.+++|++|++++|. ++.+ . .+..+++
T Consensus 300 ~~~~~---------~-~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~-~-------------~l~~l~~ 354 (466)
T 1o6v_A 300 EDISP---------I-SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK-VSDV-S-------------SLANLTN 354 (466)
T ss_dssp SCCGG---------G-GGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC-CCCC-G-------------GGTTCTT
T ss_pred cCchh---------h-cCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCc-cCCc-h-------------hhccCCC
Confidence 43221 1 1567777777777766666666677777777777764 3333 1 4456788
Q ss_pred cceeeccCCcccccccCCCCCCCCcceEEeccCcccccCCC
Q 044468 315 LEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPL 355 (396)
Q Consensus 315 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~ 355 (396)
|+.|++++|. +..+.. ...+++|+.|++.+|+ ++.+|.
T Consensus 355 L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-~~~~p~ 392 (466)
T 1o6v_A 355 INWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA-WTNAPV 392 (466)
T ss_dssp CCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE-EECCCB
T ss_pred CCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc-ccCCch
Confidence 8888888774 444333 5567888888888764 555444
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=3.7e-25 Score=213.27 Aligned_cols=308 Identities=19% Similarity=0.152 Sum_probs=242.2
Q ss_pred ccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccCC
Q 044468 16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSWT 94 (396)
Q Consensus 16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~ 94 (396)
-+.++.++++++.+|.. -.++++.|++++|.+..+++..+..+++|++|++++| .+..+ |..+.++++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTEEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC
Confidence 36788888888888764 2368999999999998886666999999999999999 66655 678999999999999999
Q ss_pred CCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468 95 GITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL 173 (396)
Q Consensus 95 ~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 173 (396)
.++.+|.. +.++++|++|++++|......+.. +..+++|++|++.+|.+... ....+.++++|+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~ 156 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYI-------------SHRAFSGLNSLEQ 156 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEEECCTTCCEE-------------CTTSSTTCTTCCE
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhH-ccccccCCEEECCCCcccee-------------ChhhccCCCCCCE
Confidence 99988865 689999999999998554444444 89999999999999988764 4567888999999
Q ss_pred EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecc-ccceeeeccccccccccccc
Q 044468 174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFN-DFEELNIDAGEVKRIRETRG 252 (396)
Q Consensus 174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~l~~~~~~~~~~~~~~~ 252 (396)
|++..+.....+. ..+.++++|+.|++.++.. .......+..+++|+.|+++.+ .+..+..... .
T Consensus 157 L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---------~ 222 (477)
T 2id5_A 157 LTLEKCNLTSIPT----EALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL---------Y 222 (477)
T ss_dssp EEEESCCCSSCCH----HHHTTCTTCCEEEEESCCC-CEECTTCSCSCTTCCEEEEECCTTCCEECTTTT---------T
T ss_pred EECCCCcCcccCh----hHhcccCCCcEEeCCCCcC-cEeChhhcccCcccceeeCCCCccccccCcccc---------c
Confidence 9999988765443 1245667799999988643 3333345778899999999944 4443332221 4
Q ss_pred cccCcEeEEeCceeecCC--ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccc-
Q 044468 253 FHSLQKVYINYSKFRHAT--WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSI- 329 (396)
Q Consensus 253 ~~~L~~L~l~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~- 329 (396)
..+|++|++++|.++.++ .+..+++|++|+++++. ++.+.. ..+..+++|+.|+++++. +..+
T Consensus 223 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~n~-l~~~~ 288 (477)
T 2id5_A 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG------------SMLHELLRLQEIQLVGGQ-LAVVE 288 (477)
T ss_dssp TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECT------------TSCTTCTTCCEEECCSSC-CSEEC
T ss_pred CccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccCh------------hhccccccCCEEECCCCc-cceEC
Confidence 459999999999888887 47889999999999886 555533 145678999999999984 5554
Q ss_pred cCCCCCCCCcceEEeccCcccccCCCCCCCCCCCceEEe
Q 044468 330 HSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIK 368 (396)
Q Consensus 330 ~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~ 368 (396)
+.....+++|+.|++.++ +++.+|.......+.++.+.
T Consensus 289 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 289 PYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLI 326 (477)
T ss_dssp TTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEE
T ss_pred HHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEE
Confidence 445667899999999998 69999987766656677664
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=5.6e-25 Score=214.29 Aligned_cols=134 Identities=23% Similarity=0.292 Sum_probs=109.8
Q ss_pred CCCCCCCc-cCCCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc
Q 044468 2 AGLTGAPR-IGMWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL 78 (396)
Q Consensus 2 ~~l~~~~~-~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~ 78 (396)
-+++.+|. +. +++++|++++|.+..++. . ..+++|++|++++|.+..+++..+..+++|++|++++| .++.+|.
T Consensus 10 n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~ 86 (520)
T 2z7x_B 10 NGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISC 86 (520)
T ss_dssp SCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEEC
T ss_pred CCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCc
Confidence 35666764 33 789999999999988653 3 88999999999999998775555899999999999999 7788887
Q ss_pred cccCCCcCCEEEccCCCCCc--cchhhhcCCcccEEecccccCCCCCCcchhcCCCcc--cEEEeeccCc
Q 044468 79 GILNLVSLQHLDLSWTGITT--LPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKML--RALRMFECGF 144 (396)
Q Consensus 79 ~l~~l~~L~~L~l~~~~l~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L--~~L~l~~~~~ 144 (396)
. .+++|++|++++|.++. +|..++++++|++|++++|.... . .+..+++| ++|++.+|.+
T Consensus 87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~-~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---S-SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---G-GGGGGTTSCEEEEEEEECTT
T ss_pred c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---h-hccccccceeeEEEeecccc
Confidence 6 79999999999999885 57889999999999999985433 2 26677777 9999988876
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=1.2e-25 Score=223.05 Aligned_cols=274 Identities=18% Similarity=0.157 Sum_probs=145.8
Q ss_pred HhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEecccccCCCCCCcchhcCCCcc
Q 044468 56 FHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKML 134 (396)
Q Consensus 56 ~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L 134 (396)
+..+++|++|++++| .++.+|..+.++++|++|++++|.++.+ |..+.++++|++|++++|.....++...++.+++|
T Consensus 274 ~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 445555555555555 4555555555555566666655555543 33455555566666555544444444335555666
Q ss_pred cEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccc
Q 044468 135 RALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLS 214 (396)
Q Consensus 135 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 214 (396)
++|++++|.+... ......+..+++|+.|++..+....... ..+.++++|+.|+++++.-.....
T Consensus 353 ~~L~l~~n~l~~~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 353 RELDLSHDDIETS-----------DCCNLQLRNLSHLQSLNLSYNEPLSLKT----EAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp CEEECCSSCCCEE-----------EESTTTTTTCTTCCEEECCSCSCEEECT----TTTTTCTTCSEEECTTCCEECCTT
T ss_pred CEEECCCCccccc-----------cCcchhcccCCCCCEEECCCCcCCcCCH----HHhcCCccCCeEECCCCcCCCccc
Confidence 6666665555442 0113345556666666666555432211 234445556666666543222211
Q ss_pred hhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeec--C---CccCCCCCccEEeecccccc
Q 044468 215 AFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRH--A---TWLVLAPRAKVIRISNCQRL 289 (396)
Q Consensus 215 ~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--l---~~l~~l~~L~~L~l~~~~~l 289 (396)
...+..+++|+.|+++.+.+........ +.+++|++|++++|.+++ + ..++.+++|++|++++|. +
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l 488 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSEQLF--------DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-L 488 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCTTTT--------TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-C
T ss_pred chhhhCcccCCEEECCCCccCCcCHHHH--------hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-c
Confidence 1224556666666666555543222111 156777777777775544 1 235567777777777664 4
Q ss_pred ceeecccccccchhccccccccccCcceeeccCCcccccccCCCCCCCCcceEEeccCcccccCCCCCCCCCCCceEEe
Q 044468 290 QEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLDCNQGLEQKIIIK 368 (396)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~ 368 (396)
+.+.. ..+..+++|+.|+++++.--...+.....+++| .|++.++ +++.+|+......+.++.+.
T Consensus 489 ~~~~~------------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 553 (606)
T 3t6q_A 489 SSIDQ------------HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTIN 553 (606)
T ss_dssp CEECT------------TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEE
T ss_pred CccCh------------hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEe
Confidence 44422 134567777777777774333334445556777 7777776 46666654433334445543
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.5e-25 Score=219.09 Aligned_cols=290 Identities=16% Similarity=0.207 Sum_probs=196.3
Q ss_pred CccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEE
Q 044468 13 WKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHL 89 (396)
Q Consensus 13 ~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L 89 (396)
+++++.+++.++.+..+|.. ..+++|++|++++|.+..+++..+..+++|++|++++| .+..+| ..++++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEE
Confidence 56889999999999888775 67899999999999998877655899999999999999 666555 457899999999
Q ss_pred EccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcC
Q 044468 90 DLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLAL 168 (396)
Q Consensus 90 ~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 168 (396)
++++|.++.+|.. +.++++|++|++++|.+....|.. ++.+++|++|++++|.+... .+..+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~----------------~~~~l 191 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHV----------------DLSLI 191 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEECTTSCCSBC----------------CGGGC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-hhcCCcCcEEECcCCCCCCc----------------Chhhh
Confidence 9999999988876 488999999999998555444444 88999999999999988763 13344
Q ss_pred CCCcEEEEEecccchhhhhhhcc------------CCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccce
Q 044468 169 KHLNLLTVTLQIFGALQRLLNYC------------NSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEE 236 (396)
Q Consensus 169 ~~L~~L~l~~~~~~~~~~~~~~~------------~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 236 (396)
+.|+.|++..+....+....... .....++|+.|+++++.-... ..+..+++|+.|+++.+.+..
T Consensus 192 ~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 192 PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp TTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCE
T ss_pred hhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCC
Confidence 55555555544432211100000 000113466666666432221 235667777777777666665
Q ss_pred eeeccccccccccccccccCcEeEEeCceeecCCc-cCCCCCccEEeeccccccceeecccccccchhccccccccccCc
Q 044468 237 LNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW-LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRL 315 (396)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 315 (396)
+..... +.+++|++|++++|.++.++. .+.+++|++|++++|. +..++. .+..+++|
T Consensus 269 ~~~~~~--------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~-------------~~~~l~~L 326 (597)
T 3oja_B 269 IMYHPF--------VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVER-------------NQPQFDRL 326 (597)
T ss_dssp EESGGG--------TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGG-------------GHHHHTTC
T ss_pred CCHHHh--------cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCc-------------ccccCCCC
Confidence 433222 156777777777776666544 3347777777777765 444432 34567777
Q ss_pred ceeeccCCcccccccCCCCCCCCcceEEeccCc
Q 044468 316 EYLILEGLQNLKSIHSSYLPFPRLKEICVWKCA 348 (396)
Q Consensus 316 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 348 (396)
++|++++|. +..++ ...+++|+.|++.+++
T Consensus 327 ~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 327 ENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp SEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred CEEECCCCC-CCCcC--hhhcCCCCEEEeeCCC
Confidence 777777763 44443 4456777777777654
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.1e-24 Score=214.23 Aligned_cols=134 Identities=26% Similarity=0.328 Sum_probs=98.4
Q ss_pred CCCCCCccCCCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccc
Q 044468 3 GLTGAPRIGMWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGI 80 (396)
Q Consensus 3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l 80 (396)
+++.+|. .-.+++++|++++|.+..++. . ..+++|++|++++|.+..++++.+..+++|++|++++| .++.+|..
T Consensus 42 ~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~- 118 (562)
T 3a79_B 42 NLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC- 118 (562)
T ss_dssp CCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC-
T ss_pred CCccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc-
Confidence 4556653 113678888888888888653 3 78888888888888887775555788888888888888 67777765
Q ss_pred cCCCcCCEEEccCCCCCccc--hhhhcCCcccEEecccccCCCCCCcchhcCCCcc--cEEEeeccCc
Q 044468 81 LNLVSLQHLDLSWTGITTLP--IELKYLVNLKCLNLEYTFCLSRIPQPVISDLKML--RALRMFECGF 144 (396)
Q Consensus 81 ~~l~~L~~L~l~~~~l~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L--~~L~l~~~~~ 144 (396)
.+++|++|++++|.++.++ ..++++++|++|++++|.... .. +..+++| ++|++.+|.+
T Consensus 119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESSC
T ss_pred -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecccc
Confidence 7888888888888887654 678888888888888874433 22 4444444 8888887766
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=3.4e-25 Score=217.29 Aligned_cols=132 Identities=19% Similarity=0.268 Sum_probs=107.1
Q ss_pred ccCCCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCc--cccccccCCC
Q 044468 9 RIGMWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE--NLPLGILNLV 84 (396)
Q Consensus 9 ~~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~l~~~l~~l~ 84 (396)
.|..+++|++|++++|.+..++. . ..+++|++|++++|.+..+++..+..+++|++|++++| .+. ..|..+++++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLT 123 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccC
Confidence 58889999999999999999654 4 88999999999999998888777899999999999999 666 3466788999
Q ss_pred cCCEEEccCCC-CCccc-hhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeecc
Q 044468 85 SLQHLDLSWTG-ITTLP-IELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFEC 142 (396)
Q Consensus 85 ~L~~L~l~~~~-l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~ 142 (396)
+|++|++++|. ++.+| ..+.++++|++|++++|......|.. ++.+++|++|++..+
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLS 182 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECS
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccC
Confidence 99999999996 66776 46888999999999988655545554 555555555554444
No 22
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=5.3e-25 Score=210.22 Aligned_cols=227 Identities=17% Similarity=0.133 Sum_probs=157.7
Q ss_pred CccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCC
Q 044468 8 PRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQ 87 (396)
Q Consensus 8 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~ 87 (396)
..++++++|++|++++|.+.+++....+++|++|++++|.+..++ +..+++|++|++++| .++.++ ++++++|+
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLT 109 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCC
T ss_pred cChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCC
Confidence 456678888888888888888765578888888888888887764 678888888888888 666664 77888888
Q ss_pred EEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhc
Q 044468 88 HLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLA 167 (396)
Q Consensus 88 ~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 167 (396)
+|++++|.++.++ +.++++|++|++++|... .++ ++.+++|++|++.+|...+. . .+..
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~~-------------~--~~~~ 168 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKITK-------------L--DVTP 168 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSCCS-CCC---CTTCTTCCEEECTTCSCCCC-------------C--CCTT
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCccc-eec---cccCCcCCEEECCCCCcccc-------------c--cccc
Confidence 8888888888775 778888888888887433 343 67788888888888754431 1 3566
Q ss_pred CCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccc
Q 044468 168 LKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRI 247 (396)
Q Consensus 168 l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~ 247 (396)
+++|+.|++..+....++ +.++++|+.|+++++.- .... +..+++|+.|+++.+.++.+.+
T Consensus 169 l~~L~~L~ls~n~l~~l~-------l~~l~~L~~L~l~~N~l-~~~~---l~~l~~L~~L~Ls~N~l~~ip~-------- 229 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITELD-------VSQNKLLNRLNCDTNNI-TKLD---LNQNIQLTFLDCSSNKLTEIDV-------- 229 (457)
T ss_dssp CTTCCEEECCSSCCCCCC-------CTTCTTCCEEECCSSCC-SCCC---CTTCTTCSEEECCSSCCSCCCC--------
T ss_pred CCcCCEEECCCCccceec-------cccCCCCCEEECcCCcC-Ceec---cccCCCCCEEECcCCcccccCc--------
Confidence 777777777777665532 44556677777766432 2222 5566777777777766665331
Q ss_pred ccccccccCcEeEEeCceeecCCccCCCCCccEEeec
Q 044468 248 RETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRIS 284 (396)
Q Consensus 248 ~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~ 284 (396)
+.+++|++|++++|.++.++ .+.+++|+.|+++
T Consensus 230 ---~~l~~L~~L~l~~N~l~~~~-~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 230 ---TPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCI 262 (457)
T ss_dssp ---TTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECT
T ss_pred ---cccCCCCEEEeeCCcCCCcC-HHHCCCCCEEecc
Confidence 15667777777777666554 3445555544443
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=2.9e-25 Score=218.75 Aligned_cols=346 Identities=17% Similarity=0.129 Sum_probs=221.2
Q ss_pred ccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCc
Q 044468 9 RIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVS 85 (396)
Q Consensus 9 ~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~ 85 (396)
.|..+++|++|++++|.+..++.. ..+++|++|++++|.+..+++..+..+++|++|++++| .+..++. .++++++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKT 125 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTT
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCcccccccc
Confidence 678899999999999999987543 78999999999999998887666899999999999999 7776664 6889999
Q ss_pred CCEEEccCCCCCc--cchhhhcCCcccEEecccccCCCCCCcchhcCCCcc----cEEEeeccCccchhccch-------
Q 044468 86 LQHLDLSWTGITT--LPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKML----RALRMFECGFKVEQEADR------- 152 (396)
Q Consensus 86 L~~L~l~~~~l~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L----~~L~l~~~~~~~~~~~~~------- 152 (396)
|++|++++|.++. +|..+.++++|++|++++|... .++...++.+++| +.+++.+|.+........
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~ 204 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhcccCCCCceecCHHHhccCccee
Confidence 9999999998874 7888999999999999998443 3332225555555 566666655443211000
Q ss_pred --hcc-----------------------------------------------------------CCchhhhHhhhcCCCC
Q 044468 153 --ILF-----------------------------------------------------------GDSEVLVEELLALKHL 171 (396)
Q Consensus 153 --~~~-----------------------------------------------------------~~~~~~~~~l~~l~~L 171 (396)
+.. .........+..+++|
T Consensus 205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence 000 0001112334455666
Q ss_pred cEEEEEecccchhhhhhh---------------------cc----------------CCCCCcccceEEecccCCCcccc
Q 044468 172 NLLTVTLQIFGALQRLLN---------------------YC----------------NSSRSINTQSLCLRHLNNSNLLS 214 (396)
Q Consensus 172 ~~L~l~~~~~~~~~~~~~---------------------~~----------------~l~~~~~L~~L~l~~~~~~~~~~ 214 (396)
+.|++..+....++.... .. ....+++|+.|+++++.-.....
T Consensus 285 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 364 (570)
T 2z63_A 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364 (570)
T ss_dssp SEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred cEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccc
Confidence 666666555433321110 00 01356778888887754322110
Q ss_pred -hhhhhccccccceeeeccccceeeeccccc--------------ccccc-c-cccccCcEeEEeCceeecC--CccCCC
Q 044468 215 -AFSFASLRHLWTLHLYFNDFEELNIDAGEV--------------KRIRE-T-RGFHSLQKVYINYSKFRHA--TWLVLA 275 (396)
Q Consensus 215 -~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~--------------~~~~~-~-~~~~~L~~L~l~~~~l~~l--~~l~~l 275 (396)
...+..+++|++|+++.+.+..+......- +..+. . ..+++|++|++++|.++.. ..+..+
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 444 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred ccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcC
Confidence 234677889999999877766554321100 00110 0 2344555555555533332 123445
Q ss_pred CCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccc-cCCCCCCCCcceEEeccCcccccCC
Q 044468 276 PRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSI-HSSYLPFPRLKEICVWKCAELKKLP 354 (396)
Q Consensus 276 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~c~~L~~lp 354 (396)
++|++|++++|..... .....+..+++|+.|++++|. +..+ +.....+++|+.|++.+| +++.+|
T Consensus 445 ~~L~~L~l~~n~l~~~------------~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~ 510 (570)
T 2z63_A 445 SSLEVLKMAGNSFQEN------------FLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVP 510 (570)
T ss_dssp TTCCEEECTTCEEGGG------------EECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred CcCcEEECcCCcCccc------------cchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCCC
Confidence 5555555555542111 122356778999999999984 5554 556677899999999998 688888
Q ss_pred CCCCCCCCCceEEeeh
Q 044468 355 LDCNQGLEQKIIIKGQ 370 (396)
Q Consensus 355 ~~~~~~~~~l~~~~~~ 370 (396)
.......+.++.+...
T Consensus 511 ~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 511 DGIFDRLTSLQKIWLH 526 (570)
T ss_dssp TTTTTTCTTCCEEECC
T ss_pred HHHhhcccCCcEEEec
Confidence 8766666777777633
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=6.5e-25 Score=222.93 Aligned_cols=278 Identities=10% Similarity=0.137 Sum_probs=180.1
Q ss_pred ccCC-CCCCCCcEEEccCCccCc------------------cChHHHh--cCccccEEEeecCCCCccccccccCCCcCC
Q 044468 29 LTET-PTCPHLRALFLHSNHLGT------------------VSNNFFH--SMASLRVLIFLYNRSLENLPLGILNLVSLQ 87 (396)
Q Consensus 29 l~~~-~~~~~L~~L~l~~~~~~~------------------~~~~~~~--~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~ 87 (396)
+|.. .++++|+.|++++|.+.. +|.. +. .+++|++|++++|...+.+|..++++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 5555 778899999999998876 7777 55 899999999999866778888899999999
Q ss_pred EEEccCCC-CCc--cchhhhcCC-------cccEEecccccCCCCCCc--chhcCCCcccEEEeeccCccchhccchhcc
Q 044468 88 HLDLSWTG-ITT--LPIELKYLV-------NLKCLNLEYTFCLSRIPQ--PVISDLKMLRALRMFECGFKVEQEADRILF 155 (396)
Q Consensus 88 ~L~l~~~~-l~~--l~~~l~~l~-------~L~~L~l~~~~~~~~~~~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 155 (396)
+|++++|. ++. +|..+.+++ +|++|++++|.+. .+|. . ++.+++|++|++++|.+...
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~-l~~L~~L~~L~Ls~N~l~~l-------- 588 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS-LQKMVKLGLLDCVHNKVRHL-------- 588 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH-HTTCTTCCEEECTTSCCCBC--------
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh-hhcCCCCCEEECCCCCcccc--------
Confidence 99999997 774 887776665 9999999998555 7887 5 88999999999999987742
Q ss_pred CCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcc-cceEEecccCCCcccchhhhhcc--ccccceeeecc
Q 044468 156 GDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSIN-TQSLCLRHLNNSNLLSAFSFASL--RHLWTLHLYFN 232 (396)
Q Consensus 156 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~ 232 (396)
. .+..+++|+.|++..+....++ ..+.++++ |+.|+++++.-. ..+ ..+..+ ++|+.|+++.|
T Consensus 589 ------p-~~~~L~~L~~L~Ls~N~l~~lp-----~~l~~l~~~L~~L~Ls~N~L~-~lp-~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 589 ------E-AFGTNVKLTDLKLDYNQIEEIP-----EDFCAFTDQVEGLGFSHNKLK-YIP-NIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp ------C-CCCTTSEESEEECCSSCCSCCC-----TTSCEECTTCCEEECCSSCCC-SCC-SCCCTTCSSCEEEEECCSS
T ss_pred ------h-hhcCCCcceEEECcCCccccch-----HHHhhccccCCEEECcCCCCC-cCc-hhhhccccCCCCEEECcCC
Confidence 2 7788889999999888876443 23566777 888888876432 221 112222 34777777755
Q ss_pred ccceee-------------------eccccccccccc--cccccCcEeEEeCceeecCCc-cC--------CCCCccEEe
Q 044468 233 DFEELN-------------------IDAGEVKRIRET--RGFHSLQKVYINYSKFRHATW-LV--------LAPRAKVIR 282 (396)
Q Consensus 233 ~i~~l~-------------------~~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~l~~-l~--------~l~~L~~L~ 282 (396)
.+.... +....-..+|.. ..+++|+.|++++|.++.++. .. .+++|++|+
T Consensus 655 ~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred cCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEE
Confidence 553210 000000112211 134555555555554444432 11 122555666
Q ss_pred eccccccceeecccccccchhccccccc--cccCcceeeccCCcccccccCCCCCCCCcceEEecc
Q 044468 283 ISNCQRLQEIISMEKLGEISAEVMDNLI--LFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWK 346 (396)
Q Consensus 283 l~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 346 (396)
+++|. ++.+.. .+. .+++|+.|+++++ .+..++.....+++|+.|++.+
T Consensus 735 Ls~N~-L~~lp~-------------~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 735 LRFNK-LTSLSD-------------DFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp CCSSC-CCCCCG-------------GGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCC
T ss_pred CCCCC-CccchH-------------HhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCC
Confidence 55553 333322 222 5666677776666 3555555555666777776655
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=9.1e-25 Score=222.17 Aligned_cols=155 Identities=21% Similarity=0.283 Sum_probs=92.4
Q ss_pred CCCccccEEEcccccccc-ccCCCCCCCCcEEEccCCccC-ccChHHHhcCccccEEEeecCCCCccccccccCCCcCCE
Q 044468 11 GMWKEITRMSLMQNAIQN-LTETPTCPHLRALFLHSNHLG-TVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQH 88 (396)
Q Consensus 11 ~~~~~L~~L~l~~~~~~~-l~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~ 88 (396)
..+++|++|++++|.+.. ++....+++|++|++++|.+. .++.. +..+++|++|++++|...+.+|.. .+++|++
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence 456666777777666665 333366777777777777665 33333 677777777777777322233322 5566666
Q ss_pred EEccCCCCC-ccchhhhcC-CcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhh
Q 044468 89 LDLSWTGIT-TLPIELKYL-VNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELL 166 (396)
Q Consensus 89 L~l~~~~l~-~l~~~l~~l-~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 166 (396)
|++++|.++ .+|..+... ++|++|++++|...+.+|.. ++.+++|++|++.+|.+.+. .....+.
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~------------ip~~~l~ 340 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGE------------LPMDTLL 340 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEE------------CCHHHHT
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCc------------CCHHHHh
Confidence 666666555 556555543 77777777777555566655 67777777777777766532 1122245
Q ss_pred cCCCCcEEEEEeccc
Q 044468 167 ALKHLNLLTVTLQIF 181 (396)
Q Consensus 167 ~l~~L~~L~l~~~~~ 181 (396)
++++|+.|++..+..
T Consensus 341 ~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEF 355 (768)
T ss_dssp TCTTCCEEECCSSEE
T ss_pred cCCCCCEEeCcCCcc
Confidence 555555555554443
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1.1e-24 Score=221.62 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=56.6
Q ss_pred ccccCcEeEEeCceeec-CC-ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccc
Q 044468 252 GFHSLQKVYINYSKFRH-AT-WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSI 329 (396)
Q Consensus 252 ~~~~L~~L~l~~~~l~~-l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 329 (396)
.+++|+.|++++|.++. +| .++.+++|+.|+++++.....++. .+..+++|+.|+++++.--..+
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-------------~l~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-------------EVGDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG-------------GGGGCTTCCEEECCSSCCEECC
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh-------------HHhCCCCCCEEECCCCcccCcC
Confidence 34566677777765554 33 256677777777776653223322 5566777777777777544466
Q ss_pred cCCCCCCCCcceEEeccCcccccCCCC
Q 044468 330 HSSYLPFPRLKEICVWKCAELKKLPLD 356 (396)
Q Consensus 330 ~~~~~~~~~L~~L~i~~c~~L~~lp~~ 356 (396)
|.....+++|+.|++++++--..+|..
T Consensus 697 p~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 697 PQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred ChHHhCCCCCCEEECcCCcccccCCCc
Confidence 666667777777777776544456653
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.5e-24 Score=203.61 Aligned_cols=270 Identities=16% Similarity=0.167 Sum_probs=222.8
Q ss_pred CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCCCCCccch-hhhcCCccc
Q 044468 33 PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWTGITTLPI-ELKYLVNLK 110 (396)
Q Consensus 33 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~ 110 (396)
..+++++.|+++++.+..+|..++..+++|++|++++| .+..++ ..+.++++|++|++++|.++.++. .+.++++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 45789999999999999999988899999999999999 677665 478999999999999999997754 478999999
Q ss_pred EEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhc
Q 044468 111 CLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNY 190 (396)
Q Consensus 111 ~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 190 (396)
+|++++| ....+|..+++.+++|++|++.+|.+... ....+..+++|+.|++..+.....+
T Consensus 121 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~~----- 181 (390)
T 3o6n_A 121 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERI-------------EDDTFQATTSLQNLQLSSNRLTHVD----- 181 (390)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBC-------------CTTTTSSCTTCCEEECCSSCCSBCC-----
T ss_pred EEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCcc-------------ChhhccCCCCCCEEECCCCcCCccc-----
Confidence 9999998 55677877678999999999999988764 4556888999999999988876542
Q ss_pred cCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCC
Q 044468 191 CNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT 270 (396)
Q Consensus 191 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~ 270 (396)
+..+++|+.|++.++.- . .+...++|++|+++.+.+..+... .+++|++|++.+|.+++.+
T Consensus 182 --~~~l~~L~~L~l~~n~l-~-----~~~~~~~L~~L~l~~n~l~~~~~~-----------~~~~L~~L~l~~n~l~~~~ 242 (390)
T 3o6n_A 182 --LSLIPSLFHANVSYNLL-S-----TLAIPIAVEELDASHNSINVVRGP-----------VNVELTILKLQHNNLTDTA 242 (390)
T ss_dssp --GGGCTTCSEEECCSSCC-S-----EEECCSSCSEEECCSSCCCEEECC-----------CCSSCCEEECCSSCCCCCG
T ss_pred --cccccccceeecccccc-c-----ccCCCCcceEEECCCCeeeecccc-----------ccccccEEECCCCCCcccH
Confidence 33456699999987532 2 134457899999998888765421 5689999999999999888
Q ss_pred ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCCCCCCCCcceEEeccCccc
Q 044468 271 WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAEL 350 (396)
Q Consensus 271 ~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L 350 (396)
+++.+++|++|+++++. ++.+.. ..+..+++|+.|+++++ .+..++.....+++|+.|++.+| ++
T Consensus 243 ~l~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l 307 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNE-LEKIMY------------HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HL 307 (390)
T ss_dssp GGGGCTTCSEEECCSSC-CCEEES------------GGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CC
T ss_pred HHcCCCCccEEECCCCc-CCCcCh------------hHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cc
Confidence 89999999999999986 555432 14567899999999998 57788777778999999999998 58
Q ss_pred ccCCCC
Q 044468 351 KKLPLD 356 (396)
Q Consensus 351 ~~lp~~ 356 (396)
+.+|..
T Consensus 308 ~~~~~~ 313 (390)
T 3o6n_A 308 LHVERN 313 (390)
T ss_dssp CCCGGG
T ss_pred eecCcc
Confidence 888764
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=1.8e-24 Score=198.54 Aligned_cols=294 Identities=13% Similarity=0.124 Sum_probs=213.7
Q ss_pred cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccC
Q 044468 15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSW 93 (396)
Q Consensus 15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~ 93 (396)
.++.++++++.+..+|.. -.++|+.|++++|.+..+++..+..+++|++|++++| .++.+ |..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCC
Confidence 689999999999888764 2478999999999998886655899999999999999 66655 67889999999999999
Q ss_pred CCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468 94 TGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL 173 (396)
Q Consensus 94 ~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 173 (396)
|.++.+|..+. ++|++|++++| ....++...+..+++|++|++.+|.+... ......+..+ +|+.
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENS-----------GFEPGAFDGL-KLNY 176 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGG-----------GSCTTSSCSC-CCSC
T ss_pred CcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccC-----------CCCcccccCC-ccCE
Confidence 99998887655 89999999998 45566665588999999999999988642 1234455555 7888
Q ss_pred EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccccccccc
Q 044468 174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGF 253 (396)
Q Consensus 174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~ 253 (396)
|+++.+....++.. +. ++|+.|+++++.- .......+..+++|++|+++.+.+..+..... +.+
T Consensus 177 L~l~~n~l~~l~~~-----~~--~~L~~L~l~~n~i-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--------~~l 240 (332)
T 2ft3_A 177 LRISEAKLTGIPKD-----LP--ETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSL--------SFL 240 (332)
T ss_dssp CBCCSSBCSSCCSS-----SC--SSCSCCBCCSSCC-CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG--------GGC
T ss_pred EECcCCCCCccCcc-----cc--CCCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCcCCcCChhHh--------hCC
Confidence 88888877654421 11 4588888887533 33333347778899999999888776543222 268
Q ss_pred ccCcEeEEeCceeecCCc-cCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCccc--cccc
Q 044468 254 HSLQKVYINYSKFRHATW-LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNL--KSIH 330 (396)
Q Consensus 254 ~~L~~L~l~~~~l~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~~~ 330 (396)
++|++|++++|.++.++. ++.+++|++|+++++. ++.+....|.+.. ....+++|+.|++.+++.. ...+
T Consensus 241 ~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~------~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 241 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVG------FGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSS------CCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred CCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHccccc------cccccccccceEeecCcccccccCc
Confidence 899999999998888765 7778999999998875 6666443332210 1123678888999888632 1222
Q ss_pred CCCCCCCCcceEEeccCc
Q 044468 331 SSYLPFPRLKEICVWKCA 348 (396)
Q Consensus 331 ~~~~~~~~L~~L~i~~c~ 348 (396)
.....+++|+.+++.++.
T Consensus 314 ~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 314 ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGTTBCCSTTEEC----
T ss_pred ccccccchhhhhhccccc
Confidence 334457788888887764
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=7.5e-24 Score=194.21 Aligned_cols=293 Identities=15% Similarity=0.157 Sum_probs=218.7
Q ss_pred cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccC
Q 044468 15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSW 93 (396)
Q Consensus 15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~ 93 (396)
+++.++++++.+..+|.. -.++++.|++++|.+..++...+..+++|++|++++| .++.+ |..++++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCC
Confidence 789999999999888764 2368999999999998888766899999999999999 66655 77899999999999999
Q ss_pred CCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468 94 TGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL 173 (396)
Q Consensus 94 ~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 173 (396)
|.++.+|..+. ++|++|++++| ....++...+..+++|++|++.+|.+... ......+.++++|+.
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSS-----------GIENGAFQGMKKLSY 175 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGG-----------GBCTTGGGGCTTCCE
T ss_pred CcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCcc-----------CcChhhccCCCCcCE
Confidence 99998887654 79999999998 45556665589999999999999987642 124567788999999
Q ss_pred EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccccccccc
Q 044468 174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGF 253 (396)
Q Consensus 174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~ 253 (396)
|++..+....++.. + .++|+.|+++++. ........+..+++|++|+++.+.++.+...... .+
T Consensus 176 L~l~~n~l~~l~~~-----~--~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--------~l 239 (330)
T 1xku_A 176 IRIADTNITTIPQG-----L--PPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA--------NT 239 (330)
T ss_dssp EECCSSCCCSCCSS-----C--CTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG--------GS
T ss_pred EECCCCccccCCcc-----c--cccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhcc--------CC
Confidence 99998887654421 1 1459999998764 3333334577889999999998888765542221 68
Q ss_pred ccCcEeEEeCceeecCCc-cCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccc---
Q 044468 254 HSLQKVYINYSKFRHATW-LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSI--- 329 (396)
Q Consensus 254 ~~L~~L~l~~~~l~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--- 329 (396)
++|++|++++|.++.++. +..+++|++|+++++. ++.+....|.+.. .....+.|+.|++.+++ +..+
T Consensus 240 ~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~------~~~~~~~l~~l~l~~N~-~~~~~i~ 311 (330)
T 1xku_A 240 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPG------YNTKKASYSGVSLFSNP-VQYWEIQ 311 (330)
T ss_dssp TTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSS------CCTTSCCCSEEECCSSS-SCGGGSC
T ss_pred CCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcc------cccccccccceEeecCc-ccccccC
Confidence 899999999998887754 7778999999999876 6666554433211 12346788888888876 3222
Q ss_pred cCCCCCCCCcceEEeccC
Q 044468 330 HSSYLPFPRLKEICVWKC 347 (396)
Q Consensus 330 ~~~~~~~~~L~~L~i~~c 347 (396)
+.....+++++.+++.++
T Consensus 312 ~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 312 PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGGTTCCCGGGEEC---
T ss_pred ccccccccceeEEEeccc
Confidence 223344667777777664
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=5.3e-24 Score=203.89 Aligned_cols=312 Identities=16% Similarity=0.160 Sum_probs=222.8
Q ss_pred CccCCCccccEEEcccccccc-ccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcc-cccc--cc
Q 044468 8 PRIGMWKEITRMSLMQNAIQN-LTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLEN-LPLG--IL 81 (396)
Q Consensus 8 ~~~~~~~~L~~L~l~~~~~~~-l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-l~~~--l~ 81 (396)
..|+.+++|++|++++|.+.. ++. . ..+++|++|++++|.+..+.+..+..+++|++|++++| .+.. .+.. +.
T Consensus 48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~ 126 (455)
T 3v47_A 48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFK 126 (455)
T ss_dssp TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTT
T ss_pred hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC-CCCccccCccccc
Confidence 358889999999999998874 543 3 88999999999999998765444899999999999999 5553 4443 88
Q ss_pred CCCcCCEEEccCCCCCcc-chh-hhcCCcccEEecccccCCCCCCcchhcC-----------------------------
Q 044468 82 NLVSLQHLDLSWTGITTL-PIE-LKYLVNLKCLNLEYTFCLSRIPQPVISD----------------------------- 130 (396)
Q Consensus 82 ~l~~L~~L~l~~~~l~~l-~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~----------------------------- 130 (396)
++++|++|++++|.++.+ |.. +.++++|++|++++|......+.. +..
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 205 (455)
T 3v47_A 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205 (455)
T ss_dssp TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhccccccccccccccCcccccchhhcccccc
Confidence 899999999999999866 544 789999999999998655544433 433
Q ss_pred -----CCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhh----hhhc--cCCC--CCc
Q 044468 131 -----LKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQR----LLNY--CNSS--RSI 197 (396)
Q Consensus 131 -----l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~--~~l~--~~~ 197 (396)
+++|++|++++|.+... ....+.......+|+.+++..+....... +... ..+. ..+
T Consensus 206 ~~~~~~~~L~~L~Ls~n~l~~~----------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNGFKES----------MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS 275 (455)
T ss_dssp CCTTTTCEEEEEECTTSCCCHH----------HHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTS
T ss_pred ccccccceeeeEecCCCccccc----------chhhhhccccccceeeEeeccccccccccchhhhccCccccccccccc
Confidence 35677777777766542 11122222334778888876553221100 0000 0011 125
Q ss_pred ccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCC--ccCCC
Q 044468 198 NTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT--WLVLA 275 (396)
Q Consensus 198 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~l~~l 275 (396)
+|+.|+++++.- .......+..+++|++|+++.+.+..+...... .+++|++|++++|.++.++ .++.+
T Consensus 276 ~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--------~l~~L~~L~Ls~N~l~~~~~~~~~~l 346 (455)
T 3v47_A 276 GVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW--------GLTHLLKLNLSQNFLGSIDSRMFENL 346 (455)
T ss_dssp CCCEEECCSSCC-CEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--------TCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred CceEEEecCccc-cccchhhcccCCCCCEEECCCCcccccChhHhc--------CcccCCEEECCCCccCCcChhHhcCc
Confidence 699999988643 333334478889999999998888866543322 6899999999999777764 47789
Q ss_pred CCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCC-CCCCCCcceEEeccCcccccCC
Q 044468 276 PRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSS-YLPFPRLKEICVWKCAELKKLP 354 (396)
Q Consensus 276 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L~~lp 354 (396)
++|++|+++++. ++.+.. ..+..+++|++|+++++ .+..++.. ...+++|+.|++.+++--...|
T Consensus 347 ~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 347 DKLEVLDLSYNH-IRALGD------------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSC-CCEECT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCEEECCCCc-ccccCh------------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999986 555532 14567999999999998 57777664 3678999999999886433344
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=2e-23 Score=214.37 Aligned_cols=143 Identities=23% Similarity=0.287 Sum_probs=119.4
Q ss_pred CCCCCCCccCCCccccEEEcccccccccc-CC-CCCCCCcEEEccCCc-cCccChHHHhcCccccEEEeecCCCCccc-c
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNLT-ET-PTCPHLRALFLHSNH-LGTVSNNFFHSMASLRVLIFLYNRSLENL-P 77 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~-~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~ 77 (396)
.+++.+|. ..+++++|++++|.+..+. .. ..+++|++|++++|. +..+++..+.++++|++|++++| .+..+ |
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p 90 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHP 90 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCH
Confidence 56788887 5689999999999999854 44 899999999999994 46775555999999999999999 56544 7
Q ss_pred ccccCCCcCCEEEccCCCCCc-cchh--hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccch
Q 044468 78 LGILNLVSLQHLDLSWTGITT-LPIE--LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVE 147 (396)
Q Consensus 78 ~~l~~l~~L~~L~l~~~~l~~-l~~~--l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~ 147 (396)
..++++++|++|++++|.++. +|.. +.++++|++|++++|......+...++++++|++|++++|.+...
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 889999999999999999884 5554 889999999999999665544433489999999999999988663
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=2.1e-23 Score=209.77 Aligned_cols=260 Identities=19% Similarity=0.181 Sum_probs=174.3
Q ss_pred CCCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL- 78 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~- 78 (396)
.+++.+|.- -.+++++|++++|.+..++.. ..+++|++|++++|.+..+++..+..+++|++|++++| .+..+|.
T Consensus 14 ~~L~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~ 91 (680)
T 1ziw_A 14 LKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDK 91 (680)
T ss_dssp SCCSSCCSC-SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTT
T ss_pred CCccccccc-cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChh
Confidence 456677642 136899999999999987653 78999999999999998776666899999999999999 7777775
Q ss_pred cccCCCcCCEEEccCCCCCccc-hhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468 79 GILNLVSLQHLDLSWTGITTLP-IELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGD 157 (396)
Q Consensus 79 ~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 157 (396)
.++++++|++|++++|.++.++ ..+.++++|++|++++|......+.. ++.+++|++|++.+|.+...
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~---------- 160 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQAL---------- 160 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCB----------
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCccccc----------
Confidence 5889999999999999998776 46889999999999998655554544 88999999999999987764
Q ss_pred chhhhHhh--hcCCCCcEEEEEecccchhhhh--hhccCCC---------------------CCcccceEEecccCCCcc
Q 044468 158 SEVLVEEL--LALKHLNLLTVTLQIFGALQRL--LNYCNSS---------------------RSINTQSLCLRHLNNSNL 212 (396)
Q Consensus 158 ~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~--~~~~~l~---------------------~~~~L~~L~l~~~~~~~~ 212 (396)
....+ ..+++|+.|++..+........ .....+. ..++|+.|++.++.- ..
T Consensus 161 ---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l-~~ 236 (680)
T 1ziw_A 161 ---KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL-ST 236 (680)
T ss_dssp ---CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC-CE
T ss_pred ---CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc-cc
Confidence 22222 2345667676665544322110 0000000 113456666655432 11
Q ss_pred cchhhhhccc--cccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCC--ccCCCCCccEEeeccc
Q 044468 213 LSAFSFASLR--HLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT--WLVLAPRAKVIRISNC 286 (396)
Q Consensus 213 ~~~~~l~~~~--~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~l~~l~~L~~L~l~~~ 286 (396)
.....+..++ +|++|+++.+.++.+..... +.+++|++|++.+|.++.+. .++++++|++|+++++
T Consensus 237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF--------AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp ECTTTTGGGGGSCCCEEECTTSCCCEECTTTT--------TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred cChhHhhccCcCCCCEEECCCCCcCccCcccc--------cCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 1112244443 37777777666654432222 15667777777776555432 3555666666666543
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=8.1e-24 Score=202.05 Aligned_cols=292 Identities=16% Similarity=0.144 Sum_probs=223.6
Q ss_pred CCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccC
Q 044468 3 GLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILN 82 (396)
Q Consensus 3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~ 82 (396)
++.++|.++.+++|++|++++|.+..++ ...+++|++|++++|.+..++ +..+++|++|++++| .++.+| +++
T Consensus 53 ~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~l~--~~~ 125 (457)
T 3bz5_A 53 SITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTKLD--VSQ 125 (457)
T ss_dssp CCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSCCC--CTT
T ss_pred CcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCeec--CCC
Confidence 4566788999999999999999999875 578999999999999998874 789999999999999 777775 889
Q ss_pred CCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhh
Q 044468 83 LVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLV 162 (396)
Q Consensus 83 l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 162 (396)
+++|++|++++|.++.++ ++++++|++|++++|...+.++ ++.+++|++|++++|.++..
T Consensus 126 l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l--------------- 185 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL--------------- 185 (457)
T ss_dssp CTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC---------------
T ss_pred CCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee---------------
Confidence 999999999999999875 7899999999999997676663 78899999999999988763
Q ss_pred HhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccc
Q 044468 163 EELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAG 242 (396)
Q Consensus 163 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~ 242 (396)
.+..++.|+.|++..+..... .+.++++|+.|+++++.- ...+ +..+++|+.|+++.+.++.+...
T Consensus 186 -~l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l-~~ip---~~~l~~L~~L~l~~N~l~~~~~~-- 251 (457)
T 3bz5_A 186 -DVSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKL-TEID---VTPLTQLTYFDCSVNPLTELDVS-- 251 (457)
T ss_dssp -CCTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCC-SCCC---CTTCTTCSEEECCSSCCSCCCCT--
T ss_pred -ccccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcc-cccC---ccccCCCCEEEeeCCcCCCcCHH--
Confidence 167888999999998887654 256778899999988643 3333 67789999999998888765421
Q ss_pred cccccccccccccCcEeEEeCceeecCC----------ccCCCCCccEEeeccccccceeecccccccchhccccccccc
Q 044468 243 EVKRIRETRGFHSLQKVYINYSKFRHAT----------WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILF 312 (396)
Q Consensus 243 ~~~~~~~~~~~~~L~~L~l~~~~l~~l~----------~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 312 (396)
.+++|+.|++.++.++.+. +.+.+++|+.|++++|..+..+.... .. -..-.+..+
T Consensus 252 ---------~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~-~~----L~~L~l~~~ 317 (457)
T 3bz5_A 252 ---------TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA-AG----ITELDLSQN 317 (457)
T ss_dssp ---------TCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTT-CC----CSCCCCTTC
T ss_pred ---------HCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCC-Cc----ceEechhhc
Confidence 4566665555544443321 24568999999999998776664311 00 000124566
Q ss_pred cCcceeeccCCcccccccCCCCCCCCcceEEeccCcccccC
Q 044468 313 GRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKL 353 (396)
Q Consensus 313 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l 353 (396)
++|+.|+++++ .++.++ ...+++|+.|++.+. +++.+
T Consensus 318 ~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 318 PKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNA-HIQDF 354 (457)
T ss_dssp TTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSS-CCCBC
T ss_pred ccCCEEECCCC-cccccc--cccCCcCcEEECCCC-CCCCc
Confidence 78888888776 465553 567889999988764 34443
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=5.4e-23 Score=202.10 Aligned_cols=130 Identities=18% Similarity=0.190 Sum_probs=109.5
Q ss_pred CCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEE
Q 044468 12 MWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLD 90 (396)
Q Consensus 12 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~ 90 (396)
.+...+++++++++++.+|..- .++|+.|++++|.+..+++..+..+++|++|++++| .++.+ |..+.++++|++|+
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEE
T ss_pred ccCCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEE
Confidence 3555689999999999988752 389999999999999888666999999999999999 66665 67789999999999
Q ss_pred ccCCCCCccchhhhcCCcccEEecccccCCC-CCCcchhcCCCcccEEEeeccCccc
Q 044468 91 LSWTGITTLPIELKYLVNLKCLNLEYTFCLS-RIPQPVISDLKMLRALRMFECGFKV 146 (396)
Q Consensus 91 l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~-~~~~~~i~~l~~L~~L~l~~~~~~~ 146 (396)
+++|.++.+|.. .+++|++|++++|.... .+|.. ++++++|++|++++|.+..
T Consensus 107 Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 107 VSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKE-FGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGG-GGGCTTCCEEEEECSBCCT
T ss_pred CCCCcCCccCcc--ccccCCEEECCCCCccccCchHh-hcccCcccEEecCCCcccc
Confidence 999999999877 89999999999985444 23455 9999999999999998765
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.3e-23 Score=207.70 Aligned_cols=290 Identities=15% Similarity=0.119 Sum_probs=203.6
Q ss_pred CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCCCCCccchh-hhcCCccc
Q 044468 33 PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWTGITTLPIE-LKYLVNLK 110 (396)
Q Consensus 33 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~ 110 (396)
-.+.+++.++++++.+..+|..++..+++|++|++++| .+..++ ..++++++|++|++++|.++.+|.. ++++++|+
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 35689999999999999999988899999999999999 676665 5889999999999999999977654 68999999
Q ss_pred EEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhc
Q 044468 111 CLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNY 190 (396)
Q Consensus 111 ~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 190 (396)
+|++++| .+..+|..+++.+++|++|++++|.+... ....+.++++|+.|++.++.....+
T Consensus 127 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~----- 187 (597)
T 3oja_B 127 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERI-------------EDDTFQATTSLQNLQLSSNRLTHVD----- 187 (597)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBC-------------CTTTTTTCTTCCEEECTTSCCSBCC-----
T ss_pred EEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCC-------------ChhhhhcCCcCcEEECcCCCCCCcC-----
Confidence 9999998 55577777679999999999999998874 4557888999999999988775542
Q ss_pred cCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccc-----------cccccccccccccCcEe
Q 044468 191 CNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAG-----------EVKRIRETRGFHSLQKV 259 (396)
Q Consensus 191 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~-----------~~~~~~~~~~~~~L~~L 259 (396)
+..+++|+.|++.++.- .. +...++|+.|+++.+.+..+..... .-...+.-+.+++|++|
T Consensus 188 --~~~l~~L~~L~l~~n~l-~~-----l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L 259 (597)
T 3oja_B 188 --LSLIPSLFHANVSYNLL-ST-----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEV 259 (597)
T ss_dssp --GGGCTTCSEEECCSSCC-SE-----EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred --hhhhhhhhhhhcccCcc-cc-----ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEE
Confidence 22344466666665321 11 2223345555555444433221100 00000101256777777
Q ss_pred EEeCceeecC--CccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCCCCCCC
Q 044468 260 YINYSKFRHA--TWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFP 337 (396)
Q Consensus 260 ~l~~~~l~~l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 337 (396)
++++|.++.+ ..++.+++|++|+++++. +..+.. ....+++|+.|++++| .+..++.....++
T Consensus 260 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~-------------~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~ 324 (597)
T 3oja_B 260 DLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNL-------------YGQPIPTLKVLDLSHN-HLLHVERNQPQFD 324 (597)
T ss_dssp ECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEEC-------------SSSCCTTCCEEECCSS-CCCCCGGGHHHHT
T ss_pred ECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCc-------------ccccCCCCcEEECCCC-CCCccCcccccCC
Confidence 7777765554 246667777777777764 444432 3456788888888887 4666766666788
Q ss_pred CcceEEeccCcccccCCCCCCCCCCCceEEee
Q 044468 338 RLKEICVWKCAELKKLPLDCNQGLEQKIIIKG 369 (396)
Q Consensus 338 ~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~~ 369 (396)
+|+.|++.+|. +..+|... .+.++.+..
T Consensus 325 ~L~~L~L~~N~-l~~~~~~~---~~~L~~L~l 352 (597)
T 3oja_B 325 RLENLYLDHNS-IVTLKLST---HHTLKNLTL 352 (597)
T ss_dssp TCSEEECCSSC-CCCCCCCT---TCCCSEEEC
T ss_pred CCCEEECCCCC-CCCcChhh---cCCCCEEEe
Confidence 88888888874 77776433 345555543
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.1e-22 Score=198.11 Aligned_cols=144 Identities=19% Similarity=0.221 Sum_probs=120.8
Q ss_pred cEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccCCC
Q 044468 17 TRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSWTG 95 (396)
Q Consensus 17 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~~ 95 (396)
+++++++++++.+|..-. ++|+.|++++|.+..+++..+..+++|++|++++| .++.+ |..++++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc
Confidence 679999999999887522 89999999999998888666999999999999999 66655 6789999999999999999
Q ss_pred CCccchhhhcCCcccEEecccccCCC-CCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCC--c
Q 044468 96 ITTLPIELKYLVNLKCLNLEYTFCLS-RIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHL--N 172 (396)
Q Consensus 96 l~~l~~~l~~l~~L~~L~l~~~~~~~-~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L--~ 172 (396)
++.+|.. .+++|++|++++|.... .+|.. ++.+++|++|++++|.+... .+..+++| +
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~~----------------~~~~l~~L~L~ 141 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEKS----------------SVLPIAHLNIS 141 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCGG----------------GGGGGTTSCEE
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccchh----------------hccccccceee
Confidence 9999877 89999999999996555 35666 99999999999999987652 33444555 7
Q ss_pred EEEEEeccc
Q 044468 173 LLTVTLQIF 181 (396)
Q Consensus 173 ~L~l~~~~~ 181 (396)
.|++..+..
T Consensus 142 ~L~l~~n~l 150 (520)
T 2z7x_B 142 KVLLVLGET 150 (520)
T ss_dssp EEEEEECTT
T ss_pred EEEeecccc
Confidence 777777654
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=1.5e-22 Score=203.60 Aligned_cols=359 Identities=19% Similarity=0.146 Sum_probs=210.4
Q ss_pred CCCCC--ccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-c
Q 044468 4 LTGAP--RIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-L 78 (396)
Q Consensus 4 l~~~~--~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~ 78 (396)
+..++ .|.++++|++|++++|.+..++.. ..+++|++|++++|.+..++...+..+++|++|++++| .+..++ .
T Consensus 37 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 115 (680)
T 1ziw_A 37 LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNN 115 (680)
T ss_dssp CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSC
T ss_pred CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChh
Confidence 44454 488899999999999999886444 78999999999999998888766899999999999999 666665 5
Q ss_pred cccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEecccccCCCCCCcchhc--CCCcccEEEeeccCccchhccch---
Q 044468 79 GILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVIS--DLKMLRALRMFECGFKVEQEADR--- 152 (396)
Q Consensus 79 ~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~--~l~~L~~L~l~~~~~~~~~~~~~--- 152 (396)
.++++++|++|++++|.++.. |..+.++++|++|++++|.. ..++...+. .+++|++|++.+|.+........
T Consensus 116 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 194 (680)
T 1ziw_A 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194 (680)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGS
T ss_pred HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCCCcccccChhhhhhh
Confidence 788999999999999988854 45578899999999999844 444433243 56889999999987765411000
Q ss_pred -------hccC-CchhhhHhh---hcCCCCcEEEEEecccchhhhhhhccCCCCCc--ccceEEecccCCCcccchhhhh
Q 044468 153 -------ILFG-DSEVLVEEL---LALKHLNLLTVTLQIFGALQRLLNYCNSSRSI--NTQSLCLRHLNNSNLLSAFSFA 219 (396)
Q Consensus 153 -------~~~~-~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~l~ 219 (396)
+... ........+ -..+.|+.|++..+....... ..+.+++ +|+.|+++++.- .......+.
T Consensus 195 ~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~----~~~~~l~~~~L~~L~Ls~n~l-~~~~~~~~~ 269 (680)
T 1ziw_A 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN----TTFLGLKWTNLTMLDLSYNNL-NVVGNDSFA 269 (680)
T ss_dssp SEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT----TTTGGGGGSCCCEEECTTSCC-CEECTTTTT
T ss_pred hhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh----hHhhccCcCCCCEEECCCCCc-CccCccccc
Confidence 0000 000000000 012445555554443322110 1122222 255666655432 222112344
Q ss_pred ccccccceeeeccccceeeeccccc--------------------ccccc----c-cccccCcEeEEeCceeecCCc--c
Q 044468 220 SLRHLWTLHLYFNDFEELNIDAGEV--------------------KRIRE----T-RGFHSLQKVYINYSKFRHATW--L 272 (396)
Q Consensus 220 ~~~~L~~L~l~~~~i~~l~~~~~~~--------------------~~~~~----~-~~~~~L~~L~l~~~~l~~l~~--l 272 (396)
.+++|++|+++.+.+..+....... ..+|. . ..+++|++|++.+|.++.++. +
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 349 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349 (680)
T ss_dssp TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT
T ss_pred CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh
Confidence 5555555555544444332111000 01111 1 257888888888887776543 6
Q ss_pred CCCCCccEEeeccccc-cceeecccccc-------------c-chhccccccccccCcceeeccCCccccccc-CCCCCC
Q 044468 273 VLAPRAKVIRISNCQR-LQEIISMEKLG-------------E-ISAEVMDNLILFGRLEYLILEGLQNLKSIH-SSYLPF 336 (396)
Q Consensus 273 ~~l~~L~~L~l~~~~~-l~~~~~~~~~~-------------~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~ 336 (396)
..+++|++|+++++.. +..+....|.. . ...-....+..+++|+.|+++++.-...++ .....+
T Consensus 350 ~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l 429 (680)
T 1ziw_A 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429 (680)
T ss_dssp TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTC
T ss_pred ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCc
Confidence 6788888888887641 12221111100 0 000011234556777777777764322333 234456
Q ss_pred CCcceEEeccCcccccCCCCCCCCCCCceEEeeh
Q 044468 337 PRLKEICVWKCAELKKLPLDCNQGLEQKIIIKGQ 370 (396)
Q Consensus 337 ~~L~~L~i~~c~~L~~lp~~~~~~~~~l~~~~~~ 370 (396)
++|+.|++.+|. +..++.......+.++.+...
T Consensus 430 ~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 430 ENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp TTCCEEECCSCS-EEECCTTTTTTCTTCCEEECT
T ss_pred ccccEEecCCCC-cceeChhhhhcCcccccchhc
Confidence 777777777764 666666555555666666543
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=2.6e-22 Score=199.93 Aligned_cols=142 Identities=24% Similarity=0.286 Sum_probs=120.1
Q ss_pred CCCCCCCccCCC-ccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc
Q 044468 2 AGLTGAPRIGMW-KEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL 78 (396)
Q Consensus 2 ~~l~~~~~~~~~-~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~ 78 (396)
.+++.+|. .+ +++++|++++|.++.++.. .++++|++|++++|.+..+++++|..+++|++|++++| .++.+|.
T Consensus 41 ~~l~~vP~--~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~ 117 (635)
T 4g8a_A 41 LNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLAL 117 (635)
T ss_dssp SCCSSCCS--SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECG
T ss_pred CCcCccCC--CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCH
Confidence 56777773 23 4799999999999998754 88999999999999999998877999999999999999 7887774
Q ss_pred -cccCCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCC-CCCcchhcCCCcccEEEeeccCccch
Q 044468 79 -GILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLS-RIPQPVISDLKMLRALRMFECGFKVE 147 (396)
Q Consensus 79 -~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~-~~~~~~i~~l~~L~~L~l~~~~~~~~ 147 (396)
.+.++++|++|++++|.++.++.. ++++++|++|++++|.... ..|.. ++.+++|++|++.+|.+...
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCcccccc
Confidence 578999999999999999988764 8899999999999985543 24454 88899999999999877554
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=1.7e-22 Score=207.44 Aligned_cols=306 Identities=20% Similarity=0.221 Sum_probs=211.6
Q ss_pred CccCCCccccEEEccccccc-cc-cCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCc-ccccc--cc
Q 044468 8 PRIGMWKEITRMSLMQNAIQ-NL-TET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE-NLPLG--IL 81 (396)
Q Consensus 8 ~~~~~~~~L~~L~l~~~~~~-~l-~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~l~~~--l~ 81 (396)
..|.++++|++|++++|... .+ +.. .++++|++|++++|.+..+.+..+..+++|++|++++| .+. .+|.. ++
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFR 120 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCS
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCcccc
Confidence 36888999999999999544 46 444 89999999999999998775555999999999999999 554 35544 88
Q ss_pred CCCcCCEEEccCCCCCcc--chhhhcCCcccEEecccccCCCCCCcchhcCC--CcccEEEeeccCccchhccchhccCC
Q 044468 82 NLVSLQHLDLSWTGITTL--PIELKYLVNLKCLNLEYTFCLSRIPQPVISDL--KMLRALRMFECGFKVEQEADRILFGD 157 (396)
Q Consensus 82 ~l~~L~~L~l~~~~l~~l--~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~ 157 (396)
++++|++|++++|.++.+ +..++++++|++|++++|......+.. +..+ ++|+.|++..|.+...
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~~n~l~~~---------- 189 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLAANSLYSR---------- 189 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEECCSBSCCC----------
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEECCCCccccc----------
Confidence 999999999999998855 356899999999999998655555554 6666 7899999988877652
Q ss_pred chhhhHhhhcCC------CCcEEEEEecccch--hhhhhh------------------------------ccCCCC--Cc
Q 044468 158 SEVLVEELLALK------HLNLLTVTLQIFGA--LQRLLN------------------------------YCNSSR--SI 197 (396)
Q Consensus 158 ~~~~~~~l~~l~------~L~~L~l~~~~~~~--~~~~~~------------------------------~~~l~~--~~ 197 (396)
....+..+. .|+.|+++++.... ...+.. ...+.+ .+
T Consensus 190 ---~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~ 266 (844)
T 3j0a_A 190 ---VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266 (844)
T ss_dssp ---CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred ---cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence 111122221 36666666553211 000000 011111 25
Q ss_pred ccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCC--ccCCC
Q 044468 198 NTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT--WLVLA 275 (396)
Q Consensus 198 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~l~~l 275 (396)
+|+.|+++++.- .......+..+++|+.|+++.+.+..+..... ..+++|++|++++|.++.+. .+..+
T Consensus 267 ~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--------~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 267 SVRHLDLSHGFV-FSLNSRVFETLKDLKVLNLAYNKINKIADEAF--------YGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp CCCEEECTTCCC-CEECSCCSSSCCCCCEEEEESCCCCEECTTTT--------TTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred CccEEECCCCcc-cccChhhhhcCCCCCEEECCCCcCCCCChHHh--------cCCCCCCEEECCCCCCCccCHHHhcCC
Confidence 688888876542 22222346778888888888888776543322 26788999999888777653 46778
Q ss_pred CCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCCCCCCCCcceEEeccCcccccCCC
Q 044468 276 PRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPL 355 (396)
Q Consensus 276 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~ 355 (396)
++|++|+++++. +..+.. ..+..+++|+.|+++++ .+..++ .+++|+.|.+.++ +++.+|.
T Consensus 338 ~~L~~L~L~~N~-i~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~i~----~~~~L~~L~l~~N-~l~~l~~ 398 (844)
T 3j0a_A 338 PKVAYIDLQKNH-IAIIQD------------QTFKFLEKLQTLDLRDN-ALTTIH----FIPSIPDIFLSGN-KLVTLPK 398 (844)
T ss_dssp TTCCEEECCSCC-CCCCCS------------SCSCSCCCCCEEEEETC-CSCCCS----SCCSCSEEEEESC-CCCCCCC
T ss_pred CCCCEEECCCCC-CCccCh------------hhhcCCCCCCEEECCCC-CCCccc----CCCCcchhccCCC-Ccccccc
Confidence 889999988874 444432 13456888899988887 355443 2778888888876 4667765
Q ss_pred C
Q 044468 356 D 356 (396)
Q Consensus 356 ~ 356 (396)
.
T Consensus 399 ~ 399 (844)
T 3j0a_A 399 I 399 (844)
T ss_dssp C
T ss_pred c
Confidence 4
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=6.6e-23 Score=189.67 Aligned_cols=275 Identities=17% Similarity=0.157 Sum_probs=191.1
Q ss_pred CCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEE
Q 044468 12 MWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLD 90 (396)
Q Consensus 12 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~ 90 (396)
.|+.....+.+++.++.+|.. -.++|+.|++++|.+..++...+..+++|++|++++| .++.+ +..+.++++|++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCeEeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEE
Confidence 355555677888888887764 2358888899888888777755888888999999888 66655 45678888899999
Q ss_pred ccCCCCCccchh-hhcCCcccEEecccccCCCCCCc-chhcCCCcccEEEeeccC-ccchhccchhccCCchhhhHhhhc
Q 044468 91 LSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQ-PVISDLKMLRALRMFECG-FKVEQEADRILFGDSEVLVEELLA 167 (396)
Q Consensus 91 l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~-~~i~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 167 (396)
+++|.++.++.. +.++++|++|++++| ....++. ..+..+++|++|++.+|. +... ....+.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-------------~~~~~~~ 172 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKI-------------QRKDFAG 172 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-------------CTTTTTT
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccccc-------------CHHHccC
Confidence 988888887766 778888999999887 4445665 447788889999888884 4432 3456777
Q ss_pred CCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccc
Q 044468 168 LKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRI 247 (396)
Q Consensus 168 l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~ 247 (396)
+++|+.|++..+...... ...+.++++|+.|+++++.. .......+..+++|+.|+++.+.++.......
T Consensus 173 l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l----- 242 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYE----PKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSEL----- 242 (353)
T ss_dssp CCEEEEEEEEETTCCEEC----TTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------
T ss_pred CCCCCEEECCCCCcCccC----HHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCcccccccccc-----
Confidence 888888888887765431 13456677788888887543 33222234557889999998877775543211
Q ss_pred ccccccccCcEeEEeCceeec-----CC-ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeecc
Q 044468 248 RETRGFHSLQKVYINYSKFRH-----AT-WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILE 321 (396)
Q Consensus 248 ~~~~~~~~L~~L~l~~~~l~~-----l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 321 (396)
+.......++.+++.++.+++ ++ .+..+++|++|+++++. ++.+.. . ....+++|++|+++
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~-~-----------~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPD-G-----------IFDRLTSLQKIWLH 309 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCT-T-----------TTTTCTTCCEEECC
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCH-H-----------HHhcCCCCCEEEee
Confidence 111145667777777775544 22 35678888888888875 555533 0 23568888888888
Q ss_pred CCcc
Q 044468 322 GLQN 325 (396)
Q Consensus 322 ~~~~ 325 (396)
+++-
T Consensus 310 ~N~~ 313 (353)
T 2z80_A 310 TNPW 313 (353)
T ss_dssp SSCB
T ss_pred CCCc
Confidence 8753
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=6.2e-23 Score=186.52 Aligned_cols=250 Identities=14% Similarity=0.088 Sum_probs=134.6
Q ss_pred CCCcEEEccCCccC---ccChHHHhcCccccEEEeec-CCCCccccccccCCCcCCEEEccCCCCC-ccchhhhcCCccc
Q 044468 36 PHLRALFLHSNHLG---TVSNNFFHSMASLRVLIFLY-NRSLENLPLGILNLVSLQHLDLSWTGIT-TLPIELKYLVNLK 110 (396)
Q Consensus 36 ~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~-~~~~~~l~~~l~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~ 110 (396)
.+++.|+++++.+. .+|.. +..+++|++|++++ +...+.+|..++++++|++|++++|.++ .+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 34555555555443 24443 45555555555552 3222244444555555555555555554 4444455555555
Q ss_pred EEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCC-CCcEEEEEecccc-hhhhhh
Q 044468 111 CLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALK-HLNLLTVTLQIFG-ALQRLL 188 (396)
Q Consensus 111 ~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~-~~~~~~ 188 (396)
+|++++|.+...+|.. ++.+++|++|++.+|.+.+. ....+..++ .|+.|++..+... ..+.
T Consensus 129 ~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~-------------~p~~l~~l~~~L~~L~L~~N~l~~~~~~-- 192 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGA-------------IPDSYGSFSKLFTSMTISRNRLTGKIPP-- 192 (313)
T ss_dssp EEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEE-------------CCGGGGCCCTTCCEEECCSSEEEEECCG--
T ss_pred EEeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCc-------------CCHHHhhhhhcCcEEECcCCeeeccCCh--
Confidence 5555555444344443 45555555555555554431 333444444 5555555544433 1111
Q ss_pred hccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeec
Q 044468 189 NYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRH 268 (396)
Q Consensus 189 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 268 (396)
.+.+++ |+.|+++++.- .......+..+++|+.|+++.+.+.... |....+++|++|++++|.++.
T Consensus 193 ---~~~~l~-L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------~~~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 193 ---TFANLN-LAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSLAFDL---------GKVGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp ---GGGGCC-CSEEECCSSEE-EECCGGGCCTTSCCSEEECCSSEECCBG---------GGCCCCTTCCEEECCSSCCEE
T ss_pred ---HHhCCc-ccEEECcCCcc-cCcCCHHHhcCCCCCEEECCCCceeeec---------CcccccCCCCEEECcCCcccC
Confidence 111222 55566655321 1122233566778888888866665221 111267888999998887764
Q ss_pred -CC-ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCccccccc
Q 044468 269 -AT-WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIH 330 (396)
Q Consensus 269 -l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 330 (396)
++ .+..+++|++|+++++. ++..+. ....+++|+.+++.+++.+...+
T Consensus 259 ~~p~~l~~l~~L~~L~Ls~N~-l~~~ip-------------~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 259 TLPQGLTQLKFLHSLNVSFNN-LCGEIP-------------QGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSE-EEEECC-------------CSTTGGGSCGGGTCSSSEEESTT
T ss_pred cCChHHhcCcCCCEEECcCCc-ccccCC-------------CCccccccChHHhcCCCCccCCC
Confidence 33 37778899999998886 332222 22578899999999888776543
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=1.1e-21 Score=179.80 Aligned_cols=275 Identities=17% Similarity=0.149 Sum_probs=205.3
Q ss_pred CCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccc
Q 044468 3 GLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGI 80 (396)
Q Consensus 3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l 80 (396)
++..+|. .-.++++.|++++|.+..++.. ..+++|++|++++|.+..+.+..+..+++|++|++++| .++.+|..+
T Consensus 42 ~l~~lp~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~ 119 (330)
T 1xku_A 42 GLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKM 119 (330)
T ss_dssp CCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSC
T ss_pred CccccCc-cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhh
Confidence 4555553 1236899999999999997663 88999999999999998775444899999999999999 788888765
Q ss_pred cCCCcCCEEEccCCCCCccch-hhhcCCcccEEecccccCCC--CCCcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468 81 LNLVSLQHLDLSWTGITTLPI-ELKYLVNLKCLNLEYTFCLS--RIPQPVISDLKMLRALRMFECGFKVEQEADRILFGD 157 (396)
Q Consensus 81 ~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~--~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 157 (396)
. ++|++|++++|.++.++. .+.++++|++|++++|.... ..+.. +..+++|++|++.+|.+...
T Consensus 120 ~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l---------- 186 (330)
T 1xku_A 120 P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTNITTI---------- 186 (330)
T ss_dssp C--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSCCCSC----------
T ss_pred c--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh-ccCCCCcCEEECCCCccccC----------
Confidence 4 899999999999997765 47899999999999985532 23334 88999999999999988763
Q ss_pred chhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecccccee
Q 044468 158 SEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL 237 (396)
Q Consensus 158 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l 237 (396)
...+ .++|+.|++..+....... ..+.++++|+.|+++++.- .......+..+++|++|+++.+.+..+
T Consensus 187 ----~~~~--~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~l 255 (330)
T 1xku_A 187 ----PQGL--PPSLTELHLDGNKITKVDA----ASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLVKV 255 (330)
T ss_dssp ----CSSC--CTTCSEEECTTSCCCEECT----GGGTTCTTCCEEECCSSCC-CEECTTTGGGSTTCCEEECCSSCCSSC
T ss_pred ----Cccc--cccCCEEECCCCcCCccCH----HHhcCCCCCCEEECCCCcC-ceeChhhccCCCCCCEEECCCCcCccC
Confidence 1111 2789999998887654421 2355677799999988643 333333578889999999998888754
Q ss_pred eeccccccccccccccccCcEeEEeCceeecCCc--cC------CCCCccEEeeccccccceeecccccccchhcccccc
Q 044468 238 NIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW--LV------LAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNL 309 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--l~------~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 309 (396)
.... ..+++|++|++.+|.++.++. +. ..+.|+.|++.+++. ..+.. .....
T Consensus 256 p~~l---------~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~-~~~~i----------~~~~f 315 (330)
T 1xku_A 256 PGGL---------ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV-QYWEI----------QPSTF 315 (330)
T ss_dssp CTTT---------TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS-CGGGS----------CGGGG
T ss_pred Chhh---------ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc-ccccc----------Ccccc
Confidence 4322 278999999999998887653 21 258899999998873 32211 01245
Q ss_pred ccccCcceeeccCC
Q 044468 310 ILFGRLEYLILEGL 323 (396)
Q Consensus 310 ~~~~~L~~L~l~~~ 323 (396)
..+++|+.++++++
T Consensus 316 ~~~~~l~~l~L~~N 329 (330)
T 1xku_A 316 RCVYVRAAVQLGNY 329 (330)
T ss_dssp TTCCCGGGEEC---
T ss_pred ccccceeEEEeccc
Confidence 66888999998775
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=5e-22 Score=182.18 Aligned_cols=275 Identities=20% Similarity=0.212 Sum_probs=205.1
Q ss_pred CCCCCCccCCCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccc
Q 044468 3 GLTGAPRIGMWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGI 80 (396)
Q Consensus 3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l 80 (396)
++..+|. .-.+++++|++++|.+..++. . ..+++|++|++++|.+..+++..+..+++|++|++++| .++.+|..+
T Consensus 44 ~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~ 121 (332)
T 2ft3_A 44 GLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNL 121 (332)
T ss_dssp CCSSCCS-CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSC
T ss_pred CccccCC-CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCccc
Confidence 4555653 224689999999999999754 3 89999999999999998875555899999999999999 788888766
Q ss_pred cCCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCC--CCCcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468 81 LNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLS--RIPQPVISDLKMLRALRMFECGFKVEQEADRILFGD 157 (396)
Q Consensus 81 ~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~--~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 157 (396)
. ++|++|++++|.++.++.. +.++++|++|++++|.... ..+.. +..+ +|++|++.+|.+...
T Consensus 122 ~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l-~L~~L~l~~n~l~~l---------- 187 (332)
T 2ft3_A 122 P--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FDGL-KLNYLRISEAKLTGI---------- 187 (332)
T ss_dssp C--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-SCSC-CCSCCBCCSSBCSSC----------
T ss_pred c--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccc-ccCC-ccCEEECcCCCCCcc----------
Confidence 5 8999999999999988764 7899999999999985532 33333 6677 999999999988763
Q ss_pred chhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecccccee
Q 044468 158 SEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEEL 237 (396)
Q Consensus 158 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l 237 (396)
...+ .++|+.|+++.+....... ..+.++++|+.|+++++.- .......+..+++|++|+++.+.++.+
T Consensus 188 ----~~~~--~~~L~~L~l~~n~i~~~~~----~~l~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~l 256 (332)
T 2ft3_A 188 ----PKDL--PETLNELHLDHNKIQAIEL----EDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLSRV 256 (332)
T ss_dssp ----CSSS--CSSCSCCBCCSSCCCCCCT----TSSTTCTTCSCCBCCSSCC-CCCCTTGGGGCTTCCEEECCSSCCCBC
T ss_pred ----Cccc--cCCCCEEECCCCcCCccCH----HHhcCCCCCCEEECCCCcC-CcCChhHhhCCCCCCEEECCCCcCeec
Confidence 1111 1678888888887755431 3466778899999988643 333333578899999999998888755
Q ss_pred eeccccccccccccccccCcEeEEeCceeecCCc--cC------CCCCccEEeeccccccceeecccccccchhcccccc
Q 044468 238 NIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW--LV------LAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNL 309 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--l~------~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 309 (396)
.... +.+++|++|++++|.++.++. +. ..++|+.|++.+++. ..+.. .....
T Consensus 257 p~~l---------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~-~~~~~----------~~~~~ 316 (332)
T 2ft3_A 257 PAGL---------PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV-PYWEV----------QPATF 316 (332)
T ss_dssp CTTG---------GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS-CGGGS----------CGGGG
T ss_pred Chhh---------hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc-ccccc----------Ccccc
Confidence 4322 278999999999998887643 22 257899999999873 31110 01245
Q ss_pred ccccCcceeeccCCc
Q 044468 310 ILFGRLEYLILEGLQ 324 (396)
Q Consensus 310 ~~~~~L~~L~l~~~~ 324 (396)
..+++|+.++++++.
T Consensus 317 ~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 317 RCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTBCCSTTEEC----
T ss_pred cccchhhhhhccccc
Confidence 678999999998874
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=1.9e-22 Score=183.24 Aligned_cols=254 Identities=17% Similarity=0.060 Sum_probs=196.7
Q ss_pred ccccEEEeecCCCCc--cccccccCCCcCCEEEccC-CCCC-ccchhhhcCCcccEEecccccCCCCCCcchhcCCCccc
Q 044468 60 ASLRVLIFLYNRSLE--NLPLGILNLVSLQHLDLSW-TGIT-TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLR 135 (396)
Q Consensus 60 ~~L~~L~l~~~~~~~--~l~~~l~~l~~L~~L~l~~-~~l~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~ 135 (396)
.++++|+++++...+ .+|..++++++|++|++++ +.+. .+|..+.++++|++|++++|...+.+|.. +..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCC
Confidence 679999999994434 6888999999999999994 7776 78989999999999999999766677876 89999999
Q ss_pred EEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccc-hhhhhhhccCCCCCc-ccceEEecccCCCccc
Q 044468 136 ALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFG-ALQRLLNYCNSSRSI-NTQSLCLRHLNNSNLL 213 (396)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~ 213 (396)
+|++++|.+.+. ....+..+++|+.|++..+... ..+. .+.+++ +|+.|+++++.- ...
T Consensus 129 ~L~Ls~N~l~~~-------------~p~~~~~l~~L~~L~L~~N~l~~~~p~-----~l~~l~~~L~~L~L~~N~l-~~~ 189 (313)
T 1ogq_A 129 TLDFSYNALSGT-------------LPPSISSLPNLVGITFDGNRISGAIPD-----SYGSFSKLFTSMTISRNRL-TGK 189 (313)
T ss_dssp EEECCSSEEESC-------------CCGGGGGCTTCCEEECCSSCCEEECCG-----GGGCCCTTCCEEECCSSEE-EEE
T ss_pred EEeCCCCccCCc-------------CChHHhcCCCCCeEECcCCcccCcCCH-----HHhhhhhcCcEEECcCCee-ecc
Confidence 999999988753 5677888999999999988875 3321 233444 699999987543 222
Q ss_pred chhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeec-CCccCCCCCccEEeecccccccee
Q 044468 214 SAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRH-ATWLVLAPRAKVIRISNCQRLQEI 292 (396)
Q Consensus 214 ~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-l~~l~~l~~L~~L~l~~~~~l~~~ 292 (396)
....+..++ |+.|+++.+.++....... +.+++|++|++.+|.++. .+.+..+++|++|+++++.....+
T Consensus 190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~--------~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 260 (313)
T 1ogq_A 190 IPPTFANLN-LAFVDLSRNMLEGDASVLF--------GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL 260 (313)
T ss_dssp CCGGGGGCC-CSEEECCSSEEEECCGGGC--------CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECC
T ss_pred CChHHhCCc-ccEEECcCCcccCcCCHHH--------hcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcC
Confidence 223456665 9999999888764332222 278999999999997775 555777999999999998732233
Q ss_pred ecccccccchhccccccccccCcceeeccCCcccccccCCCCCCCCcceEEeccCcccccCCCC
Q 044468 293 ISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYLPFPRLKEICVWKCAELKKLPLD 356 (396)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~lp~~ 356 (396)
.. .+..+++|++|+++++.--..++.. ..+++|+.+++.+.+.+...|..
T Consensus 261 p~-------------~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 261 PQ-------------GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp CG-------------GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSS
T ss_pred Ch-------------HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCC
Confidence 22 5667899999999998533356554 77999999999999888876654
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=7.9e-22 Score=180.31 Aligned_cols=219 Identities=19% Similarity=0.220 Sum_probs=140.5
Q ss_pred CCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEec
Q 044468 35 CPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNL 114 (396)
Q Consensus 35 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l 114 (396)
..+++.|+++++.+..+|.. +.++++|++|++++| .+..+|..++++++|++|++++|.++.+|..+.++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 46778888888888777776 666888888888888 6667777778888888888888887778877888888888888
Q ss_pred ccccCCCCCCcchhc---------CCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhh
Q 044468 115 EYTFCLSRIPQPVIS---------DLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQ 185 (396)
Q Consensus 115 ~~~~~~~~~~~~~i~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 185 (396)
++|+..+.+|.. +. .+++|++|++.+|.+.. ....+..+++|+.|++..+....++
T Consensus 158 ~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~--------------lp~~l~~l~~L~~L~L~~N~l~~l~ 222 (328)
T 4fcg_A 158 RACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRS--------------LPASIANLQNLKSLKIRNSPLSALG 222 (328)
T ss_dssp EEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCCC--------------CCGGGGGCTTCCEEEEESSCCCCCC
T ss_pred CCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcCc--------------chHhhcCCCCCCEEEccCCCCCcCc
Confidence 887677777765 33 36667777776666553 2334555666666666655543221
Q ss_pred hhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccc-cccccCcEeEEeCc
Q 044468 186 RLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRET-RGFHSLQKVYINYS 264 (396)
Q Consensus 186 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 264 (396)
. .+..+++|++|+++.+.+... +|.. +.+++|++|++.+|
T Consensus 223 ~------------------------------~l~~l~~L~~L~Ls~n~~~~~---------~p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 223 P------------------------------AIHHLPKLEELDLRGCTALRN---------YPPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp G------------------------------GGGGCTTCCEEECTTCTTCCB---------CCCCTTCCCCCCEEECTTC
T ss_pred h------------------------------hhccCCCCCEEECcCCcchhh---------hHHHhcCCCCCCEEECCCC
Confidence 1 234455555555553333211 1111 25666777777666
Q ss_pred -eeecCC-ccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccC
Q 044468 265 -KFRHAT-WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEG 322 (396)
Q Consensus 265 -~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 322 (396)
....++ .++.+++|++|++++|.....++. .+..+++|+.+.+..
T Consensus 264 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-------------~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-------------LIAQLPANCIILVPP 310 (328)
T ss_dssp TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-------------GGGGSCTTCEEECCG
T ss_pred CchhhcchhhhcCCCCCEEeCCCCCchhhccH-------------HHhhccCceEEeCCH
Confidence 344444 355677777777777665555543 555667777776654
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=6.9e-22 Score=180.68 Aligned_cols=86 Identities=23% Similarity=0.326 Sum_probs=71.8
Q ss_pred cCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEE
Q 044468 58 SMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRAL 137 (396)
Q Consensus 58 ~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L 137 (396)
...++++|+++++ .++.+|..++++++|++|++++|.++.+|..+.++++|++|++++|.+. .+|.. ++.+++|++|
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGG-GGGCTTCCEE
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHH-HhcCcCCCEE
Confidence 4578899999998 7778888888899999999999988888888888999999999988444 77776 8888888888
Q ss_pred EeeccCccc
Q 044468 138 RMFECGFKV 146 (396)
Q Consensus 138 ~l~~~~~~~ 146 (396)
++.+|...+
T Consensus 156 ~L~~n~~~~ 164 (328)
T 4fcg_A 156 SIRACPELT 164 (328)
T ss_dssp EEEEETTCC
T ss_pred ECCCCCCcc
Confidence 888876554
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=2.6e-21 Score=178.89 Aligned_cols=274 Identities=18% Similarity=0.147 Sum_probs=117.9
Q ss_pred CCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEEccCCCCCccc-hhhhcCCcccEE
Q 044468 35 CPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLDLSWTGITTLP-IELKYLVNLKCL 112 (396)
Q Consensus 35 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L 112 (396)
|+.....+++++.+..+|.+ + .++|++|++++| .++.++. .+.++++|++|++++|.++.++ ..+.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~~iP~~-~--~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSG-L--TEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTT-C--CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCccccccc-c--cccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 34444445555555555543 1 135555555555 4444432 4455555555555555555432 234555555555
Q ss_pred ecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecc-cchhhhhhhcc
Q 044468 113 NLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQI-FGALQRLLNYC 191 (396)
Q Consensus 113 ~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~ 191 (396)
++++| ....++...++.+++|++|++++|.+... .....+.++++|+.|++..+. ...... .
T Consensus 106 ~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~----~ 168 (353)
T 2z80_A 106 DLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTL------------GETSLFSHLTKLQILRVGNMDTFTKIQR----K 168 (353)
T ss_dssp ECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSS------------CSSCSCTTCTTCCEEEEEESSSCCEECT----T
T ss_pred ECCCC-cCCcCCHhHhCCCccCCEEECCCCCCccc------------CchhhhccCCCCcEEECCCCccccccCH----H
Confidence 55554 23334433345555555555555544432 001234445555555555542 221110 1
Q ss_pred CCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCCc
Q 044468 192 NSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW 271 (396)
Q Consensus 192 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~ 271 (396)
.+.++++|+.|+++++.- .......+..+++|++|+++.+.+..+..... ..+++|++|++++|.++.++.
T Consensus 169 ~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--------~~~~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDL-QSYEPKSLKSIQNVSHLILHMKQHILLLEIFV--------DVTSSVECLELRDTDLDTFHF 239 (353)
T ss_dssp TTTTCCEEEEEEEEETTC-CEECTTTTTTCSEEEEEEEECSCSTTHHHHHH--------HHTTTEEEEEEESCBCTTCCC
T ss_pred HccCCCCCCEEECCCCCc-CccCHHHHhccccCCeecCCCCccccchhhhh--------hhcccccEEECCCCccccccc
Confidence 233444455555554321 11111234445555555555444432221110 034555555555554443221
Q ss_pred -----cCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCCC-CCCCCcceEEec
Q 044468 272 -----LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSY-LPFPRLKEICVW 345 (396)
Q Consensus 272 -----l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~i~ 345 (396)
....+.++.++++++. +...... .+...+..+++|+.|+++++ .+..++... ..+++|+.|++.
T Consensus 240 ~~l~~~~~~~~l~~l~L~~~~-l~~~~l~--------~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 240 SELSTGETNSLIKKFTFRNVK-ITDESLF--------QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp C------CCCCCCEEEEESCB-CCHHHHH--------HHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred cccccccccchhhcccccccc-ccCcchh--------hhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEee
Confidence 1223444455544432 1110000 01112334555555555554 344444443 345555555555
Q ss_pred cCc
Q 044468 346 KCA 348 (396)
Q Consensus 346 ~c~ 348 (396)
+++
T Consensus 310 ~N~ 312 (353)
T 2z80_A 310 TNP 312 (353)
T ss_dssp SSC
T ss_pred CCC
Confidence 543
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=5.5e-21 Score=182.07 Aligned_cols=242 Identities=19% Similarity=0.246 Sum_probs=171.1
Q ss_pred ccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCC
Q 044468 16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWT 94 (396)
Q Consensus 16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~ 94 (396)
.+.++..+.++..+|.. -.++++.|++++|.+..++...+..+++|++|++++| .+..++ ..+.++++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC
Confidence 45677777777777664 2257788888888877766555778888888888888 555554 56777888888888888
Q ss_pred CCCccch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468 95 GITTLPI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL 173 (396)
Q Consensus 95 ~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 173 (396)
.++.++. .+..+++|++|++++| .+..++...+..+++|++|++.++..... .....+.++++|+.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~------------i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSY------------ISEGAFEGLSNLRY 189 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE------------ECTTTTTTCSSCCE
T ss_pred cCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcce------------eCcchhhcccccCe
Confidence 8877765 3677888888888887 34455554477788888888887543321 13345667778888
Q ss_pred EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccccccccc
Q 044468 174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGF 253 (396)
Q Consensus 174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~ 253 (396)
|++..+....++ .+.++++|+.|+++++. ........+.++++|++|+++.+.++.+...... .+
T Consensus 190 L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------~l 254 (440)
T 3zyj_A 190 LNLAMCNLREIP------NLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD--------NL 254 (440)
T ss_dssp EECTTSCCSSCC------CCTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSST--------TC
T ss_pred ecCCCCcCcccc------ccCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhc--------CC
Confidence 887777665443 35566668888888753 3333334577888899999988888766543332 67
Q ss_pred ccCcEeEEeCceeecCCc--cCCCCCccEEeecccc
Q 044468 254 HSLQKVYINYSKFRHATW--LVLAPRAKVIRISNCQ 287 (396)
Q Consensus 254 ~~L~~L~l~~~~l~~l~~--l~~l~~L~~L~l~~~~ 287 (396)
++|++|++++|.++.++. +..+++|+.|++++++
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 889999999988887654 5678899999988765
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=6.2e-21 Score=182.35 Aligned_cols=242 Identities=17% Similarity=0.180 Sum_probs=172.6
Q ss_pred ccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCC
Q 044468 16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWT 94 (396)
Q Consensus 16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~ 94 (396)
.+.++..+.++..+|.. -.++++.|++++|.+..+++..+..+++|++|++++| .+..++ ..+.++++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC
Confidence 46677777777777653 2357888888888887765555788888888888888 555544 56778888888888888
Q ss_pred CCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468 95 GITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL 173 (396)
Q Consensus 95 ~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 173 (396)
.++.+|.. +.++++|++|++++|. +..++...+..+++|++|++.++..... .....+.++++|+.
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~------------i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEY------------ISEGAFEGLFNLKY 200 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCE------------ECTTTTTTCTTCCE
T ss_pred cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccc------------cChhhccCCCCCCE
Confidence 88877654 6778888888888873 4455554577888888888887543321 13345677788888
Q ss_pred EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccccccccc
Q 044468 174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGF 253 (396)
Q Consensus 174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~ 253 (396)
|+++.+....++ .+..+++|+.|+++++.- .......+.++++|+.|+++.+.+..+...... .+
T Consensus 201 L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------~l 265 (452)
T 3zyi_A 201 LNLGMCNIKDMP------NLTPLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD--------GL 265 (452)
T ss_dssp EECTTSCCSSCC------CCTTCTTCCEEECTTSCC-SEECGGGGTTCTTCCEEECTTSCCCEECTTTTT--------TC
T ss_pred EECCCCcccccc------cccccccccEEECcCCcC-cccCcccccCccCCCEEEeCCCcCceECHHHhc--------CC
Confidence 888777765543 355666788888887543 333334577888899999988888766543322 67
Q ss_pred ccCcEeEEeCceeecCCc--cCCCCCccEEeecccc
Q 044468 254 HSLQKVYINYSKFRHATW--LVLAPRAKVIRISNCQ 287 (396)
Q Consensus 254 ~~L~~L~l~~~~l~~l~~--l~~l~~L~~L~l~~~~ 287 (396)
++|++|++++|.++.++. +..+++|++|++++++
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 889999999888877654 5678889999988765
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=2e-21 Score=176.07 Aligned_cols=244 Identities=20% Similarity=0.175 Sum_probs=149.9
Q ss_pred cEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc---cccccCCCcCCEEEccC
Q 044468 17 TRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL---PLGILNLVSLQHLDLSW 93 (396)
Q Consensus 17 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l---~~~l~~l~~L~~L~l~~ 93 (396)
+.++.++++++.+|.. ..++|+.|++++|.+..++..++..+++|++|++++| .++.. +..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC
Confidence 5677777777777653 2357888888888877777765678888888888887 55433 44555678888888888
Q ss_pred CCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468 94 TGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL 173 (396)
Q Consensus 94 ~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 173 (396)
|.+..+|..+..+++|++|++++|......+...+..+++|++|++.+|.+... ....+..+++|+.
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~ 154 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-------------FNGIFNGLSSLEV 154 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-------------STTTTTTCTTCCE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-------------chhhcccCcCCCE
Confidence 877777777777888888888877443332213377778888888888776652 3445666677777
Q ss_pred EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccccccccc
Q 044468 174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGF 253 (396)
Q Consensus 174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~ 253 (396)
|++.++...... ....+.++++|+.|+++++.- .......+..+++|++|+++.+.+..+..... ..+
T Consensus 155 L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------~~l 222 (306)
T 2z66_A 155 LKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY--------KCL 222 (306)
T ss_dssp EECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCCSBCCSGGG--------TTC
T ss_pred EECCCCcccccc---chhHHhhCcCCCEEECCCCCc-CCcCHHHhcCCCCCCEEECCCCccCccChhhc--------cCc
Confidence 776665543200 012344455566666665432 22222235556666666666655554332111 145
Q ss_pred ccCcEeEEeCceeecCC--ccCCCC-CccEEeecccc
Q 044468 254 HSLQKVYINYSKFRHAT--WLVLAP-RAKVIRISNCQ 287 (396)
Q Consensus 254 ~~L~~L~l~~~~l~~l~--~l~~l~-~L~~L~l~~~~ 287 (396)
++|++|++++|.++... .+..++ +|++|++++++
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 66666666666555432 244443 66666666554
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=1.1e-20 Score=180.27 Aligned_cols=274 Identities=21% Similarity=0.212 Sum_probs=154.5
Q ss_pred ccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccC
Q 044468 14 KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSW 93 (396)
Q Consensus 14 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~ 93 (396)
++|++|++++|.+..++.. .++|++|++++|.+..+| + +..+++|++|++++| .++.+|..+ .+|++|++++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGN 182 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCS
T ss_pred CCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcC
Confidence 5677777777777665432 268888888888887777 3 788888889988888 666666543 5888888888
Q ss_pred CCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468 94 TGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL 173 (396)
Q Consensus 94 ~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 173 (396)
|.++.+| .++++++|++|++++|. ...+|.. .++|++|++.+|.+... ..+..+++|+.
T Consensus 183 n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~----~~~L~~L~l~~n~l~~l---------------p~~~~l~~L~~ 241 (454)
T 1jl5_A 183 NQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL----PLSLESIVAGNNILEEL---------------PELQNLPFLTT 241 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC----CTTCCEEECCSSCCSSC---------------CCCTTCTTCCE
T ss_pred CcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC----cCcccEEECcCCcCCcc---------------cccCCCCCCCE
Confidence 8888777 57888888888888874 3344432 25788888888876642 13667777887
Q ss_pred EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeec----------ccc
Q 044468 174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNID----------AGE 243 (396)
Q Consensus 174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~----------~~~ 243 (396)
|+++.+....++.. .++|+.|+++++.-.. .. ..+++|+.|+++.+.++.+..- ...
T Consensus 242 L~l~~N~l~~l~~~--------~~~L~~L~l~~N~l~~-l~----~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~ 308 (454)
T 1jl5_A 242 IYADNNLLKTLPDL--------PPSLEALNVRDNYLTD-LP----ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 308 (454)
T ss_dssp EECCSSCCSSCCSC--------CTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSC
T ss_pred EECCCCcCCccccc--------ccccCEEECCCCcccc-cC----cccCcCCEEECcCCccCcccCcCCcCCEEECcCCc
Confidence 77777766543321 2346777776543211 11 1125566666665555432100 000
Q ss_pred ccccccccccccCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCC
Q 044468 244 VKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGL 323 (396)
Q Consensus 244 ~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 323 (396)
-..++. ..++|++|++++|.++.++.. +++|++|+++++. ++.+. . .+++|++|+++++
T Consensus 309 l~~i~~--~~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~L~~N~-l~~lp--------------~--~l~~L~~L~L~~N 367 (454)
T 1jl5_A 309 IRSLCD--LPPSLEELNVSNNKLIELPAL--PPRLERLIASFNH-LAEVP--------------E--LPQNLKQLHVEYN 367 (454)
T ss_dssp CSEECC--CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSC-CSCCC--------------C--CCTTCCEEECCSS
T ss_pred CCcccC--CcCcCCEEECCCCcccccccc--CCcCCEEECCCCc-ccccc--------------c--hhhhccEEECCCC
Confidence 000000 124566666666655554432 4666666666553 33331 1 3566777777666
Q ss_pred cccc--cccCCCCCC-------------CCcceEEeccCcccc
Q 044468 324 QNLK--SIHSSYLPF-------------PRLKEICVWKCAELK 351 (396)
Q Consensus 324 ~~l~--~~~~~~~~~-------------~~L~~L~i~~c~~L~ 351 (396)
.--. .++.....+ ++|+.|++.+++ ++
T Consensus 368 ~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~ 409 (454)
T 1jl5_A 368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LR 409 (454)
T ss_dssp CCSSCCCCCTTCCEEECCC------------------------
T ss_pred CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CC
Confidence 3222 233333333 567777776654 44
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=1.9e-22 Score=183.67 Aligned_cols=235 Identities=13% Similarity=0.066 Sum_probs=144.5
Q ss_pred cccEEEcccccccccc-CC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEcc
Q 044468 15 EITRMSLMQNAIQNLT-ET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLS 92 (396)
Q Consensus 15 ~L~~L~l~~~~~~~l~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~ 92 (396)
.++..+++.+.+.... .. ..+++|+.|++++|.+..+++..+..+++|++|++++| .+...+. +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECc
Confidence 3455566666665532 22 56778889999988888777655888889999999888 6665544 7788889999998
Q ss_pred CCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCc
Q 044468 93 WTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLN 172 (396)
Q Consensus 93 ~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 172 (396)
+|.++.++ ..++|++|++++|. ...++ ...+++|++|++.+|.+... ....+..+++|+
T Consensus 89 ~n~l~~l~----~~~~L~~L~l~~n~-l~~~~---~~~~~~L~~L~l~~N~l~~~-------------~~~~~~~l~~L~ 147 (317)
T 3o53_A 89 NNYVQELL----VGPSIETLHAANNN-ISRVS---CSRGQGKKNIYLANNKITML-------------RDLDEGCRSRVQ 147 (317)
T ss_dssp SSEEEEEE----ECTTCCEEECCSSC-CSEEE---ECCCSSCEEEECCSSCCCSG-------------GGBCTGGGSSEE
T ss_pred CCcccccc----CCCCcCEEECCCCc-cCCcC---ccccCCCCEEECCCCCCCCc-------------cchhhhccCCCC
Confidence 88877665 34788888888874 33333 23467888888888887763 334556667777
Q ss_pred EEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccc
Q 044468 173 LLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRG 252 (396)
Q Consensus 173 ~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~ 252 (396)
.|+++.+......... ....+++|+.|+++++.-..... ...+++|++|+++.+.++.+..... .
T Consensus 148 ~L~Ls~N~l~~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~---------~ 212 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAE---LAASSDTLEHLNLQYNFIYDVKG---QVVFAKLKTLDLSSNKLAFMGPEFQ---------S 212 (317)
T ss_dssp EEECTTSCCCEEEGGG---GGGGTTTCCEEECTTSCCCEEEC---CCCCTTCCEEECCSSCCCEECGGGG---------G
T ss_pred EEECCCCCCCcccHHH---HhhccCcCCEEECCCCcCccccc---ccccccCCEEECCCCcCCcchhhhc---------c
Confidence 7776666554322110 01123446666665543211111 2235566666666555554432211 4
Q ss_pred cccCcEeEEeCceeecCCc-cCCCCCccEEeecccc
Q 044468 253 FHSLQKVYINYSKFRHATW-LVLAPRAKVIRISNCQ 287 (396)
Q Consensus 253 ~~~L~~L~l~~~~l~~l~~-l~~l~~L~~L~l~~~~ 287 (396)
+++|++|++++|.++.++. +..+++|++|++++++
T Consensus 213 l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 213 AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp GTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred cCcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence 5666666666665555432 4445666666666554
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=4.1e-21 Score=174.03 Aligned_cols=238 Identities=24% Similarity=0.290 Sum_probs=188.7
Q ss_pred CCCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCcc---ChHHHhcCccccEEEeecCCCCccc
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTV---SNNFFHSMASLRVLIFLYNRSLENL 76 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~l 76 (396)
.+++.+|. ...+++++|++++|.+..++.. ..+++|+.|++++|.+..+ +.. +..+++|++|++++| .+..+
T Consensus 17 ~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n-~i~~l 93 (306)
T 2z66_A 17 KGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFN-GVITM 93 (306)
T ss_dssp SCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSC-SEEEE
T ss_pred CCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCC-ccccC
Confidence 45667764 3346899999999999998764 7899999999999988654 455 778999999999999 78888
Q ss_pred cccccCCCcCCEEEccCCCCCccch--hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhc
Q 044468 77 PLGILNLVSLQHLDLSWTGITTLPI--ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRIL 154 (396)
Q Consensus 77 ~~~l~~l~~L~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 154 (396)
|..+..+++|++|++++|.++.++. .+.++++|++|++++|......+.. +..+++|++|++.+|.+...
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~------- 165 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQEN------- 165 (306)
T ss_dssp EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGG-------
T ss_pred hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccc-------
Confidence 8889999999999999999887764 6889999999999998655555554 88999999999999987641
Q ss_pred cCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecccc
Q 044468 155 FGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDF 234 (396)
Q Consensus 155 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 234 (396)
.....+..+++|+.|+++.+....... ..+.++++|+.|+++++.- .......+..+++|+.|+++.+.+
T Consensus 166 -----~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 166 -----FLPDIFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp -----EECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCC-SBCCSGGGTTCTTCCEEECTTSCC
T ss_pred -----cchhHHhhCcCCCEEECCCCCcCCcCH----HHhcCCCCCCEEECCCCcc-CccChhhccCcccCCEeECCCCCC
Confidence 245677888999999999887765421 3456677899999998653 333333477889999999998888
Q ss_pred ceeeecccccccccccccc-ccCcEeEEeCceeec
Q 044468 235 EELNIDAGEVKRIRETRGF-HSLQKVYINYSKFRH 268 (396)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~ 268 (396)
......... .+ ++|++|++.+|.++.
T Consensus 236 ~~~~~~~~~--------~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 236 MTSKKQELQ--------HFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CBCSSSSCC--------CCCTTCCEEECTTCCEEC
T ss_pred cccCHHHHH--------hhhccCCEEEccCCCeec
Confidence 754432221 45 599999999997765
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=5.6e-20 Score=175.33 Aligned_cols=279 Identities=20% Similarity=0.186 Sum_probs=148.6
Q ss_pred ccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccC
Q 044468 14 KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSW 93 (396)
Q Consensus 14 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~ 93 (396)
++|++|++++|.+..++. ..++|+.|++++|.+..++.. .++|++|++++| .++.+| .++++++|++|++++
T Consensus 91 ~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCC----CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCC
Confidence 456666666666555543 235666666666655544321 156677777776 555565 366677777777777
Q ss_pred CCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468 94 TGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL 173 (396)
Q Consensus 94 ~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 173 (396)
|.++.+|... .+|++|++++|. ...+| . ++.+++|++|++.+|.+.+. +. ..++|+.
T Consensus 163 N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~-~~~l~~L~~L~l~~N~l~~l-----------~~------~~~~L~~ 219 (454)
T 1jl5_A 163 NSLKKLPDLP---PSLEFIAAGNNQ-LEELP-E-LQNLPFLTAIYADNNSLKKL-----------PD------LPLSLES 219 (454)
T ss_dssp SCCSCCCCCC---TTCCEEECCSSC-CSSCC-C-CTTCTTCCEEECCSSCCSSC-----------CC------CCTTCCE
T ss_pred CcCcccCCCc---ccccEEECcCCc-CCcCc-c-ccCCCCCCEEECCCCcCCcC-----------CC------CcCcccE
Confidence 7666665432 466777777663 33355 2 66677777777777665542 00 0136677
Q ss_pred EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccccccccc
Q 044468 174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGF 253 (396)
Q Consensus 174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~ 253 (396)
|++..+....++ .+.++++|+.|+++++.-. ... ..+++|+.|+++.+.++.+.. .+
T Consensus 220 L~l~~n~l~~lp------~~~~l~~L~~L~l~~N~l~-~l~----~~~~~L~~L~l~~N~l~~l~~------------~~ 276 (454)
T 1jl5_A 220 IVAGNNILEELP------ELQNLPFLTTIYADNNLLK-TLP----DLPPSLEALNVRDNYLTDLPE------------LP 276 (454)
T ss_dssp EECCSSCCSSCC------CCTTCTTCCEEECCSSCCS-SCC----SCCTTCCEEECCSSCCSCCCC------------CC
T ss_pred EECcCCcCCccc------ccCCCCCCCEEECCCCcCC-ccc----ccccccCEEECCCCcccccCc------------cc
Confidence 777666554333 2445666777777664322 111 123677777777666554221 23
Q ss_pred ccCcEeEEeCceeecCCccCCCCCccEEeeccccccceeeccc-ccccchh---ccccccccccCcceeeccCCcccccc
Q 044468 254 HSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISME-KLGEISA---EVMDNLILFGRLEYLILEGLQNLKSI 329 (396)
Q Consensus 254 ~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~ 329 (396)
++|++|++++|.++.++.+ .++|++|+++++. ++.+.... .....+. .+...-..+++|+.|+++++ .+..+
T Consensus 277 ~~L~~L~ls~N~l~~l~~~--~~~L~~L~l~~N~-l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N-~l~~l 352 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLSEL--PPNLYYLNASSNE-IRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFN-HLAEV 352 (454)
T ss_dssp TTCCEEECCSSCCSEESCC--CTTCCEEECCSSC-CSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCC
T ss_pred CcCCEEECcCCccCcccCc--CCcCCEEECcCCc-CCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCC-ccccc
Confidence 5566666666644443322 1344444444332 11110000 0000000 00000112577888888777 46666
Q ss_pred cCCCCCCCCcceEEeccCcccccCC
Q 044468 330 HSSYLPFPRLKEICVWKCAELKKLP 354 (396)
Q Consensus 330 ~~~~~~~~~L~~L~i~~c~~L~~lp 354 (396)
+. .+++|+.|++.++ ++..+|
T Consensus 353 p~---~l~~L~~L~L~~N-~l~~l~ 373 (454)
T 1jl5_A 353 PE---LPQNLKQLHVEYN-PLREFP 373 (454)
T ss_dssp CC---CCTTCCEEECCSS-CCSSCC
T ss_pred cc---hhhhccEEECCCC-CCCcCC
Confidence 55 4678888888876 455544
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=3.3e-20 Score=184.78 Aligned_cols=340 Identities=18% Similarity=0.137 Sum_probs=228.5
Q ss_pred CCCCC--ccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-
Q 044468 4 LTGAP--RIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL- 78 (396)
Q Consensus 4 l~~~~--~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~- 78 (396)
++.++ .|..+++|++|++++|.+..++.. .++++|++|++++|.+..++...|..+++|++|++++| .+..++.
T Consensus 64 i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~ 142 (635)
T 4g8a_A 64 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENF 142 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTC
T ss_pred CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChh
Confidence 44453 588999999999999999998664 78999999999999999998887999999999999999 7777764
Q ss_pred cccCCCcCCEEEccCCCCC--ccchhhhcCCcccEEecccccCCCCCCcchhcCCC------------------------
Q 044468 79 GILNLVSLQHLDLSWTGIT--TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLK------------------------ 132 (396)
Q Consensus 79 ~l~~l~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~------------------------ 132 (396)
.++++++|++|++++|.++ .+|..+..+++|++|++++|.+....+.. +..+.
T Consensus 143 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l~~~~~~~~ls~n~l~~i~~~~~ 221 (635)
T 4g8a_A 143 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMNFIQPGAF 221 (635)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc-ccchhhhhhhhhhhhcccCcccccCcccc
Confidence 5889999999999999887 46778899999999999988433221111 22111
Q ss_pred ---cccEEEeeccCccch-------------------------------h------------------------------
Q 044468 133 ---MLRALRMFECGFKVE-------------------------------Q------------------------------ 148 (396)
Q Consensus 133 ---~L~~L~l~~~~~~~~-------------------------------~------------------------------ 148 (396)
.++.+.+.++..... .
T Consensus 222 ~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 301 (635)
T 4g8a_A 222 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL 301 (635)
T ss_dssp TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT
T ss_pred cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhh
Confidence 112222222110000 0
Q ss_pred ----------------------ccc-------hhccC----C----------------chhhhHhhhcCCCCcEEEEEec
Q 044468 149 ----------------------EAD-------RILFG----D----------------SEVLVEELLALKHLNLLTVTLQ 179 (396)
Q Consensus 149 ----------------------~~~-------~~~~~----~----------------~~~~~~~l~~l~~L~~L~l~~~ 179 (396)
... .+... . ..........++.|+.+++..+
T Consensus 302 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n 381 (635)
T 4g8a_A 302 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 381 (635)
T ss_dssp TGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSS
T ss_pred hhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcc
Confidence 000 00000 0 0000111224678888887665
Q ss_pred ccchhhh----------h-----------hhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceee
Q 044468 180 IFGALQR----------L-----------LNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELN 238 (396)
Q Consensus 180 ~~~~~~~----------~-----------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~ 238 (396)
....... + .....+..+++|+.+.+..+..........+..+++++.++++.+.+....
T Consensus 382 ~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~ 461 (635)
T 4g8a_A 382 GLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 461 (635)
T ss_dssp CCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECC
T ss_pred ccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccc
Confidence 5421100 0 001234566778888887655444434345677889999999977776544
Q ss_pred eccccccccccccccccCcEeEEeCce-eecC--CccCCCCCccEEeeccccccceeecccccccchhccccccccccCc
Q 044468 239 IDAGEVKRIRETRGFHSLQKVYINYSK-FRHA--TWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRL 315 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 315 (396)
.... ..++.|+.|++.+|. ...+ ..+..+++|++|++++|. ++.++.. .+..+++|
T Consensus 462 ~~~~--------~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~------------~f~~l~~L 520 (635)
T 4g8a_A 462 NGIF--------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT------------AFNSLSSL 520 (635)
T ss_dssp TTTT--------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT------------TTTTCTTC
T ss_pred cccc--------ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChH------------HHcCCCCC
Confidence 3222 268999999999984 4432 347779999999999985 6666431 45678999
Q ss_pred ceeeccCCcccccccCC-CCCCCCcceEEeccCcccccCCCCCCCCC-CCceEEe
Q 044468 316 EYLILEGLQNLKSIHSS-YLPFPRLKEICVWKCAELKKLPLDCNQGL-EQKIIIK 368 (396)
Q Consensus 316 ~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L~~lp~~~~~~~-~~l~~~~ 368 (396)
+.|+++++ ++..++.. ...+++|+.|+++++ +++.+|+...... +.++.+.
T Consensus 521 ~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~ 573 (635)
T 4g8a_A 521 QVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLN 573 (635)
T ss_dssp CEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEE
T ss_pred CEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEE
Confidence 99999998 57666543 456899999999987 5888777655443 5676664
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=4e-20 Score=181.88 Aligned_cols=255 Identities=18% Similarity=0.141 Sum_probs=168.0
Q ss_pred cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC
Q 044468 15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT 94 (396)
Q Consensus 15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~ 94 (396)
++++|+++++.++.+|.... ++|+.|++++|.+..+|. .+++|++|++++| .++.+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC
Confidence 57788888888887776522 688888888888877765 5678888888888 6777765 5678888888888
Q ss_pred CCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEE
Q 044468 95 GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLL 174 (396)
Q Consensus 95 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 174 (396)
.++.+|. .+++|++|++++| .+..+|.. +++|++|++++|.+... . ....+|+.|
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l--------------~---~~~~~L~~L 166 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASL--------------P---ALPSELCKL 166 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCC--------------C---CCCTTCCEE
T ss_pred cCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCc--------------C---CccCCCCEE
Confidence 8887775 5677888888887 44455542 37788888888876653 0 123566767
Q ss_pred EEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccc
Q 044468 175 TVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFH 254 (396)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~ 254 (396)
.+..+....++ ..+++|+.|+++++.- .... ..+++|+.|+++.|.++.+.. .++
T Consensus 167 ~L~~N~l~~l~--------~~~~~L~~L~Ls~N~l-~~l~----~~~~~L~~L~L~~N~l~~l~~------------~~~ 221 (622)
T 3g06_A 167 WAYNNQLTSLP--------MLPSGLQELSVSDNQL-ASLP----TLPSELYKLWAYNNRLTSLPA------------LPS 221 (622)
T ss_dssp ECCSSCCSCCC--------CCCTTCCEEECCSSCC-SCCC----CCCTTCCEEECCSSCCSSCCC------------CCT
T ss_pred ECCCCCCCCCc--------ccCCCCcEEECCCCCC-CCCC----CccchhhEEECcCCcccccCC------------CCC
Confidence 77666655443 2234477777766432 2211 123567777777666654321 356
Q ss_pred cCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCCCC
Q 044468 255 SLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSSYL 334 (396)
Q Consensus 255 ~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 334 (396)
+|++|++++|.++.++ ..+++|++|+++++. ++.+.. .+++|+.|++++| .+..++....
T Consensus 222 ~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~-L~~lp~----------------~~~~L~~L~Ls~N-~L~~lp~~l~ 281 (622)
T 3g06_A 222 GLKELIVSGNRLTSLP--VLPSELKELMVSGNR-LTSLPM----------------LPSGLLSLSVYRN-QLTRLPESLI 281 (622)
T ss_dssp TCCEEECCSSCCSCCC--CCCTTCCEEECCSSC-CSCCCC----------------CCTTCCEEECCSS-CCCSCCGGGG
T ss_pred CCCEEEccCCccCcCC--CCCCcCcEEECCCCC-CCcCCc----------------ccccCcEEeCCCC-CCCcCCHHHh
Confidence 7777777777666665 446777777777663 444321 4567777777776 4666666566
Q ss_pred CCCCcceEEeccCc
Q 044468 335 PFPRLKEICVWKCA 348 (396)
Q Consensus 335 ~~~~L~~L~i~~c~ 348 (396)
.+++|+.|++.+++
T Consensus 282 ~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 282 HLSSETTVNLEGNP 295 (622)
T ss_dssp GSCTTCEEECCSCC
T ss_pred hccccCEEEecCCC
Confidence 67777777777664
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=2e-20 Score=167.72 Aligned_cols=218 Identities=19% Similarity=0.220 Sum_probs=137.3
Q ss_pred cEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccCCC
Q 044468 17 TRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSWTG 95 (396)
Q Consensus 17 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~~ 95 (396)
++++.+++++..+|.. ..++|+.|+++++.+..++...+..+++|++|++++| .++.+ |..+.++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC
Confidence 5677777777777653 3468888888888887777655788888888888888 55555 5667788888888888885
Q ss_pred -CCcc-chhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468 96 -ITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL 173 (396)
Q Consensus 96 -l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 173 (396)
++.+ |..+..+++|++|++++|.... ++...+..+++|++|++.+|.+... ....+..+++|+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQAL-------------PDDTFRDLGNLTH 157 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTCCE
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCE-ECHhHhhCCcCCCEEECCCCccccc-------------CHhHhccCCCccE
Confidence 7766 5567788888888888874443 4333377788888888888877653 3334556666666
Q ss_pred EEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccccccccc
Q 044468 174 LTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGF 253 (396)
Q Consensus 174 L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~ 253 (396)
|++..+....++. ..+..+++|++|+++.+.+..+..... +.+
T Consensus 158 L~l~~n~l~~~~~-----------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~l 200 (285)
T 1ozn_A 158 LFLHGNRISSVPE-----------------------------RAFRGLHSLDRLLLHQNRVAHVHPHAF--------RDL 200 (285)
T ss_dssp EECCSSCCCEECT-----------------------------TTTTTCTTCCEEECCSSCCCEECTTTT--------TTC
T ss_pred EECCCCcccccCH-----------------------------HHhcCccccCEEECCCCcccccCHhHc--------cCc
Confidence 6665554432211 113334455555555444443322111 144
Q ss_pred ccCcEeEEeCceeecCCc--cCCCCCccEEeecccc
Q 044468 254 HSLQKVYINYSKFRHATW--LVLAPRAKVIRISNCQ 287 (396)
Q Consensus 254 ~~L~~L~l~~~~l~~l~~--l~~l~~L~~L~l~~~~ 287 (396)
++|++|++++|.++.++. +..+++|++|++++++
T Consensus 201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 555555555555555442 4455566666665544
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=1.9e-21 Score=177.06 Aligned_cols=271 Identities=15% Similarity=0.082 Sum_probs=202.1
Q ss_pred CCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCCCCCccchhhhcCCcccEEecc
Q 044468 37 HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLE 115 (396)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~ 115 (396)
.++..+++.+.+...+...+..+++|++|++++| .++.++ ..+.++++|++|++++|.++..+. +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 3455566666666666665778889999999999 666554 678999999999999999986665 8899999999999
Q ss_pred cccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCC
Q 044468 116 YTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSR 195 (396)
Q Consensus 116 ~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 195 (396)
+|. ... +...++|++|++.+|.+... . ...+++|+.|+++.+....... ..+.+
T Consensus 89 ~n~-l~~-----l~~~~~L~~L~l~~n~l~~~-------------~---~~~~~~L~~L~l~~N~l~~~~~----~~~~~ 142 (317)
T 3o53_A 89 NNY-VQE-----LLVGPSIETLHAANNNISRV-------------S---CSRGQGKKNIYLANNKITMLRD----LDEGC 142 (317)
T ss_dssp SSE-EEE-----EEECTTCCEEECCSSCCSEE-------------E---ECCCSSCEEEECCSSCCCSGGG----BCTGG
T ss_pred CCc-ccc-----ccCCCCcCEEECCCCccCCc-------------C---ccccCCCCEEECCCCCCCCccc----hhhhc
Confidence 984 333 33458999999999988764 1 2236789999999888766543 23456
Q ss_pred CcccceEEecccCCCcccchhhh-hccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCCc-cC
Q 044468 196 SINTQSLCLRHLNNSNLLSAFSF-ASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW-LV 273 (396)
Q Consensus 196 ~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-l~ 273 (396)
+++|+.|+++++.- .......+ ..+++|++|+++.+.++.+.... .+++|++|++++|.++.++. +.
T Consensus 143 l~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------~l~~L~~L~Ls~N~l~~l~~~~~ 211 (317)
T 3o53_A 143 RSRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYNFIYDVKGQV----------VFAKLKTLDLSSNKLAFMGPEFQ 211 (317)
T ss_dssp GSSEEEEECTTSCC-CEEEGGGGGGGTTTCCEEECTTSCCCEEECCC----------CCTTCCEEECCSSCCCEECGGGG
T ss_pred cCCCCEEECCCCCC-CcccHHHHhhccCcCCEEECCCCcCccccccc----------ccccCCEEECCCCcCCcchhhhc
Confidence 67799999988643 33322233 46789999999988888663211 57899999999998877643 67
Q ss_pred CCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCccc-ccccCCCCCCCCcceEEeccCccccc
Q 044468 274 LAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNL-KSIHSSYLPFPRLKEICVWKCAELKK 352 (396)
Q Consensus 274 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~i~~c~~L~~ 352 (396)
.+++|++|+++++. ++.+.. .+..+++|+.|++++++-. ..++.....+++|+.+++.++..++.
T Consensus 212 ~l~~L~~L~L~~N~-l~~l~~-------------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 212 SAAGVTWISLRNNK-LVLIEK-------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp GGTTCSEEECTTSC-CCEECT-------------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred ccCcccEEECcCCc-ccchhh-------------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 78999999999885 665543 4567899999999998644 24444566788999999988888877
Q ss_pred CCCCCCCC
Q 044468 353 LPLDCNQG 360 (396)
Q Consensus 353 lp~~~~~~ 360 (396)
.++.....
T Consensus 278 ~~~~~~~~ 285 (317)
T 3o53_A 278 QNEEECTV 285 (317)
T ss_dssp SSSCCCSS
T ss_pred CchhccCC
Confidence 65544433
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=1.2e-21 Score=178.08 Aligned_cols=250 Identities=14% Similarity=0.104 Sum_probs=153.9
Q ss_pred cCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccC--ccChHHHh-------cCccccEEEeecCCCCcccccc
Q 044468 10 IGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLG--TVSNNFFH-------SMASLRVLIFLYNRSLENLPLG 79 (396)
Q Consensus 10 ~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~--~~~~~~~~-------~l~~L~~L~l~~~~~~~~l~~~ 79 (396)
++..++|+++++++|.+ .+|.. ... |+.|+++++.+. .++.. +. .+++|++|++++|...+.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34456788888888888 65553 222 888888888774 35554 33 6899999999999333367776
Q ss_pred c--cCCCcCCEEEccCCCCCccchhhhcC-----CcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccch
Q 044468 80 I--LNLVSLQHLDLSWTGITTLPIELKYL-----VNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADR 152 (396)
Q Consensus 80 l--~~l~~L~~L~l~~~~l~~l~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 152 (396)
+ +.+++|++|++++|.++.+|..+..+ ++|++|++++|.. ..++...++.+++|++|++++|.+.+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~----- 188 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGE----- 188 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCCCSSCCEEECCSCTTCHH-----
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhccCCCCCEEECCCCCcCcc-----
Confidence 5 78999999999999998778777776 8999999999854 444433388999999999999986541
Q ss_pred hccCCchhhhHhh--hcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeee
Q 044468 153 ILFGDSEVLVEEL--LALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLY 230 (396)
Q Consensus 153 ~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 230 (396)
...+..+ ..+++|+.|+++.+.....+.... ..+.++++|+.|+++++.-........+..+++|++|+++
T Consensus 189 ------~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 189 ------RGLISALCPLKFPTLQVLALRNAGMETPSGVCS-ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp ------HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH-HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred ------hHHHHHHHhccCCCCCEEECCCCcCcchHHHHH-HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence 1123333 677777777777776653332211 0011233466666655432221111123334555555555
Q ss_pred ccccceeeeccccccccccccccccCcEeEEeCceeecCCccCCCCCccEEeecccc
Q 044468 231 FNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQ 287 (396)
Q Consensus 231 ~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~ 287 (396)
.|.++.+. .. .+++|++|++++|.++.++.+..+++|++|++++++
T Consensus 262 ~N~l~~ip----------~~-~~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 262 FTGLKQVP----------KG-LPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp TSCCSSCC----------SS-CCSEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCT
T ss_pred CCccChhh----------hh-ccCCceEEECCCCCCCCChhHhhCCCCCEEeccCCC
Confidence 55554221 11 124555555555555555445555555555555543
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=2.9e-19 Score=175.85 Aligned_cols=246 Identities=21% Similarity=0.183 Sum_probs=196.7
Q ss_pred CCCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccccc
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL 81 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~ 81 (396)
.+++.+|..- .++|++|++++|.++.++. .+++|++|++++|.+..+|. .+++|++|++++| .+..+|.
T Consensus 50 n~L~~lp~~l-~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~~--- 118 (622)
T 3g06_A 50 SGLTTLPDCL-PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHLPA--- 118 (622)
T ss_dssp SCCSCCCSCC-CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCCCCC---
T ss_pred CCcCccChhh-CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCCCCC---
Confidence 3556666422 2799999999999998876 78999999999999988875 7799999999999 7888876
Q ss_pred CCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhh
Q 044468 82 NLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVL 161 (396)
Q Consensus 82 ~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 161 (396)
.+++|++|++++|.++.+|.. +++|++|++++| ....+|. .+++|+.|++.+|.++..
T Consensus 119 ~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~l-------------- 176 (622)
T 3g06_A 119 LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTSL-------------- 176 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCC--------------
T ss_pred CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCCC--------------
Confidence 578999999999999998864 589999999998 4455554 357899999999988864
Q ss_pred hHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecc
Q 044468 162 VEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDA 241 (396)
Q Consensus 162 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~ 241 (396)
. ..+++|+.|+++.+....++.. .++|+.|++.++.-. ... ..+++|+.|++++|.++.+.
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~l~~~--------~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~L~~lp--- 237 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLASLPTL--------PSELYKLWAYNNRLT-SLP----ALPSGLKELIVSGNRLTSLP--- 237 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSCCCCC--------CTTCCEEECCSSCCS-SCC----CCCTTCCEEECCSSCCSCCC---
T ss_pred c---ccCCCCcEEECCCCCCCCCCCc--------cchhhEEECcCCccc-ccC----CCCCCCCEEEccCCccCcCC---
Confidence 1 4568899999999887654421 245999999876432 221 23578999999988887543
Q ss_pred ccccccccccccccCcEeEEeCceeecCCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeecc
Q 044468 242 GEVKRIRETRGFHSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILE 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 321 (396)
. .+++|++|++++|.++.++. .+++|++|++++|. ++.++. .+..+++|+.|+++
T Consensus 238 --------~-~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~-L~~lp~-------------~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 238 --------V-LPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQ-LTRLPE-------------SLIHLSSETTVNLE 292 (622)
T ss_dssp --------C-CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CCSCCG-------------GGGGSCTTCEEECC
T ss_pred --------C-CCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCC-CCcCCH-------------HHhhccccCEEEec
Confidence 1 68999999999998888877 68999999999985 665543 56789999999999
Q ss_pred CCc
Q 044468 322 GLQ 324 (396)
Q Consensus 322 ~~~ 324 (396)
+++
T Consensus 293 ~N~ 295 (622)
T 3g06_A 293 GNP 295 (622)
T ss_dssp SCC
T ss_pred CCC
Confidence 986
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=3e-19 Score=170.67 Aligned_cols=242 Identities=18% Similarity=0.149 Sum_probs=188.7
Q ss_pred CCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccCCCCCccc-hhhhcCCcccEEec
Q 044468 37 HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSWTGITTLP-IELKYLVNLKCLNL 114 (396)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l 114 (396)
..+.+++.+..+..+|.. + .+++++|++++| .+..+ +..+.++++|++|++++|.++.++ ..+.++++|++|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~-~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQG-I--PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSSCCSC-C--CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCccCCC-C--CCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 456788888888888875 2 368999999999 66655 567899999999999999999665 56889999999999
Q ss_pred ccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEec-ccchhhhhhhccCC
Q 044468 115 EYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQ-IFGALQRLLNYCNS 193 (396)
Q Consensus 115 ~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~l 193 (396)
++|. +..++...+..+++|++|++++|.+... ....+.++++|+.|++..+ ....++. ..+
T Consensus 131 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~l~~~~~l~~i~~----~~~ 192 (452)
T 3zyi_A 131 FDNW-LTVIPSGAFEYLSKLRELWLRNNPIESI-------------PSYAFNRVPSLMRLDLGELKKLEYISE----GAF 192 (452)
T ss_dssp CSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEE-------------CTTTTTTCTTCCEEECCCCTTCCEECT----TTT
T ss_pred CCCc-CCccChhhhcccCCCCEEECCCCCccee-------------CHhHHhcCCcccEEeCCCCCCccccCh----hhc
Confidence 9984 5566666588999999999999998864 4557888999999998873 3332221 346
Q ss_pred CCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCC--c
Q 044468 194 SRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT--W 271 (396)
Q Consensus 194 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~ 271 (396)
.++++|+.|+++++.-.... .+..+++|+.|+++.|.+..+...... .+++|++|++.+|.++.+. .
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~ 261 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDMP---NLTPLVGLEELEMSGNHFPEIRPGSFH--------GLSSLKKLWVMNSQVSLIERNA 261 (452)
T ss_dssp TTCTTCCEEECTTSCCSSCC---CCTTCTTCCEEECTTSCCSEECGGGGT--------TCTTCCEEECTTSCCCEECTTT
T ss_pred cCCCCCCEEECCCCcccccc---cccccccccEEECcCCcCcccCccccc--------CccCCCEEEeCCCcCceECHHH
Confidence 67788999999886543322 367889999999999888876543322 7899999999999777753 4
Q ss_pred cCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCc
Q 044468 272 LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQ 324 (396)
Q Consensus 272 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 324 (396)
+..+++|++|+++++. ++.+.. .....+++|+.|++.+++
T Consensus 262 ~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 FDGLASLVELNLAHNN-LSSLPH------------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTCTTCCEEECCSSC-CSCCCT------------TSSTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCc-CCccCh------------HHhccccCCCEEEccCCC
Confidence 7789999999999885 565543 134568999999998875
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=2.4e-19 Score=170.70 Aligned_cols=242 Identities=19% Similarity=0.150 Sum_probs=189.8
Q ss_pred CCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCCCCCccc-hhhhcCCcccEEec
Q 044468 37 HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWTGITTLP-IELKYLVNLKCLNL 114 (396)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l 114 (396)
..+.+++.+..+..+|.. + .+++++|++++| .+..++ ..+.++++|++|++++|.++.++ ..+.++++|++|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~-~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDG-I--STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSSCCSC-C--CTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCcCCCC-C--CCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 467888888889999876 3 378999999999 676654 67899999999999999999766 46889999999999
Q ss_pred ccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecc-cchhhhhhhccCC
Q 044468 115 EYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQI-FGALQRLLNYCNS 193 (396)
Q Consensus 115 ~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l 193 (396)
++| .+..++...+..+++|++|++.+|.+... ....+.++++|+.|++..+. ...++. ..+
T Consensus 120 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-------------~~~~~~~l~~L~~L~l~~~~~l~~i~~----~~~ 181 (440)
T 3zyj_A 120 FDN-RLTTIPNGAFVYLSKLKELWLRNNPIESI-------------PSYAFNRIPSLRRLDLGELKRLSYISE----GAF 181 (440)
T ss_dssp CSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEE-------------CTTTTTTCTTCCEEECCCCTTCCEECT----TTT
T ss_pred CCC-cCCeeCHhHhhccccCceeeCCCCccccc-------------CHHHhhhCcccCEeCCCCCCCcceeCc----chh
Confidence 998 55566665589999999999999998864 45577889999999988743 222221 346
Q ss_pred CCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCC--c
Q 044468 194 SRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT--W 271 (396)
Q Consensus 194 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~ 271 (396)
.++++|+.|+++++.-.... .+..+++|++|+++.|.++.+...... .+++|++|++.+|.++.++ .
T Consensus 182 ~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~ 250 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNLREIP---NLTPLIKLDELDLSGNHLSAIRPGSFQ--------GLMHLQKLWMIQSQIQVIERNA 250 (440)
T ss_dssp TTCSSCCEEECTTSCCSSCC---CCTTCSSCCEEECTTSCCCEECTTTTT--------TCTTCCEEECTTCCCCEECTTS
T ss_pred hcccccCeecCCCCcCcccc---ccCCCcccCEEECCCCccCccChhhhc--------cCccCCEEECCCCceeEEChhh
Confidence 67788999999986443222 367889999999998888876543322 7899999999999777754 4
Q ss_pred cCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCc
Q 044468 272 LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQ 324 (396)
Q Consensus 272 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 324 (396)
+..+++|++|+++++. ++.+.. ..+..+++|+.|++.+++
T Consensus 251 ~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 FDNLQSLVEINLAHNN-LTLLPH------------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp STTCTTCCEEECTTSC-CCCCCT------------TTTSSCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCC-CCccCh------------hHhccccCCCEEEcCCCC
Confidence 7789999999999885 565543 134568999999998875
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=3.2e-19 Score=159.87 Aligned_cols=166 Identities=26% Similarity=0.341 Sum_probs=135.4
Q ss_pred CCCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cc
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PL 78 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~ 78 (396)
.+++.+|. +..+++++|++++|.+..++.. ..+++|++|++++|.+..+.+..+..+++|++|++++|..++.+ |.
T Consensus 21 ~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 21 QGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp SCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred CCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH
Confidence 45666663 3457999999999999997643 88999999999999998875555899999999999999437766 57
Q ss_pred cccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468 79 GILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGD 157 (396)
Q Consensus 79 ~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 157 (396)
.+..+++|++|++++|.++.+ |..+.++++|++|++++|. ...++...++.+++|++|++.+|.++..
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------- 168 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSV---------- 168 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEE----------
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccccc----------
Confidence 788999999999999999866 5568899999999999984 4556655588999999999999988763
Q ss_pred chhhhHhhhcCCCCcEEEEEecccc
Q 044468 158 SEVLVEELLALKHLNLLTVTLQIFG 182 (396)
Q Consensus 158 ~~~~~~~l~~l~~L~~L~l~~~~~~ 182 (396)
....+..+++|+.|++..+...
T Consensus 169 ---~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 169 ---PERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ---CTTTTTTCTTCCEEECCSSCCC
T ss_pred ---CHHHhcCccccCEEECCCCccc
Confidence 3345777888888887776543
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=2.3e-21 Score=185.85 Aligned_cols=324 Identities=17% Similarity=0.110 Sum_probs=167.7
Q ss_pred CCCccccEEEcccccccc-----ccCC-CCCCCCcEEEccCCccCcc-ChHHHhcCc----cccEEEeecCCCCc-----
Q 044468 11 GMWKEITRMSLMQNAIQN-----LTET-PTCPHLRALFLHSNHLGTV-SNNFFHSMA----SLRVLIFLYNRSLE----- 74 (396)
Q Consensus 11 ~~~~~L~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~l~----~L~~L~l~~~~~~~----- 74 (396)
..+++|++|++++|.+.. ++.. ..+++|++|++++|.+.+. +..++..++ +|++|++++| .++
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~ 103 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCG 103 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHH
Confidence 345556666666665542 2333 4455666666666555321 122223333 4666666655 333
Q ss_pred cccccccCCCcCCEEEccCCCCCcc-chhh-----hcCCcccEEecccccCCCC----CCcchhcCCCcccEEEeeccCc
Q 044468 75 NLPLGILNLVSLQHLDLSWTGITTL-PIEL-----KYLVNLKCLNLEYTFCLSR----IPQPVISDLKMLRALRMFECGF 144 (396)
Q Consensus 75 ~l~~~l~~l~~L~~L~l~~~~l~~l-~~~l-----~~l~~L~~L~l~~~~~~~~----~~~~~i~~l~~L~~L~l~~~~~ 144 (396)
.++..+..+++|++|++++|.++.. +..+ ...++|++|++++|..... ++.. +..+++|++|++++|.+
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV-LRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH-HHHCTTCCEEECCSSBC
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH-HhhCCCCCEEECcCCCc
Confidence 2344455555555555555554411 1111 1133455555555432221 1111 33345555555555443
Q ss_pred cchhccc---------------hhcc-----CCchhhhHhhhcCCCCcEEEEEecccchhhhhhh-ccCCCCCcccceEE
Q 044468 145 KVEQEAD---------------RILF-----GDSEVLVEELLALKHLNLLTVTLQIFGALQRLLN-YCNSSRSINTQSLC 203 (396)
Q Consensus 145 ~~~~~~~---------------~~~~-----~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~l~~~~~L~~L~ 203 (396)
....... .+.. .........+..+++|+.|+++.+.........- .....++++|+.|+
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence 3210000 0000 0011235566677888888888776543211100 01122456688888
Q ss_pred ecccCCCcccc----hhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCC------ccC
Q 044468 204 LRHLNNSNLLS----AFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT------WLV 273 (396)
Q Consensus 204 l~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~------~l~ 273 (396)
++++. .+... ...+..+++|++|+++.+.+.+.+...... .+. . ..++|++|++.+|.+++.. .+.
T Consensus 263 L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-~l~-~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 338 (461)
T 1z7x_W 263 IWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE-TLL-E-PGCQLESLWVKSCSFTAACCSHFSSVLA 338 (461)
T ss_dssp CTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH-HHT-S-TTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred CcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH-Hhc-c-CCccceeeEcCCCCCchHHHHHHHHHHh
Confidence 88763 33322 123556788888888877776443321111 000 0 2368999999998766532 245
Q ss_pred CCCCccEEeeccccccceeecccccccchhcccccc-ccccCcceeeccCCcccc-----cccCCCCCCCCcceEEeccC
Q 044468 274 LAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNL-ILFGRLEYLILEGLQNLK-----SIHSSYLPFPRLKEICVWKC 347 (396)
Q Consensus 274 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~L~~L~i~~c 347 (396)
.+++|++|+++++. +.+.....+. ... ...++|++|++++|. +. .++.....+++|+.|++.+|
T Consensus 339 ~~~~L~~L~Ls~n~-i~~~~~~~l~--------~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 339 QNRFLLELQISNNR-LEDAGVRELC--------QGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HCSSCCEEECCSSB-CHHHHHHHHH--------HHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred hCCCccEEEccCCc-cccccHHHHH--------HHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCC
Confidence 57999999999885 4433111100 011 126799999999984 55 44444556899999999988
Q ss_pred cccc
Q 044468 348 AELK 351 (396)
Q Consensus 348 ~~L~ 351 (396)
+ +.
T Consensus 409 ~-i~ 411 (461)
T 1z7x_W 409 C-LG 411 (461)
T ss_dssp S-CC
T ss_pred C-CC
Confidence 5 44
No 65
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=2.7e-20 Score=184.11 Aligned_cols=304 Identities=13% Similarity=0.130 Sum_probs=154.3
Q ss_pred CCccccEEEccccccccc-----cCC-CCCCCCcEEEccCCccCccC----hHHHhcCccccEEEeecCCCCcccccccc
Q 044468 12 MWKEITRMSLMQNAIQNL-----TET-PTCPHLRALFLHSNHLGTVS----NNFFHSMASLRVLIFLYNRSLENLPLGIL 81 (396)
Q Consensus 12 ~~~~L~~L~l~~~~~~~l-----~~~-~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~l~~~l~ 81 (396)
.+++|++|++++|.+.+. +.. ..+++|+.|+++++.+..+. ...+..+++|++|++++| .+..++..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHh
Confidence 567888888888876432 222 56778888888877664222 122567788888888887 5555666666
Q ss_pred CCCcCCEEEccCCC-C---CccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468 82 NLVSLQHLDLSWTG-I---TTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGD 157 (396)
Q Consensus 82 ~l~~L~~L~l~~~~-l---~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 157 (396)
++++|++|+++... . ...+..+..+++|+.+++.++ ....++.. +..+++|++|++.+|.+...
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~~~---------- 308 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLETE---------- 308 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCCHH----------
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCCHH----------
Confidence 66777777775321 1 122223444455555555443 22233332 44455555555555543321
Q ss_pred chhhhHhhhcC------------------------CCCcEEEEEe-----------cccchhhhhhhccCCCCCcccceE
Q 044468 158 SEVLVEELLAL------------------------KHLNLLTVTL-----------QIFGALQRLLNYCNSSRSINTQSL 202 (396)
Q Consensus 158 ~~~~~~~l~~l------------------------~~L~~L~l~~-----------~~~~~~~~~~~~~~l~~~~~L~~L 202 (396)
.....+..+ ++|+.|++.. +.... ..+.. ....+++|+.|
T Consensus 309 --~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~~~~~--l~~~~~~L~~L 383 (592)
T 3ogk_B 309 --DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-RGLIA--LAQGCQELEYM 383 (592)
T ss_dssp --HHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH-HHHHH--HHHHCTTCSEE
T ss_pred --HHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH-HHHHH--HHhhCccCeEE
Confidence 111223344 4455454442 11110 00000 01123335555
Q ss_pred EecccCCCcccchhhhhc-cccccceeee----ccccceeeecccccccccc-ccccccCcEeEEeCc--eeec--CCcc
Q 044468 203 CLRHLNNSNLLSAFSFAS-LRHLWTLHLY----FNDFEELNIDAGEVKRIRE-TRGFHSLQKVYINYS--KFRH--ATWL 272 (396)
Q Consensus 203 ~l~~~~~~~~~~~~~l~~-~~~L~~L~l~----~~~i~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~--~l~~--l~~l 272 (396)
.+ .+...+......+.. +++|++|+++ ++.+++...+. + ++. ...+++|++|++++| .+++ +..+
T Consensus 384 ~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~---~-~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~ 458 (592)
T 3ogk_B 384 AV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN---G-VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458 (592)
T ss_dssp EE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH---H-HHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred Ee-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH---H-HHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence 55 223333332222332 4555555554 33333221100 0 000 014677777777654 2333 2222
Q ss_pred C-CCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCccccc--ccCCCCCCCCcceEEeccCcc
Q 044468 273 V-LAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKS--IHSSYLPFPRLKEICVWKCAE 349 (396)
Q Consensus 273 ~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~i~~c~~ 349 (396)
+ .+++|++|++++|. +++. +.......+++|++|++++|+ +.. ++.....+++|+.|++++|.
T Consensus 459 ~~~~~~L~~L~L~~n~-l~~~-----------~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~- 524 (592)
T 3ogk_B 459 GQYSPNVRWMLLGYVG-ESDE-----------GLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR- 524 (592)
T ss_dssp HHSCTTCCEEEECSCC-SSHH-----------HHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-
T ss_pred HHhCccceEeeccCCC-CCHH-----------HHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-
Confidence 2 36777777777664 3221 111234568999999999997 543 22223458999999999997
Q ss_pred ccc
Q 044468 350 LKK 352 (396)
Q Consensus 350 L~~ 352 (396)
++.
T Consensus 525 it~ 527 (592)
T 3ogk_B 525 ASM 527 (592)
T ss_dssp CCT
T ss_pred CCH
Confidence 554
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=8.5e-19 Score=158.74 Aligned_cols=195 Identities=18% Similarity=0.185 Sum_probs=89.4
Q ss_pred CCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEe
Q 044468 34 TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLN 113 (396)
Q Consensus 34 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~ 113 (396)
.+++|+.|+++++.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.++.++ .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 34444444444444444432 444444444444444 3443333 444444444444444444443 344444455555
Q ss_pred cccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCC
Q 044468 114 LEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNS 193 (396)
Q Consensus 114 l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l 193 (396)
+++|. ...++. +..+++|++|++.+|.+... ..+..+++|+.|+++.+.....+. +
T Consensus 114 l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~---------------~~l~~l~~L~~L~l~~n~l~~~~~------l 169 (308)
T 1h6u_A 114 LTSTQ-ITDVTP--LAGLSNLQVLYLDLNQITNI---------------SPLAGLTNLQYLSIGNAQVSDLTP------L 169 (308)
T ss_dssp CTTSC-CCCCGG--GTTCTTCCEEECCSSCCCCC---------------GGGGGCTTCCEEECCSSCCCCCGG------G
T ss_pred CCCCC-CCCchh--hcCCCCCCEEECCCCccCcC---------------ccccCCCCccEEEccCCcCCCChh------h
Confidence 44442 222222 44444555555544444332 114444445545444444333221 2
Q ss_pred CCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCC
Q 044468 194 SRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT 270 (396)
Q Consensus 194 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~ 270 (396)
.++++|+.|+++++.-. ... .+..+++|++|+++.+.+.++.. . ..+++|++|++.+|.++..+
T Consensus 170 ~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~N~l~~~~~--l--------~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKIS-DIS--PLASLPNLIEVHLKNNQISDVSP--L--------ANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp TTCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEECTTSCCCBCGG--G--------TTCTTCCEEEEEEEEEECCC
T ss_pred cCCCCCCEEECCCCccC-cCh--hhcCCCCCCEEEccCCccCcccc--c--------cCCCCCCEEEccCCeeecCC
Confidence 33344555555543221 111 14555666666666555554321 0 15667777777776665543
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=1.1e-19 Score=174.99 Aligned_cols=216 Identities=14% Similarity=0.080 Sum_probs=127.2
Q ss_pred CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEE
Q 044468 33 PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCL 112 (396)
Q Consensus 33 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L 112 (396)
..+++|+.|++++|.+..+++..+..+++|++|++++| .+...++ ++.+++|++|++++|.++.+|. .++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 34456777777777776665444677777777777777 5554433 6677777777777776665543 2667777
Q ss_pred ecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccC
Q 044468 113 NLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCN 192 (396)
Q Consensus 113 ~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 192 (396)
++++|.+ ..++. ..+++|++|++.+|.+.+. ....+..+++|+.|+++.+....... ..
T Consensus 105 ~L~~N~l-~~~~~---~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~ 163 (487)
T 3oja_A 105 HAANNNI-SRVSC---SRGQGKKNIYLANNKITML-------------RDLDEGCRSRVQYLDLKLNEIDTVNF----AE 163 (487)
T ss_dssp ECCSSCC-CCEEE---CCCSSCEEEECCSSCCCSG-------------GGBCGGGGSSEEEEECTTSCCCEEEG----GG
T ss_pred ECcCCcC-CCCCc---cccCCCCEEECCCCCCCCC-------------CchhhcCCCCCCEEECCCCCCCCcCh----HH
Confidence 7777633 33332 2456677777777766653 33445556666666666555443211 11
Q ss_pred C-CCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCCc
Q 044468 193 S-SRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHATW 271 (396)
Q Consensus 193 l-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~ 271 (396)
+ .++++|+.|+++++.-.... ....+++|+.|+++.|.+..+.... ..+++|+.|++++|.++.++.
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~---------~~l~~L~~L~Ls~N~l~~lp~ 231 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDVK---GQVVFAKLKTLDLSSNKLAFMGPEF---------QSAAGVTWISLRNNKLVLIEK 231 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEEE---CCCCCTTCCEEECCSSCCCEECGGG---------GGGTTCSEEECTTSCCCEECT
T ss_pred HhhhCCcccEEecCCCcccccc---ccccCCCCCEEECCCCCCCCCCHhH---------cCCCCccEEEecCCcCcccch
Confidence 1 12344666666654322211 1334667777777766666543321 156777777777776666543
Q ss_pred -cCCCCCccEEeecccc
Q 044468 272 -LVLAPRAKVIRISNCQ 287 (396)
Q Consensus 272 -l~~l~~L~~L~l~~~~ 287 (396)
++.+++|+.|++++++
T Consensus 232 ~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 232 ALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp TCCCCTTCCEEECTTCC
T ss_pred hhccCCCCCEEEcCCCC
Confidence 5556777777777765
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=4.7e-21 Score=183.65 Aligned_cols=259 Identities=17% Similarity=0.105 Sum_probs=165.7
Q ss_pred CccccEEEcccccccc--ccCC-CCCCCCcEEEccCCccCc-----cChHHHhcCccccEEEeecCCCCcc-ccccc-cC
Q 044468 13 WKEITRMSLMQNAIQN--LTET-PTCPHLRALFLHSNHLGT-----VSNNFFHSMASLRVLIFLYNRSLEN-LPLGI-LN 82 (396)
Q Consensus 13 ~~~L~~L~l~~~~~~~--l~~~-~~~~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~-l~~~l-~~ 82 (396)
.+++++|+++++.+.. .... ..+++|+.|++++|.+.. ++.. +..+++|++|++++| .++. .+..+ ..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSN-ELGDVGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTC-CCHHHHHHHHHHT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCC-cCChHHHHHHHHH
Confidence 3578999999999876 3332 678999999999998863 3444 788999999999999 6653 22222 23
Q ss_pred CC----cCCEEEccCCCCC-----ccchhhhcCCcccEEecccccCCCCCCc----chhcCCCcccEEEeeccCccchhc
Q 044468 83 LV----SLQHLDLSWTGIT-----TLPIELKYLVNLKCLNLEYTFCLSRIPQ----PVISDLKMLRALRMFECGFKVEQE 149 (396)
Q Consensus 83 l~----~L~~L~l~~~~l~-----~l~~~l~~l~~L~~L~l~~~~~~~~~~~----~~i~~l~~L~~L~l~~~~~~~~~~ 149 (396)
+. +|++|++++|.++ .++..+.++++|++|++++|......+. ......++|++|++.+|.++..
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-- 157 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA-- 157 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG--
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH--
Confidence 44 7999999999988 4577789999999999999854332222 2122356899999999988763
Q ss_pred cchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCC-CCcccceEEecccCCCcccc----hhhhhccccc
Q 044468 150 ADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSS-RSINTQSLCLRHLNNSNLLS----AFSFASLRHL 224 (396)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~----~~~l~~~~~L 224 (396)
........+..+++|+.|+++++.........-...+. ..++|+.|+++++.- .... ...+..+++|
T Consensus 158 -------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L 229 (461)
T 1z7x_W 158 -------SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV-TSDNCRDLCGIVASKASL 229 (461)
T ss_dssp -------GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC-BTTHHHHHHHHHHHCTTC
T ss_pred -------HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC-cHHHHHHHHHHHHhCCCc
Confidence 11123556777899999999888764322111111111 233588888887643 3221 1235567888
Q ss_pred cceeeeccccceeeeccccccccccccccccCcEeEEeCceeec-----CC-ccCCCCCccEEeeccc
Q 044468 225 WTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRH-----AT-WLVLAPRAKVIRISNC 286 (396)
Q Consensus 225 ~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----l~-~l~~l~~L~~L~l~~~ 286 (396)
++|+++.+.+.+.+......++. ..+++|++|++++|.+++ ++ .+..+++|++|+++++
T Consensus 230 ~~L~Ls~n~l~~~~~~~l~~~~~---~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 230 RELALGSNKLGDVGMAELCPGLL---HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHT---STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred cEEeccCCcCChHHHHHHHHHHh---cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 88888866665533211110000 035666666666665544 11 1333556666666554
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=6.3e-18 Score=150.62 Aligned_cols=132 Identities=24% Similarity=0.299 Sum_probs=93.3
Q ss_pred ccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEE
Q 044468 14 KEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLD 90 (396)
Q Consensus 14 ~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~ 90 (396)
+++++|++++|.+..++. . ..+++|++|++++|.+..++...+..+++|++|++++| .++.++ ..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence 467788888887777554 2 67778888888888777666655777788888888887 555444 5567778888888
Q ss_pred ccCCCCCccch-hhhcCCcccEEecccccCCC-CCCcchhcCCCcccEEEeeccCccch
Q 044468 91 LSWTGITTLPI-ELKYLVNLKCLNLEYTFCLS-RIPQPVISDLKMLRALRMFECGFKVE 147 (396)
Q Consensus 91 l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~-~~~~~~i~~l~~L~~L~l~~~~~~~~ 147 (396)
+++|.+..++. .+.++++|++|++++|.... .+|.. ++.+++|++|++++|.+...
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcC
Confidence 88777776554 46777788888887774433 24554 77777888888887776653
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=4.3e-18 Score=151.74 Aligned_cols=217 Identities=17% Similarity=0.115 Sum_probs=154.6
Q ss_pred EEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCCCC
Q 044468 18 RMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWTGI 96 (396)
Q Consensus 18 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~l 96 (396)
.++..+..+..+|.. -.++|+.|++++|.+..++...+..+++|++|++++| .+..++ ..+.++++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCcc
Confidence 455556666667653 2257999999999998887655889999999999999 666665 4688899999999999999
Q ss_pred Cccc-hhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEE
Q 044468 97 TTLP-IELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLT 175 (396)
Q Consensus 97 ~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 175 (396)
+.++ ..+.++++|++|++.+|... .++...++.+++|++|++.+|.+... .....+.++++|+.|+
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~------------~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSF------------KLPEYFSNLTNLEHLD 155 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCC------------CCCGGGGGCTTCCEEE
T ss_pred CccChhhhcCCccccEEECCCCCcc-ccCchhcccCCCCCEEECcCCcccee------------cCchhhccCCCCCEEE
Confidence 8665 45888999999999998544 44442388899999999999987753 2345666777777777
Q ss_pred EEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhcccccc----ceeeeccccceeeecccccccccccc
Q 044468 176 VTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLW----TLHLYFNDFEELNIDAGEVKRIRETR 251 (396)
Q Consensus 176 l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~i~~l~~~~~~~~~~~~~~ 251 (396)
++.+...... ...+..+++|+ +|+++.+.+..+.....
T Consensus 156 Ls~N~l~~~~-----------------------------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~--------- 197 (276)
T 2z62_A 156 LSSNKIQSIY-----------------------------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--------- 197 (276)
T ss_dssp CCSSCCCEEC-----------------------------GGGGHHHHTCTTCCEEEECCSSCCCEECTTSS---------
T ss_pred CCCCCCCcCC-----------------------------HHHhhhhhhccccceeeecCCCcccccCcccc---------
Confidence 6655432211 11233334444 56677777765543322
Q ss_pred ccccCcEeEEeCceeecCCc--cCCCCCccEEeecccc
Q 044468 252 GFHSLQKVYINYSKFRHATW--LVLAPRAKVIRISNCQ 287 (396)
Q Consensus 252 ~~~~L~~L~l~~~~l~~l~~--l~~l~~L~~L~l~~~~ 287 (396)
...+|++|++++|.++.++. +..+++|++|++++++
T Consensus 198 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 198 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 34578888888887777654 5678888888888765
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=2.2e-19 Score=177.51 Aligned_cols=298 Identities=12% Similarity=0.080 Sum_probs=179.9
Q ss_pred cccEEEccccc-ccc--ccCC-CCCCCCcEEEccCCccCcc----ChHHHhcCccccEEEeecCCCCc-----ccccccc
Q 044468 15 EITRMSLMQNA-IQN--LTET-PTCPHLRALFLHSNHLGTV----SNNFFHSMASLRVLIFLYNRSLE-----NLPLGIL 81 (396)
Q Consensus 15 ~L~~L~l~~~~-~~~--l~~~-~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-----~l~~~l~ 81 (396)
+|++|+++++. +.. ++.. ..+++|+.|++++|.+.+. -..+...+++|++|+++++ .++ .++..+.
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIAR 217 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHh
Confidence 49999999886 322 4444 5899999999999977432 1223678999999999999 443 3444566
Q ss_pred CCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCC---CCCCcchhcCCCcccEEEeeccCccchhccchhccCCc
Q 044468 82 NLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCL---SRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDS 158 (396)
Q Consensus 82 ~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~---~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 158 (396)
++++|++|++++|.+..++..+.++++|++|++++.... ...+.. +..+++|+.+++..+...
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~------------- 283 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-LVFPRKLCRLGLSYMGPN------------- 283 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC-CCCCTTCCEEEETTCCTT-------------
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH-hhccccccccCccccchh-------------
Confidence 889999999999998889988999999999999864222 122333 778899999999875332
Q ss_pred hhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEec------------------------c--------
Q 044468 159 EVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLR------------------------H-------- 206 (396)
Q Consensus 159 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~------------------------~-------- 206 (396)
.....+..+++|+.|++..+......-. ..+.++++|+.|++. +
T Consensus 284 -~l~~~~~~~~~L~~L~Ls~~~l~~~~~~---~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~ 359 (592)
T 3ogk_B 284 -EMPILFPFAAQIRKLDLLYALLETEDHC---TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGME 359 (592)
T ss_dssp -TGGGGGGGGGGCCEEEETTCCCCHHHHH---HHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTS
T ss_pred -HHHHHHhhcCCCcEEecCCCcCCHHHHH---HHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccc
Confidence 2445566788999999987764322111 112334445555554 2
Q ss_pred --cCCCcccchhh-hhccccccceeeeccccceeeeccccccccccccccccCcEeEEeC---c-eeecCCc-------c
Q 044468 207 --LNNSNLLSAFS-FASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINY---S-KFRHATW-------L 272 (396)
Q Consensus 207 --~~~~~~~~~~~-l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~---~-~l~~l~~-------l 272 (396)
+...+...... ...+++|++|+++++.+.+......+. .+++|++|++.+ | .+++.+. +
T Consensus 360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~-------~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~ 432 (592)
T 3ogk_B 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT-------YLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432 (592)
T ss_dssp STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH-------HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh-------hCCCCcEEEEeecCCCccccCchHHHHHHHHH
Confidence 22222222111 123444444444444443322211110 355666666652 2 4443211 2
Q ss_pred CCCCCccEEeeccccc-cceeecccccccchhccccccccccCcceeeccCCccccc--ccCCCCCCCCcceEEeccCcc
Q 044468 273 VLAPRAKVIRISNCQR-LQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKS--IHSSYLPFPRLKEICVWKCAE 349 (396)
Q Consensus 273 ~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~i~~c~~ 349 (396)
.++++|++|+++.|.. +.... .......+++|++|++++|. +.. ++.....+++|+.|++.+|+
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~-----------~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~- 499 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLG-----------LSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC- 499 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHH-----------HHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-
T ss_pred HhCCCCCEEEEecCCCCccHHH-----------HHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-
Confidence 3366666666654432 11110 00122347788888888774 432 22223457899999999987
Q ss_pred cc
Q 044468 350 LK 351 (396)
Q Consensus 350 L~ 351 (396)
++
T Consensus 500 l~ 501 (592)
T 3ogk_B 500 FS 501 (592)
T ss_dssp CB
T ss_pred Cc
Confidence 44
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=2.1e-18 Score=153.33 Aligned_cols=158 Identities=23% Similarity=0.260 Sum_probs=97.3
Q ss_pred CccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcC
Q 044468 8 PRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSL 86 (396)
Q Consensus 8 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L 86 (396)
.....+++|++|++.++.+..++....+++|++|++++|.+..++ . +..+++|++|++++| .++.++. .++++++|
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-A-LKELTNLTYLILTGN-QLQSLPNGVFDKLTNL 111 (272)
T ss_dssp ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-G-GTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred cccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-h-hcCCCCCCEEECCCC-ccCccChhHhcCCcCC
Confidence 334456667777777776666655566777777777777666554 2 667777777777777 5554443 35667777
Q ss_pred CEEEccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhh
Q 044468 87 QHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEEL 165 (396)
Q Consensus 87 ~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (396)
++|++++|.++.++.. +.++++|++|++++|. ...++...++.+++|++|++.+|.+... ....+
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~ 177 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSL-------------PEGVF 177 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTT
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCcc-------------CHHHh
Confidence 7777777766655544 5667777777777763 3344444356677777777777766542 22334
Q ss_pred hcCCCCcEEEEEecccc
Q 044468 166 LALKHLNLLTVTLQIFG 182 (396)
Q Consensus 166 ~~l~~L~~L~l~~~~~~ 182 (396)
..+++|+.|++..+...
T Consensus 178 ~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp TTCTTCCEEECCSSCCS
T ss_pred cCCccCCEEECCCCcCC
Confidence 55556666665555443
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=1.6e-18 Score=157.01 Aligned_cols=198 Identities=20% Similarity=0.230 Sum_probs=135.0
Q ss_pred ccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCE
Q 044468 9 RIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQH 88 (396)
Q Consensus 9 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~ 88 (396)
.+..+++|++|+++++.+..++....+++|+.|++++|.+..++. +..+++|++|++++| .++.++ .+..+++|++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCE
T ss_pred cHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCE
Confidence 345567777888887777777655677788888888777776665 677778888888877 566654 4677777888
Q ss_pred EEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcC
Q 044468 89 LDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLAL 168 (396)
Q Consensus 89 L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 168 (396)
|++++|.++.++. +..+++|++|++++|. ...++. ++.+++|++|++.+|.+... ..+..+
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~---------------~~l~~l 172 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVSDL---------------TPLANL 172 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCCC---------------GGGTTC
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCCCC---------------hhhcCC
Confidence 8888777777654 6777778888887773 344443 66777788888877776653 126677
Q ss_pred CCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceee
Q 044468 169 KHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELN 238 (396)
Q Consensus 169 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~ 238 (396)
++|+.|++..+.....+. +.++++|+.|+++++.-.... .+..+++|+.|+++.+.+....
T Consensus 173 ~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 173 SKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp TTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEEECCC
T ss_pred CCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCeeecCC
Confidence 777777777776655443 344555777777765432222 2666777777877766665443
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=1.8e-19 Score=163.64 Aligned_cols=128 Identities=20% Similarity=0.186 Sum_probs=73.3
Q ss_pred CCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCc--ccccccc-------CCCcCCEEEccCCCCC-ccchhh
Q 044468 34 TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE--NLPLGIL-------NLVSLQHLDLSWTGIT-TLPIEL 103 (396)
Q Consensus 34 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~l~~~l~-------~l~~L~~L~l~~~~l~-~l~~~l 103 (396)
..++|+.|++++|.+ .+|.. +... |++|+++++ .+. .+|..+. ++++|++|++++|.++ .+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~-~~~~--L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQ-FTDI--IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHH-HHHH--HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc-ccHHH-HHHH--Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 344566666666666 66655 2222 666666666 432 2343333 5667777777777665 455544
Q ss_pred --hcCCcccEEecccccCCCCCCcchhcCC-----CcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEE
Q 044468 104 --KYLVNLKCLNLEYTFCLSRIPQPVISDL-----KMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTV 176 (396)
Q Consensus 104 --~~l~~L~~L~l~~~~~~~~~~~~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 176 (396)
..+++|++|++++|..... |.. ++.+ ++|++|++++|.+... ....+.++++|+.|++
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~-~~~l~~~~~~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAW-LAELQQWLKPGLKVLSIAQAHSLNF-------------SCEQVRVFPALSTLDL 180 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSH-HHHHHTTCCTTCCEEEEESCSCCCC-------------CTTTCCCCSSCCEEEC
T ss_pred HHhcCCCccEEEccCCCCcch-hHH-HHHHHHhhcCCCcEEEeeCCCCccc-------------hHHHhccCCCCCEEEC
Confidence 6666777777776643333 433 4444 6667777766666542 3345556666666666
Q ss_pred Eeccc
Q 044468 177 TLQIF 181 (396)
Q Consensus 177 ~~~~~ 181 (396)
+.+..
T Consensus 181 s~N~l 185 (312)
T 1wwl_A 181 SDNPE 185 (312)
T ss_dssp CSCTT
T ss_pred CCCCc
Confidence 65553
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=9.7e-18 Score=150.36 Aligned_cols=204 Identities=21% Similarity=0.165 Sum_probs=154.5
Q ss_pred ccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCE
Q 044468 9 RIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQH 88 (396)
Q Consensus 9 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~ 88 (396)
.++++++++++++++++++.+|... .++++.|++++|.+..++...+..+++|++|++++| .++.++.. +.+++|++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCE
T ss_pred cccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCE
Confidence 3667889999999999999887652 368999999999998776666899999999999999 77777654 78999999
Q ss_pred EEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcC
Q 044468 89 LDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLAL 168 (396)
Q Consensus 89 L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 168 (396)
|++++|.++.+|..+..+++|++|++++| .+..++...+..+++|++|++.+|.+... ....+..+
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l 147 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTL-------------PPGLLTPT 147 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCC-------------CTTTTTTC
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCcc-------------Chhhcccc
Confidence 99999999999988899999999999998 45566655589999999999999988763 33445566
Q ss_pred CCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccc
Q 044468 169 KHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIR 248 (396)
Q Consensus 169 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~ 248 (396)
++|+.|+++.+....+ ....+..+++|+.|+++.|.++.+.....
T Consensus 148 ~~L~~L~L~~N~l~~l-----------------------------~~~~~~~l~~L~~L~L~~N~l~~ip~~~~------ 192 (290)
T 1p9a_G 148 PKLEKLSLANNNLTEL-----------------------------PAGLLNGLENLDTLLLQENSLYTIPKGFF------ 192 (290)
T ss_dssp TTCCEEECTTSCCSCC-----------------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTT------
T ss_pred cCCCEEECCCCcCCcc-----------------------------CHHHhcCcCCCCEEECCCCcCCccChhhc------
Confidence 6666666555443221 11224556677777777776664433222
Q ss_pred cccccccCcEeEEeCceee
Q 044468 249 ETRGFHSLQKVYINYSKFR 267 (396)
Q Consensus 249 ~~~~~~~L~~L~l~~~~l~ 267 (396)
..++|+.+++.+|.+.
T Consensus 193 ---~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 193 ---GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ---TTCCCSEEECCSCCBC
T ss_pred ---ccccCCeEEeCCCCcc
Confidence 4567888888877444
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=1.7e-17 Score=147.39 Aligned_cols=200 Identities=23% Similarity=0.277 Sum_probs=135.8
Q ss_pred cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccc-ccCCCcCCEEEccC
Q 044468 15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG-ILNLVSLQHLDLSW 93 (396)
Q Consensus 15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-l~~l~~L~~L~l~~ 93 (396)
+.++++++++.++.+|.. -.++++.|++++|.+..++...+..+++|++|++++| .++.++.. +.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 467888888888887764 2257888899888888777655888888999999888 67766644 46788889999988
Q ss_pred CCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCc
Q 044468 94 TGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLN 172 (396)
Q Consensus 94 ~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 172 (396)
|.++.+|.. +..+++|++|++++|. ...++...++.+++|++|++++|.+... ....+..+++|+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------------~~~~~~~l~~L~ 160 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSL-------------PKGVFDKLTSLK 160 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCcc-------------CHhHccCCcccc
Confidence 888877654 5778888888888874 4445544477888888888888877653 233355566666
Q ss_pred EEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccccccc
Q 044468 173 LLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRG 252 (396)
Q Consensus 173 ~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~ 252 (396)
.|++..+....++ ...+..+++|++|+++.+.++.+...... .
T Consensus 161 ~L~L~~n~l~~~~-----------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--------~ 203 (270)
T 2o6q_A 161 ELRLYNNQLKRVP-----------------------------EGAFDKLTELKTLKLDNNQLKRVPEGAFD--------S 203 (270)
T ss_dssp EEECCSSCCSCCC-----------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTT--------T
T ss_pred eeEecCCcCcEeC-----------------------------hhHhccCCCcCEEECCCCcCCcCCHHHhc--------c
Confidence 6665554432221 11244556666666665555543322111 4
Q ss_pred cccCcEeEEeCceee
Q 044468 253 FHSLQKVYINYSKFR 267 (396)
Q Consensus 253 ~~~L~~L~l~~~~l~ 267 (396)
+++|+.|++.+|.+.
T Consensus 204 l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 204 LEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTCCEEECCSSCBC
T ss_pred ccCCCEEEecCCCee
Confidence 667777777776433
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=2.9e-19 Score=176.68 Aligned_cols=301 Identities=15% Similarity=0.090 Sum_probs=161.1
Q ss_pred CCccccEEEcccc-cccc--ccCC-CCCCCCcEEEccCCccCccCh----HHHhcCccccEEEeecCC-CCc--cccccc
Q 044468 12 MWKEITRMSLMQN-AIQN--LTET-PTCPHLRALFLHSNHLGTVSN----NFFHSMASLRVLIFLYNR-SLE--NLPLGI 80 (396)
Q Consensus 12 ~~~~L~~L~l~~~-~~~~--l~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~-~~~--~l~~~l 80 (396)
.+++|++|++.+| .+.. ++.. ..+++|+.|++++|.+..... .+...+++|++|+++++. .+. .++..+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 4678888888877 4444 4444 567888888888876543221 113356688888888773 111 122223
Q ss_pred cCCCcCCEEEccCC-CCCccchhhhcCCcccEEecccccC------------------------------CCCCCcchhc
Q 044468 81 LNLVSLQHLDLSWT-GITTLPIELKYLVNLKCLNLEYTFC------------------------------LSRIPQPVIS 129 (396)
Q Consensus 81 ~~l~~L~~L~l~~~-~l~~l~~~l~~l~~L~~L~l~~~~~------------------------------~~~~~~~~i~ 129 (396)
.++++|++|++++| .+..++..+.++++|++|+++.+.. ...++. ++.
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~-~~~ 286 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA-VYS 286 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG-GHH
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH-HHH
Confidence 34677888888777 4445666666677777776544310 001111 123
Q ss_pred CCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecc---
Q 044468 130 DLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRH--- 206 (396)
Q Consensus 130 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~--- 206 (396)
.+++|++|++.+|.+... .....+..+++|+.|.+.++.. ...+.. ....+++|+.|++.+
T Consensus 287 ~~~~L~~L~L~~~~l~~~------------~l~~~~~~~~~L~~L~l~~~~~--~~~l~~--l~~~~~~L~~L~L~~~~~ 350 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSY------------DLVKLLCQCPKLQRLWVLDYIE--DAGLEV--LASTCKDLRELRVFPSEP 350 (594)
T ss_dssp HHTTCCEEECTTCCCCHH------------HHHHHHTTCTTCCEEEEEGGGH--HHHHHH--HHHHCTTCCEEEEECSCT
T ss_pred hhCCCCEEEccCCCCCHH------------HHHHHHhcCCCcCEEeCcCccC--HHHHHH--HHHhCCCCCEEEEecCcc
Confidence 567788888877775432 2333355677888888776521 111110 011245577777733
Q ss_pred -----cCCCcccchhhhh-ccccccceeeeccccceeeeccccccccccccccccCcEeEEe-----Cc-eeecCCc---
Q 044468 207 -----LNNSNLLSAFSFA-SLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYIN-----YS-KFRHATW--- 271 (396)
Q Consensus 207 -----~~~~~~~~~~~l~-~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~-----~~-~l~~l~~--- 271 (396)
+...+......+. .+++|++|.+.++.+.+........ .+++|++|++. +| .+++.+.
T Consensus 351 ~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~-------~~~~L~~L~L~~~~~~~~~~l~~~~~~~~ 423 (594)
T 2p1m_B 351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR-------NRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423 (594)
T ss_dssp TCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHH-------HCTTCCEEEEEESSTTCCCTTTCCCTHHH
T ss_pred cccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHh-------hCCCcceeEeecccCCCcccccCCchhhH
Confidence 2333333333333 3677777766666655433221111 35566666665 23 3332111
Q ss_pred ----cCC------------------------CCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCC
Q 044468 272 ----LVL------------------------APRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGL 323 (396)
Q Consensus 272 ----l~~------------------------l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 323 (396)
+.. +++|++|++++|. +++. +.......+++|+.|++++|
T Consensus 424 ~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~-----------~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 424 FGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDL-----------GMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-SSHH-----------HHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCC-CcHH-----------HHHHHHhcCCCcCEEECcCC
Confidence 222 4445555554443 1111 11111245788888888888
Q ss_pred ccccccc--CCCCCCCCcceEEeccCcc
Q 044468 324 QNLKSIH--SSYLPFPRLKEICVWKCAE 349 (396)
Q Consensus 324 ~~l~~~~--~~~~~~~~L~~L~i~~c~~ 349 (396)
+. .... .....+++|+.|++++|+.
T Consensus 492 ~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 492 PF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp SC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 64 3221 1234578899999988864
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=4.6e-18 Score=148.21 Aligned_cols=208 Identities=19% Similarity=0.187 Sum_probs=123.3
Q ss_pred ccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEEccC-CCCCccc
Q 044468 23 QNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLDLSW-TGITTLP 100 (396)
Q Consensus 23 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~-~~l~~l~ 100 (396)
...++.+|. -.++|+.|++++|.+..++...+..+++|++|++++|..++.++. .+.++++|++|++++ |.++.++
T Consensus 20 c~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 20 CKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp ECSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 333555555 334777778877777777665577777788888877732665553 566777777777777 6777665
Q ss_pred h-hhhcCCcccEEecccccCCCCCCcchhcCCCccc---EEEeecc-CccchhccchhccCCchhhhHhhhcCCCCc-EE
Q 044468 101 I-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLR---ALRMFEC-GFKVEQEADRILFGDSEVLVEELLALKHLN-LL 174 (396)
Q Consensus 101 ~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L 174 (396)
. .+.++++|++|++++|. ...+|. ++.+++|+ +|++.+| .+... ....+.++++|+ .+
T Consensus 98 ~~~f~~l~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i-------------~~~~~~~l~~L~~~L 161 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTG-LKMFPD--LTKVYSTDIFFILEITDNPYMTSI-------------PVNAFQGLCNETLTL 161 (239)
T ss_dssp TTSEECCTTCCEEEEEEEC-CCSCCC--CTTCCBCCSEEEEEEESCTTCCEE-------------CTTTTTTTBSSEEEE
T ss_pred HHHhCCCCCCCEEeCCCCC-Cccccc--cccccccccccEEECCCCcchhhc-------------CcccccchhcceeEE
Confidence 4 46677777777777763 334554 56666666 7777777 55542 223345555555 55
Q ss_pred EEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecc-ccceeeecccccccccccccc
Q 044468 175 TVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFN-DFEELNIDAGEVKRIRETRGF 253 (396)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~l~~~~~~~~~~~~~~~~ 253 (396)
+++.+....++. ..+.. ++|++|+++.+ .++.+...... .+
T Consensus 162 ~l~~n~l~~i~~-----------------------------~~~~~-~~L~~L~L~~n~~l~~i~~~~~~--------~l 203 (239)
T 2xwt_C 162 KLYNNGFTSVQG-----------------------------YAFNG-TKLDAVYLNKNKYLTVIDKDAFG--------GV 203 (239)
T ss_dssp ECCSCCCCEECT-----------------------------TTTTT-CEEEEEECTTCTTCCEECTTTTT--------TC
T ss_pred EcCCCCCcccCH-----------------------------hhcCC-CCCCEEEcCCCCCcccCCHHHhh--------cc
Confidence 555444322211 11222 45555666544 25544332221 45
Q ss_pred -ccCcEeEEeCceeecCCccCCCCCccEEeecccc
Q 044468 254 -HSLQKVYINYSKFRHATWLVLAPRAKVIRISNCQ 287 (396)
Q Consensus 254 -~~L~~L~l~~~~l~~l~~l~~l~~L~~L~l~~~~ 287 (396)
++|++|++++|.++.++.. .+++|+.|+++++.
T Consensus 204 ~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 204 YSGPSLLDVSQTSVTALPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp SBCCSEEECTTCCCCCCCCT-TCTTCSEEECTTC-
T ss_pred ccCCcEEECCCCccccCChh-HhccCceeeccCcc
Confidence 6677777777766665543 56777777776654
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=5e-18 Score=163.38 Aligned_cols=233 Identities=15% Similarity=0.094 Sum_probs=182.6
Q ss_pred CCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEE
Q 044468 12 MWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHL 89 (396)
Q Consensus 12 ~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L 89 (396)
.+++|++|++++|.+..++. . ..+++|++|++++|.+...++ +..+++|++|++++| .++.+|. .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEE
Confidence 45589999999999999653 4 899999999999999976655 889999999999999 7766653 3899999
Q ss_pred EccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhh-cC
Q 044468 90 DLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELL-AL 168 (396)
Q Consensus 90 ~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l 168 (396)
++++|.++.++. ..+++|++|++++|.+....|.. ++.+++|++|++++|.+.+. .+..+. .+
T Consensus 105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~-------------~~~~l~~~l 168 (487)
T 3oja_A 105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTV-------------NFAELAASS 168 (487)
T ss_dssp ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEE-------------EGGGGGGGT
T ss_pred ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCc-------------ChHHHhhhC
Confidence 999999997765 35789999999999655544544 88999999999999998874 444554 78
Q ss_pred CCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeeccccccccc
Q 044468 169 KHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIR 248 (396)
Q Consensus 169 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~ 248 (396)
+.|+.|+++.+.+...+. ...+++|+.|+++++.- ..... .+..+++|+.|+++.|.+..+....
T Consensus 169 ~~L~~L~Ls~N~l~~~~~------~~~l~~L~~L~Ls~N~l-~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l------- 233 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVKG------QVVFAKLKTLDLSSNKL-AFMGP-EFQSAAGVTWISLRNNKLVLIEKAL------- 233 (487)
T ss_dssp TTCCEEECTTSCCCEEEC------CCCCTTCCEEECCSSCC-CEECG-GGGGGTTCSEEECTTSCCCEECTTC-------
T ss_pred CcccEEecCCCccccccc------cccCCCCCEEECCCCCC-CCCCH-hHcCCCCccEEEecCCcCcccchhh-------
Confidence 999999999998766532 33567799999998643 33322 3778899999999999888654322
Q ss_pred cccccccCcEeEEeCceee--cC-CccCCCCCccEEeec
Q 044468 249 ETRGFHSLQKVYINYSKFR--HA-TWLVLAPRAKVIRIS 284 (396)
Q Consensus 249 ~~~~~~~L~~L~l~~~~l~--~l-~~l~~l~~L~~L~l~ 284 (396)
+.+++|+.|++.+|.+. .+ .++..++.|+.+++.
T Consensus 234 --~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 234 --RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp --CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred --ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 26799999999999666 23 235567777777664
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=5.3e-17 Score=144.15 Aligned_cols=185 Identities=24% Similarity=0.344 Sum_probs=146.3
Q ss_pred CCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-cc
Q 044468 3 GLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LG 79 (396)
Q Consensus 3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~ 79 (396)
+++.+|. .-.+++++|++++|.+..++.. ..+++|++|++++|.+..++...+..+++|++|++++| .+..+| ..
T Consensus 27 ~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~ 104 (270)
T 2o6q_A 27 KLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGV 104 (270)
T ss_dssp CCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhH
Confidence 4556653 1235799999999999997753 88999999999999999998886789999999999999 777666 45
Q ss_pred ccCCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCc
Q 044468 80 ILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDS 158 (396)
Q Consensus 80 l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 158 (396)
+.++++|++|++++|.++.++.. +..+++|++|++++| .+..++...+..+++|++|++.+|.+...
T Consensus 105 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----------- 172 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRV----------- 172 (270)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC-----------
T ss_pred cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEe-----------
Confidence 68899999999999999977654 789999999999998 55566766588999999999999988764
Q ss_pred hhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEeccc
Q 044468 159 EVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHL 207 (396)
Q Consensus 159 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 207 (396)
....+.++++|+.|++..+....++. ..+..+++|+.|++.++
T Consensus 173 --~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 173 --PEGAFDKLTELKTLKLDNNQLKRVPE----GAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp --CTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSS
T ss_pred --ChhHhccCCCcCEEECCCCcCCcCCH----HHhccccCCCEEEecCC
Confidence 34457778888988888776654332 12344555666666553
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=3.9e-18 Score=156.43 Aligned_cols=126 Identities=20% Similarity=0.155 Sum_probs=88.8
Q ss_pred CCcEEEccCCccCccChHHHhcC--ccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCc--cchhhhcCCcccEE
Q 044468 37 HLRALFLHSNHLGTVSNNFFHSM--ASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITT--LPIELKYLVNLKCL 112 (396)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~--l~~~l~~l~~L~~L 112 (396)
.++.++++++.+. +..+..+ +++++|+++++ .+...+..+..+++|++|++++|.++. ++..+.++++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4778888887665 2335666 78888888888 555555556678888888888887762 67778888888888
Q ss_pred ecccccCCCCCCcchhcCCCcccEEEeecc-CccchhccchhccCCchhhhHhhhcCCCCcEEEEEec
Q 044468 113 NLEYTFCLSRIPQPVISDLKMLRALRMFEC-GFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQ 179 (396)
Q Consensus 113 ~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 179 (396)
++++|......+.. ++.+++|++|++.+| .++.. .....+.++++|+.|++.++
T Consensus 124 ~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~------------~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 124 SLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEF------------ALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp ECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHH------------HHHHHHHHCTTCCEEECCCC
T ss_pred eCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHH------------HHHHHHhcCCCCCEEcCCCC
Confidence 88888544445554 777888888888888 45431 23444666777777766655
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=5e-17 Score=149.89 Aligned_cols=238 Identities=13% Similarity=0.074 Sum_probs=174.6
Q ss_pred cEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCE-EEccCC
Q 044468 17 TRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQH-LDLSWT 94 (396)
Q Consensus 17 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~-L~l~~~ 94 (396)
++++.++++++.+|..- .++++.|++++|.+..++.++|..+++|++|++++|...+.+|. .+.++++|++ +.+.++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 67788888888887641 35789999999999988887688999999999999944455653 5678888776 455667
Q ss_pred CCCccc-hhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeecc-CccchhccchhccCCchhhhHhhhcC-CCC
Q 044468 95 GITTLP-IELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFEC-GFKVEQEADRILFGDSEVLVEELLAL-KHL 171 (396)
Q Consensus 95 ~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L 171 (396)
.++.++ ..+.++++|++|++++|. +..++...+....++..+++.++ .+... ....+..+ ..+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l-------------~~~~f~~~~~~l 156 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTI-------------ERNSFVGLSFES 156 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEE-------------CTTSSTTSBSSC
T ss_pred cccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccc-------------cccchhhcchhh
Confidence 888775 457889999999999884 44555433555667778887654 33332 22334444 357
Q ss_pred cEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccceeeecccccccccccc
Q 044468 172 NLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETR 251 (396)
Q Consensus 172 ~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~ 251 (396)
+.|++..+.+..++. ......+|+.+.+.++..........+..+++|+.|+++.|.++.+. ..
T Consensus 157 ~~L~L~~N~i~~i~~-----~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp----------~~- 220 (350)
T 4ay9_X 157 VILWLNKNGIQEIHN-----SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP----------SY- 220 (350)
T ss_dssp EEEECCSSCCCEECT-----TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC----------SS-
T ss_pred hhhccccccccCCCh-----hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC----------hh-
Confidence 788888887765542 22234568889988766666666556788999999999988887543 22
Q ss_pred ccccCcEeEEeCc-eeecCCccCCCCCccEEeecc
Q 044468 252 GFHSLQKVYINYS-KFRHATWLVLAPRAKVIRISN 285 (396)
Q Consensus 252 ~~~~L~~L~l~~~-~l~~l~~l~~l~~L~~L~l~~ 285 (396)
.+.+|++|.+.++ .++.+|.+..+++|+.+++.+
T Consensus 221 ~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 6889999998888 899999999999999999875
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=1e-16 Score=147.87 Aligned_cols=104 Identities=15% Similarity=0.241 Sum_probs=69.9
Q ss_pred cEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEEccCCCCC-ccchh-hhcCCcccEEecc
Q 044468 39 RALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLDLSWTGIT-TLPIE-LKYLVNLKCLNLE 115 (396)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~~~l~-~l~~~-l~~l~~L~~L~l~ 115 (396)
++++++++.+.++|.+ + .+++++|++++| .++.+|. .+.++++|++|++++|.+. .+|.. +.++++++++...
T Consensus 12 ~~v~C~~~~Lt~iP~~-l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSD-L--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTT-C--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcC-c--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 5677777777777765 3 357788888888 7777764 4677888888888888764 45543 5667776654443
Q ss_pred cccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468 116 YTFCLSRIPQPVISDLKMLRALRMFECGFKV 146 (396)
Q Consensus 116 ~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~ 146 (396)
+++.+..++...+..+++|++|++.+|.+..
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred cCCcccccCchhhhhcccccccccccccccc
Confidence 3335555555447777788888877776654
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=9.3e-17 Score=142.71 Aligned_cols=164 Identities=23% Similarity=0.375 Sum_probs=138.2
Q ss_pred CCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-ccc
Q 044468 3 GLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GIL 81 (396)
Q Consensus 3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~ 81 (396)
++..++.+..+++|++|++++|.+..++....+++|++|++++|.+..++...+..+++|++|++++| .+..++. .++
T Consensus 52 ~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 130 (272)
T 3rfs_A 52 DIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFD 130 (272)
T ss_dssp CCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTT
T ss_pred CcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhc
Confidence 45667788899999999999999998875589999999999999998888776899999999999999 6766654 478
Q ss_pred CCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchh
Q 044468 82 NLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEV 160 (396)
Q Consensus 82 ~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 160 (396)
++++|++|++++|.++.++.. +.++++|++|++++|. ...++...++.+++|++|++.+|.+.+.
T Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------- 196 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSV------------- 196 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC-------------
T ss_pred cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCcc-------------
Confidence 999999999999999987765 6889999999999985 4456655578999999999999998874
Q ss_pred hhHhhhcCCCCcEEEEEeccc
Q 044468 161 LVEELLALKHLNLLTVTLQIF 181 (396)
Q Consensus 161 ~~~~l~~l~~L~~L~l~~~~~ 181 (396)
....+..+++|+.|++.++..
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCB
T ss_pred CHHHHhCCcCCCEEEccCCCc
Confidence 344567778888888776654
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=6.5e-18 Score=154.96 Aligned_cols=219 Identities=16% Similarity=0.051 Sum_probs=140.2
Q ss_pred ccEEEccccccccccCC-CCC--CCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCc-c-ccccccCCCcCCEEE
Q 044468 16 ITRMSLMQNAIQNLTET-PTC--PHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE-N-LPLGILNLVSLQHLD 90 (396)
Q Consensus 16 L~~L~l~~~~~~~l~~~-~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~-l~~~l~~l~~L~~L~ 90 (396)
+++++++++.+.. .. ..+ ++++.|++.++.+...+.. +..+++|++|++++| .+. . ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~~--~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLHP--DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCCH--HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCCH--HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEe
Confidence 6677777776553 11 233 6778888888777655444 556788888888887 444 2 556667778888888
Q ss_pred ccCCCCC-ccchhhhcCCcccEEecccccCCCC--CCcchhcCCCcccEEEeecc-CccchhccchhccCCchhhhHhhh
Q 044468 91 LSWTGIT-TLPIELKYLVNLKCLNLEYTFCLSR--IPQPVISDLKMLRALRMFEC-GFKVEQEADRILFGDSEVLVEELL 166 (396)
Q Consensus 91 l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~~~~--~~~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 166 (396)
+++|.++ ..+..+..+++|++|++++|..... ++.. +..+++|++|++.+| .++.. .....+.
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~------------~~~~~~~ 191 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK------------HVQVAVA 191 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH------------HHHHHHH
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH------------HHHHHHH
Confidence 8888776 5566677788888888887733332 3332 667788888888887 66542 2455567
Q ss_pred cCC-CCcEEEEEeccc----chhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecc-ccceeeec
Q 044468 167 ALK-HLNLLTVTLQIF----GALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFN-DFEELNID 240 (396)
Q Consensus 167 ~l~-~L~~L~l~~~~~----~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~l~~~ 240 (396)
.++ +|+.|++.++.. ..++. .+.++++|+.|+++++...+......+..+++|++|+++.+ .+.+..+.
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 266 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLST-----LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 266 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHH-----HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG
T ss_pred hcccCCCEEEeCCCcccCCHHHHHH-----HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH
Confidence 777 888888777642 12221 12335568888887776555444445677788888888743 33322221
Q ss_pred cccccccccccccccCcEeEEeCc
Q 044468 241 AGEVKRIRETRGFHSLQKVYINYS 264 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~L~~L~l~~~ 264 (396)
.. +.+++|++|++.+|
T Consensus 267 ~l--------~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 267 EL--------GEIPTLKTLQVFGI 282 (336)
T ss_dssp GG--------GGCTTCCEEECTTS
T ss_pred HH--------hcCCCCCEEeccCc
Confidence 11 16788888888887
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=1.3e-16 Score=142.95 Aligned_cols=183 Identities=23% Similarity=0.221 Sum_probs=148.3
Q ss_pred CCCCCCCccCCCccccEEEccccccccccC-C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccc
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTE-T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG 79 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~ 79 (396)
.+++.+|. .-.++++.|++++|.+..++. . ..+++|+.|++++|.+..++. ...+++|++|++++| .++.+|..
T Consensus 20 ~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N-~l~~l~~~ 95 (290)
T 1p9a_G 20 RNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHN-QLQSLPLL 95 (290)
T ss_dssp SCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSS-CCSSCCCC
T ss_pred CCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCC-cCCcCchh
Confidence 35566653 123689999999999998643 3 889999999999999988776 478999999999999 88899988
Q ss_pred ccCCCcCCEEEccCCCCCccch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCc
Q 044468 80 ILNLVSLQHLDLSWTGITTLPI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDS 158 (396)
Q Consensus 80 l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 158 (396)
+..+++|++|++++|.++.+|. .+.++++|++|++++| .+..++..++..+++|+.|++.+|.+...
T Consensus 96 ~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l----------- 163 (290)
T 1p9a_G 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTEL----------- 163 (290)
T ss_dssp TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCC-----------
T ss_pred hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCcc-----------
Confidence 8999999999999999998874 5889999999999998 55567766688999999999999998874
Q ss_pred hhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEeccc
Q 044468 159 EVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHL 207 (396)
Q Consensus 159 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 207 (396)
....+..+++|+.|++..+....++. .+...++|+.+++.++
T Consensus 164 --~~~~~~~l~~L~~L~L~~N~l~~ip~-----~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 164 --PAGLLNGLENLDTLLLQENSLYTIPK-----GFFGSHLLPFAFLHGN 205 (290)
T ss_dssp --CTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCCCSEEECCSC
T ss_pred --CHHHhcCcCCCCEEECCCCcCCccCh-----hhcccccCCeEEeCCC
Confidence 34556788999999998888765542 2333445777777654
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=1.5e-18 Score=162.38 Aligned_cols=239 Identities=14% Similarity=0.070 Sum_probs=122.8
Q ss_pred CCCCCCcEEEccCCccCccChH----HHhcCccccEEEeecCCCCc----cccccc-------cCCCcCCEEEccCCCCC
Q 044468 33 PTCPHLRALFLHSNHLGTVSNN----FFHSMASLRVLIFLYNRSLE----NLPLGI-------LNLVSLQHLDLSWTGIT 97 (396)
Q Consensus 33 ~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~----~l~~~l-------~~l~~L~~L~l~~~~l~ 97 (396)
..+++|+.|++++|.+...... .+..+++|++|++++| .+. .+|..+ ..+++|++|++++|.++
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 5566777777777766432111 1446677777777765 322 223332 46677777777777666
Q ss_pred c-----cchhhhcCCcccEEecccccCCCCCCcc---hhcCC---------CcccEEEeeccCccchhccchhccCCchh
Q 044468 98 T-----LPIELKYLVNLKCLNLEYTFCLSRIPQP---VISDL---------KMLRALRMFECGFKVEQEADRILFGDSEV 160 (396)
Q Consensus 98 ~-----l~~~l~~l~~L~~L~l~~~~~~~~~~~~---~i~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 160 (396)
. +|..+.++++|++|++++|.+....+.. .+..+ ++|++|++++|.+... ....
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~---------~~~~ 178 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG---------SMKE 178 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG---------GHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH---------HHHH
Confidence 4 5556667777777777776432211111 02222 6777777777766531 0112
Q ss_pred hhHhhhcCCCCcEEEEEecccchhhhhhhcc-CCCCCcccceEEecccCCCccc----chhhhhccccccceeeeccccc
Q 044468 161 LVEELLALKHLNLLTVTLQIFGALQRLLNYC-NSSRSINTQSLCLRHLNNSNLL----SAFSFASLRHLWTLHLYFNDFE 235 (396)
Q Consensus 161 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~i~ 235 (396)
....+..+++|+.|++..+............ .+.++++|+.|+++++. .... ....+..+++|++|+++.|.+.
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 2245566667777776666554211101111 34445556666666543 2110 1112445566666666655554
Q ss_pred eeeeccccccccccc---cccccCcEeEEeCceeec-----CCc-c-CCCCCccEEeecccc
Q 044468 236 ELNIDAGEVKRIRET---RGFHSLQKVYINYSKFRH-----ATW-L-VLAPRAKVIRISNCQ 287 (396)
Q Consensus 236 ~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~-----l~~-l-~~l~~L~~L~l~~~~ 287 (396)
+.+... ++.. +.+++|++|++++|.++. ++. + ..+++|++|++++|.
T Consensus 258 ~~~~~~-----l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 258 ARGAAA-----VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHH-----HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred hhhHHH-----HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 432111 1110 025666666666665554 322 2 335666666666554
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=5.6e-17 Score=141.28 Aligned_cols=204 Identities=13% Similarity=0.226 Sum_probs=153.7
Q ss_pred CCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCc-cCccChHHHhcCccccEEEeec-CCCCcccc-c
Q 044468 4 LTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNH-LGTVSNNFFHSMASLRVLIFLY-NRSLENLP-L 78 (396)
Q Consensus 4 l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~l~-~ 78 (396)
++.+|. -.+++++|++++|.++.++.. ..+++|+.|++++|. +..++...+..+++|++|++++ | .++.++ .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHH
Confidence 556666 234899999999999997764 789999999999997 8888876689999999999998 7 777776 4
Q ss_pred cccCCCcCCEEEccCCCCCccchhhhcCCccc---EEecccccCCCCCCcchhcCCCccc-EEEeeccCccchhccchhc
Q 044468 79 GILNLVSLQHLDLSWTGITTLPIELKYLVNLK---CLNLEYTFCLSRIPQPVISDLKMLR-ALRMFECGFKVEQEADRIL 154 (396)
Q Consensus 79 ~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~---~L~l~~~~~~~~~~~~~i~~l~~L~-~L~l~~~~~~~~~~~~~~~ 154 (396)
.+.++++|++|++++|.++.+|. +..+++|+ +|++++|.....++...+..+++|+ +|++.+|.+...
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i------- 171 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV------- 171 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-------
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-------
Confidence 67899999999999999999887 77888888 9999998456666665588999999 999999987753
Q ss_pred cCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhcc-ccccceeeeccc
Q 044468 155 FGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASL-RHLWTLHLYFND 233 (396)
Q Consensus 155 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~ 233 (396)
....+.. ++ |+.|++.++..........+..+ ++|+.|+++.+.
T Consensus 172 ------~~~~~~~-~~----------------------------L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 172 ------QGYAFNG-TK----------------------------LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp ------CTTTTTT-CE----------------------------EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred ------CHhhcCC-CC----------------------------CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 1122222 33 44444544322233222335666 788888888777
Q ss_pred cceeeeccccccccccccccccCcEeEEeCc
Q 044468 234 FEELNIDAGEVKRIRETRGFHSLQKVYINYS 264 (396)
Q Consensus 234 i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 264 (396)
++.+. .. .+++|++|++.++
T Consensus 217 l~~l~----------~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 217 VTALP----------SK-GLEHLKELIARNT 236 (239)
T ss_dssp CCCCC----------CT-TCTTCSEEECTTC
T ss_pred cccCC----------hh-HhccCceeeccCc
Confidence 76432 22 5788888888776
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=5.1e-18 Score=158.76 Aligned_cols=261 Identities=16% Similarity=0.145 Sum_probs=180.5
Q ss_pred ccCCCccccEEEcccccccc-----ccCC-CCCCCCcEEEccCCccC----ccChHH------HhcCccccEEEeecCCC
Q 044468 9 RIGMWKEITRMSLMQNAIQN-----LTET-PTCPHLRALFLHSNHLG----TVSNNF------FHSMASLRVLIFLYNRS 72 (396)
Q Consensus 9 ~~~~~~~L~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~----~~~~~~------~~~l~~L~~L~l~~~~~ 72 (396)
.+..+++|++|++++|.+.. ++.. ..+++|++|++++|.+. .+|.++ +..+++|++|++++| .
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~ 105 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-A 105 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-C
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-c
Confidence 45667899999999998876 3333 68999999999998554 344442 478999999999999 5
Q ss_pred Ccc-----ccccccCCCcCCEEEccCCCCC-----ccchhhhcC---------CcccEEecccccCC-CCCCc--chhcC
Q 044468 73 LEN-----LPLGILNLVSLQHLDLSWTGIT-----TLPIELKYL---------VNLKCLNLEYTFCL-SRIPQ--PVISD 130 (396)
Q Consensus 73 ~~~-----l~~~l~~l~~L~~L~l~~~~l~-----~l~~~l~~l---------~~L~~L~l~~~~~~-~~~~~--~~i~~ 130 (396)
++. +|..+..+++|++|++++|.++ .++..+..+ ++|++|++++|... ..++. ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 654 6677889999999999999886 233344455 89999999998654 23331 22678
Q ss_pred CCcccEEEeeccCccchhccchhccCCchhhhH-hhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCC
Q 044468 131 LKMLRALRMFECGFKVEQEADRILFGDSEVLVE-ELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNN 209 (396)
Q Consensus 131 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 209 (396)
+++|++|++.+|.+... +...... .+..+++|+.|+++.+.........-...+.++++|+.|+++++.-
T Consensus 186 ~~~L~~L~L~~n~l~~~---------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPE---------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp CTTCCEEECCSSCCCHH---------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred CCCcCEEECcCCCCCHh---------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 89999999999988742 0011334 7788999999999998874321111112345677799999998753
Q ss_pred Ccccch----hhhh--ccccccceeeeccccceeeeccccccccccc--cccccCcEeEEeCceeecCCc----c-CCCC
Q 044468 210 SNLLSA----FSFA--SLRHLWTLHLYFNDFEELNIDAGEVKRIRET--RGFHSLQKVYINYSKFRHATW----L-VLAP 276 (396)
Q Consensus 210 ~~~~~~----~~l~--~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~l~~----l-~~l~ 276 (396)
..... ..+. .+++|++|+++.|.+.+.+.. .+|.. ..+++|++|++.+|.++.... + ..++
T Consensus 257 -~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~-----~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~ 330 (386)
T 2ca6_A 257 -SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR-----TLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 330 (386)
T ss_dssp -CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH-----HHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHH
T ss_pred -chhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH-----HHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhh
Confidence 33211 2232 279999999998888753211 12221 157999999999997776442 1 1245
Q ss_pred CccEEeecc
Q 044468 277 RAKVIRISN 285 (396)
Q Consensus 277 ~L~~L~l~~ 285 (396)
.++.+++..
T Consensus 331 ~~~~~~l~~ 339 (386)
T 2ca6_A 331 TRGRGELDE 339 (386)
T ss_dssp HHTCCEECC
T ss_pred hcCcchhhh
Confidence 555555543
No 90
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=1.2e-18 Score=172.30 Aligned_cols=263 Identities=14% Similarity=0.111 Sum_probs=116.5
Q ss_pred CccccEEEcccccccc--ccCC-CCCCCCcEEEccCC-ccCc--cChHHHhcCccccEEEeecCCCCcc-----cccccc
Q 044468 13 WKEITRMSLMQNAIQN--LTET-PTCPHLRALFLHSN-HLGT--VSNNFFHSMASLRVLIFLYNRSLEN-----LPLGIL 81 (396)
Q Consensus 13 ~~~L~~L~l~~~~~~~--l~~~-~~~~~L~~L~l~~~-~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~-----l~~~l~ 81 (396)
+++|++|+++++.+.. +... ..+++|+.|++.+| .+.. ++. ++..+++|++|++++| .++. ++....
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRES-DVDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTC-EEECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCC-ccCCcchHHHHHHhh
Confidence 4455555555555443 1111 24555555555555 3322 222 1345555666666555 2221 111122
Q ss_pred CCCcCCEEEccCCC--CC--ccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCc-------cchhcc
Q 044468 82 NLVSLQHLDLSWTG--IT--TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGF-------KVEQEA 150 (396)
Q Consensus 82 ~l~~L~~L~l~~~~--l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~-------~~~~~~ 150 (396)
.+++|++|++++|. ++ .++....++++|++|++.+|.....++.. +..+++|++|++..+.. ......
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHH
Confidence 44556666665553 22 12222334556666666555322223332 44555566655443321 000000
Q ss_pred ---------c-hhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhh-h
Q 044468 151 ---------D-RILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSF-A 219 (396)
Q Consensus 151 ---------~-~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l-~ 219 (396)
. ++...........+..+++|+.|++..+...... +. ..+.++++|+.|++.++ ........+ .
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~-l~--~~~~~~~~L~~L~l~~~--~~~~~l~~l~~ 335 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD-LV--KLLCQCPKLQRLWVLDY--IEDAGLEVLAS 335 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH-HH--HHHTTCTTCCEEEEEGG--GHHHHHHHHHH
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH-HH--HHHhcCCCcCEEeCcCc--cCHHHHHHHHH
Confidence 0 0000001111122224455665555554422111 10 11234555666766655 222222222 2
Q ss_pred ccccccceeee---------ccccceeeeccccccccccccccccCcEeEEeCceeec--CCccC-CCCCccEEeec---
Q 044468 220 SLRHLWTLHLY---------FNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRH--ATWLV-LAPRAKVIRIS--- 284 (396)
Q Consensus 220 ~~~~L~~L~l~---------~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--l~~l~-~l~~L~~L~l~--- 284 (396)
.+++|++|++. ++.+.+..+.... ..+++|++|.+..+.+++ +..+. .+++|++|+++
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~-------~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS-------MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH-------HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHH-------HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 46667777663 2333322211110 147888998665556665 23333 48999999998
Q ss_pred --cccccc
Q 044468 285 --NCQRLQ 290 (396)
Q Consensus 285 --~~~~l~ 290 (396)
+|..++
T Consensus 409 ~~~~~~l~ 416 (594)
T 2p1m_B 409 PKAPDYLT 416 (594)
T ss_dssp TTCCCTTT
T ss_pred CCCccccc
Confidence 455555
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=2.5e-16 Score=141.24 Aligned_cols=130 Identities=22% Similarity=0.305 Sum_probs=75.0
Q ss_pred ccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCE
Q 044468 9 RIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQH 88 (396)
Q Consensus 9 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~ 88 (396)
.+..+++|++|++++|.+..++....+++|+.|++++|.+..++. +..+++|++|++++| .++.++. +..+++|++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCE
T ss_pred chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChh-hccCCCCCE
Confidence 344455666666666666655444556666666666666655544 556666666666666 4554433 556666666
Q ss_pred EEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468 89 LDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV 146 (396)
Q Consensus 89 L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~ 146 (396)
|++++|.++.++ .+..+++|++|++++|. ...++ . +..+++|++|++++|.+..
T Consensus 117 L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~-l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 117 LSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp EECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-G-GGGCTTCSEEECCSSCCCC
T ss_pred EECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcch-h-hccCCCCCEEEccCCcccc
Confidence 666666665553 35556666666666653 33332 2 5566666666666665554
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=3e-16 Score=132.35 Aligned_cols=153 Identities=18% Similarity=0.243 Sum_probs=125.3
Q ss_pred cCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCc-cccccccCCCcCCE
Q 044468 10 IGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLE-NLPLGILNLVSLQH 88 (396)
Q Consensus 10 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~l~~~l~~l~~L~~ 88 (396)
.+.+++|++|++++|.+..++....+++|+.|++++|.+..++. +..+++|++|++++| .++ ..+..++.+++|++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCE
T ss_pred hhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECC-ccCcccChhhcCCCCCCE
Confidence 35678899999999999888855889999999999997776653 888999999999999 555 46777889999999
Q ss_pred EEccCCCCC-ccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhc
Q 044468 89 LDLSWTGIT-TLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLA 167 (396)
Q Consensus 89 L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 167 (396)
|++++|.++ ..+..+..+++|++|++++|.....++. +..+++|++|++.+|.+... ..+..
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~---------------~~l~~ 179 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY---------------RGIED 179 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC---------------TTGGG
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh---------------HHhcc
Confidence 999999888 4677788999999999999865677763 88999999999999988753 26778
Q ss_pred CCCCcEEEEEecccc
Q 044468 168 LKHLNLLTVTLQIFG 182 (396)
Q Consensus 168 l~~L~~L~l~~~~~~ 182 (396)
+++|+.|++.++...
T Consensus 180 l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 180 FPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSCCEEEECBC---
T ss_pred CCCCCEEEeeCcccC
Confidence 888998888877653
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=5.2e-17 Score=147.22 Aligned_cols=228 Identities=14% Similarity=0.061 Sum_probs=137.8
Q ss_pred CCCcEEEccCCccCc--cChH-HHhcCccccEEEeecCCCCccccccc--cCCCcCCEEEccCCCCCc-cc----hhhhc
Q 044468 36 PHLRALFLHSNHLGT--VSNN-FFHSMASLRVLIFLYNRSLENLPLGI--LNLVSLQHLDLSWTGITT-LP----IELKY 105 (396)
Q Consensus 36 ~~L~~L~l~~~~~~~--~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~l--~~l~~L~~L~l~~~~l~~-l~----~~l~~ 105 (396)
..++.+.+.++.+.. +... .+..+++|++|++++|...+..|..+ ..+++|++|++++|.++. .+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 356778888876642 1110 12345679999999994444666666 889999999999998874 22 23467
Q ss_pred CCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhh--hHhhhcCCCCcEEEEEecccch
Q 044468 106 LVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVL--VEELLALKHLNLLTVTLQIFGA 183 (396)
Q Consensus 106 l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~ 183 (396)
+++|++|++++|.. ..++...++.+++|++|++++|.+.+. ... ...+..+++|+.|+++.+....
T Consensus 144 ~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 211 (310)
T 4glp_A 144 KPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGE-----------RGLMAALCPHKFPAIQNLALRNTGMET 211 (310)
T ss_dssp CSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHH-----------HHHHTTSCTTSSCCCCSCBCCSSCCCC
T ss_pred ccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccc-----------hhhhHHHhhhcCCCCCEEECCCCCCCc
Confidence 99999999999855 444443488999999999999987642 011 1233678888888888887754
Q ss_pred hhhhhhccCCCCCcccceEEecccCCCcc--cchhhhhccccccceeeeccccceeeeccccccccccccccccCcEeEE
Q 044468 184 LQRLLNYCNSSRSINTQSLCLRHLNNSNL--LSAFSFASLRHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYI 261 (396)
Q Consensus 184 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l 261 (396)
++..... .+.++++|+.|+++++.-... .....+..+++|++|+++.|.++.+. .. .+++|++|++
T Consensus 212 l~~~~~~-l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp----------~~-~~~~L~~L~L 279 (310)
T 4glp_A 212 PTGVCAA-LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP----------KG-LPAKLRVLDL 279 (310)
T ss_dssp HHHHHHH-HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC----------SC-CCSCCSCEEC
T ss_pred hHHHHHH-HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh----------hh-hcCCCCEEEC
Confidence 4432110 012233466666665432111 11111112246666666655555321 11 2356666666
Q ss_pred eCceeecCCccCCCCCccEEeecccc
Q 044468 262 NYSKFRHATWLVLAPRAKVIRISNCQ 287 (396)
Q Consensus 262 ~~~~l~~l~~l~~l~~L~~L~l~~~~ 287 (396)
++|.++.++.+..+++|++|++++++
T Consensus 280 s~N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 280 SSNRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred CCCcCCCCchhhhCCCccEEECcCCC
Confidence 66655555555555666666665543
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=7.3e-16 Score=135.23 Aligned_cols=175 Identities=21% Similarity=0.230 Sum_probs=114.6
Q ss_pred ccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEcc
Q 044468 14 KEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLS 92 (396)
Q Consensus 14 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~ 92 (396)
.+.++++++++.+..+|..- .++++.|++++|.+..++...+..+++|++|++++| .+..++ ..+.++++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence 34567777777777766541 256777777777776665554677777777777777 555443 446677777777777
Q ss_pred CCCCCccch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCC
Q 044468 93 WTGITTLPI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHL 171 (396)
Q Consensus 93 ~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 171 (396)
+|.++.++. .+..+++|++|++++| .+..++...+..+++|++|++.+|.+... ....+..+++|
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~l~~L 157 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSI-------------PAGAFDKLTNL 157 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTC
T ss_pred CCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCcc-------------CHHHcCcCcCC
Confidence 777776654 3567777777777776 34455554466777777777777776653 33456667777
Q ss_pred cEEEEEecccchhhhhhhccCCCCCcccceEEecccC
Q 044468 172 NLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLN 208 (396)
Q Consensus 172 ~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 208 (396)
+.|++..+....++. ..+.++++|+.|++.++.
T Consensus 158 ~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 158 QTLSLSTNQLQSVPH----GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CEEECCSSCCSCCCT----TTTTTCTTCCEEECCSCC
T ss_pred CEEECCCCcCCccCH----HHHhCCCCCCEEEeeCCc
Confidence 777777776665542 234455567777776643
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=8.6e-17 Score=149.04 Aligned_cols=254 Identities=18% Similarity=0.162 Sum_probs=135.6
Q ss_pred EEcccccccc-ccCC-CCCCCCcEEEccCCccCccCh----HHHhcCc-cccEEEeecCCCCccc-cccccCC-----Cc
Q 044468 19 MSLMQNAIQN-LTET-PTCPHLRALFLHSNHLGTVSN----NFFHSMA-SLRVLIFLYNRSLENL-PLGILNL-----VS 85 (396)
Q Consensus 19 L~l~~~~~~~-l~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~l-~~~l~~l-----~~ 85 (396)
+.++.+.+.. ++.. ...++|+.|++++|.+...+. ..+..++ +|++|++++| .++.. +..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCC
Confidence 4566666665 4444 455568888888887766654 4466777 7888888888 55533 3344433 77
Q ss_pred CCEEEccCCCCCccc-hh----hhcC-CcccEEecccccCCCCCCcc---hhcC-CCcccEEEeeccCccchhccchhcc
Q 044468 86 LQHLDLSWTGITTLP-IE----LKYL-VNLKCLNLEYTFCLSRIPQP---VISD-LKMLRALRMFECGFKVEQEADRILF 155 (396)
Q Consensus 86 L~~L~l~~~~l~~l~-~~----l~~l-~~L~~L~l~~~~~~~~~~~~---~i~~-l~~L~~L~l~~~~~~~~~~~~~~~~ 155 (396)
|++|++++|.++..+ .. +..+ ++|++|++++|......+.. .+.. .++|++|++++|.+...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-------- 153 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK-------- 153 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS--------
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH--------
Confidence 888888888776333 22 3344 77888888887543332222 1223 35788888888776642
Q ss_pred CCchhhhHhhhcCC-CCcEEEEEecccchhhhhhhccCCCCC-cccceEEecccCCCcccchh----hhhc-ccccccee
Q 044468 156 GDSEVLVEELLALK-HLNLLTVTLQIFGALQRLLNYCNSSRS-INTQSLCLRHLNNSNLLSAF----SFAS-LRHLWTLH 228 (396)
Q Consensus 156 ~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~----~l~~-~~~L~~L~ 228 (396)
........+...+ +|+.|+++.+.............+..+ ++|+.|+++++. ....... .+.. .++|++|+
T Consensus 154 -~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~ 231 (362)
T 3goz_A 154 -SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLN 231 (362)
T ss_dssp -CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEE
T ss_pred -HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEE
Confidence 1112334445554 677777766655432211111112222 246666666543 2221111 1222 34666666
Q ss_pred eeccccceeeeccccccccccccccccCcEeEEeCceeecCC---------ccCCCCCccEEeecccc
Q 044468 229 LYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT---------WLVLAPRAKVIRISNCQ 287 (396)
Q Consensus 229 l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~---------~l~~l~~L~~L~l~~~~ 287 (396)
++.|.+.+.+...... .+ ..+++|++|++++|.+..+. .+..+++|++|+++++.
T Consensus 232 Ls~N~l~~~~~~~l~~-~~---~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 232 LCLNCLHGPSLENLKL-LK---DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCSSCCCCCCHHHHHH-TT---TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CcCCCCCcHHHHHHHH-HH---hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 6666665543311100 00 14566666666666433221 23445566666666554
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=1.1e-15 Score=134.11 Aligned_cols=166 Identities=24% Similarity=0.303 Sum_probs=127.9
Q ss_pred CCCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-c
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-L 78 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~ 78 (396)
.++..+|. .-.+++++|++++|.+..++.. ..+++|++|++++|.+..++...+..+++|++|++++| .++.++ .
T Consensus 24 ~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 101 (251)
T 3m19_A 24 KSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLG 101 (251)
T ss_dssp CCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTT
T ss_pred CCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChh
Confidence 34555653 1235788999999988886543 78889999999999888777666788899999999998 666665 4
Q ss_pred cccCCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468 79 GILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGD 157 (396)
Q Consensus 79 ~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 157 (396)
.+..+++|++|++++|.++.++.. +.++++|++|++++| .+..++...++.+++|++|++.+|.+...
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------- 170 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSV---------- 170 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC----------
T ss_pred HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCcc----------
Confidence 567888999999999988877765 578889999999888 45556654488889999999999888764
Q ss_pred chhhhHhhhcCCCCcEEEEEecccch
Q 044468 158 SEVLVEELLALKHLNLLTVTLQIFGA 183 (396)
Q Consensus 158 ~~~~~~~l~~l~~L~~L~l~~~~~~~ 183 (396)
....+..+++|+.|++.++....
T Consensus 171 ---~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 ---PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ---CTTTTTTCTTCCEEECCSCCBCT
T ss_pred ---CHHHHhCCCCCCEEEeeCCceeC
Confidence 34567778888888888877643
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=2.8e-15 Score=134.41 Aligned_cols=158 Identities=23% Similarity=0.312 Sum_probs=136.9
Q ss_pred CCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccC
Q 044468 3 GLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILN 82 (396)
Q Consensus 3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~ 82 (396)
++..++.+..+++|++|++++|.+..++....+++|+.|++++|.+..++. +..+++|++|++++| .++.++ .+..
T Consensus 57 ~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n-~i~~~~-~l~~ 132 (291)
T 1h6t_A 57 DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN-GISDIN-GLVH 132 (291)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTS-CCCCCG-GGGG
T ss_pred CcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCC-cCCCCh-hhcC
Confidence 466677888999999999999999997767889999999999999988765 899999999999999 777764 5889
Q ss_pred CCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhh
Q 044468 83 LVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLV 162 (396)
Q Consensus 83 l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 162 (396)
+++|++|++++|.++.+ ..+..+++|++|++++|. ...++. +..+++|++|++++|.+...
T Consensus 133 l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~~l--------------- 193 (291)
T 1h6t_A 133 LPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISDL--------------- 193 (291)
T ss_dssp CTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCBC---------------
T ss_pred CCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCCCC---------------
Confidence 99999999999999988 578899999999999984 444444 88999999999999988753
Q ss_pred HhhhcCCCCcEEEEEecccch
Q 044468 163 EELLALKHLNLLTVTLQIFGA 183 (396)
Q Consensus 163 ~~l~~l~~L~~L~l~~~~~~~ 183 (396)
..+..+++|+.|++.++....
T Consensus 194 ~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 194 RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGTTCTTCSEEEEEEEEEEC
T ss_pred hhhccCCCCCEEECcCCcccC
Confidence 357889999999999887644
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=7.2e-17 Score=149.56 Aligned_cols=263 Identities=13% Similarity=0.049 Sum_probs=173.2
Q ss_pred EEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-----ccccCCC-cCCEEEccCCCCCcc-chhhhcC-----C
Q 044468 40 ALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-----LGILNLV-SLQHLDLSWTGITTL-PIELKYL-----V 107 (396)
Q Consensus 40 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-----~~l~~l~-~L~~L~l~~~~l~~l-~~~l~~l-----~ 107 (396)
++.++.+.+....+.++....+|++|++++| .++..+ ..+..++ +|++|++++|.++.. +..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4678888887655564566667999999999 676554 4567788 899999999998844 4445554 9
Q ss_pred cccEEecccccCCCCCCcc---hhcCC-CcccEEEeeccCccchhccchhccCCchhhhHhhhcC-CCCcEEEEEecccc
Q 044468 108 NLKCLNLEYTFCLSRIPQP---VISDL-KMLRALRMFECGFKVEQEADRILFGDSEVLVEELLAL-KHLNLLTVTLQIFG 182 (396)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~---~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~ 182 (396)
+|++|++++|......+.. .+..+ ++|++|++++|.+... ........+..+ +.|+.|+++++...
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~---------~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK---------SSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS---------CHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH---------HHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 9999999999655444332 13344 8999999999998763 111223345553 69999999988775
Q ss_pred hhhhhhhccCCCCCc-ccceEEecccCCCcccchh----hhhcc-ccccceeeeccccceeeeccccccccccc-cc-cc
Q 044468 183 ALQRLLNYCNSSRSI-NTQSLCLRHLNNSNLLSAF----SFASL-RHLWTLHLYFNDFEELNIDAGEVKRIRET-RG-FH 254 (396)
Q Consensus 183 ~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~i~~l~~~~~~~~~~~~~-~~-~~ 254 (396)
......-...+...+ +|+.|+++++. ....... .+..+ ++|++|+++.|.+.+.+... ++.. .. .+
T Consensus 152 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~-----l~~~l~~~~~ 225 (362)
T 3goz_A 152 IKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE-----LAYIFSSIPN 225 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH-----HHHHHHHSCT
T ss_pred HHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH-----HHHHHhcCCC
Confidence 321111111122222 59999999864 3333322 24445 59999999988887644321 1211 12 46
Q ss_pred cCcEeEEeCceeecCCc------cCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCc
Q 044468 255 SLQKVYINYSKFRHATW------LVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQ 324 (396)
Q Consensus 255 ~L~~L~l~~~~l~~l~~------l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 324 (396)
+|++|++++|.+++.+. +..+++|++|++++|. +..+...... .+......+++|+.|+++++.
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~-----~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCK-----ALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHH-----HHHTTSTTCCEEEEECTTSCB
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHH-----HHHHHhccCCceEEEecCCCc
Confidence 99999999998777532 4668999999999886 2222111100 122245678889999998875
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=2e-15 Score=133.22 Aligned_cols=153 Identities=22% Similarity=0.189 Sum_probs=77.8
Q ss_pred CCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCC
Q 044468 5 TGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLV 84 (396)
Q Consensus 5 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~ 84 (396)
.+++.+..+++|++|++++|.+..++....+++|+.|++++|.+..++. +..+++|++|++++| .++.+|... . +
T Consensus 32 ~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~-~-~ 106 (263)
T 1xeu_A 32 TDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIP-S-A 106 (263)
T ss_dssp TSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCC-C-S
T ss_pred ccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCccc-c-C
Confidence 3334444555555555555555555433555555555555555555444 455555555555555 444444322 2 5
Q ss_pred cCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHh
Q 044468 85 SLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEE 164 (396)
Q Consensus 85 ~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (396)
+|++|++++|.++.++ .+.++++|++|++++|. ...++ . ++.+++|++|++.+|.+... ..
T Consensus 107 ~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~-l~~l~~L~~L~L~~N~i~~~---------------~~ 167 (263)
T 1xeu_A 107 CLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-M-LGFLSKLEVLDLHGNEITNT---------------GG 167 (263)
T ss_dssp SCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-G-GGGCTTCCEEECTTSCCCBC---------------TT
T ss_pred cccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-H-HccCCCCCEEECCCCcCcch---------------HH
Confidence 5555555555555543 34555555555555552 22233 1 55555555555555554431 34
Q ss_pred hhcCCCCcEEEEEeccc
Q 044468 165 LLALKHLNLLTVTLQIF 181 (396)
Q Consensus 165 l~~l~~L~~L~l~~~~~ 181 (396)
+..+++|+.|++.++..
T Consensus 168 l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp STTCCCCCEEEEEEEEE
T ss_pred hccCCCCCEEeCCCCcc
Confidence 44455555555555444
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=2e-15 Score=148.35 Aligned_cols=174 Identities=22% Similarity=0.267 Sum_probs=125.5
Q ss_pred CCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCC
Q 044468 5 TGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLV 84 (396)
Q Consensus 5 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~ 84 (396)
.++..+..+++|+.|+++++.+..++....+++|+.|++++|.+..+++ +..+++|++|++++| .+..+| .+..++
T Consensus 34 ~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~ 109 (605)
T 1m9s_A 34 TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLK 109 (605)
T ss_dssp TSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCT
T ss_pred ccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCC
Confidence 3444455677788888888888777655778888888888888877765 778888888888888 666655 577788
Q ss_pred cCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHh
Q 044468 85 SLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEE 164 (396)
Q Consensus 85 ~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (396)
+|++|++++|.++.++ .+..+++|+.|++++|. +..++ . +..+++|+.|++++|.+... . .
T Consensus 110 ~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~-l~~l~~L~~L~Ls~N~l~~~-------------~--~ 170 (605)
T 1m9s_A 110 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDNQISDI-------------V--P 170 (605)
T ss_dssp TCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCG-G-GGSCTTCSEEECCSSCCCCC-------------G--G
T ss_pred CCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCch-h-hcccCCCCEEECcCCcCCCc-------------h--h
Confidence 8888888888887764 47778888888888874 33442 2 77888888888888877653 1 1
Q ss_pred hhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEeccc
Q 044468 165 LLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHL 207 (396)
Q Consensus 165 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 207 (396)
+..+++|+.|+++.+.+..++ .+.++++|+.|++.++
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDLR------ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBCG------GGTTCTTCSEEECCSE
T ss_pred hccCCCCCEEECcCCCCCCCh------HHccCCCCCEEEccCC
Confidence 677778888887777665543 2444556777777664
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=7.5e-15 Score=126.81 Aligned_cols=130 Identities=28% Similarity=0.380 Sum_probs=61.9
Q ss_pred ccccEEEcccccccccc-CC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEE
Q 044468 14 KEITRMSLMQNAIQNLT-ET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLD 90 (396)
Q Consensus 14 ~~L~~L~l~~~~~~~l~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~ 90 (396)
++|++|++++|.+..+. .. ..+++|+.|++++|.+..++...+..+++|++|++++| .++.++. .+..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEe
Confidence 44555555555555432 22 44555555555555554444443445555555555555 4443332 234455555555
Q ss_pred ccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCcc
Q 044468 91 LSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFK 145 (396)
Q Consensus 91 l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~ 145 (396)
+++|.++.+|..+.++++|++|++++| .+..++...+..+++|+.|++.+|.+.
T Consensus 119 Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 119 MCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555555555544555555555555554 223333333444555555555554443
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=8.9e-16 Score=139.06 Aligned_cols=225 Identities=13% Similarity=0.086 Sum_probs=160.2
Q ss_pred cccEEEcccccccc--cc---CCCCCCCCcEEEccCCccC-ccChHHH--hcCccccEEEeecCCCCcc-cc----cccc
Q 044468 15 EITRMSLMQNAIQN--LT---ETPTCPHLRALFLHSNHLG-TVSNNFF--HSMASLRVLIFLYNRSLEN-LP----LGIL 81 (396)
Q Consensus 15 ~L~~L~l~~~~~~~--l~---~~~~~~~L~~L~l~~~~~~-~~~~~~~--~~l~~L~~L~l~~~~~~~~-l~----~~l~ 81 (396)
.++.+.+.++.+.. +. ....+++|+.|++++|.+. ..+.. + ..+++|++|++++| .++. .+ ..+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPL-PLEATGLALSSLRLRNV-SWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCC-SSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhh-hhhccCCCCCEEEeecc-cccchhhhhHHHHhh
Confidence 47888888877654 22 2234567999999999886 44444 5 88999999999999 5543 22 2345
Q ss_pred CCCcCCEEEccCCCCCccc-hhhhcCCcccEEecccccCCCC--CC-cchhcCCCcccEEEeeccCccchhccchhccCC
Q 044468 82 NLVSLQHLDLSWTGITTLP-IELKYLVNLKCLNLEYTFCLSR--IP-QPVISDLKMLRALRMFECGFKVEQEADRILFGD 157 (396)
Q Consensus 82 ~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~--~~-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 157 (396)
.+++|++|++++|.+..++ ..+.++++|++|++++|...+. ++ ...++.+++|++|++++|.++..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l---------- 212 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP---------- 212 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH----------
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch----------
Confidence 7899999999999998665 5688999999999999865432 21 22246889999999999998753
Q ss_pred chhhhH-hhhcCCCCcEEEEEecccchh-hhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccc
Q 044468 158 SEVLVE-ELLALKHLNLLTVTLQIFGAL-QRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFE 235 (396)
Q Consensus 158 ~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 235 (396)
+.... .+..+++|+.|+++.+..... +.. ...+...++|+.|+++++.-. .... .+ +++|+.|+++.|.++
T Consensus 213 -~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~--~~~~~~~~~L~~L~Ls~N~l~-~lp~-~~--~~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 213 -TGVCAALAAAGVQPHSLDLSHNSLRATVNPS--APRCMWSSALNSLNLSFAGLE-QVPK-GL--PAKLRVLDLSSNRLN 285 (310)
T ss_dssp -HHHHHHHHHHTCCCSSEECTTSCCCCCCCSC--CSSCCCCTTCCCEECCSSCCC-SCCS-CC--CSCCSCEECCSCCCC
T ss_pred -HHHHHHHHhcCCCCCEEECCCCCCCccchhh--HHhccCcCcCCEEECCCCCCC-chhh-hh--cCCCCEEECCCCcCC
Confidence 12222 357889999999999887654 110 122222367999999886433 2221 12 379999999999988
Q ss_pred eeeeccccccccccccccccCcEeEEeCceeec
Q 044468 236 ELNIDAGEVKRIRETRGFHSLQKVYINYSKFRH 268 (396)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 268 (396)
.+.. . ..+++|++|++++|.+++
T Consensus 286 ~~~~-~---------~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 286 RAPQ-P---------DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCC-T---------TSCCCCSCEECSSTTTSC
T ss_pred CCch-h---------hhCCCccEEECcCCCCCC
Confidence 6532 1 178999999999996654
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=6.3e-15 Score=124.21 Aligned_cols=139 Identities=22% Similarity=0.265 Sum_probs=116.3
Q ss_pred CCCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCc-cChHHHhcCccccEEEeecCCCCc-ccccc
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGT-VSNNFFHSMASLRVLIFLYNRSLE-NLPLG 79 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~-~l~~~ 79 (396)
-++..++.+..+++|++|++++|.+..++....+++|++|++++|.+.. .+.. +..+++|++|++++| .++ ..+..
T Consensus 54 n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n-~i~~~~~~~ 131 (197)
T 4ezg_A 54 INVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHS-AHDDSILTK 131 (197)
T ss_dssp SCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSS-BCBGGGHHH
T ss_pred CCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEecCC-ccCcHhHHH
Confidence 3566777888999999999999988877766889999999999999875 4444 899999999999999 555 46777
Q ss_pred ccCCCcCCEEEccCCC-CCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468 80 ILNLVSLQHLDLSWTG-ITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV 146 (396)
Q Consensus 80 l~~l~~L~~L~l~~~~-l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~ 146 (396)
++.+++|++|++++|. ++.+| .+.++++|++|++++|. ...++ . +..+++|++|++.+|.+.+
T Consensus 132 l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~-l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 132 INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-G-IEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-T-GGGCSSCCEEEECBC----
T ss_pred HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-H-hccCCCCCEEEeeCcccCC
Confidence 8999999999999997 88887 68999999999999984 44555 3 8899999999999998754
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=1.1e-14 Score=124.93 Aligned_cols=151 Identities=18% Similarity=0.225 Sum_probs=111.8
Q ss_pred cEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccCCC
Q 044468 17 TRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSWTG 95 (396)
Q Consensus 17 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~~ 95 (396)
+.++.++++++.+|.. -.++|+.|++++|.+..++...+..+++|++|++++| .+..+ |..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc
Confidence 5677888888777764 1267888888888887777655788888888888888 55554 5677888888888888888
Q ss_pred CCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEE
Q 044468 96 ITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLL 174 (396)
Q Consensus 96 l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 174 (396)
++.+|.. +.++++|++|++++|.+ ..++...+..+++|++|++.+|.+... ....+..+++|+.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTI-------------AKGTFSPLRAIQTM 157 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCC-------------CTTTTTTCTTCCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCC-CEeCHHHcCCCCCCCEEECCCCcCCEE-------------CHHHHhCCCCCCEE
Confidence 8877765 56788888888888744 444333377888888888888887764 33456677788888
Q ss_pred EEEecccch
Q 044468 175 TVTLQIFGA 183 (396)
Q Consensus 175 ~l~~~~~~~ 183 (396)
++.++....
T Consensus 158 ~L~~N~~~c 166 (220)
T 2v9t_B 158 HLAQNPFIC 166 (220)
T ss_dssp ECCSSCEEC
T ss_pred EeCCCCcCC
Confidence 877776543
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=1.7e-14 Score=123.79 Aligned_cols=142 Identities=27% Similarity=0.360 Sum_probs=119.3
Q ss_pred CCCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccc
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG 79 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~ 79 (396)
.+++.+|. .-.+++++|++++|.+..++.. ..+++|+.|++++|.+..+.+..+..+++|++|++++| .++.+|..
T Consensus 21 ~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~ 98 (220)
T 2v9t_B 21 KGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKS 98 (220)
T ss_dssp SCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred CCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHh
Confidence 45667764 1236899999999999997653 88999999999999998875555999999999999999 78877754
Q ss_pred -ccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468 80 -ILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV 146 (396)
Q Consensus 80 -l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~ 146 (396)
+.++++|++|++++|.++.+ |..+..+++|++|++++| .+..++...+..+++|++|++.+|.+.-
T Consensus 99 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 67899999999999999976 456889999999999998 4555565558899999999999998754
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=2.8e-14 Score=121.36 Aligned_cols=131 Identities=26% Similarity=0.364 Sum_probs=70.2
Q ss_pred CccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEE
Q 044468 13 WKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHL 89 (396)
Q Consensus 13 ~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L 89 (396)
.+++++|++++|.+..++.. ..+++|+.|++++|.+..++...+..+++|++|++++| .++.++. .+.++++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence 34556666666655554432 45556666666666555555444455566666666665 4444432 24555666666
Q ss_pred EccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCcc
Q 044468 90 DLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFK 145 (396)
Q Consensus 90 ~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~ 145 (396)
++++|.++.++.. +.++++|++|++++|. ...++...+..+++|++|++.+|.+.
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee
Confidence 6666655554443 4555566666665552 33334333555556666666555443
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=1.2e-14 Score=142.84 Aligned_cols=158 Identities=23% Similarity=0.299 Sum_probs=137.0
Q ss_pred CCCCCCccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccC
Q 044468 3 GLTGAPRIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILN 82 (396)
Q Consensus 3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~ 82 (396)
++..++.+..+++|+.|++++|.+..++....+++|+.|++++|.+..++. +..+++|++|++++| .+..++ .+..
T Consensus 54 ~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~ 129 (605)
T 1m9s_A 54 DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHN-GISDIN-GLVH 129 (605)
T ss_dssp CCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTT--STTCTTCCEEECTTS-CCCCCG-GGGG
T ss_pred CCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChh--hccCCCCCEEEecCC-CCCCCc-cccC
Confidence 466678889999999999999999997767899999999999999988764 899999999999999 777764 5889
Q ss_pred CCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhh
Q 044468 83 LVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLV 162 (396)
Q Consensus 83 l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 162 (396)
+++|+.|++++|.++.+ ..+..+++|++|++++|.+.. ++. +..+++|+.|++++|.+...
T Consensus 130 l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~i~~l--------------- 190 (605)
T 1m9s_A 130 LPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISDL--------------- 190 (605)
T ss_dssp CTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCBC---------------
T ss_pred CCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC-chh--hccCCCCCEEECcCCCCCCC---------------
Confidence 99999999999999988 578899999999999985444 433 88999999999999988752
Q ss_pred HhhhcCCCCcEEEEEecccch
Q 044468 163 EELLALKHLNLLTVTLQIFGA 183 (396)
Q Consensus 163 ~~l~~l~~L~~L~l~~~~~~~ 183 (396)
..+..+++|+.|++..+.+..
T Consensus 191 ~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 191 RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GGGTTCTTCSEEECCSEEEEC
T ss_pred hHHccCCCCCEEEccCCcCcC
Confidence 468889999999998887654
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=2e-15 Score=133.20 Aligned_cols=165 Identities=15% Similarity=0.140 Sum_probs=124.6
Q ss_pred CCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEc
Q 044468 12 MWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDL 91 (396)
Q Consensus 12 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l 91 (396)
.+.+++.+++.++.+..++....+++|+.|++++|.+..++ . +..+++|++|++++| .++.++. +.++++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-G-MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-T-GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-H-HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 45667778888888888774478889999999999888887 3 788999999999999 7777766 888999999999
Q ss_pred cCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCC
Q 044468 92 SWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHL 171 (396)
Q Consensus 92 ~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 171 (396)
++|.++.+|.... ++|++|++++|. ...++. +..+++|++|++++|.++.. ..+..+++|
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~~---------------~~l~~l~~L 152 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTDS--LIHLKNLEILSIRNNKLKSI---------------VMLGFLSKL 152 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSC-CSBSGG--GTTCTTCCEEECTTSCCCBC---------------GGGGGCTTC
T ss_pred CCCccCCcCcccc--CcccEEEccCCc-cCCChh--hcCcccccEEECCCCcCCCC---------------hHHccCCCC
Confidence 9998888775433 889999999984 444543 88899999999999887753 356777788
Q ss_pred cEEEEEecccchhhhhhhccCCCCCcccceEEecc
Q 044468 172 NLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRH 206 (396)
Q Consensus 172 ~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 206 (396)
+.|+++.+..... ..+..+++|+.|++.+
T Consensus 153 ~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 153 EVLDLHGNEITNT------GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CEEECTTSCCCBC------TTSTTCCCCCEEEEEE
T ss_pred CEEECCCCcCcch------HHhccCCCCCEEeCCC
Confidence 8777776665443 2233444455555554
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=2.6e-14 Score=122.56 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=117.8
Q ss_pred ccEEEccccccccccCCCCCCCCcEEEccCCccCcc-ChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEEccC
Q 044468 16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTV-SNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLDLSW 93 (396)
Q Consensus 16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~ 93 (396)
-++++++++.++.+|.. -...++.|++++|.+..+ +..++..+++|++|++++| .++.++. .+.++++|++|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCC
Confidence 46888998888887764 234568899999988776 3444788999999999998 6766654 688899999999999
Q ss_pred CCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCc
Q 044468 94 TGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLN 172 (396)
Q Consensus 94 ~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 172 (396)
|.++.++.. +.++++|++|++++|.+....|.. +..+++|++|++.+|.+... ....+..+++|+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~ 156 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS-FIGLSSVRLLSLYDNQITTV-------------APGAFDTLHSLS 156 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS-STTCTTCSEEECTTSCCCCB-------------CTTTTTTCTTCC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhH-cCCCccCCEEECCCCcCCEE-------------CHHHhcCCCCCC
Confidence 988877654 788999999999998544433444 88889999999999988763 456777888888
Q ss_pred EEEEEecccch
Q 044468 173 LLTVTLQIFGA 183 (396)
Q Consensus 173 ~L~l~~~~~~~ 183 (396)
.|++.++....
T Consensus 157 ~L~L~~N~l~c 167 (220)
T 2v70_A 157 TLNLLANPFNC 167 (220)
T ss_dssp EEECCSCCEEC
T ss_pred EEEecCcCCcC
Confidence 88888877643
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=2.8e-14 Score=132.00 Aligned_cols=164 Identities=24% Similarity=0.269 Sum_probs=100.7
Q ss_pred CCCCCCccCCCccccEEEccccccccccCC--C-CCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-
Q 044468 3 GLTGAPRIGMWKEITRMSLMQNAIQNLTET--P-TCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL- 78 (396)
Q Consensus 3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~- 78 (396)
+++.+|. .-.+.++.|++++|.+..++.. . .+++|+.|++++|.+..++...+..+++|++|++++| .++.++.
T Consensus 29 ~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 106 (361)
T 2xot_A 29 QLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEF 106 (361)
T ss_dssp CCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTT
T ss_pred CcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHH
Confidence 4445542 1223567777777777775544 3 6777777777777776666555677777777777777 5555543
Q ss_pred cccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEecccccCCCCCCcchh---cCCCcccEEEeeccCccchhccchhc
Q 044468 79 GILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVI---SDLKMLRALRMFECGFKVEQEADRIL 154 (396)
Q Consensus 79 ~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i---~~l~~L~~L~l~~~~~~~~~~~~~~~ 154 (396)
.+.++++|++|++++|.++.+ |..+.++++|++|++++| .+..+|...+ ..+++|+.|++++|.+...
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l------- 178 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKL------- 178 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCC-------
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCcc-------
Confidence 466677777777777777655 345667777777777776 4445555534 4567777777777766653
Q ss_pred cCCchhhhHhhhcCCC--CcEEEEEecccc
Q 044468 155 FGDSEVLVEELLALKH--LNLLTVTLQIFG 182 (396)
Q Consensus 155 ~~~~~~~~~~l~~l~~--L~~L~l~~~~~~ 182 (396)
....+..++. ++.|++.++...
T Consensus 179 ------~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 ------PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ------CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ------CHHHhhhccHhhcceEEecCCCcc
Confidence 2334444444 255666665543
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=4.6e-14 Score=121.85 Aligned_cols=150 Identities=23% Similarity=0.258 Sum_probs=124.4
Q ss_pred ccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEEccCC
Q 044468 16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLDLSWT 94 (396)
Q Consensus 16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~~ 94 (396)
-+.++.+++.+..+|.. -.++|+.|++++|.+..+++..+..+++|++|++++| .++.+|. .+..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence 56789999988888874 2389999999999998876555899999999999999 7777764 4688999999999999
Q ss_pred CCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468 95 GITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL 173 (396)
Q Consensus 95 ~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 173 (396)
.++.++.. +..+++|++|++++| .+..+|.. +..+++|++|++.+|.+... ....+..+++|+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSI-------------PHGAFDRLSSLTH 163 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCC-------------CTTTTTTCTTCCE
T ss_pred cCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCcc-------------CHHHHhCCCCCCE
Confidence 99988765 678999999999998 45578877 78999999999999988764 3356777888888
Q ss_pred EEEEecccc
Q 044468 174 LTVTLQIFG 182 (396)
Q Consensus 174 L~l~~~~~~ 182 (396)
|++.++...
T Consensus 164 L~l~~N~~~ 172 (229)
T 3e6j_A 164 AYLFGNPWD 172 (229)
T ss_dssp EECTTSCBC
T ss_pred EEeeCCCcc
Confidence 888777653
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.54 E-value=7.2e-14 Score=119.82 Aligned_cols=141 Identities=21% Similarity=0.259 Sum_probs=116.8
Q ss_pred CCCCCCccCCCccccEEEccccccccccC--C-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-c
Q 044468 3 GLTGAPRIGMWKEITRMSLMQNAIQNLTE--T-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-L 78 (396)
Q Consensus 3 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~--~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~ 78 (396)
+++.+|. .-.+.+++|++++|.+..++. . ..+++|+.|++++|.+..++...+..+++|++|++++| .++.++ .
T Consensus 22 ~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 99 (220)
T 2v70_A 22 KLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHK 99 (220)
T ss_dssp CCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGG
T ss_pred CcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHh
Confidence 4555653 223468999999999999733 2 78999999999999999888766999999999999999 667665 4
Q ss_pred cccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468 79 GILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV 146 (396)
Q Consensus 79 ~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~ 146 (396)
.+.++++|++|++++|.++.+ |..+.++++|++|++++|.+....|.. +..+++|++|++.+|.+..
T Consensus 100 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA-FDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT-TTTCTTCCEEECCSCCEEC
T ss_pred HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH-hcCCCCCCEEEecCcCCcC
Confidence 588999999999999999976 566889999999999998544433544 8999999999999998765
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=1.4e-13 Score=117.01 Aligned_cols=149 Identities=25% Similarity=0.273 Sum_probs=117.8
Q ss_pred ccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEEccCC
Q 044468 16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLDLSWT 94 (396)
Q Consensus 16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~~ 94 (396)
-+.++.+++++..++.. ..++|++|++++|.+..++...+..+++|++|++++| .++.++. .+..+++|++|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence 36778888888877653 3468999999999998888776789999999999999 7776664 4678999999999999
Q ss_pred CCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcE
Q 044468 95 GITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNL 173 (396)
Q Consensus 95 ~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 173 (396)
.++.++.. +.++++|++|++++|. ...++...+..+++|++|++.+|.+... ....+..+++|+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~-------------~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSV-------------PDGVFDRLTSLQY 152 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC-------------CTTTTTTCTTCCE
T ss_pred cCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCcccee-------------CHHHhccCCCccE
Confidence 99877765 6889999999999984 4556655578899999999999987763 3334566677777
Q ss_pred EEEEecc
Q 044468 174 LTVTLQI 180 (396)
Q Consensus 174 L~l~~~~ 180 (396)
|++.++.
T Consensus 153 L~l~~N~ 159 (208)
T 2o6s_A 153 IWLHDNP 159 (208)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 7766653
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=3.4e-14 Score=116.45 Aligned_cols=128 Identities=22% Similarity=0.191 Sum_probs=64.4
Q ss_pred ccccEEEccccccc--cccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcc-ccccccCCCcCCEE
Q 044468 14 KEITRMSLMQNAIQ--NLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLEN-LPLGILNLVSLQHL 89 (396)
Q Consensus 14 ~~L~~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-l~~~l~~l~~L~~L 89 (396)
+++++|++++|.+. .++.. ..+++|+.|++++|.+..+ .. +..+++|++|++++| .+.. +|..+.++++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SN-LPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SS-CCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hh-hccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEE
Confidence 44555555555555 34444 4555555555555555444 22 455555555555555 3333 44444445555555
Q ss_pred EccCCCCCccc--hhhhcCCcccEEecccccCCCCCCc---chhcCCCcccEEEeeccCcc
Q 044468 90 DLSWTGITTLP--IELKYLVNLKCLNLEYTFCLSRIPQ---PVISDLKMLRALRMFECGFK 145 (396)
Q Consensus 90 ~l~~~~l~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~---~~i~~l~~L~~L~l~~~~~~ 145 (396)
++++|.++.+| ..+..+++|++|++++|.. ..++. ..+..+++|++|++.+|...
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55555555443 3455555555555555532 22232 22455555555555555443
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=1.8e-14 Score=119.13 Aligned_cols=134 Identities=18% Similarity=0.175 Sum_probs=82.6
Q ss_pred CCccCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccc-cCCC
Q 044468 7 APRIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGI-LNLV 84 (396)
Q Consensus 7 ~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l-~~l~ 84 (396)
.+.+.++++|++|++++|.+..++.. ...++|+.|++++|.+..++ . +..+++|++|++++| .++.+|..+ ..++
T Consensus 12 ~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-G-FPLLRRLKTLLVNNN-RICRIGEGLDQALP 88 (176)
T ss_dssp SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-C-CCCCSSCCEEECCSS-CCCEECSCHHHHCT
T ss_pred HHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc-c-cccCCCCCEEECCCC-cccccCcchhhcCC
Confidence 34455666777777777777666544 33347777777777666552 2 666777777777777 555555433 5667
Q ss_pred cCCEEEccCCCCCccch--hhhcCCcccEEecccccCCCCCCcc---hhcCCCcccEEEeeccCc
Q 044468 85 SLQHLDLSWTGITTLPI--ELKYLVNLKCLNLEYTFCLSRIPQP---VISDLKMLRALRMFECGF 144 (396)
Q Consensus 85 ~L~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~---~i~~l~~L~~L~l~~~~~ 144 (396)
+|++|++++|.++.+|. .+..+++|++|++++|.. ..+|.. ++..+++|+.|++..+..
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 77777777776666665 566666777777766633 233432 355566666666665544
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.50 E-value=2.7e-13 Score=131.90 Aligned_cols=137 Identities=25% Similarity=0.305 Sum_probs=102.0
Q ss_pred cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC
Q 044468 15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT 94 (396)
Q Consensus 15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~ 94 (396)
+++.|++++|.+.++|... .++|+.|++++|.+..+| ..+++|++|++++| .++.+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 7888888888888776642 478888888888888777 34688888888888 6777777 554 8888888888
Q ss_pred CCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEE
Q 044468 95 GITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLL 174 (396)
Q Consensus 95 ~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 174 (396)
.++.+|. .+++|++|++++|. +..+|. .+++|++|++++|.++.. .. +. ++|+.|
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~~l--------------p~-l~--~~L~~L 185 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLTFL--------------PE-LP--ESLEAL 185 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCC--------------CC-CC--TTCCEE
T ss_pred cCCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCCCc--------------ch-hh--CCCCEE
Confidence 8888876 67888888888874 444664 467888888888877653 11 32 677777
Q ss_pred EEEecccchhh
Q 044468 175 TVTLQIFGALQ 185 (396)
Q Consensus 175 ~l~~~~~~~~~ 185 (396)
+++.+.+..++
T Consensus 186 ~Ls~N~L~~lp 196 (571)
T 3cvr_A 186 DVSTNLLESLP 196 (571)
T ss_dssp ECCSSCCSSCC
T ss_pred ECcCCCCCchh
Confidence 77777665443
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=5.2e-14 Score=112.93 Aligned_cols=124 Identities=23% Similarity=0.202 Sum_probs=77.6
Q ss_pred CccccEEEccccccc--cccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcc-ccccccCCCcCCE
Q 044468 13 WKEITRMSLMQNAIQ--NLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLEN-LPLGILNLVSLQH 88 (396)
Q Consensus 13 ~~~L~~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-l~~~l~~l~~L~~ 88 (396)
.+++++|++++|.+. .++.. ..+++|+.|++++|.+..+ .. +..+++|++|++++| .++. +|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-AN-LPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TT-CCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hh-hhcCCCCCEEECCCC-cccchHHHHhhhCCCCCE
Confidence 356777777777776 46555 6677777777777766655 22 666777777777777 4444 5555556677777
Q ss_pred EEccCCCCCccc--hhhhcCCcccEEecccccCCCCCCc---chhcCCCcccEEEee
Q 044468 89 LDLSWTGITTLP--IELKYLVNLKCLNLEYTFCLSRIPQ---PVISDLKMLRALRMF 140 (396)
Q Consensus 89 L~l~~~~l~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~---~~i~~l~~L~~L~l~ 140 (396)
|++++|.++.++ ..+..+++|++|++++|... .++. ..++.+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 777777666544 55666677777777666333 3332 235566666666543
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=2.5e-13 Score=111.29 Aligned_cols=138 Identities=22% Similarity=0.216 Sum_probs=111.3
Q ss_pred CCCCCCcEEEccCCccC--ccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCc-cchhhhcCCcc
Q 044468 33 PTCPHLRALFLHSNHLG--TVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITT-LPIELKYLVNL 109 (396)
Q Consensus 33 ~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~-l~~~l~~l~~L 109 (396)
...++|+.|++++|.+. .+|.. +..+++|++|++++| .++.+ ..+..+++|++|++++|.++. +|..+.++++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CCcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 45688999999999987 78776 789999999999999 67776 678899999999999999986 77777889999
Q ss_pred cEEecccccCCCCCCc-chhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchh
Q 044468 110 KCLNLEYTFCLSRIPQ-PVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGAL 184 (396)
Q Consensus 110 ~~L~l~~~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 184 (396)
++|++++|. ...++. ..+..+++|++|++.+|.+... .......+..+++|+.|++..+.....
T Consensus 98 ~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~----------~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 98 THLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNL----------NDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTS----------TTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcch----------HHHHHHHHHhCccCcEecCCCCChhhc
Confidence 999999984 455442 3388999999999999988763 011124678888999888887766443
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=5.6e-13 Score=123.21 Aligned_cols=157 Identities=19% Similarity=0.191 Sum_probs=122.5
Q ss_pred ccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHh-cCccccEEEeecCCCCcccc-ccccCCCcCCEEEccC
Q 044468 16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFH-SMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSW 93 (396)
Q Consensus 16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~ 93 (396)
-+.++++++++..+|.. -.+.++.|++++|.+..++...+. .+++|++|++++| .+..++ ..+.++++|++|++++
T Consensus 20 ~~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC
Confidence 46899999999988764 234689999999999888877566 8999999999999 777665 5688999999999999
Q ss_pred CCCCccch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCc
Q 044468 94 TGITTLPI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLN 172 (396)
Q Consensus 94 ~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 172 (396)
|.++.++. .+.++++|++|++++|.+ ..++...+..+++|++|++.+|.+... ....+..+..+++|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~L~~N~l~~l----------~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQISRF----------PVELIKDGNKLPKLM 166 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCSC----------CGGGTC----CTTCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcc-cEECHHHhCCcccCCEEECCCCcCCee----------CHHHhcCcccCCcCC
Confidence 99997766 478999999999999854 444443489999999999999988864 111222236788888
Q ss_pred EEEEEecccchhh
Q 044468 173 LLTVTLQIFGALQ 185 (396)
Q Consensus 173 ~L~l~~~~~~~~~ 185 (396)
.|+++.+.+..++
T Consensus 167 ~L~L~~N~l~~l~ 179 (361)
T 2xot_A 167 LLDLSSNKLKKLP 179 (361)
T ss_dssp EEECCSSCCCCCC
T ss_pred EEECCCCCCCccC
Confidence 8888888776543
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=1e-12 Score=127.80 Aligned_cols=169 Identities=20% Similarity=0.175 Sum_probs=125.0
Q ss_pred CCCCCCc-cCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccccc
Q 044468 3 GLTGAPR-IGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGIL 81 (396)
Q Consensus 3 ~l~~~~~-~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~ 81 (396)
++.++|. + .++|++|++++|.+..+| ..+++|+.|++++|.+..+|. +.. +|++|++++| .++.+|.
T Consensus 70 ~L~~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N-~l~~lp~--- 137 (571)
T 3cvr_A 70 NLSSLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNN-QLTMLPE--- 137 (571)
T ss_dssp CCSCCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSS-CCSCCCC---
T ss_pred CCCccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCC-cCCCCCC---
Confidence 4555654 3 478999999999999888 678999999999999988876 444 9999999999 7777877
Q ss_pred CCCcCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhh
Q 044468 82 NLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVL 161 (396)
Q Consensus 82 ~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 161 (396)
.+++|++|++++|.++.+|. .+++|++|++++|. +..+|. +. ++|++|++++|.++.+ +..
T Consensus 138 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~l-----------p~~ 198 (571)
T 3cvr_A 138 LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLESL-----------PAV 198 (571)
T ss_dssp CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSSC-----------CCC
T ss_pred cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCch-----------hhH
Confidence 68999999999999999886 67899999999984 555776 54 8999999999988764 110
Q ss_pred hHh-hhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEeccc
Q 044468 162 VEE-LLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHL 207 (396)
Q Consensus 162 ~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 207 (396)
... ....+.|+.|++.++.+..++. .+.++++|+.|+++++
T Consensus 199 ~~~L~~~~~~L~~L~Ls~N~l~~lp~-----~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 199 PVRNHHSEETEIFFRCRENRITHIPE-----NILSLDPTCTIILEDN 240 (571)
T ss_dssp C--------CCEEEECCSSCCCCCCG-----GGGGSCTTEEEECCSS
T ss_pred HHhhhcccccceEEecCCCcceecCH-----HHhcCCCCCEEEeeCC
Confidence 000 0111223777777776655443 1223455677777664
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.42 E-value=9.2e-13 Score=110.37 Aligned_cols=128 Identities=23% Similarity=0.290 Sum_probs=106.1
Q ss_pred ccEEEccccccccccCCCCCCCCcEEEccCCccCccChH-HHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccC
Q 044468 16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNN-FFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSW 93 (396)
Q Consensus 16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~ 93 (396)
-++++++++++..+|.. -..+|+.|++++|.+..++.. ++..+++|++|++++| .++.+ |..+.++++|++|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence 37899999999888875 223899999999999877653 4789999999999999 66655 67889999999999999
Q ss_pred CCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468 94 TGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV 146 (396)
Q Consensus 94 ~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~ 146 (396)
|.++.++.. +.++++|++|++++|.+....|.. +..+++|++|++.+|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCCccC
Confidence 999976654 788999999999998655555554 8899999999999998765
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.41 E-value=2.5e-12 Score=107.76 Aligned_cols=127 Identities=20% Similarity=0.268 Sum_probs=105.7
Q ss_pred ccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCC
Q 044468 16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWT 94 (396)
Q Consensus 16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~ 94 (396)
-+.++++++++..+|.. -.++|+.|++++|.+..+|.. +..+++|++|++++| .++.++ ..+.++++|++|++++|
T Consensus 12 ~~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC
Confidence 36789999999888764 236899999999999988865 899999999999999 676665 56889999999999999
Q ss_pred CCCccch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468 95 GITTLPI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV 146 (396)
Q Consensus 95 ~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~ 146 (396)
.++.++. .+..+++|++|++++| .+..++...+..+++|+.|++.+|.+.-
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9997765 5888999999999998 4556666558889999999999987754
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=3.8e-13 Score=107.82 Aligned_cols=129 Identities=20% Similarity=0.284 Sum_probs=102.4
Q ss_pred CCCCCCcEEEccCCccC--ccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCc-cchhhhcCCcc
Q 044468 33 PTCPHLRALFLHSNHLG--TVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITT-LPIELKYLVNL 109 (396)
Q Consensus 33 ~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~-l~~~l~~l~~L 109 (396)
...++|+.|++++|.+. .+|.. +..+++|++|++++| .+..+ ..++++++|++|++++|.++. +|..+.++++|
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CCCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 34578999999999887 77765 789999999999999 77766 668889999999999999986 78778889999
Q ss_pred cEEecccccCCCCCC--cchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEE
Q 044468 110 KCLNLEYTFCLSRIP--QPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTV 176 (396)
Q Consensus 110 ~~L~l~~~~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 176 (396)
++|++++|. ...++ .. ++.+++|++|++.+|.++.. .......+..+++|+.|++
T Consensus 91 ~~L~ls~N~-i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~----------~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 91 THLNLSGNK-IKDLSTIEP-LKKLENLKSLDLFNCEVTNL----------NDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CEEECTTSC-CCSHHHHGG-GGGCTTCCEEECTTCGGGGS----------TTHHHHHHHHCTTCCEETT
T ss_pred CEEECCCCc-CCChHHHHH-HhhCCCCCEEeCcCCcccch----------HHHHHHHHHHCCCcccccC
Confidence 999999984 44443 33 88899999999999988764 0111246777888887664
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.40 E-value=4.3e-12 Score=104.80 Aligned_cols=129 Identities=21% Similarity=0.278 Sum_probs=108.4
Q ss_pred cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCcCCEEEccC
Q 044468 15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVSLQHLDLSW 93 (396)
Q Consensus 15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~ 93 (396)
..+.++++++++..+|.. ..++|+.|++++|.+..++...+..+++|++|++++| .++.++. .+.++++|++|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 357899999998888753 3479999999999998888776789999999999999 7777664 468899999999999
Q ss_pred CCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccc
Q 044468 94 TGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKV 146 (396)
Q Consensus 94 ~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~ 146 (396)
|.++.++.. +..+++|++|++++| ....++...+..+++|++|++.+|.+..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 999987765 688999999999998 4556777657889999999999998765
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=1.4e-12 Score=107.63 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=101.0
Q ss_pred CCCCCCccCCCc-cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc--c
Q 044468 3 GLTGAPRIGMWK-EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL--G 79 (396)
Q Consensus 3 ~l~~~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~--~ 79 (396)
++..++.+..+. +|+.|++++|.+..++....+++|++|++++|.+..+++..+..+++|++|++++| .++.+|. .
T Consensus 30 ~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~ 108 (176)
T 1a9n_A 30 KIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDP 108 (176)
T ss_dssp CCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGG
T ss_pred CCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHh
Confidence 455666676665 99999999999999855588999999999999999888775799999999999999 7888876 7
Q ss_pred ccCCCcCCEEEccCCCCCccchh----hhcCCcccEEeccccc
Q 044468 80 ILNLVSLQHLDLSWTGITTLPIE----LKYLVNLKCLNLEYTF 118 (396)
Q Consensus 80 l~~l~~L~~L~l~~~~l~~l~~~----l~~l~~L~~L~l~~~~ 118 (396)
+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 109 l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 109 LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 88999999999999999988875 8899999999999873
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=4.9e-13 Score=130.50 Aligned_cols=124 Identities=19% Similarity=0.156 Sum_probs=99.9
Q ss_pred CCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEEeccc
Q 044468 37 HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCLNLEY 116 (396)
Q Consensus 37 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~ 116 (396)
.|+.|++++|.+..+|. +..+++|++|++++| .++.+|..++++++|++|++++|.++.+| .++++++|++|++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 58899999999988875 889999999999999 77788888999999999999999999888 788999999999999
Q ss_pred ccCCCCC-CcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEE
Q 044468 117 TFCLSRI-PQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLT 175 (396)
Q Consensus 117 ~~~~~~~-~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 175 (396)
|.+.... |.. ++.+++|+.|++++|.+.+. .+.....+..+++|+.|+
T Consensus 518 N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~----------~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 NRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQE----------EGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCSSSTTGG-GGGCTTCCEEECTTSGGGGS----------SSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCcHH-HhcCCCCCEEEecCCcCCCC----------ccHHHHHHHHCcccCccC
Confidence 8554443 666 88999999999999988763 111223344567777664
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=2.2e-12 Score=129.73 Aligned_cols=111 Identities=28% Similarity=0.265 Sum_probs=100.3
Q ss_pred CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEE
Q 044468 33 PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCL 112 (396)
Q Consensus 33 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L 112 (396)
..++.|+.|++++|.+..++.. +..+++|++|++++| .++.+|..++++++|++|+|++|.++.+|..++++++|++|
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred ccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 6789999999999999999888 669999999999999 77789988999999999999999999999999999999999
Q ss_pred ecccccCCCCCCcchhcCCCcccEEEeeccCccch
Q 044468 113 NLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVE 147 (396)
Q Consensus 113 ~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~ 147 (396)
++++| .+..+|.. ++.+++|++|++++|.+.+.
T Consensus 299 ~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 299 YFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp ECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCSH
T ss_pred ECCCC-CCCccChh-hhcCCCccEEeCCCCccCCC
Confidence 99998 55688887 99999999999999998764
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.33 E-value=1.1e-11 Score=102.40 Aligned_cols=120 Identities=25% Similarity=0.354 Sum_probs=100.6
Q ss_pred CCCCCCCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL- 78 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~- 78 (396)
.++..+|. ...+++++|++++|.+..++.. ..+++|++|++++|.+..++...+..+++|++|++++| .++.+|.
T Consensus 17 ~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 94 (177)
T 2o6r_A 17 KGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNG 94 (177)
T ss_dssp SCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHH
Confidence 34566652 3357899999999999987654 78999999999999999888776799999999999999 7776664
Q ss_pred cccCCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCCCC
Q 044468 79 GILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRI 123 (396)
Q Consensus 79 ~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~ 123 (396)
.+.++++|++|++++|.++.+|.. +..+++|++|++++|.+....
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 95 VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 468899999999999999988876 578999999999998655543
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.32 E-value=5.8e-12 Score=122.94 Aligned_cols=122 Identities=21% Similarity=0.170 Sum_probs=106.5
Q ss_pred cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCC
Q 044468 15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWT 94 (396)
Q Consensus 15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~ 94 (396)
.|+.|++++|.++.+|....+++|+.|++++|.+..+|.. +..+++|++|++++| .++.+| .++++++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 5889999999999998778899999999999999999887 899999999999999 788888 7999999999999999
Q ss_pred CCCcc--chhhhcCCcccEEecccccCCCCCCc--chhcCCCcccEEEe
Q 044468 95 GITTL--PIELKYLVNLKCLNLEYTFCLSRIPQ--PVISDLKMLRALRM 139 (396)
Q Consensus 95 ~l~~l--~~~l~~l~~L~~L~l~~~~~~~~~~~--~~i~~l~~L~~L~l 139 (396)
.++.+ |..+..+++|++|++++|.+.+..+. .++..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99977 88999999999999999965544332 22445889998853
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=4.6e-12 Score=106.05 Aligned_cols=126 Identities=16% Similarity=0.193 Sum_probs=103.4
Q ss_pred cEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc--cccCCCcCCEEEccCCCCCcc-chhhhcCCcccEEecc
Q 044468 39 RALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL--GILNLVSLQHLDLSWTGITTL-PIELKYLVNLKCLNLE 115 (396)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~--~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~ 115 (396)
++++++++.+.++|.. + ..++++|++++| .++.++. .++++++|++|++++|.++.+ |..+.++++|++|+++
T Consensus 11 ~~l~~s~~~l~~ip~~-~--~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-I--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccC-C--CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 7899999999988875 3 238999999999 7777765 388999999999999999966 6678999999999999
Q ss_pred cccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccc
Q 044468 116 YTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFG 182 (396)
Q Consensus 116 ~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 182 (396)
+|.+ ..++...+..+++|++|++++|.+.+. ....+..+++|+.|++.++...
T Consensus 87 ~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKI-KEISNKMFLGLHQLKTLNLYDNQISCV-------------MPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCC-CEECSSSSTTCTTCCEEECCSSCCCEE-------------CTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcC-CccCHHHhcCCCCCCEEECCCCcCCee-------------CHHHhhcCCCCCEEEeCCCCcc
Confidence 9854 444444488999999999999998874 4567778888888888877664
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.2e-11 Score=103.48 Aligned_cols=117 Identities=28% Similarity=0.383 Sum_probs=100.3
Q ss_pred CCCCCCCccCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-cc
Q 044468 2 AGLTGAPRIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LG 79 (396)
Q Consensus 2 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~ 79 (396)
.+++.+|. .-.+++++|++++|.+..++.. ..+++|+.|++++|.+..++...|..+++|++|++++| .+..++ ..
T Consensus 20 ~~l~~ip~-~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~ 97 (193)
T 2wfh_A 20 KGLKVLPK-GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRT 97 (193)
T ss_dssp SCCSSCCS-CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTT
T ss_pred CCCCcCCC-CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHH
Confidence 35666663 2246899999999999998866 89999999999999999888776999999999999999 777665 46
Q ss_pred ccCCCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCC
Q 044468 80 ILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCL 120 (396)
Q Consensus 80 l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~ 120 (396)
+.++++|++|++++|.++.+|.. +..+++|++|++.+|.+.
T Consensus 98 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88999999999999999988875 788999999999998543
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=5.3e-14 Score=118.62 Aligned_cols=109 Identities=21% Similarity=0.249 Sum_probs=72.7
Q ss_pred CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCEEEccCCCCCccchhhhcCCcccEE
Q 044468 33 PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQHLDLSWTGITTLPIELKYLVNLKCL 112 (396)
Q Consensus 33 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L 112 (396)
..+++|++|++++|.+..+| . +..+++|++|++++| .++.+|..+..+++|++|++++|.++.+| .+.++++|++|
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred hcCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 56677777777777776666 3 677777777777777 56666665666677777777777777665 46667777777
Q ss_pred ecccccCCCCCCc-chhcCCCcccEEEeeccCccc
Q 044468 113 NLEYTFCLSRIPQ-PVISDLKMLRALRMFECGFKV 146 (396)
Q Consensus 113 ~l~~~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~ 146 (396)
++++|. ...++. ..+..+++|++|++.+|.+..
T Consensus 121 ~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 121 YMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred ECCCCc-CCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 777763 333332 226667777777777776543
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=6.1e-13 Score=133.82 Aligned_cols=116 Identities=23% Similarity=0.217 Sum_probs=103.6
Q ss_pred ccCCCccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCC
Q 044468 9 RIGMWKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQ 87 (396)
Q Consensus 9 ~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~ 87 (396)
.+..++.|+.|++++|.+..++.. ..+++|++|++++|.+..+|.. +..+++|++|++++| .++.+|..++++++|+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELGSCFQLK 296 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGGGGTTCS
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCC-cCCccChhhcCCCCCC
Confidence 467788999999999999988876 8899999999999999999987 899999999999999 7889999999999999
Q ss_pred EEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcc
Q 044468 88 HLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQP 126 (396)
Q Consensus 88 ~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~ 126 (396)
+|+|++|.++.+|..++++++|++|++++|.+.+.+|..
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 999999999999999999999999999999666555543
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=1.5e-11 Score=112.10 Aligned_cols=251 Identities=14% Similarity=0.066 Sum_probs=149.7
Q ss_pred CccccEEEccccccccccCC-CCCCCCcEEEccCCccCccChHHHhc--------CccccEEEeecCCCCcccc-ccccC
Q 044468 13 WKEITRMSLMQNAIQNLTET-PTCPHLRALFLHSNHLGTVSNNFFHS--------MASLRVLIFLYNRSLENLP-LGILN 82 (396)
Q Consensus 13 ~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~l~-~~l~~ 82 (396)
+++|++|++++|.+..+... ..++.++.+....+ .++..+|.. |++|+.+++... ++.++ ..+.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~~--i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSEK--IKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCTT--CCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCcc--ccchhHHHhhc
Confidence 67799999999988832221 22333444444444 445555677 888888888773 44454 45777
Q ss_pred CCcCCEEEccCCCCCccchh-hhcCCcccEEeccccc---CCCCCCcchhcCCCccc-EEEeeccCccchhcc-------
Q 044468 83 LVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTF---CLSRIPQPVISDLKMLR-ALRMFECGFKVEQEA------- 150 (396)
Q Consensus 83 l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~---~~~~~~~~~i~~l~~L~-~L~l~~~~~~~~~~~------- 150 (396)
+++|+.+++.++.+..++.. +..+.++..+...... ....+....+..+.+|+ .+.+...........
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 88888888888777655543 5566666666554421 01112211133444444 222221110000000
Q ss_pred ----chhccCCchhhhHhhh-cCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhcccccc
Q 044468 151 ----DRILFGDSEVLVEELL-ALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLW 225 (396)
Q Consensus 151 ----~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 225 (396)
....+.........+. .+++|+.+++..+....++. ..+.+|++|+.+.+.+. +...+..++.+|++|+
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~----~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD----FTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT----TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCC
T ss_pred ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH----hhhhCCCCCCEEECCcc--cceehHHHhhCChhcc
Confidence 0000000111222222 37889999988776665543 45778888999999763 5555556789999999
Q ss_pred -ceeeeccccceeeeccccccccccccccccCcEeEEeCceeecCC--ccCCCCCccEEee
Q 044468 226 -TLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT--WLVLAPRAKVIRI 283 (396)
Q Consensus 226 -~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~l~~l~~L~~L~l 283 (396)
.+.+.. .++.++..... .|++|+++++.++.++.++ .+.++++|+.+..
T Consensus 277 ~~l~l~~-~l~~I~~~aF~--------~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 277 GTLELPA-SVTAIEFGAFM--------GCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECT-TCCEECTTTTT--------TCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEEEcc-cceEEchhhhh--------CCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999986 67766654332 7899999999888777765 4778999998864
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.27 E-value=2.5e-10 Score=106.62 Aligned_cols=258 Identities=12% Similarity=0.133 Sum_probs=173.8
Q ss_pred CccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEE
Q 044468 13 WKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHL 89 (396)
Q Consensus 13 ~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L 89 (396)
+..++.+.+.+. ++.++.. .++ +|+.+.+..+ +..+...+|..+ +|+.+.+..+ +..++ ..+.++.+|+.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCee
Confidence 456777777653 5565554 454 7888888765 777777767774 6999988863 55554 567788999999
Q ss_pred EccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCC
Q 044468 90 DLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALK 169 (396)
Q Consensus 90 ~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 169 (396)
++..+.++.++...-.+.+|+.+.+..+ ...++...+..+++|+.+.+..+ ++.+ ...++.+ .
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I-------------~~~aF~~-~ 248 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTI-------------GQEAFRE-S 248 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEE-------------CTTTTTT-C
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCc-------------ccccccc-C
Confidence 9998888888876555788999998764 55666666888999999998864 3332 2334444 5
Q ss_pred CCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCC----cccchhhhhccccccceeeeccccceeeecccccc
Q 044468 170 HLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNS----NLLSAFSFASLRHLWTLHLYFNDFEELNIDAGEVK 245 (396)
Q Consensus 170 ~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~~~~~~ 245 (396)
.|+.+.+... ...+. ...+.+|++|+.+.+.+.... .......+.+|++|+.+.+. +.++.++.....
T Consensus 249 ~L~~i~lp~~-i~~I~----~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~-- 320 (401)
T 4fdw_A 249 GITTVKLPNG-VTNIA----SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLG-- 320 (401)
T ss_dssp CCSEEEEETT-CCEEC----TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTT--
T ss_pred CccEEEeCCC-ccEEC----hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhc--
Confidence 7887777432 22222 245677888999988763221 12333468889999999988 457766654432
Q ss_pred ccccccccccCcEeEEeCceeecC--CccCCCCCccEEeeccccccceeecccccccchhccccccccc-cCcceeeccC
Q 044468 246 RIRETRGFHSLQKVYINYSKFRHA--TWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILF-GRLEYLILEG 322 (396)
Q Consensus 246 ~~~~~~~~~~L~~L~l~~~~l~~l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~ 322 (396)
.|.+|+.+.+..+ ++.+ ..+.++ +|+.+.+.++. ...+.... ...+ .+++.|.+..
T Consensus 321 ------~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~------------F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 321 ------GNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKV------------WYGFPDDITVIRVPA 379 (401)
T ss_dssp ------TCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS-CCBCCCSS------------CCCSCTTCCEEEECG
T ss_pred ------CCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC-Cccccccc------------ccCCCCCccEEEeCH
Confidence 6889999999766 4433 346677 89999998763 44443322 2334 3677887754
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=1.2e-11 Score=112.64 Aligned_cols=271 Identities=13% Similarity=0.104 Sum_probs=166.8
Q ss_pred CccccEEEccccc-cccccCC-CCCCCCcEEEccCCccC--ccChHHHhcCccccEEEeecCCCCcccc-ccccC-----
Q 044468 13 WKEITRMSLMQNA-IQNLTET-PTCPHLRALFLHSNHLG--TVSNNFFHSMASLRVLIFLYNRSLENLP-LGILN----- 82 (396)
Q Consensus 13 ~~~L~~L~l~~~~-~~~l~~~-~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~----- 82 (396)
+.++++|.+.++- -..+... ..+++|+.|++++|.+. .... ..++.++.+....+ .+| ..+.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~----~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMAN----FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTT----EECTTTTEEEETTE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccc----ccCHHHhccccccc
Confidence 4567888887651 1112222 22788888999888776 3332 23333455555555 333 34566
Q ss_pred ---CCcCCEEEccCCCCCccchh-hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCc----cchhccch--
Q 044468 83 ---LVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGF----KVEQEADR-- 152 (396)
Q Consensus 83 ---l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~----~~~~~~~~-- 152 (396)
+.+|+.+++.. .++.++.. +.++++|+.+++.++ ....++...+..+.++..+....... ..+.....
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 99999999998 88887765 889999999999987 44466666588877777766544211 00000000
Q ss_pred ---------h--ccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhcc
Q 044468 153 ---------I--LFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASL 221 (396)
Q Consensus 153 ---------~--~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 221 (396)
+ .+..............++..+.+.+.-........ ...|++|+.+++.++. ++..+..++.+|
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l----~~~~~~L~~l~L~~n~-i~~I~~~aF~~~ 249 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLI----RDYMPNLVSLDISKTN-ATTIPDFTFAQK 249 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHH----HHHCTTCCEEECTTBC-CCEECTTTTTTC
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHH----HHhcCCCeEEECCCCC-cceecHhhhhCC
Confidence 0 00000011111123456666666654332111110 0125669999998743 455555678999
Q ss_pred ccccceeeeccccceeeeccccccccccccccccCc-EeEEeCceeecC--CccCCCCCccEEeeccccccceeeccccc
Q 044468 222 RHLWTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQ-KVYINYSKFRHA--TWLVLAPRAKVIRISNCQRLQEIISMEKL 298 (396)
Q Consensus 222 ~~L~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 298 (396)
.+|+++++..+ ++.++..... .|++|+ .+.+.+ .++.+ ..+.++++|+.+++.+.. ++.+...
T Consensus 250 ~~L~~l~l~~n-i~~I~~~aF~--------~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~--- 315 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQRVFS--------NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDE--- 315 (329)
T ss_dssp TTCCEEECCTT-CCEECTTTTT--------TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC-CCEECTT---
T ss_pred CCCCEEECCcc-cceehHHHhh--------CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc-cCccchh---
Confidence 99999999865 7776654433 789999 999988 45554 357889999999997653 6666442
Q ss_pred ccchhccccccccccCcceeec
Q 044468 299 GEISAEVMDNLILFGRLEYLIL 320 (396)
Q Consensus 299 ~~~~~~~~~~~~~~~~L~~L~l 320 (396)
....+++|+.+..
T Consensus 316 ---------aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 316 ---------LFGNGVPSKLIYK 328 (329)
T ss_dssp ---------TTCTTCCCCEEEC
T ss_pred ---------hhcCCcchhhhcc
Confidence 4456888888764
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.23 E-value=1.6e-13 Score=115.70 Aligned_cols=127 Identities=26% Similarity=0.278 Sum_probs=106.5
Q ss_pred ccCCCccccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCCcCCE
Q 044468 9 RIGMWKEITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLVSLQH 88 (396)
Q Consensus 9 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~ 88 (396)
.+..+++|++|++++|.+..++....+++|+.|++++|.+..+|.. +..+++|++|++++| .++.+| .+..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 5778899999999999999988338899999999999999988876 788899999999999 777776 5888999999
Q ss_pred EEccCCCCCccch--hhhcCCcccEEecccccCCCCCCc---------chhcCCCcccEEE
Q 044468 89 LDLSWTGITTLPI--ELKYLVNLKCLNLEYTFCLSRIPQ---------PVISDLKMLRALR 138 (396)
Q Consensus 89 L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~---------~~i~~l~~L~~L~ 138 (396)
|++++|.++.++. .+..+++|++|++++|.....+|. .++..+++|+.|+
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999999997765 688999999999999855443322 2356677777775
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.23 E-value=1.3e-09 Score=101.75 Aligned_cols=258 Identities=13% Similarity=0.152 Sum_probs=174.0
Q ss_pred CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCCCCCccch-hhhcCCccc
Q 044468 33 PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWTGITTLPI-ELKYLVNLK 110 (396)
Q Consensus 33 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~ 110 (396)
..+..++.+.+... +..++..+|..+ +|+.+.+..+ +..++ ..+.+ .+|+.+.+.. .++.++. .+.++++|+
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCC
Confidence 44677888887654 667777768775 7999998876 55554 34555 4799999986 5666654 478899999
Q ss_pred EEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhc
Q 044468 111 CLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNY 190 (396)
Q Consensus 111 ~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 190 (396)
.+++..+ ....++...+. +++|+.+.+..+ +..+ ...++.++++|+.+.+..+ ...+..
T Consensus 184 ~l~l~~n-~l~~I~~~aF~-~~~L~~l~lp~~-l~~I-------------~~~aF~~~~~L~~l~l~~~-l~~I~~---- 242 (401)
T 4fdw_A 184 KADLSKT-KITKLPASTFV-YAGIEEVLLPVT-LKEI-------------GSQAFLKTSQLKTIEIPEN-VSTIGQ---- 242 (401)
T ss_dssp EEECTTS-CCSEECTTTTT-TCCCSEEECCTT-CCEE-------------CTTTTTTCTTCCCEECCTT-CCEECT----
T ss_pred eeecCCC-cceEechhhEe-ecccCEEEeCCc-hhee-------------hhhHhhCCCCCCEEecCCC-ccCccc----
Confidence 9999886 56667776455 689999999854 4442 4567788888888887643 222221
Q ss_pred cCCCCCcccceEEecccCCCcccchhhhhccccccceeeeccccc-----eeeeccccccccccccccccCcEeEEeCce
Q 044468 191 CNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFNDFE-----ELNIDAGEVKRIRETRGFHSLQKVYINYSK 265 (396)
Q Consensus 191 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~-----~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 265 (396)
..+.+ .+|+.+.+.+ .++.....++.+|++|+.+.+..+.+. .+..... ..|++|+.+.+.++
T Consensus 243 ~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF--------~~c~~L~~l~l~~~- 310 (401)
T 4fdw_A 243 EAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL--------EGCPKLARFEIPES- 310 (401)
T ss_dssp TTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT--------TTCTTCCEECCCTT-
T ss_pred ccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh--------hCCccCCeEEeCCc-
Confidence 22334 4589998853 455555556889999999999855443 3333222 17899999999865
Q ss_pred eecC--CccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCC-CCCC-CCcce
Q 044468 266 FRHA--TWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSS-YLPF-PRLKE 341 (396)
Q Consensus 266 l~~l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~-~~L~~ 341 (396)
++.+ ..+.++++|+.+.|... ++.+... ....+ +|+.+.+.+. ....+... ...+ .+++.
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~------------aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~ 374 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIPAN--VTQINFS------------AFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITV 374 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEECTT--CCEECTT------------SSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCE
T ss_pred eEEEhhhhhcCCCCccEEEECcc--ccEEcHH------------hCCCC-CCCEEEEcCC-CCcccccccccCCCCCccE
Confidence 4443 35777999999999643 5665331 34557 9999999886 44444433 2224 36677
Q ss_pred EEec
Q 044468 342 ICVW 345 (396)
Q Consensus 342 L~i~ 345 (396)
|.+-
T Consensus 375 l~vp 378 (401)
T 4fdw_A 375 IRVP 378 (401)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7664
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.18 E-value=1.2e-10 Score=95.67 Aligned_cols=102 Identities=23% Similarity=0.316 Sum_probs=49.0
Q ss_pred cEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccCCCCCccchh-hhcCCcccEEeccc
Q 044468 39 RALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEY 116 (396)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~ 116 (396)
+.++++++.+..+|.. + .++|++|++++| .+..+ |..+.++++|++|++++|.++.+|.. +.++++|++|++++
T Consensus 15 ~~l~~~~n~l~~iP~~-~--~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG-I--PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSC-C--CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCC-c--CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 3444555544444443 1 144555555555 33333 33444555555555555555544443 24555555555555
Q ss_pred ccCCCCCCcchhcCCCcccEEEeeccCcc
Q 044468 117 TFCLSRIPQPVISDLKMLRALRMFECGFK 145 (396)
Q Consensus 117 ~~~~~~~~~~~i~~l~~L~~L~l~~~~~~ 145 (396)
| .+..++...+..+++|++|++.+|.+.
T Consensus 91 N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 N-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred C-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 4 233344333555555555555555544
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.17 E-value=1.6e-10 Score=94.59 Aligned_cols=102 Identities=25% Similarity=0.341 Sum_probs=49.1
Q ss_pred cEEEccCCccCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccCCCCCccchh-hhcCCcccEEeccc
Q 044468 39 RALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSWTGITTLPIE-LKYLVNLKCLNLEY 116 (396)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~ 116 (396)
+.++++++.+..+|.. + .++|++|++++| .+..+ |..+.++++|++|++++|.++.+|.. +.++++|++|++++
T Consensus 12 ~~l~~s~n~l~~ip~~-~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLASVPTG-I--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCcc-C--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3444444444444433 1 244555555555 33333 33344555555555555555544443 34555555555555
Q ss_pred ccCCCCCCcchhcCCCcccEEEeeccCcc
Q 044468 117 TFCLSRIPQPVISDLKMLRALRMFECGFK 145 (396)
Q Consensus 117 ~~~~~~~~~~~i~~l~~L~~L~l~~~~~~ 145 (396)
| .+..++...+..+++|++|++.+|.+.
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 N-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 4 233333333555555555555555544
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.13 E-value=2.6e-10 Score=93.29 Aligned_cols=105 Identities=19% Similarity=0.221 Sum_probs=87.1
Q ss_pred cccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccc-ccCCCcCCEEEccC
Q 044468 15 EITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG-ILNLVSLQHLDLSW 93 (396)
Q Consensus 15 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-l~~l~~L~~L~l~~ 93 (396)
..++++++++.+..+|... .++|+.|++++|.+..+++..+..+++|++|++++| .+..+|.. +.++++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 4678999999998887642 378999999999998886665889999999999999 77777654 57899999999999
Q ss_pred CCCCccchh-hhcCCcccEEecccccCCC
Q 044468 94 TGITTLPIE-LKYLVNLKCLNLEYTFCLS 121 (396)
Q Consensus 94 ~~l~~l~~~-l~~l~~L~~L~l~~~~~~~ 121 (396)
|.++.+|.. +.++++|++|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999988764 7889999999999985443
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=3.2e-10 Score=93.12 Aligned_cols=103 Identities=20% Similarity=0.279 Sum_probs=87.8
Q ss_pred ccEEEccccccccccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccc-ccCCCcCCEEEccCC
Q 044468 16 ITRMSLMQNAIQNLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG-ILNLVSLQHLDLSWT 94 (396)
Q Consensus 16 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-l~~l~~L~~L~l~~~ 94 (396)
-+.++++++.+..+|..- .++|+.|++++|.+..+++..+..+++|++|++++| .++.+|.. +.++++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 478999999998888752 389999999999998886665899999999999999 78877754 578999999999999
Q ss_pred CCCccchh-hhcCCcccEEecccccCC
Q 044468 95 GITTLPIE-LKYLVNLKCLNLEYTFCL 120 (396)
Q Consensus 95 ~l~~l~~~-l~~l~~L~~L~l~~~~~~ 120 (396)
.++.+|.. +.++++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 99988876 888999999999998443
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.86 E-value=1.8e-07 Score=87.20 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=21.0
Q ss_pred hhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeecc
Q 044468 103 LKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFEC 142 (396)
Q Consensus 103 l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~ 142 (396)
+.++++|+.+.+..+ ...++...+..+.+|+.+.+..+
T Consensus 158 F~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 158 FATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred hcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC
Confidence 455666666666543 23344444566666666665543
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.85 E-value=8.7e-08 Score=89.36 Aligned_cols=282 Identities=12% Similarity=0.079 Sum_probs=167.7
Q ss_pred ccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCC---------------
Q 044468 9 RIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNR--------------- 71 (396)
Q Consensus 9 ~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------------- 71 (396)
+|..|.+|+++.+..+ ++.++.. .+|.+|+.+.+..+ +..+...+|..+..|+.+.+..+-
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 5788999999999754 7777665 78999999999654 556666667777777765554320
Q ss_pred -----CCccc-cccccCCCcCCEEEccCCCCCccch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCc
Q 044468 72 -----SLENL-PLGILNLVSLQHLDLSWTGITTLPI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGF 144 (396)
Q Consensus 72 -----~~~~l-~~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~ 144 (396)
....+ ...+.++.+|+.+.+..+ +..++. .+.++.+|+.+++..+ ...++...+.++..|+.+.+..+..
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred cccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce
Confidence 01111 134567889999999765 444443 3678899999998764 4445555578888888887765432
Q ss_pred cchhccchhccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccc
Q 044468 145 KVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHL 224 (396)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 224 (396)
.- -........|+.+.+..... .+ ....+.++..++.+.+... ........+..+..+
T Consensus 221 ~i---------------~~~~~~~~~l~~i~ip~~~~-~i----~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l 278 (394)
T 4fs7_A 221 YL---------------GDFALSKTGVKNIIIPDSFT-EL----GKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGL 278 (394)
T ss_dssp EE---------------CTTTTTTCCCCEEEECTTCC-EE----CSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTC
T ss_pred Ee---------------ehhhcccCCCceEEECCCce-ec----ccccccccccceeEEcCCC--cceeecccccccccc
Confidence 21 01112234566555432211 11 1133456666777777542 222232346666777
Q ss_pred cceeeeccccceeeeccccccccccccccccCcEeEEeCceeecC--CccCCCCCccEEeeccccccceeecccccccch
Q 044468 225 WTLHLYFNDFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHA--TWLVLAPRAKVIRISNCQRLQEIISMEKLGEIS 302 (396)
Q Consensus 225 ~~L~l~~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 302 (396)
+.+......+. .... ..+.+|+.+.+..+ ++.+ ..+.++++|+.+.|.+ .++.+...
T Consensus 279 ~~~~~~~~~i~---~~~F--------~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~------- 337 (394)
T 4fs7_A 279 KKVIYGSVIVP---EKTF--------YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKR------- 337 (394)
T ss_dssp CEEEECSSEEC---TTTT--------TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTT-------
T ss_pred ceeccCceeec---cccc--------cccccccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhHH-------
Confidence 66655432211 1111 15778888887665 3332 3456678888887753 25555221
Q ss_pred hccccccccccCcceeeccCCcccccccCCC-CCCCCcceEEec
Q 044468 303 AEVMDNLILFGRLEYLILEGLQNLKSIHSSY-LPFPRLKEICVW 345 (396)
Q Consensus 303 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~i~ 345 (396)
....|.+|+.+.+... ++.+.... ..+++|+++++.
T Consensus 338 -----aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 338 -----SFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp -----TTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred -----hccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEEC
Confidence 3456778888877542 55554432 246778888774
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.83 E-value=6.1e-10 Score=102.92 Aligned_cols=34 Identities=26% Similarity=0.163 Sum_probs=15.0
Q ss_pred CcCCEEEccCCCCCc-----cchhhhcCCcccEEecccc
Q 044468 84 VSLQHLDLSWTGITT-----LPIELKYLVNLKCLNLEYT 117 (396)
Q Consensus 84 ~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~ 117 (396)
++|++|++++|.++. ++..+..+++|++|++++|
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC
Confidence 445555555544431 2223344444555555444
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.82 E-value=1.4e-08 Score=93.00 Aligned_cols=98 Identities=19% Similarity=0.281 Sum_probs=46.6
Q ss_pred EEcccc-ccccccCCCCCCCCcEEEccC-CccCccChHHHhcCccccEEEeecCCCCcccc-ccccCCCcCCEEEccCCC
Q 044468 19 MSLMQN-AIQNLTETPTCPHLRALFLHS-NHLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGILNLVSLQHLDLSWTG 95 (396)
Q Consensus 19 L~l~~~-~~~~l~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~ 95 (396)
++.+++ ++..+|....+++|+.|++++ |.+..+++..|..+++|++|++++| .+..++ ..+.++++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc
Confidence 344444 454444434444555555553 5555444433555555555555555 333332 234455555555555555
Q ss_pred CCccchhhhcCCcccEEecccc
Q 044468 96 ITTLPIELKYLVNLKCLNLEYT 117 (396)
Q Consensus 96 l~~l~~~l~~l~~L~~L~l~~~ 117 (396)
++.+|........|++|++.+|
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSS
T ss_pred cceeCHHHcccCCceEEEeeCC
Confidence 5544443222222555555544
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.81 E-value=1.5e-08 Score=92.89 Aligned_cols=94 Identities=24% Similarity=0.258 Sum_probs=81.4
Q ss_pred CCCCCCccCCCccccEEEccc-cccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCcccccc
Q 044468 3 GLTGAPRIGMWKEITRMSLMQ-NAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLG 79 (396)
Q Consensus 3 ~l~~~~~~~~~~~L~~L~l~~-~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~ 79 (396)
+++.+|.+..+++|++|++++ |.+..++.. ..+++|+.|++++|.+..+++..|..+++|++|++++| .+..+|..
T Consensus 20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 98 (347)
T 2ifg_A 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWK 98 (347)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCST
T ss_pred CCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHH
Confidence 678888888899999999996 999997753 89999999999999999888776899999999999999 88888765
Q ss_pred ccCCCcCCEEEccCCCCC
Q 044468 80 ILNLVSLQHLDLSWTGIT 97 (396)
Q Consensus 80 l~~l~~L~~L~l~~~~l~ 97 (396)
+.....|++|++.+|.+.
T Consensus 99 ~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp TTCSCCCCEEECCSSCCC
T ss_pred HcccCCceEEEeeCCCcc
Confidence 444444999999999887
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.81 E-value=1.4e-09 Score=100.52 Aligned_cols=132 Identities=23% Similarity=0.285 Sum_probs=97.9
Q ss_pred ccccEEEcccccccc--ccCC-CCCCCCcEEEccCCccCccChHHH-----hcCccccEEEeecCCCCcc-----ccccc
Q 044468 14 KEITRMSLMQNAIQN--LTET-PTCPHLRALFLHSNHLGTVSNNFF-----HSMASLRVLIFLYNRSLEN-----LPLGI 80 (396)
Q Consensus 14 ~~L~~L~l~~~~~~~--l~~~-~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~-----l~~~l 80 (396)
++|++|++++|.+.. +... ..+++|+.|++++|.+.+.....+ ...++|++|++++| .++. ++..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHH
Confidence 688999999998865 3333 456789999999998864332212 35688999999999 6653 44455
Q ss_pred cCCCcCCEEEccCCCCCc-----cchhhhcCCcccEEecccccCCCC----CCcchhcCCCcccEEEeeccCccch
Q 044468 81 LNLVSLQHLDLSWTGITT-----LPIELKYLVNLKCLNLEYTFCLSR----IPQPVISDLKMLRALRMFECGFKVE 147 (396)
Q Consensus 81 ~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~~~~~~----~~~~~i~~l~~L~~L~l~~~~~~~~ 147 (396)
...++|++|++++|.++. ++..+...++|++|++++|.+... ++.. +...++|++|++++|.+...
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~-L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA-AREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH-HHHCSSCCEEECTTSSCCHH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH-HHhCCCCCEEeccCCCCCHH
Confidence 678999999999999873 355677888999999999854432 2222 45678999999999988763
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.80 E-value=2.8e-07 Score=85.86 Aligned_cols=127 Identities=12% Similarity=0.208 Sum_probs=85.9
Q ss_pred ccCCCc-cccEEEccccccccccCC--CCCCCCcEEEccCC---ccCccChHHHhcCccccEEEeecCCCCcccc-cccc
Q 044468 9 RIGMWK-EITRMSLMQNAIQNLTET--PTCPHLRALFLHSN---HLGTVSNNFFHSMASLRVLIFLYNRSLENLP-LGIL 81 (396)
Q Consensus 9 ~~~~~~-~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~l~ 81 (396)
+|.+++ .|+++.+..+ ++.+... .+|.+|+.+.+..+ .+..+...+|..+..|+.+.+..+ +..++ ..+.
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhh
Confidence 466674 5899999764 7777665 78999999998766 356777777888888888776654 44443 4566
Q ss_pred CCCcCCEEEccCCCCCccch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeecc
Q 044468 82 NLVSLQHLDLSWTGITTLPI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFEC 142 (396)
Q Consensus 82 ~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~ 142 (396)
++.+|+.+.+... +..++. .+..+.+|+.+.+..+ ...+....+. ..+|+.+.+...
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~~ 192 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPAK 192 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECTT
T ss_pred hhcccccccccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEECCc
Confidence 7888998888653 343333 3667788888887653 3444443243 356777777654
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.71 E-value=1.6e-06 Score=80.70 Aligned_cols=113 Identities=10% Similarity=0.165 Sum_probs=78.9
Q ss_pred cccccCC--CCCC-CCcEEEccCCccCccChHHHhcCccccEEEeecC--CCCcccc-ccccCCCcCCEEEccCCCCCcc
Q 044468 26 IQNLTET--PTCP-HLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYN--RSLENLP-LGILNLVSLQHLDLSWTGITTL 99 (396)
Q Consensus 26 ~~~l~~~--~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~l~-~~l~~l~~L~~L~l~~~~l~~l 99 (396)
++.+... .+++ .|+.+.+... +..+...+|..|.+|+.+.+..+ ..++.+. ..+.++.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 4556554 4564 5898888654 67777777999999999998765 1244554 45667788888776543 5555
Q ss_pred ch-hhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeecc
Q 044468 100 PI-ELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFEC 142 (396)
Q Consensus 100 ~~-~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~ 142 (396)
+. .+..+.+|+.+.+... ...++...+..+.+|+.+.+..+
T Consensus 129 ~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 44 3678889999998753 44555555788899999888754
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.58 E-value=1.8e-08 Score=81.62 Aligned_cols=90 Identities=11% Similarity=-0.016 Sum_probs=54.7
Q ss_pred ccceEEecccCCCcccchhhhhccccccceeee-ccccceeeeccccccccccccccccCcEeEEeCc-eeec--CCccC
Q 044468 198 NTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLY-FNDFEELNIDAGEVKRIRETRGFHSLQKVYINYS-KFRH--ATWLV 273 (396)
Q Consensus 198 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~-~~~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~--l~~l~ 273 (396)
+|+.|++++|. +++..+..+.+|++|++|+++ |..+++.++...... + . .+++|++|+|++| ++|+ +..+.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~--~-~-~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL--E-N-LQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC--H-H-HHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc--c-c-ccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 37777777765 566666666667777777777 556666554332110 0 0 1346777777777 6666 44555
Q ss_pred CCCCccEEeecccccccee
Q 044468 274 LAPRAKVIRISNCQRLQEI 292 (396)
Q Consensus 274 ~l~~L~~L~l~~~~~l~~~ 292 (396)
.+++|++|++++|+.+++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GCTTCCEEEEESCTTCCCH
T ss_pred cCCCCCEEECCCCCCCCch
Confidence 6677777777777665543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.55 E-value=2.7e-07 Score=84.59 Aligned_cols=63 Identities=24% Similarity=0.264 Sum_probs=41.0
Q ss_pred cchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeeccCccchhccchhccCCchhhhHhhh--cCCCCcEEEE
Q 044468 99 LPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGFKVEQEADRILFGDSEVLVEELL--ALKHLNLLTV 176 (396)
Q Consensus 99 l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~L~~L~l 176 (396)
+...+..+++|+.|++.++.. ..++. +. +++|++|.+..+.+.. ..+..+. .++.|+.|++
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~-l~l~~--~~-~~~L~~L~L~~~~l~~-------------~~l~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNN-LSIGK--KP-RPNLKSLEIISGGLPD-------------SVVEDILGSDLPNLEKLVL 226 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBT-CBCCS--CB-CTTCSEEEEECSBCCH-------------HHHHHHHHSBCTTCCEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCC-ceecc--cc-CCCCcEEEEecCCCCh-------------HHHHHHHHccCCCCcEEEE
Confidence 445567778888888877621 22332 32 7788888888777654 2444444 6788888887
Q ss_pred Ee
Q 044468 177 TL 178 (396)
Q Consensus 177 ~~ 178 (396)
..
T Consensus 227 ~~ 228 (362)
T 2ra8_A 227 YV 228 (362)
T ss_dssp EC
T ss_pred ec
Confidence 53
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.55 E-value=2e-08 Score=81.32 Aligned_cols=90 Identities=12% Similarity=0.048 Sum_probs=49.5
Q ss_pred cCcEeEEeCceeec--CCccCCCCCccEEeeccccccceeecccccccchhccccccccccCcceeeccCCcccccccCC
Q 044468 255 SLQKVYINYSKFRH--ATWLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLILFGRLEYLILEGLQNLKSIHSS 332 (396)
Q Consensus 255 ~L~~L~l~~~~l~~--l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 332 (396)
+|++|++++|.+++ +..+..+++|++|++++|..+++..... +......+++|++|++++|++++.....
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~--------L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER--------LSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH--------HHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH--------HHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 46666666665444 4445566777777777776655441100 0000012346777777777666542221
Q ss_pred -CCCCCCcceEEeccCccccc
Q 044468 333 -YLPFPRLKEICVWKCAELKK 352 (396)
Q Consensus 333 -~~~~~~L~~L~i~~c~~L~~ 352 (396)
...+++|++|++++|+++++
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCC
T ss_pred HHhcCCCCCEEECCCCCCCCc
Confidence 23467777777777776665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.51 E-value=2.5e-07 Score=84.77 Aligned_cols=127 Identities=15% Similarity=0.148 Sum_probs=68.5
Q ss_pred cccEEEccccccc---------cccCC-CCCCCCcEEEccCCccC----------ccChHHHhcCccccEEEeecCCCCc
Q 044468 15 EITRMSLMQNAIQ---------NLTET-PTCPHLRALFLHSNHLG----------TVSNNFFHSMASLRVLIFLYNRSLE 74 (396)
Q Consensus 15 ~L~~L~l~~~~~~---------~l~~~-~~~~~L~~L~l~~~~~~----------~~~~~~~~~l~~L~~L~l~~~~~~~ 74 (396)
.++.|.+....+. .+... ..+++|+.|.+...... .+. .++..+++|+.|.++++...
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-
Confidence 4566666654432 12222 45678888877544221 122 33677788888888776222
Q ss_pred cccccccCCCcCCEEEccCCCCC-ccchhhh--cCCcccEEecccc--cCCCC-----CCcchh--cCCCcccEEEeecc
Q 044468 75 NLPLGILNLVSLQHLDLSWTGIT-TLPIELK--YLVNLKCLNLEYT--FCLSR-----IPQPVI--SDLKMLRALRMFEC 142 (396)
Q Consensus 75 ~l~~~l~~l~~L~~L~l~~~~l~-~l~~~l~--~l~~L~~L~l~~~--~~~~~-----~~~~~i--~~l~~L~~L~l~~~ 142 (396)
.++. + .+++|++|++..+.+. .....+. .+++|++|+++.+ ..... +... + ..+++|++|++.+|
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-SCTTTCTTCCEEEEESC
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH-HhcCCCCCcCEEeCCCC
Confidence 3333 3 2677888888777665 2112232 5777888776421 11111 1111 2 24677777777776
Q ss_pred Cccc
Q 044468 143 GFKV 146 (396)
Q Consensus 143 ~~~~ 146 (396)
.+..
T Consensus 263 ~i~~ 266 (362)
T 2ra8_A 263 EEQN 266 (362)
T ss_dssp TTHH
T ss_pred CCch
Confidence 6553
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.49 E-value=3.2e-05 Score=71.38 Aligned_cols=128 Identities=11% Similarity=0.169 Sum_probs=75.7
Q ss_pred CCccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccccccCCC
Q 044468 7 APRIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPLGILNLV 84 (396)
Q Consensus 7 ~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~ 84 (396)
.|.+....+|+++.+.. +++.++.. .+|.+|+.+.+..+ +..+...+|..+ .|+.+.+..+ +..+........
T Consensus 39 ~~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~ 113 (379)
T 4h09_A 39 IPWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGT 113 (379)
T ss_dssp STTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTC
T ss_pred ccccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccC
Confidence 35566667888888864 36676665 77888888888654 666776667776 5776666543 444443222334
Q ss_pred cCCEEEccCCCCCccchhhhcCCcccEEecccccCCCCCCcchhcCCCcccEEEeecc
Q 044468 85 SLQHLDLSWTGITTLPIELKYLVNLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFEC 142 (396)
Q Consensus 85 ~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~ 142 (396)
+|+.+.+..+ +..+....-...+|+.+.+..+ ...+....+..+.+++.+.+...
T Consensus 114 ~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 114 DLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTT
T ss_pred CcccccCCCc-cccccccccccceeeeeeccce--eeccccchhcccccccccccccc
Confidence 7888888654 3333322222234555555442 23333333666777777766654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=1e-06 Score=72.78 Aligned_cols=111 Identities=12% Similarity=0.043 Sum_probs=79.8
Q ss_pred CCCCCCcEEEccCC-ccCc-----cChHHHhcCccccEEEeecCCCCcc-----ccccccCCCcCCEEEccCCCCCc---
Q 044468 33 PTCPHLRALFLHSN-HLGT-----VSNNFFHSMASLRVLIFLYNRSLEN-----LPLGILNLVSLQHLDLSWTGITT--- 98 (396)
Q Consensus 33 ~~~~~L~~L~l~~~-~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~-----l~~~l~~l~~L~~L~l~~~~l~~--- 98 (396)
...+.|+.|++++| .+.. +... +...++|++|++++| .++. +...+...++|++|++++|.++.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 67888999999988 7753 2333 667788999999998 5552 23344556789999999998873
Q ss_pred --cchhhhcCCcccEEec--ccccCCCC----CCcchhcCCCcccEEEeeccCccc
Q 044468 99 --LPIELKYLVNLKCLNL--EYTFCLSR----IPQPVISDLKMLRALRMFECGFKV 146 (396)
Q Consensus 99 --l~~~l~~l~~L~~L~l--~~~~~~~~----~~~~~i~~l~~L~~L~l~~~~~~~ 146 (396)
+...+...++|++|++ ++|.+... +... +...++|++|++.+|.+..
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCCCCCh
Confidence 4566777888999999 66744332 2222 5566889999999987754
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.19 E-value=0.00023 Score=65.62 Aligned_cols=260 Identities=13% Similarity=0.089 Sum_probs=136.8
Q ss_pred ccCCCccccEEEccccccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecCCCCccccc-cccCCCc
Q 044468 9 RIGMWKEITRMSLMQNAIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYNRSLENLPL-GILNLVS 85 (396)
Q Consensus 9 ~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~ 85 (396)
+|..|.+|+++.+..+ ++.+... .++ +|+.+.+..+ +..+...+|..+ +|+.+.+..+ +..+.. .+.+ .+
T Consensus 64 aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~--~~~i~~~~F~~-~~ 136 (379)
T 4h09_A 64 NFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA--TTEIGNYIFYN-SS 136 (379)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CC
T ss_pred HhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCc--ccccccccccc-ce
Confidence 5888999999999754 7777665 556 6777776543 566666656654 7999998765 333332 2333 35
Q ss_pred CCEEEccCCCCCccc-hhhhcCCcccEEecccccCCCC------------CCcchhcCCCcccEEEeeccCccchhccch
Q 044468 86 LQHLDLSWTGITTLP-IELKYLVNLKCLNLEYTFCLSR------------IPQPVISDLKMLRALRMFECGFKVEQEADR 152 (396)
Q Consensus 86 L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~------------~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 152 (396)
|+.+.+..+ ++.+. ..+..+.+++.+.+........ .... +.....+..+.+......
T Consensus 137 l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------- 207 (379)
T 4h09_A 137 VKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES-YPAAKTGTEFTIPSTVKT------- 207 (379)
T ss_dssp CCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE-CCTTCCCSEEECCTTCCE-------
T ss_pred eeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecc-ccccccccccccccceeE-------
Confidence 666665443 33332 2345667777766654311110 0011 222333333333322111
Q ss_pred hccCCchhhhHhhhcCCCCcEEEEEecccchhhhhhhccCCCCCcccceEEecccCCCcccchhhhhccccccceeeecc
Q 044468 153 ILFGDSEVLVEELLALKHLNLLTVTLQIFGALQRLLNYCNSSRSINTQSLCLRHLNNSNLLSAFSFASLRHLWTLHLYFN 232 (396)
Q Consensus 153 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 232 (396)
.....+.....|+...+...-. .+. ...+.++..|+.+.+.. .++.....++.++.+|+.+.+. .
T Consensus 208 -------i~~~~f~~~~~l~~i~~~~~~~-~i~----~~~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~-~ 272 (379)
T 4h09_A 208 -------VTAYGFSYGKNLKKITITSGVT-TLG----DGAFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFY-A 272 (379)
T ss_dssp -------ECTTTTTTCSSCSEEECCTTCC-EEC----TTTTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEEC-C
T ss_pred -------Eeecccccccccceeeecccee-EEc----cccccCCccceEEEcCC--CccEeCccccceeehhcccccc-c
Confidence 1223344445555444322111 110 12344556677776643 2333333456667777777765 3
Q ss_pred ccceeeeccccccccccccccccCcEeEEeCceeecCC--ccCCCCCccEEeeccccccceeecccccccchhccccccc
Q 044468 233 DFEELNIDAGEVKRIRETRGFHSLQKVYINYSKFRHAT--WLVLAPRAKVIRISNCQRLQEIISMEKLGEISAEVMDNLI 310 (396)
Q Consensus 233 ~i~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 310 (396)
.++.++..... .|.+|+++.+.++.++.+. .+.++++|+.+.|.. .++.+... ...
T Consensus 273 ~i~~i~~~aF~--------~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~------------aF~ 330 (379)
T 4h09_A 273 KVKTVPYLLCS--------GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVY------------AFK 330 (379)
T ss_dssp CCSEECTTTTT--------TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTT------------TTT
T ss_pred cceeccccccc--------cccccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHH------------Hhh
Confidence 34444332221 5777888877766555543 356677777777753 24444221 334
Q ss_pred cccCcceeecc
Q 044468 311 LFGRLEYLILE 321 (396)
Q Consensus 311 ~~~~L~~L~l~ 321 (396)
.|.+|+.+.+.
T Consensus 331 ~C~~L~~i~ip 341 (379)
T 4h09_A 331 NCKALSTISYP 341 (379)
T ss_dssp TCTTCCCCCCC
T ss_pred CCCCCCEEEEC
Confidence 56667766664
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.09 E-value=2.3e-06 Score=70.58 Aligned_cols=117 Identities=15% Similarity=0.060 Sum_probs=73.4
Q ss_pred HhcCccccEEEeecCCCCc-----cccccccCCCcCCEEEccCCCCC-----ccchhhhcCCcccEEecccccCCCC---
Q 044468 56 FHSMASLRVLIFLYNRSLE-----NLPLGILNLVSLQHLDLSWTGIT-----TLPIELKYLVNLKCLNLEYTFCLSR--- 122 (396)
Q Consensus 56 ~~~l~~L~~L~l~~~~~~~-----~l~~~l~~l~~L~~L~l~~~~l~-----~l~~~l~~l~~L~~L~l~~~~~~~~--- 122 (396)
+...+.|++|++++|..++ .+...+...++|++|++++|.+. .+...+...++|++|++++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 6677888888888873333 23344556678888888888876 2344556667788888888744332
Q ss_pred -CCcchhcCCCcccEEEe--eccCccchhccchhccCCchhhhHhhhcCCCCcEEEEEecccc
Q 044468 123 -IPQPVISDLKMLRALRM--FECGFKVEQEADRILFGDSEVLVEELLALKHLNLLTVTLQIFG 182 (396)
Q Consensus 123 -~~~~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 182 (396)
+... +...++|++|++ .+|.+... +.......+...+.|+.|++..+...
T Consensus 112 ~l~~~-L~~n~~L~~L~L~~~~N~i~~~---------g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEA-LQSNTSLIELRIDNQSQPLGNN---------VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHG-GGGCSSCCEEECCCCSSCCCHH---------HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHH-HHhCCCceEEEecCCCCCCCHH---------HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2233 556677888888 66766542 11123445555677777776665543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.98 E-value=2.7e-06 Score=74.08 Aligned_cols=80 Identities=20% Similarity=0.145 Sum_probs=39.9
Q ss_pred hcCccccEEEeecCCCCccc---cccccCCCcCCEEEccCCCCCccchhhhcCC--cccEEecccccCCCCCC------c
Q 044468 57 HSMASLRVLIFLYNRSLENL---PLGILNLVSLQHLDLSWTGITTLPIELKYLV--NLKCLNLEYTFCLSRIP------Q 125 (396)
Q Consensus 57 ~~l~~L~~L~l~~~~~~~~l---~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~--~L~~L~l~~~~~~~~~~------~ 125 (396)
..+++|++|++++| .+..+ |..+..+++|++|+|++|.++.+. .+..+. +|++|++.+|.....+| .
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 34556666666666 44332 233345566666666666555442 223333 56666666654443333 1
Q ss_pred chhcCCCcccEEE
Q 044468 126 PVISDLKMLRALR 138 (396)
Q Consensus 126 ~~i~~l~~L~~L~ 138 (396)
.++..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2244556666554
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.76 E-value=2.2e-05 Score=68.34 Aligned_cols=110 Identities=19% Similarity=0.098 Sum_probs=68.4
Q ss_pred HhcCccccE--EEeecCCCCcccccc----ccCCCcCCEEEccCCCCCccc---hhhhcCCcccEEecccccCCCCCCcc
Q 044468 56 FHSMASLRV--LIFLYNRSLENLPLG----ILNLVSLQHLDLSWTGITTLP---IELKYLVNLKCLNLEYTFCLSRIPQP 126 (396)
Q Consensus 56 ~~~l~~L~~--L~l~~~~~~~~l~~~----l~~l~~L~~L~l~~~~l~~l~---~~l~~l~~L~~L~l~~~~~~~~~~~~ 126 (396)
+...+.|+. ++++.| ....++.. ..++++|+.|+|++|.++.++ ..+..+++|++|++++|.+ ..+..
T Consensus 137 l~~dp~L~~~~l~l~~N-~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~~~- 213 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLN-RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSERE- 213 (267)
T ss_dssp GGGCHHHHHTTCCCCTT-SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSGGG-
T ss_pred cCCCcchhhcCccccCC-HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCchh-
Confidence 445555555 556666 33333321 246889999999999887544 5567899999999999844 33321
Q ss_pred hhcCCC--cccEEEeeccCccchhccchhccCCchhhhHhhhcCCCCcEEE
Q 044468 127 VISDLK--MLRALRMFECGFKVEQEADRILFGDSEVLVEELLALKHLNLLT 175 (396)
Q Consensus 127 ~i~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 175 (396)
+..+. +|++|.+.+|.+... +. ....-....+..+++|+.|+
T Consensus 214 -l~~l~~l~L~~L~L~~Npl~~~-----~~-~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 214 -LDKIKGLKLEELWLDGNSLCDT-----FR-DQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp -GGGGTTSCCSEEECTTSTTGGG-----CS-SHHHHHHHHHHHCTTCCEES
T ss_pred -hhhcccCCcceEEccCCcCccc-----cC-cchhHHHHHHHHCcccCeEC
Confidence 33343 899999999987641 00 00001234567777888665
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.96 E-value=0.0083 Score=49.26 Aligned_cols=16 Identities=6% Similarity=0.038 Sum_probs=7.7
Q ss_pred hHhhhcCCCCcEEEEE
Q 044468 162 VEELLALKHLNLLTVT 177 (396)
Q Consensus 162 ~~~l~~l~~L~~L~l~ 177 (396)
...+..-+.|..|++.
T Consensus 150 a~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 150 MMAIEENESLLRVGIS 165 (197)
T ss_dssp HHHHHHCSSCCEEECC
T ss_pred HHHHHhCCCcCeEecc
Confidence 3344444555555544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.93 E-value=0.012 Score=48.20 Aligned_cols=109 Identities=10% Similarity=0.031 Sum_probs=74.3
Q ss_pred CCCCCCcEEEccCC-ccCc-----cChHHHhcCccccEEEeecCCCCc-----cccccccCCCcCCEEEccCCCCC----
Q 044468 33 PTCPHLRALFLHSN-HLGT-----VSNNFFHSMASLRVLIFLYNRSLE-----NLPLGILNLVSLQHLDLSWTGIT---- 97 (396)
Q Consensus 33 ~~~~~L~~L~l~~~-~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~-----~l~~~l~~l~~L~~L~l~~~~l~---- 97 (396)
.+-+.|+.|+++++ .+.+ +... +..-..|+.|++++| .++ .+...+..-..|++|+|++|.++
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~a-L~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEA-ACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHH-HTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHH-HhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 56778999999885 6642 3233 666788999999999 665 22233445578999999999887
Q ss_pred -ccchhhhcCCcccEEecccccC--CCC-----CCcchhcCCCcccEEEeeccCc
Q 044468 98 -TLPIELKYLVNLKCLNLEYTFC--LSR-----IPQPVISDLKMLRALRMFECGF 144 (396)
Q Consensus 98 -~l~~~l~~l~~L~~L~l~~~~~--~~~-----~~~~~i~~l~~L~~L~l~~~~~ 144 (396)
.+-..+..-+.|++|+++++.. .+. +... +..-+.|+.|++..+..
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a-L~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH-HHhCCCcCeEeccCCCc
Confidence 3444566667799999986521 121 2222 45567899999886653
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.38 E-value=0.028 Score=42.80 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=30.7
Q ss_pred EEEccccccc--cccCCCCCCCCcEEEccCCccCccChHHHhcCccccEEEeecC
Q 044468 18 RMSLMQNAIQ--NLTETPTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYN 70 (396)
Q Consensus 18 ~L~l~~~~~~--~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 70 (396)
+++.++++++ .+|.. --++|+.|++++|.+..++.+.|..+++|++|++++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4555556555 45532 1224666666666666666665666666666666666
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.33 E-value=0.036 Score=42.17 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=18.2
Q ss_pred cccEEecccccCCCCCCcchhcCCCcccEEEeeccCc
Q 044468 108 NLKCLNLEYTFCLSRIPQPVISDLKMLRALRMFECGF 144 (396)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~i~~l~~L~~L~l~~~~~ 144 (396)
+|++|++++| .+..++.+++..+++|+.|++.+|.+
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 3555555554 34444444455555555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=56.23 E-value=16 Score=25.84 Aligned_cols=45 Identities=16% Similarity=0.350 Sum_probs=23.3
Q ss_pred ccccccCC--CCCCCCcEEEccCCccCccChHHHhcCccccEEEeecC
Q 044468 25 AIQNLTET--PTCPHLRALFLHSNHLGTVSNNFFHSMASLRVLIFLYN 70 (396)
Q Consensus 25 ~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 70 (396)
.++.+... .+|..|+.+.+-.+ +..+...+|..|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34444333 45666666655443 33444444666666666665544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.20 E-value=27 Score=24.59 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=22.6
Q ss_pred cCccChHHHhcCccccEEEeecCCCCccc-cccccCCCcCCEEEccC
Q 044468 48 LGTVSNNFFHSMASLRVLIFLYNRSLENL-PLGILNLVSLQHLDLSW 93 (396)
Q Consensus 48 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~ 93 (396)
+..+..+.|..|..|+.+.+-.+ ++.+ ...|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 34454455666666666666554 2322 23445555555555543
Done!