BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044471
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 151/371 (40%), Gaps = 63/371 (16%)
Query: 78 TYDP--FVVGLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFD 135
TY+P ++ Y+ ++ +G+PP+ F V DTGS LWV C TS + F+
Sbjct: 3 TYEPMAYMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSR-----FN 57
Query: 136 PSSSSTASLVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDT 195
PS SST S +N +++ QYG GS T G++ D L + +
Sbjct: 58 PSESSTYS-----------------------TNGQTFSLQYGSGSLT-GFFGYDTLTVQS 93
Query: 196 ILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSVISQLSS-QG----- 249
I FG S + G + DGI G ++SV ++ QG
Sbjct: 94 I--------QVPNQEFGLSENEPGTNFVYAQ-FDGIMGLAYPALSVDEATTAMQGMVQEG 144
Query: 250 -LTPRVFSHCLKGDS-NGGGILVLG----EIVEPNIVYSPLVPSQPHYNLNLQSISVNGQ 303
LT VFS L + GG +V G + I ++P V + ++ + ++ + GQ
Sbjct: 145 ALTSPVFSVYLSNQQGSSGGAVVFGGVDSSLYTGQIYWAP-VTQELYWQIGIEEFLIGGQ 203
Query: 304 TLSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAI 363
++ S IVDTGT+L + + L+ A T + L N
Sbjct: 204 ------ASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQA-TGAQEDEYGQFLVNCNSIQN 256
Query: 364 FPQISFNFAGGASLILNAQEYLIQQNSVGGTAVWCIGIQKIQGQT--ILGDLVLKDKIFV 421
P ++F G L Y++ N V + GQ ILGD+ L+ V
Sbjct: 257 LPSLTF-IINGVEFPLPPSSYILSNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSV 315
Query: 422 YDLAGQRIGWS 432
YDL R+G++
Sbjct: 316 YDLGNNRVGFA 326
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 86/359 (23%), Positives = 141/359 (39%), Gaps = 64/359 (17%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
YYT + LG+PP+ F V +DTGS LWV + C S L
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-------------------GSLACFLHS 55
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
D S S ++N + QYG GS + ++ DT+ G LT
Sbjct: 56 KYDHEAS---------SSYKANGTEFAIQYGTGS------LEGYISQDTLSIGDLTI--- 97
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSV-------ISQLSSQGLTPRVFSHCL 259
+ F +T + G LT + DGI G G ++SV + + L + F+ L
Sbjct: 98 PKQDFAEATSEPG-LTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYL 156
Query: 260 ---KGDSNGGGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAF 312
D+ GG G I E +I + P V + ++ + + I + + +
Sbjct: 157 GDTSKDTENGGEATFGGIDESKFKGDITWLP-VRRKAYWEVKFEGIGLGDE--------Y 207
Query: 313 STSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFA 372
+ + G +DTGT+L L + +INA + S N P + FNF
Sbjct: 208 AELESHGAAIDTGTSLITLPSGLAE-MINAEIGAKKGSTGQYTLDCNTRDNLPDLIFNF- 265
Query: 373 GGASLILNAQEYLIQQNSVGGTAVWCIGIQKIQGQ-TILGDLVLKDKIFVYDLAGQRIG 430
G + + +Y ++ + +A+ + + G I+GD L+ +YDL +G
Sbjct: 266 NGYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVG 324
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/359 (23%), Positives = 140/359 (38%), Gaps = 64/359 (17%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
YYT + LG+PP+ F V +DTGS LWV + C S L
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-------------------GSLACFLHS 55
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
D S S ++N + QYG GS + ++ DT+ G LT
Sbjct: 56 KYDHEAS---------SSYKANGTEFAIQYGTGS------LEGYISQDTLSIGDLTI--- 97
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSV-------ISQLSSQGLTPRVFSHCL 259
+ F +T + G LT + DGI G G ++SV + + L + F+ L
Sbjct: 98 PKQDFAEATSEPG-LTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYL 156
Query: 260 ---KGDSNGGGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAF 312
D+ GG G I E +I + P V + ++ + + I + + +
Sbjct: 157 GDTSKDTENGGEATFGGIDESKFKGDITWLP-VRRKAYWEVKFEGIGLGDE--------Y 207
Query: 313 STSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFA 372
+ + G +DTGT+L L + +INA + N P + FNF
Sbjct: 208 AELESHGAAIDTGTSLITLPSGLAE-MINAEIGAKKGWTGQYTLDCNTRDNLPDLIFNF- 265
Query: 373 GGASLILNAQEYLIQQNSVGGTAVWCIGIQKIQGQ-TILGDLVLKDKIFVYDLAGQRIG 430
G + + +Y ++ + +A+ + + G I+GD L+ +YDL +G
Sbjct: 266 NGYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVG 324
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/359 (23%), Positives = 140/359 (38%), Gaps = 64/359 (17%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
YYT + LG+PP+ F V +DTGS LWV + C S L
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-------------------GSLACFLHS 55
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
D S S ++N + QYG GS + ++ DT+ G LT
Sbjct: 56 KYDHEAS---------SSYKANGTEFAIQYGTGS------LEGYISQDTLSIGDLTI--- 97
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSV-------ISQLSSQGLTPRVFSHCL 259
+ F +T + G LT + DGI G G ++SV + + L + F+ L
Sbjct: 98 PKQDFAEATSEPG-LTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYL 156
Query: 260 ---KGDSNGGGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAF 312
D+ GG G I E +I + P V + ++ + + I + + +
Sbjct: 157 GDTSKDTENGGEATFGGIDESKFKGDITWLP-VRRKAYWEVKFEGIGLGDE--------Y 207
Query: 313 STSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFA 372
+ + G +DTGT+L L + +INA + N P + FNF
Sbjct: 208 AELESHGAAIDTGTSLITLPSGLAE-MINAEIGAKKGWTGQYTLDCNTRDNLPDLIFNF- 265
Query: 373 GGASLILNAQEYLIQQNSVGGTAVWCIGIQKIQGQ-TILGDLVLKDKIFVYDLAGQRIG 430
G + + +Y ++ + +A+ + + G I+GD L+ +YD+ +G
Sbjct: 266 NGYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDIGNNAVG 324
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 147/365 (40%), Gaps = 71/365 (19%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN----GCPGTSGLQIQLNFFDPSSSSTA 142
YY ++ +G+PP+ F V DTGS +WV S C+ C + FD S SS
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC-------VYHKLFDASDSS-- 70
Query: 143 SLVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLT 202
S + N T +Y G+ V+ FL D I G +T
Sbjct: 71 ---------------------SYKHNGTELTLRYSTGT------VSGFLSQDIITVGGIT 103
Query: 203 TNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFG--QQSMS----VISQLSSQG-LTPRVF 255
MFG T + L DG+ G G +Q++ + + SQG L VF
Sbjct: 104 VTQ----MFGEVT-EMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVF 158
Query: 256 SHCLKGDSNGGGILVLG---EIVEPNIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAF 312
S DS GG I++ G + E N Y L+ + + + ++ +SV TL +
Sbjct: 159 SFYYNRDSLGGQIVLGGSDPQHYEGNFHYINLIKTGV-WQIQMKGVSVGSSTLLCEDGCL 217
Query: 313 STSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFA 372
+ +VDTG + + ++ + L+ A+ + + + K N P ISF+
Sbjct: 218 A-------LVDTGASYISGSTSSIEKLMEAL--GAKKRLFDYVVKCNEGPTLPDISFHL- 267
Query: 373 GGASLILNAQEYLIQQ----NSVGGTAVWCIGIQKIQGQT-ILGDLVLKDKIFVYDLAGQ 427
GG L + +Y+ Q+ + A+ + I G T LG ++ +D
Sbjct: 268 GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNN 327
Query: 428 RIGWS 432
RIG++
Sbjct: 328 RIGFA 332
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 151/356 (42%), Gaps = 60/356 (16%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y+ + +G+P ++F V DTGS LWV C+ + N F+P SST
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----DHNQFNPDDSST----- 63
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
+ S + S T+ G +G GY DT+ G ++ T
Sbjct: 64 ----------------FEATSQELSITYGTGSMTGILGY--------DTVQVGGIS--DT 97
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMS------VISQLSSQGLTPR-VFSHCL 259
QI FG S + G DGI G S+S V L QGL + +FS L
Sbjct: 98 NQI-FGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYL 155
Query: 260 KGDSNGGGILVLGEI----VEPNIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTS 315
+ + G +++LG I ++ + P V + ++ + L SI+++G+T++ S
Sbjct: 156 SSNDDSGSVVLLGGIDSSYYTGSLNWVP-VSVEGYWQITLDSITMDGETIAC-------S 207
Query: 316 SNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGA 375
IVDTGT+L +A + + I +S + V++ + A P I F G
Sbjct: 208 GGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISC-SSIASLPDIVFTI-NGV 265
Query: 376 SLILNAQEYLIQQNSVGGTAVWCIGIQKIQGQT-ILGDLVLKDKIFVYDLAGQRIG 430
L+ Y++Q + + + + G+ ILGD+ ++ V+D A ++G
Sbjct: 266 QYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVG 321
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 152/356 (42%), Gaps = 60/356 (16%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y+ + +G+P ++F V DTGS LWV C+ + N F+P SST
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----DHNQFNPDDSST----- 107
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
+ S + S T+ G +G GY DT+ G ++ T
Sbjct: 108 ----------------FEATSQELSITYGTGSMTGILGY--------DTVQVGGIS--DT 141
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMS------VISQLSSQGLTPR-VFSHCL 259
QI FG S + G DGI G S+S V L QGL + +FS L
Sbjct: 142 NQI-FGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYL 199
Query: 260 KGDSNGGGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTS 315
+ + G +++LG I ++ + P V + ++ + L SI+++G+T+ + S
Sbjct: 200 SSNDDSGSVVLLGGIDSSYYTGSLNWVP-VSVEGYWQITLDSITMDGETI-------ACS 251
Query: 316 SNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGA 375
IVDTGT+L +A + + I +S + V++ + ++ P I F G
Sbjct: 252 GGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSL-PDIVFTI-DGV 309
Query: 376 SLILNAQEYLIQQNSVGGTAVWCIGIQKIQGQT-ILGDLVLKDKIFVYDLAGQRIG 430
L+ Y++Q + + + + G+ ILGD+ ++ V+D A ++G
Sbjct: 310 QYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVG 365
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 147/370 (39%), Gaps = 76/370 (20%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN----GCPGTSGLQIQLNFFDPSSSSTA 142
YY ++ +G+PP+ F V DTGS +WV S C+ C + FD S SS
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC-------VYHKLFDASDSS-- 70
Query: 143 SLVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLT 202
S + N T +Y G+ V+ FL D I G +T
Sbjct: 71 ---------------------SYKHNGTELTLRYSTGT------VSGFLSQDIITVGGIT 103
Query: 203 TNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFG--QQSMS----VISQLSSQG-LTPRVF 255
MFG T + L DG+ G G +Q++ + + SQG L VF
Sbjct: 104 VTQ----MFGEVT-EMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVF 158
Query: 256 SHCLKGDSNG----GGILVLG----EIVEPNIVYSPLVPSQPHYNLNLQSISVNGQTLSI 307
S DS GG +VLG + E N Y L+ + + + ++ +SV TL
Sbjct: 159 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGV-WQIQMKGVSVGSSTLLC 217
Query: 308 DPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQI 367
+ + +VDTG + + ++ + L+ A+ + + + K N P I
Sbjct: 218 EDGCLA-------LVDTGASYISGSTSSIEKLMEAL--GAKKRLFDYVVKCNEGPTLPDI 268
Query: 368 SFNFAGGASLILNAQEYLIQQ----NSVGGTAVWCIGIQKIQGQT-ILGDLVLKDKIFVY 422
SF+ GG L + +Y+ Q+ + A+ + I G T LG ++ +
Sbjct: 269 SFHL-GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEF 327
Query: 423 DLAGQRIGWS 432
D RIG++
Sbjct: 328 DRRNNRIGFA 337
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 147/370 (39%), Gaps = 76/370 (20%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN----GCPGTSGLQIQLNFFDPSSSSTA 142
YY ++ +G+PP+ F V DTGS +WV S C+ C + FD S SS
Sbjct: 63 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC-------VYHKLFDASDSS-- 113
Query: 143 SLVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLT 202
S + N T +Y G+ V+ FL D I G +T
Sbjct: 114 ---------------------SYKHNGTELTLRYSTGT------VSGFLSQDIITVGGIT 146
Query: 203 TNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFG--QQSM----SVISQLSSQG-LTPRVF 255
MFG T + L DG+ G G +Q++ + + SQG L VF
Sbjct: 147 VTQ----MFGEVT-EMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVF 201
Query: 256 SHCLKGDSNG----GGILVLG----EIVEPNIVYSPLVPSQPHYNLNLQSISVNGQTLSI 307
S DS GG +VLG + E N Y L+ + + + ++ +SV TL
Sbjct: 202 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGV-WQIQMKGVSVGSSTLLC 260
Query: 308 DPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQI 367
+ + +VDTG + + ++ + L+ A+ + + + K N P I
Sbjct: 261 EDGCLA-------LVDTGASYISGSTSSIEKLMEAL--GAKKRLFDYVVKCNEGPTLPDI 311
Query: 368 SFNFAGGASLILNAQEYLIQQ----NSVGGTAVWCIGIQKIQGQT-ILGDLVLKDKIFVY 422
SF+ GG L + +Y+ Q+ + A+ + I G T LG ++ +
Sbjct: 312 SFHL-GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEF 370
Query: 423 DLAGQRIGWS 432
D RIG++
Sbjct: 371 DRRNNRIGFA 380
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 147/370 (39%), Gaps = 76/370 (20%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN----GCPGTSGLQIQLNFFDPSSSSTA 142
YY ++ +G+PP+ F V DTGS +WV S C+ C + FD S SS
Sbjct: 17 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC-------VYHKLFDASDSS-- 67
Query: 143 SLVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLT 202
S + N T +Y G+ V+ FL D I G +T
Sbjct: 68 ---------------------SYKHNGTELTLRYSTGT------VSGFLSQDIITVGGIT 100
Query: 203 TNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFG--QQSMS----VISQLSSQG-LTPRVF 255
MFG T + L DG+ G G +Q++ + + SQG L VF
Sbjct: 101 VTQ----MFGEVT-EMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVF 155
Query: 256 SHCLKGDSNG----GGILVLG----EIVEPNIVYSPLVPSQPHYNLNLQSISVNGQTLSI 307
S DS GG +VLG + E N Y L+ + + + ++ +SV TL
Sbjct: 156 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGV-WQIQMKGVSVGSSTLLC 214
Query: 308 DPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQI 367
+ + +VDTG + + ++ + L+ A+ + + + K N P I
Sbjct: 215 EDGCLA-------LVDTGASYISGSTSSIEKLMEAL--GAKKRLFDYVVKCNEGPTLPDI 265
Query: 368 SFNFAGGASLILNAQEYLIQQ----NSVGGTAVWCIGIQKIQGQT-ILGDLVLKDKIFVY 422
SF+ GG L + +Y+ Q+ + A+ + I G T LG ++ +
Sbjct: 266 SFHL-GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEF 324
Query: 423 DLAGQRIGWS 432
D RIG++
Sbjct: 325 DRRNNRIGFA 334
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 152/356 (42%), Gaps = 60/356 (16%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y+ + +G+P ++F V DTGS LWV C+ + N F+P SST
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----DHNQFNPDDSST----- 63
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
+ S + S T+ G +G GY DT+ G ++ T
Sbjct: 64 ----------------FEATSQELSITYGTGSMTGILGY--------DTVQVGGIS--DT 97
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMS------VISQLSSQGLTPR-VFSHCL 259
QI FG S + G DGI G S+S V L QGL + +FS L
Sbjct: 98 NQI-FGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYL 155
Query: 260 KGDSNGGGILVLGEI----VEPNIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTS 315
+ + G +++LG I ++ + P V + ++ + L SI+++G+T++ S
Sbjct: 156 SSNDDSGSVVLLGGIDSSYYTGSLNWVP-VSVEGYWQITLDSITMDGETIAC-------S 207
Query: 316 SNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGA 375
IVDTGT+L +A + + I +S + V++ + ++ P I F G
Sbjct: 208 GGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSL-PDIVFTI-NGV 265
Query: 376 SLILNAQEYLIQQNSVGGTAVWCIGIQKIQGQT-ILGDLVLKDKIFVYDLAGQRIG 430
L+ Y++Q + + + + G+ ILGD+ ++ V+D A ++G
Sbjct: 266 QYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVG 321
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 147/370 (39%), Gaps = 76/370 (20%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN----GCPGTSGLQIQLNFFDPSSSSTA 142
YY ++ +G+PP+ F V DTGS +WV S C+ C + FD S SS
Sbjct: 16 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC-------VYHKLFDASDSS-- 66
Query: 143 SLVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLT 202
S + N T +Y G+ V+ FL D I G +T
Sbjct: 67 ---------------------SYKHNGTELTLRYSTGT------VSGFLSQDIITVGGIT 99
Query: 203 TNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFG--QQSMS----VISQLSSQG-LTPRVF 255
MFG T + L DG+ G G +Q++ + + SQG L VF
Sbjct: 100 VTQ----MFGEVT-EMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVF 154
Query: 256 SHCLKGDSNG----GGILVLG----EIVEPNIVYSPLVPSQPHYNLNLQSISVNGQTLSI 307
S DS GG +VLG + E N Y L+ + + + ++ +SV TL
Sbjct: 155 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGV-WQIQMKGVSVGSSTLLC 213
Query: 308 DPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQI 367
+ + +VDTG + + ++ + L+ A+ + + + K N P I
Sbjct: 214 EDGCLA-------LVDTGASYISGSTSSIEKLMEAL--GAKKRLFDYVVKCNEGPTLPDI 264
Query: 368 SFNFAGGASLILNAQEYLIQQ----NSVGGTAVWCIGIQKIQGQT-ILGDLVLKDKIFVY 422
SF+ GG L + +Y+ Q+ + A+ + I G T LG ++ +
Sbjct: 265 SFHL-GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEF 323
Query: 423 DLAGQRIGWS 432
D RIG++
Sbjct: 324 DRRNNRIGFA 333
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 147/370 (39%), Gaps = 76/370 (20%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN----GCPGTSGLQIQLNFFDPSSSSTA 142
YY ++ +G+PP+ F V DTGS +WV S C+ C + FD S SS
Sbjct: 13 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC-------VYHKLFDASDSS-- 63
Query: 143 SLVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLT 202
S + N T +Y G+ V+ FL D I G +T
Sbjct: 64 ---------------------SYKHNGTELTLRYSTGT------VSGFLSQDIITVGGIT 96
Query: 203 TNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFG--QQSMS----VISQLSSQG-LTPRVF 255
MFG T + L DG+ G G +Q++ + + SQG L VF
Sbjct: 97 VTQ----MFGEVT-EMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVF 151
Query: 256 SHCLKGDSNG----GGILVLG----EIVEPNIVYSPLVPSQPHYNLNLQSISVNGQTLSI 307
S DS GG +VLG + E N Y L+ + + + ++ +SV TL
Sbjct: 152 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGV-WQIQMKGVSVGSSTLLC 210
Query: 308 DPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQI 367
+ + +VDTG + + ++ + L+ A+ + + + K N P I
Sbjct: 211 EDGCLA-------LVDTGASYISGSTSSIEKLMEAL--GAKKRLFDYVVKCNEGPTLPDI 261
Query: 368 SFNFAGGASLILNAQEYLIQQ----NSVGGTAVWCIGIQKIQGQT-ILGDLVLKDKIFVY 422
SF+ GG L + +Y+ Q+ + A+ + I G T LG ++ +
Sbjct: 262 SFHL-GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEF 320
Query: 423 DLAGQRIGWS 432
D RIG++
Sbjct: 321 DRRNNRIGFA 330
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 147/370 (39%), Gaps = 76/370 (20%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN----GCPGTSGLQIQLNFFDPSSSSTA 142
YY ++ +G+PP+ F V DTGS +WV S C+ C + FD S SS
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC-------VYHKLFDASDSS-- 70
Query: 143 SLVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLT 202
S + N T +Y G+ V+ FL D I G +T
Sbjct: 71 ---------------------SYKHNGTELTLRYSTGT------VSGFLSQDIITVGGIT 103
Query: 203 TNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFG--QQSMS----VISQLSSQG-LTPRVF 255
MFG T + L DG+ G G +Q++ + + SQG L VF
Sbjct: 104 VTQ----MFGEVT-EMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVF 158
Query: 256 SHCLKGDSNG----GGILVLG----EIVEPNIVYSPLVPSQPHYNLNLQSISVNGQTLSI 307
S DS GG +VLG + E N Y L+ + + + ++ +SV TL
Sbjct: 159 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGV-WQIQMKGVSVGSSTLLC 217
Query: 308 DPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQI 367
+ + +VDTG + + ++ + L+ A+ + + + K N P I
Sbjct: 218 EDGCLA-------LVDTGASYISGSTSSIEKLMEAL--GAKKRLFDYVVKCNEGPTLPDI 268
Query: 368 SFNFAGGASLILNAQEYLIQQ----NSVGGTAVWCIGIQKIQGQT-ILGDLVLKDKIFVY 422
SF+ GG L + +Y+ Q+ + A+ + I G T LG ++ +
Sbjct: 269 SFHL-GGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEF 327
Query: 423 DLAGQRIGWS 432
D RIG++
Sbjct: 328 DRRNNRIGFA 337
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 152/356 (42%), Gaps = 60/356 (16%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y+ + +G+P ++F V DTGS LWV C+ + N F+P SST
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----DHNQFNPDDSST----- 63
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
+ S + S T+ G +G GY DT+ G ++ T
Sbjct: 64 ----------------FEATSQELSITYGTGSMTGILGY--------DTVQVGGIS--DT 97
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMS------VISQLSSQGLTPR-VFSHCL 259
QI FG S + G DGI G S+S V L QGL + +FS L
Sbjct: 98 NQI-FGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYL 155
Query: 260 KGDSNGGGILVLGEI----VEPNIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTS 315
+ + G +++LG I ++ + P V + ++ + L SI+++G+T++ S
Sbjct: 156 SSNDDSGSVVLLGGIDSSYYTGSLNWVP-VSVEGYWQITLDSITMDGETIAC-------S 207
Query: 316 SNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGA 375
IVDTGT+L +A + + I +S + V++ + ++ P I F G
Sbjct: 208 GGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSL-PDIVFTID-GV 265
Query: 376 SLILNAQEYLIQQNSVGGTAVWCIGIQKIQGQT-ILGDLVLKDKIFVYDLAGQRIG 430
L+ Y++Q + + + + G+ ILGD+ ++ V+D A ++G
Sbjct: 266 QYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVG 321
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 151/356 (42%), Gaps = 60/356 (16%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y+ + +G+P ++F V DTGS LWV C+ + N F+P SST
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----DHNQFNPDDSST---FE 109
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
+ Q S+ YG GS T L DT+ G ++ T
Sbjct: 110 ATXQELSI--------------------TYGTGSMTG------ILGYDTVQVGGIS--DT 141
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMS------VISQLSSQGLTPR-VFSHCL 259
QI FG S + G DGI G S+S V L QGL + +FS L
Sbjct: 142 NQI-FGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYL 199
Query: 260 KGDSNGGGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTS 315
+ + G +++LG I ++ + P V + ++ + L SI+++G+T+ + S
Sbjct: 200 SSNDDSGSVVLLGGIDSSYYTGSLNWVP-VSVEGYWQITLDSITMDGETI-------ACS 251
Query: 316 SNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGA 375
IVDTGT+L +A + + I +S + V++ + ++ P I F G
Sbjct: 252 GGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSL-PDIVFTI-DGV 309
Query: 376 SLILNAQEYLIQQNSVGGTAVWCIGIQKIQGQT-ILGDLVLKDKIFVYDLAGQRIG 430
L+ Y++Q + + + + G+ ILGD+ ++ V+D A ++G
Sbjct: 310 QYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVG 365
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 151/356 (42%), Gaps = 60/356 (16%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y+ + +G+P ++F V DTGS LWV C+ + N F+P SST
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----DHNQFNPDDSST---FE 65
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
+ Q S+ YG GS T L DT+ G ++ T
Sbjct: 66 ATXQELSI--------------------TYGTGSMTG------ILGYDTVQVGGIS--DT 97
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMS------VISQLSSQGLTPR-VFSHCL 259
QI FG S + G DGI G S+S V L QGL + +FS L
Sbjct: 98 NQI-FGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYL 155
Query: 260 KGDSNGGGILVLGEI----VEPNIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTS 315
+ + G +++LG I ++ + P V + ++ + L SI+++G+T+ + S
Sbjct: 156 SSNDDSGSVVLLGGIDSSYYTGSLNWVP-VSVEGYWQITLDSITMDGETI-------ACS 207
Query: 316 SNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGA 375
IVDTGT+L +A + + I +S + V++ + ++ P I F G
Sbjct: 208 GGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSL-PDIVFTI-NGV 265
Query: 376 SLILNAQEYLIQQNSVGGTAVWCIGIQKIQGQT-ILGDLVLKDKIFVYDLAGQRIG 430
L+ Y++Q + + + + G+ ILGD+ ++ V+D A ++G
Sbjct: 266 QYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVG 321
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 151/356 (42%), Gaps = 60/356 (16%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y+ + +G+P ++F V DTGS LWV C+ + N F+P SST
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----DHNQFNPDDSST---FE 65
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
+ Q S+ YG GS T L DT+ G ++ T
Sbjct: 66 ATXQELSI--------------------TYGTGSMTG------ILGYDTVQVGGIS--DT 97
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMS------VISQLSSQGLTPR-VFSHCL 259
QI FG S + G DGI G S+S V L QGL + +FS L
Sbjct: 98 NQI-FGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYL 155
Query: 260 KGDSNGGGILVLGEI----VEPNIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTS 315
+ + G +++LG I ++ + P V + ++ + L SI+++G+T+ + S
Sbjct: 156 SSNDDSGSVVLLGGIDSSYYTGSLNWVP-VSVEGYWQITLDSITMDGETI-------ACS 207
Query: 316 SNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGA 375
IVDTGT+L +A + + I +S + V++ + ++ P I F G
Sbjct: 208 GGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSL-PDIVFTID-GV 265
Query: 376 SLILNAQEYLIQQNSVGGTAVWCIGIQKIQGQT-ILGDLVLKDKIFVYDLAGQRIG 430
L+ Y++Q + + + + G+ ILGD+ ++ V+D A ++G
Sbjct: 266 QYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVG 321
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 89/392 (22%), Positives = 152/392 (38%), Gaps = 90/392 (22%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
YY ++ +G+PP++ + +DTGS V+ GT I +FD SST
Sbjct: 15 YYLEMLIGTPPQKLQILVDTGSSNFAVA--------GTPHSYID-TYFDTERSSTY---- 61
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
S T +Y GS T G+ D + + S N
Sbjct: 62 -------------------RSKGFDVTVKYTQGSWT-GFVGEDLVTIPKGFNTSFLVNI- 100
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMS--------VISQLSSQGLTPRVFSHC 258
+ ++ + +GI G +++ L +Q P VFS
Sbjct: 101 ------ATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVTQANIPNVFSMQ 154
Query: 259 L-------KGDSNGGGILVLGEIVEP-----NIVYSPLVPSQPHYNLNLQSISVNGQTLS 306
+ G GG LVLG I EP +I Y+P + + +Y + + + + GQ+L+
Sbjct: 155 MCGAGLPVAGSGTNGGSLVLGGI-EPSLYKGDIWYTP-IKEEWYYQIEILKLEIGGQSLN 212
Query: 307 IDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHT----- 361
+D ++ IVD+GTTL L + +D ++ A+ + S+ P + G T
Sbjct: 213 LDCREYNADK---AIVDSGTTLLRLPQKVFDAVVEAVARA---SLIPEFSDGFWTGSQLA 266
Query: 362 ---------AIFPQISF-----NFAGGASLILNAQEYLIQQNSVGGTAVWC--IGIQKIQ 405
+ FP+IS N + + + Q Y IQ G C GI
Sbjct: 267 CWTNSETPWSYFPKISIYLRDENSSRSFRITILPQLY-IQPMMGAGLNYECYRFGISPST 325
Query: 406 GQTILGDLVLKDKIFVYDLAGQRIGWSNYDCS 437
++G V++ ++D A +R+G++ C+
Sbjct: 326 NALVIGATVMEGFYVIFDRAQKRVGFAASPCA 357
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 83/387 (21%), Positives = 146/387 (37%), Gaps = 63/387 (16%)
Query: 85 GLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASL 144
GL++ +Q +P + V +D + LWV+C Q + +
Sbjct: 21 GLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQ----------QYSSKTYQAPFCHSTQC 70
Query: 145 VRCSDQRCSLGLNTADSGCSSESNQC------SYTFQYGDGSGTSGYYVADFLHLDTILQ 198
R + +C + GC N C T Q G G T
Sbjct: 71 SRANTHQCLSCPAASRPGC--HKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQL 128
Query: 199 GSLTTNSTAQIMFGCST---MQTGDLTKSDRAVDGIFGFGQQSMSVISQLSSQGLTPRVF 255
G L T Q +F C+ +Q G R G+ G G +S+ +QL+S R F
Sbjct: 129 GPLVT--VPQFLFSCAPSFLVQKG----LPRNTQGVAGLGHAPISLPNQLASHFGLQRQF 182
Query: 256 SHCLKGDSNGGGILVLGEIVEPN-------------IVYSPL-VPSQPHYNLNLQSISVN 301
+ CL G ++ G+ PN + ++PL + Q YN+ + SI +N
Sbjct: 183 TTCLSRYPTSKGAIIFGD--APNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRIN 240
Query: 302 GQT---LSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVS-----QSVRP 353
+ L+ S S++ GT++ T T L ++ Y + +SV P
Sbjct: 241 QHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAP 300
Query: 354 --VLTKGNHTAIFPQISF--NFAGGASLILNAQEYLIQQNSVGGTAVWCIGI----QKIQ 405
+ N +P + + G ++ ++ ++Q V C+G+ + +
Sbjct: 301 FGLCFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQ----AQPGVTCLGVMNGGMQPR 356
Query: 406 GQTILGDLVLKDKIFVYDLAGQRIGWS 432
+ LG L++ + V+DLA R+G+S
Sbjct: 357 AEITLGARQLEENLVVFDLARSRVGFS 383
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 147/359 (40%), Gaps = 66/359 (18%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y+ + +G+P ++F V DTGS LWV C+ T+ N F+P SST
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNH-----NRFNPEDSSTY---- 64
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
S S S T+ G +G GY DT+ G ++ T
Sbjct: 65 -----------------QSTSETVSITYGTGSMTGILGY--------DTVQVGGIS--DT 97
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMS------VISQLSSQGLTPR-VFSHCL 259
QI FG S + G DGI G S+S V + +QGL + +FS L
Sbjct: 98 NQI-FGLSETEPGSFLYY-APFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYL 155
Query: 260 KGDSNGGGILVLGEI----VEPNIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTS 315
D G +++ G I ++ + P V + ++ + + SI++NG+ A + +
Sbjct: 156 SADDQSGSVVIFGGIDSSYYTGSLNWVP-VTVEGYWQITVDSITMNGE-------AIACA 207
Query: 316 SNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---VLTKGNHTAIFPQISFNFA 372
IVDTGT+L LT P+ N I S + S ++ + + P I F
Sbjct: 208 EGCQAIVDTGTSL--LT-GPTSPIAN-IQSDIGASENSDGDMVVSCSAISSLPDIVFTI- 262
Query: 373 GGASLILNAQEYLIQQNSVGGTAVWCIGIQKIQGQT-ILGDLVLKDKIFVYDLAGQRIG 430
G + Y++Q + + + G+ ILGD+ ++ V+D A ++G
Sbjct: 263 NGVQYPVPPSAYILQSEGSCISGFQGMNVPTESGELWILGDVFIRQYFTVFDRANNQVG 321
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 147/359 (40%), Gaps = 66/359 (18%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y+ + +G+P ++F V DTGS LWV C+ T+ N F+P SST
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNH-----NRFNPEDSSTY---- 64
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
S S S T+ G +G GY DT+ G ++ T
Sbjct: 65 -----------------QSTSETVSITYGTGSMTGILGY--------DTVQVGGIS--DT 97
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMS------VISQLSSQGLTPR-VFSHCL 259
QI FG S + G DGI G S+S V + +QGL + +FS L
Sbjct: 98 NQI-FGLSETEPGSFLYY-APFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYL 155
Query: 260 KGDSNGGGILVLGEI----VEPNIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTS 315
D G +++ G I ++ + P V + ++ + + SI++NG+ A + +
Sbjct: 156 SADDQSGSVVIFGGIDSSYYTGSLNWVP-VTVEGYWQITVDSITMNGE-------AIACA 207
Query: 316 SNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---VLTKGNHTAIFPQISFNFA 372
IVDTGT+L LT P+ N I S + S ++ + + P I F
Sbjct: 208 EGCQAIVDTGTSL--LT-GPTSPIAN-IQSDIGASENSDGDMVVSCSAISSLPDIVFTI- 262
Query: 373 GGASLILNAQEYLIQQNSVGGTAVWCIGIQKIQGQT-ILGDLVLKDKIFVYDLAGQRIG 430
G + Y++Q + + + G+ ILGD+ ++ V+D A ++G
Sbjct: 263 NGVQYPVPPSAYILQSEGSCISGFQGMNLPTESGELWILGDVFIRQYFTVFDRANNQVG 321
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 147/368 (39%), Gaps = 81/368 (22%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQI-----QLNFFDPSSSST 141
Y + +GS ++ +V +DTGS LWV + + C T Q Q +DPS SS
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVD-CQVTYSDQTADFCKQKGTYDPSGSS- 71
Query: 142 ASLVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSL 201
S LNT + YGDGS + G L+ DT+ G +
Sbjct: 72 ----------ASQDLNTP------------FKIGYGDGSSSQG-----TLYKDTVGFGGV 104
Query: 202 TTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSM-------SVISQLSSQGLTPR- 253
+ + Q++ D T D+ GI G G ++ +V L QG+ +
Sbjct: 105 SIKN--QVLADV------DSTSIDQ---GILGVGYKTNEAGGSYDNVPVTLKKQGVIAKN 153
Query: 254 VFSHCLKGDSNGGGILVLGEIVEPNIVYS------PLVPSQPHYNLNLQSISVNGQTLSI 307
+S L G ++ G + N YS P V S ++L S+ V+G+T++
Sbjct: 154 AYSLYLNSPDAATGQIIFGGV--DNAKYSGSLIALP-VTSDRELRISLGSVEVSGKTINT 210
Query: 308 DPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGN-----HTA 362
D N ++D+GTT+ YL + D +I A ++Q + GN
Sbjct: 211 D--------NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQD-----SNGNSFYEVDCN 257
Query: 363 IFPQISFNFAGGASLILNAQEYLIQ-QNSVGGTAVWCIGIQKIQGQTILGDLVLKDKIFV 421
+ + FNF+ A + + A E+ Q G C + + ILGD L+ V
Sbjct: 258 LSGDVVFNFSKNAKISVPASEFAASLQGDDGQPYDKCQLLFDVNDANILGDNFLRSAYIV 317
Query: 422 YDLAGQRI 429
YDL I
Sbjct: 318 YDLDDNEI 325
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 147/366 (40%), Gaps = 78/366 (21%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
YY + +G+PP F V DTGS LWVS S C+ ++ N F P SST
Sbjct: 14 YYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSN-----HNKFKPRQSST----- 63
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
++G + + YG G G G L DT+ S+ S
Sbjct: 64 -----------YVETGKTVD-------LTYGTG-GMRG-----ILGQDTV---SVGGGSD 96
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMS------VISQLSSQGLTPR-VFSHCL 259
G S + G ++ DGI G S++ V + SQ L + +FS L
Sbjct: 97 PNQELGESQTEPGPF-QAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYL 155
Query: 260 KGDSNGGGILVLGEIVEPN----IVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTS 315
G G ++LG + + I + P V ++ ++ + L I+VNGQT + +
Sbjct: 156 SGGGANGSEVMLGGVDNSHYTGSIHWIP-VTAEKYWQVALDGITVNGQTAACEGCQ---- 210
Query: 316 SNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAI--FPQISFNFAG 373
IVDTGT+ +A ++ I +S +Q GN ++ P I+F G
Sbjct: 211 ----AIVDTGTSKIVAPVSALANIMKDIGASENQGEM----MGNCASVQSLPDITFTING 262
Query: 374 GASLILNAQEYLIQQNSVGGTAVWC---IGIQKIQGQT----ILGDLVLKDKIFVYDLAG 426
++ L + G +C +G + T I GD+ L++ +YD
Sbjct: 263 -------VKQPLPPSAYIEGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTN 315
Query: 427 QRIGWS 432
++G++
Sbjct: 316 NKVGFA 321
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 149/368 (40%), Gaps = 81/368 (22%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQI-----QLNFFDPSSSST 141
Y + +GS ++ +V +DTGS LWV + + C T Q Q +DPS SS
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNID-CQVTYSDQTADFCKQKGTYDPSGSS- 71
Query: 142 ASLVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSL 201
S LNT ++ YGDGS + G L+ DT+ G +
Sbjct: 72 ----------ASQDLNTP------------FSIGYGDGSSSQG-----TLYKDTVGFGGV 104
Query: 202 TTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSM-------SVISQLSSQGLTPR- 253
+ + Q++ D T D+ GI G G ++ +V L QG+ +
Sbjct: 105 SIKN--QVLADV------DSTSIDQ---GILGVGYKTNEAGGSYDNVPVTLKKQGVIAKN 153
Query: 254 VFSHCLKGDSNGGGILVLGEIVEPNIVYS------PLVPSQPHYNLNLQSISVNGQTLSI 307
+S L + G ++ G + N YS P V S ++L S+ V+G+T++
Sbjct: 154 AYSLYLNSPDSATGQIIFGGV--DNAKYSGSLIALP-VTSDRELRISLGSVEVSGKTINT 210
Query: 308 DPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGN-----HTA 362
D N ++D+GTT+ YL + D +I A ++Q + GN
Sbjct: 211 D--------NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQD-----SNGNSFYEVDCN 257
Query: 363 IFPQISFNFAGGASLILNAQEYLIQ-QNSVGGTAVWCIGIQKIQGQTILGDLVLKDKIFV 421
+ + FNF+ A + + A ++ Q G C + + ILGD L+ V
Sbjct: 258 LSGDVVFNFSKNAKISVPASDFAASTQGDDGQPYDKCQLLFDVNKANILGDNFLRSAYIV 317
Query: 422 YDLAGQRI 429
YDL I
Sbjct: 318 YDLDDNEI 325
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 145/364 (39%), Gaps = 75/364 (20%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y +KV +GS ++ V IDTGS WV S+ G V
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKG---------------------VD 52
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
C S G T S S ++ ++T +YGDGS + G + D + ++ +
Sbjct: 53 CK----SSGTFTPSSSSSYKNLGAAFTIRYGDGSTSQGTWGKDTVTINGV---------- 98
Query: 207 AQIMFGCSTMQTGDLTKSDRAVD-GIFGFGQQSMSVISQLSSQGLTP------------- 252
+ Q D+T++ +VD GI G G S + S + TP
Sbjct: 99 -----SITGQQIADVTQT--SVDQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQG 151
Query: 253 ----RVFSHCLKGDSNGGGILVLGEIVEPNIVYS-PLVPSQPHYNLNLQSISVNGQTLSI 307
+S L S G ++ G + N YS LV Q + Q+++++ ++++
Sbjct: 152 KIRTNAYSLYLNSPSAETGTIIFGGV--DNAKYSGKLVAEQV---TSSQALTISLASVNL 206
Query: 308 DPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRP--VLTKGNHTAIFP 365
S+FS G ++D+GTTL Y L + + + Q R + +T
Sbjct: 207 KGSSFSFG--DGALLDSGTTLTYFPSDFAAQLADKAGARLVQVARDQYLYFIDCNTDTSG 264
Query: 366 QISFNFAGGASLILNAQEYLIQQNSVGGTAVWCIGIQKIQGQTILGDLVLKDKIFVYDLA 425
FNF GA + + EY+ Q GT +W GIQ TILGD L+ +Y+L
Sbjct: 265 TTVFNFGNGAKITVPNTEYVYQNGD--GTCLW--GIQP-SDDTILGDNFLRHAYLLYNLD 319
Query: 426 GQRI 429
I
Sbjct: 320 ANTI 323
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 90/403 (22%), Positives = 157/403 (38%), Gaps = 85/403 (21%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y T + +P ++ +D G LWV C N+ SST VR
Sbjct: 22 YVTTINQRTPLVSENLVVDLGGRFLWVDCDQ--------------NYV----SSTYRPVR 63
Query: 147 CSDQRCSLG--------LNTADSGCSSESNQCS-YTFQYGDGSGTSGYYVADFLHLDTI- 196
C +CSL N GC +N C + + T G D + +++
Sbjct: 64 CRTSQCSLSGSIACGDCFNGPRPGC--NNNTCGVFPENPVINTATGGEVAEDVVSVESTD 121
Query: 197 --LQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSVISQLSSQGLTPRV 254
G + T + +F C+ T L V G+ G G+ +++ SQ +S R
Sbjct: 122 GSSSGRVVT--VPRFIFSCA--PTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRK 177
Query: 255 FSHCLKGDSNGGGILVLGE---IVEPNIV-------YSPLVPS-----------QP--HY 291
F+ CL G ++ +++ G PNI+ Y+PL+ + +P Y
Sbjct: 178 FAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEY 237
Query: 292 NLNLQSISVNGQTLSIDPSAFSTSSN--KGTIVDTGTTLAYLTEAAYDPLINA-ITSSVS 348
+ ++SI +N + ++++ S S SS GT + T L + Y + A I S +
Sbjct: 238 FIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAA 297
Query: 349 QSVRPVLTKGNHTAIFPQ---ISFNFAGGASLILNAQEYLIQQNSVGGTA---------- 395
+++ V + A F +S I + ++Q SV T
Sbjct: 298 RNITRVASVAPFGACFSTDNILSTRLGPSVPSI----DLVLQSESVVWTITGSNSMVYIN 353
Query: 396 --VWCIGI----QKIQGQTILGDLVLKDKIFVYDLAGQRIGWS 432
V C+G+ ++ ++G L+D + +DLA R+G+S
Sbjct: 354 DNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 90/403 (22%), Positives = 157/403 (38%), Gaps = 85/403 (21%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y T + +P ++ +D G LWV C N+ SST VR
Sbjct: 22 YVTTINQRTPLVSENLVVDLGGRFLWVDCDQ--------------NYV----SSTYRPVR 63
Query: 147 CSDQRCSLG--------LNTADSGCSSESNQCS-YTFQYGDGSGTSGYYVADFLHLDTI- 196
C +CSL N GC +N C + + T G D + +++
Sbjct: 64 CRTSQCSLSGSIACGDCFNGPRPGC--NNNTCGVFPENPVINTATGGEVAEDVVSVESTD 121
Query: 197 --LQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSVISQLSSQGLTPRV 254
G + T + +F C+ T L V G+ G G+ +++ SQ +S R
Sbjct: 122 GSSSGRVVT--VPRFIFSCA--PTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRK 177
Query: 255 FSHCLKGDSNGGGILVLGE---IVEPNIV-------YSPLVPS-----------QP--HY 291
F+ CL G ++ +++ G PNI+ Y+PL+ + +P Y
Sbjct: 178 FAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEY 237
Query: 292 NLNLQSISVNGQTLSIDPSAFSTSSN--KGTIVDTGTTLAYLTEAAYDPLINA-ITSSVS 348
+ ++SI +N + ++++ S S SS GT + T L + Y + A I S +
Sbjct: 238 FIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAA 297
Query: 349 QSVRPVLTKGNHTAIFPQ---ISFNFAGGASLILNAQEYLIQQNSVGGTA---------- 395
+++ V + A F +S I + ++Q SV T
Sbjct: 298 RNITRVASVAPFGACFSTDNILSTRLGPSVPSI----DLVLQSESVVWTITGSNSMVYIN 353
Query: 396 --VWCIGI----QKIQGQTILGDLVLKDKIFVYDLAGQRIGWS 432
V C+G+ ++ ++G L+D + +DLA R+G+S
Sbjct: 354 DNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 152/362 (41%), Gaps = 77/362 (21%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y+ K+ +G+PP+EF V DTGS LWV C S + + FDP SST R
Sbjct: 13 YFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCK-----SNVCKNHHRFDPRKSST---FR 64
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLT-TNS 205
+ S+ YG GS + FL DT+ ++ N
Sbjct: 65 NLGKPLSI--------------------HYGTGS------MEGFLGYDTVTVSNIVDPNQ 98
Query: 206 TAQIMFGCSTMQTGDL-TKSDRAVDGIFGFG------QQSMSVISQLSSQGLTPR-VFSH 257
T G ST Q G++ T S+ DGI G + S+ V + + L R +FS
Sbjct: 99 TV----GLSTEQPGEVFTYSE--FDGILGLAYPSLASEYSVPVFDNMMDRHLVARDLFSV 152
Query: 258 CLKGDSNG-GGILVLGEIVEPNIVYSPL----VPSQPHYNLNLQSISVNGQTLSIDPSAF 312
+ D NG G +L LG I +P+ L V Q ++ + S+++NG A
Sbjct: 153 YM--DRNGQGSMLTLGAI-DPSYYTGSLHWVPVTLQQYWQFTVDSVTING-------VAV 202
Query: 313 STSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFA 372
+ I+DTGT++ + + + AI ++ ++ + GN ++ P + F
Sbjct: 203 ACVGGCQAILDTGTSVLFGPSSDILKIQMAIGATENRYGEFDVNCGNLRSM-PTVVFE-- 259
Query: 373 GGASLILNAQEYLIQQNS-VGGTAVWCI-GIQKIQGQT--ILGDLVLKDKIFVYDLAGQR 428
+N ++Y + ++ +C G Q ILGD+ +++ V+D A R
Sbjct: 260 ------INGRDYPLSPSAYTSKDQGFCTSGFQGDNNSELWILGDVFIREYYSVFDRANNR 313
Query: 429 IG 430
+G
Sbjct: 314 VG 315
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 96/399 (24%), Positives = 160/399 (40%), Gaps = 80/399 (20%)
Query: 66 SAAGVVDFSVEGTYDPFVVGLYYTKVQLGSPPREFHVQIDTGSDVLWVS---CSSCNGCP 122
+A G VD G YD F + Y V +G+P ++F + DTGS WV C+ GC
Sbjct: 2 AADGSVD--TPGYYD-FDLEEYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCV 58
Query: 123 GTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGT 182
G+ FFDPS+SST + + LN YG G G
Sbjct: 59 GS-------RFFDPSASSTF-------KATNYNLN----------------ITYGTG-GA 87
Query: 183 SGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRA---VDGIFG------ 233
+G Y D+I G +T T QI+ ++ +S A +DG+FG
Sbjct: 88 NGLYFE-----DSIAIGDITV--TKQILAYVDNVRGPTAEQSPNADIFLDGLFGAAYPDN 140
Query: 234 ------FGQQSMSVISQLSSQGLTPRVFSHCLKGDSNGGGILVLG----EIVEPNIVYSP 283
+G +V L QGL ++G G +V G ++ +I Y+
Sbjct: 141 TAMEAEYGSTYNTVHVNLYKQGLISSPLFSVYMNTNSGTGEVVFGGVNNTLLGGDIAYTD 200
Query: 284 LVPSQPHY---NLNLQSISVNGQTLSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLI 340
++ Y + + I+V+G +A S + +DTGT + +A ++
Sbjct: 201 VMSRYGGYYFWDAPVTGITVDGS------AAVRFSRPQAFTIDTGTNFFIMPSSAASKIV 254
Query: 341 NAITSSVSQS----VRPVLTKGNHT---AIFPQISFNFAGGASLILNAQEYLIQQNSVGG 393
A +++ V P + N +I Q S + + + + + L+ +
Sbjct: 255 KAALPDATETQQGWVVPCASYQNSKSTISIVMQKSGSSSDTIEISVPVSKMLLPVDQSNE 314
Query: 394 TAVWCIGIQKIQGQTILGDLVLKDKIFVYDLAGQRIGWS 432
T ++ I + Q I+G+L L+ + VYD RIG++
Sbjct: 315 TCMFII-LPDGGNQYIVGNLFLRFFVNVYDFGNNRIGFA 352
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/363 (22%), Positives = 144/363 (39%), Gaps = 64/363 (17%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
YY ++ +G+PP+ F V DTGS LWV + C+ G+
Sbjct: 17 YYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGIH------------------ 58
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
L + S N +T YG G V FL D++ G +T T
Sbjct: 59 --------SLYESSDSSSYMENGDDFTIHYGSGR------VKGFLSQDSVTVGGITVTQT 104
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMS------VISQLSSQG-LTPRVFS-HC 258
FG T Q + DG+ G G + + V + SQG L +VFS +
Sbjct: 105 ----FGEVT-QLPLIPFMLAQFDGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYY 159
Query: 259 LKGDSNGGGILVLG----EIVEPNIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFST 314
+G GG +VLG + + + Y L + + + ++ +SV TL +
Sbjct: 160 NRGPHLLGGEVVLGGSDPQHYQGDFHYVSLSKTD-SWQITMKGVSVGSSTLLCEEGC--- 215
Query: 315 SSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGG 374
+VDTG++ ++ ++ A+ + + + + + P ISFN GG
Sbjct: 216 ----EVVVDTGSSFISAPTSSLKLIMQALGAK-EKRLHEYVVSCSQVPTLPDISFNL-GG 269
Query: 375 ASLILNAQEYLIQ----QNSVGGTAVWCIGIQKIQGQT-ILGDLVLKDKIFVYDLAGQRI 429
+ L++ +Y++Q ++ + A+ + I G +LG ++ +D RI
Sbjct: 270 RAYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRI 329
Query: 430 GWS 432
G++
Sbjct: 330 GFA 332
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/356 (22%), Positives = 139/356 (39%), Gaps = 58/356 (16%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y + +GS ++F+V +DTGS LWV +S C P +A +
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVPDASVT-CD------------KPRPGQSADFCK 60
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
G+ T S +S++ + YGDGS + G L+ DT+ G + T
Sbjct: 61 GK------GIYTPKSSTTSQNLGTPFYIGYGDGSSSQG-----TLYKDTVGFGGASI--T 107
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSM-------SVISQLSSQGLTPR-VFSHC 258
Q+ D+TK+ GI G G ++ +V L +QG+ + +S
Sbjct: 108 KQVF--------ADITKT-SIPQGILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLY 158
Query: 259 LKGDSNGGGILVLGEIVEPN----IVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFST 314
L + G ++ G + + ++ P V S + L S+ G+ +
Sbjct: 159 LNSPNAATGQIIFGGVDKAKYSGSLIAVP-VTSDRELRITLNSLKAVGKNI--------- 208
Query: 315 SSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGG 374
+ N ++D+GTT+ YL + +I+A + + + + FNF
Sbjct: 209 NGNIDVLLDSGTTITYLQQDVAQDIIDAFQAELKSDGQGHTFYVTDCQTSGTVDFNFDNN 268
Query: 375 ASLILNAQEYLIQQNSVGGTAV-WCIGIQKIQGQTILGDLVLKDKIFVYDLAGQRI 429
A + + A E+ + G C + I ILGD L+ VYDL +I
Sbjct: 269 AKISVPASEFTAPLSYANGQPYPKCQLLLGISDANILGDNFLRSAYLVYDLDDDKI 324
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 139/363 (38%), Gaps = 69/363 (19%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y+ + +GSPP+ F V DTGS LWV C TS + F PS SST S
Sbjct: 25 YFGTISIGSPPQNFTVIFDTGSSNLWVPSVYC-----TSPACKTHSRFQPSQSSTYS--- 76
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
+ Q S++ QYG GS SG AD Q S+ +
Sbjct: 77 -------------------QPGQ-SFSIQYGTGS-LSGIIGAD--------QVSVEGLTV 107
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSV------ISQLSSQGLTP-RVFSHCL 259
FG S + G T D DGI G G S++V + +Q L +FS +
Sbjct: 108 VGQQFGESVTEPGQ-TFVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYM 166
Query: 260 KGDSNGGG--ILVLGEIVEPN----IVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFS 313
+ GG L+ G + + + P V Q ++ + L +I V G +
Sbjct: 167 SSNPEGGAGSELIFGGYDHSHFSGSLNWVP-VTKQAYWQIALDNIQVGGTVMF------- 218
Query: 314 TSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAG 373
S IVDTGT+L L NAI ++ V + + + P ++F
Sbjct: 219 CSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPVDGEYAV--ECANLNVMPDVTFTI-N 275
Query: 374 GASLILNAQEYLIQQNSVGGTAVWCIGIQKIQGQT------ILGDLVLKDKIFVYDLAGQ 427
G L+ Y + + V G G Q + ILGD+ ++ V+D
Sbjct: 276 GVPYTLSPTAYTLL-DFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNN 334
Query: 428 RIG 430
R+G
Sbjct: 335 RVG 337
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 140/366 (38%), Gaps = 77/366 (21%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQL----NFFDPSSSSTA 142
Y + +GS ++ +V +DTGS LW+ S+ P G + + P+SS
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASS--- 70
Query: 143 SLVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLT 202
R S LNT + +YGDGS Y L+ DT+ G +
Sbjct: 71 --------RTSQNLNT------------RFDIKYGDGS-----YAKGKLYKDTVGIGGV- 104
Query: 203 TNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSVIS--------QLSSQGLTPR- 253
S +F S A GI G G QS L +QG+ +
Sbjct: 105 --SVRDQLFAN--------VWSTSARKGILGIGFQSGEATEFDYDNLPISLRNQGIIGKA 154
Query: 254 VFSHCLKGDSNGGGILVLGEIVEPN----IVYSPLVPSQPHYNLNLQSISVNGQTLSIDP 309
+S L G ++ G I + +V P+ S+ + L+S++V G+ +
Sbjct: 155 AYSLYLNSAEASTGQIIFGGIDKAKYSGSLVDLPIT-SEKKLTVGLRSVNVRGRNV---- 209
Query: 310 SAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFP---- 365
+N ++D+GTT++Y T + ++ AI + + + GN +
Sbjct: 210 -----DANTNVLLDSGTTISYFTRSIVRNILYAIGAQMKFD-----SAGNKVYVADCKTS 259
Query: 366 -QISFNFAGGASLILNAQEYLIQQNSVGGTAVWCIGIQKIQGQ-TILGDLVLKDKIFVYD 423
I F F + + E+L Q G ++ + + ILGD L+ VY+
Sbjct: 260 GTIDFQFGNNLKISVPVSEFLFQTYYTSGKPFPKCEVRIRESEDNILGDNFLRSAYVVYN 319
Query: 424 LAGQRI 429
L ++I
Sbjct: 320 LDDKKI 325
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 58/180 (32%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
YY +V +G+P ++F++ DTGS LW++ + C C G+ + +DP+ SST
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC-GSGQTK-----YDPNQSSTYQ--- 67
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
+D R +++ YGDGS SG D ++L +L
Sbjct: 68 -ADGR-------------------TWSISYGDGSSASGILAKDNVNLGGLLIKG------ 101
Query: 207 AQIMFGCSTMQTGDLTKSDRAV------DGIFGFGQQSMSVI-------SQLSSQGLTPR 253
QT +L K + A DG+ G G +++ + L SQGL R
Sbjct: 102 ----------QTIELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISR 151
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 58/180 (32%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
YY +V +G+P ++F++ DTGS LW++ + C C + +DP+ SST
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGS------RQTKYDPNQSSTY---- 66
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
+++ +++ YGDGS SG D ++L +L
Sbjct: 67 -------------------QADGRTWSISYGDGSSASGILAKDNVNLGGLLIKG------ 101
Query: 207 AQIMFGCSTMQTGDLTKSDRAV------DGIFGFGQQSMSVI-------SQLSSQGLTPR 253
QT +L K + A DG+ G G +++ + L SQGL R
Sbjct: 102 ----------QTIELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISR 151
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 138/360 (38%), Gaps = 67/360 (18%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCS--SCNGCPGTSGLQIQLNFFDPSSSSTASL 144
Y + + +GS ++ V IDTGS LWV S SC G DP+
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQ----------DPNFCKNEGT 63
Query: 145 VRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTN 204
S S LN+ ++ +YGDG+ + G + + DTI G ++
Sbjct: 64 YSPSSSSSSQNLNSP------------FSIEYGDGTTSQGTW-----YKDTIGFGGIS-- 104
Query: 205 STAQIMFGCSTMQTGDLTKSDRAVD-GIFGFGQQSM-------SVISQLSSQGLTPR-VF 255
+ Q D+T + +VD GI G G ++ +V L +QG+ + +
Sbjct: 105 --------ITKQQFADVTST--SVDQGILGIGYKTHEAEGNYDNVPVTLKNQGIISKNAY 154
Query: 256 SHCLKGDSNGGGILVLGEIVEPNIVYSPL-----VPSQPHYNLNLQSISVNGQTLSIDPS 310
S L G ++ G + N YS V S ++L ++ V GQ+++ D
Sbjct: 155 SLYLNSRQATSGQIIFGGV--DNAKYSGTLIALPVTSDNELRIHLNTVKVAGQSINADVD 212
Query: 311 AFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFN 370
++D+GTT+ YL + D +I+A + L + + F
Sbjct: 213 V---------LLDSGTTITYLQQGVADQVISAFNGQETYDANGNLFYLVDCNLSGSVDFA 263
Query: 371 FAGGASLILNAQEYLIQQNSVGGTAV-WCIGIQKIQGQTILGDLVLKDKIFVYDLAGQRI 429
F A + + A E+ + G C + ILGD L+ VYDL I
Sbjct: 264 FDKNAKISVPASEFTAPLYTEDGQVYDQCQLLFGTSDYNILGDNFLRSAYIVYDLDDNEI 323
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/333 (19%), Positives = 124/333 (37%), Gaps = 53/333 (15%)
Query: 145 VRCSDQRCSLGLNTADSGCSSES-------NQC-SYTFQYGDGSGTSGYYVADFLHLDTI 196
+ CS C L GC + S C +Y + G+ +G +T
Sbjct: 48 IPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTT 107
Query: 197 LQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSVISQLSSQGLTPRVFS 256
+ ++ C+ + L R G+ G +++ +Q++S F
Sbjct: 108 DGSKPVSKVNVGVLAACAPSKL--LASLPRGSTGVAGLANSGLALPAQVASAQKVANRFL 165
Query: 257 HCLKGDSNGGGILVLGEIVEP----NIVYSPLVPS--QPHYNLNLQSISVNGQTLSIDPS 310
CL G I G + P ++ Y+PLV P + ++ +SI V + +
Sbjct: 166 LCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEG 225
Query: 311 AFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVS-------------QSVRP---- 353
A +T G ++ T L Y PL++A T +++ ++V P
Sbjct: 226 ALATG---GVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVC 282
Query: 354 --VLTKGNHTAIF--PQISFNFAGGASLILNAQEYLIQQNSVGGTAVWCIGIQKIQG--- 406
T GN+ + P + GG+ + + ++ GTA C+ +++G
Sbjct: 283 YDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQ--GTA--CVAFVEMKGVAA 338
Query: 407 ------QTILGDLVLKDKIFVYDLAGQRIGWSN 433
ILG ++D + +D+ +R+G+S
Sbjct: 339 GDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSR 371
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 77 GTYDPFVVGLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDP 136
G YD F + Y V +G+P ++F++ DTGS WV C+ G G + FFDP
Sbjct: 11 GLYD-FDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKR----FFDP 65
Query: 137 SSSST 141
SSSST
Sbjct: 66 SSSST 70
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 79/366 (21%), Positives = 136/366 (37%), Gaps = 76/366 (20%)
Query: 86 LYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN--GCPGTSGLQIQLNFFDPSSSSTAS 143
+YY + Q+G ++F DTGS LWV + CN GC N +D + S T
Sbjct: 22 MYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTK-------NLYDSNKSKTYE 74
Query: 144 LVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTT 203
G E N S T SG++ D +
Sbjct: 75 ----------------KDGTKVEMNYVSGT--------VSGFFSKDIV------------ 98
Query: 204 NSTAQIMFGCSTMQTGDLTKSDRA-----VDGIFGFGQQSMS------VISQLSSQG-LT 251
+ A + F ++ D + A DGI G G + +S V+ +L +Q +
Sbjct: 99 -TIANLSFPYKFIEVTDTNGFEPAYTLGQFDGIVGLGWKDLSIGSVDPVVVELKNQNKIE 157
Query: 252 PRVFSHCLKGDSNGGGILVLGEIVEPNIVYSPLVPSQPHYNLNLQ-SISVNGQTLSIDPS 310
VF+ L D G L +G I E L + +++L Q + ++ L+++ +
Sbjct: 158 QAVFTFYLPFDDKHKGYLTIGGI-EDRFYEGQLTYEKLNHDLYWQVDLDLHFGNLTVEKA 216
Query: 311 AFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQI-SF 369
IVD+GT+ + A +N + P L T P++ +
Sbjct: 217 T--------AIVDSGTS----SITAPTEFLNKFFEGLDVVKIPFLPLYITTCNNPKLPTL 264
Query: 370 NFAGGASLILNAQEYLIQQNSVGGTAVWCIGIQKI---QGQTILGDLVLKDKIFVYDLAG 426
F ++ EY +QQ G ++ + I + + ILGD ++ V+D
Sbjct: 265 EFRSATNVYTLEPEYYLQQIFDFGISLCMVSIIPVDLNKNTFILGDPFMRKYFTVFDYDN 324
Query: 427 QRIGWS 432
+G++
Sbjct: 325 HTVGFA 330
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 74/197 (37%), Gaps = 43/197 (21%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y+ ++ +G+PP++F V DTGS VLWV S C + + S+
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKC---------------INSKACRAHSMYE 59
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
SD + + N YG GS + F D++ G L
Sbjct: 60 SSDS------------STYKENGTFGAIIYGTGS------ITGFFSQDSVTIGDLVVKEQ 101
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMS--VISQLSSQGLTP-RVFSHCLKG-- 261
I D R DGI G Q++S V + +QGL R FS L
Sbjct: 102 DFI----EATDEADNVFLHRLFDGILGLSFQTISVPVWYNMLNQGLVKERRFSFWLNRNV 157
Query: 262 DSNGGGILVLGEIVEPN 278
D GG LV G + +PN
Sbjct: 158 DEEEGGELVFGGL-DPN 173
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 144/358 (40%), Gaps = 68/358 (18%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNF------FDPSSSS 140
Y + +GS ++ V IDTGS LWV + C T Q NF FDPSSSS
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAE-CQVTYSGQTN-NFCKQEGTFDPSSSS 71
Query: 141 TASLVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGS 200
+A + NQ ++ +YGD + + G + + DT+ G
Sbjct: 72 SAQNL----------------------NQ-DFSIEYGDLTSSQGSF-----YKDTVGFGG 103
Query: 201 LTTNSTAQIMFGCSTMQTGDLTKS--DRAVDGIFGFGQQSM------SVISQLSSQGLTP 252
++ Q D+T + D+ + GI GF +V L QG+
Sbjct: 104 IS----------IKNQQFADVTTTSVDQGIMGI-GFTADEAGYNLYDNVPVTLKKQGIIN 152
Query: 253 R-VFSHCLKGDSNGGGILVLGEIVEPNIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSA 311
+ +S L + G ++ G + N Y+ + + P S+ + SI+
Sbjct: 153 KNAYSLYLNSEDASTGKIIFGGV--DNAKYTGTLTALPV----TSSVELRVHLGSINFDG 206
Query: 312 FSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNF 371
S S+N ++D+GTT+ Y +++ D + ++ R + + + FNF
Sbjct: 207 TSVSTNADVVLDSGTTITYFSQSTADKFARIVGATWDS--RNEIYRLPSCDLSGDAVFNF 264
Query: 372 AGGASLILNAQEYLIQQNSVGGTAVWCIGIQKIQGQTILGDLVLKDKIFVYDLAGQRI 429
G + + E +++ + +++ GI + ILGD L+ VYDL + I
Sbjct: 265 DQGVKITVPLSELILKDSD---SSICYFGISR-NDANILGDNFLRRAYIVYDLDDKTI 318
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 246
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 247 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 306
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 307 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 366
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 367 RARKRIGFAVSACHV 381
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGS 55
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 246
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 247 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 306
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 307 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 366
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 367 RARKRIGFAVSACHV 381
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGS 55
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 180 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 235
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 236 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 295
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 296 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 355
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 356 RARKRIGFAVSACHV 370
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGS 44
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 177 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 232
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 233 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 292
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 293 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 352
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 353 RARKRIGFAVSACHV 367
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGS 41
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 175 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 230
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 231 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 290
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 291 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 350
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 351 RARKRIGFAVSACHV 365
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGS 39
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 177 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 232
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 233 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 292
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 293 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 352
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 353 RARKRIGFAVSACHV 367
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGS 41
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 192 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 247
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 248 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 307
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 308 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 367
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 368 RARKRIGFAVSACHV 382
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGS 56
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 174 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 229
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 230 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 289
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 290 LMGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 349
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 350 RARKRIGFAVSACHV 364
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGS 38
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 189 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 244
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 245 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 304
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 305 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 364
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 365 RARKRIGFAVSACHV 379
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 32 YYVEMTVGSPPQTLNILVDTGS 53
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 180 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 235
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 236 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 295
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 296 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 355
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 356 RARKRIGFAVSACHV 370
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGS 44
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 197 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 252
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 253 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 312
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 313 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 372
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 373 RARKRIGFAVSACHV 387
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 40 YYVEMTVGSPPQTLNILVDTGS 61
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 175 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 230
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 231 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 290
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 291 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 350
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 351 RARKRIGFAVSACHV 365
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGS 39
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 177 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 232
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 233 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 292
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 293 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 352
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 353 RARKRIGFAVSACHV 367
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGS 41
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 246
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 247 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 306
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 307 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 366
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 367 RARKRIGFAVSACHV 381
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGS 55
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 174 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 229
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 230 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 289
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 290 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 349
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 350 RARKRIGFAVSACHV 364
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGS 38
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 175 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 230
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 231 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 290
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 291 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 350
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 351 RARKRIGFAVSACHV 365
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGS 39
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 246
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 247 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 306
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 307 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 366
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 367 RARKRIGFAVSACHV 381
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGS 55
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 211 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 266
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 267 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 326
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 327 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 386
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 387 RARKRIGFAVSACHV 401
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGS 75
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 176 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 231
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 232 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 291
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 292 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 351
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 352 RARKRIGFAVSACHV 366
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 19 YYVEMTVGSPPQTLNILVDTGS 40
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 187 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 242
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 243 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 302
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 303 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 362
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 363 RARKRIGFAVSACHV 377
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGS 51
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 234 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 289
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 290 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 349
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 350 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 409
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 410 RARKRIGFAVSACHV 424
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGS 98
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 188 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 243
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 244 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 303
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 304 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 363
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 364 RARKRIGFAVSACHV 378
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 31 YYVEMTVGSPPQTLNILVDTGS 52
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 175 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 230
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 231 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 290
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 291 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 350
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 351 RARKRIGFAVSACHV 365
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGS 39
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 175 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 230
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 231 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 290
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 291 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 350
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 351 RARKRIGFAVSACHV 365
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGS 39
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 171 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 226
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 227 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 286
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 287 LMGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 346
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 347 RARKRIGFAVSACHV 361
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 14 YYVEMTVGSPPQTLNILVDTGS 35
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 234 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 289
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 290 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 349
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 350 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 409
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 410 RARKRIGFAVSACHV 424
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGS 98
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 246
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 247 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 306
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 307 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 366
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 367 RARKRIGFAVSACHV 381
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGS 55
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 192 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 247
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 248 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 307
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 308 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 367
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 368 RARKRIGFAVSACHV 382
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGS 56
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 187 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 242
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 243 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 302
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 303 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 362
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 363 RARKRIGFAVSACHV 377
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGS 51
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 172 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 227
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 228 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 287
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 288 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 347
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 348 RARKRIGFAVSACHV 362
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGS 36
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 178 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 233
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 234 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 293
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 294 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 353
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 354 RARKRIGFAVSACHV 368
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 21 YYVEMTVGSPPQTLNILVDTGS 42
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 233 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 288
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 289 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 348
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 349 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 408
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 409 RARKRIGFAVSACHV 423
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 76 YYVEMTVGSPPQTLNILVDTGS 97
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 246
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 247 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 306
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 307 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSCGTVMGAVIMEGFYVVFD 366
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 367 RARKRIGFAVSACHV 381
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGS 55
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 211 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 266
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 267 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 326
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 327 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 386
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 387 RARKRIGFAVSACHV 401
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGS 75
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 194 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 249
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 250 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 309
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 310 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 369
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 370 RARKRIGFAVSACHV 384
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 37 YYVEMTVGSPPQTLNILVDTGS 58
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 172 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 227
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 228 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 287
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 288 LMGEVTQQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 347
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 348 RARKRIGFAVSACHV 362
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGS 36
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 187 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 242
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 243 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 302
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 303 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 362
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 363 RARKRIGFAVSACHV 377
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGS 51
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 190 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 245
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 246 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 305
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 306 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 365
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 366 RARKRIGFAVSACHV 380
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGS 54
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 187 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 242
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 243 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 302
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 303 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 362
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 363 RARKRIGFAVSACHV 377
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGS 51
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 190 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 245
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 246 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 305
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 306 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 365
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 366 RARKRIGFAVSACHV 380
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGS 54
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 190 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 245
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 246 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 305
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 306 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 365
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 366 RARKRIGFAVSACHV 380
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGS 54
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 22/179 (12%)
Query: 278 NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYD 337
++ Y+P + + +Y + + + +NGQ L +D ++ +IVD+GTT L + ++
Sbjct: 179 SLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SIVDSGTTNLRLPKKVFE 234
Query: 338 PLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFNFAGGAS-----LILNA 381
+ +I ++ S P V + T IFP IS G + + +
Sbjct: 235 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 294
Query: 382 QEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYDLAGQRIGWSNYDCSM 438
Q+YL V + C I + T++G ++++ V+D A +RIG++ C +
Sbjct: 295 QQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 353
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGS 41
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 187 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 242
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 243 VDSGTTNLRLPKKVFEAAVASIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 302
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 303 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 362
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 363 RARKRIGFAVSACHV 377
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGS 51
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSC--NGCPGTSGLQIQLNFFDPSSSST 141
Y+ K+ LG+PP+EF V DTGS WV C N C FDP SST
Sbjct: 16 YFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQR-------FDPRKSST 65
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSC--NGCPGTSGLQIQLNFFDPSSSST 141
Y+ K+ LG+PP+EF V DTGS WV C N C FDP SST
Sbjct: 16 YFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQR-------FDPRKSST 65
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 87/195 (44%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 246
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+GTT L + ++ + +I ++ S P V + T IFP IS
Sbjct: 247 VDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 306
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T +G ++++ V+D
Sbjct: 307 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTCMGAVIMEGFYVVFD 366
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 367 RARKRIGFAVSACHV 381
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGS 55
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/333 (18%), Positives = 120/333 (36%), Gaps = 53/333 (15%)
Query: 145 VRCSDQRCSLGLNTADSGCSSES-------NQC-SYTFQYGDGSGTSGYYVADFLHLDTI 196
+ CS C L GC + S C +Y + G+ +G +T
Sbjct: 48 IPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTT 107
Query: 197 LQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSVISQLSSQGLTPRVFS 256
+ ++ C+ + L R G+ G +++ +Q++S F
Sbjct: 108 DGSKPVSKVNVGVLAACAPSKL--LASLPRGSTGVAGLANSGLALPAQVASAQKVANRFL 165
Query: 257 HCLKGDSNGGGILVLGEIVEP----NIVYSPLVPS--QPHYNLNLQSISVNGQTLSIDPS 310
CL G I G + P ++ Y+PLV P + ++ +SI V + +
Sbjct: 166 LCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEG 225
Query: 311 AFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQS-------------------V 351
A +T G ++ T L Y PL++A T +++
Sbjct: 226 ALATG---GVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVVAVAPFGVC 282
Query: 352 RPVLTKGNHTAIF--PQISFNFAGGASLILNAQEYLIQQNSVGGTAVWCIGIQKIQG--- 406
T GN+ + P + GG+ + + ++ GTA C+ +++G
Sbjct: 283 YDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQ--GTA--CVAFVEMKGVAA 338
Query: 407 ------QTILGDLVLKDKIFVYDLAGQRIGWSN 433
ILG ++D + +D+ +R+G+S
Sbjct: 339 GDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSR 371
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 87/195 (44%), Gaps = 26/195 (13%)
Query: 266 GGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTI 321
GG +++G I ++ Y+P + + +Y + + + +NGQ L +D ++ +I
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTP-IRREWYYEVIIVRVEINGQDLKMDCKEYNYDK---SI 246
Query: 322 VDTGTTLAYLTEAAYDPLINAITSSVSQSVRP---------VLTKGNHTA--IFPQISFN 370
VD+G T L + ++ + +I ++ S P V + T IFP IS
Sbjct: 247 VDSGCTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLY 306
Query: 371 FAGGAS-----LILNAQEYLIQQNSVGGTAVWC--IGIQKIQGQTILGDLVLKDKIFVYD 423
G + + + Q+YL V + C I + T++G ++++ V+D
Sbjct: 307 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFD 366
Query: 424 LAGQRIGWSNYDCSM 438
A +RIG++ C +
Sbjct: 367 RARKRIGFAVSACHV 381
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 87 YYTKVQLGSPPREFHVQIDTGS 108
YY ++ +GSPP+ ++ +DTGS
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGS 55
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 72/188 (38%), Gaps = 52/188 (27%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN----GCPGTSGLQIQLNFFDPSSSSTA 142
YY ++ +G+PP+ F V DTGS +WV S C+ C + FD S SS
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC-------VYHKLFDASDSS-- 70
Query: 143 SLVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLT 202
S + N T +Y G+ V+ FL D I G +T
Sbjct: 71 ---------------------SYKHNGTELTLRYSTGT------VSGFLSQDIITVGGIT 103
Query: 203 TNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFG--QQSMS----VISQLSSQG-LTPRVF 255
MFG T + L DG+ G G +Q++ + + SQG L VF
Sbjct: 104 VTQ----MFGEVT-EMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVF 158
Query: 256 SHCLKGDS 263
S DS
Sbjct: 159 SFYYNRDS 166
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y T VQ+G+P + ++ DTGS LWV S T+ ++ + PS S+TA L+
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSE------TTASEVXQTIYTPSKSTTAKLLS 70
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y T VQ+G+P + ++ DTGS LWV S T+ ++ + PS S+TA L+
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSE------TTASEVXQTIYTPSKSTTAKLLS 70
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 25/162 (15%)
Query: 279 IVYSPLVPSQPHYNLNLQSISVNGQTL---SIDPSAFSTSSNKGTIVDTGTTLAYLTEAA 335
+ Y+P+ SQ + SV G L SID I DTGTTL L
Sbjct: 183 VAYTPVDNSQGFWEFTASGYSVGGGKLNRNSID-----------GIADTGTTLLLLD--- 228
Query: 336 YDPLINAITSSVSQSVRPVLTKG---NHTAIFPQISFNFAGGASLILNAQEYLIQQNSVG 392
D +++A ++V + +G + P SF+F G+S I + L
Sbjct: 229 -DNVVDAYYANVQSAQYDNQQEGVVFDCDEDLP--SFSFGVGSSTITIPGDLLNLTPLEE 285
Query: 393 GTAVWCIGIQKIQGQ--TILGDLVLKDKIFVYDLAGQRIGWS 432
G++ G+Q G I GD+ LK + V+DL +R+GW+
Sbjct: 286 GSSTCFGGLQSSSGIGINIFGDVALKAALVVFDLGNERLGWA 327
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 81/366 (22%), Positives = 136/366 (37%), Gaps = 76/366 (20%)
Query: 86 LYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLV 145
++Y + ++G ++F + DTGS LWV CN +SG I+ N +D S S
Sbjct: 17 MFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN----SSGCSIK-NLYDSSKSK----- 66
Query: 146 RCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNS 205
S E + YG G+ V F D + G L+
Sbjct: 67 ------------------SYEKDGTKVDITYGSGT------VKGFFSKDLVTLGHLSMPY 102
Query: 206 TAQIMFGCSTMQTGDLTK--SDRAVDGIFGFGQQSMS------VISQLSSQG-LTPRVFS 256
+ T DL S DGI G G + +S ++ +L +Q + +F+
Sbjct: 103 KF-----IEVIDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFT 157
Query: 257 HCLKGDSNGGGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAF 312
L G L +G I E NI Y L ++ ++L + QT+
Sbjct: 158 FYLPVHDVHAGYLTIGGIEEKFYEGNITYEKL-NHDLYWQIDLD-VHFGKQTM------- 208
Query: 313 STSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVL----TKGNHTAIFPQIS 368
IVD+GTT T A +N ++++ P L T ++ + P +
Sbjct: 209 ---EKANVIVDSGTT----TITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEM-PTLE 260
Query: 369 FNFAGGASLILNAQEYLIQQNSVGGT--AVWCIGIQKIQGQTILGDLVLKDKIFVYDLAG 426
F A + L + Y+ V T + + + ILGD ++ V+D
Sbjct: 261 FKSANN-TYTLEPEYYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDK 319
Query: 427 QRIGWS 432
+ +G++
Sbjct: 320 ESVGFA 325
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 142/382 (37%), Gaps = 105/382 (27%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y V +GSP + + +DTGS W+ S V+
Sbjct: 14 YVVNVGVGSPATTYSLLVDTGSSNTWLGADK-------------------------SYVK 48
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
S S+ S++ S T+ G SGT + DT+ GSLT
Sbjct: 49 TST-------------SSATSDKVSVTYGSGSFSGTE--------YTDTVTLGSLTI--- 84
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSV--------------ISQLSSQGLTP 252
+ G ++ +G VDGI G G ++V L SQG P
Sbjct: 85 PKQSIGVASRDSGF-----DGVDGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIP 139
Query: 253 R----VFSHCLKGDSNGGGILVLGEI----VEPNIVYSPLV---PSQPHYNLNLQSISVN 301
V +S+ G L G +I Y+P+ P+ ++ +N QSI
Sbjct: 140 TNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-QSIRY- 197
Query: 302 GQTLSIDPSAFSTSSNKGTIVDTGTTLAYLTE---AAYDPLINAITSSVSQSVRPVLTKG 358
G + SI SS G IVDTGTTL + A Y A+ + + +R LT
Sbjct: 198 GSSTSI------LSSTAG-IVDTGTTLTLIASDAFAKYKKATGAVADNNTGLLR--LTTA 248
Query: 359 NHTAIFPQISFNFAGGASLILNAQEYLIQQN---SVGGTA------VWCIGIQKIQGQTI 409
+ + Q F GG + L A + +N ++GG+A V +G +G
Sbjct: 249 QYANL--QSLFFTIGGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDF 306
Query: 410 LGDLVLKDKIF-VYDLAGQRIG 430
+ L ++ + VYD +R+G
Sbjct: 307 INGLTFLERFYSVYDTTNKRLG 328
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSC 118
Y+ ++ +G+PP++F V DTGS LWV + C
Sbjct: 54 YFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKC 85
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 90/424 (21%), Positives = 155/424 (36%), Gaps = 80/424 (18%)
Query: 30 SFPVTLTLERAIPASHKVELSQLIAR--DRVRHGRLLQSAAGVVDFSVEGTYDPFVVGLY 87
+F + ++ + K L I + + G + Q+ G + +E D ++
Sbjct: 7 AFKIERPYDKVLKTISKKNLKNYIKETFNFFKSGYMKQNYLGSENDVIE--LDDVANIMF 64
Query: 88 YTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVRC 147
Y + ++G ++F + DTGS LWV CN +SG I+ N +D S S
Sbjct: 65 YGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN----SSGCSIK-NLYDSSKSK------- 112
Query: 148 SDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTA 207
S E + YG G+ V F D + G L+
Sbjct: 113 ----------------SYEKDGTKVDITYGSGT------VKGFFSKDLVTLGHLSMPYKF 150
Query: 208 QIMFGCSTMQTGDLTK--SDRAVDGIFGFGQQSMS------VISQLSSQG-LTPRVFSHC 258
T DL S DGI G G + +S ++ +L +Q + +F+
Sbjct: 151 -----IEVTDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFY 205
Query: 259 LKGDSNGGGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFST 314
L G L +G I E NI Y L ++ ++L + QT+
Sbjct: 206 LPVHDVHAGYLTIGGIEEKFYEGNITYEKL-NHDLYWQIDLD-VHFGKQTM--------- 254
Query: 315 SSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVL----TKGNHTAIFPQISFN 370
IVD+GTT T A +N ++++ P L T ++ + P + F
Sbjct: 255 -EKANVIVDSGTT----TITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEM-PTLEFK 308
Query: 371 FAGGASLILNAQEYLIQQNSVGGT--AVWCIGIQKIQGQTILGDLVLKDKIFVYDLAGQR 428
A + L + Y+ V T + + + ILGD ++ V+D +
Sbjct: 309 SANN-TYTLEPEYYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKES 367
Query: 429 IGWS 432
+G++
Sbjct: 368 VGFA 371
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 95/379 (25%), Positives = 148/379 (39%), Gaps = 105/379 (27%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y T V +G H+ DTGS LWV S Q + + PSSS+T
Sbjct: 16 YLTPVTVGK--STLHLDFDTGSADLWVFSDEL-----PSSEQTGHDLYTPSSSAT----- 63
Query: 147 CSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNST 206
+ + S+ YGDGS SG ++ DT+ G +TTN
Sbjct: 64 -------------------KLSGYSWDISYGDGSSASG-----DVYRDTVTVGGVTTNK- 98
Query: 207 AQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSVI---------SQLSSQGLTPRVFSH 257
Q + S + + + D A DG+ G S++ + + SQ +P +F+
Sbjct: 99 -QAVEAASKISSEFV--QDTANDGLLGLAFSSINTVQPKAQTTFFDTVKSQLDSP-LFAV 154
Query: 258 CLKGDSNGGGILVLGEIVEP----NIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFS 313
LK D+ G + G I + +I Y+ SQ ++ + S+ S
Sbjct: 155 QLKHDAPG--VYDFGYIDDSKYTGSITYTDADSSQGYWGFSTDGYSIG--------DGSS 204
Query: 314 TSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVR---------------PVLTK- 357
+SS I DTGTTL L D +++A VS + P T
Sbjct: 205 SSSGFSAIADTGTTLILLD----DEIVSAYYEQVSGAQESYEAGGYVFSCSTDLPDFTVV 260
Query: 358 -GNHTAIFPQISFNFA---GGASLILNAQEYLIQQNSVGGTAVWCIGIQKIQGQTILGDL 413
G++ A+ P N+A G+S IQ NS G+ G +ILGD+
Sbjct: 261 IGDYKAVVPGKYINYAPVSTGSSTCYGG----IQSNS---------GL----GLSILGDV 303
Query: 414 VLKDKIFVYDLAGQRIGWS 432
LK + V++ G ++G++
Sbjct: 304 FLKSQYVVFNSEGPKLGFA 322
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 81/365 (22%), Positives = 133/365 (36%), Gaps = 74/365 (20%)
Query: 86 LYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN--GCPGTSGLQIQLNFFDPSSSSTAS 143
++Y + ++G ++F + DTGS LWV CN GC ST
Sbjct: 15 MFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSIGC------------------STKH 56
Query: 144 LVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTT 203
L S + S E + YG G+ V F D + G L+
Sbjct: 57 LYDSSKSK------------SYEKDGTKVEITYGSGT------VRGFFSKDLVTLGYLSL 98
Query: 204 NSTAQIMFGCSTMQTGDLTKSDRAV--DGIFGFGQQSMS------VISQLSSQG-LTPRV 254
T DL A DGI G G + +S ++ +L +Q + +
Sbjct: 99 PYKF-----IEVTDTDDLEPLYTAAEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDQAL 153
Query: 255 FSHCLKGDSNGGGILVLGEIVEPNIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFST 314
F+ L G L +G I E L + +++L Q + +D + T
Sbjct: 154 FTFYLPVHDKHSGYLTIGGI-EEKFYEGELTYEKLNHDLFWQ--------VDLDVNFGKT 204
Query: 315 SSNKG-TIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVL----TKGNHTAIFPQISF 369
S K IVD+GT+ T A IN ++ P L T N+ + P + F
Sbjct: 205 SMEKANVIVDSGTS----TITAPTSFINKFFKDLNVIKVPFLPFYITTCNNKDM-PTLEF 259
Query: 370 NFAGGASLILNAQEYLIQQNSVGGT--AVWCIGIQKIQGQTILGDLVLKDKIFVYDLAGQ 427
A + L + Y+ + T ++ + + + ILGD ++ V+D +
Sbjct: 260 KSANN-TYTLEPEYYMEPLLDIDDTLCMLYILPVDIDKNTFILGDPFMRKYFTVFDYDKE 318
Query: 428 RIGWS 432
IG++
Sbjct: 319 SIGFA 323
>pdb|1IZD|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase
pdb|1IZE|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase Complexed With Pepstatin
Length = 323
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 31/126 (24%)
Query: 321 IVDTGTTLAYLTEA---AYDPLINAITSSVSQS--VRPV--------LTKGNHTAIFPQI 367
I DTGTTL L ++ AY +N + SQ V P +T G++TA P
Sbjct: 212 IADTGTTLLLLDDSIVDAYYEQVNGASYDSSQGGYVFPSSASLPDFSVTIGDYTATVPGE 271
Query: 368 SFNFAGGASLILNAQEYL-IQQNSVGGTAVWCIGIQKIQGQTILGDLVLKDKIFVYDLAG 426
+FA + N Q + IQ NS GI G +I GD+ LK + V+D +G
Sbjct: 272 YISFAD----VGNGQTFGGIQSNS---------GI----GFSIFGDVFLKSQYVVFDASG 314
Query: 427 QRIGWS 432
R+G++
Sbjct: 315 PRLGFA 320
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y T VQ+G+P + ++ DTGS LWV S G I + PS S+TA L+
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASE-VDGQTI----YTPSKSTTAKLLS 71
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVR 146
Y T VQ+G+P + ++ DTGS LWV S G I + PS S+TA L+
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASE-VDGQTI----YTPSKSTTAKLLS 71
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN 119
YY ++ +G+PP+ F V DTGS LWV C
Sbjct: 15 YYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCK 47
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNS|B Chain B, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNT|A Chain A, Crystal Structure Of Pepstatin A Bound Histo-aspartic
Protease (hap) From Plasmodium Falciparum
pdb|3FNU|A Chain A, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|B Chain B, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|C Chain C, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|D Chain D, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 332
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 64/322 (19%), Positives = 131/322 (40%), Gaps = 33/322 (10%)
Query: 123 GTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGT 182
G +G + F SS+ ++C+ + C N DS S + + +GT
Sbjct: 27 GDNGQKFNFLFHTASSNVWVPSIKCTSESCE-SKNHYDSSKSKTYEKDDTPVKLTSKAGT 85
Query: 183 -SGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSV 241
SG + D + + G L S + + + S+ VDG+FG G + +S+
Sbjct: 86 ISGIFSKDLVTI-----GKL---SVPYKFIEMTEIVGFEPFYSESDVDGVFGLGWKDLSI 137
Query: 242 ------ISQLSSQG-LTPRVFSHCLKGDSNGGGILVLGEIVEPNIVYSPLVPSQPHYNLN 294
I +L +Q + V+S L ++ G L +G I E PL + +++L
Sbjct: 138 GSIDPYIVELKTQNKIEQAVYSIYLPPENKNKGYLTIGGI-EERFFDGPLNYEKLNHDLM 196
Query: 295 LQSISVNGQTLSIDPSAFSTSSNKGTIV-DTGTTLAYLTEAAYDPLINAITSSVSQSVRP 353
Q + +D + SS K ++ D+ T++ + ++ + + + +
Sbjct: 197 WQ--------VDLDVHFGNVSSKKANVILDSATSVITVPTEFFNQFVESASVFKVPFLSL 248
Query: 354 VLTKGNHTAIFPQISFNFAGGASLILNAQEYLIQQNSVGGTAVWCIGIQKI---QGQTIL 410
+T +T + P + + + L ++YL ++ +A+ + I I + +L
Sbjct: 249 YVTTCGNTKL-PTLEYR-SPNKVYTLEPKQYLEPLENI-FSALCMLNIVPIDLEKNTFVL 305
Query: 411 GDLVLKDKIFVYDLAGQRIGWS 432
GD ++ VYD +G++
Sbjct: 306 GDPFMRKYFTVYDYDNHTVGFA 327
>pdb|3HDJ|A Chain A, The Crystal Structure Of Probable Ornithine Cyclodeaminase
From Bordetella Pertussis Tohama I
pdb|3HDJ|B Chain B, The Crystal Structure Of Probable Ornithine Cyclodeaminase
From Bordetella Pertussis Tohama I
Length = 313
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 185 YYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSVISQ 244
+ AD L T G+LT TA C+ + G L + +V G+FG G Q +Q
Sbjct: 84 FSAADGRPLATCDAGTLTRKRTA----ACTVLAAGALARPRSSVLGLFGAGTQGAEHAAQ 139
Query: 245 LSSQGLTPRVFSH 257
LS++ + H
Sbjct: 140 LSARFALEAILVH 152
>pdb|1SMO|A Chain A, Crystal Structure Of Human Triggering Receptor Expressed
On Myeloid Cells 1 (Trem-1) At 1.47 .
pdb|1SMO|B Chain B, Crystal Structure Of Human Triggering Receptor Expressed
On Myeloid Cells 1 (Trem-1) At 1.47
Length = 119
Score = 32.3 bits (72), Expect = 0.67, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 28 DGSFPVTLT-LERAIPASHKVELSQLIARDRVRHGRLLQSAAGVVDFSVEGTYDPFVVGL 86
DG P TL ER SH V++ ++I D HG L +V+ VE + GL
Sbjct: 40 DGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLL---RVRMVNLQVEDS------GL 90
Query: 87 YYTKVQLGSPPREFHVQID 105
Y + + PP+E H+ D
Sbjct: 91 Y--QCVIYQPPKEPHMLFD 107
>pdb|1Q8M|A Chain A, Crystal Structure Of The Human Myeloid Cell Activating
Receptor Trem-1
pdb|1Q8M|B Chain B, Crystal Structure Of The Human Myeloid Cell Activating
Receptor Trem-1
pdb|1Q8M|C Chain C, Crystal Structure Of The Human Myeloid Cell Activating
Receptor Trem-1
pdb|1Q8M|D Chain D, Crystal Structure Of The Human Myeloid Cell Activating
Receptor Trem-1
Length = 127
Score = 32.3 bits (72), Expect = 0.67, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 28 DGSFPVTLT-LERAIPASHKVELSQLIARDRVRHGRLLQSAAGVVDFSVEGTYDPFVVGL 86
DG P TL ER SH V++ ++I D HG L +V+ VE + GL
Sbjct: 45 DGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLL---RVRMVNLQVEDS------GL 95
Query: 87 YYTKVQLGSPPREFHVQID 105
Y + + PP+E H+ D
Sbjct: 96 Y--QCVIYQPPKEPHMLFD 112
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 64/322 (19%), Positives = 131/322 (40%), Gaps = 33/322 (10%)
Query: 123 GTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGT 182
G +G + F SS+ ++C+ + C N DS S + + +GT
Sbjct: 146 GDNGQKFNFLFHTASSNVWVPSIKCTSESCE-SKNHYDSSKSKTYEKDDTPVKLTSKAGT 204
Query: 183 -SGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSV 241
SG + D + + G L S + + + S+ VDG+FG G + +S+
Sbjct: 205 ISGIFSKDLVTI-----GKL---SVPYKFIEMTEIVGFEPFYSESDVDGVFGLGWKDLSI 256
Query: 242 ------ISQLSSQG-LTPRVFSHCLKGDSNGGGILVLGEIVEPNIVYSPLVPSQPHYNLN 294
I +L +Q + V+S L ++ G L +G I E PL + +++L
Sbjct: 257 GSIDPYIVELKTQNKIEQAVYSIYLPPENKNKGYLTIGGI-EERFFDGPLNYEKLNHDLM 315
Query: 295 LQSISVNGQTLSIDPSAFSTSSNKGTIV-DTGTTLAYLTEAAYDPLINAITSSVSQSVRP 353
Q + +D + SS K ++ D+ T++ + ++ + + + +
Sbjct: 316 WQ--------VDLDVHFGNVSSKKANVILDSATSVITVPTEFFNQFVESASVFKVPFLSL 367
Query: 354 VLTKGNHTAIFPQISFNFAGGASLILNAQEYLIQQNSVGGTAVWCIGIQKI---QGQTIL 410
+T +T + P + + + L ++YL ++ +A+ + I I + +L
Sbjct: 368 YVTTCGNTKL-PTLEYR-SPNKVYTLEPKQYLEPLENI-FSALCMLNIVPIDLEKNTFVL 424
Query: 411 GDLVLKDKIFVYDLAGQRIGWS 432
GD ++ VYD +G++
Sbjct: 425 GDPFMRKYFTVYDYDNHTVGFA 446
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 45/218 (20%)
Query: 86 LYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLV 145
++Y + Q+G+ + F DTGS LWV +C+ +
Sbjct: 15 MFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCDS------------------------I 50
Query: 146 RCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNS 205
CS + L A + S E + YG G+ GY+ D + L G L S
Sbjct: 51 GCSTKH----LYDASASKSYEKDGTKVEISYGSGT-VRGYFSKDVISL-----GDL---S 97
Query: 206 TAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMS------VISQLSSQG-LTPRVFSHC 258
+ + S DGI G G + +S V+ +L Q + +F+
Sbjct: 98 LPYKFIEVTDADDLEPIYSGSEFDGILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFY 157
Query: 259 LKGDSNGGGILVLGEIVEPNIVYSPLVPSQPHYNLNLQ 296
L G L +G I E + PL + +++L Q
Sbjct: 158 LPVHDKHVGYLTIGGI-ESDFYEGPLTYEKLNHDLYWQ 194
>pdb|3VEG|A Chain A, Rhodococcus Jostii Rha1 Dypb R244l Variant In Complex With
Heme
pdb|3VEG|B Chain B, Rhodococcus Jostii Rha1 Dypb R244l Variant In Complex With
Heme
pdb|3VEG|C Chain C, Rhodococcus Jostii Rha1 Dypb R244l Variant In Complex With
Heme
Length = 353
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 38 ERAIPASHKVELSQLIARDRVRHGRLLQSAA-GVVDFSVEGTY------DPFVVGLYYTK 90
+ A P++ V L+ ++ D V H LL + A G + + GTY DP V L +
Sbjct: 221 DDAQPSNSHVTLNTIVDDDGVEHDILLDNMAFGSLGEAEYGTYFIGYAKDPAVTELMLRR 280
Query: 91 VQLGSPPREFHVQID 105
+ LG PP + +D
Sbjct: 281 MFLGEPPGNYDRVLD 295
>pdb|3IZG|G Chain G, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|3IZG|A Chain A, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|3IZG|B Chain B, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|3IZG|C Chain C, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|3IZG|D Chain D, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|3IZG|E Chain E, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|3IZG|F Chain F, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|2XVR|A Chain A, Phage T7 Empty Mature Head Shell
pdb|2XVR|B Chain B, Phage T7 Empty Mature Head Shell
pdb|2XVR|C Chain C, Phage T7 Empty Mature Head Shell
pdb|2XVR|D Chain D, Phage T7 Empty Mature Head Shell
pdb|2XVR|E Chain E, Phage T7 Empty Mature Head Shell
pdb|2XVR|F Chain F, Phage T7 Empty Mature Head Shell
pdb|2XVR|G Chain G, Phage T7 Empty Mature Head Shell
Length = 345
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 35 LTLERAIPASHKVELSQLIARDRVRHGRLLQSAAGVVDFSVE 76
L LERA A+ + + Q+IA+ + HG L AAG V F VE
Sbjct: 306 LALERARRANFQAD--QIIAKYAMGHGGLRPEAAGAVVFKVE 345
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound
To Penicillopepsin: Phosphorus-Containing Peptide
Analogues
pdb|1PPM|E Chain E, Crystallographic Analysis Of Transition-state Mimics Bound
To Penicillopepsin: Phosphorus-containing Peptide
Analogues
pdb|1APT|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APU|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APV|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1APW|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1PPK|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Phosphorous-Containing Peptide
Analogues
pdb|1BXO|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl
Cyclo[(2s)-2-[[(1r)-1-(N-(L-N-(3-
Methylbutanoyl)valyl-L-Aspartyl)amino)-3-Methylbut Yl]
Hydroxyphosphinyloxy]-3-(3-Aminomethyl) Phenylpropanoate
pdb|1BXQ|A Chain A, Acid Proteinase (Penicillopepsin) Complex With Phosphonate
Inhibitor.
pdb|2WEA|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl[cyclo-7[(2r)-((N-Valyl)
Amino)-2-(Hydroxyl-(1s)-1-Methyoxycarbonyl-2-
Phenylethoxy)
Phosphinyloxy-Ethyl]-1-Naphthaleneacetamide], Sodium
Salt
pdb|2WEB|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl(2s)-[1-(((n-formyl)-l-
Valyl)amino-2-(2-naphthyl)ethyl)hydroxyphosphinyloxy]-3-
Phenylpropanoate, Sodium Salt
pdb|2WEC|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-
Naphthaleneacetyl))-L-Valyl)aminomethyl)hydroxy
Phosphinyloxy]-3-Phenylpropanoate, Sodium Salt
pdb|2WED|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Macrocyclic
Inhibitor:methyl[cyclo-7[(2r)-
((n-valyl)amino)-2-(hydroxyl-(1s)-1-methyoxycarbonyl-2-
Phenylethoxy)phosphinyloxy-ethyl]-1-
naphthaleneacetamide], Sodium Salt
pdb|3APP|A Chain A, Structure And Refinement Of Penicillopepsin At 1.8
Angstroms Resolution
Length = 323
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 115/289 (39%), Gaps = 45/289 (15%)
Query: 161 SGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGD 220
S E + +++ YGDGS SG + D++ G +T + A + Q
Sbjct: 60 SATGKELSGYTWSISYGDGSSASGN-----VFTDSVTVGGVTAHGQAV----QAAQQISA 110
Query: 221 LTKSDRAVDGIFGFGQQSMSVISQLS--------SQGLTPRVFSHCLKGDSNGGGILVLG 272
+ D DG+ G S++ + S L +F+ LK G + G
Sbjct: 111 QFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSSLAQPLFAVALKHQQPG--VYDFG 168
Query: 273 EI----VEPNIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTIVDTGTTL 328
I ++ Y+ + SQ ++ N+ S + Q+ FS I DTGTTL
Sbjct: 169 FIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQS----GDGFSG------IADTGTTL 218
Query: 329 AYLTEAAYDPLINAITSSVSQSVRPVLTKG---NHTAIFPQISFNFAGGASLILNAQEYL 385
L D +++ S VS + + G + + P S + +G + + + L
Sbjct: 219 LLLD----DSVVSQYYSQVSGAQQDSNAGGYVFDCSTNLPDFSVSISGYTATVPGS---L 271
Query: 386 IQQNSVGGTAVWCIGIQKIQGQ--TILGDLVLKDKIFVYDLAGQRIGWS 432
I G + GIQ G +I GD+ LK + V+D G ++G++
Sbjct: 272 INYGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFA 320
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,193,502
Number of Sequences: 62578
Number of extensions: 575646
Number of successful extensions: 1554
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1293
Number of HSP's gapped (non-prelim): 179
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)