Query 044471
Match_columns 493
No_of_seqs 283 out of 1708
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:34:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.9E-60 4.1E-65 492.0 42.1 386 29-438 21-430 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 8.2E-58 1.8E-62 469.8 37.3 338 79-437 39-397 (398)
3 PTZ00165 aspartyl protease; Pr 100.0 2.8E-56 6.2E-61 463.0 38.3 307 81-439 115-451 (482)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 7.1E-56 1.5E-60 444.9 34.0 301 82-433 2-325 (325)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 6.4E-56 1.4E-60 445.0 33.2 304 85-437 2-326 (326)
6 cd05478 pepsin_A Pepsin A, asp 100.0 1.2E-55 2.7E-60 441.5 33.4 297 82-433 6-317 (317)
7 cd05486 Cathespin_E Cathepsin 100.0 2.7E-55 5.9E-60 438.9 31.3 295 87-433 1-316 (316)
8 cd06098 phytepsin Phytepsin, a 100.0 1.2E-54 2.7E-59 434.0 33.7 290 82-433 6-317 (317)
9 cd05477 gastricsin Gastricsins 100.0 2.3E-54 5E-59 432.6 34.3 296 85-434 2-318 (318)
10 cd05487 renin_like Renin stimu 100.0 2E-54 4.3E-59 434.3 33.4 300 82-434 4-326 (326)
11 cd05485 Cathepsin_D_like Cathe 100.0 2.7E-54 5.9E-59 433.6 32.8 301 81-433 6-329 (329)
12 cd05488 Proteinase_A_fungi Fun 100.0 6.7E-54 1.4E-58 429.4 33.0 296 82-433 6-320 (320)
13 PTZ00147 plasmepsin-1; Provisi 100.0 1.2E-53 2.6E-58 440.1 34.9 306 71-435 128-450 (453)
14 cd05472 cnd41_like Chloroplast 100.0 3.5E-53 7.5E-58 420.6 32.6 281 86-436 1-299 (299)
15 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.5E-52 3.2E-57 431.2 35.9 299 82-435 134-449 (450)
16 cd05473 beta_secretase_like Be 100.0 1.5E-51 3.2E-56 419.6 33.5 314 86-444 3-355 (364)
17 cd05475 nucellin_like Nucellin 100.0 2.9E-51 6.3E-56 401.1 30.6 260 85-436 1-273 (273)
18 cd05489 xylanase_inhibitor_I_l 100.0 5.9E-51 1.3E-55 412.4 32.5 315 93-434 2-361 (362)
19 cd06097 Aspergillopepsin_like 100.0 4.9E-50 1.1E-54 393.8 28.1 264 87-433 1-278 (278)
20 cd05476 pepsin_A_like_plant Ch 100.0 7.4E-50 1.6E-54 389.7 29.1 253 86-436 1-265 (265)
21 cd05474 SAP_like SAPs, pepsin- 100.0 8.5E-49 1.8E-53 388.5 30.2 271 86-434 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 7.3E-49 1.6E-53 392.7 24.5 297 86-434 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 1.2E-45 2.6E-50 363.3 30.3 269 87-433 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1.5E-30 3.2E-35 234.4 16.8 163 87-273 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 1.8E-22 4E-27 181.5 15.1 140 290-433 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 5.2E-22 1.1E-26 166.7 12.5 108 89-234 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.9 3.5E-05 7.6E-10 62.2 6.9 93 86-236 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 95.9 0.049 1.1E-06 46.2 8.6 31 84-116 9-39 (121)
29 PF13650 Asp_protease_2: Aspar 95.6 0.099 2.1E-06 41.2 8.7 26 89-116 1-26 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.0 0.36 7.8E-06 41.0 10.9 26 406-431 99-124 (124)
31 PF08284 RVP_2: Retroviral asp 95.0 0.24 5.1E-06 42.9 9.7 27 407-433 105-131 (135)
32 cd05479 RP_DDI RP_DDI; retrope 92.8 1.1 2.4E-05 38.1 9.6 31 85-117 15-45 (124)
33 TIGR02281 clan_AA_DTGA clan AA 91.8 2.9 6.3E-05 35.3 10.9 36 288-339 9-44 (121)
34 TIGR03698 clan_AA_DTGF clan AA 91.8 1 2.2E-05 37.2 8.0 88 319-429 18-107 (107)
35 cd05484 retropepsin_like_LTR_2 91.3 0.26 5.6E-06 39.3 3.8 28 87-116 1-28 (91)
36 PF11925 DUF3443: Protein of u 88.7 4.9 0.00011 40.3 10.9 63 175-238 83-150 (370)
37 cd05484 retropepsin_like_LTR_2 88.4 7.8 0.00017 30.6 10.3 30 297-339 4-33 (91)
38 PF13975 gag-asp_proteas: gag- 87.5 1 2.3E-05 34.2 4.4 34 83-118 5-38 (72)
39 cd06095 RP_RTVL_H_like Retrope 86.0 5.2 0.00011 31.4 7.8 26 90-117 2-27 (86)
40 cd06095 RP_RTVL_H_like Retrope 83.3 12 0.00025 29.4 8.7 29 298-339 3-31 (86)
41 PF12384 Peptidase_A2B: Ty3 tr 81.1 4.3 9.4E-05 35.9 5.8 23 319-341 47-69 (177)
42 cd06094 RP_Saci_like RP_Saci_l 80.3 9.3 0.0002 30.3 6.9 78 316-418 8-87 (89)
43 PF13650 Asp_protease_2: Aspar 79.9 2.7 5.9E-05 32.7 4.0 29 298-339 3-31 (90)
44 PF00077 RVP: Retroviral aspar 79.5 2.7 5.9E-05 33.8 4.0 27 88-116 7-33 (100)
45 PF09668 Asp_protease: Asparty 78.5 3.6 7.8E-05 34.9 4.5 30 297-339 28-57 (124)
46 PF13975 gag-asp_proteas: gag- 74.2 6.1 0.00013 29.9 4.3 29 298-339 13-41 (72)
47 COG3577 Predicted aspartyl pro 73.9 8.5 0.00018 35.4 5.8 73 83-197 102-174 (215)
48 cd05483 retropepsin_like_bacte 72.8 7.2 0.00016 30.6 4.7 30 297-339 6-35 (96)
49 cd05482 HIV_retropepsin_like R 65.3 8.8 0.00019 30.4 3.6 25 90-116 2-26 (87)
50 cd05481 retropepsin_like_LTR_1 64.3 67 0.0014 25.6 8.6 22 319-340 12-33 (93)
51 PF00077 RVP: Retroviral aspar 53.7 11 0.00025 30.1 2.5 26 297-335 9-34 (100)
52 COG3577 Predicted aspartyl pro 46.4 45 0.00098 30.8 5.3 36 288-339 103-138 (215)
53 PF12384 Peptidase_A2B: Ty3 tr 44.1 29 0.00064 30.8 3.6 28 89-116 35-62 (177)
54 COG5550 Predicted aspartyl pro 38.6 23 0.00049 29.9 2.0 20 320-339 29-49 (125)
55 PF09668 Asp_protease: Asparty 36.6 59 0.0013 27.6 4.3 37 85-123 23-59 (124)
56 PF02160 Peptidase_A3: Caulifl 35.6 59 0.0013 30.0 4.4 27 406-433 91-117 (201)
57 KOG0012 DNA damage inducible p 35.4 2.5E+02 0.0054 28.4 8.8 38 397-434 308-346 (380)
58 TIGR03698 clan_AA_DTGF clan AA 34.5 1.5E+02 0.0033 24.2 6.4 24 89-112 2-29 (107)
59 cd05480 NRIP_C NRIP_C; putativ 22.3 4.4E+02 0.0095 21.5 9.2 30 397-426 73-103 (103)
60 PTZ00382 Variant-specific surf 20.5 75 0.0016 25.6 2.0 14 479-492 77-90 (96)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.9e-60 Score=491.96 Aligned_cols=386 Identities=27% Similarity=0.454 Sum_probs=299.3
Q ss_pred CCCCeEEEeeeecCC-----CC----cccHHHHHHHhHHhhhhhhhccCCceeeeccCCCccccceeEEEEEEeCCCCeE
Q 044471 29 GSFPVTLTLERAIPA-----SH----KVELSQLIARDRVRHGRLLQSAAGVVDFSVEGTYDPFVVGLYYTKVQLGSPPRE 99 (493)
Q Consensus 29 ~~~~~~l~l~r~~~~-----~~----~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~iGTP~q~ 99 (493)
.....+++|.|+-.. .+ ...+.+..+|+++|++++.++.... .++..... ..+++|+++|+||||||+
T Consensus 21 ~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~~~~~~~~-~~~~~Y~v~i~iGTPpq~ 97 (431)
T PLN03146 21 PKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASP--NDPQSDLI-SNGGEYLMNISIGTPPVP 97 (431)
T ss_pred cCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccC--CccccCcc-cCCccEEEEEEcCCCCce
Confidence 444678888775321 11 1234556677777776664332221 12222111 345799999999999999
Q ss_pred EEEEEecCCCeeEEeCCCCCCCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCCCCCCCCCCCCceeEEEcCCC
Q 044471 100 FHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTADSGCSSESNQCSYTFQYGDG 179 (493)
Q Consensus 100 ~~v~lDTGSs~lWV~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~~~~c~~~~~~~~~~~~Yg~G 179 (493)
+.|++||||+++||+|.+|..|..+. .+.|||++|+||+.++|+++.|..... ...|.. ++.|.|.+.|+||
T Consensus 98 ~~vi~DTGS~l~Wv~C~~C~~C~~~~-----~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~-~~~c~y~i~Ygdg 169 (431)
T PLN03146 98 ILAIADTGSDLIWTQCKPCDDCYKQV-----SPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSD-ENTCTYSYSYGDG 169 (431)
T ss_pred EEEEECCCCCcceEcCCCCcccccCC-----CCcccCCCCCCCcccCCCCcccccCCC--CCCCCC-CCCCeeEEEeCCC
Confidence 99999999999999999999998653 379999999999999999999976432 234654 4569999999999
Q ss_pred CeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCCCCcHHHHHHhCCCCCcceEEee
Q 044471 180 SGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSVISQLSSQGLTPRVFSHCL 259 (493)
Q Consensus 180 s~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~qL~~~g~i~~~FS~~l 259 (493)
+.+.|.+++|+|+|++...+. ..+.++.|||++.+.+.+. ...+||||||+...|+++||..+ ++++||+||
T Consensus 170 s~~~G~l~~Dtltlg~~~~~~---~~v~~~~FGc~~~~~g~f~---~~~~GilGLG~~~~Sl~sql~~~--~~~~FSycL 241 (431)
T PLN03146 170 SFTKGNLAVETLTIGSTSGRP---VSFPGIVFGCGHNNGGTFD---EKGSGIVGLGGGPLSLISQLGSS--IGGKFSYCL 241 (431)
T ss_pred CceeeEEEEEEEEeccCCCCc---ceeCCEEEeCCCCCCCCcc---CCCceeEecCCCCccHHHHhhHh--hCCcEEEEC
Confidence 988999999999998643221 2367899999998877542 24789999999999999999763 557999999
Q ss_pred cCCC---CCcceEEeCCCCC---CCeEEecCCCC--CCeeeEEEeEEEEcCEEeecCCCcccccCCCcEEEeccCcceec
Q 044471 260 KGDS---NGGGILVLGEIVE---PNIVYSPLVPS--QPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTIVDTGTTLAYL 331 (493)
Q Consensus 260 ~~~~---~~~G~l~fGg~d~---~~~~~~pl~~~--~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~l 331 (493)
.+.. ...|.|+||+..+ +++.|+|++.+ ..+|.|+|++|+||++.+.++...+......++||||||++++|
T Consensus 242 ~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~L 321 (431)
T PLN03146 242 VPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLL 321 (431)
T ss_pred CCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceec
Confidence 7522 3479999999642 35899999843 46899999999999999988776654334468999999999999
Q ss_pred cHHHHHHHHHHHHhhcccCc----cccccCCCC---cCccceEEEEecCCcEEEecCcccEEEecccCCeeEEEEEEEec
Q 044471 332 TEAAYDPLINAITSSVSQSV----RPVLTKGNH---TAIFPQISFNFAGGASLILNAQEYLIQQNSVGGTAVWCIGIQKI 404 (493)
Q Consensus 332 p~~~~~~i~~~i~~~~~~~~----~~~~~~~~~---~~~~P~i~f~f~gg~~~~l~p~~y~~~~~~~~~~~~~cl~i~~~ 404 (493)
|+++|+++.+++.+++.... ......|.. ...+|+|+|+| +|+++.|+|++|+++.. .+..|+++...
T Consensus 322 p~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~F-~Ga~~~l~~~~~~~~~~----~~~~Cl~~~~~ 396 (431)
T PLN03146 322 PSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSDIKLPIITAHF-TGADVKLQPLNTFVKVS----EDLVCFAMIPT 396 (431)
T ss_pred CHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCCCCCCeEEEEE-CCCeeecCcceeEEEcC----CCcEEEEEecC
Confidence 99999999999988775321 112234543 24789999999 68999999999999753 24579999876
Q ss_pred CCceeechhhhcceEEEEECCCCEEEEEeCCCCC
Q 044471 405 QGQTILGDLVLKDKIFVYDLAGQRIGWSNYDCSM 438 (493)
Q Consensus 405 ~~~~ILG~~fl~~~yvvfD~~~~~igfA~~~c~~ 438 (493)
.+.+|||+.|||++|+|||++++|||||+.+|+.
T Consensus 397 ~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 397 SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred CCceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 6779999999999999999999999999999974
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-58 Score=469.81 Aligned_cols=338 Identities=37% Similarity=0.695 Sum_probs=283.1
Q ss_pred CccccceeEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCC-CCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCC
Q 044471 79 YDPFVVGLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN-GCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLN 157 (493)
Q Consensus 79 ~~~~~~~~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~-~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~ 157 (493)
...+.+++|+++|+||||||+|+|++||||+++||+|..|. .|..+. .+.|||++|+|++.+.|+++.|....+
T Consensus 39 ~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~-----~~~f~p~~SSt~~~~~c~~~~c~~~~~ 113 (398)
T KOG1339|consen 39 LSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQH-----NPIFDPSASSTYKSVGCSSPRCKSLPQ 113 (398)
T ss_pred cccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccC-----CCccCccccccccccCCCCcccccccc
Confidence 34466789999999999999999999999999999999999 798641 144999999999999999999998765
Q ss_pred CCCCCCCCCCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCC
Q 044471 158 TADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQ 237 (493)
Q Consensus 158 ~~~~~c~~~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~ 237 (493)
. |.. ++.|.|.+.|+||+.++|++++|+|++++.. .....++.|||+..+.+. .....+++||||||+.
T Consensus 114 ~----~~~-~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-----~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~ 182 (398)
T KOG1339|consen 114 S----CSP-NSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-----SLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRG 182 (398)
T ss_pred C----ccc-CCcCceEEEeCCCCceeEEEEEEEEEEcccc-----ccccccEEEEeeecCccc-cccccccceEeecCCC
Confidence 4 443 7889999999998888999999999999743 123567999999999876 2222568999999999
Q ss_pred CCcHHHHHHhCCCCCcceEEeecCCCC---CcceEEeCCCCC----CCeEEecCCCCCC-eeeEEEeEEEEcCEEeecCC
Q 044471 238 SMSVISQLSSQGLTPRVFSHCLKGDSN---GGGILVLGEIVE----PNIVYSPLVPSQP-HYNLNLQSISVNGQTLSIDP 309 (493)
Q Consensus 238 ~~s~~~qL~~~g~i~~~FS~~l~~~~~---~~G~l~fGg~d~----~~~~~~pl~~~~~-~y~v~l~~i~v~~~~~~~~~ 309 (493)
.++++.|+...+...++||+||.+.+. .+|.|+||++|. +.+.|+||+.... +|+|++++|.|+++. .+++
T Consensus 183 ~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~-~~~~ 261 (398)
T KOG1339|consen 183 SLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKR-PIGS 261 (398)
T ss_pred CccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCcc-CCCc
Confidence 999999999987776789999998753 479999999994 5789999985444 999999999999987 6666
Q ss_pred CcccccCCCcEEEeccCcceeccHHHHHHHHHHHHhhc--ccCccccccCCCCcCc----cceEEEEecCCcEEEecCcc
Q 044471 310 SAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSV--SQSVRPVLTKGNHTAI----FPQISFNFAGGASLILNAQE 383 (493)
Q Consensus 310 ~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~--~~~~~~~~~~~~~~~~----~P~i~f~f~gg~~~~l~p~~ 383 (493)
..+... ..++|+||||++++||+++|++|.+++.+.+ ......+...|..... +|+|+|+|.+|+.+.+++++
T Consensus 262 ~~~~~~-~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~ 340 (398)
T KOG1339|consen 262 SLFCTD-GGGAIIDSGTSLTYLPTSAYNALREAIGAEVSVVGTDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKN 340 (398)
T ss_pred ceEecC-CCCEEEECCcceeeccHHHHHHHHHHHHhheeccccCCceeeecccCCCCcccCCcEEEEECCCcEEEeCccc
Confidence 655433 6889999999999999999999999999985 4444555567776554 99999999658999999999
Q ss_pred cEEEecccCCeeEEEEEEEecC---CceeechhhhcceEEEEECC-CCEEEEEe--CCCC
Q 044471 384 YLIQQNSVGGTAVWCIGIQKIQ---GQTILGDLVLKDKIFVYDLA-GQRIGWSN--YDCS 437 (493)
Q Consensus 384 y~~~~~~~~~~~~~cl~i~~~~---~~~ILG~~fl~~~yvvfD~~-~~~igfA~--~~c~ 437 (493)
|+++...... .|+++.... ..||||+.|||+++++||+. ++|||||+ .+|+
T Consensus 341 y~~~~~~~~~---~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 341 YLVEVSDGGG---VCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred eEEEECCCCC---ceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 9998654221 188766654 37999999999999999999 99999999 6665
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.8e-56 Score=463.01 Aligned_cols=307 Identities=22% Similarity=0.419 Sum_probs=255.1
Q ss_pred cccceeEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCC--CCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCC
Q 044471 81 PFVVGLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN--GCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNT 158 (493)
Q Consensus 81 ~~~~~~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~--~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~ 158 (493)
.|.+.+|+++|+||||||+|+|++||||+++||+|..|. .|..+ +.|||++|+||+.+.+.
T Consensus 115 n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~-------~~yd~s~SSTy~~~~~~---------- 177 (482)
T PTZ00165 115 NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPH-------RKFDPKKSSTYTKLKLG---------- 177 (482)
T ss_pred cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCccccccc-------CCCCccccCCcEecCCC----------
Confidence 477899999999999999999999999999999999997 47766 89999999999864211
Q ss_pred CCCCCCCCCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCCC
Q 044471 159 ADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQS 238 (493)
Q Consensus 159 ~~~~c~~~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~~ 238 (493)
.....+.++||+|+. .|.+++|+|++++.. +.++.|||++.+++.. +....+|||||||++.
T Consensus 178 --------~~~~~~~i~YGsGs~-~G~l~~DtV~ig~l~--------i~~q~FG~a~~~s~~~-f~~~~~DGILGLg~~~ 239 (482)
T PTZ00165 178 --------DESAETYIQYGTGEC-VLALGKDTVKIGGLK--------VKHQSIGLAIEESLHP-FADLPFDGLVGLGFPD 239 (482)
T ss_pred --------CccceEEEEeCCCcE-EEEEEEEEEEECCEE--------EccEEEEEEEeccccc-cccccccceeecCCCc
Confidence 011257899999984 899999999998754 5678999999876532 2345689999999875
Q ss_pred C---------cHHHHHHhCCCCC-cceEEeecCCCCCcceEEeCCCCC------CCeEEecCCCCCCeeeEEEeEEEEcC
Q 044471 239 M---------SVISQLSSQGLTP-RVFSHCLKGDSNGGGILVLGEIVE------PNIVYSPLVPSQPHYNLNLQSISVNG 302 (493)
Q Consensus 239 ~---------s~~~qL~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~------~~~~~~pl~~~~~~y~v~l~~i~v~~ 302 (493)
. +++++|++||+++ ++||+||.++...+|+|+|||+|+ +++.|+|+. ...+|+|++++|+|++
T Consensus 240 ~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~-~~~yW~i~l~~i~vgg 318 (482)
T PTZ00165 240 KDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVI-STDYWEIEVVDILIDG 318 (482)
T ss_pred ccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcc-ccceEEEEeCeEEECC
Confidence 4 4789999999996 899999987656689999999982 479999997 5789999999999999
Q ss_pred EEeecCCCcccccCCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCCc-----EE
Q 044471 303 QTLSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGA-----SL 377 (493)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~-----~~ 377 (493)
+.+... .....+|+||||+++++|++++++|.+++++. .+|+..+.+|+|+|+| +|. ++
T Consensus 319 ~~~~~~------~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~---------~~C~~~~~lP~itf~f-~g~~g~~v~~ 382 (482)
T PTZ00165 319 KSLGFC------DRKCKAAIDTGSSLITGPSSVINPLLEKIPLE---------EDCSNKDSLPRISFVL-EDVNGRKIKF 382 (482)
T ss_pred EEeeec------CCceEEEEcCCCccEeCCHHHHHHHHHHcCCc---------ccccccccCCceEEEE-CCCCCceEEE
Confidence 877542 23467999999999999999999999988653 2677677899999999 543 89
Q ss_pred EecCcccEEEecc-cCCeeEEEEEEEecC------CceeechhhhcceEEEEECCCCEEEEEeCCCCCC
Q 044471 378 ILNAQEYLIQQNS-VGGTAVWCIGIQKIQ------GQTILGDLVLKDKIFVYDLAGQRIGWSNYDCSMS 439 (493)
Q Consensus 378 ~l~p~~y~~~~~~-~~~~~~~cl~i~~~~------~~~ILG~~fl~~~yvvfD~~~~~igfA~~~c~~~ 439 (493)
+++|++|+++... ..+...|.++++..+ +.||||++|||++|+|||++++|||||+++|+.+
T Consensus 383 ~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~ 451 (482)
T PTZ00165 383 DMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQS 451 (482)
T ss_pred EEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCC
Confidence 9999999997421 123456768898643 5799999999999999999999999999998753
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=7.1e-56 Score=444.93 Aligned_cols=301 Identities=27% Similarity=0.472 Sum_probs=250.0
Q ss_pred ccceeEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCC----CCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCC
Q 044471 82 FVVGLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN----GCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLN 157 (493)
Q Consensus 82 ~~~~~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~----~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~ 157 (493)
+.+.+|+++|+||||||+|+|++||||+++||+|..|. .|..+ +.|+|++|+|++
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~-------~~y~~~~SsT~~-------------- 60 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLH-------HKYNSSKSSTYV-------------- 60 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCc-------CcCCcccCccee--------------
Confidence 45789999999999999999999999999999999997 46655 899999999997
Q ss_pred CCCCCCCCCCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCC
Q 044471 158 TADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQ 237 (493)
Q Consensus 158 ~~~~~c~~~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~ 237 (493)
..+|.|.+.|++|+ +.|.+++|+|++++.. +.++.|||++.+++.. +.....+||||||++
T Consensus 61 ---------~~~~~~~i~Yg~G~-~~G~~~~D~v~~g~~~--------~~~~~Fg~~~~~~~~~-~~~~~~dGilGLg~~ 121 (325)
T cd05490 61 ---------KNGTEFAIQYGSGS-LSGYLSQDTVSIGGLQ--------VEGQLFGEAVKQPGIT-FIAAKFDGILGMAYP 121 (325)
T ss_pred ---------eCCcEEEEEECCcE-EEEEEeeeEEEECCEE--------EcCEEEEEEeeccCCc-ccceeeeEEEecCCc
Confidence 34578999999998 6999999999998654 5678999998876532 123467999999987
Q ss_pred CC------cHHHHHHhCCCCC-cceEEeecCCC--CCcceEEeCCCCC----CCeEEecCCCCCCeeeEEEeEEEEcCEE
Q 044471 238 SM------SVISQLSSQGLTP-RVFSHCLKGDS--NGGGILVLGEIVE----PNIVYSPLVPSQPHYNLNLQSISVNGQT 304 (493)
Q Consensus 238 ~~------s~~~qL~~~g~i~-~~FS~~l~~~~--~~~G~l~fGg~d~----~~~~~~pl~~~~~~y~v~l~~i~v~~~~ 304 (493)
.. +++++|++||+|+ ++||+||.++. ..+|+|+||++|+ +++.|+|+. .+.+|.|++++|+|+++.
T Consensus 122 ~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~-~~~~w~v~l~~i~vg~~~ 200 (325)
T cd05490 122 RISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVT-RKAYWQIHMDQVDVGSGL 200 (325)
T ss_pred cccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcC-cceEEEEEeeEEEECCee
Confidence 55 3778999999996 89999998642 2469999999993 789999997 568999999999998764
Q ss_pred eecCCCcccccCCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCCcEEEecCccc
Q 044471 305 LSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGASLILNAQEY 384 (493)
Q Consensus 305 ~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~p~~y 384 (493)
.. ......+||||||+++++|++++++|.+++.+. ......+..+|+....+|+|+|+| ||..++|+|++|
T Consensus 201 ~~-------~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~-~~~~~~~~~~C~~~~~~P~i~f~f-gg~~~~l~~~~y 271 (325)
T cd05490 201 TL-------CKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV-PLIQGEYMIDCEKIPTLPVISFSL-GGKVYPLTGEDY 271 (325)
T ss_pred ee-------cCCCCEEEECCCCccccCCHHHHHHHHHHhCCc-cccCCCEEecccccccCCCEEEEE-CCEEEEEChHHe
Confidence 32 123457999999999999999999999999764 233345677898777899999999 889999999999
Q ss_pred EEEecccCCeeEEEEEEEecC------CceeechhhhcceEEEEECCCCEEEEEe
Q 044471 385 LIQQNSVGGTAVWCIGIQKIQ------GQTILGDLVLKDKIFVYDLAGQRIGWSN 433 (493)
Q Consensus 385 ~~~~~~~~~~~~~cl~i~~~~------~~~ILG~~fl~~~yvvfD~~~~~igfA~ 433 (493)
+++... .+...|.++|+..+ +.||||++|||++|+|||++++|||||+
T Consensus 272 ~~~~~~-~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 272 ILKVSQ-RGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EEeccC-CCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 997542 22345556787532 5799999999999999999999999995
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=6.4e-56 Score=445.00 Aligned_cols=304 Identities=28% Similarity=0.573 Sum_probs=250.6
Q ss_pred eeEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCCCCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCCCCCCC
Q 044471 85 GLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTADSGCS 164 (493)
Q Consensus 85 ~~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~~~~c~ 164 (493)
++|+++|+||||+|++.|+|||||+++||+|..|..|..+. .+.|||++|+|++.++|.+..|.. ...|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~-----~~~y~~~~Sst~~~~~C~~~~c~~-----~~~~- 70 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHM-----EPPYNLNNSITSSILYCDCNKCCY-----CLSC- 70 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCC-----CCCcCcccccccccccCCCccccc-----cCcC-
Confidence 58999999999999999999999999999999999997652 378999999999999999999953 1234
Q ss_pred CCCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCCCCc----
Q 044471 165 SESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMS---- 240 (493)
Q Consensus 165 ~~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~~~s---- 240 (493)
.++.|.|.+.|++|+.+.|.+++|+|+|++..... ......++.|||+..+.+.+. ....+||||||+...+
T Consensus 71 -~~~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~~~~~~~~~~--~~~~~GilGLg~~~~~~~~~ 146 (326)
T cd06096 71 -LNNKCEYSISYSEGSSISGFYFSDFVSFESYLNSN-SEKESFKKIFGCHTHETNLFL--TQQATGILGLSLTKNNGLPT 146 (326)
T ss_pred -CCCcCcEEEEECCCCceeeEEEEEEEEeccCCCCc-cccccccEEeccCccccCccc--ccccceEEEccCCcccccCc
Confidence 35779999999999888999999999998654321 011234689999998876543 3467999999998642
Q ss_pred HHHHHHhCCCCC---cceEEeecCCCCCcceEEeCCCCC--------------CCeEEecCCCCCCeeeEEEeEEEEcCE
Q 044471 241 VISQLSSQGLTP---RVFSHCLKGDSNGGGILVLGEIVE--------------PNIVYSPLVPSQPHYNLNLQSISVNGQ 303 (493)
Q Consensus 241 ~~~qL~~~g~i~---~~FS~~l~~~~~~~G~l~fGg~d~--------------~~~~~~pl~~~~~~y~v~l~~i~v~~~ 303 (493)
...+|.+++.+. ++||+||++. +|.|+||++|+ +++.|+|+. ...+|.|++++|+|+++
T Consensus 147 ~~~~l~~~~~~~~~~~~FS~~l~~~---~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~-~~~~y~v~l~~i~vg~~ 222 (326)
T cd06096 147 PIILLFTKRPKLKKDKIFSICLSED---GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPIT-RKYYYYVKLEGLSVYGT 222 (326)
T ss_pred hhHHHHHhcccccCCceEEEEEcCC---CeEEEECccChhhhcccccccccccCCceEEecc-CCceEEEEEEEEEEccc
Confidence 334566666542 7999999863 69999999983 578999997 45899999999999987
Q ss_pred EeecCCCcccccCCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCCcEEEecCcc
Q 044471 304 TLSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGASLILNAQE 383 (493)
Q Consensus 304 ~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~p~~ 383 (493)
.... .......+||||||++++||+++|+++.+++ |+|+|+|.+|.+++++|++
T Consensus 223 ~~~~-----~~~~~~~aivDSGTs~~~lp~~~~~~l~~~~---------------------P~i~~~f~~g~~~~i~p~~ 276 (326)
T cd06096 223 TSNS-----GNTKGLGMLVDSGSTLSHFPEDLYNKINNFF---------------------PTITIIFENNLKIDWKPSS 276 (326)
T ss_pred ccce-----ecccCCCEEEeCCCCcccCCHHHHHHHHhhc---------------------CcEEEEEcCCcEEEECHHH
Confidence 6110 0124568999999999999999999998877 8999999658999999999
Q ss_pred cEEEecccCCeeEEEEEEEecCCceeechhhhcceEEEEECCCCEEEEEeCCCC
Q 044471 384 YLIQQNSVGGTAVWCIGIQKIQGQTILGDLVLKDKIFVYDLAGQRIGWSNYDCS 437 (493)
Q Consensus 384 y~~~~~~~~~~~~~cl~i~~~~~~~ILG~~fl~~~yvvfD~~~~~igfA~~~c~ 437 (493)
|+++.. ...||+++...++.+|||++|||++|+|||++++|||||+++|.
T Consensus 277 y~~~~~----~~~c~~~~~~~~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 277 YLYKKE----SFWCKGGEKSVSNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred hccccC----CceEEEEEecCCCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 998743 23588888766688999999999999999999999999999994
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.2e-55 Score=441.54 Aligned_cols=297 Identities=28% Similarity=0.512 Sum_probs=254.5
Q ss_pred ccceeEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCCC--CCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCC
Q 044471 82 FVVGLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNG--CPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTA 159 (493)
Q Consensus 82 ~~~~~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~~--C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~ 159 (493)
+.+.+|+++|+||||||++.|++||||+++||+|..|.. |..+ +.|||++|+|++
T Consensus 6 ~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~-------~~f~~~~Sst~~---------------- 62 (317)
T cd05478 6 YLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNH-------NRFNPRQSSTYQ---------------- 62 (317)
T ss_pred ccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCccccccc-------CcCCCCCCccee----------------
Confidence 557899999999999999999999999999999999974 6555 899999999997
Q ss_pred CCCCCCCCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCCCC
Q 044471 160 DSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSM 239 (493)
Q Consensus 160 ~~~c~~~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~~~ 239 (493)
...+.|.+.|++|+ +.|.+++|+|++++.. +.++.|||++.+.+.+. .....+||||||++..
T Consensus 63 -------~~~~~~~~~yg~gs-~~G~~~~D~v~ig~~~--------i~~~~fg~~~~~~~~~~-~~~~~dGilGLg~~~~ 125 (317)
T cd05478 63 -------STGQPLSIQYGTGS-MTGILGYDTVQVGGIS--------DTNQIFGLSETEPGSFF-YYAPFDGILGLAYPSI 125 (317)
T ss_pred -------eCCcEEEEEECCce-EEEEEeeeEEEECCEE--------ECCEEEEEEEecCcccc-ccccccceeeeccchh
Confidence 34578999999999 6999999999998654 56789999988766432 2335799999998754
Q ss_pred ------cHHHHHHhCCCCC-cceEEeecCCCCCcceEEeCCCC----CCCeEEecCCCCCCeeeEEEeEEEEcCEEeecC
Q 044471 240 ------SVISQLSSQGLTP-RVFSHCLKGDSNGGGILVLGEIV----EPNIVYSPLVPSQPHYNLNLQSISVNGQTLSID 308 (493)
Q Consensus 240 ------s~~~qL~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d----~~~~~~~pl~~~~~~y~v~l~~i~v~~~~~~~~ 308 (493)
+++++|++||+|+ ++||+||.+++..+|.|+||++| +++++|+|+. ...+|.|.+++++|+++.+..
T Consensus 126 s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~-~~~~w~v~l~~v~v~g~~~~~- 203 (317)
T cd05478 126 ASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVT-AETYWQITVDSVTINGQVVAC- 203 (317)
T ss_pred cccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECC-CCcEEEEEeeEEEECCEEEcc-
Confidence 4899999999996 79999999875567999999998 4789999997 578999999999999998753
Q ss_pred CCcccccCCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCCcEEEecCcccEEEe
Q 044471 309 PSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGASLILNAQEYLIQQ 388 (493)
Q Consensus 309 ~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~p~~y~~~~ 388 (493)
..+..+||||||+++++|++++++|.+++.+.... ...+.++|.....+|+|+|+| +|++++|+|++|+.+.
T Consensus 204 ------~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~~-~~~~~~~C~~~~~~P~~~f~f-~g~~~~i~~~~y~~~~ 275 (317)
T cd05478 204 ------SGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQNQ-NGEMVVNCSSISSMPDVVFTI-NGVQYPLPPSAYILQD 275 (317)
T ss_pred ------CCCCEEEECCCchhhhCCHHHHHHHHHHhCCcccc-CCcEEeCCcCcccCCcEEEEE-CCEEEEECHHHheecC
Confidence 23457999999999999999999999999765432 345677898777899999999 8899999999999863
Q ss_pred cccCCeeEEEEEEEecC--CceeechhhhcceEEEEECCCCEEEEEe
Q 044471 389 NSVGGTAVWCIGIQKIQ--GQTILGDLVLKDKIFVYDLAGQRIGWSN 433 (493)
Q Consensus 389 ~~~~~~~~~cl~i~~~~--~~~ILG~~fl~~~yvvfD~~~~~igfA~ 433 (493)
.+.|.++|+..+ +.||||++|||++|+|||++++|||||+
T Consensus 276 -----~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 276 -----QGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred -----CCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 345667888765 6799999999999999999999999996
No 7
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=2.7e-55 Score=438.87 Aligned_cols=295 Identities=29% Similarity=0.506 Sum_probs=248.2
Q ss_pred EEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCC--CCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCCCCCCC
Q 044471 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN--GCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTADSGCS 164 (493)
Q Consensus 87 Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~--~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~~~~c~ 164 (493)
|+++|+||||||+++|+|||||+++||+|..|. .|..+ +.|||++|+|++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~-------~~y~~~~SsT~~--------------------- 52 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKH-------NRFQPSESSTYV--------------------- 52 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCcc-------ceECCCCCcccc---------------------
Confidence 899999999999999999999999999999997 58766 899999999997
Q ss_pred CCCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCCCCc----
Q 044471 165 SESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMS---- 240 (493)
Q Consensus 165 ~~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~~~s---- 240 (493)
...|.|++.|++|+ +.|.+++|+|++++.. +.++.|||+..+.+... .....+||||||++..+
T Consensus 53 --~~~~~~~i~Yg~g~-~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~-~~~~~dGilGLg~~~~s~~~~ 120 (316)
T cd05486 53 --SNGEAFSIQYGTGS-LTGIIGIDQVTVEGIT--------VQNQQFAESVSEPGSTF-QDSEFDGILGLAYPSLAVDGV 120 (316)
T ss_pred --cCCcEEEEEeCCcE-EEEEeeecEEEECCEE--------EcCEEEEEeeccCcccc-cccccceEeccCchhhccCCC
Confidence 45689999999998 6999999999998643 56789999987765321 23467999999987654
Q ss_pred --HHHHHHhCCCCC-cceEEeecCCC--CCcceEEeCCCCC----CCeEEecCCCCCCeeeEEEeEEEEcCEEeecCCCc
Q 044471 241 --VISQLSSQGLTP-RVFSHCLKGDS--NGGGILVLGEIVE----PNIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSA 311 (493)
Q Consensus 241 --~~~qL~~~g~i~-~~FS~~l~~~~--~~~G~l~fGg~d~----~~~~~~pl~~~~~~y~v~l~~i~v~~~~~~~~~~~ 311 (493)
++++|++||+|+ ++||+||.+.. ..+|.|+||++|+ +++.|+|+. +..+|.|++++|+|+++.+..
T Consensus 121 ~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~-~~~~w~v~l~~i~v~g~~~~~---- 195 (316)
T cd05486 121 TPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVT-VQGYWQIQLDNIQVGGTVIFC---- 195 (316)
T ss_pred CCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECC-CceEEEEEeeEEEEecceEec----
Confidence 689999999996 79999998642 2479999999984 689999997 578999999999999987642
Q ss_pred ccccCCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCCcEEEecCcccEEEeccc
Q 044471 312 FSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGASLILNAQEYLIQQNSV 391 (493)
Q Consensus 312 ~~~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~p~~y~~~~~~~ 391 (493)
.....+||||||+++++|+++++++.+++++.. ....+.++|+....+|+|+|+| +|+.++|+|++|++....
T Consensus 196 ---~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~--~~~~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~- 268 (316)
T cd05486 196 ---SDGCQAIVDTGTSLITGPSGDIKQLQNYIGATA--TDGEYGVDCSTLSLMPSVTFTI-NGIPYSLSPQAYTLEDQS- 268 (316)
T ss_pred ---CCCCEEEECCCcchhhcCHHHHHHHHHHhCCcc--cCCcEEEeccccccCCCEEEEE-CCEEEEeCHHHeEEeccc-
Confidence 234579999999999999999999998886542 2244667887767899999999 889999999999987432
Q ss_pred CCeeEEEEEEEecC------CceeechhhhcceEEEEECCCCEEEEEe
Q 044471 392 GGTAVWCIGIQKIQ------GQTILGDLVLKDKIFVYDLAGQRIGWSN 433 (493)
Q Consensus 392 ~~~~~~cl~i~~~~------~~~ILG~~fl~~~yvvfD~~~~~igfA~ 433 (493)
++...|.++|+..+ +.||||++|||++|+|||++++|||||+
T Consensus 269 ~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 269 DGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 23456667887642 4699999999999999999999999996
No 8
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.2e-54 Score=434.04 Aligned_cols=290 Identities=28% Similarity=0.497 Sum_probs=242.4
Q ss_pred ccceeEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCC---CCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCC
Q 044471 82 FVVGLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN---GCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNT 158 (493)
Q Consensus 82 ~~~~~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~---~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~ 158 (493)
+.+.+|+++|+||||||+++|++||||+++||+|..|. .|..+ +.|||++|+|++
T Consensus 6 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~-------~~y~~~~SsT~~--------------- 63 (317)
T cd06098 6 YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFH-------SKYKSSKSSTYK--------------- 63 (317)
T ss_pred cCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccccc-------CcCCcccCCCcc---------------
Confidence 56789999999999999999999999999999999996 68776 899999999997
Q ss_pred CCCCCCCCCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCCC
Q 044471 159 ADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQS 238 (493)
Q Consensus 159 ~~~~c~~~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~~ 238 (493)
...+.+.+.|++|+ +.|.+++|+|++++.. +.++.||+++.+.+. .+.....+||||||++.
T Consensus 64 --------~~~~~~~i~Yg~G~-~~G~~~~D~v~ig~~~--------v~~~~f~~~~~~~~~-~~~~~~~dGilGLg~~~ 125 (317)
T cd06098 64 --------KNGTSASIQYGTGS-ISGFFSQDSVTVGDLV--------VKNQVFIEATKEPGL-TFLLAKFDGILGLGFQE 125 (317)
T ss_pred --------cCCCEEEEEcCCce-EEEEEEeeEEEECCEE--------ECCEEEEEEEecCCc-cccccccceeccccccc
Confidence 34578999999998 5999999999998643 567899999876542 12245679999999875
Q ss_pred Cc------HHHHHHhCCCCC-cceEEeecCCC--CCcceEEeCCCCC----CCeEEecCCCCCCeeeEEEeEEEEcCEEe
Q 044471 239 MS------VISQLSSQGLTP-RVFSHCLKGDS--NGGGILVLGEIVE----PNIVYSPLVPSQPHYNLNLQSISVNGQTL 305 (493)
Q Consensus 239 ~s------~~~qL~~~g~i~-~~FS~~l~~~~--~~~G~l~fGg~d~----~~~~~~pl~~~~~~y~v~l~~i~v~~~~~ 305 (493)
.+ ++.+|++||+|+ ++||+||.+.. ..+|.|+||++|+ ++++|+|+. ...+|.|++++|+|+++.+
T Consensus 126 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~ 204 (317)
T cd06098 126 ISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVT-RKGYWQFEMGDVLIGGKST 204 (317)
T ss_pred hhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecC-cCcEEEEEeCeEEECCEEe
Confidence 43 678999999996 79999998642 3579999999983 689999997 5689999999999999886
Q ss_pred ecCCCcccccCCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCCcEEEecCcccE
Q 044471 306 SIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGASLILNAQEYL 385 (493)
Q Consensus 306 ~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~p~~y~ 385 (493)
..+. ....+||||||+++++|+++++++. +..+|.....+|+|+|+| +|..++|+|++|+
T Consensus 205 ~~~~------~~~~aivDTGTs~~~lP~~~~~~i~-------------~~~~C~~~~~~P~i~f~f-~g~~~~l~~~~yi 264 (317)
T cd06098 205 GFCA------GGCAAIADSGTSLLAGPTTIVTQIN-------------SAVDCNSLSSMPNVSFTI-GGKTFELTPEQYI 264 (317)
T ss_pred eecC------CCcEEEEecCCcceeCCHHHHHhhh-------------ccCCccccccCCcEEEEE-CCEEEEEChHHeE
Confidence 5432 3457999999999999998776653 345787667899999999 8899999999999
Q ss_pred EEecccCCeeEEEEEEEecC------CceeechhhhcceEEEEECCCCEEEEEe
Q 044471 386 IQQNSVGGTAVWCIGIQKIQ------GQTILGDLVLKDKIFVYDLAGQRIGWSN 433 (493)
Q Consensus 386 ~~~~~~~~~~~~cl~i~~~~------~~~ILG~~fl~~~yvvfD~~~~~igfA~ 433 (493)
++... +....|.++|+..+ +.||||++|||++|+|||++++|||||+
T Consensus 265 ~~~~~-~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 265 LKVGE-GAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred EeecC-CCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 87543 22345667787532 4799999999999999999999999995
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.3e-54 Score=432.63 Aligned_cols=296 Identities=31% Similarity=0.543 Sum_probs=251.9
Q ss_pred eeEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCC--CCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCCCCC
Q 044471 85 GLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN--GCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTADSG 162 (493)
Q Consensus 85 ~~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~--~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~~~~ 162 (493)
..|+++|+||||||++.|+|||||+++||+|..|. .|..+ +.|||++|+|++
T Consensus 2 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~-------~~f~~~~SsT~~------------------- 55 (318)
T cd05477 2 MSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNH-------TKFNPSQSSTYS------------------- 55 (318)
T ss_pred cEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCcccccc-------CCCCcccCCCce-------------------
Confidence 68999999999999999999999999999999997 47765 899999999997
Q ss_pred CCCCCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCCC----
Q 044471 163 CSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQS---- 238 (493)
Q Consensus 163 c~~~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~~---- 238 (493)
...|.|++.|++|+ +.|.+++|+|++++.. +.++.|||++...+.. +.....+||||||++.
T Consensus 56 ----~~~~~~~~~Yg~Gs-~~G~~~~D~i~~g~~~--------i~~~~Fg~~~~~~~~~-~~~~~~~GilGLg~~~~s~~ 121 (318)
T cd05477 56 ----TNGETFSLQYGSGS-LTGIFGYDTVTVQGII--------ITNQEFGLSETEPGTN-FVYAQFDGILGLAYPSISAG 121 (318)
T ss_pred ----ECCcEEEEEECCcE-EEEEEEeeEEEECCEE--------EcCEEEEEEEeccccc-ccccceeeEeecCccccccc
Confidence 45689999999998 5999999999998654 5679999999865521 1234579999999853
Q ss_pred --CcHHHHHHhCCCCC-cceEEeecCCC-CCcceEEeCCCC----CCCeEEecCCCCCCeeeEEEeEEEEcCEEeecCCC
Q 044471 239 --MSVISQLSSQGLTP-RVFSHCLKGDS-NGGGILVLGEIV----EPNIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPS 310 (493)
Q Consensus 239 --~s~~~qL~~~g~i~-~~FS~~l~~~~-~~~G~l~fGg~d----~~~~~~~pl~~~~~~y~v~l~~i~v~~~~~~~~~~ 310 (493)
.++++||+++|.|+ ++||+||.++. ..+|.|+||++| .+++.|+|+. ...+|.|++++|.|+++.+.+.
T Consensus 122 ~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~-- 198 (318)
T cd05477 122 GATTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVT-SETYWQIGIQGFQINGQATGWC-- 198 (318)
T ss_pred CCCCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecC-CceEEEEEeeEEEECCEEeccc--
Confidence 46899999999996 89999998752 346999999998 3689999997 5789999999999999887532
Q ss_pred cccccCCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCCcEEEecCcccEEEecc
Q 044471 311 AFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGASLILNAQEYLIQQNS 390 (493)
Q Consensus 311 ~~~~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~p~~y~~~~~~ 390 (493)
..+..+||||||+++++|++++++|++++.++... ...+..+|+....+|+|+|+| +|+++.|+|++|+.+.
T Consensus 199 ----~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~-~~~~~~~C~~~~~~p~l~~~f-~g~~~~v~~~~y~~~~-- 270 (318)
T cd05477 199 ----SQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQ-YGQYVVNCNNIQNLPTLTFTI-NGVSFPLPPSAYILQN-- 270 (318)
T ss_pred ----CCCceeeECCCCccEECCHHHHHHHHHHhCCcccc-CCCEEEeCCccccCCcEEEEE-CCEEEEECHHHeEecC--
Confidence 23457999999999999999999999999876543 345678898777899999999 7899999999999863
Q ss_pred cCCeeEEEEEEEecC-------CceeechhhhcceEEEEECCCCEEEEEeC
Q 044471 391 VGGTAVWCIGIQKIQ-------GQTILGDLVLKDKIFVYDLAGQRIGWSNY 434 (493)
Q Consensus 391 ~~~~~~~cl~i~~~~-------~~~ILG~~fl~~~yvvfD~~~~~igfA~~ 434 (493)
.+.|.++|++.. +.||||++|||++|+|||++++|||||++
T Consensus 271 ---~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 271 ---NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ---CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 346778987531 46999999999999999999999999985
No 10
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2e-54 Score=434.34 Aligned_cols=300 Identities=27% Similarity=0.482 Sum_probs=251.8
Q ss_pred ccceeEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCCC----CCCCCCCcccCCcCCCCCCCccceeccCCccccCCCC
Q 044471 82 FVVGLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNG----CPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLN 157 (493)
Q Consensus 82 ~~~~~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~~----C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~ 157 (493)
+.+.+|+++|+||||+|+++|++||||+++||+|..|.. |..+ +.|||++|+|++
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~-------~~y~~~~SsT~~-------------- 62 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTH-------NLYDASDSSTYK-------------- 62 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhccc-------CcCCCCCCeeee--------------
Confidence 567899999999999999999999999999999988874 5555 899999999997
Q ss_pred CCCCCCCCCCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCC
Q 044471 158 TADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQ 237 (493)
Q Consensus 158 ~~~~~c~~~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~ 237 (493)
...|.|++.|++|+ +.|.+++|+|++++.. + ++.||++..... ..+.....+||||||++
T Consensus 63 ---------~~~~~~~~~Yg~g~-~~G~~~~D~v~~g~~~--------~-~~~fg~~~~~~~-~~~~~~~~dGilGLg~~ 122 (326)
T cd05487 63 ---------ENGTEFTIHYASGT-VKGFLSQDIVTVGGIP--------V-TQMFGEVTALPA-IPFMLAKFDGVLGMGYP 122 (326)
T ss_pred ---------ECCEEEEEEeCCce-EEEEEeeeEEEECCEE--------e-eEEEEEEEeccC-CccceeecceEEecCCh
Confidence 35689999999998 6999999999998643 2 367999887542 11223457999999987
Q ss_pred CC------cHHHHHHhCCCCC-cceEEeecCCC--CCcceEEeCCCC----CCCeEEecCCCCCCeeeEEEeEEEEcCEE
Q 044471 238 SM------SVISQLSSQGLTP-RVFSHCLKGDS--NGGGILVLGEIV----EPNIVYSPLVPSQPHYNLNLQSISVNGQT 304 (493)
Q Consensus 238 ~~------s~~~qL~~~g~i~-~~FS~~l~~~~--~~~G~l~fGg~d----~~~~~~~pl~~~~~~y~v~l~~i~v~~~~ 304 (493)
.. +++++|++||.|+ ++||+||.+.+ ..+|.|+||++| +++++|+|+. ...+|+|+++++.|+++.
T Consensus 123 ~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~-~~~~w~v~l~~i~vg~~~ 201 (326)
T cd05487 123 KQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTS-KTGFWQIQMKGVSVGSST 201 (326)
T ss_pred hhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECC-cCceEEEEecEEEECCEE
Confidence 54 4788999999996 79999998753 357999999998 4789999996 578999999999999987
Q ss_pred eecCCCcccccCCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCCcEEEecCccc
Q 044471 305 LSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGASLILNAQEY 384 (493)
Q Consensus 305 ~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~p~~y 384 (493)
+.. ..+..++|||||++++||+++++++++++++... ...|..+|+....+|+|+|+| |+.+++|++++|
T Consensus 202 ~~~-------~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~--~~~y~~~C~~~~~~P~i~f~f-gg~~~~v~~~~y 271 (326)
T cd05487 202 LLC-------EDGCTAVVDTGASFISGPTSSISKLMEALGAKER--LGDYVVKCNEVPTLPDISFHL-GGKEYTLSSSDY 271 (326)
T ss_pred Eec-------CCCCEEEECCCccchhCcHHHHHHHHHHhCCccc--CCCEEEeccccCCCCCEEEEE-CCEEEEeCHHHh
Confidence 642 2346799999999999999999999999976644 345678898777899999999 889999999999
Q ss_pred EEEecccCCeeEEEEEEEecC------CceeechhhhcceEEEEECCCCEEEEEeC
Q 044471 385 LIQQNSVGGTAVWCIGIQKIQ------GQTILGDLVLKDKIFVYDLAGQRIGWSNY 434 (493)
Q Consensus 385 ~~~~~~~~~~~~~cl~i~~~~------~~~ILG~~fl~~~yvvfD~~~~~igfA~~ 434 (493)
+++... .+...|.++|+..+ +.||||++|||++|+|||++++|||||++
T Consensus 272 i~~~~~-~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 272 VLQDSD-FSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred EEeccC-CCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 997543 23456778888632 57999999999999999999999999985
No 11
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.7e-54 Score=433.56 Aligned_cols=301 Identities=30% Similarity=0.495 Sum_probs=252.4
Q ss_pred cccceeEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCC----CCCCCCCCcccCCcCCCCCCCccceeccCCccccCCC
Q 044471 81 PFVVGLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN----GCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGL 156 (493)
Q Consensus 81 ~~~~~~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~----~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~ 156 (493)
.+.+.+|+++|+||||+|++.|++||||+++||+|..|. .|..+ +.|||++|+|++
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~-------~~y~~~~Sst~~------------- 65 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLH-------NKYDSTKSSTYK------------- 65 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCC-------CeECCcCCCCeE-------------
Confidence 366799999999999999999999999999999999997 45544 789999999997
Q ss_pred CCCCCCCCCCCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCC
Q 044471 157 NTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQ 236 (493)
Q Consensus 157 ~~~~~~c~~~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~ 236 (493)
...|.|.+.|++|+ +.|.+++|++++++.. +.++.|||+..+.+. .+.....+||||||+
T Consensus 66 ----------~~~~~~~i~Y~~g~-~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~-~~~~~~~~GilGLg~ 125 (329)
T cd05485 66 ----------KNGTEFAIQYGSGS-LSGFLSTDTVSVGGVS--------VKGQTFAEAINEPGL-TFVAAKFDGILGMGY 125 (329)
T ss_pred ----------ECCeEEEEEECCce-EEEEEecCcEEECCEE--------ECCEEEEEEEecCCc-cccccccceEEEcCC
Confidence 45689999999998 6999999999998654 467899999877652 223456799999999
Q ss_pred CCCc------HHHHHHhCCCCC-cceEEeecCCCC--CcceEEeCCCC----CCCeEEecCCCCCCeeeEEEeEEEEcCE
Q 044471 237 QSMS------VISQLSSQGLTP-RVFSHCLKGDSN--GGGILVLGEIV----EPNIVYSPLVPSQPHYNLNLQSISVNGQ 303 (493)
Q Consensus 237 ~~~s------~~~qL~~~g~i~-~~FS~~l~~~~~--~~G~l~fGg~d----~~~~~~~pl~~~~~~y~v~l~~i~v~~~ 303 (493)
+..+ ++.+|++||+|+ ++||+||.+... .+|.|+||++| .++++|+|+. ...+|.|+++++.++++
T Consensus 126 ~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~~~~i~v~~~ 204 (329)
T cd05485 126 SSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVT-RKGYWQFKMDSVSVGEG 204 (329)
T ss_pred ccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcC-CceEEEEEeeEEEECCe
Confidence 8654 578999999996 799999986432 46999999998 3689999997 57899999999999987
Q ss_pred EeecCCCcccccCCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCCcEEEecCcc
Q 044471 304 TLSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGASLILNAQE 383 (493)
Q Consensus 304 ~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~p~~ 383 (493)
.+. ..+..+||||||+++++|++++++|.+++++.... ...|.++|.....+|+|+|+| |++++.|+|++
T Consensus 205 ~~~--------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~-~~~~~~~C~~~~~~p~i~f~f-gg~~~~i~~~~ 274 (329)
T cd05485 205 EFC--------SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAKPII-GGEYMVNCSAIPSLPDITFVL-GGKSFSLTGKD 274 (329)
T ss_pred eec--------CCCcEEEEccCCcceeCCHHHHHHHHHHhCCcccc-CCcEEEeccccccCCcEEEEE-CCEEeEEChHH
Confidence 653 23457999999999999999999999998765322 245677898777889999999 88999999999
Q ss_pred cEEEecccCCeeEEEEEEEecC------CceeechhhhcceEEEEECCCCEEEEEe
Q 044471 384 YLIQQNSVGGTAVWCIGIQKIQ------GQTILGDLVLKDKIFVYDLAGQRIGWSN 433 (493)
Q Consensus 384 y~~~~~~~~~~~~~cl~i~~~~------~~~ILG~~fl~~~yvvfD~~~~~igfA~ 433 (493)
|+++... .+...|.++++..+ +.||||++|||++|+|||++++|||||+
T Consensus 275 yi~~~~~-~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 275 YVLKVTQ-MGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred eEEEecC-CCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 9998643 23456667788532 5799999999999999999999999985
No 12
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=6.7e-54 Score=429.44 Aligned_cols=296 Identities=28% Similarity=0.487 Sum_probs=250.2
Q ss_pred ccceeEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCC--CCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCC
Q 044471 82 FVVGLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN--GCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTA 159 (493)
Q Consensus 82 ~~~~~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~--~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~ 159 (493)
+.+.+|+++|+||||+|++.|+|||||+++||+|..|. .|..+ +.|+|++|+|++
T Consensus 6 ~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~-------~~y~~~~Sst~~---------------- 62 (320)
T cd05488 6 YLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLH-------SKYDSSASSTYK---------------- 62 (320)
T ss_pred cCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCc-------ceECCCCCccee----------------
Confidence 45689999999999999999999999999999999997 58766 799999999997
Q ss_pred CCCCCCCCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCCCC
Q 044471 160 DSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSM 239 (493)
Q Consensus 160 ~~~c~~~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~~~ 239 (493)
.+.|.+.+.|++|+ ++|.+++|++++++.. +.++.|||++.+.+.. +.....+||||||++..
T Consensus 63 -------~~~~~~~~~y~~g~-~~G~~~~D~v~ig~~~--------~~~~~f~~a~~~~g~~-~~~~~~dGilGLg~~~~ 125 (320)
T cd05488 63 -------ANGTEFKIQYGSGS-LEGFVSQDTLSIGDLT--------IKKQDFAEATSEPGLA-FAFGKFDGILGLAYDTI 125 (320)
T ss_pred -------eCCCEEEEEECCce-EEEEEEEeEEEECCEE--------ECCEEEEEEecCCCcc-eeeeeeceEEecCCccc
Confidence 45689999999998 6999999999998654 5678999998776532 22345799999999765
Q ss_pred c------HHHHHHhCCCCC-cceEEeecCCCCCcceEEeCCCC----CCCeEEecCCCCCCeeeEEEeEEEEcCEEeecC
Q 044471 240 S------VISQLSSQGLTP-RVFSHCLKGDSNGGGILVLGEIV----EPNIVYSPLVPSQPHYNLNLQSISVNGQTLSID 308 (493)
Q Consensus 240 s------~~~qL~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d----~~~~~~~pl~~~~~~y~v~l~~i~v~~~~~~~~ 308 (493)
+ .+.+|++||+|+ ++||+||.+....+|.|+||++| ++++.|+|++ ...+|.|++++|+|+++.+..
T Consensus 126 s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~vg~~~~~~- 203 (320)
T cd05488 126 SVNKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVR-RKAYWEVELEKIGLGDEELEL- 203 (320)
T ss_pred cccCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCC-cCcEEEEEeCeEEECCEEecc-
Confidence 4 456899999996 79999999765568999999998 3689999997 568999999999999987753
Q ss_pred CCcccccCCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCCcEEEecCcccEEEe
Q 044471 309 PSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGASLILNAQEYLIQQ 388 (493)
Q Consensus 309 ~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~p~~y~~~~ 388 (493)
.+..++|||||++++||+++++++.+++++.... ...+..+|.+...+|+|+|+| +|++++|+|++|+++.
T Consensus 204 -------~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~~-~~~~~~~C~~~~~~P~i~f~f-~g~~~~i~~~~y~~~~ 274 (320)
T cd05488 204 -------ENTGAAIDTGTSLIALPSDLAEMLNAEIGAKKSW-NGQYTVDCSKVDSLPDLTFNF-DGYNFTLGPFDYTLEV 274 (320)
T ss_pred -------CCCeEEEcCCcccccCCHHHHHHHHHHhCCcccc-CCcEEeeccccccCCCEEEEE-CCEEEEECHHHheecC
Confidence 2357999999999999999999999999765432 344667898777899999999 7899999999999853
Q ss_pred cccCCeeEEEEEEEecC------CceeechhhhcceEEEEECCCCEEEEEe
Q 044471 389 NSVGGTAVWCIGIQKIQ------GQTILGDLVLKDKIFVYDLAGQRIGWSN 433 (493)
Q Consensus 389 ~~~~~~~~~cl~i~~~~------~~~ILG~~fl~~~yvvfD~~~~~igfA~ 433 (493)
.+.|.+.+...+ +.||||++|||++|+|||++++|||||+
T Consensus 275 -----~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 275 -----SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred -----CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 235656776532 4699999999999999999999999995
No 13
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.2e-53 Score=440.13 Aligned_cols=306 Identities=23% Similarity=0.410 Sum_probs=249.4
Q ss_pred eeeeccCCCccccceeEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCC--CCCCCCCCcccCCcCCCCCCCccceeccC
Q 044471 71 VDFSVEGTYDPFVVGLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN--GCPGTSGLQIQLNFFDPSSSSTASLVRCS 148 (493)
Q Consensus 71 ~~~~~~~~~~~~~~~~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~--~C~~~~~~~~~~~~y~p~~SsT~~~v~C~ 148 (493)
.++++.+ +.+.+|+++|+||||||+|.|++||||+++||+|..|. .|..+ +.|||++|+|++
T Consensus 128 ~~v~L~n----~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~-------~~yd~s~SsT~~----- 191 (453)
T PTZ00147 128 DNVELKD----LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETK-------NLYDSSKSKTYE----- 191 (453)
T ss_pred Ceeeccc----cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCC-------CccCCccCcceE-----
Confidence 3455543 55689999999999999999999999999999999997 47665 899999999997
Q ss_pred CccccCCCCCCCCCCCCCCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCC-CCCCCC
Q 044471 149 DQRCSLGLNTADSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDL-TKSDRA 227 (493)
Q Consensus 149 ~~~C~~~~~~~~~~c~~~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~-~~~~~~ 227 (493)
..++.|++.|++|+ +.|.+++|+|++++.. +. ..|+|+....+.. ......
T Consensus 192 ------------------~~~~~f~i~Yg~Gs-vsG~~~~DtVtiG~~~--------v~-~qF~~~~~~~~f~~~~~~~~ 243 (453)
T PTZ00147 192 ------------------KDGTKVEMNYVSGT-VSGFFSKDLVTIGNLS--------VP-YKFIEVTDTNGFEPFYTESD 243 (453)
T ss_pred ------------------ECCCEEEEEeCCCC-EEEEEEEEEEEECCEE--------EE-EEEEEEEeccCccccccccc
Confidence 34578999999998 6999999999998643 23 4688887665421 123446
Q ss_pred cceEEeeCCCCCc------HHHHHHhCCCCC-cceEEeecCCCCCcceEEeCCCC----CCCeEEecCCCCCCeeeEEEe
Q 044471 228 VDGIFGFGQQSMS------VISQLSSQGLTP-RVFSHCLKGDSNGGGILVLGEIV----EPNIVYSPLVPSQPHYNLNLQ 296 (493)
Q Consensus 228 ~~GIlGLg~~~~s------~~~qL~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d----~~~~~~~pl~~~~~~y~v~l~ 296 (493)
.|||||||++..+ ++.+|++||+|+ ++||+||++.+...|.|+|||+| ++++.|+|+. +..+|.|.++
T Consensus 244 ~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~-~~~~W~V~l~ 322 (453)
T PTZ00147 244 FDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLN-HDLYWQVDLD 322 (453)
T ss_pred ccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcC-CCceEEEEEE
Confidence 7999999998654 678999999996 79999998765668999999999 4799999996 5779999998
Q ss_pred EEEEcCEEeecCCCcccccCCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCCcE
Q 044471 297 SISVNGQTLSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGAS 376 (493)
Q Consensus 297 ~i~v~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~~ 376 (493)
+.+++... ....+||||||+++++|+++++++.+++++........+..+|+. ..+|+|+|+| +|..
T Consensus 323 -~~vg~~~~----------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~~~~~~y~~~C~~-~~lP~~~f~f-~g~~ 389 (453)
T PTZ00147 323 -VHFGNVSS----------EKANVIVDSGTSVITVPTEFLNKFVESLDVFKVPFLPLYVTTCNN-TKLPTLEFRS-PNKV 389 (453)
T ss_pred -EEECCEec----------CceeEEECCCCchhcCCHHHHHHHHHHhCCeecCCCCeEEEeCCC-CCCCeEEEEE-CCEE
Confidence 47765431 345799999999999999999999999976432233345567864 5789999999 7899
Q ss_pred EEecCcccEEEecccCCeeEEEEEEEecC---CceeechhhhcceEEEEECCCCEEEEEeCC
Q 044471 377 LILNAQEYLIQQNSVGGTAVWCIGIQKIQ---GQTILGDLVLKDKIFVYDLAGQRIGWSNYD 435 (493)
Q Consensus 377 ~~l~p~~y~~~~~~~~~~~~~cl~i~~~~---~~~ILG~~fl~~~yvvfD~~~~~igfA~~~ 435 (493)
++|+|++|+.+... .+.+.|.+++++.+ +.||||++|||++|+|||++++|||||+++
T Consensus 390 ~~L~p~~yi~~~~~-~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 390 YTLEPEYYLQPIED-IGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEECHHHheecccc-CCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 99999999986432 23456667888754 579999999999999999999999999985
No 14
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=3.5e-53 Score=420.58 Aligned_cols=281 Identities=32% Similarity=0.593 Sum_probs=232.6
Q ss_pred eEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCCCCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCCCCCCCC
Q 044471 86 LYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTADSGCSS 165 (493)
Q Consensus 86 ~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~~~~c~~ 165 (493)
+|+++|.||||||++.|++||||+++||+|.+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 499999999999999999999999999987644
Q ss_pred CCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCCCCcHHHHH
Q 044471 166 ESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSVISQL 245 (493)
Q Consensus 166 ~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~qL 245 (493)
|.|.++|++|+.++|.+++|+|+|++.. .+.++.|||+..+++.+ ...+||||||+...+++.||
T Consensus 34 ----~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~-------~~~~~~Fg~~~~~~~~~----~~~~GilGLg~~~~s~~~ql 98 (299)
T cd05472 34 ----CLYQVSYGDGSYTTGDLATDTLTLGSSD-------VVPGFAFGCGHDNEGLF----GGAAGLLGLGRGKLSLPSQT 98 (299)
T ss_pred ----CeeeeEeCCCceEEEEEEEEEEEeCCCC-------ccCCEEEECCccCCCcc----CCCCEEEECCCCcchHHHHh
Confidence 3588999999988999999999998641 25679999999877643 25799999999999999998
Q ss_pred HhCCCCCcceEEeecCCC-CCcceEEeCCCCC--CCeEEecCCCC---CCeeeEEEeEEEEcCEEeecCCCcccccCCCc
Q 044471 246 SSQGLTPRVFSHCLKGDS-NGGGILVLGEIVE--PNIVYSPLVPS---QPHYNLNLQSISVNGQTLSIDPSAFSTSSNKG 319 (493)
Q Consensus 246 ~~~g~i~~~FS~~l~~~~-~~~G~l~fGg~d~--~~~~~~pl~~~---~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~ 319 (493)
..+ .+++||+||.+.. ..+|+|+||++|+ +++.|+|++.+ ..+|.|+|++|+|+++.+.+++.. .....
T Consensus 99 ~~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~---~~~~~ 173 (299)
T cd05472 99 ASS--YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS---FGAGG 173 (299)
T ss_pred hHh--hcCceEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc---cCCCC
Confidence 765 4589999998754 4579999999996 79999999854 368999999999999988654321 23568
Q ss_pred EEEeccCcceeccHHHHHHHHHHHHhhcccC---cccccc-CCC-----CcCccceEEEEecCCcEEEecCcccEEEecc
Q 044471 320 TIVDTGTTLAYLTEAAYDPLINAITSSVSQS---VRPVLT-KGN-----HTAIFPQISFNFAGGASLILNAQEYLIQQNS 390 (493)
Q Consensus 320 ~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~---~~~~~~-~~~-----~~~~~P~i~f~f~gg~~~~l~p~~y~~~~~~ 390 (493)
+||||||++++||+++|++|.+++.++.... ...+.. .|. ....+|+|+|+|.++.+++|+|++|+++..
T Consensus 174 ~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~- 252 (299)
T cd05472 174 VIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVD- 252 (299)
T ss_pred eEEeCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEec-
Confidence 9999999999999999999999998875421 111122 253 235799999999658999999999998432
Q ss_pred cCCeeEEEEEEEecC---CceeechhhhcceEEEEECCCCEEEEEeCCC
Q 044471 391 VGGTAVWCIGIQKIQ---GQTILGDLVLKDKIFVYDLAGQRIGWSNYDC 436 (493)
Q Consensus 391 ~~~~~~~cl~i~~~~---~~~ILG~~fl~~~yvvfD~~~~~igfA~~~c 436 (493)
..+.+|+++...+ +.+|||+.|||++|+|||++++|||||+.+|
T Consensus 253 --~~~~~C~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 253 --DSSQVCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred --CCCCEEEEEeCCCCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 1345789988763 6799999999999999999999999999999
No 15
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.5e-52 Score=431.24 Aligned_cols=299 Identities=22% Similarity=0.401 Sum_probs=243.8
Q ss_pred ccceeEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCC--CCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCC
Q 044471 82 FVVGLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCN--GCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTA 159 (493)
Q Consensus 82 ~~~~~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~--~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~ 159 (493)
+.+.+|+++|+||||+|++.|++||||+++||+|..|. .|..+ +.|||++|+|++
T Consensus 134 ~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~-------~~yd~s~SsT~~---------------- 190 (450)
T PTZ00013 134 VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIK-------NLYDSSKSKSYE---------------- 190 (450)
T ss_pred cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccC-------CCccCccCcccc----------------
Confidence 45679999999999999999999999999999999997 58766 899999999997
Q ss_pred CCCCCCCCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCC-CCCCCCCcceEEeeCCCC
Q 044471 160 DSGCSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGD-LTKSDRAVDGIFGFGQQS 238 (493)
Q Consensus 160 ~~~c~~~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~-~~~~~~~~~GIlGLg~~~ 238 (493)
..++.|.+.|++|+ +.|.+++|+|++++.. .. ..|+++....+. .......+|||||||++.
T Consensus 191 -------~~~~~~~i~YG~Gs-v~G~~~~Dtv~iG~~~--------~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~ 253 (450)
T PTZ00013 191 -------KDGTKVDITYGSGT-VKGFFSKDLVTLGHLS--------MP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKD 253 (450)
T ss_pred -------cCCcEEEEEECCce-EEEEEEEEEEEECCEE--------Ec-cEEEEEEeccccccceecccccceecccCCc
Confidence 45689999999998 6999999999998654 22 468887765321 111234579999999976
Q ss_pred C------cHHHHHHhCCCCC-cceEEeecCCCCCcceEEeCCCC----CCCeEEecCCCCCCeeeEEEeEEEEcCEEeec
Q 044471 239 M------SVISQLSSQGLTP-RVFSHCLKGDSNGGGILVLGEIV----EPNIVYSPLVPSQPHYNLNLQSISVNGQTLSI 307 (493)
Q Consensus 239 ~------s~~~qL~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d----~~~~~~~pl~~~~~~y~v~l~~i~v~~~~~~~ 307 (493)
. +++.+|++||+|+ ++||+||++.+..+|.|+|||+| ++++.|+|+. ...+|.|+++ +.++....
T Consensus 254 ~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~-~~~yW~I~l~-v~~G~~~~-- 329 (450)
T PTZ00013 254 LSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLN-HDLYWQIDLD-VHFGKQTM-- 329 (450)
T ss_pred cccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcC-cCceEEEEEE-EEECceec--
Confidence 5 3788999999997 69999998765568999999999 4789999997 5789999998 66654332
Q ss_pred CCCcccccCCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCCcEEEecCcccEEE
Q 044471 308 DPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGASLILNAQEYLIQ 387 (493)
Q Consensus 308 ~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~p~~y~~~ 387 (493)
....+|+||||+++++|+++++++.+++++........+..+|+. ..+|+|+|+| +|.+++|+|++|+.+
T Consensus 330 --------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~~~~~~y~~~C~~-~~lP~i~F~~-~g~~~~L~p~~Yi~~ 399 (450)
T PTZ00013 330 --------QKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDN-KEMPTLEFKS-ANNTYTLEPEYYMNP 399 (450)
T ss_pred --------cccceEECCCCccccCCHHHHHHHHHHhCCeecCCCCeEEeecCC-CCCCeEEEEE-CCEEEEECHHHheeh
Confidence 245799999999999999999999999876533333345667863 5789999999 789999999999976
Q ss_pred ecccCCeeEEEEEEEecC---CceeechhhhcceEEEEECCCCEEEEEeCC
Q 044471 388 QNSVGGTAVWCIGIQKIQ---GQTILGDLVLKDKIFVYDLAGQRIGWSNYD 435 (493)
Q Consensus 388 ~~~~~~~~~~cl~i~~~~---~~~ILG~~fl~~~yvvfD~~~~~igfA~~~ 435 (493)
.... +...|.+++++.+ +.||||++|||++|+|||++++|||||+++
T Consensus 400 ~~~~-~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 400 LLDV-DDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred hccC-CCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 3321 2345667887754 679999999999999999999999999874
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.5e-51 Score=419.58 Aligned_cols=314 Identities=25% Similarity=0.369 Sum_probs=241.6
Q ss_pred eEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCCCCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCCCCCCCC
Q 044471 86 LYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTADSGCSS 165 (493)
Q Consensus 86 ~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~~~~c~~ 165 (493)
.|+++|+||||+|+|.|+|||||+++||+|..|.. .+ +.|||++|+|++
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~--~~-------~~f~~~~SsT~~---------------------- 51 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPF--IH-------TYFHRELSSTYR---------------------- 51 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcCCCcc--cc-------ccCCchhCcCcc----------------------
Confidence 69999999999999999999999999999987732 23 789999999997
Q ss_pred CCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCCCC------
Q 044471 166 ESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSM------ 239 (493)
Q Consensus 166 ~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~~~------ 239 (493)
..+|.|+++|++|+ +.|.+++|+|++++.. +....+.|++.....+.+ ......|||||||++.+
T Consensus 52 -~~~~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~------~~~~~~~~~~~~~~~~~~-~~~~~~dGIlGLg~~~l~~~~~~ 122 (364)
T cd05473 52 -DLGKGVTVPYTQGS-WEGELGTDLVSIPKGP------NVTFRANIAAITESENFF-LNGSNWEGILGLAYAELARPDSS 122 (364)
T ss_pred -cCCceEEEEECcce-EEEEEEEEEEEECCCC------ccceEEeeEEEeccccce-ecccccceeeeecccccccCCCC
Confidence 45689999999998 5999999999998521 112223456665444322 12235799999998754
Q ss_pred --cHHHHHHhCCCCCcceEEeecC---------CCCCcceEEeCCCC----CCCeEEecCCCCCCeeeEEEeEEEEcCEE
Q 044471 240 --SVISQLSSQGLTPRVFSHCLKG---------DSNGGGILVLGEIV----EPNIVYSPLVPSQPHYNLNLQSISVNGQT 304 (493)
Q Consensus 240 --s~~~qL~~~g~i~~~FS~~l~~---------~~~~~G~l~fGg~d----~~~~~~~pl~~~~~~y~v~l~~i~v~~~~ 304 (493)
+++++|++|+.++++||+||.. ....+|.|+||++| .+++.|+|++ ...+|.|.+++|+|+++.
T Consensus 123 ~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~-~~~~~~v~l~~i~vg~~~ 201 (364)
T cd05473 123 VEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIR-EEWYYEVIILKLEVGGQS 201 (364)
T ss_pred CCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecC-cceeEEEEEEEEEECCEe
Confidence 4788999999887899998852 12247999999998 4689999997 567999999999999998
Q ss_pred eecCCCcccccCCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCc------cccccCCCCc-----CccceEEEEecC
Q 044471 305 LSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSV------RPVLTKGNHT-----AIFPQISFNFAG 373 (493)
Q Consensus 305 ~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~------~~~~~~~~~~-----~~~P~i~f~f~g 373 (493)
+.++...+ ....+||||||++++||+++|+++.+++.++..... ..+...|... ..+|+|+|+|.|
T Consensus 202 ~~~~~~~~---~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g 278 (364)
T cd05473 202 LNLDCKEY---NYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRD 278 (364)
T ss_pred cccccccc---cCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEcc
Confidence 87544322 124699999999999999999999999998754211 1123467542 258999999964
Q ss_pred C-----cEEEecCcccEEEecccCCeeEEEE--EEEecCCceeechhhhcceEEEEECCCCEEEEEeCCCCCCcceee
Q 044471 374 G-----ASLILNAQEYLIQQNSVGGTAVWCI--GIQKIQGQTILGDLVLKDKIFVYDLAGQRIGWSNYDCSMSVNVST 444 (493)
Q Consensus 374 g-----~~~~l~p~~y~~~~~~~~~~~~~cl--~i~~~~~~~ILG~~fl~~~yvvfD~~~~~igfA~~~c~~~~~i~~ 444 (493)
. .+++|+|++|+......+ ....|+ ++....+.||||+.|||++|+|||++++|||||+.+|......++
T Consensus 279 ~~~~~~~~l~l~p~~Y~~~~~~~~-~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~~~~~ 355 (364)
T cd05473 279 ENSSQSFRITILPQLYLRPVEDHG-TQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHDGFRT 355 (364)
T ss_pred CCCCceEEEEECHHHhhhhhccCC-CcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEecccccccCcce
Confidence 2 478999999998643211 223454 443333679999999999999999999999999999987554444
No 17
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2.9e-51 Score=401.09 Aligned_cols=260 Identities=34% Similarity=0.760 Sum_probs=217.7
Q ss_pred eeEEEEEEeCCCCeEEEEEEecCCCeeEEeCC-CCCCCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCCCCCC
Q 044471 85 GLYYTKVQLGSPPREFHVQIDTGSDVLWVSCS-SCNGCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTADSGC 163 (493)
Q Consensus 85 ~~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~-~C~~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~~~~c 163 (493)
|+|+++|+||||||++.|++||||+++||+|. +|..|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------ 38 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------ 38 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC------------------------------------------
Confidence 47999999999999999999999999999984 56544
Q ss_pred CCCCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCCCCcHHH
Q 044471 164 SSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSVIS 243 (493)
Q Consensus 164 ~~~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ 243 (493)
.|.|+++|+||+.++|.+++|+|+++...+. ....++.|||+..+.+.+.......+||||||+...++++
T Consensus 39 -----~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~----~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ 109 (273)
T cd05475 39 -----QCDYEIEYADGGSSMGVLVTDIFSLKLTNGS----RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPS 109 (273)
T ss_pred -----cCccEeEeCCCCceEEEEEEEEEEEeecCCC----cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHH
Confidence 1679999998888999999999999753222 1256899999987766443344578999999999999999
Q ss_pred HHHhCCCCCcceEEeecCCCCCcceEEeCCCC--CCCeEEecCCCC--CCeeeEEEeEEEEcCEEeecCCCcccccCCCc
Q 044471 244 QLSSQGLTPRVFSHCLKGDSNGGGILVLGEIV--EPNIVYSPLVPS--QPHYNLNLQSISVNGQTLSIDPSAFSTSSNKG 319 (493)
Q Consensus 244 qL~~~g~i~~~FS~~l~~~~~~~G~l~fGg~d--~~~~~~~pl~~~--~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~ 319 (493)
||+++++|+++||+||.+ ..+|.|+||+.. .++++|+|+..+ ..+|.|++.+|+|+++... .....
T Consensus 110 ql~~~~~i~~~Fs~~l~~--~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--------~~~~~ 179 (273)
T cd05475 110 QLASQGIIKNVIGHCLSS--NGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--------GKGLE 179 (273)
T ss_pred HHHhcCCcCceEEEEccC--CCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--------CCCce
Confidence 999999998899999986 347899999654 368999999854 4799999999999998532 23467
Q ss_pred EEEeccCcceeccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCC---cEEEecCcccEEEecccCCeeE
Q 044471 320 TIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGG---ASLILNAQEYLIQQNSVGGTAV 396 (493)
Q Consensus 320 ~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg---~~~~l~p~~y~~~~~~~~~~~~ 396 (493)
+||||||++++||+++| +|+|+|+|.++ ++++|+|++|+++.. .+.
T Consensus 180 ~ivDTGTt~t~lp~~~y---------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~----~~~ 228 (273)
T cd05475 180 VVFDSGSSYTYFNAQAY---------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISE----KGN 228 (273)
T ss_pred EEEECCCceEEcCCccc---------------------------cccEEEEECCCCceeEEEeCCCceEEEcC----CCC
Confidence 99999999999999876 68999999543 799999999998742 235
Q ss_pred EEEEEEecC-----CceeechhhhcceEEEEECCCCEEEEEeCCC
Q 044471 397 WCIGIQKIQ-----GQTILGDLVLKDKIFVYDLAGQRIGWSNYDC 436 (493)
Q Consensus 397 ~cl~i~~~~-----~~~ILG~~fl~~~yvvfD~~~~~igfA~~~c 436 (493)
.|+++.... +.||||+.|||++|+|||++++|||||+++|
T Consensus 229 ~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 229 VCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 788887543 4799999999999999999999999999998
No 18
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=5.9e-51 Score=412.37 Aligned_cols=315 Identities=22% Similarity=0.381 Sum_probs=249.9
Q ss_pred eCCCCeE-EEEEEecCCCeeEEeCCCCCCCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCCC---------CC
Q 044471 93 LGSPPRE-FHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTAD---------SG 162 (493)
Q Consensus 93 iGTP~q~-~~v~lDTGSs~lWV~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~~---------~~ 162 (493)
+|||-.+ +.|++||||+++||+|.+ .+|+|++.++|+++.|.....+.. ..
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~-------------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~ 62 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA-------------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPG 62 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC-------------------CCcCCCCccCcCChhhccccccCCCccccCCCCCC
Confidence 5888778 999999999999999964 347899999999999986544321 24
Q ss_pred CCCCCCCceeEEE-cCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCCCCcH
Q 044471 163 CSSESNQCSYTFQ-YGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSV 241 (493)
Q Consensus 163 c~~~~~~~~~~~~-Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~ 241 (493)
|. ++.|.|... |++|+.+.|++++|+|+|+...+.......+.++.|||+..+.... ....+|||||||++.+|+
T Consensus 63 c~--~~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~--~~~~~dGIlGLg~~~lSl 138 (362)
T cd05489 63 CG--NNTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKG--LPPGAQGVAGLGRSPLSL 138 (362)
T ss_pred CC--CCcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccC--CccccccccccCCCccch
Confidence 53 456888765 7899889999999999998643322111236789999998753211 123479999999999999
Q ss_pred HHHHHhCCCCCcceEEeecCCCCCcceEEeCCCCC----------CCeEEecCCCC---CCeeeEEEeEEEEcCEEeecC
Q 044471 242 ISQLSSQGLTPRVFSHCLKGDSNGGGILVLGEIVE----------PNIVYSPLVPS---QPHYNLNLQSISVNGQTLSID 308 (493)
Q Consensus 242 ~~qL~~~g~i~~~FS~~l~~~~~~~G~l~fGg~d~----------~~~~~~pl~~~---~~~y~v~l~~i~v~~~~~~~~ 308 (493)
+.||..++..+++||+||.+....+|.|+||+.+. ++++|+||+.+ ..+|+|+|++|+||++.+.++
T Consensus 139 ~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~ 218 (362)
T cd05489 139 PAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLN 218 (362)
T ss_pred HHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCC
Confidence 99999887767899999987645689999999873 68999999864 369999999999999999877
Q ss_pred CCccc--ccCCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCccccc-----cCCCC---------cCccceEEEEec
Q 044471 309 PSAFS--TSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVL-----TKGNH---------TAIFPQISFNFA 372 (493)
Q Consensus 309 ~~~~~--~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~-----~~~~~---------~~~~P~i~f~f~ 372 (493)
+..+. .....++||||||++++||+++|++|.+++.+++........ ..|.. ...+|+|+|+|.
T Consensus 219 ~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~ 298 (362)
T cd05489 219 PTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLD 298 (362)
T ss_pred chhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEe
Confidence 65443 224568999999999999999999999999987653211100 12321 357999999997
Q ss_pred C-CcEEEecCcccEEEecccCCeeEEEEEEEecC----CceeechhhhcceEEEEECCCCEEEEEeC
Q 044471 373 G-GASLILNAQEYLIQQNSVGGTAVWCIGIQKIQ----GQTILGDLVLKDKIFVYDLAGQRIGWSNY 434 (493)
Q Consensus 373 g-g~~~~l~p~~y~~~~~~~~~~~~~cl~i~~~~----~~~ILG~~fl~~~yvvfD~~~~~igfA~~ 434 (493)
| |++++|+|++|+++.. .+..||+|.+.+ +.||||+.|||++|++||++++|||||+.
T Consensus 299 g~g~~~~l~~~ny~~~~~----~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 299 GGGVNWTIFGANSMVQVK----GGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred CCCeEEEEcCCceEEEcC----CCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 6 7999999999999853 246789998765 46899999999999999999999999974
No 19
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=4.9e-50 Score=393.81 Aligned_cols=264 Identities=28% Similarity=0.473 Sum_probs=222.6
Q ss_pred EEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCCCCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCCCCCCCCC
Q 044471 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTADSGCSSE 166 (493)
Q Consensus 87 Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~~~~c~~~ 166 (493)
|+++|+||||||++.|++||||+++||+|..|..|..+. ...||+++|+|++..
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~-----~~~y~~~~Sst~~~~--------------------- 54 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGG-----HKLYDPSKSSTAKLL--------------------- 54 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhcc-----CCcCCCccCccceec---------------------
Confidence 789999999999999999999999999999999886541 267999999999732
Q ss_pred CCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCCCC-------
Q 044471 167 SNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSM------- 239 (493)
Q Consensus 167 ~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~~~------- 239 (493)
..|.|.+.|++|+.+.|.+++|+|++++.. +.++.|||++..++.. ......+||||||++..
T Consensus 55 -~~~~~~i~Y~~G~~~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~-~~~~~~dGilGLg~~~~~~~~~~~ 124 (278)
T cd06097 55 -PGATWSISYGDGSSASGIVYTDTVSIGGVE--------VPNQAIELATAVSASF-FSDTASDGLLGLAFSSINTVQPPK 124 (278)
T ss_pred -CCcEEEEEeCCCCeEEEEEEEEEEEECCEE--------ECCeEEEEEeecCccc-cccccccceeeeccccccccccCC
Confidence 357899999999878999999999998654 5678999999876532 23456899999998754
Q ss_pred --cHHHHHHhCCCCCcceEEeecCCCCCcceEEeCCCC----CCCeEEecCCCCCCeeeEEEeEEEEcCEEeecCCCccc
Q 044471 240 --SVISQLSSQGLTPRVFSHCLKGDSNGGGILVLGEIV----EPNIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPSAFS 313 (493)
Q Consensus 240 --s~~~qL~~~g~i~~~FS~~l~~~~~~~G~l~fGg~d----~~~~~~~pl~~~~~~y~v~l~~i~v~~~~~~~~~~~~~ 313 (493)
+++++|.+++. +++||+||.+ ...|+|+|||+| .++++|+|++....+|.|++++|.|+++...
T Consensus 125 ~~~~~~~l~~~~~-~~~Fs~~l~~--~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~------- 194 (278)
T cd06097 125 QKTFFENALSSLD-APLFTADLRK--AAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW------- 194 (278)
T ss_pred CCCHHHHHHHhcc-CceEEEEecC--CCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-------
Confidence 46788998865 7899999986 347999999999 4799999998657899999999999987432
Q ss_pred ccCCCcEEEeccCcceeccHHHHHHHHHHH-HhhcccCccccccCCCCcCccceEEEEecCCcEEEecCcccEEEecccC
Q 044471 314 TSSNKGTIVDTGTTLAYLTEAAYDPLINAI-TSSVSQSVRPVLTKGNHTAIFPQISFNFAGGASLILNAQEYLIQQNSVG 392 (493)
Q Consensus 314 ~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i-~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~p~~y~~~~~~~~ 392 (493)
...+..++|||||+++++|+++++++.+++ ++.++.....|.++|+.. +|+|+|+|
T Consensus 195 ~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~~~~~~~~~~~~C~~~--~P~i~f~~--------------------- 251 (278)
T cd06097 195 SRSGFSAIADTGTTLILLPDAIVEAYYSQVPGAYYDSEYGGWVFPCDTT--LPDLSFAV--------------------- 251 (278)
T ss_pred ecCCceEEeecCCchhcCCHHHHHHHHHhCcCCcccCCCCEEEEECCCC--CCCEEEEE---------------------
Confidence 124567999999999999999999999999 444444456677889643 99999998
Q ss_pred CeeEEEEEEEecCCceeechhhhcceEEEEECCCCEEEEEe
Q 044471 393 GTAVWCIGIQKIQGQTILGDLVLKDKIFVYDLAGQRIGWSN 433 (493)
Q Consensus 393 ~~~~~cl~i~~~~~~~ILG~~fl~~~yvvfD~~~~~igfA~ 433 (493)
.||||++|||++|+|||++++|||||+
T Consensus 252 --------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 --------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred --------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 589999999999999999999999995
No 20
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=7.4e-50 Score=389.69 Aligned_cols=253 Identities=40% Similarity=0.792 Sum_probs=218.6
Q ss_pred eEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCCCCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCCCCCCCC
Q 044471 86 LYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTADSGCSS 165 (493)
Q Consensus 86 ~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~~~~c~~ 165 (493)
+|+++|+||||||++.|++||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 499999999999999999999999999985
Q ss_pred CCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCCCCcHHHHH
Q 044471 166 ESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSVISQL 245 (493)
Q Consensus 166 ~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~qL 245 (493)
|.|.+.|+||+.++|++++|+|+|++.. ..+.++.|||+..+++ + .....+||||||+...|++.||
T Consensus 31 ----~~~~~~Y~dg~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~--~~~~~~GIlGLg~~~~s~~~ql 97 (265)
T cd05476 31 ----CSYEYSYGDGSSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-G--SFGGADGILGLGRGPLSLVSQL 97 (265)
T ss_pred ----CceEeEeCCCceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-C--ccCCCCEEEECCCCcccHHHHh
Confidence 2477899999889999999999998642 1257799999998876 2 2456899999999999999999
Q ss_pred HhCCCCCcceEEeecCC--CCCcceEEeCCCCC---CCeEEecCCCC---CCeeeEEEeEEEEcCEEeecCCCccc--cc
Q 044471 246 SSQGLTPRVFSHCLKGD--SNGGGILVLGEIVE---PNIVYSPLVPS---QPHYNLNLQSISVNGQTLSIDPSAFS--TS 315 (493)
Q Consensus 246 ~~~g~i~~~FS~~l~~~--~~~~G~l~fGg~d~---~~~~~~pl~~~---~~~y~v~l~~i~v~~~~~~~~~~~~~--~~ 315 (493)
+.++ ++||+||.+. ...+|+|+||++|+ +++.|+|++.+ ..+|.|++++|+|+++.+.+++..+. ..
T Consensus 98 ~~~~---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~ 174 (265)
T cd05476 98 GSTG---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSD 174 (265)
T ss_pred hccc---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccC
Confidence 9887 8999999875 35679999999996 89999999865 57999999999999998876543322 23
Q ss_pred CCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCCcEEEecCcccEEEecccCCee
Q 044471 316 SNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGASLILNAQEYLIQQNSVGGTA 395 (493)
Q Consensus 316 ~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~p~~y~~~~~~~~~~~ 395 (493)
....+||||||++++||+++| |+|+|+|.++.++.+++++|+.+.. .+
T Consensus 175 ~~~~ai~DTGTs~~~lp~~~~----------------------------P~i~~~f~~~~~~~i~~~~y~~~~~----~~ 222 (265)
T cd05476 175 GSGGTIIDSGTTLTYLPDPAY----------------------------PDLTLHFDGGADLELPPENYFVDVG----EG 222 (265)
T ss_pred CCCcEEEeCCCcceEcCcccc----------------------------CCEEEEECCCCEEEeCcccEEEECC----CC
Confidence 457899999999999999887 8899999558999999999999632 34
Q ss_pred EEEEEEEecC--CceeechhhhcceEEEEECCCCEEEEEeCCC
Q 044471 396 VWCIGIQKIQ--GQTILGDLVLKDKIFVYDLAGQRIGWSNYDC 436 (493)
Q Consensus 396 ~~cl~i~~~~--~~~ILG~~fl~~~yvvfD~~~~~igfA~~~c 436 (493)
.+|+++.... +.||||++|||++|++||++++|||||+++|
T Consensus 223 ~~C~~~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 223 VVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CEEEEEecCCCCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 5789998873 8899999999999999999999999999999
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=8.5e-49 Score=388.52 Aligned_cols=271 Identities=27% Similarity=0.486 Sum_probs=232.7
Q ss_pred eEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCCCCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCCCCCCCC
Q 044471 86 LYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTADSGCSS 165 (493)
Q Consensus 86 ~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~~~~c~~ 165 (493)
+|+++|.||||+|+++|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 69999999999999999999999999996
Q ss_pred CCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCCCC------
Q 044471 166 ESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSM------ 239 (493)
Q Consensus 166 ~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~~~------ 239 (493)
.|++.|++|+.+.|.+++|+|++++.. +.++.|||++... ..+||||||+...
T Consensus 31 -----~~~~~Y~~g~~~~G~~~~D~v~~g~~~--------~~~~~fg~~~~~~--------~~~GilGLg~~~~~~~~~~ 89 (295)
T cd05474 31 -----DFSISYGDGTSASGTWGTDTVSIGGAT--------VKNLQFAVANSTS--------SDVGVLGIGLPGNEATYGT 89 (295)
T ss_pred -----eeEEEeccCCcEEEEEEEEEEEECCeE--------ecceEEEEEecCC--------CCcceeeECCCCCcccccC
Confidence 267889998778999999999998643 5678999998732 3589999999775
Q ss_pred -----cHHHHHHhCCCCC-cceEEeecCCCCCcceEEeCCCCC----CCeEEecCCCCC-----CeeeEEEeEEEEcCEE
Q 044471 240 -----SVISQLSSQGLTP-RVFSHCLKGDSNGGGILVLGEIVE----PNIVYSPLVPSQ-----PHYNLNLQSISVNGQT 304 (493)
Q Consensus 240 -----s~~~qL~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d~----~~~~~~pl~~~~-----~~y~v~l~~i~v~~~~ 304 (493)
+|++||++||+|+ ++||+||++.+...|.|+||++|+ +++.|+|+.... .+|.|++++|.++++.
T Consensus 90 ~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~ 169 (295)
T cd05474 90 GYTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSS 169 (295)
T ss_pred CCcCCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCC
Confidence 6999999999996 799999998655689999999984 679999998543 6899999999999988
Q ss_pred eecCCCcccccCCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCCcEEEecCccc
Q 044471 305 LSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGASLILNAQEY 384 (493)
Q Consensus 305 ~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~p~~y 384 (493)
+..+. ......++|||||++++||++++++|.+++.+.+......+..+|..... |+|+|+| +|.+++|++++|
T Consensus 170 ~~~~~----~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~C~~~~~-p~i~f~f-~g~~~~i~~~~~ 243 (295)
T cd05474 170 GNTTL----LSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSDEGLYVVDCDAKDD-GSLTFNF-GGATISVPLSDL 243 (295)
T ss_pred Ccccc----cCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCCCcEEEEeCCCCCC-CEEEEEE-CCeEEEEEHHHh
Confidence 65321 23457899999999999999999999999998876655667788877555 9999999 789999999999
Q ss_pred EEEecc-cCCeeEEEEEEEecC-CceeechhhhcceEEEEECCCCEEEEEeC
Q 044471 385 LIQQNS-VGGTAVWCIGIQKIQ-GQTILGDLVLKDKIFVYDLAGQRIGWSNY 434 (493)
Q Consensus 385 ~~~~~~-~~~~~~~cl~i~~~~-~~~ILG~~fl~~~yvvfD~~~~~igfA~~ 434 (493)
+++... ......|+++|++.+ +.||||++|||++|++||.+++|||||++
T Consensus 244 ~~~~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 244 VLPASTDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EeccccCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 997532 123457889999887 78999999999999999999999999985
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=7.3e-49 Score=392.68 Aligned_cols=297 Identities=34% Similarity=0.616 Sum_probs=251.2
Q ss_pred eEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCCCC---CCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCCCCC
Q 044471 86 LYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGC---PGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTADSG 162 (493)
Q Consensus 86 ~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~~C---~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~~~~ 162 (493)
+|+++|.||||+|+++|++||||+++||++..|..| ..+ ..|++++|+|++.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~-------~~y~~~~S~t~~~------------------ 55 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASS-------GFYNPSKSSTFSN------------------ 55 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTS-------C-BBGGGSTTEEE------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccc-------ccccccccccccc------------------
Confidence 599999999999999999999999999999999876 444 8999999999973
Q ss_pred CCCCCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCC-----
Q 044471 163 CSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQ----- 237 (493)
Q Consensus 163 c~~~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~----- 237 (493)
..+.+.+.|++|+ ++|.+++|+|++++.. ..++.||++....+... .....+||||||++
T Consensus 56 -----~~~~~~~~y~~g~-~~G~~~~D~v~ig~~~--------~~~~~f~~~~~~~~~~~-~~~~~~GilGLg~~~~~~~ 120 (317)
T PF00026_consen 56 -----QGKPFSISYGDGS-VSGNLVSDTVSIGGLT--------IPNQTFGLADSYSGDPF-SPIPFDGILGLGFPSLSSS 120 (317)
T ss_dssp -----EEEEEEEEETTEE-EEEEEEEEEEEETTEE--------EEEEEEEEEEEEESHHH-HHSSSSEEEE-SSGGGSGG
T ss_pred -----ceeeeeeeccCcc-cccccccceEeeeecc--------ccccceecccccccccc-ccccccccccccCCccccc
Confidence 3467999999999 8999999999998754 55789999998644211 23467999999974
Q ss_pred --CCcHHHHHHhCCCCC-cceEEeecCCCCCcceEEeCCCC----CCCeEEecCCCCCCeeeEEEeEEEEcCEEeecCCC
Q 044471 238 --SMSVISQLSSQGLTP-RVFSHCLKGDSNGGGILVLGEIV----EPNIVYSPLVPSQPHYNLNLQSISVNGQTLSIDPS 310 (493)
Q Consensus 238 --~~s~~~qL~~~g~i~-~~FS~~l~~~~~~~G~l~fGg~d----~~~~~~~pl~~~~~~y~v~l~~i~v~~~~~~~~~~ 310 (493)
..+++++|+++|+|+ ++||+||.+.....|.|+||++| +++++|+|+. ...+|.+.+++|.++++...
T Consensus 121 ~~~~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~-~~~~w~v~~~~i~i~~~~~~---- 195 (317)
T PF00026_consen 121 STYPTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLV-SSGYWSVPLDSISIGGESVF---- 195 (317)
T ss_dssp GTS-SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBS-STTTTEEEEEEEEETTEEEE----
T ss_pred ccCCcceecchhhccccccccceeeeecccccchheeeccccccccCceeccCcc-cccccccccccccccccccc----
Confidence 346999999999996 79999999876678999999998 4689999998 78899999999999998322
Q ss_pred cccccCCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCCcEEEecCcccEEEecc
Q 044471 311 AFSTSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGASLILNAQEYLIQQNS 390 (493)
Q Consensus 311 ~~~~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~p~~y~~~~~~ 390 (493)
......++||||+++++||++++++|++++.+.... ..+.++|+....+|.++|+| ++.+++|+|++|+.+...
T Consensus 196 ---~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~--~~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~~~~~~~~~ 269 (317)
T PF00026_consen 196 ---SSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD--GVYSVPCNSTDSLPDLTFTF-GGVTFTIPPSDYIFKIED 269 (317)
T ss_dssp ---EEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC--SEEEEETTGGGGSEEEEEEE-TTEEEEEEHHHHEEEESS
T ss_pred ---cccceeeecccccccccccchhhHHHHhhhcccccc--eeEEEecccccccceEEEee-CCEEEEecchHhcccccc
Confidence 122346999999999999999999999999987766 66778898777899999999 789999999999998654
Q ss_pred cCCeeEEEEEEEe---cC--CceeechhhhcceEEEEECCCCEEEEEeC
Q 044471 391 VGGTAVWCIGIQK---IQ--GQTILGDLVLKDKIFVYDLAGQRIGWSNY 434 (493)
Q Consensus 391 ~~~~~~~cl~i~~---~~--~~~ILG~~fl~~~yvvfD~~~~~igfA~~ 434 (493)
.....|.++|.. .. +.+|||.+|||++|++||.+++|||||++
T Consensus 270 -~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 270 -GNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp -TTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred -cccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 223367788888 22 78999999999999999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.2e-45 Score=363.28 Aligned_cols=269 Identities=37% Similarity=0.671 Sum_probs=228.1
Q ss_pred EEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCCCCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCCCCCCCCC
Q 044471 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTADSGCSSE 166 (493)
Q Consensus 87 Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~~~~c~~~ 166 (493)
|+++|.||||+|+++|++||||+++||+|..|..|..+... ...|++..|++++
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~---~~~~~~~~s~~~~----------------------- 54 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHP---RFKYDSSKSSTYK----------------------- 54 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCC---CCccCccCCceee-----------------------
Confidence 78999999999999999999999999999999987654210 0126777777664
Q ss_pred CCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCCC------Cc
Q 044471 167 SNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQS------MS 240 (493)
Q Consensus 167 ~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~~------~s 240 (493)
+..|.|.+.|++|+ +.|.+++|+|++++.. ..++.|||++...+.+ .....+||||||+.. .+
T Consensus 55 ~~~~~~~~~Y~~g~-~~g~~~~D~v~~~~~~--------~~~~~fg~~~~~~~~~--~~~~~~GilGLg~~~~~~~~~~s 123 (283)
T cd05471 55 DTGCTFSITYGDGS-VTGGLGTDTVTIGGLT--------IPNQTFGCATSESGDF--SSSGFDGILGLGFPSLSVDGVPS 123 (283)
T ss_pred cCCCEEEEEECCCe-EEEEEEEeEEEECCEE--------EeceEEEEEeccCCcc--cccccceEeecCCcccccccCCC
Confidence 57799999999987 5999999999998654 5679999999887522 245689999999987 78
Q ss_pred HHHHHHhCCCCC-cceEEeecCC--CCCcceEEeCCCCC----CCeEEecCCCC-CCeeeEEEeEEEEcCEEeecCCCcc
Q 044471 241 VISQLSSQGLTP-RVFSHCLKGD--SNGGGILVLGEIVE----PNIVYSPLVPS-QPHYNLNLQSISVNGQTLSIDPSAF 312 (493)
Q Consensus 241 ~~~qL~~~g~i~-~~FS~~l~~~--~~~~G~l~fGg~d~----~~~~~~pl~~~-~~~y~v~l~~i~v~~~~~~~~~~~~ 312 (493)
+++||.++++|. ++||+||.+. ....|.|+||++|+ +++.|+|++.. ..+|.|.+++|.|+++...
T Consensus 124 ~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~------ 197 (283)
T cd05471 124 FFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVI------ 197 (283)
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceee------
Confidence 999999999985 8999999975 35689999999994 78999999865 7899999999999997511
Q ss_pred cccCCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCCcEEEecCcccEEEecccC
Q 044471 313 STSSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGASLILNAQEYLIQQNSVG 392 (493)
Q Consensus 313 ~~~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~p~~y~~~~~~~~ 392 (493)
.......++|||||++++||+++++++.+++.+.+......+...|.....+|+|+|+|
T Consensus 198 ~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~i~f~f--------------------- 256 (283)
T cd05471 198 SSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSSSDGGYGVDCSPCDTLPDITFTF--------------------- 256 (283)
T ss_pred ecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccccCCcEEEeCcccCcCCCEEEEE---------------------
Confidence 12345689999999999999999999999999887764455566777788999999999
Q ss_pred CeeEEEEEEEecCCceeechhhhcceEEEEECCCCEEEEEe
Q 044471 393 GTAVWCIGIQKIQGQTILGDLVLKDKIFVYDLAGQRIGWSN 433 (493)
Q Consensus 393 ~~~~~cl~i~~~~~~~ILG~~fl~~~yvvfD~~~~~igfA~ 433 (493)
.+|||++|||++|++||+++++||||+
T Consensus 257 --------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 --------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred --------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 479999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=1.5e-30 Score=234.44 Aligned_cols=163 Identities=40% Similarity=0.772 Sum_probs=132.1
Q ss_pred EEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCCCCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCCCCCCCCC
Q 044471 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTADSGCSSE 166 (493)
Q Consensus 87 Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~~~~c~~~ 166 (493)
|+++|.||||+|++.|+|||||+.+|++|. .+.|+|++|+||+.++|+++.|...... ...|...
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~--------------~~~f~~~~Sst~~~v~C~s~~C~~~~~~-~~~~~~~ 65 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP--------------DPPFDPSKSSTYRPVPCSSPQCSSAPSF-CPCCCCS 65 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET------------------STT-TTSSBEC-BTTSHHHHHCTSS-BTCCTCE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC--------------CcccCCccCCcccccCCCCcchhhcccc-cccCCCC
Confidence 899999999999999999999999999982 2899999999999999999999976654 3344445
Q ss_pred CCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCCCCCcHHHHHH
Q 044471 167 SNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQSMSVISQLS 246 (493)
Q Consensus 167 ~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~qL~ 246 (493)
+..|.|.+.|++++.+.|.+++|+++++....+. ....++.|||++...+.+ ...+||||||+.++||+.||.
T Consensus 66 ~~~C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~---~~~~~~~FGC~~~~~g~~----~~~~GilGLg~~~~Sl~sQl~ 138 (164)
T PF14543_consen 66 NNSCPYSQSYGDGSSSSGFLASDTLTFGSSSGGS---NSVPDFIFGCATSNSGLF----YGADGILGLGRGPLSLPSQLA 138 (164)
T ss_dssp SSEEEEEEEETTTEEEEEEEEEEEEEEEEESSSS---EEEEEEEEEEE-GGGTSS----TTEEEEEE-SSSTTSHHHHHH
T ss_pred cCcccceeecCCCccccCceEEEEEEecCCCCCC---ceeeeEEEEeeeccccCC----cCCCcccccCCCcccHHHHHH
Confidence 7889999999999999999999999999765332 336789999999998754 378999999999999999998
Q ss_pred hCCCCCcceEEeecC-CCCCcceEEeCC
Q 044471 247 SQGLTPRVFSHCLKG-DSNGGGILVLGE 273 (493)
Q Consensus 247 ~~g~i~~~FS~~l~~-~~~~~G~l~fGg 273 (493)
++ ..++|||||.+ .....|.|+||+
T Consensus 139 ~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 139 SS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred Hh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 87 55899999998 456789999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.89 E-value=1.8e-22 Score=181.54 Aligned_cols=140 Identities=34% Similarity=0.631 Sum_probs=111.1
Q ss_pred eeeEEEeEEEEcCEEeecCCCcccc-cCCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCc------------ccccc
Q 044471 290 HYNLNLQSISVNGQTLSIDPSAFST-SSNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSV------------RPVLT 356 (493)
Q Consensus 290 ~y~v~l~~i~v~~~~~~~~~~~~~~-~~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~------------~~~~~ 356 (493)
+|.|+|.+|+|+++.+.+++..|.. ....+++|||||++++||+++|+++++++.+++.... .+|..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 5999999999999999999887643 2357899999999999999999999999998875542 12222
Q ss_pred CC----CCcCccceEEEEecCCcEEEecCcccEEEecccCCeeEEEEEEEec---C-CceeechhhhcceEEEEECCCCE
Q 044471 357 KG----NHTAIFPQISFNFAGGASLILNAQEYLIQQNSVGGTAVWCIGIQKI---Q-GQTILGDLVLKDKIFVYDLAGQR 428 (493)
Q Consensus 357 ~~----~~~~~~P~i~f~f~gg~~~~l~p~~y~~~~~~~~~~~~~cl~i~~~---~-~~~ILG~~fl~~~yvvfD~~~~~ 428 (493)
.. .....+|+|+|+|.||++++|+|++|+++.. .+..|++|.+. . +..|||..+|++++++||++++|
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~----~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ 156 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVS----PGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGR 156 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEEC----TTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeecc----CCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCE
Confidence 22 1246899999999889999999999999864 35899999998 2 78999999999999999999999
Q ss_pred EEEEe
Q 044471 429 IGWSN 433 (493)
Q Consensus 429 igfA~ 433 (493)
|||+|
T Consensus 157 igF~~ 161 (161)
T PF14541_consen 157 IGFAP 161 (161)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=5.2e-22 Score=166.67 Aligned_cols=108 Identities=37% Similarity=0.668 Sum_probs=90.3
Q ss_pred EEEEeCCCCeEEEEEEecCCCeeEEeCCCCCCCCCCCCCcccCCcC-CCCCCCccceeccCCccccCCCCCCCCCCCCCC
Q 044471 89 TKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFF-DPSSSSTASLVRCSDQRCSLGLNTADSGCSSES 167 (493)
Q Consensus 89 ~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~~C~~~~~~~~~~~~y-~p~~SsT~~~v~C~~~~C~~~~~~~~~~c~~~~ 167 (493)
++|.||||||++.|+|||||+++||+|..|..|..+. .+.| +|+.|++++ .
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~-----~~~~~~~~~sst~~-----------------------~ 52 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYS-----HSSYDDPSASSTYS-----------------------D 52 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCccccc-----ccccCCcCCCCCCC-----------------------C
Confidence 4799999999999999999999999999998776442 1456 999999986 4
Q ss_pred CCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEee
Q 044471 168 NQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGF 234 (493)
Q Consensus 168 ~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGL 234 (493)
..|.|.+.|++|+ +.|.+++|+|+|++.. ..++.|||++...+.+. .....+|||||
T Consensus 53 ~~~~~~~~Y~~g~-~~g~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~-~~~~~~GilGL 109 (109)
T cd05470 53 NGCTFSITYGTGS-LSGGLSTDTVSIGDIE--------VVGQAFGCATDEPGATF-LPALFDGILGL 109 (109)
T ss_pred CCcEEEEEeCCCe-EEEEEEEEEEEECCEE--------ECCEEEEEEEecCCccc-cccccccccCC
Confidence 5689999999997 5899999999998644 56799999999877542 23567999997
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.90 E-value=3.5e-05 Score=62.25 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=61.3
Q ss_pred eEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCCCCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCCCCCCCC
Q 044471 86 LYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTADSGCSS 165 (493)
Q Consensus 86 ~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~~~~c~~ 165 (493)
.|++++.|+ .+++.+++|||++.+|+.......+... .
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~~-----------------~----------------------- 39 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGLP-----------------L----------------------- 39 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCCC-----------------c-----------------------
Confidence 589999999 7999999999999999976421111100 0
Q ss_pred CCCCceeEEEcCCCCeEEEEEEEEEEEeeeccCCccccccCcceEEEeEeeccCCCCCCCCCcceEEeeCC
Q 044471 166 ESNQCSYTFQYGDGSGTSGYYVADFLHLDTILQGSLTTNSTAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQ 236 (493)
Q Consensus 166 ~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~ 236 (493)
.......+...+|.........+.+++++.. ..++.+........ ..+||||+.+
T Consensus 40 -~~~~~~~~~~~~G~~~~~~~~~~~i~ig~~~--------~~~~~~~v~d~~~~-------~~~gIlG~d~ 94 (96)
T cd05483 40 -TLGGKVTVQTANGRVRAARVRLDSLQIGGIT--------LRNVPAVVLPGDAL-------GVDGLLGMDF 94 (96)
T ss_pred -cCCCcEEEEecCCCccceEEEcceEEECCcE--------EeccEEEEeCCccc-------CCceEeChHH
Confidence 1224566777888766666668889988643 23345554443221 3689999853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.94 E-value=0.049 Score=46.20 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=27.3
Q ss_pred ceeEEEEEEeCCCCeEEEEEEecCCCeeEEeCC
Q 044471 84 VGLYYTKVQLGSPPREFHVQIDTGSDVLWVSCS 116 (493)
Q Consensus 84 ~~~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~ 116 (493)
+|.|++++.|. .+++.++||||++.+-++..
T Consensus 9 ~g~~~v~~~In--G~~~~flVDTGAs~t~is~~ 39 (121)
T TIGR02281 9 DGHFYATGRVN--GRNVRFLVDTGATSVALNEE 39 (121)
T ss_pred CCeEEEEEEEC--CEEEEEEEECCCCcEEcCHH
Confidence 58999999997 78999999999999887653
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.58 E-value=0.099 Score=41.18 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=21.1
Q ss_pred EEEEeCCCCeEEEEEEecCCCeeEEeCC
Q 044471 89 TKVQLGSPPREFHVQIDTGSDVLWVSCS 116 (493)
Q Consensus 89 ~~i~iGTP~q~~~v~lDTGSs~lWV~~~ 116 (493)
+++.|+ .+++++++|||++.+.+...
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~ 26 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRS 26 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHH
Confidence 356777 68999999999998887644
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.04 E-value=0.36 Score=41.04 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=22.8
Q ss_pred CceeechhhhcceEEEEECCCCEEEE
Q 044471 406 GQTILGDLVLKDKIFVYDLAGQRIGW 431 (493)
Q Consensus 406 ~~~ILG~~fl~~~yvvfD~~~~~igf 431 (493)
...|||..||+.+-.+.|+.+++|-+
T Consensus 99 ~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 99 VDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred cCEEecHHHHHhCCeEEECCCCEEEC
Confidence 34699999999999999999998753
No 31
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=94.97 E-value=0.24 Score=42.89 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=24.8
Q ss_pred ceeechhhhcceEEEEECCCCEEEEEe
Q 044471 407 QTILGDLVLKDKIFVYDLAGQRIGWSN 433 (493)
Q Consensus 407 ~~ILG~~fl~~~yvvfD~~~~~igfA~ 433 (493)
..|||.++|+.+..+-|..+++|-|..
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 469999999999999999999999864
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=92.77 E-value=1.1 Score=38.06 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=27.2
Q ss_pred eeEEEEEEeCCCCeEEEEEEecCCCeeEEeCCC
Q 044471 85 GLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSS 117 (493)
Q Consensus 85 ~~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~ 117 (493)
..+++++.|+ ++++.+++|||++..++....
T Consensus 15 ~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~ 45 (124)
T cd05479 15 PMLYINVEIN--GVPVKAFVDSGAQMTIMSKAC 45 (124)
T ss_pred eEEEEEEEEC--CEEEEEEEeCCCceEEeCHHH
Confidence 5788999999 789999999999999987543
No 33
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=91.83 E-value=2.9 Score=35.32 Aligned_cols=36 Identities=33% Similarity=0.439 Sum_probs=27.1
Q ss_pred CCeeeEEEeEEEEcCEEeecCCCcccccCCCcEEEeccCcceeccHHHHHHH
Q 044471 288 QPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPL 339 (493)
Q Consensus 288 ~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i 339 (493)
..+|.++ +.|||+.+. +++|||.+.+.++++..+++
T Consensus 9 ~g~~~v~---~~InG~~~~-------------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR-------------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE-------------EEEECCCCcEEcCHHHHHHc
Confidence 3456444 667887653 89999999999999876664
No 34
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=91.82 E-value=1 Score=37.18 Aligned_cols=88 Identities=17% Similarity=0.141 Sum_probs=48.0
Q ss_pred cEEEeccCccee-ccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCCcEEEecCcccEEEecccCCeeEE
Q 044471 319 GTIVDTGTTLAY-LTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGASLILNAQEYLIQQNSVGGTAVW 397 (493)
Q Consensus 319 ~~iiDSGTt~~~-lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~p~~y~~~~~~~~~~~~~ 397 (493)
.+++|||.+... +|+++++.+ +-... .....+..+|.....+-. ..... .++...-
T Consensus 18 ~~LVDTGat~~~~l~~~~a~~l----gl~~~----------------~~~~~~tA~G~~~~~~v~--~~~v~-igg~~~~ 74 (107)
T TIGR03698 18 RALVDTGFSGFLLVPPDIVNKL----GLPEL----------------DQRRVYLADGREVLTDVA--KASII-INGLEID 74 (107)
T ss_pred EEEEECCCCeEEecCHHHHHHc----CCCcc----------------cCcEEEecCCcEEEEEEE--EEEEE-ECCEEEE
Confidence 589999999886 999876663 11100 012333334432222211 11111 1222222
Q ss_pred EEEEEecC-CceeechhhhcceEEEEECCCCEE
Q 044471 398 CIGIQKIQ-GQTILGDLVLKDKIFVYDLAGQRI 429 (493)
Q Consensus 398 cl~i~~~~-~~~ILG~~fl~~~yvvfD~~~~~i 429 (493)
+..+.... +..+||..||+.+-++.|+.++++
T Consensus 75 ~~v~~~~~~~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 75 AFVESLGYVDEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred EEEEecCCCCccEecHHHHhhCCEEEehhhCcC
Confidence 22222222 567999999999999999987753
No 35
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.33 E-value=0.26 Score=39.30 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=25.1
Q ss_pred EEEEEEeCCCCeEEEEEEecCCCeeEEeCC
Q 044471 87 YYTKVQLGSPPREFHVQIDTGSDVLWVSCS 116 (493)
Q Consensus 87 Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~ 116 (493)
||+++.|+ .+++.+++||||+..++..+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57899999 89999999999999999764
No 36
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=88.68 E-value=4.9 Score=40.31 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=34.5
Q ss_pred EcCCCCeEEEEEEEEEEEeeeccCCcccc----c-cCcceEEEeEeeccCCCCCCCCCcceEEeeCCCC
Q 044471 175 QYGDGSGTSGYYVADFLHLDTILQGSLTT----N-STAQIMFGCSTMQTGDLTKSDRAVDGIFGFGQQS 238 (493)
Q Consensus 175 ~Yg~Gs~~~G~~~~D~v~~~~~~~~~~~~----~-~~~~~~FG~~~~~~~~~~~~~~~~~GIlGLg~~~ 238 (493)
.|++|. +-|-+.+-+|+|++.....+-. . .....+=.|..............++||||+|.-.
T Consensus 83 ~F~sgy-tWGsVr~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~ 150 (370)
T PF11925_consen 83 QFASGY-TWGSVRTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFP 150 (370)
T ss_pred hccCcc-cccceEEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCc
Confidence 467766 4788899999999754332100 0 0122223343332211222345679999999753
No 37
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=88.44 E-value=7.8 Score=30.63 Aligned_cols=30 Identities=30% Similarity=0.588 Sum_probs=25.1
Q ss_pred EEEEcCEEeecCCCcccccCCCcEEEeccCcceeccHHHHHHH
Q 044471 297 SISVNGQTLSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPL 339 (493)
Q Consensus 297 ~i~v~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i 339 (493)
.+.|||+.+. +.+|||++.+.++++.+..+
T Consensus 4 ~~~Ing~~i~-------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-------------EEEcCCcceEEeCHHHHHHh
Confidence 4678888764 79999999999999887765
No 38
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=87.52 E-value=1 Score=34.16 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=29.1
Q ss_pred cceeEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCC
Q 044471 83 VVGLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSC 118 (493)
Q Consensus 83 ~~~~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C 118 (493)
..+.+++++.|| .+.+..++|||++...|+..-+
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 358899999999 6999999999999998876543
No 39
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=85.97 E-value=5.2 Score=31.38 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=21.1
Q ss_pred EEEeCCCCeEEEEEEecCCCeeEEeCCC
Q 044471 90 KVQLGSPPREFHVQIDTGSDVLWVSCSS 117 (493)
Q Consensus 90 ~i~iGTP~q~~~v~lDTGSs~lWV~~~~ 117 (493)
.+.|. .+++.+++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 35565 789999999999999987543
No 40
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=83.33 E-value=12 Score=29.38 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=24.2
Q ss_pred EEEcCEEeecCCCcccccCCCcEEEeccCcceeccHHHHHHH
Q 044471 298 ISVNGQTLSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPL 339 (493)
Q Consensus 298 i~v~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i 339 (493)
+.|||+.+. .++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~-------------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------------EEEECCCCeEEECHHHhhhc
Confidence 567887764 79999999999999887764
No 41
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=81.14 E-value=4.3 Score=35.86 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=19.3
Q ss_pred cEEEeccCcceeccHHHHHHHHH
Q 044471 319 GTIVDTGTTLAYLTEAAYDPLIN 341 (493)
Q Consensus 319 ~~iiDSGTt~~~lp~~~~~~i~~ 341 (493)
.++||||++....-.++.+.+--
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL~L 69 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKLEL 69 (177)
T ss_pred EEEEeCCCccceeehhhHHhhCC
Confidence 48999999999999988777643
No 42
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=80.32 E-value=9.3 Score=30.29 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=44.8
Q ss_pred CCCcEEEeccCcceeccHHHHHHHHHHHHhhcccCccccccCCCCcCccceEEEEecCCcEEEecCcccEEEecccCCe-
Q 044471 316 SNKGTIVDTGTTLAYLTEAAYDPLINAITSSVSQSVRPVLTKGNHTAIFPQISFNFAGGASLILNAQEYLIQQNSVGGT- 394 (493)
Q Consensus 316 ~~~~~iiDSGTt~~~lp~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~p~~y~~~~~~~~~~- 394 (493)
.+...++|||...+.+|....+.- ..-.++.++=.+|..|....+..+.-. .+..
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~~~----------------------~~~~~~~l~AANgt~I~tyG~~~l~ld--lGlrr 63 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTKKS----------------------LKPSPLTLQAANGTPIATYGTRSLTLD--LGLRR 63 (89)
T ss_pred CCcEEEEeCCCceEeecccccccc----------------------ccCCceEEEeCCCCeEeeeeeEEEEEE--cCCCc
Confidence 455689999999999998543320 111234555556666665554444321 0111
Q ss_pred -eEEEEEEEecCCceeechhhhcce
Q 044471 395 -AVWCIGIQKIQGQTILGDLVLKDK 418 (493)
Q Consensus 395 -~~~cl~i~~~~~~~ILG~~fl~~~ 418 (493)
-.|-+-+... +.-|||..||+++
T Consensus 64 ~~~w~FvvAdv-~~pIlGaDfL~~~ 87 (89)
T cd06094 64 PFAWNFVVADV-PHPILGADFLQHY 87 (89)
T ss_pred EEeEEEEEcCC-CcceecHHHHHHc
Confidence 1233333222 5679999999976
No 43
>PF13650 Asp_protease_2: Aspartyl protease
Probab=79.90 E-value=2.7 Score=32.71 Aligned_cols=29 Identities=24% Similarity=0.553 Sum_probs=23.5
Q ss_pred EEEcCEEeecCCCcccccCCCcEEEeccCcceeccHHHHHHH
Q 044471 298 ISVNGQTLSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPL 339 (493)
Q Consensus 298 i~v~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i 339 (493)
+.|||+++ .++||||.+.+.+.++.++++
T Consensus 3 v~vng~~~-------------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-------------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-------------EEEEcCCCCcEEECHHHHHHc
Confidence 56777665 389999999999999877665
No 44
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=79.51 E-value=2.7 Score=33.79 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=22.7
Q ss_pred EEEEEeCCCCeEEEEEEecCCCeeEEeCC
Q 044471 88 YTKVQLGSPPREFHVQIDTGSDVLWVSCS 116 (493)
Q Consensus 88 ~~~i~iGTP~q~~~v~lDTGSs~lWV~~~ 116 (493)
+.+|.|. .+++.++|||||+..-++..
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccc
Confidence 3678888 68999999999999888754
No 45
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=78.53 E-value=3.6 Score=34.90 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=23.1
Q ss_pred EEEEcCEEeecCCCcccccCCCcEEEeccCcceeccHHHHHHH
Q 044471 297 SISVNGQTLSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPL 339 (493)
Q Consensus 297 ~i~v~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i 339 (493)
.+++||+.+. |++|||+..+.++.+.++.+
T Consensus 28 ~~~ing~~vk-------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-------------EEEeCCCCccccCHHHHHHc
Confidence 4678888874 99999999999999877764
No 46
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=74.19 E-value=6.1 Score=29.88 Aligned_cols=29 Identities=31% Similarity=0.594 Sum_probs=23.6
Q ss_pred EEEcCEEeecCCCcccccCCCcEEEeccCcceeccHHHHHHH
Q 044471 298 ISVNGQTLSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPL 339 (493)
Q Consensus 298 i~v~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i 339 (493)
+.+++..+. +++|||.+..+++++.++.+
T Consensus 13 ~~I~g~~~~-------------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK-------------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE-------------EEEeCCCcceecCHHHHHHh
Confidence 566776653 89999999999999877765
No 47
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=73.90 E-value=8.5 Score=35.38 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=52.3
Q ss_pred cceeEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCCCCCCCCCCcccCCcCCCCCCCccceeccCCccccCCCCCCCCC
Q 044471 83 VVGLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFFDPSSSSTASLVRCSDQRCSLGLNTADSG 162 (493)
Q Consensus 83 ~~~~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~~C~~~~~~~~~~~~y~p~~SsT~~~v~C~~~~C~~~~~~~~~~ 162 (493)
.+|-|.++..|- .|++..++|||-+..-++..+... -.||.+.
T Consensus 102 ~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R-----------lGid~~~------------------------ 144 (215)
T COG3577 102 RDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR-----------LGIDLNS------------------------ 144 (215)
T ss_pred CCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH-----------hCCCccc------------------------
Confidence 458899999998 899999999999988886543111 1233321
Q ss_pred CCCCCCCceeEEEcCCCCeEEEEEEEEEEEeeecc
Q 044471 163 CSSESNQCSYTFQYGDGSGTSGYYVADFLHLDTIL 197 (493)
Q Consensus 163 c~~~~~~~~~~~~Yg~Gs~~~G~~~~D~v~~~~~~ 197 (493)
...++.+.-.+|....--.-.|.|.||+..
T Consensus 145 -----l~y~~~v~TANG~~~AA~V~Ld~v~IG~I~ 174 (215)
T COG3577 145 -----LDYTITVSTANGRARAAPVTLDRVQIGGIR 174 (215)
T ss_pred -----cCCceEEEccCCccccceEEeeeEEEccEE
Confidence 234566777888865566678999998765
No 48
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=72.77 E-value=7.2 Score=30.60 Aligned_cols=30 Identities=27% Similarity=0.553 Sum_probs=23.9
Q ss_pred EEEEcCEEeecCCCcccccCCCcEEEeccCcceeccHHHHHHH
Q 044471 297 SISVNGQTLSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPL 339 (493)
Q Consensus 297 ~i~v~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i 339 (493)
.+.||++.+. +++|||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~~-------------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPVR-------------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEEE-------------EEEECCCCcEEcCHHHHHHc
Confidence 4667776653 89999999999999876654
No 49
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=65.27 E-value=8.8 Score=30.36 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.0
Q ss_pred EEEeCCCCeEEEEEEecCCCeeEEeCC
Q 044471 90 KVQLGSPPREFHVQIDTGSDVLWVSCS 116 (493)
Q Consensus 90 ~i~iGTP~q~~~v~lDTGSs~lWV~~~ 116 (493)
.+.|+ .|.+.+++|||++++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 35666 79999999999999988753
No 50
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=64.33 E-value=67 Score=25.58 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=18.9
Q ss_pred cEEEeccCcceeccHHHHHHHH
Q 044471 319 GTIVDTGTTLAYLTEAAYDPLI 340 (493)
Q Consensus 319 ~~iiDSGTt~~~lp~~~~~~i~ 340 (493)
.+.+|||.+...+|...++.+.
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 4799999999999998877754
No 51
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=53.73 E-value=11 Score=30.08 Aligned_cols=26 Identities=23% Similarity=0.663 Sum_probs=20.6
Q ss_pred EEEEcCEEeecCCCcccccCCCcEEEeccCcceeccHHH
Q 044471 297 SISVNGQTLSIDPSAFSTSSNKGTIVDTGTTLAYLTEAA 335 (493)
Q Consensus 297 ~i~v~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~ 335 (493)
.|.++++.+. ++||||+..+.++++.
T Consensus 9 ~v~i~g~~i~-------------~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKIK-------------ALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEEE-------------EEEETTBSSEEESSGG
T ss_pred EEeECCEEEE-------------EEEecCCCcceecccc
Confidence 4566777653 8999999999999853
No 52
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=46.43 E-value=45 Score=30.80 Aligned_cols=36 Identities=36% Similarity=0.482 Sum_probs=28.4
Q ss_pred CCeeeEEEeEEEEcCEEeecCCCcccccCCCcEEEeccCcceeccHHHHHHH
Q 044471 288 QPHYNLNLQSISVNGQTLSIDPSAFSTSSNKGTIVDTGTTLAYLTEAAYDPL 339 (493)
Q Consensus 288 ~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~i 339 (493)
++||.++ ..|||+.+. .++|||.|.+.++++..+.+
T Consensus 103 ~GHF~a~---~~VNGk~v~-------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD-------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEEE-------------EEEecCcceeecCHHHHHHh
Confidence 4677655 678998875 79999999999999765553
No 53
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=44.06 E-value=29 Score=30.80 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=22.2
Q ss_pred EEEEeCCCCeEEEEEEecCCCeeEEeCC
Q 044471 89 TKVQLGSPPREFHVQIDTGSDVLWVSCS 116 (493)
Q Consensus 89 ~~i~iGTP~q~~~v~lDTGSs~lWV~~~ 116 (493)
..+.+++-..++++++||||....+...
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeehh
Confidence 4555666689999999999999888654
No 54
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=38.58 E-value=23 Score=29.85 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=18.0
Q ss_pred EEEeccCc-ceeccHHHHHHH
Q 044471 320 TIVDTGTT-LAYLTEAAYDPL 339 (493)
Q Consensus 320 ~iiDSGTt-~~~lp~~~~~~i 339 (493)
.++|||-+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999988875
No 55
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=36.56 E-value=59 Score=27.57 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=25.6
Q ss_pred eeEEEEEEeCCCCeEEEEEEecCCCeeEEeCCCCCCCCC
Q 044471 85 GLYYTKVQLGSPPREFHVQIDTGSDVLWVSCSSCNGCPG 123 (493)
Q Consensus 85 ~~Y~~~i~iGTP~q~~~v~lDTGSs~lWV~~~~C~~C~~ 123 (493)
..+|++++|+ .+++++.+|||.-.+-+...-+..|.-
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~gL 59 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERCGL 59 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHTTG
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHcCC
Confidence 5788999999 899999999999988886543345543
No 56
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=35.63 E-value=59 Score=30.03 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=20.1
Q ss_pred CceeechhhhcceEEEEECCCCEEEEEe
Q 044471 406 GQTILGDLVLKDKIFVYDLAGQRIGWSN 433 (493)
Q Consensus 406 ~~~ILG~~fl~~~yvvfD~~~~~igfA~ 433 (493)
-..|||.+|+|.++=-...+ .+|-|..
T Consensus 91 ~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 91 IDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 45699999999887666665 4677765
No 57
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=35.37 E-value=2.5e+02 Score=28.36 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=31.0
Q ss_pred EEEEEEecC-CceeechhhhcceEEEEECCCCEEEEEeC
Q 044471 397 WCIGIQKIQ-GQTILGDLVLKDKIFVYDLAGQRIGWSNY 434 (493)
Q Consensus 397 ~cl~i~~~~-~~~ILG~~fl~~~yvvfD~~~~~igfA~~ 434 (493)
|-+.+.... ....||-..||++--.-|++++++-|+..
T Consensus 308 c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 308 CSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred cceEEecCCCcchhhhHHHHHhccceeecccCeEEecCC
Confidence 446666654 44699999999999999999999998865
No 58
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=34.52 E-value=1.5e+02 Score=24.18 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=18.4
Q ss_pred EEEEeCCCC----eEEEEEEecCCCeeE
Q 044471 89 TKVQLGSPP----REFHVQIDTGSDVLW 112 (493)
Q Consensus 89 ~~i~iGTP~----q~~~v~lDTGSs~lW 112 (493)
+++.|..|. -++.+++|||.+..-
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~ 29 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFL 29 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEE
Confidence 577888772 368999999998654
No 59
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=22.26 E-value=4.4e+02 Score=21.53 Aligned_cols=30 Identities=20% Similarity=0.084 Sum_probs=22.3
Q ss_pred EEEEEEecC-CceeechhhhcceEEEEECCC
Q 044471 397 WCIGIQKIQ-GQTILGDLVLKDKIFVYDLAG 426 (493)
Q Consensus 397 ~cl~i~~~~-~~~ILG~~fl~~~yvvfD~~~ 426 (493)
|-+.+.... -..+||-..||++--.-|+++
T Consensus 73 CSftVld~~~~d~llGLdmLkrhqc~IdL~k 103 (103)
T cd05480 73 CSAQVVDDNEKNFSLGLQTLKSLKCVINLEK 103 (103)
T ss_pred EEEEEEcCCCcceEeeHHHHhhcceeeeccC
Confidence 445666654 557999999999988888764
No 60
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=20.51 E-value=75 Score=25.62 Aligned_cols=14 Identities=14% Similarity=0.142 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhhcC
Q 044471 479 AFLLHICMLGSYLF 492 (493)
Q Consensus 479 ~~~~~~~~~~~~~~ 492 (493)
+++..|+.|+.|+|
T Consensus 77 ~~v~~lv~~l~w~f 90 (96)
T PTZ00382 77 AVVGGLVGFLCWWF 90 (96)
T ss_pred hHHHHHHHHHhhee
Confidence 33434444444444
Done!