BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044478
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 194 bits (493), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 150/227 (66%), Gaps = 15/227 (6%)
Query: 6 SASPNKVIRINAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTML 65
S+SP +++ K+ R A+F P+IWGD FL+ D + +HQ+LK+E+R M+
Sbjct: 10 SSSP-----LSSNKDEMRPKADFQPSIWGDLFLN-CPDKNIDAETEKRHQQLKEEVRKMI 63
Query: 66 RADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYIS 125
A + +Q KL ID +QRLGVSYHF EI++ L+ ++ N D + +LY S
Sbjct: 64 VAPMANSTQ-KLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE-------NDLYTTS 115
Query: 126 LQFRLLRQNGYKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEA 185
++FRLLR++GY +S DVFN FKD GNFKS + D+RG+L LY+A++LRVHGE+IL+EA
Sbjct: 116 IRFRLLREHGYNVSC-DVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEA 174
Query: 186 LTFTVTHLESFTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYMPIY 232
++FT HL + + L+ +V+ AL + IR+ LPR+EA+HY+ +Y
Sbjct: 175 ISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVY 221
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 139/214 (64%), Gaps = 10/214 (4%)
Query: 16 NAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQT 75
N E+E R A+F P++WGD FLS++ D + + + + + LK++ R+ML A K + T
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADT 67
Query: 76 KLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNG 135
L+LID I+RLG+SYHFE EIDEIL +++ N +C+ +L +LQFRLLRQ+G
Sbjct: 68 -LNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCN--------DLCTSALQFRLLRQHG 118
Query: 136 YKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLES 195
+ IS ++F+ F+D NG FK L D+ G+L+LYEA+H+R H ++IL +AL F+ HLES
Sbjct: 119 FNISP-EIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES 177
Query: 196 FTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYM 229
+ L QV AL + + K +PR+E + ++
Sbjct: 178 AAPHLKSPLREQVTHALEQCLHKGVPRVETRFFI 211
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 174 bits (441), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 139/214 (64%), Gaps = 10/214 (4%)
Query: 16 NAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQT 75
N E+E R A+F P++WGD FLS++ D + + + + + LK++ R+ML A K + T
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADT 67
Query: 76 KLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNG 135
L+LID I+RLG+SYHFE EIDEIL +++ N +C+ +L +LQFRLLRQ+G
Sbjct: 68 -LNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCN--------DLCTSALQFRLLRQHG 118
Query: 136 YKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLES 195
+ IS ++F+ F+D NG FK L D+ G+L+LYEA+H+R H ++IL +AL F+ HLES
Sbjct: 119 FNISP-EIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES 177
Query: 196 FTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYM 229
+ L QV AL + + K +PR+E + ++
Sbjct: 178 AAPHLKSPLREQVTHALEQCLHKGVPRVETRFFI 211
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 138/214 (64%), Gaps = 10/214 (4%)
Query: 16 NAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQT 75
N E+E R A+F P++WGD FLS++ D + + + + + LK++ R ML A K + T
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADT 67
Query: 76 KLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNG 135
L+LID I+RLG+SYHFE EID+IL +++ N +C+ +L +LQFRLLRQ+G
Sbjct: 68 -LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCN--------DLCTSALQFRLLRQHG 118
Query: 136 YKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLES 195
+ IS ++F+ F+D NG FK L D+ G+L+LYEA+H+R H ++IL +AL F+ HLES
Sbjct: 119 FNISP-EIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES 177
Query: 196 FTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYM 229
+ L QV AL + + K +PR+E + ++
Sbjct: 178 AAPHLKSPLREQVTHALEQCLHKGVPRVETRFFI 211
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 138/214 (64%), Gaps = 10/214 (4%)
Query: 16 NAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQT 75
N E+E R A+F P++WGD FLS++ D + + + + + LK++ R ML A K + T
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADT 67
Query: 76 KLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNG 135
L+LID I+RLG+SYHFE EID+IL +++ N +C+ +L +LQFRLLRQ+G
Sbjct: 68 -LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCN--------DLCTSALQFRLLRQHG 118
Query: 136 YKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLES 195
+ IS ++F+ F+D NG FK L D+ G+L+LYEA+H+R H ++IL +AL F+ HLES
Sbjct: 119 FNISP-EIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES 177
Query: 196 FTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYM 229
+ L QV AL + + K +PR+E + ++
Sbjct: 178 AAPHLKSPLREQVTHALEQCLHKGVPRVETRFFI 211
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 138/214 (64%), Gaps = 10/214 (4%)
Query: 16 NAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQT 75
N E+E R A+F P++WGD FLS++ D + + + + + LK++ R ML A K + T
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADT 67
Query: 76 KLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNG 135
L+LID I+RLG+SYHFE EID+IL +++ N +C+ +L +LQFRLLRQ+G
Sbjct: 68 -LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCN--------DLCTSALQFRLLRQHG 118
Query: 136 YKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLES 195
+ IS ++F+ F+D NG FK L D+ G+L+LYEA+H+R H ++IL +AL F+ HLES
Sbjct: 119 FNISP-EIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES 177
Query: 196 FTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYM 229
+ L QV AL + + K +PR+E + ++
Sbjct: 178 AAPHLKSPLREQVTHALEQCLHKGVPRVETRFFI 211
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 138/214 (64%), Gaps = 10/214 (4%)
Query: 16 NAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQT 75
N E+E R A+F P++WGD FLS++ D + + + + + LK++ R ML A K + T
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADT 67
Query: 76 KLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNG 135
L+LID I+RLG+SYHFE EID+IL +++ N +C+ +L +LQFRLLRQ+G
Sbjct: 68 -LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCN--------DLCTSALQFRLLRQHG 118
Query: 136 YKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLES 195
+ IS ++F+ F+D NG FK L D+ G+L+LYEA+H+R H ++IL +AL F+ HLES
Sbjct: 119 FNISP-EIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES 177
Query: 196 FTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYM 229
+ L QV AL + + K +PR+E + ++
Sbjct: 178 AAPHLKSPLREQVTHALEQCLHKGVPRVETRFFI 211
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 170 bits (430), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 137/214 (64%), Gaps = 10/214 (4%)
Query: 16 NAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQT 75
N E+E R A+F P++WGD FLS++ + + + + + LK++ R ML A K + T
Sbjct: 10 NYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADT 69
Query: 76 KLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNG 135
L+LID I+RLG+SYHFE EID+IL +++ N +C+ +L +LQFRLLRQ+G
Sbjct: 70 -LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCN--------DLCTSALQFRLLRQHG 120
Query: 136 YKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLES 195
+ IS ++F+ F+D NG FK L D+ G+L+LYEA+H+R H ++IL +AL F+ HLES
Sbjct: 121 FNISP-EIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES 179
Query: 196 FTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYM 229
+ L QV AL + + K +PR+E + ++
Sbjct: 180 AAPHLKSPLREQVTHALEQCLHKGVPRVETRFFI 213
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 170 bits (430), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 137/214 (64%), Gaps = 10/214 (4%)
Query: 16 NAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQT 75
N E+E R A+F P++WGD FLS++ + + + + + LK++ R ML A K + T
Sbjct: 10 NYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADT 69
Query: 76 KLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNG 135
L+LID I+RLG+SYHFE EID+IL +++ N +C+ +L +LQFRLLRQ+G
Sbjct: 70 -LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCN--------DLCTSALQFRLLRQHG 120
Query: 136 YKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLES 195
+ IS ++F+ F+D NG FK L D+ G+L+LYEA+H+R H ++IL +AL F+ HLES
Sbjct: 121 FNISP-EIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES 179
Query: 196 FTSQSNTQLAAQVNRALNRPIRKSLPRLEAKHYM 229
+ L QV AL + + K +PR+E + ++
Sbjct: 180 AAPHLKSPLREQVTHALEQCLHKGVPRVETRFFI 213
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 133/208 (63%), Gaps = 10/208 (4%)
Query: 22 TRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLID 81
R A+F P++WGD FLS++ + + + + + LK++ R ML A K + T L+LID
Sbjct: 1 VRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADT-LNLID 59
Query: 82 DIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISAA 141
I+RLG+SYHFE EID+IL +++ N +C+ +L +LQFRLLRQ+G+ IS
Sbjct: 60 TIERLGISYHFEKEIDDILDQIYNQNSNCN--------DLCTSALQFRLLRQHGFNISP- 110
Query: 142 DVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTSQSN 201
++F+ F+D NG FK L D+ G+L+LYEA+H+R H ++IL +AL F+ HLES
Sbjct: 111 EIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLK 170
Query: 202 TQLAAQVNRALNRPIRKSLPRLEAKHYM 229
+ L QV AL + + K +PR+E + ++
Sbjct: 171 SPLREQVTHALEQCLHKGVPRVETRFFI 198
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 123/215 (57%), Gaps = 13/215 (6%)
Query: 22 TRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQ---TKLD 78
RRSA+++P W DY + D ES + +++ K++ +R +IN T L+
Sbjct: 14 ARRSADYEPNSW-DYDFLLSSDTDESIEV---YKDKAKKLEAEVRREINNEKAEFLTLLE 69
Query: 79 LIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKI 138
LID++QRLG+ Y FES+I L + + D L+ +L FRLLRQ+G+++
Sbjct: 70 LIDNVQRLGLGYRFESDIRRALDRFVSSGG----FDGVTKTSLHATALSFRLLRQHGFEV 125
Query: 139 SAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTS 198
S + F+ FKD NGNF LK D + +LSLYEA+ L + GENIL+EA F ++HL+ +
Sbjct: 126 SQ-EAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSE 184
Query: 199 QS-NTQLAAQVNRALNRPIRKSLPRLEAKHYMPIY 232
+ +LA QVN AL P+ + RLEA + Y
Sbjct: 185 EKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAY 219
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 118/215 (54%), Gaps = 11/215 (5%)
Query: 23 RRSANFDPTIWGDYFL-SYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQT--KLDL 79
RRS N++P+ W F+ S D+KE KH E+ T+++ ++ K + +L+L
Sbjct: 2 RRSGNYNPSRWDVNFIQSLLSDYKED-----KHVIRASELVTLVKMELEKETDQIRQLEL 56
Query: 80 IDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKIS 139
IDD+QR+G+S HF++E EIL ++ + + ++LY SL FRLLR++G+++
Sbjct: 57 IDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQV- 115
Query: 140 AADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTSQ 199
A +VF+SFK+ G FK L D RG+L LYEA+ L GE L A F LE ++
Sbjct: 116 AQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNE 175
Query: 200 SNT--QLAAQVNRALNRPIRKSLPRLEAKHYMPIY 232
L ++ +L+ P+ + R A ++ Y
Sbjct: 176 GGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWY 210
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 120/221 (54%), Gaps = 11/221 (4%)
Query: 18 EKESTRRSANFDPTIW-GDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTK 76
E RRS N+ P +W +Y S + E K EL ++R +L+ + +P Q +
Sbjct: 1 EAHQIRRSGNYQPALWDSNYIQSLNTPYTEERHLDRK-AELIVQVRILLKEKM-EPVQ-Q 57
Query: 77 LDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGY 136
L+LI D++ LG+S F+ EI EIL ++ ++ C ++ +LY+ +L FRLLRQ+G+
Sbjct: 58 LELIHDLKYLGLSDFFQDEIKEILGVIYNEHK-CFHNNEVEKMDLYFTALGFRLLRQHGF 116
Query: 137 KISAADVFNSFKDSNG-NFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLES 195
IS DVFN FK+ G +FK+ L +D +GML LYEA+ L GE+ L A F L+
Sbjct: 117 NISQ-DVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQK 175
Query: 196 FTSQSNTQ----LAAQVNRALNRPIRKSLPRLEAKHYMPIY 232
+ + L + +L+ P+ + +EA+ ++ Y
Sbjct: 176 KLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAY 216
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 13/212 (6%)
Query: 24 RSANFDPTIWG-DYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDD 82
R+ + PT+W S+ ++KE ++ + +++ ML+ +++ S +L+LIDD
Sbjct: 36 RTGGYQPTLWDFSTIQSFDSEYKEEKHL-MRAAGMIDQVKMMLQEEVD--SIRRLELIDD 92
Query: 83 IQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISAAD 142
++RLG+S HFE EI EIL + N + D D LY +L+FRLLRQ + +S +
Sbjct: 93 LRRLGISCHFEREIVEILNSKYYTNNEIDERD------LYSTALRFRLLRQYDFSVS-QE 145
Query: 143 VFNSFKDSNG-NFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLES-FTSQS 200
VF+ FK++ G +FK L D RG+L LYEA+ L GE L A F L+
Sbjct: 146 VFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDK 205
Query: 201 NTQLAAQVNRALNRPIRKSLPRLEAKHYMPIY 232
+ L + + RAL P + A+ ++ Y
Sbjct: 206 DINLLSSIERALELPTHWRVQMPNARSFIDAY 237
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 95/170 (55%), Gaps = 14/170 (8%)
Query: 76 KLDLIDDIQRLGVSYHFESEIDEILQKM--HEANQDCDLGDDENVQELYYISLQFRLLRQ 133
+L ++D+I RLG+ HFE EI E L + H + G + +L +L FRLLR
Sbjct: 301 RLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRL 360
Query: 134 NGYKISAADVFNSFKDSNGNF---KSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTV 190
+ Y +S A +F++FKD+NG F +D+ ML+LY A+ L GENIL+EA +F
Sbjct: 361 HRYNVSPA-IFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFAT 419
Query: 191 THL-------ESFTSQSNTQ-LAAQVNRALNRPIRKSLPRLEAKHYMPIY 232
+L E+ ++ +N Q L+ ++ AL S+PR+EAK Y +Y
Sbjct: 420 KYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVY 469
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 9/165 (5%)
Query: 76 KLDLIDDIQRLGVSYHFESEIDEILQKM--HEANQDCDLGDDENVQELYYISLQFRLLRQ 133
+L L+D+I+ LG+ HF+ EI L + H + + G D V +L +L R LR
Sbjct: 249 RLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRM 308
Query: 134 NGYKISAADVFNSFKDSNGNFKSFLKR---DIRGMLSLYEAAHLRVHGENILNEALTFTV 190
+GY +S+ DV N+FKD NG F S + ++R +++L+ A+ L E +++A F
Sbjct: 309 HGYNVSS-DVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAE 367
Query: 191 THL-ESFTSQ--SNTQLAAQVNRALNRPIRKSLPRLEAKHYMPIY 232
+L E+ ++ +NT+L ++ + P S+PRLEA+ Y+ Y
Sbjct: 368 PYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSY 412
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 90/180 (50%), Gaps = 20/180 (11%)
Query: 72 PSQTKLDL------IDDIQRLGVSYHFESEIDEILQKM--HEANQDCDLGDDENVQELYY 123
P LDL +D ++RLG+ HF+ EI E L + H + + V ++
Sbjct: 263 PCHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDD 322
Query: 124 ISLQFRLLRQNGYKISAADVFNSFKDSNGNFKSFLKRDIRG---MLSLYEAAHLRVHGEN 180
++ R+LR +GY +S+ DV +F+D NG F FL + RG ML++ +H+ GE
Sbjct: 323 TAMGLRILRLHGYNVSS-DVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGET 381
Query: 181 ILNEALTFTVTHL-------ESFTSQS-NTQLAAQVNRALNRPIRKSLPRLEAKHYMPIY 232
I+ EA T +L ++F + + +V AL P KS+PRLEA+ Y+ Y
Sbjct: 382 IMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENY 441
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 87/167 (52%), Gaps = 15/167 (8%)
Query: 79 LIDDIQRLGVSYHFESEIDEILQKMHEANQDCDL--GDDENVQELYYISLQFRLLRQNGY 136
++D +QRLG+S +FE EI E L +H D + +VQ++ ++ FRLLRQ+GY
Sbjct: 251 IVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGY 310
Query: 137 KISAADVFNSFKDSNGNFKSFLKRD---IRGMLSLYEAAHLRVHGENILNEALTFTVTHL 193
++S ADVF +F + G F F+ + + GM +LY A+ L E IL A F+ +L
Sbjct: 311 QVS-ADVFKNF-EKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYL 368
Query: 194 ------ESFTSQSNTQ--LAAQVNRALNRPIRKSLPRLEAKHYMPIY 232
E + L ++ AL P SLPR+E + Y+ Y
Sbjct: 369 LEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQY 415
>pdb|2V71|A Chain A, Coiled-Coil Region Of Nudel
pdb|2V71|B Chain B, Coiled-Coil Region Of Nudel
Length = 189
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 29 DPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRL 86
+ W + Y F+E+ D V+ QE +E+ L A + + Q DL D QRL
Sbjct: 11 ETAYWKELSXKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRL 68
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 136 YKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLES 195
Y+ D+ N K +G+FK L ++ GM ++ + H+ + E ++ + F++ HL
Sbjct: 260 YEYETEDLLNLAK--HGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVD 317
Query: 196 FTSQSNT 202
F ++ T
Sbjct: 318 FLTKGET 324
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 144 FNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLR 175
N+FKD N F SF+++ ++ +E H+R
Sbjct: 221 LNAFKDLNEKFYSFMQKMVKEHYKTFEKGHIR 252
>pdb|2PLI|A Chain A, Crystal Structure Of Putative Mg2+ And Co2+
Transporter(Corc) Associated Region From Neisseria
Meningitidis Mc58
pdb|2PLI|B Chain B, Crystal Structure Of Putative Mg2+ And Co2+
Transporter(Corc) Associated Region From Neisseria
Meningitidis Mc58
pdb|2PLI|C Chain C, Crystal Structure Of Putative Mg2+ And Co2+
Transporter(Corc) Associated Region From Neisseria
Meningitidis Mc58
pdb|2PLI|D Chain D, Crystal Structure Of Putative Mg2+ And Co2+
Transporter(Corc) Associated Region From Neisseria
Meningitidis Mc58
Length = 91
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%)
Query: 136 YKISAADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTV 190
++I AA G S + D G L + E HL V GE +L L FTV
Sbjct: 20 WRIHAATEIEDINTFFGTEYSSEEADTIGGLVIQELGHLPVRGEKVLIGGLQFTV 74
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 34 GDYFLSYTG--DFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDD 82
G + S TG A++ Q +K+E + +L+++ +Q K+DL+D+
Sbjct: 1 GSHMASMTGGQQMGRGSMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE 51
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 48 GDASVKHQELKKEIRTMLRADINKPSQTKLDLIDD 82
G A++ Q +K+E + +L+++ +Q K+DL+D+
Sbjct: 1 GMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,517,563
Number of Sequences: 62578
Number of extensions: 257546
Number of successful extensions: 793
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 705
Number of HSP's gapped (non-prelim): 43
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)