Query 044482
Match_columns 345
No_of_seqs 242 out of 1975
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:38:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 4.4E-47 9.6E-52 342.0 19.1 315 18-343 12-342 (342)
2 PF00891 Methyltransf_2: O-met 100.0 3E-42 6.4E-47 308.7 15.1 226 89-320 2-241 (241)
3 TIGR02716 C20_methyl_CrtF C-20 100.0 3E-39 6.6E-44 299.0 17.3 282 25-330 3-305 (306)
4 COG2226 UbiE Methylase involve 99.8 3.9E-18 8.6E-23 149.6 16.0 164 170-343 43-237 (238)
5 TIGR00740 methyltransferase, p 99.8 1.2E-18 2.7E-23 155.6 8.5 156 178-342 52-238 (239)
6 PLN02233 ubiquinone biosynthes 99.8 6.1E-17 1.3E-21 146.3 17.8 157 177-341 71-259 (261)
7 PF01209 Ubie_methyltran: ubiE 99.7 2.4E-18 5.2E-23 152.3 6.8 165 170-343 39-233 (233)
8 PRK15451 tRNA cmo(5)U34 methyl 99.7 7.4E-18 1.6E-22 151.3 9.6 161 178-343 55-242 (247)
9 PTZ00098 phosphoethanolamine N 99.7 1.3E-16 2.8E-21 144.4 15.5 153 167-333 41-204 (263)
10 TIGR02752 MenG_heptapren 2-hep 99.7 1.8E-16 3.9E-21 140.9 16.1 166 168-343 35-231 (231)
11 PRK14103 trans-aconitate 2-met 99.7 3.9E-16 8.5E-21 140.8 16.2 156 167-329 18-182 (255)
12 PLN02244 tocopherol O-methyltr 99.7 9.6E-16 2.1E-20 143.7 17.0 148 178-333 117-280 (340)
13 PLN02490 MPBQ/MSBQ methyltrans 99.7 9.1E-16 2E-20 142.2 14.8 144 170-333 104-258 (340)
14 KOG1540 Ubiquinone biosynthesi 99.7 3.1E-15 6.8E-20 129.2 15.2 165 153-328 74-278 (296)
15 PRK00216 ubiE ubiquinone/menaq 99.7 7.2E-15 1.6E-19 130.9 18.1 166 169-344 42-239 (239)
16 PLN02336 phosphoethanolamine N 99.6 5.7E-15 1.2E-19 145.0 15.3 148 168-332 256-415 (475)
17 PRK06922 hypothetical protein; 99.6 3.4E-15 7.5E-20 146.5 12.8 140 139-283 377-543 (677)
18 PRK15068 tRNA mo(5)U34 methylt 99.6 6.5E-15 1.4E-19 136.8 14.0 150 169-333 113-276 (322)
19 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 2.1E-14 4.6E-19 126.5 16.1 162 169-343 30-223 (223)
20 TIGR00452 methyltransferase, p 99.6 1E-14 2.2E-19 134.2 14.1 149 169-333 112-275 (314)
21 PRK11873 arsM arsenite S-adeno 99.6 1.9E-14 4.1E-19 131.1 14.0 142 177-331 75-230 (272)
22 smart00828 PKS_MT Methyltransf 99.6 2E-14 4.3E-19 127.2 13.2 133 181-333 1-146 (224)
23 PRK11207 tellurite resistance 99.6 4.5E-14 9.8E-19 122.4 13.7 137 168-329 20-168 (197)
24 PLN02396 hexaprenyldihydroxybe 99.6 1.1E-14 2.4E-19 134.5 10.2 140 179-332 131-290 (322)
25 COG4106 Tam Trans-aconitate me 99.6 2E-14 4.3E-19 121.4 10.5 176 154-344 7-204 (257)
26 PRK08317 hypothetical protein; 99.6 9.7E-14 2.1E-18 123.5 15.5 154 169-332 10-177 (241)
27 PF12847 Methyltransf_18: Meth 99.6 9.9E-15 2.1E-19 114.5 7.9 93 180-275 2-110 (112)
28 PRK11036 putative S-adenosyl-L 99.6 2.8E-14 6E-19 128.8 11.9 152 169-334 36-210 (255)
29 PRK01683 trans-aconitate 2-met 99.6 1.7E-13 3.7E-18 123.8 16.9 150 167-326 20-182 (258)
30 PF13847 Methyltransf_31: Meth 99.5 6.2E-15 1.3E-19 122.4 4.8 135 179-323 3-152 (152)
31 PRK05785 hypothetical protein; 99.5 5.9E-13 1.3E-17 117.7 16.7 151 180-343 52-224 (226)
32 PF13489 Methyltransf_23: Meth 99.5 5.3E-14 1.2E-18 117.4 9.5 135 178-328 21-160 (161)
33 COG2230 Cfa Cyclopropane fatty 99.5 2.1E-13 4.6E-18 122.0 13.6 155 166-333 60-225 (283)
34 TIGR00477 tehB tellurite resis 99.5 3.1E-13 6.7E-18 117.0 13.4 137 169-330 21-168 (195)
35 PF02353 CMAS: Mycolic acid cy 99.5 1.6E-13 3.5E-18 124.2 12.1 158 167-333 51-219 (273)
36 TIGR02021 BchM-ChlM magnesium 99.5 5.9E-13 1.3E-17 117.4 15.1 178 142-333 17-208 (219)
37 PF08241 Methyltransf_11: Meth 99.5 6.1E-14 1.3E-18 106.2 7.0 85 184-274 1-95 (95)
38 PRK06202 hypothetical protein; 99.5 8.2E-13 1.8E-17 117.5 14.4 141 178-332 59-223 (232)
39 TIGR03438 probable methyltrans 99.5 1.2E-12 2.6E-17 120.8 14.0 130 138-275 27-176 (301)
40 PF08242 Methyltransf_12: Meth 99.4 8.8E-14 1.9E-18 106.8 4.3 84 184-272 1-99 (99)
41 TIGR02072 BioC biotin biosynth 99.4 3.1E-12 6.8E-17 113.8 14.8 132 180-330 35-175 (240)
42 PRK10258 biotin biosynthesis p 99.4 4.1E-12 8.9E-17 114.4 15.3 145 166-326 30-182 (251)
43 PRK12335 tellurite resistance 99.4 2.6E-12 5.6E-17 117.9 14.0 128 179-330 120-258 (287)
44 TIGR03587 Pse_Me-ase pseudamin 99.4 1.5E-12 3.3E-17 113.2 11.7 99 178-282 42-147 (204)
45 PRK08287 cobalt-precorrin-6Y C 99.4 1.8E-12 3.8E-17 111.5 12.0 123 170-331 23-156 (187)
46 PLN02336 phosphoethanolamine N 99.4 1.9E-12 4.1E-17 127.2 13.4 140 168-328 27-179 (475)
47 PRK07580 Mg-protoporphyrin IX 99.4 7.6E-12 1.7E-16 110.9 16.0 142 178-333 62-216 (230)
48 PF13649 Methyltransf_25: Meth 99.4 2.1E-13 4.5E-18 105.2 5.1 85 183-270 1-101 (101)
49 smart00138 MeTrc Methyltransfe 99.4 1.9E-12 4.1E-17 117.1 11.8 95 178-275 98-241 (264)
50 PRK04266 fibrillarin; Provisio 99.4 6E-12 1.3E-16 111.0 14.4 141 173-343 67-225 (226)
51 TIGR00537 hemK_rel_arch HemK-r 99.4 6.1E-12 1.3E-16 107.4 13.5 130 179-343 19-177 (179)
52 PRK11705 cyclopropane fatty ac 99.4 1.6E-11 3.4E-16 116.7 15.4 150 168-333 157-314 (383)
53 PF08003 Methyltransf_9: Prote 99.3 9.6E-12 2.1E-16 111.5 11.8 150 168-333 105-269 (315)
54 COG2227 UbiG 2-polyprenyl-3-me 99.3 2.1E-12 4.5E-17 111.9 5.0 139 180-332 60-216 (243)
55 PLN03075 nicotianamine synthas 99.3 1.3E-11 2.7E-16 111.9 10.1 94 178-275 122-232 (296)
56 PRK09489 rsmC 16S ribosomal RN 99.3 1.2E-10 2.6E-15 108.9 16.3 103 169-275 187-302 (342)
57 PRK15001 SAM-dependent 23S rib 99.3 2.4E-11 5.2E-16 114.4 11.3 104 168-275 218-339 (378)
58 PF05891 Methyltransf_PK: AdoM 99.3 6.7E-12 1.5E-16 107.6 6.7 137 179-334 55-204 (218)
59 PF06080 DUF938: Protein of un 99.3 1.4E-10 3E-15 99.1 14.5 159 178-343 23-204 (204)
60 PLN02585 magnesium protoporphy 99.3 5.3E-11 1.2E-15 109.8 12.9 134 180-332 145-300 (315)
61 PRK00107 gidB 16S rRNA methylt 99.3 2.5E-10 5.5E-15 97.7 16.1 125 179-343 45-186 (187)
62 TIGR00138 gidB 16S rRNA methyl 99.3 1.3E-10 2.8E-15 99.2 13.6 87 180-275 43-141 (181)
63 KOG1270 Methyltransferases [Co 99.3 1.2E-11 2.5E-16 108.0 7.1 137 181-331 91-249 (282)
64 PRK05134 bifunctional 3-demeth 99.2 1E-10 2.2E-15 104.1 12.8 140 179-331 48-205 (233)
65 TIGR02081 metW methionine bios 99.2 1.2E-10 2.6E-15 100.6 12.7 139 179-333 13-169 (194)
66 TIGR03840 TMPT_Se_Te thiopurin 99.2 4.8E-10 1E-14 98.1 14.8 128 178-330 33-186 (213)
67 TIGR01983 UbiG ubiquinone bios 99.2 2.1E-10 4.6E-15 101.3 12.6 140 179-332 45-204 (224)
68 TIGR02469 CbiT precorrin-6Y C5 99.2 1.7E-10 3.6E-15 91.8 10.4 98 169-275 10-121 (124)
69 TIGR03534 RF_mod_PrmC protein- 99.2 4.6E-10 1E-14 100.8 13.8 119 180-332 88-242 (251)
70 PTZ00146 fibrillarin; Provisio 99.2 1.1E-09 2.4E-14 98.9 16.0 139 177-343 130-286 (293)
71 PF07021 MetW: Methionine bios 99.2 3.9E-10 8.5E-15 95.0 11.7 142 178-334 12-170 (193)
72 PF05175 MTS: Methyltransferas 99.2 1.5E-10 3.3E-15 97.9 9.1 102 170-275 23-139 (170)
73 KOG4300 Predicted methyltransf 99.1 7E-10 1.5E-14 93.4 12.0 170 153-334 51-235 (252)
74 PF05401 NodS: Nodulation prot 99.1 1.2E-10 2.6E-15 98.3 7.5 132 173-332 38-180 (201)
75 PRK00121 trmB tRNA (guanine-N( 99.1 1.5E-10 3.3E-15 100.6 8.4 94 179-275 40-155 (202)
76 COG2813 RsmC 16S RNA G1207 met 99.1 2.4E-09 5.1E-14 96.4 15.7 104 168-275 148-265 (300)
77 PF03848 TehB: Tellurite resis 99.1 2.4E-10 5.3E-15 97.4 8.6 105 168-279 20-135 (192)
78 PF12147 Methyltransf_20: Puta 99.1 3.7E-09 8.1E-14 94.1 15.7 151 179-343 135-311 (311)
79 KOG2361 Predicted methyltransf 99.1 5.4E-10 1.2E-14 96.4 9.9 143 181-329 73-235 (264)
80 PRK13255 thiopurine S-methyltr 99.1 2.4E-09 5.1E-14 94.1 14.0 129 177-331 35-190 (218)
81 PRK14968 putative methyltransf 99.1 3E-09 6.6E-14 91.1 14.5 121 178-333 22-175 (188)
82 PRK09328 N5-glutamine S-adenos 99.1 3.2E-09 7E-14 96.8 15.1 132 177-342 106-274 (275)
83 TIGR00091 tRNA (guanine-N(7)-) 99.1 2.7E-10 5.9E-15 98.5 7.6 93 179-275 16-131 (194)
84 PLN02232 ubiquinone biosynthes 99.1 4.6E-10 9.9E-15 94.0 8.0 121 207-335 1-151 (160)
85 TIGR03533 L3_gln_methyl protei 99.0 5E-09 1.1E-13 95.8 13.5 94 179-275 121-250 (284)
86 PRK13944 protein-L-isoaspartat 99.0 2.6E-09 5.7E-14 93.1 10.4 96 168-275 62-172 (205)
87 PRK14121 tRNA (guanine-N(7)-)- 99.0 2.7E-09 5.8E-14 100.3 10.7 102 169-275 113-234 (390)
88 PRK11088 rrmA 23S rRNA methylt 99.0 2.1E-09 4.6E-14 97.9 9.8 85 179-275 85-180 (272)
89 PRK14966 unknown domain/N5-glu 99.0 1.5E-08 3.2E-13 96.0 15.4 133 179-345 251-420 (423)
90 PRK11188 rrmJ 23S rRNA methylt 99.0 4.9E-09 1.1E-13 91.6 11.4 103 169-275 41-164 (209)
91 COG4123 Predicted O-methyltran 99.0 7.7E-09 1.7E-13 91.2 12.5 140 171-344 36-213 (248)
92 PRK13942 protein-L-isoaspartat 99.0 3.8E-09 8.2E-14 92.6 10.6 97 167-275 65-175 (212)
93 PRK07402 precorrin-6B methylas 99.0 5.8E-09 1.3E-13 90.3 10.7 96 170-275 32-141 (196)
94 PRK00517 prmA ribosomal protei 98.9 1.3E-08 2.9E-13 91.5 13.0 122 178-338 118-245 (250)
95 PRK00377 cbiT cobalt-precorrin 98.9 1.3E-08 2.9E-13 88.2 12.2 96 171-275 33-144 (198)
96 PRK04457 spermidine synthase; 98.9 3.3E-09 7.2E-14 95.9 8.1 93 179-275 66-176 (262)
97 TIGR00080 pimt protein-L-isoas 98.9 8.7E-09 1.9E-13 90.5 10.6 96 168-275 67-176 (215)
98 PRK11805 N5-glutamine S-adenos 98.9 4.7E-09 1E-13 97.0 9.2 92 181-275 135-262 (307)
99 PHA03411 putative methyltransf 98.9 1.1E-08 2.3E-13 91.6 10.7 120 180-326 65-209 (279)
100 PRK14967 putative methyltransf 98.9 3.4E-08 7.4E-13 87.3 13.8 95 177-275 34-158 (223)
101 KOG2899 Predicted methyltransf 98.9 2.8E-08 6E-13 85.9 12.3 139 177-327 56-253 (288)
102 PF05148 Methyltransf_8: Hypot 98.9 2.1E-08 4.6E-13 85.4 11.4 165 138-344 27-198 (219)
103 cd02440 AdoMet_MTases S-adenos 98.9 1E-08 2.2E-13 77.8 8.7 89 182-275 1-103 (107)
104 TIGR00536 hemK_fam HemK family 98.9 1.6E-08 3.4E-13 92.7 11.4 92 181-275 116-243 (284)
105 COG2242 CobL Precorrin-6B meth 98.9 1.9E-08 4.1E-13 84.4 9.9 95 171-275 27-134 (187)
106 TIGR03704 PrmC_rel_meth putati 98.9 8.5E-08 1.8E-12 86.2 14.9 93 180-275 87-215 (251)
107 TIGR01177 conserved hypothetic 98.8 2.6E-08 5.6E-13 93.2 10.9 100 170-275 174-293 (329)
108 PF13659 Methyltransf_26: Meth 98.8 7E-09 1.5E-13 81.8 5.7 91 181-275 2-114 (117)
109 TIGR00438 rrmJ cell division p 98.8 3.8E-08 8.3E-13 84.6 10.7 102 170-275 23-145 (188)
110 PRK01544 bifunctional N5-gluta 98.8 8.7E-08 1.9E-12 94.4 13.9 129 180-342 139-305 (506)
111 TIGR00406 prmA ribosomal prote 98.8 4.1E-08 9E-13 90.1 10.4 95 170-275 152-258 (288)
112 PF01739 CheR: CheR methyltran 98.7 3.1E-08 6.6E-13 85.3 8.0 94 179-275 31-174 (196)
113 PRK13256 thiopurine S-methyltr 98.7 1.8E-07 4E-12 82.0 12.5 96 178-279 42-165 (226)
114 PRK00312 pcm protein-L-isoaspa 98.7 1.1E-07 2.4E-12 83.3 10.6 93 169-275 69-174 (212)
115 KOG3045 Predicted RNA methylas 98.7 6.1E-07 1.3E-11 78.4 14.0 161 140-344 137-304 (325)
116 PRK00811 spermidine synthase; 98.7 6.9E-08 1.5E-12 88.3 8.5 95 178-275 75-190 (283)
117 PF05219 DREV: DREV methyltran 98.7 1.3E-07 2.9E-12 83.3 9.6 146 180-334 95-243 (265)
118 PRK10611 chemotaxis methyltran 98.7 8E-08 1.7E-12 87.4 8.5 93 180-275 116-261 (287)
119 PF05724 TPMT: Thiopurine S-me 98.7 1.4E-07 3E-12 82.7 9.5 129 177-331 35-190 (218)
120 COG1352 CheR Methylase of chem 98.6 3.9E-07 8.4E-12 81.9 12.1 133 140-275 45-240 (268)
121 COG2890 HemK Methylase of poly 98.6 1.7E-06 3.6E-11 78.9 15.8 127 182-342 113-275 (280)
122 PF08100 Dimerisation: Dimeris 98.6 2E-09 4.3E-14 71.0 -2.8 51 27-81 1-51 (51)
123 KOG1271 Methyltransferases [Ge 98.6 3.5E-07 7.6E-12 75.8 9.6 120 180-333 68-207 (227)
124 smart00650 rADc Ribosomal RNA 98.6 2.2E-07 4.7E-12 78.4 8.2 99 168-275 3-112 (169)
125 COG4976 Predicted methyltransf 98.6 1.5E-07 3.3E-12 80.7 7.0 141 170-333 117-267 (287)
126 PRK13943 protein-L-isoaspartat 98.6 2.9E-07 6.4E-12 85.3 9.2 95 169-275 71-179 (322)
127 PLN02366 spermidine synthase 98.6 2.7E-07 5.9E-12 85.0 9.0 94 178-275 90-205 (308)
128 PF08123 DOT1: Histone methyla 98.5 4.1E-07 9E-12 78.8 8.9 108 168-283 32-164 (205)
129 COG2264 PrmA Ribosomal protein 98.5 1.9E-06 4E-11 78.3 12.8 124 169-334 154-291 (300)
130 KOG3010 Methyltransferase [Gen 98.5 1.8E-07 3.9E-12 81.0 5.7 88 180-275 34-135 (261)
131 PF02390 Methyltransf_4: Putat 98.5 2.4E-07 5.1E-12 80.0 6.4 87 181-275 19-132 (195)
132 PLN02781 Probable caffeoyl-CoA 98.5 1.1E-06 2.3E-11 78.2 10.6 91 177-275 66-177 (234)
133 PRK01581 speE spermidine synth 98.5 4.3E-07 9.2E-12 84.5 8.2 95 178-275 149-267 (374)
134 PF06325 PrmA: Ribosomal prote 98.5 6.1E-07 1.3E-11 82.0 9.0 143 154-343 139-294 (295)
135 TIGR00417 speE spermidine synt 98.5 4.9E-07 1.1E-11 82.2 8.0 95 178-275 71-185 (270)
136 PF04672 Methyltransf_19: S-ad 98.5 5E-07 1.1E-11 80.5 7.7 138 179-328 68-233 (267)
137 PF01135 PCMT: Protein-L-isoas 98.4 5.2E-07 1.1E-11 78.6 7.1 97 167-275 61-171 (209)
138 PRK10901 16S rRNA methyltransf 98.4 1.2E-06 2.5E-11 85.0 9.7 105 169-278 235-373 (427)
139 COG2518 Pcm Protein-L-isoaspar 98.4 2.3E-06 4.9E-11 73.5 10.0 95 167-275 61-168 (209)
140 TIGR00563 rsmB ribosomal RNA s 98.4 2.7E-06 5.8E-11 82.5 11.6 108 169-281 229-372 (426)
141 PF11968 DUF3321: Putative met 98.4 7.9E-06 1.7E-10 70.3 12.4 119 181-333 53-183 (219)
142 KOG1541 Predicted protein carb 98.4 1.3E-06 2.7E-11 74.7 7.5 101 169-275 39-159 (270)
143 PRK14902 16S rRNA methyltransf 98.4 1.8E-06 4E-11 84.1 9.5 105 170-279 242-381 (444)
144 PRK14904 16S rRNA methyltransf 98.3 4.6E-06 1E-10 81.3 12.0 100 177-280 248-380 (445)
145 PRK03612 spermidine synthase; 98.3 2E-06 4.3E-11 85.3 8.7 94 178-275 296-414 (521)
146 PHA03412 putative methyltransf 98.3 3.5E-06 7.5E-11 74.0 8.7 86 180-265 50-155 (241)
147 COG0220 Predicted S-adenosylme 98.3 3.1E-06 6.8E-11 74.4 8.5 134 181-329 50-220 (227)
148 PLN02672 methionine S-methyltr 98.3 7.1E-06 1.5E-10 86.5 12.2 61 181-241 120-210 (1082)
149 PF03291 Pox_MCEL: mRNA cappin 98.3 3.5E-06 7.7E-11 78.4 8.8 93 179-275 62-185 (331)
150 PRK14901 16S rRNA methyltransf 98.3 4E-06 8.6E-11 81.5 9.2 106 170-280 244-387 (434)
151 TIGR00755 ksgA dimethyladenosi 98.2 4.4E-06 9.5E-11 75.3 8.4 88 167-261 18-116 (253)
152 COG3963 Phospholipid N-methylt 98.2 1.2E-05 2.6E-10 65.9 9.0 109 163-275 33-155 (194)
153 PRK13168 rumA 23S rRNA m(5)U19 98.2 1.1E-05 2.4E-10 78.6 10.6 97 167-275 286-399 (443)
154 PRK00274 ksgA 16S ribosomal RN 98.2 5.4E-06 1.2E-10 75.5 7.8 79 167-249 31-119 (272)
155 PRK14903 16S rRNA methyltransf 98.2 6.1E-06 1.3E-10 80.0 8.6 105 171-280 230-369 (431)
156 TIGR03439 methyl_EasF probable 98.2 1.3E-05 2.9E-10 74.1 10.3 109 167-281 67-202 (319)
157 PRK14896 ksgA 16S ribosomal RN 98.2 9.2E-06 2E-10 73.4 9.0 81 167-251 18-107 (258)
158 TIGR00446 nop2p NOL1/NOP2/sun 98.1 2E-05 4.4E-10 71.4 10.9 100 177-280 69-202 (264)
159 COG2519 GCD14 tRNA(1-methylade 98.1 2.4E-05 5.2E-10 68.8 9.6 107 158-275 70-194 (256)
160 KOG1331 Predicted methyltransf 98.1 7.1E-06 1.5E-10 73.1 6.0 90 179-275 45-142 (293)
161 PRK11727 23S rRNA mA1618 methy 98.0 1.8E-05 3.9E-10 73.2 8.4 141 179-332 114-293 (321)
162 KOG1500 Protein arginine N-met 98.0 3.4E-05 7.3E-10 70.0 9.2 100 169-273 168-279 (517)
163 PF09243 Rsm22: Mitochondrial 98.0 4E-05 8.7E-10 69.8 9.6 106 168-280 23-142 (274)
164 PRK04148 hypothetical protein; 98.0 6.7E-05 1.5E-09 60.1 9.1 94 169-275 7-108 (134)
165 KOG1975 mRNA cap methyltransfe 97.9 4.8E-05 1E-09 68.8 9.0 94 178-275 116-236 (389)
166 PF01596 Methyltransf_3: O-met 97.9 2.2E-05 4.9E-10 68.1 6.9 93 177-279 43-156 (205)
167 PTZ00338 dimethyladenosine tra 97.9 3.7E-05 8.1E-10 70.6 8.4 86 167-256 25-122 (294)
168 PRK10909 rsmD 16S rRNA m(2)G96 97.9 4.9E-05 1.1E-09 65.7 8.6 90 179-275 53-158 (199)
169 PLN02476 O-methyltransferase 97.9 6.1E-05 1.3E-09 68.2 9.5 91 177-275 116-227 (278)
170 PRK01544 bifunctional N5-gluta 97.9 2.7E-05 5.9E-10 77.0 7.7 88 180-275 348-461 (506)
171 PF08704 GCD14: tRNA methyltra 97.9 4.9E-05 1.1E-09 67.7 8.6 98 167-275 29-145 (247)
172 PF10294 Methyltransf_16: Puta 97.9 3.6E-05 7.8E-10 65.2 6.7 93 178-275 44-155 (173)
173 COG0421 SpeE Spermidine syntha 97.9 5.3E-05 1.1E-09 68.9 8.2 94 178-275 75-189 (282)
174 PLN02823 spermine synthase 97.9 4.6E-05 1E-09 71.1 8.0 93 179-275 103-219 (336)
175 KOG2940 Predicted methyltransf 97.9 0.00012 2.7E-09 63.1 9.6 137 179-329 72-225 (325)
176 PF05185 PRMT5: PRMT5 arginine 97.8 5.8E-05 1.3E-09 73.2 8.3 124 141-271 152-292 (448)
177 PRK03522 rumB 23S rRNA methylu 97.8 7.9E-05 1.7E-09 69.3 8.9 60 180-241 174-247 (315)
178 PRK11783 rlmL 23S rRNA m(2)G24 97.8 7.7E-05 1.7E-09 76.7 9.6 93 179-275 538-655 (702)
179 TIGR00478 tly hemolysin TlyA f 97.8 0.0002 4.4E-09 63.2 10.8 143 167-333 63-219 (228)
180 PF03141 Methyltransf_29: Puta 97.8 1.3E-05 2.9E-10 76.7 3.3 89 179-275 117-218 (506)
181 PRK15128 23S rRNA m(5)C1962 me 97.8 0.00016 3.5E-09 69.2 10.4 93 179-275 220-338 (396)
182 PF04816 DUF633: Family of unk 97.8 0.00027 5.9E-09 61.3 10.6 123 183-344 1-140 (205)
183 KOG1661 Protein-L-isoaspartate 97.8 6E-05 1.3E-09 64.2 6.2 88 177-275 80-192 (237)
184 TIGR00479 rumA 23S rRNA (uraci 97.8 0.00011 2.3E-09 71.6 8.8 95 169-275 283-395 (431)
185 COG2263 Predicted RNA methylas 97.7 6.4E-05 1.4E-09 63.2 5.7 65 179-244 45-118 (198)
186 COG4301 Uncharacterized conser 97.7 0.00021 4.5E-09 62.4 8.6 100 179-281 78-198 (321)
187 COG4122 Predicted O-methyltran 97.7 0.00014 3E-09 63.5 7.6 96 177-282 57-170 (219)
188 PRK00536 speE spermidine synth 97.6 0.00019 4.2E-09 64.5 8.0 85 177-275 70-170 (262)
189 PF01564 Spermine_synth: Sperm 97.6 6.1E-05 1.3E-09 67.4 4.7 95 178-275 75-190 (246)
190 COG2521 Predicted archaeal met 97.6 0.00092 2E-08 58.1 11.1 125 177-333 132-279 (287)
191 PLN02589 caffeoyl-CoA O-methyl 97.6 0.00029 6.3E-09 62.9 8.1 95 177-281 77-193 (247)
192 TIGR02085 meth_trns_rumB 23S r 97.5 0.00031 6.7E-09 67.0 8.1 86 180-275 234-333 (374)
193 KOG1499 Protein arginine N-met 97.4 0.00026 5.6E-09 65.1 6.1 90 179-272 60-163 (346)
194 PRK00050 16S rRNA m(4)C1402 me 97.4 0.00025 5.5E-09 64.9 5.9 63 167-230 8-79 (296)
195 COG4262 Predicted spermidine s 97.4 0.00044 9.6E-09 63.7 6.6 88 179-275 289-406 (508)
196 KOG2904 Predicted methyltransf 97.4 0.00055 1.2E-08 60.8 6.8 65 177-241 146-229 (328)
197 KOG3115 Methyltransferase-like 97.4 0.00029 6.3E-09 59.7 4.8 92 181-275 62-182 (249)
198 PF13679 Methyltransf_32: Meth 97.3 0.00059 1.3E-08 55.7 6.7 81 177-261 23-122 (141)
199 KOG3420 Predicted RNA methylas 97.3 0.00043 9.3E-09 55.6 5.1 73 169-244 39-124 (185)
200 TIGR00027 mthyl_TIGR00027 meth 97.3 0.0037 8E-08 56.5 11.9 142 179-329 81-248 (260)
201 COG0030 KsgA Dimethyladenosine 97.3 0.0015 3.2E-08 58.4 9.0 91 167-258 19-118 (259)
202 KOG0820 Ribosomal RNA adenine 97.3 0.00073 1.6E-08 59.9 6.5 71 167-240 47-129 (315)
203 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.2 0.00032 7E-09 62.7 4.2 91 223-331 138-239 (256)
204 TIGR00095 RNA methyltransferas 97.2 0.00077 1.7E-08 57.9 6.4 91 180-279 50-160 (189)
205 COG4798 Predicted methyltransf 97.2 0.0031 6.6E-08 53.3 9.6 137 177-332 46-206 (238)
206 COG5459 Predicted rRNA methyla 97.2 0.0004 8.6E-09 63.6 4.6 105 170-279 105-227 (484)
207 KOG3191 Predicted N6-DNA-methy 97.2 0.0068 1.5E-07 50.7 11.2 63 180-242 44-118 (209)
208 COG0293 FtsJ 23S rRNA methylas 97.2 0.0033 7.2E-08 54.1 9.7 105 167-275 33-158 (205)
209 PF02527 GidB: rRNA small subu 97.2 0.0012 2.6E-08 56.3 7.0 85 182-275 51-147 (184)
210 PF01728 FtsJ: FtsJ-like methy 97.1 0.00075 1.6E-08 57.4 5.3 104 168-275 10-138 (181)
211 PF00398 RrnaAD: Ribosomal RNA 97.1 0.0013 2.9E-08 59.4 7.0 90 165-261 17-119 (262)
212 PF01170 UPF0020: Putative RNA 97.1 0.003 6.5E-08 53.7 8.6 103 169-275 19-150 (179)
213 PF07942 N2227: N2227-like pro 97.1 0.021 4.6E-07 51.5 13.9 131 179-331 56-242 (270)
214 PF09445 Methyltransf_15: RNA 97.0 0.00041 8.9E-09 57.7 2.5 59 181-241 1-76 (163)
215 PLN02668 indole-3-acetate carb 97.0 0.022 4.8E-07 54.0 14.1 146 179-330 63-308 (386)
216 COG4076 Predicted RNA methylas 97.0 0.0011 2.4E-08 55.6 4.6 90 181-275 34-134 (252)
217 COG0500 SmtA SAM-dependent met 97.0 0.0065 1.4E-07 48.8 9.4 91 183-281 52-159 (257)
218 COG3315 O-Methyltransferase in 97.0 0.0032 6.9E-08 57.9 8.0 164 158-329 73-262 (297)
219 KOG3987 Uncharacterized conser 96.9 0.00026 5.6E-09 60.2 0.2 142 177-333 109-262 (288)
220 COG0357 GidB Predicted S-adeno 96.9 0.017 3.6E-07 50.4 11.3 129 180-345 68-214 (215)
221 PRK04338 N(2),N(2)-dimethylgua 96.9 0.0018 3.9E-08 61.8 5.6 86 181-275 59-157 (382)
222 TIGR01444 fkbM_fam methyltrans 96.7 0.0022 4.7E-08 52.1 4.5 38 182-219 1-39 (143)
223 COG2384 Predicted SAM-dependen 96.7 0.053 1.1E-06 47.0 12.9 127 179-344 16-159 (226)
224 PF03059 NAS: Nicotianamine sy 96.6 0.0054 1.2E-07 55.5 6.6 92 180-275 121-229 (276)
225 PF02475 Met_10: Met-10+ like- 96.5 0.0018 3.9E-08 55.9 2.9 87 177-272 99-198 (200)
226 KOG4589 Cell division protein 96.5 0.021 4.5E-07 48.1 8.8 45 170-214 60-105 (232)
227 TIGR02143 trmA_only tRNA (urac 96.4 0.0035 7.7E-08 59.2 4.5 48 181-230 199-256 (353)
228 PRK11783 rlmL 23S rRNA m(2)G24 96.4 0.02 4.4E-07 59.1 10.0 105 167-275 178-346 (702)
229 PRK11933 yebU rRNA (cytosine-C 96.4 0.013 2.7E-07 57.4 7.9 99 177-279 111-244 (470)
230 PF02384 N6_Mtase: N-6 DNA Met 96.3 0.0094 2E-07 55.3 6.3 96 177-275 44-182 (311)
231 PF04072 LCM: Leucine carboxyl 96.3 0.028 6.2E-07 47.9 8.7 82 179-260 78-183 (183)
232 PRK11760 putative 23S rRNA C24 96.2 0.023 5E-07 52.8 8.5 80 178-265 210-295 (357)
233 PF09339 HTH_IclR: IclR helix- 96.2 0.00028 6.1E-09 47.0 -2.9 44 38-89 8-51 (52)
234 PRK05031 tRNA (uracil-5-)-meth 96.1 0.0056 1.2E-07 58.1 4.2 48 181-230 208-265 (362)
235 KOG1269 SAM-dependent methyltr 96.1 0.0072 1.6E-07 57.0 4.6 96 181-283 112-221 (364)
236 PF00891 Methyltransf_2: O-met 96.1 0.0044 9.5E-08 55.3 2.8 76 3-78 56-141 (241)
237 KOG2798 Putative trehalase [Ca 96.0 0.13 2.9E-06 46.9 11.6 135 180-333 151-339 (369)
238 KOG1709 Guanidinoacetate methy 95.8 0.052 1.1E-06 46.8 7.9 110 159-275 83-205 (271)
239 TIGR02987 met_A_Alw26 type II 95.7 0.033 7.1E-07 55.6 7.8 63 179-241 31-119 (524)
240 COG3897 Predicted methyltransf 95.7 0.1 2.2E-06 44.5 9.1 98 177-282 77-184 (218)
241 PF01269 Fibrillarin: Fibrilla 95.7 0.13 2.8E-06 44.8 10.0 141 177-345 71-229 (229)
242 PF13578 Methyltransf_24: Meth 95.6 0.0076 1.7E-07 46.3 2.1 87 184-277 1-105 (106)
243 PF03492 Methyltransf_7: SAM d 95.6 0.12 2.7E-06 48.4 10.4 144 177-328 14-250 (334)
244 KOG2918 Carboxymethyl transfer 95.3 0.16 3.6E-06 46.2 9.6 151 169-332 80-278 (335)
245 COG1889 NOP1 Fibrillarin-like 95.2 0.8 1.7E-05 39.3 13.1 146 169-343 64-229 (231)
246 KOG3924 Putative protein methy 95.2 0.059 1.3E-06 50.6 6.9 107 168-282 182-313 (419)
247 KOG3201 Uncharacterized conser 95.1 0.017 3.7E-07 47.4 2.6 90 181-275 31-139 (201)
248 PF11312 DUF3115: Protein of u 95.0 0.036 7.7E-07 50.7 4.9 94 181-278 88-243 (315)
249 PF07091 FmrO: Ribosomal RNA m 95.0 0.027 5.8E-07 49.9 3.8 86 179-265 105-201 (251)
250 PF01861 DUF43: Protein of unk 94.7 0.58 1.3E-05 41.4 11.3 99 169-275 36-148 (243)
251 KOG2915 tRNA(1-methyladenosine 94.7 0.7 1.5E-05 41.5 11.7 112 154-275 77-209 (314)
252 TIGR00308 TRM1 tRNA(guanine-26 94.5 0.11 2.3E-06 49.5 6.9 86 181-275 46-146 (374)
253 TIGR02431 pcaR_pcaU beta-ketoa 94.5 0.0059 1.3E-07 54.8 -1.6 56 38-101 14-69 (248)
254 PF07757 AdoMet_MTase: Predict 94.5 0.056 1.2E-06 41.3 3.9 42 167-211 47-88 (112)
255 KOG1663 O-methyltransferase [S 94.5 0.19 4.1E-06 43.9 7.6 95 177-281 71-186 (237)
256 KOG2730 Methylase [General fun 94.3 0.037 7.9E-07 47.9 2.9 50 179-230 94-154 (263)
257 COG1092 Predicted SAM-dependen 93.9 0.28 6E-06 46.8 8.2 93 179-275 217-335 (393)
258 TIGR00006 S-adenosyl-methyltra 93.7 0.14 3E-06 47.1 5.8 63 167-230 9-80 (305)
259 COG1189 Predicted rRNA methyla 93.5 0.84 1.8E-05 40.2 9.8 148 168-333 68-226 (245)
260 KOG3178 Hydroxyindole-O-methyl 93.3 0.12 2.6E-06 47.9 4.6 99 1-101 131-239 (342)
261 PF03514 GRAS: GRAS domain fam 93.2 0.47 1E-05 45.3 8.6 109 167-282 99-248 (374)
262 PF06859 Bin3: Bicoid-interact 93.1 0.035 7.5E-07 42.7 0.7 86 236-333 3-94 (110)
263 COG4627 Uncharacterized protei 93.1 0.034 7.4E-07 45.4 0.7 37 236-275 49-85 (185)
264 smart00550 Zalpha Z-DNA-bindin 93.0 0.016 3.5E-07 40.8 -1.2 53 38-97 11-66 (68)
265 PF03141 Methyltransf_29: Puta 92.9 0.41 8.9E-06 46.6 7.7 129 177-343 363-506 (506)
266 COG1414 IclR Transcriptional r 92.9 0.014 3.1E-07 52.2 -2.1 56 38-101 9-66 (246)
267 PF01795 Methyltransf_5: MraW 92.8 0.17 3.7E-06 46.6 4.9 62 167-229 9-79 (310)
268 PF03602 Cons_hypoth95: Conser 92.8 0.12 2.7E-06 44.0 3.7 94 179-280 42-155 (183)
269 PRK11569 transcriptional repre 92.7 0.017 3.7E-07 52.6 -1.8 55 38-100 33-89 (274)
270 PRK10163 DNA-binding transcrip 92.7 0.018 3.9E-07 52.3 -1.6 55 38-100 30-86 (271)
271 smart00346 HTH_ICLR helix_turn 92.6 0.015 3.2E-07 43.3 -2.1 54 38-99 10-65 (91)
272 KOG2187 tRNA uracil-5-methyltr 92.1 0.15 3.2E-06 49.6 3.6 52 177-230 381-442 (534)
273 KOG4058 Uncharacterized conser 92.1 0.81 1.7E-05 37.2 7.2 102 167-282 61-177 (199)
274 COG2265 TrmA SAM-dependent met 91.7 0.28 6.2E-06 47.5 5.1 95 169-275 284-395 (432)
275 smart00419 HTH_CRP helix_turn_ 91.7 0.059 1.3E-06 34.6 0.3 41 49-96 8-48 (48)
276 PF05958 tRNA_U5-meth_tr: tRNA 91.7 0.14 3.1E-06 48.4 3.0 58 167-228 186-253 (352)
277 COG2520 Predicted methyltransf 91.6 0.46 1E-05 44.4 6.2 93 178-281 187-293 (341)
278 PRK09834 DNA-binding transcrip 91.6 0.032 6.9E-07 50.5 -1.4 56 38-101 16-73 (263)
279 COG0116 Predicted N6-adenine-s 91.3 0.52 1.1E-05 44.5 6.3 103 168-275 181-343 (381)
280 PRK15090 DNA-binding transcrip 91.3 0.035 7.7E-07 50.0 -1.5 55 38-101 19-75 (257)
281 KOG1099 SAM-dependent methyltr 91.0 0.89 1.9E-05 39.8 6.8 100 171-274 33-161 (294)
282 PF10354 DUF2431: Domain of un 91.0 3.2 7E-05 34.7 10.2 117 186-333 3-154 (166)
283 PF02082 Rrf2: Transcriptional 90.9 0.064 1.4E-06 39.3 -0.1 47 48-101 24-73 (83)
284 COG1041 Predicted DNA modifica 90.9 2.4 5.2E-05 39.6 10.1 94 177-275 195-309 (347)
285 PF04989 CmcI: Cephalosporin h 90.8 1.7 3.8E-05 37.5 8.5 96 180-281 33-151 (206)
286 PF13463 HTH_27: Winged helix 90.3 0.061 1.3E-06 37.5 -0.7 44 48-98 17-67 (68)
287 cd00092 HTH_CRP helix_turn_hel 90.1 0.097 2.1E-06 36.2 0.2 42 49-97 25-67 (67)
288 PF01978 TrmB: Sugar-specific 89.6 0.085 1.8E-06 37.0 -0.4 36 49-91 22-57 (68)
289 PRK01747 mnmC bifunctional tRN 89.3 0.83 1.8E-05 47.1 6.3 31 181-211 59-101 (662)
290 PF10672 Methyltrans_SAM: S-ad 89.2 0.5 1.1E-05 43.2 4.1 93 179-275 123-237 (286)
291 KOG1562 Spermidine synthase [A 88.9 0.8 1.7E-05 41.6 5.1 95 177-275 119-235 (337)
292 COG0275 Predicted S-adenosylme 88.8 0.97 2.1E-05 41.3 5.6 63 167-230 12-84 (314)
293 KOG2352 Predicted spermine/spe 88.5 1.6 3.5E-05 42.4 7.2 97 182-284 51-170 (482)
294 PF09012 FeoC: FeoC like trans 88.0 0.068 1.5E-06 37.7 -1.8 45 38-91 5-49 (69)
295 COG0742 N6-adenine-specific me 87.2 2.9 6.3E-05 35.6 7.2 93 179-275 43-153 (187)
296 TIGR02010 IscR iron-sulfur clu 86.3 0.29 6.2E-06 39.5 0.7 48 47-101 23-73 (135)
297 PF05711 TylF: Macrocin-O-meth 86.0 1.7 3.7E-05 38.9 5.5 93 181-278 76-213 (248)
298 PF12802 MarR_2: MarR family; 86.0 0.075 1.6E-06 36.3 -2.5 35 49-90 21-55 (62)
299 COG0144 Sun tRNA and rRNA cyto 85.5 10 0.00022 36.0 10.8 104 172-280 150-291 (355)
300 PF05430 Methyltransf_30: S-ad 84.3 3.5 7.6E-05 32.7 6.0 84 220-344 32-124 (124)
301 KOG2793 Putative N2,N2-dimethy 84.3 4.1 8.9E-05 36.4 7.0 93 177-275 83-198 (248)
302 PRK10857 DNA-binding transcrip 84.2 0.3 6.4E-06 40.8 -0.1 48 47-101 23-73 (164)
303 PF11899 DUF3419: Protein of u 84.1 1.6 3.4E-05 41.7 4.7 58 220-281 276-338 (380)
304 TIGR00738 rrf2_super rrf2 fami 83.7 0.33 7.1E-06 38.8 -0.1 47 48-101 24-73 (132)
305 PRK10742 putative methyltransf 83.3 2.6 5.7E-05 37.6 5.4 43 169-214 77-122 (250)
306 COG1959 Predicted transcriptio 82.7 0.43 9.3E-06 39.3 0.2 46 49-101 25-73 (150)
307 KOG2651 rRNA adenine N-6-methy 81.9 2.3 4.9E-05 40.1 4.6 45 169-214 143-187 (476)
308 COG1565 Uncharacterized conser 81.8 3.1 6.7E-05 39.1 5.5 63 147-214 50-121 (370)
309 PF12840 HTH_20: Helix-turn-he 81.5 0.2 4.3E-06 34.3 -1.8 54 27-90 5-58 (61)
310 COG1064 AdhP Zn-dependent alco 80.7 11 0.00024 35.3 8.8 89 177-279 164-261 (339)
311 PF07381 DUF1495: Winged helix 80.5 0.52 1.1E-05 35.0 -0.0 62 32-101 9-85 (90)
312 PF01189 Nol1_Nop2_Fmu: NOL1/N 80.4 5.6 0.00012 36.3 6.7 96 177-275 83-218 (283)
313 PF14947 HTH_45: Winged helix- 79.0 0.18 4E-06 36.4 -2.8 46 49-101 19-64 (77)
314 TIGR02337 HpaR homoprotocatech 78.6 0.28 6.1E-06 38.4 -2.1 60 32-101 28-94 (118)
315 TIGR02944 suf_reg_Xantho FeS a 78.5 0.56 1.2E-05 37.4 -0.5 44 47-97 23-69 (130)
316 smart00347 HTH_MARR helix_turn 78.0 0.29 6.4E-06 36.5 -2.1 58 34-101 12-76 (101)
317 PRK10141 DNA-binding transcrip 77.6 0.63 1.4E-05 36.5 -0.4 62 26-97 10-75 (117)
318 PRK03902 manganese transport t 77.5 0.49 1.1E-05 38.4 -1.1 46 49-101 22-68 (142)
319 PF13412 HTH_24: Winged helix- 77.2 0.16 3.5E-06 32.8 -3.2 43 35-87 6-48 (48)
320 cd08283 FDH_like_1 Glutathione 77.2 14 0.0003 35.2 8.7 96 177-278 182-307 (386)
321 KOG0822 Protein kinase inhibit 76.5 15 0.00033 36.3 8.5 119 141-270 334-472 (649)
322 PF05971 Methyltransf_10: Prot 76.4 3.8 8.2E-05 37.7 4.3 70 180-250 103-193 (299)
323 KOG1501 Arginine N-methyltrans 76.1 2.9 6.2E-05 40.2 3.5 84 181-265 68-166 (636)
324 PRK11014 transcriptional repre 76.0 1.1 2.4E-05 36.3 0.6 45 48-99 24-71 (141)
325 COG4190 Predicted transcriptio 75.9 0.67 1.5E-05 36.6 -0.6 56 25-90 57-112 (144)
326 PF12692 Methyltransf_17: S-ad 75.9 15 0.00033 30.0 7.1 119 153-280 5-137 (160)
327 PRK11920 rirA iron-responsive 75.7 0.94 2E-05 37.4 0.2 47 48-101 23-72 (153)
328 PF05206 TRM13: Methyltransfer 74.8 7.2 0.00016 35.2 5.6 35 177-211 16-55 (259)
329 cd01842 SGNH_hydrolase_like_5 74.4 8.3 0.00018 32.5 5.4 37 236-275 52-98 (183)
330 PF13601 HTH_34: Winged helix 73.0 0.19 4.1E-06 36.6 -4.1 58 34-101 2-67 (80)
331 cd00315 Cyt_C5_DNA_methylase C 72.9 40 0.00086 30.6 10.1 118 182-328 2-140 (275)
332 PF04703 FaeA: FaeA-like prote 72.6 0.95 2.1E-05 31.2 -0.5 36 48-90 14-49 (62)
333 TIGR01610 phage_O_Nterm phage 72.5 1.5 3.3E-05 32.9 0.6 42 48-96 46-89 (95)
334 PF01022 HTH_5: Bacterial regu 72.0 0.32 6.9E-06 31.3 -2.8 41 38-88 7-47 (47)
335 PF02153 PDH: Prephenate dehyd 71.3 9.4 0.0002 34.3 5.6 67 193-265 1-71 (258)
336 PF01047 MarR: MarR family; I 71.3 1.1 2.3E-05 30.1 -0.4 35 49-90 17-51 (59)
337 PF11599 AviRa: RRNA methyltra 71.0 35 0.00075 29.9 8.5 95 178-275 50-213 (246)
338 smart00418 HTH_ARSR helix_turn 70.7 1.7 3.7E-05 29.1 0.5 35 49-90 10-44 (66)
339 KOG2539 Mitochondrial/chloropl 70.5 5.4 0.00012 38.7 3.9 96 180-279 201-317 (491)
340 smart00529 HTH_DTXR Helix-turn 70.4 1.1 2.5E-05 33.3 -0.5 43 52-101 2-45 (96)
341 PF04445 SAM_MT: Putative SAM- 70.1 9.5 0.00021 33.8 5.1 74 168-244 63-161 (234)
342 PRK03573 transcriptional regul 69.7 1.4 3.1E-05 35.6 -0.1 46 49-101 46-98 (144)
343 TIGR02702 SufR_cyano iron-sulf 69.5 1.2 2.6E-05 38.5 -0.6 55 38-101 6-69 (203)
344 PF04967 HTH_10: HTH DNA bindi 69.3 2.8 6.1E-05 27.8 1.3 31 26-62 6-36 (53)
345 PRK11512 DNA-binding transcrip 68.8 1.5 3.1E-05 35.7 -0.2 55 38-101 45-106 (144)
346 KOG1227 Putative methyltransfe 67.1 2.7 5.8E-05 38.4 1.1 97 179-283 194-303 (351)
347 PF02636 Methyltransf_28: Puta 66.9 9.6 0.00021 34.1 4.7 33 180-212 19-59 (252)
348 PF01726 LexA_DNA_bind: LexA D 66.4 1.1 2.3E-05 31.2 -1.3 37 48-90 24-60 (65)
349 PF04182 B-block_TFIIIC: B-blo 66.2 1 2.2E-05 32.3 -1.5 50 34-91 4-53 (75)
350 PHA00738 putative HTH transcri 65.3 1.8 3.9E-05 33.2 -0.3 59 33-101 13-75 (108)
351 PF14394 DUF4423: Domain of un 65.2 1.6 3.4E-05 36.8 -0.7 44 51-101 41-87 (171)
352 smart00420 HTH_DEOR helix_turn 64.9 2.2 4.8E-05 27.4 0.1 36 49-91 14-49 (53)
353 TIGR01884 cas_HTH CRISPR locus 64.5 2.9 6.3E-05 36.1 0.8 56 34-99 145-203 (203)
354 PF01325 Fe_dep_repress: Iron 64.2 1.8 4E-05 29.5 -0.4 36 47-89 20-55 (60)
355 KOG1269 SAM-dependent methyltr 64.2 16 0.00034 34.7 5.7 99 180-284 181-320 (364)
356 PF02254 TrkA_N: TrkA-N domain 63.8 4.6 0.0001 31.0 1.8 80 188-275 4-95 (116)
357 smart00345 HTH_GNTR helix_turn 63.8 2.1 4.6E-05 28.4 -0.2 35 49-90 19-54 (60)
358 cd07377 WHTH_GntR Winged helix 63.6 2.8 6E-05 28.4 0.4 38 50-94 26-64 (66)
359 PF14740 DUF4471: Domain of un 63.6 14 0.0003 33.8 5.0 76 220-328 201-286 (289)
360 COG1321 TroR Mn-dependent tran 63.3 1.7 3.7E-05 35.9 -0.9 46 49-101 24-70 (154)
361 PF06557 DUF1122: Protein of u 63.2 29 0.00064 28.7 6.2 71 253-344 66-140 (170)
362 PRK11050 manganese transport r 62.8 2.4 5.3E-05 34.8 -0.0 55 38-101 42-97 (152)
363 PRK10870 transcriptional repre 62.4 2.2 4.8E-05 36.0 -0.3 57 38-101 60-123 (176)
364 cd00090 HTH_ARSR Arsenical Res 62.1 3.8 8.3E-05 28.2 0.9 50 38-97 12-65 (78)
365 cd07153 Fur_like Ferric uptake 61.4 2.9 6.3E-05 32.4 0.2 50 38-90 6-55 (116)
366 PRK15431 ferrous iron transpor 61.1 1.1 2.4E-05 32.2 -2.0 44 38-90 7-50 (78)
367 PF03686 UPF0146: Uncharacteri 61.1 15 0.00033 29.1 4.2 83 180-275 14-101 (127)
368 PF01638 HxlR: HxlR-like helix 60.9 1.9 4.1E-05 31.9 -0.9 46 49-101 18-71 (90)
369 PRK04172 pheS phenylalanyl-tRN 60.2 1.7 3.8E-05 43.0 -1.5 64 34-107 8-75 (489)
370 COG1063 Tdh Threonine dehydrog 60.1 48 0.001 31.2 8.3 90 181-282 170-274 (350)
371 COG3355 Predicted transcriptio 59.8 1.3 2.8E-05 35.1 -2.0 47 34-90 29-76 (126)
372 PF08220 HTH_DeoR: DeoR-like h 59.5 2 4.3E-05 28.9 -0.9 47 38-93 5-51 (57)
373 TIGR00122 birA_repr_reg BirA b 59.1 1.6 3.5E-05 30.4 -1.4 55 38-102 5-60 (69)
374 COG1255 Uncharacterized protei 58.8 86 0.0019 24.5 8.4 84 179-275 13-101 (129)
375 PTZ00326 phenylalanyl-tRNA syn 58.8 2.3 4.9E-05 41.9 -1.0 67 33-108 7-77 (494)
376 TIGR01889 Staph_reg_Sar staphy 58.4 2.5 5.4E-05 32.6 -0.7 46 49-101 43-95 (109)
377 PLN02853 Probable phenylalanyl 58.0 2.7 5.8E-05 41.2 -0.6 68 32-108 3-74 (492)
378 PF03486 HI0933_like: HI0933-l 57.1 6.1 0.00013 38.2 1.6 90 182-275 2-104 (409)
379 PRK13699 putative methylase; P 56.7 20 0.00043 31.6 4.7 21 252-275 51-71 (227)
380 PRK09424 pntA NAD(P) transhydr 55.4 74 0.0016 31.7 8.9 90 179-275 164-284 (509)
381 TIGR00498 lexA SOS regulatory 55.4 3 6.5E-05 35.8 -0.7 41 47-94 23-64 (199)
382 COG2345 Predicted transcriptio 55.2 5.3 0.00012 34.9 0.8 46 49-101 25-79 (218)
383 PRK06474 hypothetical protein; 55.0 3.3 7.1E-05 35.1 -0.5 66 27-101 6-81 (178)
384 COG4742 Predicted transcriptio 54.3 5.5 0.00012 35.8 0.7 60 32-102 13-72 (260)
385 PF07279 DUF1442: Protein of u 54.2 1.5E+02 0.0033 25.9 9.8 90 180-280 42-151 (218)
386 PF08461 HTH_12: Ribonuclease 53.9 0.85 1.9E-05 31.8 -3.6 59 38-99 3-62 (66)
387 KOG2352 Predicted spermine/spe 53.5 14 0.0003 36.2 3.3 121 148-275 267-415 (482)
388 PRK04214 rbn ribonuclease BN/u 53.5 4.9 0.00011 38.9 0.3 43 47-96 308-351 (412)
389 PF06962 rRNA_methylase: Putat 53.4 24 0.00053 28.6 4.3 66 205-275 1-91 (140)
390 smart00344 HTH_ASNC helix_turn 53.3 1.6 3.4E-05 33.4 -2.5 45 34-88 5-49 (108)
391 PRK14165 winged helix-turn-hel 52.7 5.6 0.00012 34.8 0.5 46 49-101 21-70 (217)
392 KOG0024 Sorbitol dehydrogenase 52.0 81 0.0018 29.5 7.8 93 177-281 167-277 (354)
393 COG5379 BtaA S-adenosylmethion 51.3 25 0.00055 32.2 4.4 53 220-275 308-365 (414)
394 PRK07502 cyclohexadienyl dehyd 50.9 68 0.0015 29.5 7.5 85 181-273 7-97 (307)
395 PRK11524 putative methyltransf 49.7 33 0.00071 31.3 5.1 20 253-275 60-79 (284)
396 PF01555 N6_N4_Mtase: DNA meth 49.5 24 0.00052 30.2 4.1 49 166-218 180-229 (231)
397 PF13545 HTH_Crp_2: Crp-like h 49.4 2.9 6.2E-05 29.5 -1.5 41 49-96 28-68 (76)
398 PF00325 Crp: Bacterial regula 48.9 2.5 5.4E-05 24.9 -1.5 31 49-86 2-32 (32)
399 PRK07417 arogenate dehydrogena 48.4 74 0.0016 28.8 7.3 75 183-265 3-83 (279)
400 COG4189 Predicted transcriptio 47.6 5.4 0.00012 35.0 -0.4 56 23-88 14-69 (308)
401 cd08237 ribitol-5-phosphate_DH 47.5 69 0.0015 29.8 7.1 88 178-278 162-257 (341)
402 COG0541 Ffh Signal recognition 47.5 58 0.0013 31.6 6.4 100 180-283 100-227 (451)
403 PRK06266 transcription initiat 47.5 4 8.8E-05 34.5 -1.1 45 34-88 24-68 (178)
404 PF06969 HemN_C: HemN C-termin 47.2 4.6 0.0001 27.7 -0.7 46 49-100 20-65 (66)
405 TIGR01202 bchC 2-desacetyl-2-h 45.9 1.1E+02 0.0023 28.0 8.0 85 180-278 145-232 (308)
406 PF00392 GntR: Bacterial regul 45.7 5.3 0.00011 27.3 -0.6 36 48-90 22-58 (64)
407 PRK08507 prephenate dehydrogen 45.4 75 0.0016 28.6 6.8 76 183-265 3-83 (275)
408 PF07101 DUF1363: Protein of u 45.1 9.1 0.0002 28.5 0.6 19 183-201 6-24 (124)
409 PRK11524 putative methyltransf 44.8 30 0.00066 31.5 4.1 53 166-222 197-251 (284)
410 COG0287 TyrA Prephenate dehydr 44.7 72 0.0016 29.1 6.5 79 182-265 5-90 (279)
411 KOG1098 Putative SAM-dependent 44.2 43 0.00094 33.9 5.1 45 170-214 35-80 (780)
412 COG2081 Predicted flavoprotein 43.6 23 0.0005 33.9 3.1 77 181-258 4-90 (408)
413 PHA02943 hypothetical protein; 43.5 6.8 0.00015 32.0 -0.3 43 38-90 16-58 (165)
414 COG5631 Predicted transcriptio 43.4 15 0.00032 30.3 1.6 49 47-101 96-148 (199)
415 PF05050 Methyltransf_21: Meth 43.3 31 0.00068 27.8 3.7 31 185-215 1-36 (167)
416 KOG2920 Predicted methyltransf 43.3 19 0.00041 32.7 2.4 37 179-216 116-153 (282)
417 PF12324 HTH_15: Helix-turn-he 42.4 4 8.7E-05 29.3 -1.6 34 38-80 29-62 (77)
418 PF07789 DUF1627: Protein of u 42.2 13 0.00028 30.2 1.1 41 49-96 6-50 (155)
419 PF07109 Mg-por_mtran_C: Magne 42.1 92 0.002 23.5 5.5 84 243-342 4-96 (97)
420 PHA01634 hypothetical protein 42.1 18 0.0004 28.8 1.9 37 180-217 29-66 (156)
421 TIGR00373 conserved hypothetic 41.6 5.4 0.00012 33.1 -1.2 43 38-89 19-61 (158)
422 TIGR02822 adh_fam_2 zinc-bindi 41.3 1.6E+02 0.0035 27.1 8.5 88 177-278 163-255 (329)
423 PRK03659 glutathione-regulated 40.5 55 0.0012 33.4 5.6 84 182-275 402-497 (601)
424 KOG2666 UDP-glucose/GDP-mannos 40.2 26 0.00057 32.4 2.8 30 182-211 3-34 (481)
425 TIGR00675 dcm DNA-methyltransf 39.6 75 0.0016 29.4 5.9 116 183-327 1-136 (315)
426 PF06406 StbA: StbA protein; 39.5 87 0.0019 29.0 6.3 65 151-215 244-310 (318)
427 COG1378 Predicted transcriptio 38.3 14 0.0003 33.1 0.8 45 49-100 30-77 (247)
428 PF10017 Methyltransf_33: Hist 37.6 54 0.0012 25.9 4.0 28 307-334 93-120 (127)
429 PF08279 HTH_11: HTH domain; 37.3 2.9 6.2E-05 27.6 -2.9 30 48-84 14-43 (55)
430 PF13384 HTH_23: Homeodomain-l 36.8 14 0.00029 23.6 0.3 30 49-85 17-46 (50)
431 PF03444 HrcA_DNA-bdg: Winged 35.7 9.3 0.0002 27.5 -0.6 46 47-99 21-69 (78)
432 PF13730 HTH_36: Helix-turn-he 35.6 7.5 0.00016 25.5 -1.1 30 50-86 26-55 (55)
433 PRK15001 SAM-dependent 23S rib 35.4 3E+02 0.0064 26.4 9.3 88 182-279 47-144 (378)
434 PF10007 DUF2250: Uncharacteri 35.1 4.6 9.9E-05 30.2 -2.4 45 38-91 12-56 (92)
435 KOG1209 1-Acyl dihydroxyaceton 34.9 3.2E+02 0.007 24.1 8.7 74 179-275 6-85 (289)
436 COG4353 Uncharacterized conser 34.7 1E+02 0.0022 25.5 5.0 60 253-333 73-132 (192)
437 cd05290 LDH_3 A subgroup of L- 34.3 1.5E+02 0.0033 27.4 7.0 92 183-275 2-118 (307)
438 COG0686 Ald Alanine dehydrogen 33.9 1.4E+02 0.003 27.9 6.3 88 180-273 168-265 (371)
439 TIGR03879 near_KaiC_dom probab 33.9 18 0.00039 25.7 0.6 31 49-86 32-62 (73)
440 TIGR00561 pntA NAD(P) transhyd 33.6 1.1E+02 0.0024 30.6 6.2 89 180-274 164-282 (511)
441 PRK00066 ldh L-lactate dehydro 33.6 1.6E+02 0.0034 27.3 7.0 96 179-275 5-121 (315)
442 PRK10669 putative cation:proto 33.6 93 0.002 31.4 5.9 79 188-275 423-514 (558)
443 PF12242 Eno-Rase_NADH_b: NAD( 33.6 1E+02 0.0022 22.2 4.3 34 177-210 36-71 (78)
444 PRK03562 glutathione-regulated 33.3 72 0.0016 32.7 5.1 86 181-275 401-497 (621)
445 TIGR02147 Fsuc_second hypothet 33.0 11 0.00024 34.2 -0.7 46 51-101 139-185 (271)
446 PRK11534 DNA-binding transcrip 32.6 18 0.00039 31.5 0.5 47 47-100 28-75 (224)
447 KOG2198 tRNA cytosine-5-methyl 32.5 1.3E+02 0.0028 28.6 6.1 35 177-211 153-191 (375)
448 cd02190 epsilon_tubulin The tu 32.4 73 0.0016 30.5 4.7 41 167-207 89-134 (379)
449 COG0604 Qor NADPH:quinone redu 31.9 2.1E+02 0.0045 26.6 7.6 91 177-280 140-244 (326)
450 PRK11179 DNA-binding transcrip 31.9 6.5 0.00014 32.2 -2.2 47 33-89 10-56 (153)
451 PRK11169 leucine-responsive tr 31.8 8.3 0.00018 32.0 -1.6 48 31-88 13-60 (164)
452 TIGR01771 L-LDH-NAD L-lactate 31.8 1.1E+02 0.0024 28.1 5.6 89 186-275 2-112 (299)
453 PF08820 DUF1803: Domain of un 31.5 17 0.00036 27.2 0.2 40 49-96 28-67 (93)
454 COG4565 CitB Response regulato 31.5 11 0.00025 32.6 -0.8 44 38-89 163-206 (224)
455 PF08845 SymE_toxin: Toxin Sym 31.4 34 0.00073 23.1 1.6 14 316-329 30-43 (57)
456 PF12793 SgrR_N: Sugar transpo 31.3 12 0.00026 29.2 -0.7 36 48-90 18-53 (115)
457 cd00401 AdoHcyase S-adenosyl-L 31.3 2.5E+02 0.0054 27.2 8.1 95 167-275 189-288 (413)
458 COG1846 MarR Transcriptional r 31.2 14 0.0003 28.2 -0.4 60 32-101 22-88 (126)
459 PF14314 Methyltrans_Mon: Viru 31.1 83 0.0018 32.4 5.0 47 159-207 304-350 (675)
460 TIGR03329 Phn_aa_oxid putative 31.0 54 0.0012 32.1 3.7 33 181-213 25-59 (460)
461 COG1733 Predicted transcriptio 31.0 17 0.00037 28.6 0.1 46 49-101 36-89 (120)
462 cd08254 hydroxyacyl_CoA_DH 6-h 30.7 4.1E+02 0.0088 24.0 10.6 87 177-275 163-262 (338)
463 PF01210 NAD_Gly3P_dh_N: NAD-d 30.2 1E+02 0.0022 25.1 4.7 85 183-275 2-102 (157)
464 PRK12423 LexA repressor; Provi 30.1 9.6 0.00021 32.9 -1.6 39 47-91 23-61 (202)
465 TIGR02787 codY_Gpos GTP-sensin 29.4 11 0.00024 33.4 -1.3 46 37-90 187-232 (251)
466 PF02796 HTH_7: Helix-turn-hel 29.0 25 0.00054 22.1 0.6 23 49-78 21-43 (45)
467 PRK08818 prephenate dehydrogen 28.9 2.1E+02 0.0045 27.3 7.1 70 181-265 5-80 (370)
468 PRK13777 transcriptional regul 28.9 15 0.00034 31.2 -0.5 55 38-101 50-111 (185)
469 cd05188 MDR Medium chain reduc 28.5 3.3E+02 0.007 23.5 8.1 86 178-275 133-231 (271)
470 PRK13917 plasmid segregation p 28.4 2.1E+02 0.0045 26.9 7.0 58 155-214 267-324 (344)
471 PF08784 RPA_C: Replication pr 28.3 11 0.00023 28.5 -1.4 42 38-86 52-95 (102)
472 PRK04176 ribulose-1,5-biphosph 28.2 1.3E+02 0.0029 26.8 5.5 31 181-211 26-56 (257)
473 PF09106 SelB-wing_2: Elongati 28.2 15 0.00033 24.7 -0.5 39 49-94 17-58 (59)
474 PRK13699 putative methylase; P 28.2 1.2E+02 0.0026 26.6 5.1 49 167-219 153-202 (227)
475 PRK10046 dpiA two-component re 28.1 15 0.00033 31.9 -0.7 45 38-90 167-211 (225)
476 PRK09273 hypothetical protein; 28.0 47 0.001 28.9 2.3 35 181-216 64-99 (211)
477 TIGR03338 phnR_burk phosphonat 28.0 21 0.00046 30.7 0.2 47 47-100 32-79 (212)
478 PRK09489 rsmC 16S ribosomal RN 27.8 3.3E+02 0.0072 25.6 8.2 95 169-275 10-111 (342)
479 PF06163 DUF977: Bacterial pro 27.4 8.2 0.00018 30.4 -2.2 50 31-90 11-60 (127)
480 PF05331 DUF742: Protein of un 27.4 26 0.00056 27.3 0.6 36 49-91 55-90 (114)
481 PF03721 UDPG_MGDP_dh_N: UDP-g 27.4 1.1E+02 0.0024 25.9 4.5 95 183-282 3-124 (185)
482 PRK11753 DNA-binding transcrip 27.1 21 0.00045 30.5 -0.0 39 49-94 168-206 (211)
483 PRK05225 ketol-acid reductoiso 27.1 68 0.0015 31.5 3.4 88 180-275 36-130 (487)
484 PRK09334 30S ribosomal protein 26.9 18 0.00038 26.7 -0.4 35 48-89 40-74 (86)
485 PF05491 RuvB_C: Holliday junc 26.8 23 0.00051 25.3 0.2 35 48-89 24-59 (76)
486 COG1802 GntR Transcriptional r 26.8 24 0.00053 30.9 0.4 48 47-101 37-85 (230)
487 KOG1596 Fibrillarin and relate 26.5 3.5E+02 0.0077 24.3 7.4 100 168-275 143-260 (317)
488 cd02188 gamma_tubulin Gamma-tu 26.1 97 0.0021 30.2 4.4 39 168-206 121-164 (431)
489 TIGR00872 gnd_rel 6-phosphoglu 26.1 4.1E+02 0.009 24.1 8.4 81 183-275 3-91 (298)
490 PF08221 HTH_9: RNA polymerase 25.6 7.5 0.00016 26.6 -2.5 43 38-89 18-60 (62)
491 PTZ00117 malate dehydrogenase; 25.6 4.8E+02 0.01 24.1 8.8 32 181-212 6-38 (319)
492 PF02002 TFIIE_alpha: TFIIE al 25.4 4.9 0.00011 30.7 -3.8 43 38-89 18-60 (105)
493 PLN02688 pyrroline-5-carboxyla 25.4 2E+02 0.0044 25.5 6.1 83 183-275 3-93 (266)
494 PRK13239 alkylmercury lyase; P 24.9 19 0.00042 31.2 -0.6 37 38-83 27-63 (206)
495 COG3413 Predicted DNA binding 24.8 39 0.00084 29.4 1.3 33 25-63 160-192 (215)
496 TIGR03739 PRTRC_D PRTRC system 24.7 2.9E+02 0.0063 25.5 7.2 48 167-214 261-308 (320)
497 COG0031 CysK Cysteine synthase 24.6 1.9E+02 0.0042 26.6 5.8 43 166-211 158-204 (300)
498 cd08230 glucose_DH Glucose deh 24.4 5.7E+02 0.012 23.6 10.6 86 179-279 172-271 (355)
499 PRK13243 glyoxylate reductase; 24.3 1.2E+02 0.0027 28.3 4.6 80 180-265 150-232 (333)
500 PRK11161 fumarate/nitrate redu 24.2 21 0.00046 31.1 -0.5 42 49-97 184-225 (235)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=4.4e-47 Score=342.02 Aligned_cols=315 Identities=34% Similarity=0.478 Sum_probs=278.2
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE---eee
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV---MYN 94 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~---~y~ 94 (345)
+++.+|..+|++++|++|+ +||.| ..+++ ..|||..+.. +.++..|..++|+||.|++.+++++... .|+
T Consensus 12 ~l~~~~~~~~~lk~A~eL~-v~d~l-~~~~~---p~~ia~~l~~--~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~~~Y~ 84 (342)
T KOG3178|consen 12 RLANGFALPMVLKAACELG-VFDIL-ANAGS---PSEIASLLPT--PKNPEAPVLLDRILRLLVSYSILKCRLVGGEVYS 84 (342)
T ss_pred HHHhhhhhHHHHHHHHHcC-hHHHH-HhCCC---HHHHHHhccC--CCCCCChhHHHHHHHHHHHhhhceeeeecceeee
Confidence 5788999999999999999 99999 55432 7788888775 4466789999999999999999988754 599
Q ss_pred cCCCccc-cccchhhhhhhhhccccchhhhhchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHH
Q 044482 95 LFPGAKE-RTMEEFNALAIGAGFGTIKVICRAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIV 166 (345)
Q Consensus 95 ~t~~s~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~ 166 (345)
++|+++. +..++..|+..++...+++..++.|..+ +++ |..++|..+++|...++.....|+++|...+...
T Consensus 85 ~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~ 164 (342)
T KOG3178|consen 85 ATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLV 164 (342)
T ss_pred ccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHH
Confidence 9999998 5444345899999888888899999998 333 6777888899999999988899999999999999
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----CceEEeccCCcCCCCCCEEEecc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----CVEHVEGDMFVNVPSGQAIFTKS 242 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----ri~~~~gd~~~~~p~~D~i~~~~ 242 (345)
.+.+++.+.+|+.....||+|||.|..+..++.+||+++++.+|+|.+++.++ .|+.+.||+|.+.|++|+||++|
T Consensus 165 ~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkW 244 (342)
T KOG3178|consen 165 MKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKW 244 (342)
T ss_pred HHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEe
Confidence 88999999889999999999999999999999999999999999999999988 48999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC-CCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE-SPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
|||||+|++|+++|++|+++|+| +|+|+|. |.+.++ ...+.........+|+.|+.++.+|++|+..||+.++.+
T Consensus 245 iLhdwtDedcvkiLknC~~sL~~---~GkIiv~-E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~ 320 (342)
T KOG3178|consen 245 ILHDWTDEDCVKILKNCKKSLPP---GGKIIVV-ENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPE 320 (342)
T ss_pred ecccCChHHHHHHHHHHHHhCCC---CCEEEEE-eccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchh
Confidence 99999999999999999999999 9999999 999986 333222234557789999999867999999999999999
Q ss_pred CCCCceEEEecCCceEEEEEEc
Q 044482 322 AGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 322 aGf~~~~~~~~~~~~~vi~~~k 343 (345)
+||.+.++...+...++|+++|
T Consensus 321 ~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 321 EGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred hcCceeEEEeccCccchheeCC
Confidence 9999999999998999999886
No 2
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=3e-42 Score=308.66 Aligned_cols=226 Identities=28% Similarity=0.359 Sum_probs=194.4
Q ss_pred EeEeeecCCCccc-cccchhhhhhhhhccccchhhhhchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHHHH
Q 044482 89 DVVMYNLFPGAKE-RTMEEFNALAIGAGFGTIKVICRAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQ 160 (345)
Q Consensus 89 ~~~~y~~t~~s~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 160 (345)
++++|+||++|+. +.++++.+++.++.++..+..+.+|.+| +++ |+..+|.++|+|++++|+..+.|+.+|.
T Consensus 2 ~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 2 EGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp STEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 3569999999999 5555546788888776667889999998 333 8888898999999999999999999999
Q ss_pred HhhHHHH-HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---CceEEeccCCcCCCCCC
Q 044482 161 NHTAIVM-KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---CVEHVEGDMFVNVPSGQ 236 (345)
Q Consensus 161 ~~~~~~~-~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---ri~~~~gd~~~~~p~~D 236 (345)
..+.... ..+.+.++ |++..+|||||||+|.++.+++++||+++++++|+|+|++.++ ||++++||||+++|.+|
T Consensus 82 ~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D 160 (241)
T PF00891_consen 82 EYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVAD 160 (241)
T ss_dssp HHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSES
T ss_pred hhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcccc
Confidence 9888777 77888888 9999999999999999999999999999999999999998776 99999999999888899
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCC--cEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKH--GRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~g--G~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
+|++++|||+|+|++|.+||++++++|+| | |+|+|+ |.++++....+........+|+.|++++ +|++||.+|
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~-e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e 235 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLII-EMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEE 235 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEE-EEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHH
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEE-eeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHH
Confidence 99999999999999999999999999999 8 999999 9999988766543322357899999998 899999999
Q ss_pred HHHHHH
Q 044482 315 FKALAM 320 (345)
Q Consensus 315 ~~~ll~ 320 (345)
|++||+
T Consensus 236 ~~~ll~ 241 (241)
T PF00891_consen 236 WEALLK 241 (241)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999985
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=3e-39 Score=298.98 Aligned_cols=282 Identities=13% Similarity=0.162 Sum_probs=206.0
Q ss_pred HHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCccc-cc
Q 044482 25 QSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKE-RT 103 (345)
Q Consensus 25 ~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~-l~ 103 (345)
..++|++|++|| |||+| .+| |.|++|||+++++ +++.++|+||+|+++|+|++++++|+||+.++. +.
T Consensus 3 ~~~~l~aa~~Lg-lfd~L-~~g--p~t~~eLA~~~~~-------~~~~~~~lL~~L~~lgll~~~~~~y~~t~~~~~~l~ 71 (306)
T TIGR02716 3 EFSCMKAAIELD-LFSHM-AEG--PKDLATLAADTGS-------VPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMFS 71 (306)
T ss_pred hHHHHHHHHHcC-cHHHH-hcC--CCCHHHHHHHcCC-------ChHHHHHHHHHHHhCCCeEecCCcEecchhHHhhcc
Confidence 467999999999 99999 553 7899999999999 899999999999999999998889999999988 65
Q ss_pred cchhh---hhhhhhccccchhhhhchHHHHHHHhHhcCcchhh----hhccCchhHHHHHHHHHH-hhHHHHHHHHHhcc
Q 044482 104 MEEFN---ALAIGAGFGTIKVICRAYCYWVIEFYKTMHIMDCI----YLTMLPMMLNLFNQSMQN-HTAIVMKKILEIYK 175 (345)
Q Consensus 104 ~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~----~~~~~~~~~~~f~~~m~~-~~~~~~~~i~~~~~ 175 (345)
++++. ++.+++.+.. ......|..+....+ |.+-|+ +....++. ..|...|.. ......+.+++.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~r---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 146 (306)
T TIGR02716 72 PTPKEPNLHQTPVAKAMA-FLADDFYMGLSQAVR---GQKNFKGQVPYPPVTRED-NLYFEEIHRSNAKFAIQLLLEEAK 146 (306)
T ss_pred CCccchhhhcCchHHHHH-HHHHHHHHhHHHHhc---CCcccccccCCCCCCHHH-HHhHHHHHHhcchhHHHHHHHHcC
Confidence 54432 1223333221 112244666522121 222222 22222222 234455543 33344566778877
Q ss_pred CcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCCCEEEecccc
Q 044482 176 GFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSGQAIFTKSVL 244 (345)
Q Consensus 176 ~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~D~i~~~~vl 244 (345)
+++..+|||||||+|.++..+++++|+++++++|+|++++.++ |++++.+|+++ ++|.+|+|++++++
T Consensus 147 -~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~l 225 (306)
T TIGR02716 147 -LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRIL 225 (306)
T ss_pred -CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhh
Confidence 8888999999999999999999999999999999999987654 79999999997 66667999999999
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhh-hccchhhhhhcCCCccCCHHHHHHHHHHCC
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNI-LTLDIVMYDLFPQAKGRTAGEFKALAMAAG 323 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~rt~~e~~~ll~~aG 323 (345)
|+|+++.+.++|++++++|+| ||+++|. |.+.+++..+. ..... ......|+.. -...++.++|.++|+++|
T Consensus 226 h~~~~~~~~~il~~~~~~L~p---gG~l~i~-d~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~e~~~ll~~aG 298 (306)
T TIGR02716 226 YSANEQLSTIMCKKAFDAMRS---GGRLLIL-DMVIDDPENPN-FDYLSHYILGAGMPFS--VLGFKEQARYKEILESLG 298 (306)
T ss_pred hcCChHHHHHHHHHHHHhcCC---CCEEEEE-EeccCCCCCch-hhHHHHHHHHcccccc--cccCCCHHHHHHHHHHcC
Confidence 999999999999999999999 9999999 98877654221 11111 1111111111 112345799999999999
Q ss_pred CCceEEE
Q 044482 324 FGTIKVI 330 (345)
Q Consensus 324 f~~~~~~ 330 (345)
|+.+++.
T Consensus 299 f~~v~~~ 305 (306)
T TIGR02716 299 YKDVTMV 305 (306)
T ss_pred CCeeEec
Confidence 9988753
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.79 E-value=3.9e-18 Score=149.61 Aligned_cols=164 Identities=22% Similarity=0.259 Sum_probs=123.9
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC--C
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG--Q 236 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~--D 236 (345)
+.+... ...+.+|||||||||.++..+++..+..+++++|. +.|++.++ .++|+.+|+.+ |+|+. |
T Consensus 43 ~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD 121 (238)
T COG2226 43 LISLLG-IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFD 121 (238)
T ss_pred HHHhhC-CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccC
Confidence 344433 33578999999999999999999999999999999 89999887 38899999999 99965 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchh-hhhhc----C------
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIV-MYDLF----P------ 305 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~-~~~~~----~------ 305 (345)
+|.+++.||+++|.+ +.|++++|+||| ||++++. |...++.+.... ....+... .+... .
T Consensus 122 ~vt~~fglrnv~d~~--~aL~E~~RVlKp---gG~~~vl-e~~~p~~~~~~~---~~~~~~~~~v~P~~g~~~~~~~~~y 192 (238)
T COG2226 122 AVTISFGLRNVTDID--KALKEMYRVLKP---GGRLLVL-EFSKPDNPVLRK---AYILYYFKYVLPLIGKLVAKDAEAY 192 (238)
T ss_pred EEEeeehhhcCCCHH--HHHHHHHHhhcC---CeEEEEE-EcCCCCchhhHH---HHHHHHHHhHhhhhceeeecChHHH
Confidence 999999999999885 789999999999 9999999 988776543211 11111111 11111 0
Q ss_pred ------CCccCCHHHHHHHHHHCCCCceEEEecCC-ceEEEEEEc
Q 044482 306 ------QAKGRTAGEFKALAMAAGFGTIKVICRSY-CYWVIEFYK 343 (345)
Q Consensus 306 ------~~~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~k 343 (345)
.-...+.+++.++++++||+.++...... ...+..+.|
T Consensus 193 ~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 193 EYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 11345889999999999999988666653 345555554
No 5
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.76 E-value=1.2e-18 Score=155.65 Aligned_cols=156 Identities=15% Similarity=0.178 Sum_probs=117.1
Q ss_pred ccccceEEecCCccHHHHHHHHH--CCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCCCEEEeccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNT--YPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSGQAIFTKSV 243 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~--~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~D~i~~~~v 243 (345)
.+..+|||||||+|.++..++++ +|+.+++++|+ +.|++.|+ +++++.+|+.+ ++++.|++++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 35578999999999999999997 47899999999 88887765 57999999987 6666699999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhh-----------------hhhcCC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVM-----------------YDLFPQ 306 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~-----------------~~~~~~ 306 (345)
+|++++++...+|++++++|+| ||.+++. |.+.+++..... ....+.+ .....-
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~-d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 202 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLS-EKFRFEDTKINH-----LLIDLHHQFKRANGYSELEISQKRTALENV 202 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEe-ecccCCCHhHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhcc
Confidence 9999988889999999999999 9999999 887655432111 0111110 000001
Q ss_pred CccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEE
Q 044482 307 AKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFY 342 (345)
Q Consensus 307 ~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 342 (345)
-...|.+++++++++|||+.+++........++.++
T Consensus 203 ~~~~s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 203 MRTDSIETHKARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred CCCCCHHHHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 235799999999999999987764444444444443
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.75 E-value=6.1e-17 Score=146.33 Aligned_cols=157 Identities=21% Similarity=0.168 Sum_probs=115.3
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC------------CceEEeccCCc-CCCCC--CEEE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP------------CVEHVEGDMFV-NVPSG--QAIF 239 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~-~~p~~--D~i~ 239 (345)
..+..+|||||||+|.++..+++++ |+.+++++|+ ++|++.|+ +++++.+|+.+ +++++ |+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4566799999999999999999885 6789999999 88887653 57899999987 77754 9999
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhh---hhcCC----------
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMY---DLFPQ---------- 306 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~---------- 306 (345)
+..++|++++. .++|++++++||| ||++++. |...++....... ....++..+. .....
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkp---GG~l~i~-d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~s 222 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKP---GSRVSIL-DFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKSS 222 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCc---CcEEEEE-ECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHHH
Confidence 99999999876 4789999999999 9999999 8876543211100 0011111000 00000
Q ss_pred -CccCCHHHHHHHHHHCCCCceEEEecCCc-eEEEEE
Q 044482 307 -AKGRTAGEFKALAMAAGFGTIKVICRSYC-YWVIEF 341 (345)
Q Consensus 307 -~~~rt~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~ 341 (345)
....+.+++.++++++||++++.....+. ..+..+
T Consensus 223 ~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 259 (261)
T PLN02233 223 INEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVA 259 (261)
T ss_pred HHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEE
Confidence 23468999999999999999988877644 344444
No 7
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.74 E-value=2.4e-18 Score=152.28 Aligned_cols=165 Identities=19% Similarity=0.235 Sum_probs=82.5
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC--
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG-- 235 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~-- 235 (345)
+++... .....+|||||||+|.++..++++. |+.+++++|+ +.|++.|+ +|+++.+|+.+ |+|++
T Consensus 39 ~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sf 117 (233)
T PF01209_consen 39 LIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSF 117 (233)
T ss_dssp HHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-E
T ss_pred HHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCce
Confidence 344433 4566799999999999999999875 6789999999 89998876 79999999998 88865
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchh----hhhhcCC-----
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIV----MYDLFPQ----- 306 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~----- 306 (345)
|+|++++.||+++|.+ +.|++++|+||| ||+++|+ |...+..+. ....+...+... ......+
T Consensus 118 D~v~~~fglrn~~d~~--~~l~E~~RVLkP---GG~l~il-e~~~p~~~~--~~~~~~~y~~~ilP~~g~l~~~~~~~Y~ 189 (233)
T PF01209_consen 118 DAVTCSFGLRNFPDRE--RALREMYRVLKP---GGRLVIL-EFSKPRNPL--LRALYKFYFKYILPLIGRLLSGDREAYR 189 (233)
T ss_dssp EEEEEES-GGG-SSHH--HHHHHHHHHEEE---EEEEEEE-EEEB-SSHH--HHHHHHH---------------------
T ss_pred eEEEHHhhHHhhCCHH--HHHHHHHHHcCC---CeEEEEe-eccCCCCch--hhceeeeeeccccccccccccccccccc
Confidence 9999999999999874 689999999999 9999999 987765421 100010111100 0001100
Q ss_pred ------CccCCHHHHHHHHHHCCCCceEEEecCCc-eEEEEEEc
Q 044482 307 ------AKGRTAGEFKALAMAAGFGTIKVICRSYC-YWVIEFYK 343 (345)
Q Consensus 307 ------~~~rt~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~k 343 (345)
....+.+++.++++++||+.++.++..++ .++..++|
T Consensus 190 yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 190 YLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp --------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccCC
Confidence 02347889999999999999988777643 45555544
No 8
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.74 E-value=7.4e-18 Score=151.26 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=115.3
Q ss_pred ccccceEEecCCccHHHHHHHH--HCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCCCEEEeccc
Q 044482 178 KELKKLVDVASCLGANMSLIVN--TYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSGQAIFTKSV 243 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~--~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~D~i~~~~v 243 (345)
.+..+|||||||+|..+..+++ .+|+.+++++|. |.|++.|+ +++++.+|+.+ +.++.|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 3557899999999999999988 468999999999 89988775 68999999987 5555699999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccc------hhh------hhhcCC-CccC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLD------IVM------YDLFPQ-AKGR 310 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d------~~~------~~~~~~-~~~r 310 (345)
+|++++++...++++++++|+| ||.+++. |.+..++...... ......+ ... .....+ -...
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~-e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~ 209 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNP---GGALVLS-EKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTD 209 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCC---CCEEEEE-EecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccC
Confidence 9999988888999999999999 9999999 8776554322110 0000000 000 000001 1235
Q ss_pred CHHHHHHHHHHCCCCceEEEecCCceEEEEEEc
Q 044482 311 TAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 311 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 343 (345)
|.++..+||++|||+.+...........+.++|
T Consensus 210 ~~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 242 (247)
T PRK15451 210 SVETHKARLHKAGFEHSELWFQCFNFGSLVALK 242 (247)
T ss_pred CHHHHHHHHHHcCchhHHHHHHHHhHHHHhhee
Confidence 899999999999999876543333333333333
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.72 E-value=1.3e-16 Score=144.35 Aligned_cols=153 Identities=18% Similarity=0.245 Sum_probs=118.4
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC--
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG-- 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~-- 235 (345)
...+++.++ ..+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.++ +++++.+|+.+ ++|++
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 446777776 7778899999999999999998876 679999999 77777655 68999999987 77754
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|+|++..+++|++.++..++|++++++|+| ||++++. |........... .... .+... .....+.++|
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~-d~~~~~~~~~~~-----~~~~--~~~~~-~~~~~~~~~~ 186 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLIT-DYCADKIENWDE-----EFKA--YIKKR-KYTLIPIQEY 186 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEE-EeccccccCcHH-----HHHH--HHHhc-CCCCCCHHHH
Confidence 999999999999877778999999999999 9999999 886654321110 0000 11111 2234588999
Q ss_pred HHHHHHCCCCceEEEecC
Q 044482 316 KALAMAAGFGTIKVICRS 333 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~~ 333 (345)
.++|+++||++++.....
T Consensus 187 ~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 187 GDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHHHCCCCeeeEEeCc
Confidence 999999999999887764
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.72 E-value=1.8e-16 Score=140.87 Aligned_cols=166 Identities=15% Similarity=0.148 Sum_probs=121.8
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~ 235 (345)
..+++.++ .....+|||+|||+|.++..+++.. |+.+++++|+ |.+++.++ +++++.+|+.+ +++++
T Consensus 35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 34556666 6667899999999999999999986 6789999999 78876654 68899999987 66643
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhh-------------
Q 044482 236 --QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVM------------- 300 (345)
Q Consensus 236 --D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~------------- 300 (345)
|+|++..++|++++. .++|+++++.|+| ||++++. +...+.... ........+...+
T Consensus 114 ~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~---gG~l~~~-~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~ 185 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDY--MQVLREMYRVVKP---GGKVVCL-ETSQPTIPG--FKQLYFFYFKYIMPLFGKLFAKSYKE 185 (231)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHHcCc---CeEEEEE-ECCCCCChH--HHHHHHHHHcChhHHhhHHhcCCHHH
Confidence 999999999998876 4789999999999 9999999 765433210 0000000000000
Q ss_pred ---hhhcCCCccCCHHHHHHHHHHCCCCceEEEecC-CceEEEEEEc
Q 044482 301 ---YDLFPQAKGRTAGEFKALAMAAGFGTIKVICRS-YCYWVIEFYK 343 (345)
Q Consensus 301 ---~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 343 (345)
+.-. .....+.++++++|+++||+++++.... +..+++.++|
T Consensus 186 ~~~~~~~-~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 186 YSWLQES-TRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0000 1123578999999999999999998887 5677888876
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.70 E-value=3.9e-16 Score=140.84 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=111.1
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCcCCCC-C-CEEEec
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFVNVPS-G-QAIFTK 241 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~~~p~-~-D~i~~~ 241 (345)
...+++.++ .....+|||||||+|.++..+++++|+.+++++|+ |.+++.++ +++++.+|+.+..+. . |+|+++
T Consensus 18 ~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 18 FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEe
Confidence 346777777 66778999999999999999999999999999999 88998887 799999998763333 3 999999
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhh----hhhcCCCccCCHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVM----YDLFPQAKGRTAGEFKA 317 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~rt~~e~~~ 317 (345)
.++|++++. .++|++++++|+| ||++++. .....+.+...........-.+.. .....+....+.+++.+
T Consensus 97 ~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 170 (255)
T PRK14103 97 AALQWVPEH--ADLLVRWVDELAP---GSWIAVQ-VPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAE 170 (255)
T ss_pred hhhhhCCCH--HHHHHHHHHhCCC---CcEEEEE-cCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHH
Confidence 999999876 5789999999999 9999887 432111100000000000000000 00110223468999999
Q ss_pred HHHHCCCCceEE
Q 044482 318 LAMAAGFGTIKV 329 (345)
Q Consensus 318 ll~~aGf~~~~~ 329 (345)
+|+++||++...
T Consensus 171 ~l~~aGf~v~~~ 182 (255)
T PRK14103 171 LLTDAGCKVDAW 182 (255)
T ss_pred HHHhCCCeEEEE
Confidence 999999985433
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.69 E-value=9.6e-16 Score=143.69 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=108.4
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCC--CEEEeccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG--QAIFTKSV 243 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~--D~i~~~~v 243 (345)
....+|||||||+|.++..+++++ +.+++++|+ +.+++.++ +++++.+|+.+ +++++ |+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456789999999999999999988 679999999 77776543 68999999988 77754 99999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCC--chhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEF--SSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
+||++|. .++|++++++|+| ||+++|. +......... .........++....... -....+.++|.+++++
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkp---GG~lvi~-~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~ 268 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAP---GGRIIIV-TWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAES 268 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCC---CcEEEEE-EecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHH
Confidence 9999886 4889999999999 9999998 7654322111 000000111111111111 1123579999999999
Q ss_pred CCCCceEEEecC
Q 044482 322 AGFGTIKVICRS 333 (345)
Q Consensus 322 aGf~~~~~~~~~ 333 (345)
+||+++++....
T Consensus 269 aGf~~v~~~d~s 280 (340)
T PLN02244 269 LGLQDIKTEDWS 280 (340)
T ss_pred CCCCeeEeeeCc
Confidence 999999887653
No 13
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.67 E-value=9.1e-16 Score=142.23 Aligned_cols=144 Identities=22% Similarity=0.217 Sum_probs=111.1
Q ss_pred HHHhccCcc-cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCc-CCCCC--CEE
Q 044482 170 ILEIYKGFK-ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFV-NVPSG--QAI 238 (345)
Q Consensus 170 i~~~~~~~~-~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~-~~p~~--D~i 238 (345)
+++... +. ...+|||||||+|.++..+++.+|..+++++|. +++++.++ +++++.+|+.+ +++.+ |+|
T Consensus 104 ~l~~~~-l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvV 182 (340)
T PLN02490 104 ALEPAD-LSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRY 182 (340)
T ss_pred HHhhcc-cCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEE
Confidence 344444 43 356899999999999999999998889999999 78877665 68899999987 66643 999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHH
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKAL 318 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~l 318 (345)
++..++|+|++.+ ++|+++++.|+| ||++++. +.+.++.. .. ....+..+ ...+.+|+.++
T Consensus 183 Is~~~L~~~~d~~--~~L~e~~rvLkP---GG~LvIi-~~~~p~~~----~~--r~~~~~~~-------~~~t~eEl~~l 243 (340)
T PLN02490 183 VSAGSIEYWPDPQ--RGIKEAYRVLKI---GGKACLI-GPVHPTFW----LS--RFFADVWM-------LFPKEEEYIEW 243 (340)
T ss_pred EEcChhhhCCCHH--HHHHHHHHhcCC---CcEEEEE-EecCcchh----HH--HHhhhhhc-------cCCCHHHHHHH
Confidence 9999999999875 689999999999 9999998 65543210 00 01112111 12578999999
Q ss_pred HHHCCCCceEEEecC
Q 044482 319 AMAAGFGTIKVICRS 333 (345)
Q Consensus 319 l~~aGf~~~~~~~~~ 333 (345)
|+++||+.+++....
T Consensus 244 L~~aGF~~V~i~~i~ 258 (340)
T PLN02490 244 FTKAGFKDVKLKRIG 258 (340)
T ss_pred HHHCCCeEEEEEEcC
Confidence 999999999987764
No 14
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.66 E-value=3.1e-15 Score=129.23 Aligned_cols=165 Identities=20% Similarity=0.188 Sum_probs=119.9
Q ss_pred HHHHHHHHHhhHHHHHH-HHHhccCcccccceEEecCCccHHHHHHHHHCCC------CeEEEeeh-hhHhhhCC-----
Q 044482 153 NLFNQSMQNHTAIVMKK-ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ------ITGINFDL-PYVIKNAP----- 219 (345)
Q Consensus 153 ~~f~~~m~~~~~~~~~~-i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~------~~~~~~Dl-p~~i~~a~----- 219 (345)
+..+.+|........+. .+..+. -...-++||++||+|..+..++++-+. .+++++|+ |+|+..++
T Consensus 74 D~mND~mSlGiHRlWKd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~ 152 (296)
T KOG1540|consen 74 DIMNDAMSLGIHRLWKDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK 152 (296)
T ss_pred HHHHHHhhcchhHHHHHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh
Confidence 34555665443322232 344444 334578999999999999999999877 78999999 99988665
Q ss_pred -------CceEEeccCCc-CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchh
Q 044482 220 -------CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSI 289 (345)
Q Consensus 220 -------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~ 289 (345)
++.++.+|..+ |+|+. |.|.+..-+.+|++.+ +.|++++|+||| ||++.+. |+-.-++. ..
T Consensus 153 ~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKp---GGrf~cL-eFskv~~~---~l 223 (296)
T KOG1540|consen 153 RPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKP---GGRFSCL-EFSKVENE---PL 223 (296)
T ss_pred cCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCC---CcEEEEE-EccccccH---HH
Confidence 58999999998 99864 9999999999999985 889999999999 9999999 87543321 12
Q ss_pred hhhh--hccchh---------------hhhhcCCCccCCHHHHHHHHHHCCCCceE
Q 044482 290 NRNI--LTLDIV---------------MYDLFPQAKGRTAGEFKALAMAAGFGTIK 328 (345)
Q Consensus 290 ~~~~--~~~d~~---------------~~~~~~~~~~rt~~e~~~ll~~aGf~~~~ 328 (345)
.++. +.+|.. .|+.. =.+..+.+++..++++|||..+.
T Consensus 224 ~~fy~~ysf~VlpvlG~~iagd~~sYqYLveS-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 224 KWFYDQYSFDVLPVLGEIIAGDRKSYQYLVES-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHHHHhhhhhhhchhhHhhhhhHhhhhhHHhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence 2221 222221 01110 01345889999999999999886
No 15
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.66 E-value=7.2e-15 Score=130.90 Aligned_cols=166 Identities=20% Similarity=0.197 Sum_probs=120.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~ 235 (345)
.++..+. .....+|||||||+|.++..+++.+| ..+++++|+ +.+++.++ +++++.+|+.+ +.+.+
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 4455555 44557999999999999999999998 689999999 66666544 57889999987 44433
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhh----hhcCC---
Q 044482 236 --QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMY----DLFPQ--- 306 (345)
Q Consensus 236 --D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~--- 306 (345)
|+|++.+++|++++. ..+|+++.+.|+| ||++++. +...+..... ..........++ ....+
T Consensus 121 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~li~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 191 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDI--DKALREMYRVLKP---GGRLVIL-EFSKPTNPPL---KKAYDFYLFKVLPLIGKLISKNAE 191 (239)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHhccC---CcEEEEE-EecCCCchHH---HHHHHHHHHhhhHHHHHHHcCCcH
Confidence 999999999999876 4789999999999 9999999 7765433210 000000000000 00001
Q ss_pred ---------CccCCHHHHHHHHHHCCCCceEEEecC-CceEEEEEEcC
Q 044482 307 ---------AKGRTAGEFKALAMAAGFGTIKVICRS-YCYWVIEFYKP 344 (345)
Q Consensus 307 ---------~~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k~ 344 (345)
...++.++|.++|+++||+++++.... +...++.++||
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 192 AYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 123578999999999999999998865 56789999886
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.63 E-value=5.7e-15 Score=144.97 Aligned_cols=148 Identities=16% Similarity=0.227 Sum_probs=115.1
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC--
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-- 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-- 235 (345)
..+++.+. .....+|||||||+|..+..+++.+ +.+++++|+ +.+++.|+ +++|+.+|+++ ++|++
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 34566665 6667799999999999999998876 779999999 77777654 68999999988 66654
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|+|++..+++|+++. .++|++++++|+| ||++++. +........... ... .+... +...++.+++
T Consensus 334 D~I~s~~~l~h~~d~--~~~l~~~~r~Lkp---gG~l~i~-~~~~~~~~~~~~---~~~-----~~~~~-g~~~~~~~~~ 398 (475)
T PLN02336 334 DVIYSRDTILHIQDK--PALFRSFFKWLKP---GGKVLIS-DYCRSPGTPSPE---FAE-----YIKQR-GYDLHDVQAY 398 (475)
T ss_pred EEEEECCcccccCCH--HHHHHHHHHHcCC---CeEEEEE-EeccCCCCCcHH---HHH-----HHHhc-CCCCCCHHHH
Confidence 999999999999886 4789999999999 9999999 877654322111 111 11122 4557789999
Q ss_pred HHHHHHCCCCceEEEec
Q 044482 316 KALAMAAGFGTIKVICR 332 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~ 332 (345)
.++++++||+++++...
T Consensus 399 ~~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 399 GQMLKDAGFDDVIAEDR 415 (475)
T ss_pred HHHHHHCCCeeeeeecc
Confidence 99999999999877654
No 17
>PRK06922 hypothetical protein; Provisional
Probab=99.62 E-value=3.4e-15 Score=146.52 Aligned_cols=140 Identities=17% Similarity=0.206 Sum_probs=110.7
Q ss_pred cchhhhhccCchhHHHHHHHHHHhhHH--HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHh
Q 044482 139 IMDCIYLTMLPMMLNLFNQSMQNHTAI--VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVI 215 (345)
Q Consensus 139 ~~~~~~~~~~~~~~~~f~~~m~~~~~~--~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i 215 (345)
..+|+++..+++..++|...|...... ........++ +....+|||||||+|.++..+++++|+.+++++|+ +.|+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML 455 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI 455 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 467888888888888888777654321 1112233444 66778999999999999999999999999999999 7778
Q ss_pred hhCC--------CceEEeccCCc-C--CCCC--CEEEeccccccC-----------ChhHHHHHHHHHHhhCCCCCCCcE
Q 044482 216 KNAP--------CVEHVEGDMFV-N--VPSG--QAIFTKSVLLNW-----------SDEQCLKILKNCYDALPKSRKHGR 271 (345)
Q Consensus 216 ~~a~--------ri~~~~gd~~~-~--~p~~--D~i~~~~vlh~~-----------~d~~~~~iL~~~~~aL~p~~~gG~ 271 (345)
+.++ +++++.+|+.+ + ++++ |+|+++.++|+| ++++..++|++++++||| ||+
T Consensus 456 e~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GGr 532 (677)
T PRK06922 456 DTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GGR 532 (677)
T ss_pred HHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---CcE
Confidence 7665 46788899876 3 4443 999999999986 356778999999999999 999
Q ss_pred EEEEeccCCCCC
Q 044482 272 TQLRSKRGLPES 283 (345)
Q Consensus 272 lli~~d~~~~~~ 283 (345)
++|. |.+.+++
T Consensus 533 LII~-D~v~~E~ 543 (677)
T PRK06922 533 IIIR-DGIMTED 543 (677)
T ss_pred EEEE-eCccCCc
Confidence 9999 8876654
No 18
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.62 E-value=6.5e-15 Score=136.79 Aligned_cols=150 Identities=14% Similarity=0.124 Sum_probs=107.1
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC---------C-CceEEeccCCc-CCCCC-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA---------P-CVEHVEGDMFV-NVPSG- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a---------~-ri~~~~gd~~~-~~p~~- 235 (345)
.++..++.. ...+|||||||+|.++..+++..+. +++++|. +.++.++ . ++.++.+|+.+ +.+..
T Consensus 113 ~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 113 RVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 344555423 3479999999999999999998776 5999998 4444321 1 68999999876 55444
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCC-CccCCHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQ-AKGRTAGE 314 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~rt~~e 314 (345)
|+|++..++||..+. ..+|+++++.|+| ||++++. +.+.+........... .... + .+ -..+|.++
T Consensus 191 D~V~s~~vl~H~~dp--~~~L~~l~~~Lkp---GG~lvl~-~~~i~~~~~~~l~p~~-~y~~-----~-~~~~~lps~~~ 257 (322)
T PRK15068 191 DTVFSMGVLYHRRSP--LDHLKQLKDQLVP---GGELVLE-TLVIDGDENTVLVPGD-RYAK-----M-RNVYFIPSVPA 257 (322)
T ss_pred CEEEECChhhccCCH--HHHHHHHHHhcCC---CcEEEEE-EEEecCCCccccCchh-HHhc-----C-ccceeCCCHHH
Confidence 999999999999876 4789999999999 9999887 6665543321110000 0000 0 01 12358999
Q ss_pred HHHHHHHCCCCceEEEecC
Q 044482 315 FKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~~ 333 (345)
+.++|+++||+++++....
T Consensus 258 l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 258 LKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred HHHHHHHcCCceEEEEeCC
Confidence 9999999999999887653
No 19
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.61 E-value=2.1e-14 Score=126.51 Aligned_cols=162 Identities=17% Similarity=0.150 Sum_probs=118.1
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC--C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG--Q 236 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~--D 236 (345)
.+++.+. .....+|||+|||+|.++..+++.+|. .+++++|+ +.+++.++ +++++.+|+.+ +.+.+ |
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 4455544 445679999999999999999999987 78999999 67766544 58899999987 55543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhh---hhhcC-------C
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVM---YDLFP-------Q 306 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~---~~~~~-------~ 306 (345)
+|++..++|+.++. ..+|+++++.|+| ||++++. +...+... +. ....+..+ +.... +
T Consensus 109 ~i~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~-~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~ 176 (223)
T TIGR01934 109 AVTIAFGLRNVTDI--QKALREMYRVLKP---GGRLVIL-EFSKPANA--LL----KKFYKFYLKNVLPSIGGLISKNAE 176 (223)
T ss_pred EEEEeeeeCCcccH--HHHHHHHHHHcCC---CcEEEEE-EecCCCch--hh----HHHHHHHHHHhhhhhhhhhcCCch
Confidence 99999999998875 5789999999999 9999999 76544321 10 01111111 10000 0
Q ss_pred ---------CccCCHHHHHHHHHHCCCCceEEEecCCc-eEEEEEEc
Q 044482 307 ---------AKGRTAGEFKALAMAAGFGTIKVICRSYC-YWVIEFYK 343 (345)
Q Consensus 307 ---------~~~rt~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~k 343 (345)
....+.++|+++|+++||+++++.+..+. ..+++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 177 AYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 11347889999999999999999888765 45666654
No 20
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.61 E-value=1e-14 Score=134.23 Aligned_cols=149 Identities=13% Similarity=0.064 Sum_probs=105.7
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCC-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~- 235 (345)
.++..++ .....+|||||||+|.++..++...+. .++++|. +.++.+++ ++.+..+|+.+ +....
T Consensus 112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 4556555 344579999999999999999988765 7899998 55554321 67788888765 33334
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCch--hhhhhhccchhhhhhcCCCccCCHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSS--INRNILTLDIVMYDLFPQAKGRTAG 313 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~rt~~ 313 (345)
|+|++..+|||+++. ...|++++++|+| ||++++. +.+.+....... ...+..... .-...+.+
T Consensus 190 D~V~s~gvL~H~~dp--~~~L~el~r~Lkp---GG~Lvle-tl~i~g~~~~~l~p~~ry~k~~n--------v~flpS~~ 255 (314)
T TIGR00452 190 DTVFSMGVLYHRKSP--LEHLKQLKHQLVI---KGELVLE-TLVIDGDLNTVLVPKDRYAKMKN--------VYFIPSVS 255 (314)
T ss_pred CEEEEcchhhccCCH--HHHHHHHHHhcCC---CCEEEEE-EEEecCccccccCchHHHHhccc--------cccCCCHH
Confidence 999999999999877 4789999999999 9999998 765543321100 000000000 01235789
Q ss_pred HHHHHHHHCCCCceEEEecC
Q 044482 314 EFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~~ 333 (345)
++.++|+++||+.+++....
T Consensus 256 ~L~~~L~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 256 ALKNWLEKVGFENFRILDVL 275 (314)
T ss_pred HHHHHHHHCCCeEEEEEecc
Confidence 99999999999999887653
No 21
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.59 E-value=1.9e-14 Score=131.12 Aligned_cols=142 Identities=22% Similarity=0.263 Sum_probs=108.9
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC--CEEEecc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG--QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~--D~i~~~~ 242 (345)
.....+|||||||+|..+..+++.. +..+++++|. +.+++.++ +++++.+|+.+ +++++ |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 4567899999999999988877764 6678999999 88887765 68899999877 66653 9999999
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHC
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAA 322 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~a 322 (345)
++|++++. .++|+++++.|+| ||++++. +.+...... . . ...++.++..+ .+...+..+|.++|+++
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lkp---GG~l~i~-~~~~~~~~~--~--~--~~~~~~~~~~~-~~~~~~~~e~~~~l~~a 221 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKP---GGRFAIS-DVVLRGELP--E--E--IRNDAELYAGC-VAGALQEEEYLAMLAEA 221 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCC---CcEEEEE-EeeccCCCC--H--H--HHHhHHHHhcc-ccCCCCHHHHHHHHHHC
Confidence 99998876 4789999999999 9999999 876543211 1 0 11122232222 34567899999999999
Q ss_pred CCCceEEEe
Q 044482 323 GFGTIKVIC 331 (345)
Q Consensus 323 Gf~~~~~~~ 331 (345)
||..+++..
T Consensus 222 Gf~~v~i~~ 230 (272)
T PRK11873 222 GFVDITIQP 230 (272)
T ss_pred CCCceEEEe
Confidence 999987744
No 22
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.59 E-value=2e-14 Score=127.18 Aligned_cols=133 Identities=14% Similarity=0.149 Sum_probs=104.6
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCC-CEEEeccccccC
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG-QAIFTKSVLLNW 247 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~-D~i~~~~vlh~~ 247 (345)
++|||||||+|.++..+++.+|+.+++++|+ +.+++.++ +++++.+|+.+ +.+.. |+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999999 66766554 57999999876 45544 999999999999
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCce
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTI 327 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~ 327 (345)
++. ..+|+++++.|+| ||++++. +.+.+..... .. + .. .....+..+|.++++++||+++
T Consensus 81 ~~~--~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~-~~-------~-----~~-~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 81 KDK--MDLFSNISRHLKD---GGHLVLA-DFIANLLSAI-EH-------E-----ET-TSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred CCH--HHHHHHHHHHcCC---CCEEEEE-EcccccCccc-cc-------c-----cc-ccccCCHHHHHHHHHHCCCeEE
Confidence 875 5899999999999 9999999 8753321100 00 0 00 1123578999999999999999
Q ss_pred EEEecC
Q 044482 328 KVICRS 333 (345)
Q Consensus 328 ~~~~~~ 333 (345)
+.....
T Consensus 141 ~~~~~~ 146 (224)
T smart00828 141 EGVDAS 146 (224)
T ss_pred EeEECc
Confidence 887764
No 23
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.57 E-value=4.5e-14 Score=122.36 Aligned_cols=137 Identities=15% Similarity=0.136 Sum_probs=104.1
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC-
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG- 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~- 235 (345)
+.+++.++ .....+|||+|||+|..+..++++ ..+++++|+ +.+++.++ ++++...|+.+ +++..
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 35566666 455689999999999999999986 458999999 77777655 47888899877 45544
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|+|++..++|++++++...++++++++|+| ||+++++ +.+..++...+. . -....+.+|+
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~-~~~~~~~~~~~~--------~--------~~~~~~~~el 156 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIV-AAMDTADYPCTV--------G--------FPFAFKEGEL 156 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEE-EEecCCCCCCCC--------C--------CCCccCHHHH
Confidence 999999999999988889999999999999 9998777 554332211000 0 0122578899
Q ss_pred HHHHHHCCCCceEE
Q 044482 316 KALAMAAGFGTIKV 329 (345)
Q Consensus 316 ~~ll~~aGf~~~~~ 329 (345)
.++++ ||++++.
T Consensus 157 ~~~~~--~~~~~~~ 168 (197)
T PRK11207 157 RRYYE--GWEMVKY 168 (197)
T ss_pred HHHhC--CCeEEEe
Confidence 99887 8988765
No 24
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.57 E-value=1.1e-14 Score=134.49 Aligned_cols=140 Identities=14% Similarity=0.034 Sum_probs=101.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCC--CEEEecccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG--QAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~--D~i~~~~vl 244 (345)
...+|||||||+|.++..+++ ++.+++++|. +++++.|+ +++++.+|+.+ +.+.+ |+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 346899999999999998886 4678999999 78887665 57889999866 44433 999999999
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhcc-chhhhhhcC-C----CccCCHHHHHHH
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTL-DIVMYDLFP-Q----AKGRTAGEFKAL 318 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~-d~~~~~~~~-~----~~~rt~~e~~~l 318 (345)
||++|.. .+|+++++.|+| ||.++|. +...... ....... ....+...+ + .+.++.+|+.++
T Consensus 209 eHv~d~~--~~L~~l~r~LkP---GG~liis-t~nr~~~------~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~l 276 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIP---NGATVLS-TINRTMR------AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMI 276 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCC---CcEEEEE-ECCcCHH------HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHH
Confidence 9999884 799999999999 9999988 5421100 0000000 000111111 2 235789999999
Q ss_pred HHHCCCCceEEEec
Q 044482 319 AMAAGFGTIKVICR 332 (345)
Q Consensus 319 l~~aGf~~~~~~~~ 332 (345)
|+++||+++++..+
T Consensus 277 L~~aGf~i~~~~G~ 290 (322)
T PLN02396 277 LQRASVDVKEMAGF 290 (322)
T ss_pred HHHcCCeEEEEeee
Confidence 99999999888544
No 25
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.56 E-value=2e-14 Score=121.41 Aligned_cols=176 Identities=16% Similarity=0.209 Sum_probs=130.3
Q ss_pred HHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccC
Q 044482 154 LFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDM 228 (345)
Q Consensus 154 ~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~ 228 (345)
.|.++-...+++ +.+++..++ .....+|+|+|||+|..+..|++++|+..++++|. |+|++.|+ +++|..+|.
T Consensus 7 ~Yl~F~~eRtRP-a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl 84 (257)
T COG4106 7 QYLQFEDERTRP-ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADL 84 (257)
T ss_pred HHHHHHHhccCc-HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccH
Confidence 344443444444 457888888 88889999999999999999999999999999998 99999887 899999999
Q ss_pred CcCCC--CCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchh-----hh
Q 044482 229 FVNVP--SGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIV-----MY 301 (345)
Q Consensus 229 ~~~~p--~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~-----~~ 301 (345)
-+-.| +.|+++.+.+||.++|. .++|.+....|.| ||.|-+. +|++-..+.. ..+.+.. -.
T Consensus 85 ~~w~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~P---gg~LAVQ----mPdN~depsH---~~mr~~A~~~p~~~ 152 (257)
T COG4106 85 RTWKPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAP---GGVLAVQ----MPDNLDEPSH---RLMRETADEAPFAQ 152 (257)
T ss_pred hhcCCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCC---CceEEEE----CCCccCchhH---HHHHHHHhcCchhh
Confidence 88556 34999999999988877 5899999999999 9988887 5665444321 1111111 01
Q ss_pred hhcC----CCccCCHHHHHHHHHHCCCCceEEE------ecCCceEEEEEEcC
Q 044482 302 DLFP----QAKGRTAGEFKALAMAAGFGTIKVI------CRSYCYWVIEFYKP 344 (345)
Q Consensus 302 ~~~~----~~~~rt~~e~~~ll~~aGf~~~~~~------~~~~~~~vi~~~k~ 344 (345)
.+.. .....+...|-++|...+-+ +.|. ++++...|++++|-
T Consensus 153 ~l~~~~~~r~~v~s~a~Yy~lLa~~~~r-vDiW~T~Y~h~l~~a~aIvdWvkg 204 (257)
T COG4106 153 ELGGRGLTRAPLPSPAAYYELLAPLACR-VDIWHTTYYHQLPGADAIVDWVKG 204 (257)
T ss_pred hhCccccccCCCCCHHHHHHHhCcccce-eeeeeeeccccCCCccchhhheec
Confidence 1110 22345889999999988744 3443 33466788888863
No 26
>PRK08317 hypothetical protein; Provisional
Probab=99.56 E-value=9.7e-14 Score=123.47 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=110.1
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC--
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-- 235 (345)
.+++.++ .....+|||+|||+|.++..+++.+ |..+++++|+ +.+++.++ ++++..+|+.+ +++.+
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 3455566 6677899999999999999999998 7889999999 66665543 68899999876 66543
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCC-CchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPE-FSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|+|++.+++|++++. ..+++++++.|+| ||++++. +........ +........... .+... .....+..+
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~ 159 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLRP---GGRVVVL-DTDWDTLVWHSGDRALMRKILN--FWSDH-FADPWLGRR 159 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhcC---CcEEEEE-ecCCCceeecCCChHHHHHHHH--HHHhc-CCCCcHHHH
Confidence 999999999999886 4789999999999 9999998 753221110 000000111111 11111 233456678
Q ss_pred HHHHHHHCCCCceEEEec
Q 044482 315 FKALAMAAGFGTIKVICR 332 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~ 332 (345)
|.++++++||+++++...
T Consensus 160 ~~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 160 LPGLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHHHHcCCCceeEEEE
Confidence 999999999998876543
No 27
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.56 E-value=9.9e-15 Score=114.52 Aligned_cols=93 Identities=16% Similarity=0.257 Sum_probs=79.6
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccC-Cc-CCCCC-CEEEecc-cc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDM-FV-NVPSG-QAIFTKS-VL 244 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~-~~-~~p~~-D~i~~~~-vl 244 (345)
..+|||||||+|.++..+++++|+.+++++|. |++++.++ |++++.+|+ .. ..+.. |+|++.. .+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 46899999999999999999999999999999 88877655 899999999 33 33344 9999999 66
Q ss_pred ccCCh-hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 245 LNWSD-EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 245 h~~~d-~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|++.+ ++..++|+++++.|+| ||+++|.
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~ 110 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKP---GGRLVIN 110 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCC---CcEEEEE
Confidence 65543 6778999999999999 9999987
No 28
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.56 E-value=2.8e-14 Score=128.77 Aligned_cols=152 Identities=14% Similarity=0.057 Sum_probs=105.3
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc--CCCC-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV--NVPS- 234 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~--~~p~- 234 (345)
.+++.++ ....+|||||||+|.++..+++. ..+++++|+ +++++.|+ +++++.+|+.+ +.+.
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 4555544 34579999999999999999987 458999999 88888765 57899999876 3443
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccch---hh-----hhhcC
Q 044482 235 G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDI---VM-----YDLFP 305 (345)
Q Consensus 235 ~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~---~~-----~~~~~ 305 (345)
. |+|++..+||++++.. .+|+++++.|+| ||+++|. ........ ........++. .+ ....
T Consensus 112 ~fD~V~~~~vl~~~~~~~--~~l~~~~~~Lkp---gG~l~i~-~~n~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~- 181 (255)
T PRK11036 112 PVDLILFHAVLEWVADPK--SVLQTLWSVLRP---GGALSLM-FYNANGLL---MHNMVAGNFDYVQAGMPKRKKRTLS- 181 (255)
T ss_pred CCCEEEehhHHHhhCCHH--HHHHHHHHHcCC---CeEEEEE-EECccHHH---HHHHHccChHHHHhcCccccccCCC-
Confidence 3 9999999999998774 789999999999 9999887 43221100 00000000000 00 0000
Q ss_pred CCccCCHHHHHHHHHHCCCCceEEEecCC
Q 044482 306 QAKGRTAGEFKALAMAAGFGTIKVICRSY 334 (345)
Q Consensus 306 ~~~~rt~~e~~~ll~~aGf~~~~~~~~~~ 334 (345)
-....+.+++.++|+++||+++++.-+..
T Consensus 182 p~~~~~~~~l~~~l~~aGf~~~~~~gi~~ 210 (255)
T PRK11036 182 PDYPLDPEQVYQWLEEAGWQIMGKTGVRV 210 (255)
T ss_pred CCCCCCHHHHHHHHHHCCCeEeeeeeEEE
Confidence 12246789999999999999987765543
No 29
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.56 E-value=1.7e-13 Score=123.83 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=107.6
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCcCCC-CC-CEEE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFVNVP-SG-QAIF 239 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~~~p-~~-D~i~ 239 (345)
...+++.++ ..+..+|||||||+|.++..+++++|+.+++++|+ +.+++.++ +++++.+|+.+..+ .. |+|+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 456777777 77778999999999999999999999999999999 88888776 78899999876333 33 9999
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhh--h-ccchhhhhhcCC---CccCCHH
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNI--L-TLDIVMYDLFPQ---AKGRTAG 313 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~--~-~~d~~~~~~~~~---~~~rt~~ 313 (345)
++.++|+.+|. .++|++++++|+| ||++++. - ++....+...... . ...+.......+ ....+.+
T Consensus 99 ~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~~~~~-~---~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 169 (258)
T PRK01683 99 ANASLQWLPDH--LELFPRLVSLLAP---GGVLAVQ-M---PDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPH 169 (258)
T ss_pred EccChhhCCCH--HHHHHHHHHhcCC---CcEEEEE-C---CCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHH
Confidence 99999988876 4799999999999 9998886 2 2211111100000 0 000000000001 2345778
Q ss_pred HHHHHHHHCCCCc
Q 044482 314 EFKALAMAAGFGT 326 (345)
Q Consensus 314 e~~~ll~~aGf~~ 326 (345)
++.+++.++|+.+
T Consensus 170 ~~~~~l~~~g~~v 182 (258)
T PRK01683 170 AYYDALAPAACRV 182 (258)
T ss_pred HHHHHHHhCCCce
Confidence 9999999999864
No 30
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.53 E-value=6.2e-15 Score=122.45 Aligned_cols=135 Identities=20% Similarity=0.235 Sum_probs=97.4
Q ss_pred cccceEEecCCccHHHHHHH-HHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-C--CCCC-CEEEeccc
Q 044482 179 ELKKLVDVASCLGANMSLIV-NTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-N--VPSG-QAIFTKSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~-~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~--~p~~-D~i~~~~v 243 (345)
+..+|||+|||+|.++..++ +.+|..+++++|+ +.+++.|+ +++|+.+|+.+ + ++.. |+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 45789999999999999999 5688999999999 88888776 69999999999 4 3334 99999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAG 323 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aG 323 (345)
+|++++.. .+|+++.+.|++ +|.+++. +....+........... +-...+.....+. ..++|..+|++||
T Consensus 83 l~~~~~~~--~~l~~~~~~lk~---~G~~i~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 83 LHHFPDPE--KVLKNIIRLLKP---GGILIIS-DPNHNDELPEQLEELMN--LYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp GGGTSHHH--HHHHHHHHHEEE---EEEEEEE-EEEHSHHHHHHHHHHHH--HHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred hhhccCHH--HHHHHHHHHcCC---CcEEEEE-ECChHHHHHHHHHHHHH--HHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 99999884 789999999999 9999998 66521110000000000 0011111111112 7889999999998
No 31
>PRK05785 hypothetical protein; Provisional
Probab=99.52 E-value=5.9e-13 Score=117.74 Aligned_cols=151 Identities=13% Similarity=0.075 Sum_probs=106.6
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-CceEEeccCCc-CCCCC--CEEEeccccccCChhHHHH
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCLK 254 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~ 254 (345)
..+|||||||+|.++..+++++ +.+++++|+ ++|++.|+ +..++.+|+.+ |++++ |+|++..+||+++|.+ +
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~--~ 128 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIE--K 128 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHH--H
Confidence 5799999999999999999987 578999999 99999888 66778899987 77754 9999999999998874 7
Q ss_pred HHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchh---hhhhcCCC-------------ccCCHHHHHHH
Q 044482 255 ILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIV---MYDLFPQA-------------KGRTAGEFKAL 318 (345)
Q Consensus 255 iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~-------------~~rt~~e~~~l 318 (345)
.|++++++|+| . +.|+ |.-.++... ........+... +.... ++ ...+.+++.++
T Consensus 129 ~l~e~~RvLkp---~--~~il-e~~~p~~~~--~~~~~~~y~~~~~P~~~~~~-~~~~~~Y~yl~~si~~f~~~~~~~~~ 199 (226)
T PRK05785 129 VIAEFTRVSRK---Q--VGFI-AMGKPDNVI--KRKYLSFYLRYIMPYIACLA-GAKCRDYKYIYYIYERLPTNSFHREI 199 (226)
T ss_pred HHHHHHHHhcC---c--eEEE-EeCCCCcHH--HHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 89999999999 4 3455 443333210 000000011100 00111 11 23478999999
Q ss_pred HHHCCCCceEEEecCCc-eEEEEEEc
Q 044482 319 AMAAGFGTIKVICRSYC-YWVIEFYK 343 (345)
Q Consensus 319 l~~aGf~~~~~~~~~~~-~~vi~~~k 343 (345)
++++| +.++.+...++ .++..++|
T Consensus 200 ~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 200 FEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHh-CceEEEEccccEEEEEEEee
Confidence 99984 77888777654 45666655
No 32
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.52 E-value=5.3e-14 Score=117.39 Aligned_cols=135 Identities=19% Similarity=0.193 Sum_probs=94.9
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCCCceEEeccCCc-CCCCC--CEEEeccccccCChhHHH
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAPCVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCL 253 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~ 253 (345)
....+|||||||.|.++..+++... +++++|. +.+++. .++.....+... ..+++ |+|++..+|||++|. .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~--~ 95 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK-RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDP--E 95 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH-TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHH--H
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh-hhhhhhhhhhhhhhccccchhhHhhHHHHhhcccH--H
Confidence 4567999999999999999966644 8999999 777766 323333332223 33333 999999999999974 6
Q ss_pred HHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhc-CCCccCCHHHHHHHHHHCCCCceE
Q 044482 254 KILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLF-PQAKGRTAGEFKALAMAAGFGTIK 328 (345)
Q Consensus 254 ~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~rt~~e~~~ll~~aGf~~~~ 328 (345)
.+|+++++.|+| ||.+++. +...... ... ....+.+.... .....++.++|+++++++||++++
T Consensus 96 ~~l~~l~~~Lkp---gG~l~~~-~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 96 EFLKELSRLLKP---GGYLVIS-DPNRDDP----SPR---SFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHCEEE---EEEEEEE-EEBTTSH----HHH---HHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHhcCC---CCEEEEE-EcCCcch----hhh---HHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 899999999999 9999999 7654321 000 01111111110 134578999999999999999875
No 33
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=2.1e-13 Score=121.95 Aligned_cols=155 Identities=21% Similarity=0.172 Sum_probs=125.7
Q ss_pred HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS 234 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~ 234 (345)
..+.+++.+. +.++.+|||||||.|.+++..+++| +.+++++++ ++..+.++ ++++...|..+....
T Consensus 60 k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 60 KLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 3457788888 9999999999999999999999999 899999999 55554443 688888887653323
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 235 GQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 235 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
-|-|+....++|+..+.-...++++++.|+| ||+++++ ....++.+.. ...++..--++|||..++..+
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh-~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~ 206 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLH-SITGPDQEFR-------RFPDFIDKYIFPGGELPSISE 206 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEE-EecCCCcccc-------cchHHHHHhCCCCCcCCCHHH
Confidence 5999999999999999989999999999999 9999999 7776654321 122333333457999999999
Q ss_pred HHHHHHHCCCCceEEEecC
Q 044482 315 FKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~~ 333 (345)
..+..+++||.+.+....+
T Consensus 207 i~~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 207 ILELASEAGFVVLDVESLR 225 (283)
T ss_pred HHHHHHhcCcEEehHhhhc
Confidence 9999999999988776554
No 34
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.51 E-value=3.1e-13 Score=116.95 Aligned_cols=137 Identities=14% Similarity=0.066 Sum_probs=101.1
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-CE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-QA 237 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D~ 237 (345)
.+++.++ .....+|||+|||+|.++..++++ +.+++++|+ |.+++.++ ++++...|+.. ++++. |+
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence 4555555 444579999999999999999985 468999999 77887654 46677778765 44444 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHH
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKA 317 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ 317 (345)
|++..++|++++++...+++++++.|+| ||+++|+ +....+....+. +.....+.+|+.+
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~-~~~~~~~~~~~~----------------~~~~~~~~~el~~ 157 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIV-AAMDTADYPCHM----------------PFSFTFKEDELRQ 157 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEE-EecccCCCCCCC----------------CcCccCCHHHHHH
Confidence 9999999999988888999999999999 9998887 654332211000 0112357889999
Q ss_pred HHHHCCCCceEEE
Q 044482 318 LAMAAGFGTIKVI 330 (345)
Q Consensus 318 ll~~aGf~~~~~~ 330 (345)
+++ +|+++...
T Consensus 158 ~f~--~~~~~~~~ 168 (195)
T TIGR00477 158 YYA--DWELLKYN 168 (195)
T ss_pred HhC--CCeEEEee
Confidence 886 48777665
No 35
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.50 E-value=1.6e-13 Score=124.22 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=109.9
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~ 235 (345)
...+++.++ .++..+|||||||.|.++..++++| +++++++.+ ++-.+.++ ++++...|+.+.-++-
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 456788887 8889999999999999999999999 889999999 44444332 6889999987622233
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|.|++..++.|+..+....+++++.+.|+| ||++++. .....+.... .......++..--++|||...+..++
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq-~i~~~~~~~~---~~~~~~~~~i~kyiFPgg~lps~~~~ 201 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQ-TITHRDPPYH---AERRSSSDFIRKYIFPGGYLPSLSEI 201 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEE-EEEE--HHHH---HCTTCCCHHHHHHTSTTS---BHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEE-ecccccccch---hhcCCCceEEEEeeCCCCCCCCHHHH
Confidence 999999999999988888999999999999 9999988 7766543211 00011123333344578999999999
Q ss_pred HHHHHHCCCCceEEEecC
Q 044482 316 KALAMAAGFGTIKVICRS 333 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~~ 333 (345)
...++++||++..+...+
T Consensus 202 ~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 202 LRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHHTT-EEEEEEE-H
T ss_pred HHHHhcCCEEEEEEEEcC
Confidence 999999999998877653
No 36
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.50 E-value=5.9e-13 Score=117.37 Aligned_cols=178 Identities=11% Similarity=0.036 Sum_probs=115.4
Q ss_pred hhhhccCchhHHHHHHHHHHhhHHHHHHHHHhccC-cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC
Q 044482 142 CIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKG-FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP 219 (345)
Q Consensus 142 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~-~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ 219 (345)
|+.+..++.....+...|..........+++.+.. .....+|||||||+|.++..+++. ..+++++|. |.+++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~ 94 (219)
T TIGR02021 17 WARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMAR 94 (219)
T ss_pred HHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 33333444444556666644444444555555441 334689999999999999999876 458999998 88887665
Q ss_pred ----------CceEEeccCCcCCCCCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchh
Q 044482 220 ----------CVEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSI 289 (345)
Q Consensus 220 ----------ri~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~ 289 (345)
++++..+|+.+...+-|+|++..+++++++++...+++++++.+++ ++.+.+. +.. . ..
T Consensus 95 ~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~---~~~i~~~-----~~~--~-~~ 163 (219)
T TIGR02021 95 NRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKE---RVIFTFA-----PKT--A-WL 163 (219)
T ss_pred HHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCC---CEEEEEC-----CCc--h-HH
Confidence 5789999987632233999999999999988888899999998887 5433222 111 0 00
Q ss_pred hhhhhccchhhhh--hcCCCccCCHHHHHHHHHHCCCCceEEEecC
Q 044482 290 NRNILTLDIVMYD--LFPQAKGRTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 290 ~~~~~~~d~~~~~--~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
... ..+.-.... ....-..++.++++++++++||++++.....
T Consensus 164 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 164 AFL-KMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred HHH-HHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 000 000000000 0001234589999999999999999887664
No 37
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.49 E-value=6.1e-14 Score=106.16 Aligned_cols=85 Identities=21% Similarity=0.310 Sum_probs=73.5
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCc-CCCCC--CEEEeccccccCChhHHH
Q 044482 184 VDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCL 253 (345)
Q Consensus 184 lDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~ 253 (345)
||||||+|..+..++++ +..+++++|. +.+++.++ +++++.+|+.+ ++|++ |+|++.+++|++ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 79999999999999999 8889999999 77777666 56799999988 77755 999999999999 4446
Q ss_pred HHHHHHHhhCCCCCCCcEEEE
Q 044482 254 KILKNCYDALPKSRKHGRTQL 274 (345)
Q Consensus 254 ~iL~~~~~aL~p~~~gG~lli 274 (345)
+++++++|+||| ||+++|
T Consensus 78 ~~l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHHHcCc---CeEEeC
Confidence 899999999999 999876
No 38
>PRK06202 hypothetical protein; Provisional
Probab=99.48 E-value=8.2e-13 Score=117.49 Aligned_cols=141 Identities=12% Similarity=-0.003 Sum_probs=98.0
Q ss_pred ccccceEEecCCccHHHHHHHHH----CCCCeEEEeeh-hhHhhhCC------CceEEeccCCc-CCCC-C-CEEEeccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNT----YPQITGINFDL-PYVIKNAP------CVEHVEGDMFV-NVPS-G-QAIFTKSV 243 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~----~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~-~~p~-~-D~i~~~~v 243 (345)
.+..+|||||||+|.++..|++. .|+.+++++|+ |.+++.++ ++++..++... +.++ . |+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45679999999999999988764 46679999999 88988776 46666665433 3343 3 99999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhh------hhcCC----CccCCHH
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMY------DLFPQ----AKGRTAG 313 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~----~~~rt~~ 313 (345)
|||+++++..++|+++++.++. .++|. |...+.. . . . ........ ...++ ...+|.+
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~~-----~~~i~-dl~~~~~--~-~---~-~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~ 205 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALARR-----LVLHN-DLIRSRL--A-Y---A-LFWAGTRLLSRSSFVHTDGLLSVRRSYTPA 205 (232)
T ss_pred eecCChHHHHHHHHHHHHhcCe-----eEEEe-ccccCHH--H-H---H-HHHHHHHHhccCceeeccchHHHHhhcCHH
Confidence 9999998888999999999874 56666 5543311 0 0 0 00000000 00000 1357899
Q ss_pred HHHHHHHHCCCCceEEEec
Q 044482 314 EFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~ 332 (345)
|+.+++++ ||++.+..+.
T Consensus 206 el~~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 206 ELAALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHHHHhhC-CCeEEeccce
Confidence 99999999 9998776554
No 39
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.45 E-value=1.2e-12 Score=120.77 Aligned_cols=130 Identities=15% Similarity=0.138 Sum_probs=92.4
Q ss_pred CcchhhhhccCchhHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHh
Q 044482 138 HIMDCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVI 215 (345)
Q Consensus 138 g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i 215 (345)
|..+|+-+.+.|+.... ..-+. .-...++.+++.++ ...+|||+|||+|..+..|+++.+ ..+++++|+ ++|+
T Consensus 27 G~~lf~~i~~~peYy~t-r~E~~-il~~~~~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL 101 (301)
T TIGR03438 27 GSELFEQICELPEYYPT-RTEAA-ILERHADEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADAL 101 (301)
T ss_pred HHHHHHHHHCCCccccH-HHHHH-HHHHHHHHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHH
Confidence 44555555555554321 11111 11122345555543 446899999999999999999987 588999999 7787
Q ss_pred hhCC----------CceEEeccCCcC--CCC-----C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 216 KNAP----------CVEHVEGDMFVN--VPS-----G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 216 ~~a~----------ri~~~~gd~~~~--~p~-----~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+.+. +++++.+|+.+. ++. . .++++.+.+++++++++..+|++++++|+| ||.++|.
T Consensus 102 ~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~lig 176 (301)
T TIGR03438 102 KESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLIG 176 (301)
T ss_pred HHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEEe
Confidence 6554 466789999873 332 2 356677899999999999999999999999 9998874
No 40
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.43 E-value=8.8e-14 Score=106.79 Aligned_cols=84 Identities=20% Similarity=0.324 Sum_probs=58.0
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------CceEEeccCCcCCCC-C-CEEEeccccccCC
Q 044482 184 VDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------CVEHVEGDMFVNVPS-G-QAIFTKSVLLNWS 248 (345)
Q Consensus 184 lDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~~~p~-~-D~i~~~~vlh~~~ 248 (345)
||||||+|.++..+++++|..+++++|+ |.+++.++ ++++...|.++..+. . |+|++.++|||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 88997776 234444444443332 4 9999999999994
Q ss_pred hhHHHHHHHHHHhhCCCCCCCcEE
Q 044482 249 DEQCLKILKNCYDALPKSRKHGRT 272 (345)
Q Consensus 249 d~~~~~iL~~~~~aL~p~~~gG~l 272 (345)
+ ...+|+++++.|+| ||+|
T Consensus 81 ~--~~~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 81 D--IEAVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TS---S-EE
T ss_pred h--HHHHHHHHHHHcCC---CCCC
Confidence 4 45899999999999 9975
No 41
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.43 E-value=3.1e-12 Score=113.79 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=101.4
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCCc-CCCCC--CEEEeccccccCChh
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDE 250 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~ 250 (345)
..+|||||||+|.++..+++.+|..+++++|. +.+++.++ +++++.+|+.+ ++++. |+|++.+++|+.++.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~ 114 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDL 114 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccCH
Confidence 46899999999999999999999999999999 77776555 68999999987 55543 999999999988775
Q ss_pred HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEE
Q 044482 251 QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVI 330 (345)
Q Consensus 251 ~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~ 330 (345)
.++|+++++.|+| ||.+++. +...... .. .... .... +....+.++|.+++.++ |+.+.+.
T Consensus 115 --~~~l~~~~~~L~~---~G~l~~~-~~~~~~~-----~~----~~~~--~~~~-~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 115 --SQALSELARVLKP---GGLLAFS-TFGPGTL-----HE----LRQS--FGQH-GLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred --HHHHHHHHHHcCC---CcEEEEE-eCCccCH-----HH----HHHH--HHHh-ccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4789999999999 9999988 5432211 00 0000 0111 34456889999999998 8877654
No 42
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.43 E-value=4.1e-12 Score=114.35 Aligned_cols=145 Identities=10% Similarity=0.102 Sum_probs=103.2
Q ss_pred HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC--CE
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG--QA 237 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~--D~ 237 (345)
.+..+++.++ .....+|||+|||+|.++..+++. ..+++++|+ |.+++.++ .+.++.+|+.+ +++++ |+
T Consensus 30 ~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~ 106 (251)
T PRK10258 30 SADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDL 106 (251)
T ss_pred HHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEE
Confidence 3455666665 445678999999999999988764 468999999 88988777 36789999977 66654 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHH
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKA 317 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ 317 (345)
|+++..+|+.++. ..+|++++++|+| ||.+++. ......-+ .........+. ... .....+.+++.+
T Consensus 107 V~s~~~l~~~~d~--~~~l~~~~~~Lk~---gG~l~~~-~~~~~~~~---el~~~~~~~~~---~~~-~~~~~~~~~l~~ 173 (251)
T PRK10258 107 AWSNLAVQWCGNL--STALRELYRVVRP---GGVVAFT-TLVQGSLP---ELHQAWQAVDE---RPH-ANRFLPPDAIEQ 173 (251)
T ss_pred EEECchhhhcCCH--HHHHHHHHHHcCC---CeEEEEE-eCCCCchH---HHHHHHHHhcc---CCc-cccCCCHHHHHH
Confidence 9999999877665 5789999999999 9999988 55432211 00000000010 011 233468899999
Q ss_pred HHHHCCCCc
Q 044482 318 LAMAAGFGT 326 (345)
Q Consensus 318 ll~~aGf~~ 326 (345)
++...|+..
T Consensus 174 ~l~~~~~~~ 182 (251)
T PRK10258 174 ALNGWRYQH 182 (251)
T ss_pred HHHhCCcee
Confidence 999988764
No 43
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.42 E-value=2.6e-12 Score=117.88 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=97.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-CEEEeccccccC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-QAIFTKSVLLNW 247 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D~i~~~~vlh~~ 247 (345)
...+|||||||+|..+..+++. +.+++++|. +.+++.++ ++++..+|+.+ .++.. |+|++..+||++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 4469999999999999999885 478999999 77777554 57788888876 34444 999999999999
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCce
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTI 327 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~ 327 (345)
++++...+++++++.|+| ||.++++ ..+..+....+ .+-...++.+|++++++. |+++
T Consensus 198 ~~~~~~~~l~~~~~~Lkp---gG~~l~v-~~~~~~~~~~~----------------~p~~~~~~~~el~~~~~~--~~i~ 255 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNP---GGYNLIV-CAMDTEDYPCP----------------MPFSFTFKEGELKDYYQD--WEIV 255 (287)
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEE-EecccccCCCC----------------CCCCcccCHHHHHHHhCC--CEEE
Confidence 988889999999999999 9998877 54432221100 001223568899999865 8887
Q ss_pred EEE
Q 044482 328 KVI 330 (345)
Q Consensus 328 ~~~ 330 (345)
+..
T Consensus 256 ~~~ 258 (287)
T PRK12335 256 KYN 258 (287)
T ss_pred EEe
Confidence 764
No 44
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.42 E-value=1.5e-12 Score=113.24 Aligned_cols=99 Identities=13% Similarity=0.296 Sum_probs=84.8
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCcCCCCC--CEEEeccccccCChh
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFVNVPSG--QAIFTKSVLLNWSDE 250 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~~~p~~--D~i~~~~vlh~~~d~ 250 (345)
....+|||||||+|.++..+++..|..+++++|+ +++++.|+ ++++..+|+.++++++ |+|++..+|||++++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHH
Confidence 3557899999999999999999889999999999 88988876 6889999998866643 999999999999988
Q ss_pred HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 251 QCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 251 ~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
+..++++++++.++ +.++|. |...+.
T Consensus 122 ~~~~~l~el~r~~~-----~~v~i~-e~~~~~ 147 (204)
T TIGR03587 122 NLPTAYRELYRCSN-----RYILIA-EYYNPS 147 (204)
T ss_pred HHHHHHHHHHhhcC-----cEEEEE-EeeCCC
Confidence 88999999999864 477777 775543
No 45
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.42 E-value=1.8e-12 Score=111.49 Aligned_cols=123 Identities=18% Similarity=0.206 Sum_probs=95.3
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCCC-CEE
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPSG-QAI 238 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~~-D~i 238 (345)
+++.++ .....+|||||||+|.++..+++++|+.+++++|. +.+++.++ +++++.+|...+++.. |+|
T Consensus 23 ~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v 101 (187)
T PRK08287 23 ALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAI 101 (187)
T ss_pred HHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEE
Confidence 345555 66778999999999999999999999999999999 77777664 5788889876555544 999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHH
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKAL 318 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~l 318 (345)
++....+++ ..+++++++.|+| ||++++. .... -+.+++.++
T Consensus 102 ~~~~~~~~~-----~~~l~~~~~~Lk~---gG~lv~~-~~~~-----------------------------~~~~~~~~~ 143 (187)
T PRK08287 102 FIGGSGGNL-----TAIIDWSLAHLHP---GGRLVLT-FILL-----------------------------ENLHSALAH 143 (187)
T ss_pred EECCCccCH-----HHHHHHHHHhcCC---CeEEEEE-EecH-----------------------------hhHHHHHHH
Confidence 998765443 4689999999999 9998776 3210 124667889
Q ss_pred HHHCCCCceEEEe
Q 044482 319 AMAAGFGTIKVIC 331 (345)
Q Consensus 319 l~~aGf~~~~~~~ 331 (345)
+++.||+.++++.
T Consensus 144 l~~~g~~~~~~~~ 156 (187)
T PRK08287 144 LEKCGVSELDCVQ 156 (187)
T ss_pred HHHCCCCcceEEE
Confidence 9999998777543
No 46
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.42 E-value=1.9e-12 Score=127.16 Aligned_cols=140 Identities=17% Similarity=0.175 Sum_probs=108.4
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc---CCCCC-
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV---NVPSG- 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~---~~p~~- 235 (345)
..+++.++ .....+|||||||+|.++..+++.+. +++++|. +.+++.++ +++++.+|+.+ ++|++
T Consensus 27 ~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 103 (475)
T PLN02336 27 PEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGS 103 (475)
T ss_pred hHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCC
Confidence 45666666 44567999999999999999998864 6899998 77876553 68899999964 44543
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|+|++..++|++++++..++|+++++.|+| ||++++. |.+........ .. .. ....|+..+
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~-d~~~~~~~~~~------~~-------~~-~~~~~~~~~ 165 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFR-ESCFHQSGDSK------RK-------NN-PTHYREPRF 165 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEE-eccCCCCCccc------cc-------CC-CCeecChHH
Confidence 999999999999999889999999999999 9999999 87654331100 00 11 233466889
Q ss_pred HHHHHHHCCCCceE
Q 044482 315 FKALAMAAGFGTIK 328 (345)
Q Consensus 315 ~~~ll~~aGf~~~~ 328 (345)
|.+++.++||....
T Consensus 166 ~~~~f~~~~~~~~~ 179 (475)
T PLN02336 166 YTKVFKECHTRDED 179 (475)
T ss_pred HHHHHHHheeccCC
Confidence 99999999998754
No 47
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.42 E-value=7.6e-12 Score=110.95 Aligned_cols=142 Identities=11% Similarity=0.073 Sum_probs=96.5
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC-CCEEEeccccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS-GQAIFTKSVLL 245 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~-~D~i~~~~vlh 245 (345)
.+..+|||||||+|.++..++++.+ +++++|+ +.+++.++ ++++..+|+ +.... -|+|++..++|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDL-ESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc-hhccCCcCEEEEcchhh
Confidence 4457999999999999999998754 5999998 77777665 578888984 32223 39999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhh-hhhcCCCccCCHHHHHHHHHHCCC
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVM-YDLFPQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~rt~~e~~~ll~~aGf 324 (345)
||+++....+++++.+.+++ |.++.. .. .. . ............. ..........+.++|.++++++||
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~----~~~i~~-~~---~~--~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 207 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRG----SLIFTF-AP---YT--P-LLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGF 207 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCC----eEEEEE-CC---cc--H-HHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCC
Confidence 99999999999999987654 333333 11 11 0 0000000000000 000012334688999999999999
Q ss_pred CceEEEecC
Q 044482 325 GTIKVICRS 333 (345)
Q Consensus 325 ~~~~~~~~~ 333 (345)
++.++.+..
T Consensus 208 ~~~~~~~~~ 216 (230)
T PRK07580 208 KVVRTERIS 216 (230)
T ss_pred ceEeeeecc
Confidence 999987765
No 48
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.41 E-value=2.1e-13 Score=105.19 Aligned_cols=85 Identities=20% Similarity=0.276 Sum_probs=71.4
Q ss_pred eEEecCCccHHHHHHHHHC---CCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC--CEEEec-ccccc
Q 044482 183 LVDVASCLGANMSLIVNTY---PQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG--QAIFTK-SVLLN 246 (345)
Q Consensus 183 vlDiGgG~G~~~~~l~~~~---p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~--D~i~~~-~vlh~ 246 (345)
|||+|||+|..+..+++.+ |+.+++++|+ +++++.++ +++++.+|+.+ ++..+ |+|++. .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999997 5689999999 88888766 67999999987 54443 999995 55999
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCc
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHG 270 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG 270 (345)
+++++..++|+++++.|+| ||
T Consensus 81 ~~~~~~~~ll~~~~~~l~p---gG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP---GG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE---EE
T ss_pred CCHHHHHHHHHHHHHHhCC---CC
Confidence 9999999999999999999 87
No 49
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.41 E-value=1.9e-12 Score=117.09 Aligned_cols=95 Identities=20% Similarity=0.316 Sum_probs=79.9
Q ss_pred ccccceEEecCCccH----HHHHHHHHCC-----CCeEEEeeh-hhHhhhCC----------------------------
Q 044482 178 KELKKLVDVASCLGA----NMSLIVNTYP-----QITGINFDL-PYVIKNAP---------------------------- 219 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~----~~~~l~~~~p-----~~~~~~~Dl-p~~i~~a~---------------------------- 219 (345)
....+|+|+|||+|. +++.+++..| +.++++.|+ +.+++.|+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 5667777665 478999999 88887554
Q ss_pred --------CceEEeccCCc-CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 --------CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 --------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|+|..+|+.+ +.|.+ |+|+|+++||+|+++...+++++++++|+| ||.+++-
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg 241 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLG 241 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEE
Confidence 36889999998 44433 999999999999999889999999999999 9999987
No 50
>PRK04266 fibrillarin; Provisional
Probab=99.40 E-value=6e-12 Score=110.96 Aligned_cols=141 Identities=16% Similarity=0.113 Sum_probs=98.8
Q ss_pred hccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhh----hCC---CceEEeccCCcC-----CCCC-CEE
Q 044482 173 IYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIK----NAP---CVEHVEGDMFVN-----VPSG-QAI 238 (345)
Q Consensus 173 ~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~----~a~---ri~~~~gd~~~~-----~p~~-D~i 238 (345)
.++ ..+..+|||+|||+|.++..+++..+..+++++|. +++++ .++ ++.++.+|..++ +++. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 455 66778999999999999999999988778999999 76665 333 789999998653 2233 888
Q ss_pred EeccccccCChh-HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHH
Q 044482 239 FTKSVLLNWSDE-QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKA 317 (345)
Q Consensus 239 ~~~~vlh~~~d~-~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ 317 (345)
+ |+.+++ +...+|+++++.||| ||+++|.-.. .+ .|+.. ... +..++..+
T Consensus 146 ~-----~d~~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~-~~--------------~d~~~-----~~~-~~~~~~~~ 196 (226)
T PRK04266 146 Y-----QDVAQPNQAEIAIDNAEFFLKD---GGYLLLAIKA-RS--------------IDVTK-----DPK-EIFKEEIR 196 (226)
T ss_pred E-----ECCCChhHHHHHHHHHHHhcCC---CcEEEEEEec-cc--------------ccCcC-----CHH-HHHHHHHH
Confidence 7 444443 334678999999999 9999993021 10 01000 001 11244569
Q ss_pred HHHHCCCCceEEEecCCc---eEEEEEEc
Q 044482 318 LAMAAGFGTIKVICRSYC---YWVIEFYK 343 (345)
Q Consensus 318 ll~~aGf~~~~~~~~~~~---~~vi~~~k 343 (345)
+++++||+.++....... +..+.+++
T Consensus 197 ~l~~aGF~~i~~~~l~p~~~~h~~~v~~~ 225 (226)
T PRK04266 197 KLEEGGFEILEVVDLEPYHKDHAAVVARK 225 (226)
T ss_pred HHHHcCCeEEEEEcCCCCcCCeEEEEEEc
Confidence 999999999999887543 77777665
No 51
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.40 E-value=6.1e-12 Score=107.36 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=102.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCCC-CEEEeccccccCC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPSG-QAIFTKSVLLNWS 248 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~~-D~i~~~~vlh~~~ 248 (345)
...+|||+|||+|.++..+++..+ +++++|+ |.+++.++ +++++.+|+++..+.. |+|+++..+|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 346899999999999999999876 8999998 88887666 5788899988743433 9999998887775
Q ss_pred hhH-------------------HHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCcc
Q 044482 249 DEQ-------------------CLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKG 309 (345)
Q Consensus 249 d~~-------------------~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 309 (345)
++. ..++|+++.+.|+| ||+++++ +...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~-~~~~----------------------------- 143 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLI-QSSL----------------------------- 143 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEE-Eecc-----------------------------
Confidence 431 35689999999999 9999998 3211
Q ss_pred CCHHHHHHHHHHCCCCceEEEecCCceEEEEEEc
Q 044482 310 RTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 310 rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 343 (345)
....++.++++++||....+..-....-.++++|
T Consensus 144 ~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 144 NGEPDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred CChHHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 1146778999999999988877776777777766
No 52
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.36 E-value=1.6e-11 Score=116.71 Aligned_cols=150 Identities=13% Similarity=0.057 Sum_probs=112.0
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCcCCCCC-CEEE
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFVNVPSG-QAIF 239 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~~~p~~-D~i~ 239 (345)
..+++.++ ..+..+|||||||+|.++..+++++ +.+++++|+ +++++.++ ++++..+|+.+. +.. |+|+
T Consensus 157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l-~~~fD~Iv 233 (383)
T PRK11705 157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL-NGQFDRIV 233 (383)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc-CCCCCEEE
Confidence 35666666 6777899999999999999999876 679999999 88887766 467777887542 333 9999
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHH
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALA 319 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll 319 (345)
+..+++|.+++....+++++++.|+| ||++++. +...+...... . ..++- . .+++|...+.+++.+.+
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~-~i~~~~~~~~~-~----~~i~~--y-ifp~g~lps~~~i~~~~ 301 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLH-TIGSNKTDTNV-D----PWINK--Y-IFPNGCLPSVRQIAQAS 301 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCC---CcEEEEE-EccCCCCCCCC-C----CCcee--e-ecCCCcCCCHHHHHHHH
Confidence 99999999888778999999999999 9999998 76544322111 0 11111 1 23577788899988886
Q ss_pred HHCCCCceEEEecC
Q 044482 320 MAAGFGTIKVICRS 333 (345)
Q Consensus 320 ~~aGf~~~~~~~~~ 333 (345)
+ .||.+.++...+
T Consensus 302 ~-~~~~v~d~~~~~ 314 (383)
T PRK11705 302 E-GLFVMEDWHNFG 314 (383)
T ss_pred H-CCcEEEEEecCh
Confidence 6 589887776554
No 53
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.34 E-value=9.6e-12 Score=111.51 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=100.6
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC--C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP--S 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p--~ 234 (345)
..+...++++. .++|||||||.|+++-.++++.|. .++++|- +...-+.+ ++.+.+ ...+.+| .
T Consensus 105 ~rl~p~l~~L~-gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lgvE~Lp~~~ 181 (315)
T PF08003_consen 105 DRLLPHLPDLK-GKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LGVEDLPNLG 181 (315)
T ss_pred HHHHhhhCCcC-CCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcC-cchhhccccC
Confidence 34555554243 479999999999999999998765 6899996 22222111 222322 2223344 3
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCC-CccCCH
Q 044482 235 G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQ-AKGRTA 312 (345)
Q Consensus 235 ~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~rt~ 312 (345)
. |+|++-.||+|..++ ...|+++++.|+| ||.+++- ..+.+.+...-......+.. + +| -...|.
T Consensus 182 ~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~---gGeLvLE-Tlvi~g~~~~~L~P~~rYa~------m-~nv~FiPs~ 248 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSP--LDHLKQLKDSLRP---GGELVLE-TLVIDGDENTVLVPEDRYAK------M-RNVWFIPSV 248 (315)
T ss_pred CcCEEEEeeehhccCCH--HHHHHHHHHhhCC---CCEEEEE-EeeecCCCceEEccCCcccC------C-CceEEeCCH
Confidence 3 999999999999988 5889999999999 9988877 66666543221111001110 0 01 124589
Q ss_pred HHHHHHHHHCCCCceEEEecC
Q 044482 313 GEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 313 ~e~~~ll~~aGf~~~~~~~~~ 333 (345)
..++.||+++||+.+++....
T Consensus 249 ~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 249 AALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred HHHHHHHHHcCCceEEEecCc
Confidence 999999999999999987663
No 54
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.30 E-value=2.1e-12 Score=111.88 Aligned_cols=139 Identities=13% Similarity=0.060 Sum_probs=100.1
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCC--CCCEEEeccccccC
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVP--SGQAIFTKSVLLNW 247 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p--~~D~i~~~~vlh~~ 247 (345)
..+|||||||.|.++..+++.. .+++++|+ ++.|+.|+ .+++.+....+ ... +-|+|+|..||+|.
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 4789999999999999999986 88999999 77888777 44566666555 222 22999999999999
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccch-hhhhhcCCC-----ccCCHHHHHHHHHH
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDI-VMYDLFPQA-----KGRTAGEFKALAMA 321 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~-----~~rt~~e~~~ll~~ 321 (345)
+|++ .+++.|.+.+|| ||.+++. ..... ...+....+.. ..+-+.+.| +...++|...++..
T Consensus 138 ~dp~--~~~~~c~~lvkP---~G~lf~S-Tinrt------~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~ 205 (243)
T COG2227 138 PDPE--SFLRACAKLVKP---GGILFLS-TINRT------LKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLG 205 (243)
T ss_pred CCHH--HHHHHHHHHcCC---CcEEEEe-ccccC------HHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhccc
Confidence 9996 589999999999 9988888 44321 11111111111 111122233 45678899999999
Q ss_pred CCCCceEEEec
Q 044482 322 AGFGTIKVICR 332 (345)
Q Consensus 322 aGf~~~~~~~~ 332 (345)
+|+++.....+
T Consensus 206 ~~~~~~~~~g~ 216 (243)
T COG2227 206 ANLKIIDRKGL 216 (243)
T ss_pred CCceEEeecce
Confidence 99998877554
No 55
>PLN03075 nicotianamine synthase; Provisional
Probab=99.30 E-value=1.3e-11 Score=111.88 Aligned_cols=94 Identities=18% Similarity=0.151 Sum_probs=77.1
Q ss_pred ccccceEEecCCccHHHHH--HHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCCC--CC-CEEEe
Q 044482 178 KELKKLVDVASCLGANMSL--IVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNVP--SG-QAIFT 240 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~--l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~p--~~-D~i~~ 240 (345)
..+++|+|||||.|-++.. +++.+|+.+++++|. |++++.|+ |++|..+|..+..+ .. |+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3668999999997744333 335689999999999 77776554 79999999988433 33 99999
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. ++|+|+.++..++|+++++.|+| ||.+++-
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr 232 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAP---GALLMLR 232 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCC---CcEEEEe
Confidence 9 99999877778999999999999 9988877
No 56
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.29 E-value=1.2e-10 Score=108.90 Aligned_cols=103 Identities=14% Similarity=0.193 Sum_probs=83.3
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCCC-CEE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPSG-QAI 238 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~~-D~i 238 (345)
.+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++ ..+++.+|.++..+.. |+|
T Consensus 187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI 265 (342)
T PRK09489 187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI 265 (342)
T ss_pred HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence 3445554 23345899999999999999999999999999999 67787765 4567888888755444 999
Q ss_pred EeccccccC---ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 239 FTKSVLLNW---SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 239 ~~~~vlh~~---~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+++-.+|+. +.+...++++++.+.|+| ||+++|+
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp---gG~L~iV 302 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNS---GGELRIV 302 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCc---CCEEEEE
Confidence 999999863 345567899999999999 9999988
No 57
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.28 E-value=2.4e-11 Score=114.42 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=85.1
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------CceEEeccCCcCCCC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------CVEHVEGDMFVNVPS 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~~~p~ 234 (345)
+-+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++ +++++.+|.++.++.
T Consensus 218 rllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~ 296 (378)
T PRK15001 218 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 296 (378)
T ss_pred HHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCC
Confidence 34667776 44446999999999999999999999999999999 56676654 468889999886553
Q ss_pred -C-CEEEeccccc---cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 -G-QAIFTKSVLL---NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 -~-D~i~~~~vlh---~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|+++--+| .++++.+.++++.+++.|+| ||+++|+
T Consensus 297 ~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV 339 (378)
T PRK15001 297 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIV 339 (378)
T ss_pred CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEE
Confidence 3 9999985554 35667778999999999999 9999998
No 58
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.28 E-value=6.7e-12 Score=107.62 Aligned_cols=137 Identities=17% Similarity=0.136 Sum_probs=95.0
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------C-ceEEeccCCcCCCC-C--CEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------C-VEHVEGDMFVNVPS-G--QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------r-i~~~~gd~~~~~p~-~--D~i~~~~vlh 245 (345)
...+.||.|+|.|..+..++-.+= -++-++|. +..++.|+ + .++...-+.+-.|+ + |+||+.|++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 357899999999999998765431 24666665 66666665 2 34444444343342 3 9999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCC
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~ 325 (345)
|++|++.+..|++|+++|+| +|.|+|- |.+..... ..+| -.+++-.|+.+.|++++++||++
T Consensus 134 hLTD~dlv~fL~RCk~~L~~---~G~IvvK-EN~~~~~~---------~~~D-----~~DsSvTRs~~~~~~lF~~AGl~ 195 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKP---NGVIVVK-ENVSSSGF---------DEFD-----EEDSSVTRSDEHFRELFKQAGLR 195 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEE---EEEEEEE-EEEESSSE---------EEEE-----TTTTEEEEEHHHHHHHHHHCT-E
T ss_pred cCCHHHHHHHHHHHHHhCcC---CcEEEEE-ecCCCCCC---------cccC-----CccCeeecCHHHHHHHHHHcCCE
Confidence 99999999999999999999 9999999 88765431 1223 12356679999999999999999
Q ss_pred ceEEEecCC
Q 044482 326 TIKVICRSY 334 (345)
Q Consensus 326 ~~~~~~~~~ 334 (345)
+++.....+
T Consensus 196 ~v~~~~Q~~ 204 (218)
T PF05891_consen 196 LVKEEKQKG 204 (218)
T ss_dssp EEEEEE-TT
T ss_pred EEEeccccC
Confidence 998766543
No 59
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.27 E-value=1.4e-10 Score=99.10 Aligned_cols=159 Identities=19% Similarity=0.122 Sum_probs=116.7
Q ss_pred cccc-ceEEecCCccHHHHHHHHHCCCCeEEEeehh-hH---hh----hCC--Cc-eEEeccCCcC-CC---------CC
Q 044482 178 KELK-KLVDVASCLGANMSLIVNTYPQITGINFDLP-YV---IK----NAP--CV-EHVEGDMFVN-VP---------SG 235 (345)
Q Consensus 178 ~~~~-~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp-~~---i~----~a~--ri-~~~~gd~~~~-~p---------~~ 235 (345)
.... +||+||+|+|.-+..+++++|+++..--|.. .. |+ .+. ++ .-+.-|+.++ .| ..
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 3444 5999999999999999999999987666652 21 21 222 21 1223455442 22 13
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|+|++.|++|..+-+.+..+++.+.+.|+| ||.+++- ..+..+..-.+ .....+|-..-...+....|..++
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~Y-GPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~ 175 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLY-GPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIED 175 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEe-CCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHH
Confidence 999999999999999999999999999999 9999999 77765432111 122445655554445667899999
Q ss_pred HHHHHHHCCCCceEEEecCCceEEEEEEc
Q 044482 315 FKALAMAAGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 343 (345)
+.++.+++||+..+.+.+|.+.-+++++|
T Consensus 176 v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 176 VEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 99999999999999999998766666665
No 60
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.27 E-value=5.3e-11 Score=109.81 Aligned_cols=134 Identities=12% Similarity=0.129 Sum_probs=90.1
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------CceEEeccCCcCCCCC-CEEEeccc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------CVEHVEGDMFVNVPSG-QAIFTKSV 243 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~~~p~~-D~i~~~~v 243 (345)
..+|||||||+|.++..++++ +.+++++|+ +.+++.++ +++|..+|+.+ +... |+|++..+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-l~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-LSGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-cCCCcCEEEEcCE
Confidence 469999999999999999986 468999999 78887665 24677777643 2333 99999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCC------ccCCHHHHHH
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA------KGRTAGEFKA 317 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~rt~~e~~~ 317 (345)
+||++++....+++++.+ +.+ + +++|. .. +... .. ..+...- ...++. ...+.+++++
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~---g-~liIs-~~--p~~~---~~----~~l~~~g-~~~~g~~~~~r~y~~s~eel~~ 285 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAE---K-RLIIS-FA--PKTL---YY----DILKRIG-ELFPGPSKATRAYLHAEADVER 285 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcC---C-EEEEE-eC--Ccch---HH----HHHHHHH-hhcCCCCcCceeeeCCHHHHHH
Confidence 999999887788888875 455 4 44444 21 1110 00 0001000 011111 1237999999
Q ss_pred HHHHCCCCceEEEec
Q 044482 318 LAMAAGFGTIKVICR 332 (345)
Q Consensus 318 ll~~aGf~~~~~~~~ 332 (345)
+|+++||++.+..-.
T Consensus 286 lL~~AGf~v~~~~~~ 300 (315)
T PLN02585 286 ALKKAGWKVARREMT 300 (315)
T ss_pred HHHHCCCEEEEEEEe
Confidence 999999998765433
No 61
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.27 E-value=2.5e-10 Score=97.67 Aligned_cols=125 Identities=18% Similarity=0.105 Sum_probs=93.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC-CEEEecccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG-QAIFTKSVLLN 246 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~-D~i~~~~vlh~ 246 (345)
...+|||||||+|..+..++++.|+.+++++|. +.+++.++ +++++.+|+.+ +.... |+|++..+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc---
Confidence 367999999999999999999999999999999 77877665 58999999877 33223 99998753
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCc
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGT 326 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~ 326 (345)
. ....+++++++.|+| ||++++. +.. . ...++.++.++.|+.+
T Consensus 122 -~--~~~~~l~~~~~~Lkp---GG~lv~~-~~~---~---------------------------~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 122 -A--SLSDLVELCLPLLKP---GGRFLAL-KGR---D---------------------------PEEEIAELPKALGGKV 164 (187)
T ss_pred -c--CHHHHHHHHHHhcCC---CeEEEEE-eCC---C---------------------------hHHHHHHHHHhcCceE
Confidence 2 235789999999999 9999988 321 0 1344567777779987
Q ss_pred eEEEec--C---CceEEEEEEc
Q 044482 327 IKVICR--S---YCYWVIEFYK 343 (345)
Q Consensus 327 ~~~~~~--~---~~~~vi~~~k 343 (345)
.++... + +...+...+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 165 EEVIELTLPGLDGERHLVIIRK 186 (187)
T ss_pred eeeEEEecCCCCCcEEEEEEec
Confidence 766443 3 3445555555
No 62
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.26 E-value=1.3e-10 Score=99.16 Aligned_cols=87 Identities=17% Similarity=0.087 Sum_probs=70.6
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC-CEEEeccccccC
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG-QAIFTKSVLLNW 247 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~-D~i~~~~vlh~~ 247 (345)
..+|||||||+|.++..++..+|+.+++++|. +.+++.++ +++++.+|+.+ +.... |+|++.. +|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 57999999999999999999999999999999 66665443 68999999877 22223 9998876 5443
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..+++.+++.|+| ||++++.
T Consensus 122 -----~~~~~~~~~~Lkp---gG~lvi~ 141 (181)
T TIGR00138 122 -----NVLLELTLNLLKV---GGYFLAY 141 (181)
T ss_pred -----HHHHHHHHHhcCC---CCEEEEE
Confidence 3578888999999 9998887
No 63
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.25 E-value=1.2e-11 Score=107.95 Aligned_cols=137 Identities=17% Similarity=0.098 Sum_probs=100.9
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------------CceEEeccCCcCCCCCCEEEecccc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------------CVEHVEGDMFVNVPSGQAIFTKSVL 244 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------------ri~~~~gd~~~~~p~~D~i~~~~vl 244 (345)
.+|||||||+|.++..|++.. .+++++|+ +.+++.|+ |+++...|.....+.-|+|+++-++
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevl 168 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVL 168 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHH
Confidence 679999999999999999885 67999999 88888776 4777777766544446999999999
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhh-hhccchhhhhhcCC-----CccCCHHHHHHH
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRN-ILTLDIVMYDLFPQ-----AKGRTAGEFKAL 318 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~-----~~~rt~~e~~~l 318 (345)
+|..|. ..+++.+.+.|+| +|+++|. +....-. .+. ...++-+.+-+.|- .+..+.++...+
T Consensus 169 eHV~dp--~~~l~~l~~~lkP---~G~lfit-tinrt~l------S~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~ 236 (282)
T KOG1270|consen 169 EHVKDP--QEFLNCLSALLKP---NGRLFIT-TINRTIL------SFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSI 236 (282)
T ss_pred HHHhCH--HHHHHHHHHHhCC---CCceEee-ehhhhHH------HhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHH
Confidence 999888 4899999999999 9999999 4422111 011 11111112211122 245689999999
Q ss_pred HHHCCCCceEEEe
Q 044482 319 AMAAGFGTIKVIC 331 (345)
Q Consensus 319 l~~aGf~~~~~~~ 331 (345)
++.+|+.+..+..
T Consensus 237 l~~~~~~v~~v~G 249 (282)
T KOG1270|consen 237 LNANGAQVNDVVG 249 (282)
T ss_pred HHhcCcchhhhhc
Confidence 9999998877643
No 64
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.24 E-value=1e-10 Score=104.09 Aligned_cols=140 Identities=13% Similarity=0.054 Sum_probs=95.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-C-CC-CC-CEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-N-VP-SG-QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~-~p-~~-D~i~~~~vlh 245 (345)
...+|||||||+|.++..+++. ..+++++|. +.+++.++ ++++..+|+.+ + .+ .. |+|++.++++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 4578999999999999998875 467999998 66666554 46777777765 2 22 23 9999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcC-----CCccCCHHHHHHHHH
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFP-----QAKGRTAGEFKALAM 320 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~~rt~~e~~~ll~ 320 (345)
+.++. ..+|+++.+.|+| ||++++. ..-.. .... .......-......+ .....+.++|.++++
T Consensus 126 ~~~~~--~~~l~~~~~~L~~---gG~l~v~-~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 194 (233)
T PRK05134 126 HVPDP--ASFVRACAKLVKP---GGLVFFS-TLNRN----LKSY-LLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLR 194 (233)
T ss_pred ccCCH--HHHHHHHHHHcCC---CcEEEEE-ecCCC----hHHH-HHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHH
Confidence 98876 4789999999999 9998887 54211 1000 000000000000000 123458899999999
Q ss_pred HCCCCceEEEe
Q 044482 321 AAGFGTIKVIC 331 (345)
Q Consensus 321 ~aGf~~~~~~~ 331 (345)
++||++++...
T Consensus 195 ~~Gf~~v~~~~ 205 (233)
T PRK05134 195 QAGLEVQDITG 205 (233)
T ss_pred HCCCeEeeeee
Confidence 99999987753
No 65
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.24 E-value=1.2e-10 Score=100.64 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=93.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCc---CCCCC--CEEEeccccccCChh
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFV---NVPSG--QAIFTKSVLLNWSDE 250 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~---~~p~~--D~i~~~~vlh~~~d~ 250 (345)
...+|||||||+|.++..+++.. ..+++++|+ +++++.++ +++++.+|+.+ +++++ |+|++++++||+++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~ 91 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP 91 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH
Confidence 45689999999999999888663 567899998 77777765 78999999865 24433 999999999999876
Q ss_pred HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhc----------cchhhhhhcCCCccCCHHHHHHHHH
Q 044482 251 QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILT----------LDIVMYDLFPQAKGRTAGEFKALAM 320 (345)
Q Consensus 251 ~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~----------~d~~~~~~~~~~~~rt~~e~~~ll~ 320 (345)
. .+|+++.+.+++ +++. - +.... ........ +....... +..+..+.+++.++++
T Consensus 92 ~--~~l~e~~r~~~~------~ii~-~---p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~ll~ 156 (194)
T TIGR02081 92 E--EILDEMLRVGRH------AIVS-F---PNFGY--WRVRWSILTKGRMPVTGELPYDWYNT-PNIHFCTIADFEDLCG 156 (194)
T ss_pred H--HHHHHHHHhCCe------EEEE-c---CChhH--HHHHHHHHhCCccccCCCCCccccCC-CCcccCcHHHHHHHHH
Confidence 4 678888876554 3333 1 11000 00000000 00000001 1234678999999999
Q ss_pred HCCCCceEEEecC
Q 044482 321 AAGFGTIKVICRS 333 (345)
Q Consensus 321 ~aGf~~~~~~~~~ 333 (345)
++||++++....+
T Consensus 157 ~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 157 ELNLRILDRAAFD 169 (194)
T ss_pred HCCCEEEEEEEec
Confidence 9999999876664
No 66
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.20 E-value=4.8e-10 Score=98.09 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=94.9
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC-------------------C--CceEEeccCCcCCC--
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA-------------------P--CVEHVEGDMFVNVP-- 233 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a-------------------~--ri~~~~gd~~~~~p-- 233 (345)
....+|||+|||.|..+..|+++ +.+++++|+ |..++.+ + +++++.+|+++..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45579999999999999999976 668999999 6656642 1 58899999998322
Q ss_pred -CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCC
Q 044482 234 -SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRT 311 (345)
Q Consensus 234 -~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt 311 (345)
.. |+|+-+.++|+++.+...+.++++.++|+| ||++++. ....++.... . -....+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~-~~~~~~~~~~-----------------g-pp~~~~ 168 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLI-TLDYDQSEMA-----------------G-PPFSVS 168 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEE-EEEcCCCCCC-----------------C-cCCCCC
Confidence 22 999999999999999999999999999999 9987776 4433221100 0 011356
Q ss_pred HHHHHHHHHHCCCCceEEE
Q 044482 312 AGEFKALAMAAGFGTIKVI 330 (345)
Q Consensus 312 ~~e~~~ll~~aGf~~~~~~ 330 (345)
.+|++++++. +|.+..+.
T Consensus 169 ~~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 169 PAEVEALYGG-HYEIELLE 186 (213)
T ss_pred HHHHHHHhcC-CceEEEEe
Confidence 8899998864 45555443
No 67
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.20 E-value=2.1e-10 Score=101.28 Aligned_cols=140 Identities=14% Similarity=0.045 Sum_probs=96.7
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCC--CC-CEEEecccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVP--SG-QAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p--~~-D~i~~~~vl 244 (345)
...+|||+|||+|.++..+++..+ +++++|+ +.+++.++ ++++..+|+.+ +.+ .. |+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 357899999999999999988654 5899998 66766554 37778888765 322 23 999999999
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchh-hhhhcC-----CCccCCHHHHHHH
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIV-MYDLFP-----QAKGRTAGEFKAL 318 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~-~~~~~~-----~~~~rt~~e~~~l 318 (345)
|+..+.+ .+|+++++.|+| ||.+++. +.-.+.. . . .....+.. .....+ .....+..++.++
T Consensus 123 ~~~~~~~--~~l~~~~~~L~~---gG~l~i~-~~~~~~~--~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 190 (224)
T TIGR01983 123 EHVPDPQ--AFIRACAQLLKP---GGILFFS-TINRTPK--S-Y---LLAIVGAEYILRIVPKGTHDWEKFIKPSELTSW 190 (224)
T ss_pred HhCCCHH--HHHHHHHHhcCC---CcEEEEE-ecCCCch--H-H---HHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHH
Confidence 9998774 789999999999 9998887 5421100 0 0 00000000 000000 1123478899999
Q ss_pred HHHCCCCceEEEec
Q 044482 319 AMAAGFGTIKVICR 332 (345)
Q Consensus 319 l~~aGf~~~~~~~~ 332 (345)
++++||+++++...
T Consensus 191 l~~~G~~i~~~~~~ 204 (224)
T TIGR01983 191 LESAGLRVKDVKGL 204 (224)
T ss_pred HHHcCCeeeeeeeE
Confidence 99999999887643
No 68
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.19 E-value=1.7e-10 Score=91.80 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=76.8
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcC---CCCC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVN---VPSG 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~---~p~~ 235 (345)
.+++.+. .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++ +++++.+|+... .++.
T Consensus 10 ~~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 10 LTLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 3455555 55567999999999999999999999999999999 67776554 688888887642 2233
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++....+ ...++++++++.|+| ||++++.
T Consensus 89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG-----LLQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred CCEEEECCcch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence 9999876543 335899999999999 9998875
No 69
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.18 E-value=4.6e-10 Score=100.82 Aligned_cols=119 Identities=20% Similarity=0.257 Sum_probs=91.4
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCCC--CEEEeccc----
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPSG--QAIFTKSV---- 243 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~~--D~i~~~~v---- 243 (345)
..+|||+|||+|.++..+++.+|+.+++++|. +.+++.++ +++++.+|++++++.+ |+|+++--
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~ 167 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIPE 167 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCch
Confidence 45899999999999999999999999999998 77777665 5899999998866533 99988432
Q ss_pred --cccCChhH------------------HHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhh
Q 044482 244 --LLNWSDEQ------------------CLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDL 303 (345)
Q Consensus 244 --lh~~~d~~------------------~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~ 303 (345)
+|.+..+. ...+++++.+.|+| ||++++. -. .
T Consensus 168 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~-~~------------------------~ 219 (251)
T TIGR03534 168 ADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLE-IG------------------------Y 219 (251)
T ss_pred hhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEE-EC------------------------c
Confidence 22232221 23789999999999 9988776 10 0
Q ss_pred cCCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 304 FPQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 304 ~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
...++++++++++||+.+++...
T Consensus 220 ------~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 220 ------DQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred ------cHHHHHHHHHHhCCCCceEEEeC
Confidence 12466889999999998887654
No 70
>PTZ00146 fibrillarin; Provisional
Probab=99.17 E-value=1.1e-09 Score=98.89 Aligned_cols=139 Identities=12% Similarity=0.017 Sum_probs=95.7
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hh----HhhhCC---CceEEeccCCcCC----C-CC-CEEEec
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PY----VIKNAP---CVEHVEGDMFVNV----P-SG-QAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~----~i~~a~---ri~~~~gd~~~~~----p-~~-D~i~~~ 241 (345)
+....+|||+|||+|.++..+++.. |.-+++.+|+ +. +++.++ +|.++.+|+..+. + +. |+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5667899999999999999999986 4568999998 43 556654 7999999986542 2 23 999887
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
.. ..++...++.++++.||| ||+++|. ......+..+ ...++-.+|. ++|++
T Consensus 210 va----~pdq~~il~~na~r~LKp---GG~~vI~-ika~~id~g~-------------------~pe~~f~~ev-~~L~~ 261 (293)
T PTZ00146 210 VA----QPDQARIVALNAQYFLKN---GGHFIIS-IKANCIDSTA-------------------KPEVVFASEV-QKLKK 261 (293)
T ss_pred CC----CcchHHHHHHHHHHhccC---CCEEEEE-EeccccccCC-------------------CHHHHHHHHH-HHHHH
Confidence 64 123445667789999999 9999985 2211111110 0011112444 88999
Q ss_pred CCCCceEEEecCC---ceEEEEEEc
Q 044482 322 AGFGTIKVICRSY---CYWVIEFYK 343 (345)
Q Consensus 322 aGf~~~~~~~~~~---~~~vi~~~k 343 (345)
+||+.++...+.. .+.++.++.
T Consensus 262 ~GF~~~e~v~L~Py~~~h~~v~~~~ 286 (293)
T PTZ00146 262 EGLKPKEQLTLEPFERDHAVVIGVY 286 (293)
T ss_pred cCCceEEEEecCCccCCcEEEEEEE
Confidence 9999999888853 356666553
No 71
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.16 E-value=3.9e-10 Score=95.02 Aligned_cols=142 Identities=17% Similarity=0.209 Sum_probs=98.4
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hh-HhhhCC-CceEEeccCCc---CCCCC--CEEEeccccccCCh
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PY-VIKNAP-CVEHVEGDMFV---NVPSG--QAIFTKSVLLNWSD 249 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~-~i~~a~-ri~~~~gd~~~---~~p~~--D~i~~~~vlh~~~d 249 (345)
++..+|||+|||.|.++..|.+. .++++.++|+ ++ +.+..+ .++++++|+.+ .+|+. |.|+++..|.+...
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~ 90 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR 90 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH
Confidence 35689999999999999888875 5888999988 44 444433 89999999987 35643 99999999999987
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhh---------hhhcCCCccCCHHHHHHHHH
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVM---------YDLFPQAKGRTAGEFKALAM 320 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~---------~~~~~~~~~rt~~e~~~ll~ 320 (345)
++ ++|+++.|+ |.+.+|. .|+-. .+..+....+.-.| +--+||-+..|..+++++.+
T Consensus 91 P~--~vL~EmlRV------gr~~IVs----FPNFg--~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 91 PD--EVLEEMLRV------GRRAIVS----FPNFG--HWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCR 156 (193)
T ss_pred HH--HHHHHHHHh------cCeEEEE----ecChH--HHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHH
Confidence 75 779988777 5455555 12110 01001000000000 11134556779999999999
Q ss_pred HCCCCceEEEecCC
Q 044482 321 AAGFGTIKVICRSY 334 (345)
Q Consensus 321 ~aGf~~~~~~~~~~ 334 (345)
+.|+++.+...+..
T Consensus 157 ~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 157 ELGIRIEERVFLDG 170 (193)
T ss_pred HCCCEEEEEEEEcC
Confidence 99999998877754
No 72
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.16 E-value=1.5e-10 Score=97.90 Aligned_cols=102 Identities=19% Similarity=0.237 Sum_probs=80.9
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-CC-CE
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-SG-QA 237 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-~~-D~ 237 (345)
+++.++ .....+|||+|||+|..+..+++++|+.+++.+|. +..++.++ .++++..|.++..+ .. |+
T Consensus 23 L~~~l~-~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~ 101 (170)
T PF05175_consen 23 LLDNLP-KHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDL 101 (170)
T ss_dssp HHHHHH-HHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEE
T ss_pred HHHHHh-hccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeE
Confidence 344444 33557899999999999999999999999999999 77777665 38899999999776 34 99
Q ss_pred EEeccccccCCh---hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLLNWSD---EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh~~~d---~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+++--+|.-.+ +-..++++++.+.|+| ||+++++
T Consensus 102 Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv 139 (170)
T PF05175_consen 102 IVSNPPFHAGGDDGLDLLRDFIEQARRYLKP---GGRLFLV 139 (170)
T ss_dssp EEE---SBTTSHCHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred EEEccchhcccccchhhHHHHHHHHHHhccC---CCEEEEE
Confidence 999987776554 3457899999999999 9999776
No 73
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.14 E-value=7e-10 Score=93.43 Aligned_cols=170 Identities=16% Similarity=0.052 Sum_probs=109.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------Cce
Q 044482 153 NLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVE 222 (345)
Q Consensus 153 ~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~ 222 (345)
..|++-|+.+.+.....+-...- -+.-..||+||||+|..-... .--|..+++++|. |.|-+.+. .+.
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~g-k~~K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~ 128 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLG-KSGKGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVE 128 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhc-ccCccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccCcceE
Confidence 45666666665443333332221 233457899999999876331 1225678999998 66644332 566
Q ss_pred -EEeccCCc-C-CCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccc
Q 044482 223 -HVEGDMFV-N-VPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLD 297 (345)
Q Consensus 223 -~~~gd~~~-~-~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d 297 (345)
|+.++..+ + ++++ |+|++..+|.-..|. ++.|+++++.|+| ||+++.+ |.+..+...-.. -.+...+
T Consensus 129 ~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~--~k~L~e~~rlLRp---gG~iifi-EHva~~y~~~n~--i~q~v~e 200 (252)
T KOG4300|consen 129 RFVVADGENLPQLADGSYDTVVCTLVLCSVEDP--VKQLNEVRRLLRP---GGRIIFI-EHVAGEYGFWNR--ILQQVAE 200 (252)
T ss_pred EEEeechhcCcccccCCeeeEEEEEEEeccCCH--HHHHHHHHHhcCC---CcEEEEE-ecccccchHHHH--HHHHHhc
Confidence 88888776 4 4555 999999999655554 7999999999999 9999999 998776532110 0111122
Q ss_pred hhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCC
Q 044482 298 IVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSY 334 (345)
Q Consensus 298 ~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~ 334 (345)
-..-..+ .|-..|.+-| +.|++|-|+..+......
T Consensus 201 p~~~~~~-dGC~ltrd~~-e~Leda~f~~~~~kr~~~ 235 (252)
T KOG4300|consen 201 PLWHLES-DGCVLTRDTG-ELLEDAEFSIDSCKRFNF 235 (252)
T ss_pred hhhheec-cceEEehhHH-HHhhhcccccchhhcccC
Confidence 1111122 4556666655 678899999887766653
No 74
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.14 E-value=1.2e-10 Score=98.31 Aligned_cols=132 Identities=16% Similarity=0.173 Sum_probs=94.5
Q ss_pred hccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCcCCCCC--CEEEecc
Q 044482 173 IYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFVNVPSG--QAIFTKS 242 (345)
Q Consensus 173 ~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~~~p~~--D~i~~~~ 242 (345)
.++ -....+++|+|||.|.++..|+.++. +.+++|. +..++.|+ +|+++.+|+-+..|.+ |+|+++-
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 455 45667899999999999999999973 6899998 77788776 7999999998877755 9999999
Q ss_pred ccccCCh-hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 243 VLLNWSD-EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 243 vlh~~~d-~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
|+|++++ ++...+++++.++|+| ||.+++. ..- |-.. .. -|.....+.+.++|.+
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~p---gG~LV~g-~~r-----------------d~~c--~~-wgh~~ga~tv~~~~~~ 170 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAP---GGHLVFG-HAR-----------------DANC--RR-WGHAAGAETVLEMLQE 170 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEE---EEEEEEE-EE------------------HHHH--HH-TT-S--HHHHHHHHHH
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCC---CCEEEEE-Eec-----------------CCcc--cc-cCcccchHHHHHHHHH
Confidence 9999986 6788899999999999 9999998 431 1000 11 2344467778888888
Q ss_pred CCCCceEEEec
Q 044482 322 AGFGTIKVICR 332 (345)
Q Consensus 322 aGf~~~~~~~~ 332 (345)
. |..++...+
T Consensus 171 ~-~~~~~~~~~ 180 (201)
T PF05401_consen 171 H-LTEVERVEC 180 (201)
T ss_dssp H-SEEEEEEEE
T ss_pred H-hhheeEEEE
Confidence 7 555554444
No 75
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.14 E-value=1.5e-10 Score=100.62 Aligned_cols=94 Identities=15% Similarity=0.095 Sum_probs=74.3
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccC-Cc-C--CCCC--CEEEecc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDM-FV-N--VPSG--QAIFTKS 242 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~-~~-~--~p~~--D~i~~~~ 242 (345)
+..+|||||||+|.++..+++.+|+.+++++|. +++++.++ +++++.+|+ .. + ++++ |+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 457899999999999999999999999999999 77877554 689999998 33 3 4443 9998865
Q ss_pred ccccCC------hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VLLNWS------DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh~~~------d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..+... ......+|+++++.|+| ||.+++.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~ 155 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFA 155 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEE
Confidence 442211 11235789999999999 9999998
No 76
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=2.4e-09 Score=96.38 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=85.5
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCCC-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPSG-Q 236 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~~-D 236 (345)
+-+++.++ .....+|+|+|||.|.++..+++.+|+.+++.+|. ...++.++ +..+...|.+++.... |
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd 226 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD 226 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence 45678887 55555999999999999999999999999999999 45566666 2357888988876654 9
Q ss_pred EEEecccccc---CChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLLN---WSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh~---~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.|+++=-+|. ..+.-..++++..++.|++ ||.|.|+
T Consensus 227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iV 265 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIV 265 (300)
T ss_pred EEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEE
Confidence 9999988874 3444556899999999999 9999999
No 77
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.12 E-value=2.4e-10 Score=97.39 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=81.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-Q 236 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D 236 (345)
..+++.++ .-...++||+|||.|..+..|+++ +..++.+|. +..++.++ .|+....|+.+ .++.. |
T Consensus 20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 35666666 556789999999999999999998 567999998 44455433 68888999887 55555 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
+|++..|+++++.+....+++++.++++| ||.+++. ..+
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~-~~~ 135 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIV-TFM 135 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEE-EEB
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEE-Eec
Confidence 99999999999999999999999999999 9988887 554
No 78
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.10 E-value=3.7e-09 Score=94.06 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=108.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCC--CeEEEeeh-hhHhhhCC---------Cc-eEEeccCCcC--CC---CC-CEEE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQ--ITGINFDL-PYVIKNAP---------CV-EHVEGDMFVN--VP---SG-QAIF 239 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~--~~~~~~Dl-p~~i~~a~---------ri-~~~~gd~~~~--~p---~~-D~i~ 239 (345)
..-+||||.||+|.+....++.+|. .++.+.|. |.-++..+ .+ +|..+|.|+. +. .. ++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 4578999999999999999999998 78999998 65566554 44 9999999983 22 23 9999
Q ss_pred eccccccCChhHHH-HHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCC-----ccCCHH
Q 044482 240 TKSVLLNWSDEQCL-KILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA-----KGRTAG 313 (345)
Q Consensus 240 ~~~vlh~~~d~~~~-~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----~~rt~~ 313 (345)
.+.+...|+|.+.+ +.|+.+++++.| ||.++-. -.-..+.. .++.. .++.+.+| +.||..
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyT-gQPwHPQl---------e~IAr-~LtsHr~g~~WvMRrRsq~ 280 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYT-GQPWHPQL---------EMIAR-VLTSHRDGKAWVMRRRSQA 280 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEc-CCCCCcch---------HHHHH-HHhcccCCCceEEEecCHH
Confidence 99999999997744 479999999999 9977776 22111110 01111 11111133 368999
Q ss_pred HHHHHHHHCCCCceEEEecC-CceEEEEEEc
Q 044482 314 EFKALAMAAGFGTIKVICRS-YCYWVIEFYK 343 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 343 (345)
|..+|+++|||+.++..--. +-.+|-.|+|
T Consensus 281 EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 281 EMDQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHHHHcCCchhhheeccCCceEEEeecC
Confidence 99999999999877654333 4456666653
No 79
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.10 E-value=5.4e-10 Score=96.41 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=106.3
Q ss_pred cceEEecCCccHHHHHHHHHCCC--CeEEEeeh-hhHhhhCC--------CceEEeccCCc-C----CCCC--CEEEecc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQ--ITGINFDL-PYVIKNAP--------CVEHVEGDMFV-N----VPSG--QAIFTKS 242 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~--~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~----~p~~--D~i~~~~ 242 (345)
.+||+||||.|.+.-.+++.+|+ +++..+|. |..++..+ |+.-...|+.. . ...+ |++.+..
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 48999999999999999999988 99999998 77766554 66666666655 2 2234 9999999
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCC--ccCCHHHHHHHHH
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA--KGRTAGEFKALAM 320 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~rt~~e~~~ll~ 320 (345)
+|-..+++.....+.++++.||| ||.|+.. |.-..+-..-.. .....++-...+..+|. ..++.+++.+|++
T Consensus 153 vLSAi~pek~~~a~~nl~~llKP---GG~llfr-DYg~~DlaqlRF--~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~ 226 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKP---GGSLLFR-DYGRYDLAQLRF--KKGQCISENFYVRGDGTRAYFFTEEELDELFT 226 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCC---CcEEEEe-ecccchHHHHhc--cCCceeecceEEccCCceeeeccHHHHHHHHH
Confidence 99999999999999999999999 9999999 875543211000 01122333333332222 2469999999999
Q ss_pred HCCCCceEE
Q 044482 321 AAGFGTIKV 329 (345)
Q Consensus 321 ~aGf~~~~~ 329 (345)
+|||..++.
T Consensus 227 ~agf~~~~~ 235 (264)
T KOG2361|consen 227 KAGFEEVQL 235 (264)
T ss_pred hcccchhcc
Confidence 999987654
No 80
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.09 E-value=2.4e-09 Score=94.05 Aligned_cols=129 Identities=13% Similarity=0.141 Sum_probs=94.9
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC---------------------CCceEEeccCCcCCC-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA---------------------PCVEHVEGDMFVNVP- 233 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a---------------------~ri~~~~gd~~~~~p- 233 (345)
.....+|||+|||.|..+..|+++ +.+++++|+ |..++.+ .+|++..+|+++..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 344579999999999999999975 678999999 5555532 168889999998433
Q ss_pred --CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCC-CCchhhhhhhccchhhhhhcCCCcc
Q 044482 234 --SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESP-EFSSINRNILTLDIVMYDLFPQAKG 309 (345)
Q Consensus 234 --~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~ 309 (345)
.. |+|+-+.++|+++.+...+.++++.++|+| ||+++++ ....++.. ..| ...
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~-~~~~~~~~~~gP-------------------p~~ 169 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLV-TLDYPQEELAGP-------------------PFS 169 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEE-EEEeCCccCCCC-------------------CCC
Confidence 12 999999999999999999999999999999 9976655 33332221 111 113
Q ss_pred CCHHHHHHHHHHCCCCceEEEe
Q 044482 310 RTAGEFKALAMAAGFGTIKVIC 331 (345)
Q Consensus 310 rt~~e~~~ll~~aGf~~~~~~~ 331 (345)
.+.+|++++++. +|.+.....
T Consensus 170 ~~~~el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 170 VSDEEVEALYAG-CFEIELLER 190 (218)
T ss_pred CCHHHHHHHhcC-CceEEEeee
Confidence 578999999964 266555443
No 81
>PRK14968 putative methyltransferase; Provisional
Probab=99.09 E-value=3e-09 Score=91.08 Aligned_cols=121 Identities=20% Similarity=0.228 Sum_probs=90.2
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------C-ceEEeccCCcCCCC-C-CEEEeccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------C-VEHVEGDMFVNVPS-G-QAIFTKSV 243 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------r-i~~~~gd~~~~~p~-~-D~i~~~~v 243 (345)
.+..+|||+|||+|.++..++++ ..+++++|+ |.+++.++ + +.++.+|+.+++++ . |+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 34568999999999999999988 578999999 77877663 2 88999999886664 3 99988654
Q ss_pred cccCC-------------------hhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhc
Q 044482 244 LLNWS-------------------DEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLF 304 (345)
Q Consensus 244 lh~~~-------------------d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~ 304 (345)
+.... ......+++++.+.|+| ||++++. .. . .
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~-~~---~--------------------~- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLL-QS---S--------------------L- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEE-Ec---c--------------------c-
Confidence 43211 12245689999999999 9988887 21 0 0
Q ss_pred CCCccCCHHHHHHHHHHCCCCceEEEecC
Q 044482 305 PQAKGRTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 305 ~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
...+++.++++++||++..+....
T Consensus 152 -----~~~~~l~~~~~~~g~~~~~~~~~~ 175 (188)
T PRK14968 152 -----TGEDEVLEYLEKLGFEAEVVAEEK 175 (188)
T ss_pred -----CCHHHHHHHHHHCCCeeeeeeecc
Confidence 123567899999999988775543
No 82
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.08 E-value=3.2e-09 Score=96.75 Aligned_cols=132 Identities=20% Similarity=0.221 Sum_probs=94.6
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-C-CEEEeccc-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS-G-QAIFTKSV- 243 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~-~-D~i~~~~v- 243 (345)
.....+|||+|||+|..+..+++..|..+++++|+ +.+++.++ +++++.+|++++.+. . |+|+++--
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34557899999999999999999999999999998 66666544 689999999886653 3 99987422
Q ss_pred -----cccCCh------------------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhh
Q 044482 244 -----LLNWSD------------------EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVM 300 (345)
Q Consensus 244 -----lh~~~d------------------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~ 300 (345)
++...+ +...++++++.+.|+| ||++++. - . .
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~e-~-----g-~--------------- 240 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLLE-I-----G-Y--------------- 240 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEEE-E-----C-c---------------
Confidence 111111 1235789999999999 9988776 1 0 0
Q ss_pred hhhcCCCccCCHHHHHHHHHHCCCCceEEEe-cCCceEEEEEE
Q 044482 301 YDLFPQAKGRTAGEFKALAMAAGFGTIKVIC-RSYCYWVIEFY 342 (345)
Q Consensus 301 ~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~ 342 (345)
...+++++++++.||+.+++.. ..+...++.++
T Consensus 241 ---------~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 ---------DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred ---------hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 0135688999999998777643 33444455444
No 83
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.08 E-value=2.7e-10 Score=98.45 Aligned_cols=93 Identities=15% Similarity=0.237 Sum_probs=73.1
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-C---CCCC--CEEEecc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-N---VPSG--QAIFTKS 242 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~---~p~~--D~i~~~~ 242 (345)
...++||||||+|.++..+++++|+..++++|+ +.+++.++ +++++.+|+.+ + ++.+ |.+++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 346899999999999999999999999999999 77777654 68999999975 2 3443 7777664
Q ss_pred ccccCChhH-------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VLLNWSDEQ-------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
-.+ |+... ...++++++++|+| ||.|++.
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~ 131 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFK 131 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCC---CCEEEEE
Confidence 432 22211 14689999999999 9999887
No 84
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.07 E-value=4.6e-10 Score=93.97 Aligned_cols=121 Identities=21% Similarity=0.233 Sum_probs=83.3
Q ss_pred EEeeh-hhHhhhCC------------CceEEeccCCc-CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCc
Q 044482 207 INFDL-PYVIKNAP------------CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHG 270 (345)
Q Consensus 207 ~~~Dl-p~~i~~a~------------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG 270 (345)
+++|. ++|++.|+ +++++.+|+.+ +++++ |+|++..++|+++|. .++|++++++||| ||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkp---GG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKP---GS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCc---Ce
Confidence 36787 77877652 48999999987 77654 999999999999876 5889999999999 99
Q ss_pred EEEEEeccCCCCCCCCchhhhhhhccchhhh---hhcCC-----------CccCCHHHHHHHHHHCCCCceEEEecCCc
Q 044482 271 RTQLRSKRGLPESPEFSSINRNILTLDIVMY---DLFPQ-----------AKGRTAGEFKALAMAAGFGTIKVICRSYC 335 (345)
Q Consensus 271 ~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~-----------~~~rt~~e~~~ll~~aGf~~~~~~~~~~~ 335 (345)
+++|. |...+++.-... ........... ..... ....+.+++.++|+++||+.++......+
T Consensus 76 ~l~i~-d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g 151 (160)
T PLN02232 76 RVSIL-DFNKSNQSVTTF--MQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG 151 (160)
T ss_pred EEEEE-ECCCCChHHHHH--HHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence 99999 887544311100 00000000000 00000 12358999999999999999988777643
No 85
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.02 E-value=5e-09 Score=95.85 Aligned_cols=94 Identities=18% Similarity=0.312 Sum_probs=73.7
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC-C-CEEEecc---
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS-G-QAIFTKS--- 242 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~-~-D~i~~~~--- 242 (345)
...+|||+|||+|.++..+++++|+.+++++|+ +.+++.|+ +++++.+|++++++. . |+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 346899999999999999999999999999999 78877665 588999999886664 3 9999851
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 ----------VLLNWSD----------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 ----------vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+++.+. +...++++++.+.|+| ||++++-
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~~e 250 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLVVE 250 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 1122111 1236789999999999 9987755
No 86
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.00 E-value=2.6e-09 Score=93.11 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=75.1
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-S 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-~ 234 (345)
..+++.++ .....+|||||||+|..+..+++..+ ..+++++|. +++++.++ +++++.+|+.+.++ .
T Consensus 62 ~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 62 AMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 34556555 55668999999999999999998864 568999999 77776554 47899999987544 2
Q ss_pred -C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 -G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 -~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|++...+++++ +++.+.|+| ||++++.
T Consensus 141 ~~fD~Ii~~~~~~~~~--------~~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 141 APFDAIIVTAAASTIP--------SALVRQLKD---GGVLVIP 172 (205)
T ss_pred CCccEEEEccCcchhh--------HHHHHhcCc---CcEEEEE
Confidence 3 9999998887665 356788999 9998776
No 87
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.99 E-value=2.7e-09 Score=100.31 Aligned_cols=102 Identities=18% Similarity=0.273 Sum_probs=77.5
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc---CCCCC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV---NVPSG 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~---~~p~~ 235 (345)
.+++.+. -.....+||||||+|.++..+++++|+..++++|+ +.+++.+. ++.++.+|+.. .+|++
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 4555554 33456899999999999999999999999999998 66665543 78899999843 45654
Q ss_pred --CEEEeccccccCChhH-----HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 --QAIFTKSVLLNWSDEQ-----CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 --D~i~~~~vlh~~~d~~-----~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|.|++.... -|+... ...+|+.++++|+| ||.+.+.
T Consensus 192 s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~ 234 (390)
T PRK14121 192 SVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKP---GGTLELR 234 (390)
T ss_pred ceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCC---CcEEEEE
Confidence 888875433 233221 14789999999999 9999998
No 88
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.99 E-value=2.1e-09 Score=97.91 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=69.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCC---eEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC--CEEEeccccccC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQI---TGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG--QAIFTKSVLLNW 247 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~---~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~ 247 (345)
...+|||||||+|.++..+++..|.. +++++|+ +.+++.|+ ++++..+|..+ +++++ |+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 34679999999999999999988753 6899999 88888775 78899999887 77654 99986532
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. ..+++++++|+| ||+++++
T Consensus 161 -~----~~~~e~~rvLkp---gG~li~~ 180 (272)
T PRK11088 161 -P----CKAEELARVVKP---GGIVITV 180 (272)
T ss_pred -C----CCHHHHHhhccC---CCEEEEE
Confidence 1 236789999999 9999988
No 89
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.98 E-value=1.5e-08 Score=95.98 Aligned_cols=133 Identities=17% Similarity=0.152 Sum_probs=95.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCC-C-C-CEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVP-S-G-QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p-~-~-D~i~~~~vlh 245 (345)
...+|||+|||+|.++..+++++|+.+++++|+ |.+++.++ +++++.+|+++ ..| . . |+|+++---.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 346899999999999999999999999999999 88888776 68999999987 344 2 2 9999853211
Q ss_pred cC------------Ch-----------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhh
Q 044482 246 NW------------SD-----------EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYD 302 (345)
Q Consensus 246 ~~------------~d-----------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~ 302 (345)
.- .+ +--.++++.+.+.|+| ||.+++. . ..
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~lilE--i--G~-------------------- 383 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLLLE--H--GF-------------------- 383 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEEEE--E--Cc--------------------
Confidence 00 00 1123677778889999 8876544 1 00
Q ss_pred hcCCCccCCHHHHHHHHHHCCCCceEEEec-CCceEEEEEEcCC
Q 044482 303 LFPQAKGRTAGEFKALAMAAGFGTIKVICR-SYCYWVIEFYKPK 345 (345)
Q Consensus 303 ~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~k~~ 345 (345)
...+++++++++.||+.+++..- .+..-++.+++.|
T Consensus 384 -------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~~~ 420 (423)
T PRK14966 384 -------DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYMK 420 (423)
T ss_pred -------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEEhh
Confidence 01456788999999998776544 4556666676654
No 90
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.98 E-value=4.9e-09 Score=91.57 Aligned_cols=103 Identities=19% Similarity=0.145 Sum_probs=77.0
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeehhhHhhhCCCceEEeccCCcC---------CCC-C-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDLPYVIKNAPCVEHVEGDMFVN---------VPS-G-Q 236 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~ri~~~~gd~~~~---------~p~-~-D 236 (345)
.+.+.+..+....+|||||||+|.++..++++. +..+++++|+.++... .+++++.+|+.++ ++. . |
T Consensus 41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~-~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI-VGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC-CCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 344444424566799999999999999999986 4578999999554322 3799999999873 343 3 9
Q ss_pred EEEeccccccCChhH---------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLLNWSDEQ---------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~---------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|++....|...+.. ...+|+.+++.|+| ||.+++.
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~ 164 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVK 164 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 999876665443321 24689999999999 9999987
No 91
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.98 E-value=7.7e-09 Score=91.21 Aligned_cols=140 Identities=12% Similarity=0.119 Sum_probs=105.4
Q ss_pred HHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcC---CCCC-
Q 044482 171 LEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVN---VPSG- 235 (345)
Q Consensus 171 ~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~---~p~~- 235 (345)
+..+.......+|||+|||.|..+..+++++++++++++++ +.+.+.|+ ||+++++|+.+. .+.+
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~ 115 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFAS 115 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccc
Confidence 33333244578999999999999999999999999999999 67777665 899999999872 2222
Q ss_pred -CEEEeccccccCChh----------------HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccch
Q 044482 236 -QAIFTKSVLLNWSDE----------------QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDI 298 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~----------------~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~ 298 (345)
|+|+|+=-.+.-.+. ....+++.+.+.||| ||++.++ ..+
T Consensus 116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V------~r~-------------- 172 (248)
T COG4123 116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFV------HRP-------------- 172 (248)
T ss_pred cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEE------ecH--------------
Confidence 899997655443332 235789999999999 9999888 110
Q ss_pred hhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCC------ceEEEEEEcC
Q 044482 299 VMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSY------CYWVIEFYKP 344 (345)
Q Consensus 299 ~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~------~~~vi~~~k~ 344 (345)
. ...|+.+++++.+|...++..+.+ ..-++++.|.
T Consensus 173 ----e-------rl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~ 213 (248)
T COG4123 173 ----E-------RLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKG 213 (248)
T ss_pred ----H-------HHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecC
Confidence 0 145788999999999988877742 3567787765
No 92
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.98 E-value=3.8e-09 Score=92.57 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=76.6
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-C
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-S 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-~ 234 (345)
...+++.++ .....+|||||||+|.++..+++.. ++.+++++|. |++++.++ +++++.+|..+..+ .
T Consensus 65 ~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 65 VAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 345666676 7778899999999999999998875 4578999998 88887665 68999999987443 3
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+ |+|++...+++.+ +.+.+.|+| ||++++.
T Consensus 144 ~~fD~I~~~~~~~~~~--------~~l~~~Lkp---gG~lvi~ 175 (212)
T PRK13942 144 APYDRIYVTAAGPDIP--------KPLIEQLKD---GGIMVIP 175 (212)
T ss_pred CCcCEEEECCCcccch--------HHHHHhhCC---CcEEEEE
Confidence 3 9999987765543 356678999 9998886
No 93
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.95 E-value=5.8e-09 Score=90.27 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=74.6
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcC---CCC-C
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVN---VPS-G 235 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~---~p~-~ 235 (345)
+++.++ .....+|||+|||+|.++..+++..|+.+++++|+ |.+++.++ +++++.+|+.+. +.. .
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 455555 56678999999999999999999899999999999 88877655 588999988652 222 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|.+++.. ......+++++++.|+| ||++++.
T Consensus 111 d~v~~~~------~~~~~~~l~~~~~~Lkp---gG~li~~ 141 (196)
T PRK07402 111 DRVCIEG------GRPIKEILQAVWQYLKP---GGRLVAT 141 (196)
T ss_pred CEEEEEC------CcCHHHHHHHHHHhcCC---CeEEEEE
Confidence 6655421 22346889999999999 9998888
No 94
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.94 E-value=1.3e-08 Score=91.46 Aligned_cols=122 Identities=17% Similarity=0.067 Sum_probs=83.0
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-CceEEec-cCCc-CCC--CCCEEEeccccccCChhH
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-CVEHVEG-DMFV-NVP--SGQAIFTKSVLLNWSDEQ 251 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-ri~~~~g-d~~~-~~p--~~D~i~~~~vlh~~~d~~ 251 (345)
....+|||||||+|.++..+++..+. +++++|+ |.+++.++ +++.-.. +... ... ..|+|+++.. .+.
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~-----~~~ 191 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANIL-----ANP 191 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCc-----HHH
Confidence 35679999999999999887765443 6999999 88888776 2111000 1111 111 2388887532 233
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEe
Q 044482 252 CLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVIC 331 (345)
Q Consensus 252 ~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~ 331 (345)
...+++++.+.|+| ||++++. +.... ..+++.+.+++.||+++++..
T Consensus 192 ~~~l~~~~~~~Lkp---gG~lils-gi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 192 LLELAPDLARLLKP---GGRLILS-GILEE-----------------------------QADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred HHHHHHHHHHhcCC---CcEEEEE-ECcHh-----------------------------hHHHHHHHHHHCCCEEEEEEE
Confidence 46789999999999 9999888 43211 145678999999999998877
Q ss_pred cCCceEE
Q 044482 332 RSYCYWV 338 (345)
Q Consensus 332 ~~~~~~v 338 (345)
......+
T Consensus 239 ~~~W~~~ 245 (250)
T PRK00517 239 RGEWVAL 245 (250)
T ss_pred eCCEEEE
Confidence 6554444
No 95
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.93 E-value=1.3e-08 Score=88.20 Aligned_cols=96 Identities=14% Similarity=0.150 Sum_probs=73.8
Q ss_pred HHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC---CC
Q 044482 171 LEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP---SG 235 (345)
Q Consensus 171 ~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p---~~ 235 (345)
+..++ .....+|||+|||+|.++..+++.. |..+++++|. +.+++.++ +++++.+|+.+..+ ..
T Consensus 33 l~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 33 LSKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 34455 6677899999999999999998864 6679999999 88877554 57888899876222 23
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++.. ...+...+|+.+.+.|+| ||++++.
T Consensus 112 ~D~V~~~~-----~~~~~~~~l~~~~~~Lkp---gG~lv~~ 144 (198)
T PRK00377 112 FDRIFIGG-----GSEKLKEIISASWEIIKK---GGRIVID 144 (198)
T ss_pred CCEEEECC-----CcccHHHHHHHHHHHcCC---CcEEEEE
Confidence 9998853 223346789999999999 9998865
No 96
>PRK04457 spermidine synthase; Provisional
Probab=98.92 E-value=3.3e-09 Score=95.86 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=74.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc---CCCCC-CEEEeccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV---NVPSG-QAIFTKSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~---~~p~~-D~i~~~~v 243 (345)
.+++|||||||+|.++..+++.+|+.+++++|+ |++++.|+ |++++.+|..+ ..+.. |+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~- 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG- 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence 457899999999999999999999999999999 99988765 68999999865 23334 9998753
Q ss_pred ccc--CChhH-HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 244 LLN--WSDEQ-CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 244 lh~--~~d~~-~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++. .+... ...+++++++.|+| ||.+++.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin 176 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN 176 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence 221 11111 25899999999999 9998886
No 97
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.92 E-value=8.7e-09 Score=90.53 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=75.4
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-C-
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-S- 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-~- 234 (345)
..+++.++ .....+|||||||+|.++..+++..+ +.+++++|. |++++.|+ +++++.+|..+..+ .
T Consensus 67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 45566666 66778999999999999999999865 467999998 88887665 68899999987433 2
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|++....++. ...+.+.|+| ||++++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKE---GGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCc---CcEEEEE
Confidence 3 999988765443 4457788999 9998876
No 98
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.91 E-value=4.7e-09 Score=96.98 Aligned_cols=92 Identities=18% Similarity=0.299 Sum_probs=73.5
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC-C-CEEEecc-----
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS-G-QAIFTKS----- 242 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~-~-D~i~~~~----- 242 (345)
.+|||+|||+|.++..+++++|+.+++++|+ +.+++.|+ +++++.+|+++.+|. . |+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 5899999999999999999999999999999 88887665 589999999886664 3 9999851
Q ss_pred --------ccccCCh----------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 --------VLLNWSD----------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 --------vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+++.+. +-..++++++.+.|+| ||++++-
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~E 262 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVVE 262 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 1122221 2236889999999999 9987765
No 99
>PHA03411 putative methyltransferase; Provisional
Probab=98.90 E-value=1.1e-08 Score=91.62 Aligned_cols=120 Identities=9% Similarity=0.090 Sum_probs=88.9
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCcCCC-CC-CEEEeccccccCChhHH
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFVNVP-SG-QAIFTKSVLLNWSDEQC 252 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~~~p-~~-D~i~~~~vlh~~~d~~~ 252 (345)
..+|||+|||+|.++..++++.+..+++++|+ |.+++.++ +++++.+|+++... .. |+|+++--+++.+.++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 46899999999999999999888889999999 88888776 68999999998433 33 99999888877654422
Q ss_pred ------------------HHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 253 ------------------LKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 253 ------------------~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
.+.++.+...|+| +|.++++ .. ..+ . + ....+.++
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~----ys--s~~-~-------y----------~~sl~~~~ 197 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA----YS--GRP-Y-------Y----------DGTMKSNK 197 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE----Ee--ccc-c-------c----------cccCCHHH
Confidence 3456667777888 7766555 11 110 0 0 01135899
Q ss_pred HHHHHHHCCCCc
Q 044482 315 FKALAMAAGFGT 326 (345)
Q Consensus 315 ~~~ll~~aGf~~ 326 (345)
|+++|+++||..
T Consensus 198 y~~~l~~~g~~~ 209 (279)
T PHA03411 198 YLKWSKQTGLVT 209 (279)
T ss_pred HHHHHHhcCcEe
Confidence 999999999964
No 100
>PRK14967 putative methyltransferase; Provisional
Probab=98.90 E-value=3.4e-08 Score=87.28 Aligned_cols=95 Identities=13% Similarity=0.082 Sum_probs=70.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCC-C-CEEEeccccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPS-G-QAIFTKSVLL 245 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~-~-D~i~~~~vlh 245 (345)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.++ +++++.+|+.+.++. . |+|+++--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 455579999999999999998876 3348999999 77776554 578889998875553 3 9999873222
Q ss_pred cCCh-------------------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 246 NWSD-------------------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d-------------------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.-++ .....+++++.+.|+| ||+++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~ 158 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLV 158 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEE
Confidence 1111 1135688999999999 9999986
No 101
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.89 E-value=2.8e-08 Score=85.87 Aligned_cols=139 Identities=17% Similarity=0.155 Sum_probs=91.3
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------------------------------
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------------------------------ 219 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------------------------ 219 (345)
|-....+|||||..|.++..+++.+-...++++|+ |..|..|+
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 55678999999999999999999998888999999 66677665
Q ss_pred ---------------CceEEeccCCc-CCCCCCEEEe----ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 220 ---------------CVEHVEGDMFV-NVPSGQAIFT----KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 220 ---------------ri~~~~gd~~~-~~p~~D~i~~----~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
++.+...||++ ..|.-|+|+| +||=-+|.|+-..++|+++.+.|.| ||.+++- +
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---gGiLvvE--P- 209 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---GGILVVE--P- 209 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---CcEEEEc--C-
Confidence 12222233443 2233388776 4555589999999999999999999 8865554 2
Q ss_pred CCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHC--CCCce
Q 044482 280 LPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAA--GFGTI 327 (345)
Q Consensus 280 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~a--Gf~~~ 327 (345)
++....... ..... .+....-......+.++.++.+. ||+.+
T Consensus 210 ---QpWksY~ka-ar~~e--~~~~ny~~i~lkp~~f~~~l~q~~vgle~~ 253 (288)
T KOG2899|consen 210 ---QPWKSYKKA-ARRSE--KLAANYFKIFLKPEDFEDWLNQIVVGLESV 253 (288)
T ss_pred ---CchHHHHHH-HHHHH--HhhcCccceecCHHHHHhhhhhhhhheeee
Confidence 221111111 11111 11111123345788999999987 55543
No 102
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.89 E-value=2.1e-08 Score=85.43 Aligned_cols=165 Identities=12% Similarity=0.082 Sum_probs=101.8
Q ss_pred CcchhhhhccCchhHHHHHHHHHHh----hHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhh
Q 044482 138 HIMDCIYLTMLPMMLNLFNQSMQNH----TAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPY 213 (345)
Q Consensus 138 g~~~~~~~~~~~~~~~~f~~~m~~~----~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~ 213 (345)
|..-++.+.++|+.-+.|+++-... .....+.+++.+..-+....|.|+|||.+.++..+.+ ..++.-+|+-.
T Consensus 27 s~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva 103 (219)
T PF05148_consen 27 SEEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA 103 (219)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccC
Confidence 4445666778887766666654432 2233556777766333456899999999999966543 34788999822
Q ss_pred HhhhCCCceEEeccCCc-CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhh
Q 044482 214 VIKNAPCVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSIN 290 (345)
Q Consensus 214 ~i~~a~ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~ 290 (345)
. +-.+++.|+-. |++++ |++++.-.|.- .+....|+++.|.||| ||.+.|. |...
T Consensus 104 ~-----n~~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~---~G~L~IA-EV~S---------- 161 (219)
T PF05148_consen 104 P-----NPRVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKP---GGILKIA-EVKS---------- 161 (219)
T ss_dssp S-----STTEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEE---EEEEEEE-EEGG----------
T ss_pred C-----CCCEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheecc---CcEEEEE-Eecc----------
Confidence 1 33467899976 77765 99888877743 2346789999999999 9999999 6421
Q ss_pred hhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 291 RNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 291 ~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
++ -+.+++.+.+++.||+............+++..|.
T Consensus 162 Rf-----------------~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~ 198 (219)
T PF05148_consen 162 RF-----------------ENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKI 198 (219)
T ss_dssp G------------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-
T ss_pred cC-----------------cCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEc
Confidence 11 13677899999999999876555566788888775
No 103
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.89 E-value=1e-08 Score=77.75 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=72.1
Q ss_pred ceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCC--C-CC-CEEEeccccccC
Q 044482 182 KLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNV--P-SG-QAIFTKSVLLNW 247 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~--p-~~-D~i~~~~vlh~~ 247 (345)
+++|+|||.|.++..+++ .+..+++++|+ +..+..++ +++++.+|+.+.. + .. |++++...++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 67789999998 44443221 7899999998833 2 33 999999999886
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+....+++++.+.|+| +|.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 45667899999999999 9988764
No 104
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.88 E-value=1.6e-08 Score=92.72 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=73.8
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC-C-CEEEec------
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS-G-QAIFTK------ 241 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~-~-D~i~~~------ 241 (345)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.++ +++++.+|++++++. . |+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 5899999999999999999999999999999 77777665 489999999987764 4 999885
Q ss_pred -------cccccCCh----------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 242 -------SVLLNWSD----------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 242 -------~vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.++++-+. +...++++++.+.|+| ||.+++-
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l~~e 243 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFLVCE 243 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEEEEE
Confidence 23333221 1356799999999999 9977655
No 105
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.86 E-value=1.9e-08 Score=84.38 Aligned_cols=95 Identities=22% Similarity=0.191 Sum_probs=78.7
Q ss_pred HHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC---CCCE
Q 044482 171 LEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP---SGQA 237 (345)
Q Consensus 171 ~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p---~~D~ 237 (345)
+..+. ..+..+++|||||+|..+..++..+|..+++.+|. ++.++..+ +++++.||.-+.++ +-|.
T Consensus 27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 45555 67778999999999999999999999999999998 66665443 89999999987444 2499
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
||+..-- ....+|..+...|+| ||+|++.
T Consensus 106 iFIGGg~------~i~~ile~~~~~l~~---ggrlV~n 134 (187)
T COG2242 106 IFIGGGG------NIEEILEAAWERLKP---GGRLVAN 134 (187)
T ss_pred EEECCCC------CHHHHHHHHHHHcCc---CCeEEEE
Confidence 9998762 225789999999999 9999988
No 106
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.86 E-value=8.5e-08 Score=86.18 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=72.0
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCcCCC----CC-CEEEecccc---
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFVNVP----SG-QAIFTKSVL--- 244 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~~~p----~~-D~i~~~~vl--- 244 (345)
..+|||+|||+|.++..++++.|..+++++|. |.+++.++ +++++.+|+++.++ .. |+|+++--.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 35899999999999999999999999999999 88888776 46899999987543 23 998876321
Q ss_pred ---ccCChh------------------HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 245 ---LNWSDE------------------QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 245 ---h~~~d~------------------~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+..+++ -..++++.+.+.|+| ||++++.
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~ 215 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVE 215 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 111111 124788888899999 9988876
No 107
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.82 E-value=2.6e-08 Score=93.22 Aligned_cols=100 Identities=15% Similarity=0.074 Sum_probs=74.2
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCC-C-C
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPS-G-Q 236 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~-~-D 236 (345)
++.... +.+..+|||+|||+|.++...+.. ..+++++|+ +.++..++ .+.+..+|+.+ +.+. . |
T Consensus 174 ~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D 250 (329)
T TIGR01177 174 MVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVD 250 (329)
T ss_pred HHHHhC-CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCC
Confidence 344334 667789999999999999886653 578999999 77877655 46788999987 5553 3 9
Q ss_pred EEEecccc-------ccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVL-------LNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vl-------h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|++.--. .+...+...++|+++++.|+| ||++++.
T Consensus 251 ~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~ 293 (329)
T TIGR01177 251 AIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYA 293 (329)
T ss_pred EEEECCCCcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEE
Confidence 99985221 111223347899999999999 9998887
No 108
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.81 E-value=7e-09 Score=81.76 Aligned_cols=91 Identities=19% Similarity=0.175 Sum_probs=72.5
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-C--CCCC--CEEEecccc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-N--VPSG--QAIFTKSVL 244 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~--~p~~--D~i~~~~vl 244 (345)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++ +++++.+|+++ . .+.+ |+|+++--.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999999 77766554 68999999987 3 4443 999998666
Q ss_pred ccCCh------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 245 LNWSD------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 245 h~~~d------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+.... +....+++++.+.|+| ||.++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~ 114 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFI 114 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEE
Confidence 54321 1346889999999999 9988876
No 109
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.81 E-value=3.8e-08 Score=84.57 Aligned_cols=102 Identities=16% Similarity=0.192 Sum_probs=74.4
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeehhhHhhhCCCceEEeccCCcC---------CCC-C-CE
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDLPYVIKNAPCVEHVEGDMFVN---------VPS-G-QA 237 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~ri~~~~gd~~~~---------~p~-~-D~ 237 (345)
+.+.+.......+|||+|||+|.++..+++++ +..+++++|+.++. ...+++++.+|+.++ .+. + |+
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence 44445445667899999999999999999887 56789999995433 223788899998762 343 3 99
Q ss_pred EEeccccc---cCCh------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLL---NWSD------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh---~~~d------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|++....| .|+- +...++|+++++.|+| ||++++.
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~ 145 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK 145 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 99854322 1221 1235789999999999 9999886
No 110
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.79 E-value=8.7e-08 Score=94.45 Aligned_cols=129 Identities=14% Similarity=0.159 Sum_probs=92.0
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC-C-CEEEecc----
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS-G-QAIFTKS---- 242 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~-~-D~i~~~~---- 242 (345)
..+|||||||+|.++..+++++|+.+++++|+ |.+++.|+ +++++.+|+++.++. . |+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 35899999999999999999999999999999 77877665 588999999886653 3 9999841
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhh
Q 044482 243 ----------VLLNWSD----------EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYD 302 (345)
Q Consensus 243 ----------vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~ 302 (345)
++.+.+. +--.++++++.+.|+| ||.+++- . ..
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~lE--i--g~-------------------- 271 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIILE--I--GF-------------------- 271 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEEE--E--CC--------------------
Confidence 1111111 1234688899999999 9987654 1 00
Q ss_pred hcCCCccCCHHHHHHHHHHCCCCceEEEec-CCceEEEEEE
Q 044482 303 LFPQAKGRTAGEFKALAMAAGFGTIKVICR-SYCYWVIEFY 342 (345)
Q Consensus 303 ~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 342 (345)
...+...+++++.||+.+++..- .+..-++.+.
T Consensus 272 -------~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~~ 305 (506)
T PRK01544 272 -------KQEEAVTQIFLDHGYNIESVYKDLQGHSRVILIS 305 (506)
T ss_pred -------chHHHHHHHHHhcCCCceEEEecCCCCceEEEec
Confidence 01455778889999988776543 4444444443
No 111
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.78 E-value=4.1e-08 Score=90.09 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=68.1
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC-CE
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG-QA 237 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~-D~ 237 (345)
+++.+. . ...+|||||||+|.++..+++. +..+++++|+ |.+++.++ ++.+..+|.....+.. |+
T Consensus 152 ~l~~~~-~-~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDl 228 (288)
T TIGR00406 152 WLEDLD-L-KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADV 228 (288)
T ss_pred HHHhhc-C-CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceE
Confidence 344443 2 4479999999999999888764 4458999999 77777665 3455555533222233 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+++... +....+++++++.|+| ||++++.
T Consensus 229 Vvan~~~-----~~l~~ll~~~~~~Lkp---gG~li~s 258 (288)
T TIGR00406 229 IVANILA-----EVIKELYPQFSRLVKP---GGWLILS 258 (288)
T ss_pred EEEecCH-----HHHHHHHHHHHHHcCC---CcEEEEE
Confidence 9886443 2345789999999999 9999888
No 112
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.75 E-value=3.1e-08 Score=85.32 Aligned_cols=94 Identities=17% Similarity=0.260 Sum_probs=67.8
Q ss_pred cccceEEecCCccH----HHHHHHHH----CC-CCeEEEeeh-hhHhhhCC-----------------------------
Q 044482 179 ELKKLVDVASCLGA----NMSLIVNT----YP-QITGINFDL-PYVIKNAP----------------------------- 219 (345)
Q Consensus 179 ~~~~vlDiGgG~G~----~~~~l~~~----~p-~~~~~~~Dl-p~~i~~a~----------------------------- 219 (345)
..-+|...||++|. +++.+.+. .+ +.++++-|+ +.+++.|+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999999997 33334441 12 367899999 77887766
Q ss_pred --------CceEEeccCCc-CCCC-C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 --------CVEHVEGDMFV-NVPS-G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 --------ri~~~~gd~~~-~~p~-~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|+|..+|..+ +.+. . |+|+|+|||-+++++...+++++++++|+| ||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEe
Confidence 68999999999 3333 3 999999999999999999999999999999 9988887
No 113
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.73 E-value=1.8e-07 Score=82.05 Aligned_cols=96 Identities=8% Similarity=0.060 Sum_probs=80.5
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC-------------------C--CceEEeccCCc-CCC-
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA-------------------P--CVEHVEGDMFV-NVP- 233 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a-------------------~--ri~~~~gd~~~-~~p- 233 (345)
....+||+.|||.|.-+..|+++ +.+++++|+ +..++.+ + +++++++|+|+ +.+
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34579999999999999999986 457999999 5555542 1 78999999998 322
Q ss_pred --CC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 234 --SG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 234 --~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
.+ |+|+=+.+|+.++++...+..+++.+.|+| ||+++++ ...
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll-~~~ 165 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLL-VME 165 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEE-EEe
Confidence 13 999999999999999999999999999999 9998888 543
No 114
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.71 E-value=1.1e-07 Score=83.27 Aligned_cols=93 Identities=12% Similarity=0.173 Sum_probs=71.7
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-C--
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS-G-- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~-~-- 235 (345)
.+++.++ .....+|||||||+|.++..+++... +++++|. +.+++.++ +++++.+|+.+.++. +
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 4455555 56678999999999999988887753 6889998 77776554 588999998875542 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++...++++ .+++.+.|+| ||++++.
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~---gG~lv~~ 174 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKE---GGILVAP 174 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCC---CcEEEEE
Confidence 999998776554 3456789999 9998887
No 115
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.68 E-value=6.1e-07 Score=78.36 Aligned_cols=161 Identities=14% Similarity=0.083 Sum_probs=110.0
Q ss_pred chhhhhccCchhHHHHHHHHHHhhH----HHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHh
Q 044482 140 MDCIYLTMLPMMLNLFNQSMQNHTA----IVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVI 215 (345)
Q Consensus 140 ~~~~~~~~~~~~~~~f~~~m~~~~~----~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i 215 (345)
..++.+.+||..-+.|+......-. .....|++.+..-+....|-|+|||-+.++. .- .-.++.+||-.+
T Consensus 137 ~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~----~~-~~kV~SfDL~a~- 210 (325)
T KOG3045|consen 137 EAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS----SE-RHKVHSFDLVAV- 210 (325)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh----cc-ccceeeeeeecC-
Confidence 3455667888877777776554322 2245667766633456789999999999886 11 125788887322
Q ss_pred hhCCCceEEeccCCc-CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhh
Q 044482 216 KNAPCVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRN 292 (345)
Q Consensus 216 ~~a~ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~ 292 (345)
+-.++..|+.+ |+++. |++++.-.|.- .+....+++++|.|+| ||.++|. |.-.
T Consensus 211 ----~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~---gG~l~IA-Ev~S------------ 267 (325)
T KOG3045|consen 211 ----NERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKP---GGLLYIA-EVKS------------ 267 (325)
T ss_pred ----CCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhcc---CceEEEE-ehhh------------
Confidence 44567899988 77754 88776655532 2335789999999999 9999999 5411
Q ss_pred hhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 293 ILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 293 ~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
.. -+...+.+.|+..||...+.........+++..|+
T Consensus 268 -Rf--------------~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~ 304 (325)
T KOG3045|consen 268 -RF--------------SDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKT 304 (325)
T ss_pred -hc--------------ccHHHHHHHHHHcCCeeeehhhhcceEEEEEEecC
Confidence 11 12445889999999998776655556777777764
No 116
>PRK00811 spermidine synthase; Provisional
Probab=98.68 E-value=6.9e-08 Score=88.32 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=71.4
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------CceEEeccCCcCC--CC-C-CEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------CVEHVEGDMFVNV--PS-G-QAI 238 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~~~--p~-~-D~i 238 (345)
++.++||+||||.|..+..++++.+..+++++|+ |.+++.++ |++++.+|..+-+ +. . |+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3567999999999999999997645568999999 88877654 6889999987733 23 3 999
Q ss_pred EeccccccCChhH--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 239 FTKSVLLNWSDEQ--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 239 ~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++...-+.-+... ...+++.+++.|+| ||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9864433222221 25789999999999 9987765
No 117
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.67 E-value=1.3e-07 Score=83.27 Aligned_cols=146 Identities=16% Similarity=0.109 Sum_probs=91.4
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC--CceEEeccCCcCCCCC-CEEEeccccccCChhHHHHHH
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP--CVEHVEGDMFVNVPSG-QAIFTKSVLLNWSDEQCLKIL 256 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~--ri~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~~~iL 256 (345)
..++||||.|.|..+..++..+.++.++-.. +.|....+ +++++..|-...-+.. |+|.|-|+|-...++ ..+|
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S-~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~~LL 171 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKEVYATEAS-PPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--LTLL 171 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcceEEeecCC-HHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCH--HHHH
Confidence 4689999999999999999999875444433 45544333 5666655433322223 999999999777776 5899
Q ss_pred HHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCC
Q 044482 257 KNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSY 334 (345)
Q Consensus 257 ~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~ 334 (345)
+.++++|+| +|++++. .++|-.+--.........-+ ..+.+.+..-+-..+.+.++|+.+||++++....|+
T Consensus 172 ~~i~~~l~p---~G~lilA--vVlP~~pyVE~~~g~~~~P~-e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~PY 243 (265)
T PF05219_consen 172 RDIRRALKP---NGRLILA--VVLPFRPYVEFGGGKSNRPS-ELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLPY 243 (265)
T ss_pred HHHHHHhCC---CCEEEEE--EEecccccEEcCCCCCCCch-hhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccCc
Confidence 999999999 9988876 44443210000000000000 011121111122233445899999999999998874
No 118
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.66 E-value=8e-08 Score=87.38 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=74.8
Q ss_pred ccceEEecCCccH----HHHHHHHHCC----CCeEEEeeh-hhHhhhCC-------------------------------
Q 044482 180 LKKLVDVASCLGA----NMSLIVNTYP----QITGINFDL-PYVIKNAP------------------------------- 219 (345)
Q Consensus 180 ~~~vlDiGgG~G~----~~~~l~~~~p----~~~~~~~Dl-p~~i~~a~------------------------------- 219 (345)
.-+|...||++|. +++.+.+..+ +.++++.|+ +.+++.|+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3689999999997 3444444433 367899998 66666543
Q ss_pred ---------CceEEeccCCc-CCC--CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 ---------CVEHVEGDMFV-NVP--SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 ---------ri~~~~gd~~~-~~p--~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|+|..+|..+ ++| .. |+|+|+++|.|++++...+++++++++|+| ||.|++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence 57899999998 554 33 999999999999999999999999999999 9987776
No 119
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.66 E-value=1.4e-07 Score=82.74 Aligned_cols=129 Identities=20% Similarity=0.203 Sum_probs=94.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------------------CceEEeccCCc-CCC
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------------------CVEHVEGDMFV-NVP 233 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------------------ri~~~~gd~~~-~~p 233 (345)
.....+||+.|||.|.-+..|+++ +.+++++|+ +..++.+. +|++..||||+ +-.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 455679999999999999999987 468999999 55565531 57899999999 322
Q ss_pred C-C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCC-CCchhhhhhhccchhhhhhcCCCcc
Q 044482 234 S-G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESP-EFSSINRNILTLDIVMYDLFPQAKG 309 (345)
Q Consensus 234 ~-~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~ 309 (345)
. + |+|+=...|+-++++...+-.+++++.|+| ||+++++ ....+... .+|+ ..
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi-~l~~~~~~~~GPP-------------------f~ 169 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLI-TLEYPQGEMEGPP-------------------FS 169 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEE-EEES-CSCSSSSS---------------------
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEE-EEEcCCcCCCCcC-------------------CC
Confidence 2 2 999999999999999999999999999999 9995444 33322221 1111 12
Q ss_pred CCHHHHHHHHHHCCCCceEEEe
Q 044482 310 RTAGEFKALAMAAGFGTIKVIC 331 (345)
Q Consensus 310 rt~~e~~~ll~~aGf~~~~~~~ 331 (345)
.+.+|+++++. .+|++.....
T Consensus 170 v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 170 VTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp --HHHHHHHHT-TTEEEEEEEE
T ss_pred CCHHHHHHHhc-CCcEEEEEec
Confidence 35889999999 8888766543
No 120
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.64 E-value=3.9e-07 Score=81.92 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=96.0
Q ss_pred chhhhhccCchhHHHHHHHHHHhhHH----------HHHHHHHhccCcc--cccceEEecCCccH----HHHHHHHHCC-
Q 044482 140 MDCIYLTMLPMMLNLFNQSMQNHTAI----------VMKKILEIYKGFK--ELKKLVDVASCLGA----NMSLIVNTYP- 202 (345)
Q Consensus 140 ~~~~~~~~~~~~~~~f~~~m~~~~~~----------~~~~i~~~~~~~~--~~~~vlDiGgG~G~----~~~~l~~~~p- 202 (345)
.++..+..+++..+.|..+|...-.. ....++..+-... +.-+|.-.||++|. +++.+.+..|
T Consensus 45 ~y~~~l~~~~~e~~~~l~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~ 124 (268)
T COG1352 45 EYLNLLESDSEELQAFLDALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGK 124 (268)
T ss_pred HHHHHHhCCHHHHHHHHHHhhhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhcc
Confidence 34555666666666666666532211 1122222211011 35689999999997 6666667776
Q ss_pred ----CCeEEEeeh-hhHhhhCC--------------------------------------CceEEeccCCcCC--CCC-C
Q 044482 203 ----QITGINFDL-PYVIKNAP--------------------------------------CVEHVEGDMFVNV--PSG-Q 236 (345)
Q Consensus 203 ----~~~~~~~Dl-p~~i~~a~--------------------------------------ri~~~~gd~~~~~--p~~-D 236 (345)
..++++-|+ ..+++.|+ .|.|..+|.+++. +.. |
T Consensus 125 ~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD 204 (268)
T COG1352 125 LAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFD 204 (268)
T ss_pred ccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCC
Confidence 467899998 77777766 5889999999844 344 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|+|+|||=+|+.+...+++++.+..|+| ||.|+|-
T Consensus 205 ~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG 240 (268)
T COG1352 205 LIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLG 240 (268)
T ss_pred EEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEc
Confidence 99999999999999999999999999999 9998887
No 121
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=1.7e-06 Score=78.92 Aligned_cols=127 Identities=21% Similarity=0.203 Sum_probs=89.8
Q ss_pred ceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCCC-CEEEec--ccccc--
Q 044482 182 KLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPSG-QAIFTK--SVLLN-- 246 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~~-D~i~~~--~vlh~-- 246 (345)
+|||||||+|..+..++.++|++++++.|+ |..++.|+ ++.++.+|.|++++.. |+|+++ ++=..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 799999999999999999999999999999 88887775 4567777999877644 988875 22221
Q ss_pred -CCh------------------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCC
Q 044482 247 -WSD------------------EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA 307 (345)
Q Consensus 247 -~~d------------------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 307 (345)
..+ +-..+++.++.+.|+| ||.+++- . . ..
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~---~g~l~le--~----g-------------------~~--- 241 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP---GGVLILE--I----G-------------------LT--- 241 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC---CcEEEEE--E----C-------------------CC---
Confidence 111 1335788888899999 7765555 1 0 00
Q ss_pred ccCCHHHHHHHHHHCC-CCceEEEecC-CceEEEEEE
Q 044482 308 KGRTAGEFKALAMAAG-FGTIKVICRS-YCYWVIEFY 342 (345)
Q Consensus 308 ~~rt~~e~~~ll~~aG-f~~~~~~~~~-~~~~vi~~~ 342 (345)
..+..++++.+.| |..+.+.... +...++.+.
T Consensus 242 ---q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~ 275 (280)
T COG2890 242 ---QGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAK 275 (280)
T ss_pred ---cHHHHHHHHHhcCCceEEEEEecCCCceEEEEEE
Confidence 1566789999999 6656555544 334444443
No 122
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.60 E-value=2e-09 Score=71.04 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=41.8
Q ss_pred HHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCc
Q 044482 27 MHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPV 81 (345)
Q Consensus 27 ~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~ 81 (345)
|+|++|++|| |||.|...||.+.|++|||.+++. .+++++..++|+||+|+
T Consensus 1 MaLk~aveLg-I~dii~~~g~~~ls~~eia~~l~~---~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELG-IPDIIHNAGGGPLSLSEIAARLPT---SNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTT-HHHHHHHHTTS-BEHHHHHHTSTC---T-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcC-cHHHHHHcCCCCCCHHHHHHHcCC---CCcchHHHHHHHHHHhC
Confidence 7899999999 999996555478999999999993 25567889999999874
No 123
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.60 E-value=3.5e-07 Score=75.81 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=86.9
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcC-CCCC--CEEEeccccc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVN-VPSG--QAIFTKSVLL 245 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~-~p~~--D~i~~~~vlh 245 (345)
..+|||+|||.|+++..|++.-=.-..+++|. +..++.|+ .|+|++.|+++| +-.+ |+|+=+..+-
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 34999999999999999998743335788887 66666555 399999999984 2233 8887665553
Q ss_pred c------CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHH
Q 044482 246 N------WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALA 319 (345)
Q Consensus 246 ~------~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll 319 (345)
. -.+.....-+-.+.+.|+| ||.++|. . + ..|.+|+.+.+
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~---~gifvIt-S-------------------------C-----N~T~dELv~~f 193 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVIT-S-------------------------C-----NFTKDELVEEF 193 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCC---CcEEEEE-e-------------------------c-----CccHHHHHHHH
Confidence 2 2222223456778888899 8988888 1 1 14689999999
Q ss_pred HHCCCCceEEEecC
Q 044482 320 MAAGFGTIKVICRS 333 (345)
Q Consensus 320 ~~aGf~~~~~~~~~ 333 (345)
+.-||+.....+.|
T Consensus 194 ~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 194 ENFNFEYLSTVPTP 207 (227)
T ss_pred hcCCeEEEEeeccc
Confidence 99999888777665
No 124
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.57 E-value=2.2e-07 Score=78.45 Aligned_cols=99 Identities=12% Similarity=0.183 Sum_probs=68.3
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC--C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG--Q 236 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~--D 236 (345)
..+++.++ +....+|||||||+|.++..++++ ..+++++|. +.+++.++ +++++.+|+.+ +.+.. |
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 45667776 667789999999999999999988 467899998 66766554 68999999998 55543 7
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.|+. +.-++.+.+...+++++.. +.+ +|.+++-
T Consensus 80 ~vi~-n~Py~~~~~~i~~~l~~~~--~~~---~~~l~~q 112 (169)
T smart00650 80 KVVG-NLPYNISTPILFKLLEEPP--AFR---DAVLMVQ 112 (169)
T ss_pred EEEE-CCCcccHHHHHHHHHhcCC--Ccc---eEEEEEE
Confidence 6655 4555555444444443221 335 5655444
No 125
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.57 E-value=1.5e-07 Score=80.69 Aligned_cols=141 Identities=12% Similarity=0.123 Sum_probs=94.2
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------Cc-eEEeccCCc-CCCC-CCEEE
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CV-EHVEGDMFV-NVPS-GQAIF 239 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri-~~~~gd~~~-~~p~-~D~i~ 239 (345)
++...+ ....+++||+|||||.++.+|...-. +.+++|+ ..|+++|. .+ .-...+|.. .-++ .|+|.
T Consensus 117 mI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 117 MIGKAD-LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred HHHhcc-CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchh
Confidence 344444 44578999999999999999987754 4688999 78888876 11 111122443 2222 39999
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHH
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALA 319 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll 319 (345)
...||-++.+-+ .++--+...|+| ||.+....|. .++... +++.-. .-...++..++.++
T Consensus 194 AaDVl~YlG~Le--~~~~~aa~~L~~---gGlfaFSvE~-l~~~~~-------------f~l~ps-~RyAH~~~YVr~~l 253 (287)
T COG4976 194 AADVLPYLGALE--GLFAGAAGLLAP---GGLFAFSVET-LPDDGG-------------FVLGPS-QRYAHSESYVRALL 253 (287)
T ss_pred hhhHHHhhcchh--hHHHHHHHhcCC---CceEEEEecc-cCCCCC-------------eecchh-hhhccchHHHHHHH
Confidence 999998887754 789999999999 9977766233 222210 000000 11223577789999
Q ss_pred HHCCCCceEEEecC
Q 044482 320 MAAGFGTIKVICRS 333 (345)
Q Consensus 320 ~~aGf~~~~~~~~~ 333 (345)
+..||.++++.+++
T Consensus 254 ~~~Gl~~i~~~~tt 267 (287)
T COG4976 254 AASGLEVIAIEDTT 267 (287)
T ss_pred HhcCceEEEeeccc
Confidence 99999999987653
No 126
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.56 E-value=2.9e-07 Score=85.29 Aligned_cols=95 Identities=16% Similarity=0.211 Sum_probs=72.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC--CC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP--SG 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p--~~ 235 (345)
.+++.++ ..+..+|||||||+|.++..+++..+. .+++++|. +++++.|+ +++++.+|..+..+ ..
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 4555555 666689999999999999999998864 47899998 77776554 58899999876433 22
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++...+++. ...+.+.|+| ||++++.
T Consensus 150 fD~Ii~~~g~~~i--------p~~~~~~Lkp---gG~Lvv~ 179 (322)
T PRK13943 150 YDVIFVTVGVDEV--------PETWFTQLKE---GGRVIVP 179 (322)
T ss_pred ccEEEECCchHHh--------HHHHHHhcCC---CCEEEEE
Confidence 999987665443 3345678999 9998885
No 127
>PLN02366 spermidine synthase
Probab=98.56 E-value=2.7e-07 Score=85.02 Aligned_cols=94 Identities=19% Similarity=0.091 Sum_probs=69.4
Q ss_pred ccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC-------------CceEEeccCCc---CCCC-C-CE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP-------------CVEHVEGDMFV---NVPS-G-QA 237 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~---~~p~-~-D~ 237 (345)
++.++||+||||.|.++..+++. |. .+++++|+ +.|++.++ |++++.+|..+ ..++ . |+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 45689999999999999999865 55 57899998 66776544 79999999865 3333 3 99
Q ss_pred EEeccccccCChhH--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLLNWSDEQ--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|++-..-+.-+... ...+++.+++.|+| ||.+++.
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEC
Confidence 98854332222111 24689999999999 9987665
No 128
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.53 E-value=4.1e-07 Score=78.83 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=68.2
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------------CceEEeccC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------------CVEHVEGDM 228 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------ri~~~~gd~ 228 (345)
..+++.+. ..+...++|||||.|......+-.++--+++|+++ |...+.|+ ++++..|||
T Consensus 32 ~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 32 SKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 35566666 77778999999999999988887775445999998 54443332 678899999
Q ss_pred Cc-CC-----CCCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCC
Q 044482 229 FV-NV-----PSGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPES 283 (345)
Q Consensus 229 ~~-~~-----p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~ 283 (345)
++ +. .++|+|++++.+ |+++-..+ |++....||+ |.+|+.. ..+.+..
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~-L~~~~~~lk~---G~~IIs~-~~~~~~~ 164 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FDPDLNLA-LAELLLELKP---GARIIST-KPFCPRR 164 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T-HHHHHH-HHHHHTTS-T---T-EEEES-S-SS-TT
T ss_pred cccHhHhhhhcCCCEEEEeccc--cCHHHHHH-HHHHHhcCCC---CCEEEEC-CCcCCCC
Confidence 87 32 356999999987 67665544 4777788999 8888777 7766654
No 129
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1.9e-06 Score=78.27 Aligned_cols=124 Identities=23% Similarity=0.257 Sum_probs=84.6
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------Cce----EEeccCCcCCCC-C-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVE----HVEGDMFVNVPS-G- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~----~~~gd~~~~~p~-~- 235 (345)
.+++.+. .++.++||+|||+|.++++.++.-. .+++++|+ |..++.++ ++. ....+.. ..+. +
T Consensus 154 ~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~-~~~~~~~ 229 (300)
T COG2264 154 EALEKLL--KKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLL-EVPENGP 229 (300)
T ss_pred HHHHHhh--cCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccch-hhcccCc
Confidence 3455554 3678999999999999999887653 47899999 76677666 333 2222222 3332 2
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|+|+.+ +| .+. ...+...+.+.++| ||++++. -. +.+ -.+.
T Consensus 230 ~DvIVAN-IL---A~v-l~~La~~~~~~lkp---gg~lIlS-GI-l~~----------------------------q~~~ 271 (300)
T COG2264 230 FDVIVAN-IL---AEV-LVELAPDIKRLLKP---GGRLILS-GI-LED----------------------------QAES 271 (300)
T ss_pred ccEEEeh-hh---HHH-HHHHHHHHHHHcCC---CceEEEE-ee-hHh----------------------------HHHH
Confidence 888765 33 222 35788999999999 9988888 21 111 1455
Q ss_pred HHHHHHHCCCCceEEEecCC
Q 044482 315 FKALAMAAGFGTIKVICRSY 334 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~~~ 334 (345)
+.+.++++||+++++.....
T Consensus 272 V~~a~~~~gf~v~~~~~~~e 291 (300)
T COG2264 272 VAEAYEQAGFEVVEVLEREE 291 (300)
T ss_pred HHHHHHhCCCeEeEEEecCC
Confidence 77889999999998876643
No 130
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.50 E-value=1.8e-07 Score=81.02 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=64.6
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---C-------ceEEeccCCcCC--CCC-CEEEeccccc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---C-------VEHVEGDMFVNV--PSG-QAIFTKSVLL 245 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---r-------i~~~~gd~~~~~--p~~-D~i~~~~vlh 245 (345)
.+.++|||||+|..++.++..|. ++|+.|. +.|++.++ + .+....++.+-. ++. |+|++..++|
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHH
Confidence 34899999999988888888765 4899998 88998887 2 222222322211 233 9999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.|+-+ ++.+.++++|++ .|.++.+
T Consensus 112 WFdle---~fy~~~~rvLRk---~Gg~iav 135 (261)
T KOG3010|consen 112 WFDLE---RFYKEAYRVLRK---DGGLIAV 135 (261)
T ss_pred hhchH---HHHHHHHHHcCC---CCCEEEE
Confidence 99876 679999999999 5544444
No 131
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.50 E-value=2.4e-07 Score=80.01 Aligned_cols=87 Identities=17% Similarity=0.256 Sum_probs=64.5
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc----CCCCC--CEEEecccc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV----NVPSG--QAIFTKSVL 244 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~----~~p~~--D~i~~~~vl 244 (345)
..+||||||.|.++..+++.+|+..++++|. ...+..+. ++.++.+|+.. -++++ |-|++.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~--- 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN--- 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE---
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe---
Confidence 3899999999999999999999999999998 44444332 89999999876 13333 555443
Q ss_pred ccCChh-----------HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 245 LNWSDE-----------QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 245 h~~~d~-----------~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|||+ -...+|..+++.|+| ||.|.+.
T Consensus 96 --FPDPWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~ 132 (195)
T PF02390_consen 96 --FPDPWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFA 132 (195)
T ss_dssp --S-----SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred --CCCCCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEE
Confidence 4444 124789999999999 9999998
No 132
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.49 E-value=1.1e-06 Score=78.21 Aligned_cols=91 Identities=8% Similarity=0.102 Sum_probs=70.4
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-------C-C-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-------S-G- 235 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-------~-~- 235 (345)
..+.++|||||||+|..+..+++..| +.+++.+|. |+.++.|+ +++++.||+.+.++ . .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 44668999999999999999998865 679999999 77776665 79999999976221 2 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++- -..+.-...+..+.+.|+| ||.|++-
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~~---GG~ii~d 177 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVKV---GGIIAFD 177 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCC---CeEEEEE
Confidence 999874 2334556789999999999 8865443
No 133
>PRK01581 speE spermidine synthase; Validated
Probab=98.49 E-value=4.3e-07 Score=84.53 Aligned_cols=95 Identities=14% Similarity=-0.021 Sum_probs=69.7
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------------CceEEeccCCcCCC---CC-C
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------------CVEHVEGDMFVNVP---SG-Q 236 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------------ri~~~~gd~~~~~p---~~-D 236 (345)
.++++||+||||.|..+..+++..+..+++++|+ |+|++.|+ |++++.+|..+.++ .. |
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4567999999999999999997655578999999 88776433 88899999887332 23 9
Q ss_pred EEEeccccc---cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLL---NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh---~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|++...-. ....--...+++.|++.|+| ||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 999873110 00111125689999999999 9977666
No 134
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.48 E-value=6.1e-07 Score=81.98 Aligned_cols=143 Identities=17% Similarity=0.185 Sum_probs=89.6
Q ss_pred HHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------Cce
Q 044482 154 LFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVE 222 (345)
Q Consensus 154 ~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~ 222 (345)
.|..+-+.-++... .+++.+. ....+|||||||+|.++++.++... .+++++|+ |..++.|+ ++.
T Consensus 139 AFGTG~H~TT~lcl-~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~ 214 (295)
T PF06325_consen 139 AFGTGHHPTTRLCL-ELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIE 214 (295)
T ss_dssp SS-SSHCHHHHHHH-HHHHHHS--STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEE
T ss_pred cccCCCCHHHHHHH-HHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEE
Confidence 35554444444433 3444443 3447999999999999999887643 47999999 77677665 333
Q ss_pred EEeccCCcCCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhh
Q 044482 223 HVEGDMFVNVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVM 300 (345)
Q Consensus 223 ~~~gd~~~~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~ 300 (345)
+ .. ....+++ |+|+.+ ++ .+....++..+.+.|+| ||.+++. -.+..
T Consensus 215 v--~~-~~~~~~~~~dlvvAN-I~----~~vL~~l~~~~~~~l~~---~G~lIlS-GIl~~------------------- 263 (295)
T PF06325_consen 215 V--SL-SEDLVEGKFDLVVAN-IL----ADVLLELAPDIASLLKP---GGYLILS-GILEE------------------- 263 (295)
T ss_dssp E--SC-TSCTCCS-EEEEEEE-S-----HHHHHHHHHHCHHHEEE---EEEEEEE-EEEGG-------------------
T ss_pred E--EE-ecccccccCCEEEEC-CC----HHHHHHHHHHHHHhhCC---CCEEEEc-cccHH-------------------
Confidence 2 21 2233333 888754 32 23446788889999999 9988887 22110
Q ss_pred hhhcCCCccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEc
Q 044482 301 YDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 301 ~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 343 (345)
..+++.+.+++ ||++++........ .+.++|
T Consensus 264 ----------~~~~v~~a~~~-g~~~~~~~~~~~W~-~l~~~K 294 (295)
T PF06325_consen 264 ----------QEDEVIEAYKQ-GFELVEEREEGEWV-ALVFKK 294 (295)
T ss_dssp ----------GHHHHHHHHHT-TEEEEEEEEETTEE-EEEEEE
T ss_pred ----------HHHHHHHHHHC-CCEEEEEEEECCEE-EEEEEe
Confidence 14566778877 99998887765433 344444
No 135
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.47 E-value=4.9e-07 Score=82.23 Aligned_cols=95 Identities=15% Similarity=0.064 Sum_probs=70.5
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCC---CCC-CEEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNV---PSG-QAIF 239 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~---p~~-D~i~ 239 (345)
+++.+||+||||+|.++..+++..+..+++++|+ +.+++.++ |++++.+|.++-+ +.. |+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999999988765678999998 77766544 5778888876622 233 9999
Q ss_pred eccccccCChhH--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVLLNWSDEQ--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+...-+.-+... ....++++++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 876533222222 35788999999999 9987776
No 136
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.46 E-value=5e-07 Score=80.48 Aligned_cols=138 Identities=19% Similarity=0.217 Sum_probs=79.8
Q ss_pred cccceEEecCCccH--HHHHHH-HHCCCCeEEEeeh-hhHhhhCC-------C--ceEEeccCCcC---C--CC--C--C
Q 044482 179 ELKKLVDVASCLGA--NMSLIV-NTYPQITGINFDL-PYVIKNAP-------C--VEHVEGDMFVN---V--PS--G--Q 236 (345)
Q Consensus 179 ~~~~vlDiGgG~G~--~~~~l~-~~~p~~~~~~~Dl-p~~i~~a~-------r--i~~~~gd~~~~---~--p~--~--D 236 (345)
+...+||||||.-+ ..-+++ +..|+.+++-+|. |-++..++ + ..++.+|+.++ + |. + |
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 56789999999653 333444 4589999999999 77788776 4 78999999873 1 11 1 3
Q ss_pred -----EEEeccccccCCh-hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccC
Q 044482 237 -----AIFTKSVLLNWSD-EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGR 310 (345)
Q Consensus 237 -----~i~~~~vlh~~~d-~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r 310 (345)
.+++..+||+.+| ++...+++..+++|.| |+.|.|. ....+..+ .. .....+.+-.... ....|
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~is-h~t~d~~p---~~--~~~~~~~~~~~~~-~~~~R 217 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAIS-HATDDGAP---ER--AEALEAVYAQAGS-PGRPR 217 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEE-EEB-TTSH---HH--HHHHHHHHHHCCS-----B
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEE-ecCCCCCH---HH--HHHHHHHHHcCCC-Cceec
Confidence 6899999999988 6788999999999999 9988888 54432221 11 1112222222222 46789
Q ss_pred CHHHHHHHHHHCCCCceE
Q 044482 311 TAGEFKALAMAAGFGTIK 328 (345)
Q Consensus 311 t~~e~~~ll~~aGf~~~~ 328 (345)
|.+|+.++|. ||+.++
T Consensus 218 s~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 218 SREEIAAFFD--GLELVE 233 (267)
T ss_dssp -HHHHHHCCT--TSEE-T
T ss_pred CHHHHHHHcC--CCccCC
Confidence 9999999998 887653
No 137
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.44 E-value=5.2e-07 Score=78.56 Aligned_cols=97 Identities=19% Similarity=0.270 Sum_probs=72.5
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS- 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~- 234 (345)
...+++.++ .....+|||||||+|+++..++... +.-+++.+|. |.+++.|+ +++++.+|....++.
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 346778887 8888999999999999999999874 4457889998 88777776 789999998876663
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+ |.|++.......+. .+.+.|++ ||++++-
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~---gGrLV~p 171 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKP---GGRLVAP 171 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEE---EEEEEEE
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCC---CcEEEEE
Confidence 3 99999888754433 35567899 9999886
No 138
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.41 E-value=1.2e-06 Score=84.97 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=77.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcC---CCC-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVN---VPS-G 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~---~p~-~ 235 (345)
.++..++ .....+|||+|||+|..+..+++..++.+++++|. +.+++.++ +++++.+|+.+. .+. .
T Consensus 235 ~~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 235 LAATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 3445555 45668999999999999999999998789999999 78877665 467899998762 222 2
Q ss_pred -CEEEecc------ccc-------cCChhH-------HHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 236 -QAIFTKS------VLL-------NWSDEQ-------CLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 236 -D~i~~~~------vlh-------~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
|.|++.- ++. .+..++ ..++|+++.+.|+| ||++++. ..
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvys-tc 373 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYA-TC 373 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE-eC
Confidence 9998422 111 122221 24799999999999 9999988 54
No 139
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.3e-06 Score=73.49 Aligned_cols=95 Identities=14% Similarity=0.224 Sum_probs=77.4
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-C
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS-G 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~-~ 235 (345)
...+++.+. .+...+||+||||+|+.+.-+++.-- +++.+|. ++..+.|+ +|.++.||-..-+|+ +
T Consensus 61 vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 61 VARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 345677777 88889999999999999999998765 7888887 77777776 799999999887774 4
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 --QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 --D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|.|++....-..|+. ..+.|+| ||++++-
T Consensus 138 PyD~I~Vtaaa~~vP~~--------Ll~QL~~---gGrlv~P 168 (209)
T COG2518 138 PYDRIIVTAAAPEVPEA--------LLDQLKP---GGRLVIP 168 (209)
T ss_pred CcCEEEEeeccCCCCHH--------HHHhccc---CCEEEEE
Confidence 999998877655553 4568999 9999988
No 140
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.39 E-value=2.7e-06 Score=82.47 Aligned_cols=108 Identities=16% Similarity=0.177 Sum_probs=78.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------C----ceEEeccCCc-CC--CC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------C----VEHVEGDMFV-NV--PS 234 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------r----i~~~~gd~~~-~~--p~ 234 (345)
.++..++ .....+|||+|||+|..+..+++..++.+++++|. +++++.++ + +.+..+|... +. +.
T Consensus 229 ~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 229 WVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 3445555 55568999999999999999999988789999999 77777655 2 3336677665 22 22
Q ss_pred -C-CEEEec------cccccCCh-------hH-------HHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 235 -G-QAIFTK------SVLLNWSD-------EQ-------CLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 235 -~-D~i~~~------~vlh~~~d-------~~-------~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
. |.|++- .+++..++ ++ ..++|+++++.|+| ||++++. ..-..
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvys-tcs~~ 372 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYA-TCSVL 372 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEE-eCCCC
Confidence 2 999862 45655443 11 25799999999999 9999988 55543
No 141
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.37 E-value=7.9e-06 Score=70.28 Aligned_cols=119 Identities=19% Similarity=0.154 Sum_probs=91.3
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCCCceEEeccCCc-CCCC---C--CEEEeccccccCChh-HHH
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAPCVEHVEGDMFV-NVPS---G--QAIFTKSVLLNWSDE-QCL 253 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~ri~~~~gd~~~-~~p~---~--D~i~~~~vlh~~~d~-~~~ 253 (345)
-++|||||=+...... .++-..++-+|+.+ +.-.+.+.||++ |+|. . |+|.++-||-..+++ +.-
T Consensus 53 lrlLEVGals~~N~~s---~~~~fdvt~IDLns-----~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG 124 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS---TSGWFDVTRIDLNS-----QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRG 124 (219)
T ss_pred ceEEeecccCCCCccc---ccCceeeEEeecCC-----CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHH
Confidence 5899999976654433 45667799999843 123457899999 8882 2 999999999999865 566
Q ss_pred HHHHHHHhhCCCCCCCcE-----EEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceE
Q 044482 254 KILKNCYDALPKSRKHGR-----TQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIK 328 (345)
Q Consensus 254 ~iL~~~~~aL~p~~~gG~-----lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~ 328 (345)
++|+++++.|+| +|. ++|+ +|.. +.. |.+-.+.+.|.++++.-||..++
T Consensus 125 ~Ml~r~~~fL~~---~g~~~~~~LFlV----lP~~------------------Cv~-NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 125 EMLRRAHKFLKP---PGLSLFPSLFLV----LPLP------------------CVT-NSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred HHHHHHHHHhCC---CCccCcceEEEE----eCch------------------Hhh-cccccCHHHHHHHHHhCCcEEEE
Confidence 899999999999 888 7777 2221 122 67777899999999999999988
Q ss_pred EEecC
Q 044482 329 VICRS 333 (345)
Q Consensus 329 ~~~~~ 333 (345)
.....
T Consensus 179 ~~~~~ 183 (219)
T PF11968_consen 179 YKKSK 183 (219)
T ss_pred EEecC
Confidence 76554
No 142
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.37 E-value=1.3e-06 Score=74.75 Aligned_cols=101 Identities=19% Similarity=0.315 Sum_probs=72.6
Q ss_pred HHHHhccCccc--ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--C--ceEEeccCCcCCC--CC--CE
Q 044482 169 KILEIYKGFKE--LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--C--VEHVEGDMFVNVP--SG--QA 237 (345)
Q Consensus 169 ~i~~~~~~~~~--~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--r--i~~~~gd~~~~~p--~~--D~ 237 (345)
..++.++ ++. ..-|||||||+|..+..+.+. +-..+++|+ |+|++.|. . -.++-+||-+.+| +| |.
T Consensus 39 RaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg 115 (270)
T KOG1541|consen 39 RALELLA-LPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDG 115 (270)
T ss_pred HHHHHhh-CCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccce
Confidence 3444444 444 577999999999999887765 357899999 99999887 3 3477888888444 55 87
Q ss_pred EEecccc----c-----cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVL----L-----NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vl----h-----~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++....+ | |-+......++..++..|++ |++.+.-
T Consensus 116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~Q 159 (270)
T KOG1541|consen 116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKR---GARAVLQ 159 (270)
T ss_pred EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhcc---CceeEEE
Confidence 7665444 2 22333445678889999999 8987765
No 143
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.35 E-value=1.8e-06 Score=84.09 Aligned_cols=105 Identities=16% Similarity=0.125 Sum_probs=76.0
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCcC---CCCC
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFVN---VPSG 235 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~---~p~~ 235 (345)
+...++ ..+..+|||+|||+|..+..+++.. |+.+++++|+ +.+++.++ +++++.+|+.+. ++..
T Consensus 242 v~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~ 320 (444)
T PRK14902 242 VAPALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEK 320 (444)
T ss_pred HHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhccc
Confidence 344454 4556789999999999999999986 6789999999 77776554 578999998762 3333
Q ss_pred -CEEEecc------cccc-------CChhH-------HHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 236 -QAIFTKS------VLLN-------WSDEQ-------CLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 236 -D~i~~~~------vlh~-------~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
|+|++.- ++.+ ++..+ ...+|+++.+.|+| ||+++.. ...
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvys-tcs 381 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYS-TCT 381 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEE-cCC
Confidence 9998742 1111 12222 24689999999999 9998876 443
No 144
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.34 E-value=4.6e-06 Score=81.30 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=74.1
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-C-CEEEec--
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS-G-QAIFTK-- 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~-~-D~i~~~-- 241 (345)
.....+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++ +++++.+|+.+..++ . |+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44557899999999999999988754 468999999 77777665 578999998773343 3 999862
Q ss_pred ----ccc-------ccCChhHH-------HHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 242 ----SVL-------LNWSDEQC-------LKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 242 ----~vl-------h~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
.++ +.++.++. .++|+++.+.|+| ||+++.. ....
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvys-tcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYA-TCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEE-eCCC
Confidence 111 23343332 3699999999999 9999988 6544
No 145
>PRK03612 spermidine synthase; Provisional
Probab=98.31 E-value=2e-06 Score=85.34 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=70.3
Q ss_pred ccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC----------------CceEEeccCCcC---CCCC-
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP----------------CVEHVEGDMFVN---VPSG- 235 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~----------------ri~~~~gd~~~~---~p~~- 235 (345)
++.++|||||||+|..+..+++ +|. .+++.+|+ |+|++.++ |++++.+|..+. .++.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 3567999999999999999996 565 68999999 88877543 688899998872 2334
Q ss_pred CEEEeccccccCChh---HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDE---QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~---~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++...-...+.. -..++++++++.|+| ||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence 999887433221111 013589999999999 9988776
No 146
>PHA03412 putative methyltransferase; Provisional
Probab=98.29 E-value=3.5e-06 Score=73.97 Aligned_cols=86 Identities=12% Similarity=0.100 Sum_probs=65.4
Q ss_pred ccceEEecCCccHHHHHHHHHC---CCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC-CEEEeccccccCC-
Q 044482 180 LKKLVDVASCLGANMSLIVNTY---PQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG-QAIFTKSVLLNWS- 248 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~---p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~-D~i~~~~vlh~~~- 248 (345)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.|+ ++.++.+|++. +.... |+|+++=-.+...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 4699999999999999999875 3578999999 78888877 68999999987 43333 9999875544222
Q ss_pred -h--------hHHHHHHHHHHhhCCC
Q 044482 249 -D--------EQCLKILKNCYDALPK 265 (345)
Q Consensus 249 -d--------~~~~~iL~~~~~aL~p 265 (345)
+ .-...+++++.+.+++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~ 155 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ 155 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC
Confidence 1 1234688899886666
No 147
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.29 E-value=3.1e-06 Score=74.41 Aligned_cols=134 Identities=13% Similarity=0.187 Sum_probs=86.0
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC-C--------CceEEeccCCc---CCC-CC--CEEEecccc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA-P--------CVEHVEGDMFV---NVP-SG--QAIFTKSVL 244 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a-~--------ri~~~~gd~~~---~~p-~~--D~i~~~~vl 244 (345)
..+||||||.|.+...+|+++|+..++++++ ..++..+ + ++.++.+|+.+ .++ .+ |-|++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~--- 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN--- 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE---
Confidence 5799999999999999999999999999998 3333322 2 67888898876 233 43 555543
Q ss_pred ccCChh-----------HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhh-hhhccc----hhhhhh-----
Q 044482 245 LNWSDE-----------QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINR-NILTLD----IVMYDL----- 303 (345)
Q Consensus 245 h~~~d~-----------~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~-~~~~~d----~~~~~~----- 303 (345)
|||+ -....|+.+.+.|+| ||.|.+.+|. ++ ...+ ...... +.....
T Consensus 127 --FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aTD~------~~-y~e~~~~~~~~~~~~~~~~~~~~~~~ 194 (227)
T COG0220 127 --FPDPWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFATDN------EE-YFEWMMLEVLEHPPFLKFESEDLHYN 194 (227)
T ss_pred --CCCCCCCccccccccCCHHHHHHHHHHccC---CCEEEEEecC------HH-HHHHHHHHHHhcchhhhccccccccc
Confidence 4444 124689999999999 9999888221 11 1111 000000 000000
Q ss_pred cCCCccCCHHHHHHHHHHCCCCceEE
Q 044482 304 FPQAKGRTAGEFKALAMAAGFGTIKV 329 (345)
Q Consensus 304 ~~~~~~rt~~e~~~ll~~aGf~~~~~ 329 (345)
......+...+|++.....|-.+.+.
T Consensus 195 ~~~~~~~~~T~yE~k~~~~g~~i~~l 220 (227)
T COG0220 195 LPPPDNNPVTEYEQKFRRLGHPVYDL 220 (227)
T ss_pred cccccCCCCcHHHHHHHhCCCceEEE
Confidence 11223466788999999999776554
No 148
>PLN02672 methionine S-methyltransferase
Probab=98.27 E-value=7.1e-06 Score=86.47 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=51.0
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------------------CceEEeccCCcCCCC
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------------------CVEHVEGDMFVNVPS 234 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------------------ri~~~~gd~~~~~p~ 234 (345)
.+|||||||+|..+..+++++|+.+++++|+ |.+++.|+ |++|+.+|+++..+.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~ 199 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD 199 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc
Confidence 5899999999999999999999999999999 77766552 589999999985542
Q ss_pred ---C-CEEEec
Q 044482 235 ---G-QAIFTK 241 (345)
Q Consensus 235 ---~-D~i~~~ 241 (345)
. |+|+.+
T Consensus 200 ~~~~fDlIVSN 210 (1082)
T PLN02672 200 NNIELDRIVGC 210 (1082)
T ss_pred cCCceEEEEEC
Confidence 2 887764
No 149
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.27 E-value=3.5e-06 Score=78.44 Aligned_cols=93 Identities=18% Similarity=0.183 Sum_probs=68.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------------CceEEeccCCc-C----CC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------------CVEHVEGDMFV-N----VP 233 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------------ri~~~~gd~~~-~----~p 233 (345)
...+|||+|||.|.-+....+..+ ...+++|+ +..|+.|+ ...|+.+|.+. . ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 567999999999998887777643 36899999 55566554 34568888875 2 22
Q ss_pred -C--C-CEEEeccccccC--ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 -S--G-QAIFTKSVLLNW--SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 -~--~-D~i~~~~vlh~~--~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. . |+|-|...||+. +.+.+..+|+++.+.|+| ||.+|..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT 185 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGT 185 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 3 2 999999999973 555677799999999999 9988765
No 150
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.25 E-value=4e-06 Score=81.49 Aligned_cols=106 Identities=14% Similarity=0.076 Sum_probs=77.6
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC---------CceEEeccCCc-C----CC
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP---------CVEHVEGDMFV-N----VP 233 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~----~p 233 (345)
+...++ .....+|||+|||+|..+..+++..+ ..+++++|. +++++.++ +++++.+|+.+ + .+
T Consensus 244 ~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 322 (434)
T PRK14901 244 VAPLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQW 322 (434)
T ss_pred HHHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccc
Confidence 334454 45568999999999999999999854 568999998 77776654 57889999876 3 22
Q ss_pred C-C-CEEEec------cccccCCh-------hH-------HHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 234 S-G-QAIFTK------SVLLNWSD-------EQ-------CLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 234 ~-~-D~i~~~------~vlh~~~d-------~~-------~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
. . |.|++. .++++.++ ++ -.++|+++.+.||| ||+++.. +...
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvys-tcsi 387 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYA-TCTL 387 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE-eCCC
Confidence 2 2 999873 34544333 21 25899999999999 9999887 5443
No 151
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.23 E-value=4.4e-06 Score=75.27 Aligned_cols=88 Identities=17% Similarity=0.254 Sum_probs=62.8
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCCC-
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSGQ- 236 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~D- 236 (345)
...+++..+ ..+..+|||||||+|.++..++++.+. ++++|. +.+++.++ +++++.+|+.+ +++..|
T Consensus 18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 445666666 667789999999999999999999875 788887 66665544 68899999988 555323
Q ss_pred -EEEeccccccCChhHHHHHHHHHHh
Q 044482 237 -AIFTKSVLLNWSDEQCLKILKNCYD 261 (345)
Q Consensus 237 -~i~~~~vlh~~~d~~~~~iL~~~~~ 261 (345)
.++++|.-++++.+ ++.++..
T Consensus 95 ~~~vvsNlPy~i~~~----il~~ll~ 116 (253)
T TIGR00755 95 QLKVVSNLPYNISSP----LIFKLLE 116 (253)
T ss_pred cceEEEcCChhhHHH----HHHHHhc
Confidence 45555555555544 4555544
No 152
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.18 E-value=1.2e-05 Score=65.94 Aligned_cols=109 Identities=17% Similarity=0.243 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-C--CC
Q 044482 163 TAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-N--VP 233 (345)
Q Consensus 163 ~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~--~p 233 (345)
+...++.+++.++ +.++.-|+++|.|+|.++.+++++ .++-..+.++. ++-..... .+++++||.+. . +.
T Consensus 33 Ss~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 33 SSILARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG 111 (194)
T ss_pred cHHHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence 4456677888888 888889999999999999999987 45556777776 55544333 67899999987 3 22
Q ss_pred --CC---CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 --SG---QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 --~~---D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+ |.|++.--+-.++-....++|.++...|++ ||.++..
T Consensus 112 e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqf 155 (194)
T COG3963 112 EHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQF 155 (194)
T ss_pred hcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEE
Confidence 22 999999999999999999999999999999 9988888
No 153
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.18 E-value=1.1e-05 Score=78.62 Aligned_cols=97 Identities=9% Similarity=0.106 Sum_probs=66.2
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCC----
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNV---- 232 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~---- 232 (345)
...+++.++ .....+|||+|||+|.++..+++.. .+++++|. +++++.|+ +++++.+|+.+.+
T Consensus 286 ~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 286 VARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 344455554 4455799999999999999999886 57999999 78887665 6899999987522
Q ss_pred -CCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 233 -PSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 233 -p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+++ |+|++.-- -.....+++.+.+ ++| ++.++|.
T Consensus 363 ~~~~~fD~Vi~dPP-----r~g~~~~~~~l~~-~~~---~~ivyvS 399 (443)
T PRK13168 363 WALGGFDKVLLDPP-----RAGAAEVMQALAK-LGP---KRIVYVS 399 (443)
T ss_pred hhcCCCCEEEECcC-----CcChHHHHHHHHh-cCC---CeEEEEE
Confidence 222 88876421 1112344554544 688 6666666
No 154
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.18 E-value=5.4e-06 Score=75.49 Aligned_cols=79 Identities=11% Similarity=0.165 Sum_probs=57.7
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCc-CCCCC--C
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFV-NVPSG--Q 236 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~-~~p~~--D 236 (345)
...+++.++ .....+|||||||+|.++..++++.+ +++++|. +.+++.++ +++++.+|+.+ ++++- +
T Consensus 31 ~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 31 LDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 345666666 66778999999999999999999976 7888888 77777654 78999999987 54432 4
Q ss_pred EEEeccccccCCh
Q 044482 237 AIFTKSVLLNWSD 249 (345)
Q Consensus 237 ~i~~~~vlh~~~d 249 (345)
.|+ .|.=++.+.
T Consensus 108 ~vv-~NlPY~iss 119 (272)
T PRK00274 108 KVV-ANLPYNITT 119 (272)
T ss_pred eEE-EeCCccchH
Confidence 443 444444443
No 155
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.18 E-value=6.1e-06 Score=79.96 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=75.0
Q ss_pred HHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-C-CC-CC-
Q 044482 171 LEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-N-VP-SG- 235 (345)
Q Consensus 171 ~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~-~p-~~- 235 (345)
...++ .....+|||+|||+|..+..+++.. ++.+++.+|+ +.+++.++ +++++.+|..+ + .. ..
T Consensus 230 ~~~l~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 230 PLLME-LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred HHHhC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccC
Confidence 33444 5566799999999999999999886 5679999999 77777655 47888999876 2 22 23
Q ss_pred CEEEec------cccc-------cCChhH-------HHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 236 QAIFTK------SVLL-------NWSDEQ-------CLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 236 D~i~~~------~vlh-------~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
|.|++. .++. .++.++ -.++|.++++.|+| ||.++.. ....
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYs-TCs~ 369 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYS-TCTV 369 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE-ECCC
Confidence 998862 1222 223222 25789999999999 9988777 5443
No 156
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.17 E-value=1.3e-05 Score=74.05 Aligned_cols=109 Identities=12% Similarity=0.076 Sum_probs=79.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCC----CCeEEEeeh-hhHhhhCC-----------CceEEeccCCc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP----QITGINFDL-PYVIKNAP-----------CVEHVEGDMFV 230 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p----~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~ 230 (345)
...|++.++ ...+|||+|||+|.-+..|+++.. ..+.+.+|+ .+.++.+. .|.-+.|||.+
T Consensus 67 ~~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 67 SSDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 446666654 445899999999998877776653 467899999 44554332 34447889866
Q ss_pred C---CC-----CC--CEEEeccccccCChhHHHHHHHHHHh-hCCCCCCCcEEEEEeccCCC
Q 044482 231 N---VP-----SG--QAIFTKSVLLNWSDEQCLKILKNCYD-ALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 231 ~---~p-----~~--D~i~~~~vlh~~~d~~~~~iL~~~~~-aL~p~~~gG~lli~~d~~~~ 281 (345)
. +| .. -++++.+.+.+++++++..+|+++++ .|+| |+.++|--|.+.+
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLiG~D~~k~ 202 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLIGLDGCKD 202 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEEecCCCCC
Confidence 2 22 12 45666789999999999999999999 9999 8888885255433
No 157
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.16 E-value=9.2e-06 Score=73.38 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=60.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCCCE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSGQA 237 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~D~ 237 (345)
...+++.++ .....+|||||||+|.++..++++. .+++++|+ +.+++.++ +++++.+|+++ ++++.|.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 445666665 5667899999999999999999984 47899998 66766554 68999999988 6655577
Q ss_pred EEeccccccCChhH
Q 044482 238 IFTKSVLLNWSDEQ 251 (345)
Q Consensus 238 i~~~~vlh~~~d~~ 251 (345)
|+.+ .-++++.+.
T Consensus 95 Vv~N-lPy~i~s~~ 107 (258)
T PRK14896 95 VVSN-LPYQISSPI 107 (258)
T ss_pred EEEc-CCcccCcHH
Confidence 7654 444555443
No 158
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.15 E-value=2e-05 Score=71.42 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=72.1
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCC--CCCEEEecc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVP--SGQAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p--~~D~i~~~~ 242 (345)
.....+|||+|||+|..+..+++..+ ...++.+|. +.+++.++ +++++.+|... +.+ ..|+|++.-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 34567899999999999999998875 358999999 77776554 57888888755 222 239888621
Q ss_pred ------cc-------ccCChhHH-------HHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 243 ------VL-------LNWSDEQC-------LKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 243 ------vl-------h~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
++ ..|+++.. .++|+++.+.|+| ||+|+.. ....
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYs-tcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYS-TCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE-eCCC
Confidence 22 12444332 4699999999999 9998777 5443
No 159
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=2.4e-05 Score=68.83 Aligned_cols=107 Identities=20% Similarity=0.222 Sum_probs=84.3
Q ss_pred HHHHhhHHH----HHHHHHhccCcccccceEEecCCccHHHHHHHH-HCCCCeEEEeeh-hhHhhhCC----------Cc
Q 044482 158 SMQNHTAIV----MKKILEIYKGFKELKKLVDVASCLGANMSLIVN-TYPQITGINFDL-PYVIKNAP----------CV 221 (345)
Q Consensus 158 ~m~~~~~~~----~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~-~~p~~~~~~~Dl-p~~i~~a~----------ri 221 (345)
.|...++.. +.-|+...+ .....+|+|.|-|+|.++..|+. ..|..+++.+|. ++..+.|+ ++
T Consensus 70 ~~~R~tQiIyPKD~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v 148 (256)
T COG2519 70 SMKRRTQIIYPKDAGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRV 148 (256)
T ss_pred hCcCCCceecCCCHHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccce
Confidence 355544432 345666666 88889999999999999999997 578889999998 66676665 58
Q ss_pred eEEeccCCc-CCCCC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 222 EHVEGDMFV-NVPSG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 222 ~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+..+|+.+ ..++. |++++ +.+++. +.+.++.++|+| ||.+++.
T Consensus 149 ~~~~~Dv~~~~~~~~vDav~L-----Dmp~PW--~~le~~~~~Lkp---gg~~~~y 194 (256)
T COG2519 149 TLKLGDVREGIDEEDVDAVFL-----DLPDPW--NVLEHVSDALKP---GGVVVVY 194 (256)
T ss_pred EEEeccccccccccccCEEEE-----cCCChH--HHHHHHHHHhCC---CcEEEEE
Confidence 888999988 34444 87765 678775 789999999999 9999888
No 160
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.06 E-value=7.1e-06 Score=73.09 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=73.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--Cc-eEEeccCCc-CCCC-C-CEEEeccccccCChhH
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--CV-EHVEGDMFV-NVPS-G-QAIFTKSVLLNWSDEQ 251 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri-~~~~gd~~~-~~p~-~-D~i~~~~vlh~~~d~~ 251 (345)
....++|+|||.|.+. ..+|.+-.++.|+ -..+..++ +. .....|+.+ |.++ . |..+...++|||+-..
T Consensus 45 ~gsv~~d~gCGngky~----~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYL----GVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred CcceeeecccCCcccC----cCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 4578999999999987 3468889999999 66777777 55 678899998 6663 3 9999999999998654
Q ss_pred -HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 252 -CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 252 -~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..++++++.+.++| ||..+|.
T Consensus 121 RR~~~l~e~~r~lrp---gg~~lvy 142 (293)
T KOG1331|consen 121 RRERALEELLRVLRP---GGNALVY 142 (293)
T ss_pred HHHHHHHHHHHHhcC---CCceEEE
Confidence 56799999999999 9986654
No 161
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.04 E-value=1.8e-05 Score=73.23 Aligned_cols=141 Identities=16% Similarity=0.089 Sum_probs=87.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEe----ccCCcCC--CCC--CEE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVE----GDMFVNV--PSG--QAI 238 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~----gd~~~~~--p~~--D~i 238 (345)
...++||||||+|.....++.+.++.+++++|+ |..++.|+ +|++.. .++++.+ +.+ |+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457899999999999999999999999999999 77777665 455543 3444432 332 999
Q ss_pred EeccccccCChhH---HHHHHHHHHh------hC----------CCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchh
Q 044482 239 FTKSVLLNWSDEQ---CLKILKNCYD------AL----------PKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIV 299 (345)
Q Consensus 239 ~~~~vlh~~~d~~---~~~iL~~~~~------aL----------~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~ 299 (345)
+++=-+|.-..+. ..+-.++.++ .| -+ ||.+-++ ..+..+.. .......+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi-~~mi~eS~------~~~~~~gw- 262 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFI-KRMIEESK------AFAKQVLW- 262 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeee-hHhhHHHH------HHHhhCcE-
Confidence 9998887644432 2222333321 22 24 6655555 33333220 01111111
Q ss_pred hhhhcCCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 300 MYDLFPQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 300 ~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
..++ =|+.-+...+.+.|++.|.+.++++..
T Consensus 263 ftsm--v~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 263 FTSL--VSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred EEEE--eeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 1122 244558999999999999988888776
No 162
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.01 E-value=3.4e-05 Score=70.02 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=73.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCC-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSG-Q 236 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~-D 236 (345)
.+++.-.+|.+ +.|||||||+|.++.-.+++. ..++..++-.+|.+.|+ ||.+++|-+.+ ++|+. |
T Consensus 168 Ail~N~sDF~~-kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~D 245 (517)
T KOG1500|consen 168 AILENHSDFQD-KIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVD 245 (517)
T ss_pred HHHhcccccCC-cEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhcc
Confidence 34443222554 679999999999988777664 34788999888887766 89999999998 99965 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEE
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQ 273 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~ll 273 (345)
+++.--.=..+-++...+-.-.+++-|+| .|+.+
T Consensus 246 viISEPMG~mL~NERMLEsYl~Ark~l~P---~GkMf 279 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHARKWLKP---NGKMF 279 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHHHhhcCC---CCccc
Confidence 99876444444555555555567899999 77654
No 163
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.99 E-value=4e-05 Score=69.76 Aligned_cols=106 Identities=12% Similarity=0.206 Sum_probs=74.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCC-eEEEeeh-hhHhhhCC-------CceE--EeccCCc---CCC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQI-TGINFDL-PYVIKNAP-------CVEH--VEGDMFV---NVP 233 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~-------ri~~--~~gd~~~---~~p 233 (345)
.++....++|. +.+|||+|+|.|..+-+..+.+|.+ +++++|. +.+++.++ .... ...++.. +++
T Consensus 23 ~El~~r~p~f~-P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 101 (274)
T PF09243_consen 23 SELRKRLPDFR-PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP 101 (274)
T ss_pred HHHHHhCcCCC-CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC
Confidence 34444444333 4789999999999999999988864 5789998 77777655 1110 1122221 233
Q ss_pred CCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 234 SGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 234 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
..|+|+++|+|-.+++++...+++++.+.+.+ .|+|+ |.=.
T Consensus 102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~-----~LVlV-EpGt 142 (274)
T PF09243_consen 102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP-----VLVLV-EPGT 142 (274)
T ss_pred CCcEEEEehhhhcCCchHHHHHHHHHHHhccC-----cEEEE-cCCC
Confidence 34999999999999998888899998887665 78888 6533
No 164
>PRK04148 hypothetical protein; Provisional
Probab=97.95 E-value=6.7e-05 Score=60.14 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=68.5
Q ss_pred HHHHhccCcccccceEEecCCccH-HHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCcCCC---CC-CEEEe
Q 044482 169 KILEIYKGFKELKKLVDVASCLGA-NMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFVNVP---SG-QAIFT 240 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~-~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~~~p---~~-D~i~~ 240 (345)
.+.+.++ -....+++|||||+|. .+..|.+. +..++++|. |..++.++ .++++.+|.|++-+ .+ |+|+.
T Consensus 7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys 83 (134)
T PRK04148 7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS 83 (134)
T ss_pred HHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE
Confidence 3455555 3344789999999996 77777754 468999999 77787777 78999999999544 34 98887
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.. ++.+...-+.++++...- -++|.
T Consensus 84 ir-----pp~el~~~~~~la~~~~~-----~~~i~ 108 (134)
T PRK04148 84 IR-----PPRDLQPFILELAKKINV-----PLIIK 108 (134)
T ss_pred eC-----CCHHHHHHHHHHHHHcCC-----CEEEE
Confidence 64 456666777777777665 46665
No 165
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.95 E-value=4.8e-05 Score=68.83 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=71.4
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhH-hhhCC---------------CceEEeccCCc-C----C--C-
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYV-IKNAP---------------CVEHVEGDMFV-N----V--P- 233 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~-i~~a~---------------ri~~~~gd~~~-~----~--p- 233 (345)
+....++|+|||-|.-++..-++-- -..+++|+.+| |++|+ ...|+.+|-+. . + +
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 4456899999999998877665532 25899999665 77776 25788998875 1 2 2
Q ss_pred C-CCEEEecccccc-C-ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 S-GQAIFTKSVLLN-W-SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 ~-~D~i~~~~vlh~-~-~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. -|+|-|..++|+ | +.+.+..+|+++.+.|+| ||.+|=.
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FIgT 236 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFIGT 236 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEEEe
Confidence 2 399999999996 4 456688899999999999 9866544
No 166
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.95 E-value=2.2e-05 Score=68.13 Aligned_cols=93 Identities=16% Similarity=0.315 Sum_probs=70.6
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-------CC--
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-------SG-- 235 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-------~~-- 235 (345)
..++++||+||+++|..+..+++..| +.+++.+|. |+..+.|+ ||+++.||..+.++ .+
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 44668999999999999999999987 589999998 76666664 89999999976222 12
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
|+||+-. +..+-...+..+.+.|+| || ++|+ |.+
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~---gg-vii~-DN~ 156 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRP---GG-VIIA-DNV 156 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEE---EE-EEEE-ETT
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccC---Ce-EEEE-ccc
Confidence 9998864 345557789999999999 76 5555 443
No 167
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.93 E-value=3.7e-05 Score=70.56 Aligned_cols=86 Identities=19% Similarity=0.281 Sum_probs=62.6
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~ 234 (345)
...+++..+ .....+|||||||+|.++..++++.. +++++|+ +.+++.++ +++++.+|+++ +++.
T Consensus 25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 25 LDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 345666666 66678999999999999999998754 5788888 66665433 68999999988 5554
Q ss_pred CCEEEeccccccCChhHHHHHH
Q 044482 235 GQAIFTKSVLLNWSDEQCLKIL 256 (345)
Q Consensus 235 ~D~i~~~~vlh~~~d~~~~~iL 256 (345)
-|+++ .+.=++++.+...++|
T Consensus 102 ~d~Vv-aNlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCV-ANVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEE-ecCCcccCcHHHHHHH
Confidence 47665 4555666666555555
No 168
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.93 E-value=4.9e-05 Score=65.72 Aligned_cols=90 Identities=10% Similarity=0.015 Sum_probs=60.3
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC--C--CCEEEecccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP--S--GQAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p--~--~D~i~~~~vl 244 (345)
...+|||+|||+|.++..++.+.. .+++.+|. +..++.++ +++++.+|+++.++ . .|+|++.=-.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 346899999999999997666553 58999998 66666444 68899999987332 2 2999887553
Q ss_pred ccCChhHHHHHHHHHHh--hCCCCCCCcEEEEE
Q 044482 245 LNWSDEQCLKILKNCYD--ALPKSRKHGRTQLR 275 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~ 275 (345)
+.--. ..+++.+.+ .|.| ++.++|-
T Consensus 132 ~~g~~---~~~l~~l~~~~~l~~---~~iv~ve 158 (199)
T PRK10909 132 RKGLL---EETINLLEDNGWLAD---EALIYVE 158 (199)
T ss_pred CCChH---HHHHHHHHHCCCcCC---CcEEEEE
Confidence 32112 234444444 3788 6644444
No 169
>PLN02476 O-methyltransferase
Probab=97.93 E-value=6.1e-05 Score=68.22 Aligned_cols=91 Identities=10% Similarity=0.060 Sum_probs=70.9
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC--------CC-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP--------SG- 235 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p--------~~- 235 (345)
..+.++|||||+++|..+..+++..| +.+++.+|. |+..+.|+ +|+++.||+.+.++ ..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45678999999999999999999876 568899998 66666665 79999999977322 12
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+||+-. +..+-...+..+.+.|+| ||.|++-
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~---GGvIV~D 227 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRV---GGVIVMD 227 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC---CcEEEEe
Confidence 8888753 355667889999999999 8765443
No 170
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.92 E-value=2.7e-05 Score=76.95 Aligned_cols=88 Identities=15% Similarity=0.180 Sum_probs=66.4
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh--hhHhhhCC--------CceEEeccCCc---CCCCC--CEEEecccc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL--PYVIKNAP--------CVEHVEGDMFV---NVPSG--QAIFTKSVL 244 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl--p~~i~~a~--------ri~~~~gd~~~---~~p~~--D~i~~~~vl 244 (345)
...+||||||.|.++..+++++|+..++++|. +.+....+ ++.++.+|+.. .+|++ |.|++.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~--- 424 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL--- 424 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE---
Confidence 46799999999999999999999999999998 33322222 67778777632 45544 666654
Q ss_pred ccCChh-----------HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 245 LNWSDE-----------QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 245 h~~~d~-----------~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|||+ -....|+.+++.|+| ||.|.+.
T Consensus 425 --FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~ 461 (506)
T PRK01544 425 --FPDPWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFA 461 (506)
T ss_pred --CCCCCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEE
Confidence 3333 124789999999999 9999988
No 171
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.91 E-value=4.9e-05 Score=67.71 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=72.6
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVP 233 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p 233 (345)
+..|+..++ ...+.+||+.|-|+|.++..|++. .|.-+++-+|. ++-.+.|+ ++++..+|+.+ .++
T Consensus 29 ~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 29 ISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred HHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 345677777 888899999999999999999975 78899999998 66666555 68999999975 343
Q ss_pred ----CC-CEEEeccccccCChhHHHHHHHHHHhhC-CCCCCCcEEEEE
Q 044482 234 ----SG-QAIFTKSVLLNWSDEQCLKILKNCYDAL-PKSRKHGRTQLR 275 (345)
Q Consensus 234 ----~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL-~p~~~gG~lli~ 275 (345)
.. |+|++ |++++. ..+.++.++| +| ||+|++.
T Consensus 108 ~~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~---gG~i~~f 145 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLPDPW--EAIPHAKRALKKP---GGRICCF 145 (247)
T ss_dssp TT-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EE---EEEEEEE
T ss_pred ccccCcccEEEE-----eCCCHH--HHHHHHHHHHhcC---CceEEEE
Confidence 22 77765 677774 6799999999 89 9999888
No 172
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.87 E-value=3.6e-05 Score=65.19 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=62.8
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC------------CceEEeccCCcCC-----CC-C-CEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP------------CVEHVEGDMFVNV-----PS-G-QAI 238 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~------------ri~~~~gd~~~~~-----p~-~-D~i 238 (345)
....+||+||||+|..++.+++..+..+++.-|.+++++..+ ++++...|.-++. .. . |+|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 355799999999999999999987778899999976665333 5677777765422 22 3 999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+.+.++++ ++....+++.+.+.|+| +|.+++.
T Consensus 124 lasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~ 155 (173)
T PF10294_consen 124 LASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLA 155 (173)
T ss_dssp EEES--S---GGGHHHHHHHHHHHBTT----TTEEEE
T ss_pred EEecccch--HHHHHHHHHHHHHHhCC---CCEEEEE
Confidence 99999975 56678899999999999 7777777
No 173
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.87 E-value=5.3e-05 Score=68.86 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=72.7
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcC---CCCC-CEEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVN---VPSG-QAIF 239 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~---~p~~-D~i~ 239 (345)
++.++||=||||.|.+++.+++..+.-+++.+|+ |.|++.++ |++++.+|..+- .+.. |+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 4457999999999999999999988889999999 99988766 889999998873 3333 9998
Q ss_pred eccccccCChhH---HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVLLNWSDEQ---CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vlh~~~d~~---~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+-..=.. ...+ -...++.|+++|++ +|.++..
T Consensus 155 ~D~tdp~-gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 155 VDSTDPV-GPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred EcCCCCC-CcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 7543221 1100 14789999999999 8865555
No 174
>PLN02823 spermine synthase
Probab=97.87 E-value=4.6e-05 Score=71.14 Aligned_cols=93 Identities=10% Similarity=-0.007 Sum_probs=68.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCCC---CC-CEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNVP---SG-QAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~p---~~-D~i~~ 240 (345)
+.++||-||||.|..+..+++..+..+++++|+ |.+++.++ |++++.+|.++-+. +. |+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 557899999999999999998766678999999 88887665 78899999887332 23 99997
Q ss_pred ccccccCCh--hH---HHHHHH-HHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSD--EQ---CLKILK-NCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d--~~---~~~iL~-~~~~aL~p~~~gG~lli~ 275 (345)
--. .-++. .. -...++ .+++.|+| ||.+++.
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~q 219 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVTQ 219 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCC---CcEEEEe
Confidence 621 11100 00 135777 89999999 9976554
No 175
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.86 E-value=0.00012 Score=63.12 Aligned_cols=137 Identities=17% Similarity=0.150 Sum_probs=90.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC--CEEEeccccccC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG--QAIFTKSVLLNW 247 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~ 247 (345)
.+..++|||||-|+....+..+. --+.+..|. ..|++.++ ..+...+|-.. ++.+. |+++.+..+| |
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH-W 149 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH-W 149 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh-h
Confidence 45689999999999999999886 236788898 67887766 45566677544 55543 9999999997 4
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccC------CHHHHHHHHHH
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGR------TAGEFKALAMA 321 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r------t~~e~~~ll~~ 321 (345)
.++- ..-+.+|..+||| +|.+ |. .++-.+.- . .......+.-+--. ||... -..+.-.+|..
T Consensus 150 ~NdL-Pg~m~~ck~~lKP---Dg~F-ia-smlggdTL----y-ELR~slqLAelER~-GGiSphiSPf~qvrDiG~LL~r 217 (325)
T KOG2940|consen 150 TNDL-PGSMIQCKLALKP---DGLF-IA-SMLGGDTL----Y-ELRCSLQLAELERE-GGISPHISPFTQVRDIGNLLTR 217 (325)
T ss_pred hccC-chHHHHHHHhcCC---Cccc-hh-HHhccccH----H-HHHHHhhHHHHHhc-cCCCCCcChhhhhhhhhhHHhh
Confidence 4432 5678999999999 8744 44 34333321 1 11222233333332 44221 24567889999
Q ss_pred CCCCceEE
Q 044482 322 AGFGTIKV 329 (345)
Q Consensus 322 aGf~~~~~ 329 (345)
|||....+
T Consensus 218 AGF~m~tv 225 (325)
T KOG2940|consen 218 AGFSMLTV 225 (325)
T ss_pred cCccccee
Confidence 99987655
No 176
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.84 E-value=5.8e-05 Score=73.20 Aligned_cols=124 Identities=14% Similarity=0.127 Sum_probs=74.1
Q ss_pred hhhhhccCchhHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHC----CCCeEEEeeh-hhHh
Q 044482 141 DCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTY----PQITGINFDL-PYVI 215 (345)
Q Consensus 141 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~----p~~~~~~~Dl-p~~i 215 (345)
.|+.+++|+...+.|.+|+... ..+..+.-..-.....|+|||||+|-++...+++. -..+++.++- |..+
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~a----l~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~ 227 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEEA----LKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV 227 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHHH----HHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH
T ss_pred cHhhHhcCHHHHHHHHHHHHHH----HHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH
Confidence 4777788888777777775321 12222221101124679999999999987666543 4568899887 3221
Q ss_pred h-------hCC---CceEEeccCCc-CCCCC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcE
Q 044482 216 K-------NAP---CVEHVEGDMFV-NVPSG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGR 271 (345)
Q Consensus 216 ~-------~a~---ri~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~ 271 (345)
. .-. +|+++.+|+.+ ..|.. |+|+.-+.=.....|-....|-...+-|+| ||.
T Consensus 228 ~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp---~Gi 292 (448)
T PF05185_consen 228 VTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP---DGI 292 (448)
T ss_dssp HHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE---EEE
T ss_pred HHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC---CCE
Confidence 1 111 89999999999 77754 998765442222233345668888899999 763
No 177
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.84 E-value=7.9e-05 Score=69.35 Aligned_cols=60 Identities=10% Similarity=0.013 Sum_probs=48.3
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCC--C-CC-CEEEec
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNV--P-SG-QAIFTK 241 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~--p-~~-D~i~~~ 241 (345)
..+|||+|||+|.++..++++ ..+++++|. +.+++.|+ +++|+.+|+.+.. + .. |+|++.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 478999999999999999984 468999999 88887665 5899999997621 2 23 888876
No 178
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.83 E-value=7.7e-05 Score=76.72 Aligned_cols=93 Identities=11% Similarity=0.117 Sum_probs=67.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCC---CCC-CEEEecc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNV---PSG-QAIFTKS 242 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~---p~~-D~i~~~~ 242 (345)
...+|||+|||+|.++..+++. ...+++.+|+ +.+++.++ +++++.+|+++.+ +.. |+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4579999999999999999985 3347999999 77777665 5789999988732 223 9999841
Q ss_pred c--c------ccCC-hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 V--L------LNWS-DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 v--l------h~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
- - ..+. ...-..+++.+.+.|+| ||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 1 0 0011 12235788999999999 9987766
No 179
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.82 E-value=0.0002 Score=63.17 Aligned_cols=143 Identities=17% Similarity=0.074 Sum_probs=79.5
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhh-CC---Cce-EEeccCCc----CCC-C-
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKN-AP---CVE-HVEGDMFV----NVP-S- 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~-a~---ri~-~~~gd~~~----~~p-~- 234 (345)
...+++.++......++||+|||+|.++..++++ +-.+++++|. +.++.. .+ ++. +...|+.. .++ +
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 3455666551124568999999999999999986 4457999999 535442 32 433 23334432 111 1
Q ss_pred --CCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCH
Q 044482 235 --GQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTA 312 (345)
Q Consensus 235 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~ 312 (345)
.|+.+++..+ +|..+.+.|+| +-.++++ .+-..-.+.. ........|- .......
T Consensus 142 ~~~DvsfiS~~~----------~l~~i~~~l~~---~~~~~L~-KPqFE~~~~~--~~~~giv~~~-------~~~~~~~ 198 (228)
T TIGR00478 142 ATFDVSFISLIS----------ILPELDLLLNP---NDLTLLF-KPQFEAGREK--KNKKGVVRDK-------EAIALAL 198 (228)
T ss_pred eeeeEEEeehHh----------HHHHHHHHhCc---CeEEEEc-ChHhhhcHhh--cCcCCeecCH-------HHHHHHH
Confidence 2766666443 58889999998 5444444 2211111100 0000001110 0112235
Q ss_pred HHHHHHHHHCCCCceEEEecC
Q 044482 313 GEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 313 ~e~~~ll~~aGf~~~~~~~~~ 333 (345)
+++...+.+.||++....+.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 199 HKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHHcCCCeEeeEEECC
Confidence 567778888899988776554
No 180
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.81 E-value=1.3e-05 Score=76.74 Aligned_cols=89 Identities=15% Similarity=0.167 Sum_probs=64.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh------hhHhhhCC--CceEEeccCCc---CCCCC--CEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL------PYVIKNAP--CVEHVEGDMFV---NVPSG--QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl------p~~i~~a~--ri~~~~gd~~~---~~p~~--D~i~~~~vlh 245 (345)
..+++||||||.|.++..|+++. ++.+-. +.-+..|. .+--+-+-+-+ |+|+. |+|.|+.++.
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~----V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN----VTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC----ceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccc
Confidence 45789999999999999999885 222222 12222222 34444343322 67754 9999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.|...+ -.+|-++-|+|+| ||.+++.
T Consensus 193 ~W~~~~-g~~l~evdRvLRp---GGyfv~S 218 (506)
T PF03141_consen 193 PWHPND-GFLLFEVDRVLRP---GGYFVLS 218 (506)
T ss_pred cchhcc-cceeehhhhhhcc---CceEEec
Confidence 999887 3689999999999 9988887
No 181
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.79 E-value=0.00016 Score=69.16 Aligned_cols=93 Identities=15% Similarity=0.035 Sum_probs=65.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCC-----CC-C-CEEE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNV-----PS-G-QAIF 239 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~-----p~-~-D~i~ 239 (345)
...+|||+|||+|.++...+.. +..+++.+|+ +.+++.++ +++++.+|+++.+ .. . |+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4579999999999998876643 3458999999 77776555 4679999998732 12 2 9999
Q ss_pred eccccccCCh-------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVLLNWSD-------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vlh~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+.----.-+. ..-..+++.+.+.|+| ||.++.+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~ 338 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTF 338 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEE
Confidence 8633211111 1234566778899999 9998887
No 182
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.77 E-value=0.00027 Score=61.34 Aligned_cols=123 Identities=20% Similarity=0.190 Sum_probs=87.5
Q ss_pred eEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC---CCEEEeccccccCC
Q 044482 183 LVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS---GQAIFTKSVLLNWS 248 (345)
Q Consensus 183 vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~---~D~i~~~~vlh~~~ 248 (345)
|.||||-+|.+...|++...--+++..|+ +.-++.|+ +|++..||=++.++. .|+|++..+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999988778999999 66666655 799999998886663 378877754 4
Q ss_pred hhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceE
Q 044482 249 DEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIK 328 (345)
Q Consensus 249 d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~ 328 (345)
-....+||.+....++. ..++++. | . . ....+++||.+.||.+++
T Consensus 77 G~lI~~ILe~~~~~~~~---~~~lILq-----P-~--------------------~------~~~~LR~~L~~~gf~I~~ 121 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSS---AKRLILQ-----P-N--------------------T------HAYELRRWLYENGFEIID 121 (205)
T ss_dssp HHHHHHHHHHTGGGGTT-----EEEEE-----E-S--------------------S-------HHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHhhHHHhcc---CCeEEEe-----C-C--------------------C------ChHHHHHHHHHCCCEEEE
Confidence 45667899988888777 5677666 1 0 0 256689999999999987
Q ss_pred EEecC--C-ceEEEEEEcC
Q 044482 329 VICRS--Y-CYWVIEFYKP 344 (345)
Q Consensus 329 ~~~~~--~-~~~vi~~~k~ 344 (345)
-.-+. + .+.||.+.+.
T Consensus 122 E~lv~e~~~~YeIi~~~~~ 140 (205)
T PF04816_consen 122 EDLVEENGRFYEIIVAERG 140 (205)
T ss_dssp EEEEEETTEEEEEEEEEES
T ss_pred eEEEeECCEEEEEEEEEeC
Confidence 65542 3 4567777654
No 183
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=6e-05 Score=64.22 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=67.2
Q ss_pred cccccceEEecCCccHHHHHHHHHC--CCCeEEEeeh-hhHhhhCC-------------------CceEEeccCCcCCC-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY--PQITGINFDL-PYVIKNAP-------------------CVEHVEGDMFVNVP- 233 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~-------------------ri~~~~gd~~~~~p- 233 (345)
+....+.||||+|+|.++..++..- |....+++|. |++++.++ +++++.||-..-.+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 4456789999999999999888542 3333488998 88877544 68899999888444
Q ss_pred CC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 SG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 ~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+ |.|++... +.++.++....|+| ||+++|-
T Consensus 160 ~a~YDaIhvGAa--------a~~~pq~l~dqL~~---gGrllip 192 (237)
T KOG1661|consen 160 QAPYDAIHVGAA--------ASELPQELLDQLKP---GGRLLIP 192 (237)
T ss_pred cCCcceEEEccC--------ccccHHHHHHhhcc---CCeEEEe
Confidence 33 99988732 34677888889999 9999887
No 184
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.76 E-value=0.00011 Score=71.58 Aligned_cols=95 Identities=14% Similarity=0.217 Sum_probs=64.0
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCC---C--
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNV---P-- 233 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~---p-- 233 (345)
.+.+.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|+ +++++.+|+.+.+ +
T Consensus 283 ~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 283 RALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred HHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhc
Confidence 3444444 4556799999999999999999875 37899998 88887665 6899999986521 1
Q ss_pred C-C-CEEEeccccccCChhH-HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 S-G-QAIFTKSVLLNWSDEQ-CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 ~-~-D~i~~~~vlh~~~d~~-~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. . |+|++.-- ... ...+++.+. .++| ++.+++.
T Consensus 360 ~~~~D~vi~dPP-----r~G~~~~~l~~l~-~l~~---~~ivyvs 395 (431)
T TIGR00479 360 GQIPDVLLLDPP-----RKGCAAEVLRTII-ELKP---ERIVYVS 395 (431)
T ss_pred CCCCCEEEECcC-----CCCCCHHHHHHHH-hcCC---CEEEEEc
Confidence 1 2 88876321 111 134555554 4788 7654444
No 185
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=6.4e-05 Score=63.21 Aligned_cols=65 Identities=17% Similarity=0.072 Sum_probs=49.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCCCCEEEecccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPSGQAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~~D~i~~~~vl 244 (345)
..++|+|+|||+|.++...+-..|. +++++|+ |+.++.++ +++|+..|..+.-..-|.++++--+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPF 118 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPF 118 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCC
Confidence 3478999999999999998876654 7899998 88887766 6889999886533233777776444
No 186
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.00021 Score=62.39 Aligned_cols=100 Identities=19% Similarity=0.278 Sum_probs=77.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCC----CeEEEeeh-hhHhhhCC----------CceEEeccCCc---CCCC-C--CE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQ----ITGINFDL-PYVIKNAP----------CVEHVEGDMFV---NVPS-G--QA 237 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~----~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~---~~p~-~--D~ 237 (345)
+..+++|+|.|+..-++.+++.+-+ ++.+-+|+ ..+++... .+.-+.+|+.. .+|. + =.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 4578999999999999999988766 78899998 44443211 46667788865 3443 3 46
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
+++...|.++++++|..+|.+++.+|.| |-.+++--|...+
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~LlGvDl~k~ 198 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLLGVDLRKP 198 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCC---cceEEEeccccCH
Confidence 7788999999999999999999999999 8888775354443
No 187
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.70 E-value=0.00014 Score=63.45 Aligned_cols=96 Identities=13% Similarity=0.138 Sum_probs=75.2
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEe-ccCCcCC---C-CC-CEE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVE-GDMFVNV---P-SG-QAI 238 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~-gd~~~~~---p-~~-D~i 238 (345)
.++.++||+||.+.|..+..++...| +.+.+.+|. |+..+.|+ +|+++. ||..+-+ . .. |+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 45778999999999999999999999 789999999 88887776 688888 5887622 2 22 999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
|+- -...+-...|..+.+.|+| || ++|. |.+...
T Consensus 137 FID-----adK~~yp~~le~~~~lLr~---GG-liv~-DNvl~~ 170 (219)
T COG4122 137 FID-----ADKADYPEYLERALPLLRP---GG-LIVA-DNVLFG 170 (219)
T ss_pred EEe-----CChhhCHHHHHHHHHHhCC---Cc-EEEE-eecccC
Confidence 875 3444557889999999999 76 6666 555543
No 188
>PRK00536 speE spermidine synthase; Provisional
Probab=97.64 E-value=0.00019 Score=64.47 Aligned_cols=85 Identities=12% Similarity=0.036 Sum_probs=63.8
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCCC-CC-CEEEe
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNVP-SG-QAIFT 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~p-~~-D~i~~ 240 (345)
-+++++||=||||.|..++++++. |. +++.+|+ ++|++.++ |++++.. +.... +. |+|++
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~--~~~~~~~~fDVIIv 145 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ--LLDLDIKKYDLIIC 145 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh--hhhccCCcCCEEEE
Confidence 346789999999999999999975 55 8999999 88887666 7777752 32222 33 99987
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
-.. .+ ....+.|+++|+| ||.++..
T Consensus 146 Ds~----~~---~~fy~~~~~~L~~---~Gi~v~Q 170 (262)
T PRK00536 146 LQE----PD---IHKIDGLKRMLKE---DGVFISV 170 (262)
T ss_pred cCC----CC---hHHHHHHHHhcCC---CcEEEEC
Confidence 643 22 3568999999999 8866554
No 189
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.64 E-value=6.1e-05 Score=67.45 Aligned_cols=95 Identities=15% Similarity=0.135 Sum_probs=69.9
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCc---CCCC-C-CEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFV---NVPS-G-QAI 238 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~---~~p~-~-D~i 238 (345)
++.++||=||+|.|..+..+++..+..+++++|+ |.|++.++ |++++.+|... ..++ . |+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3668999999999999999997766678999999 88888765 78999999876 3334 4 988
Q ss_pred EeccccccCChhH--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 239 FTKSVLLNWSDEQ--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 239 ~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++-..--.-+... ....++.+++.|+| ||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~ 190 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQ 190 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEE
Confidence 8743321111111 24689999999999 9977776
No 190
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.60 E-value=0.00092 Score=58.06 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=86.9
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCc---CCCCC--CEEE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFV---NVPSG--QAIF 239 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~---~~p~~--D~i~ 239 (345)
-+...+|||...|-|+++++-+++- ...++-++- |.|++.|. +|+.+.||..+ .+++. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 3467899999999999999988874 236666666 88988776 68999999987 45543 8764
Q ss_pred eccccccCCh------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHH
Q 044482 240 TKSVLLNWSD------EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAG 313 (345)
Q Consensus 240 ~~~vlh~~~d------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~ 313 (345)
|+=|. --..++-+++++.|+| ||+++=- - .++.. ...-.| -..
T Consensus 211 -----HDPPRfS~AgeLYseefY~El~RiLkr---gGrlFHY-v---G~Pg~------ryrG~d-------------~~~ 259 (287)
T COG2521 211 -----HDPPRFSLAGELYSEEFYRELYRILKR---GGRLFHY-V---GNPGK------RYRGLD-------------LPK 259 (287)
T ss_pred -----eCCCccchhhhHhHHHHHHHHHHHcCc---CCcEEEE-e---CCCCc------ccccCC-------------hhH
Confidence 43111 1235789999999999 9998655 1 11110 011112 145
Q ss_pred HHHHHHHHCCCCceEEEecC
Q 044482 314 EFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~~ 333 (345)
...+.|+++||.+++.....
T Consensus 260 gVa~RLr~vGF~~v~~~~~~ 279 (287)
T COG2521 260 GVAERLRRVGFEVVKKVREA 279 (287)
T ss_pred HHHHHHHhcCceeeeeehhc
Confidence 67899999999987766543
No 191
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.57 E-value=0.00029 Score=62.93 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=72.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC---------CC
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP---------SG 235 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p---------~~ 235 (345)
..+.++||+||.++|..+..+++..| +.+++.+|. |+..+.|+ +|+++.||+.+.++ ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 44568999999999999999998864 678999998 66666554 89999999877322 12
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
|+||+-. +...-...+..+.+.|+| || ++|+ |.++-
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~---GG-viv~-DNvl~ 193 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKV---GG-VIGY-DNTLW 193 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCC---Ce-EEEE-cCCCC
Confidence 8888753 345567788999999999 77 5666 55543
No 192
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.52 E-value=0.00031 Score=66.96 Aligned_cols=86 Identities=7% Similarity=-0.051 Sum_probs=58.4
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC---C-CCEEEeccccc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP---S-GQAIFTKSVLL 245 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p---~-~D~i~~~~vlh 245 (345)
..+|||+|||+|.++..++.. ..+++++|. +..++.++ +++|+.+|+.+..+ . .|+|++.=---
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 468999999999999999864 468999998 77777655 58899999876222 2 38888752211
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+. .++++.+. .++| ++-++|.
T Consensus 312 G~~----~~~l~~l~-~~~p---~~ivyvs 333 (374)
T TIGR02085 312 GIG----KELCDYLS-QMAP---KFILYSS 333 (374)
T ss_pred CCc----HHHHHHHH-hcCC---CeEEEEE
Confidence 111 23444443 4788 6655555
No 193
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.45 E-value=0.00026 Score=65.11 Aligned_cols=90 Identities=13% Similarity=0.048 Sum_probs=65.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCC-CC-CEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVP-SG-QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p-~~-D~i~~~~vlh 245 (345)
..++|||||||+|.++.--+++. ..+++++|-.++++.|. .|+++.|.+.+ .+| +. |+|+.-|.=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 34899999999999999888887 56899999988877665 59999999988 788 55 9998766543
Q ss_pred cCChh-HHHHHHHHHHhhCCCCCCCcEE
Q 044482 246 NWSDE-QCLKILKNCYDALPKSRKHGRT 272 (345)
Q Consensus 246 ~~~d~-~~~~iL~~~~~aL~p~~~gG~l 272 (345)
.+--+ -...+|-.=-+.|+| ||.+
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~---~G~i 163 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKE---GGLI 163 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCC---CceE
Confidence 33222 222333333467899 8854
No 194
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.43 E-value=0.00025 Score=64.87 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=51.2
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC-------CceEEeccCCc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP-------CVEHVEGDMFV 230 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~ 230 (345)
..++++.+. ......+||.+||.|..+..+++..| +.+++++|. |++++.++ |++++.+||.+
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 346677765 45567999999999999999999986 789999999 88887765 57777777764
No 195
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.37 E-value=0.00044 Score=63.66 Aligned_cols=88 Identities=18% Similarity=0.274 Sum_probs=68.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCC-eEEEeeh-hhHhhhCC----------------CceEEeccCCcCCCC---C-C
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQI-TGINFDL-PYVIKNAP----------------CVEHVEGDMFVNVPS---G-Q 236 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~----------------ri~~~~gd~~~~~p~---~-D 236 (345)
+.+++|-+|||.|.-+++++ +||+. +++.+|+ |.|++.++ |++++..|.++-+.. . |
T Consensus 289 ~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 45789999999999999987 68864 7899999 99999776 899999999984442 2 6
Q ss_pred EEEeccccccCChhH--------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLLNWSDEQ--------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~--------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+++. +++|+. ..++-+-.++.|++ +|.+++.
T Consensus 368 ~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQ 406 (508)
T COG4262 368 VVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQ 406 (508)
T ss_pred EEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEEe
Confidence 6654 555552 23566778899999 8877776
No 196
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.36 E-value=0.00055 Score=60.77 Aligned_cols=65 Identities=23% Similarity=0.303 Sum_probs=47.6
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEE----eccCCcCCC--CC--CE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHV----EGDMFVNVP--SG--QA 237 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~----~gd~~~~~p--~~--D~ 237 (345)
+.....++|+|||+|..+..++..-|+.+++.+|. +..+..|. |+.++ ..|.+.+.+ .+ |+
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence 33445799999999999999999999999999999 44444332 67777 445555433 34 77
Q ss_pred EEec
Q 044482 238 IFTK 241 (345)
Q Consensus 238 i~~~ 241 (345)
++++
T Consensus 226 lvsN 229 (328)
T KOG2904|consen 226 LVSN 229 (328)
T ss_pred EecC
Confidence 7765
No 197
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.35 E-value=0.00029 Score=59.75 Aligned_cols=92 Identities=10% Similarity=0.137 Sum_probs=62.4
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhh-------hCC---------CceEEeccCCcCCCCC-CEEEecc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIK-------NAP---------CVEHVEGDMFVNVPSG-QAIFTKS 242 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~-------~a~---------ri~~~~gd~~~~~p~~-D~i~~~~ 242 (345)
..+.|||||.|.++..|...||+--++++++ -.|.+ ..+ ++.+...+.+.-+|+- .--.++-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 4689999999999999999999998999988 33322 111 5777777766655521 1111222
Q ss_pred ccccCChhH-----------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VLLNWSDEQ-----------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh~~~d~~-----------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.++-++|+. +..++.+..-.|++ ||.++.+
T Consensus 142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~yti 182 (249)
T KOG3115|consen 142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTI 182 (249)
T ss_pred ceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEE
Confidence 222334432 24678888889999 9999988
No 198
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.35 E-value=0.00059 Score=55.66 Aligned_cols=81 Identities=16% Similarity=0.187 Sum_probs=56.3
Q ss_pred cccccceEEecCCccHHHHHHHHH----CCCCeEEEeeh-hhHhhhCC------------CceEEeccCCcC-CCCC-CE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNT----YPQITGINFDL-PYVIKNAP------------CVEHVEGDMFVN-VPSG-QA 237 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~----~p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~~-~p~~-D~ 237 (345)
-.+..+|+|+|||.|+++..++.. .|+++++++|. ++.++.+. ++++..++..+. .... ++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 356689999999999999999982 37899999998 55555444 456666655442 2233 77
Q ss_pred EEeccccccCChhHHHHHHHHHHh
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYD 261 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~ 261 (345)
++--|..-++++. +|+...+
T Consensus 103 ~vgLHaCG~Ls~~----~l~~~~~ 122 (141)
T PF13679_consen 103 LVGLHACGDLSDR----ALRLFIR 122 (141)
T ss_pred EEEeecccchHHH----HHHHHHH
Confidence 7777777777664 4554444
No 199
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.00043 Score=55.56 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=51.3
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCC-eEEEeeh-hhHhhhCC--------CceEEeccCCcCCCC-C--
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQI-TGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPS-G-- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~-~-- 235 (345)
.|-+.|+++. +.+++|+|||.|.+. ++-.+|.. .++++|+ |+.++.+. ++.+.+.|+.++.+. +
T Consensus 39 ~Ih~TygdiE-gkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~f 115 (185)
T KOG3420|consen 39 TIHNTYGDIE-GKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIF 115 (185)
T ss_pred HHHhhhcccc-CcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeE
Confidence 3445565343 478999999999999 44456655 5899999 88888665 677888888875553 3
Q ss_pred CEEEecccc
Q 044482 236 QAIFTKSVL 244 (345)
Q Consensus 236 D~i~~~~vl 244 (345)
|..+++--+
T Consensus 116 DtaviNppF 124 (185)
T KOG3420|consen 116 DTAVINPPF 124 (185)
T ss_pred eeEEecCCC
Confidence 666665444
No 200
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.30 E-value=0.0037 Score=56.45 Aligned_cols=142 Identities=12% Similarity=0.066 Sum_probs=92.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC------------CceEEeccCCcCCC----------CC-
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP------------CVEHVEGDMFVNVP----------SG- 235 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~------------ri~~~~gd~~~~~p----------~~- 235 (345)
+...||.+|||-=+-.-.+... ++++++-+|+|++++..+ +..++..|+.+.+. +.
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 4567999999998877766322 258899999999876322 67889999863221 12
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhh-hc--CCCccCCH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYD-LF--PQAKGRTA 312 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~-~~--~~~~~rt~ 312 (345)
-++++-.++.+++.+++.++|+.+.+...| |+.|+ . |.+.+-..... ......... ... .. +--...+.
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~---gs~l~-~-d~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~ 231 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAP---GSRLA-F-DYVRPLDGEWR-AGMRAPVYH--AARGVDGSGLVFGIDR 231 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCC---CcEEE-E-EeccccchhHH-HHHHHHHHH--hhhcccccccccCCCh
Confidence 578888999999999999999999998888 76554 5 56544111100 000000000 000 00 00012467
Q ss_pred HHHHHHHHHCCCCceEE
Q 044482 313 GEFKALAMAAGFGTIKV 329 (345)
Q Consensus 313 ~e~~~ll~~aGf~~~~~ 329 (345)
++..++|++.||+....
T Consensus 232 ~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 232 ADVAEWLAERGWRASEH 248 (260)
T ss_pred hhHHHHHHHCCCeeecC
Confidence 89999999999998665
No 201
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.0015 Score=58.44 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=63.2
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh--hhHhh-hC---CCceEEeccCCc-CCCC--CCE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL--PYVIK-NA---PCVEHVEGDMFV-NVPS--GQA 237 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl--p~~i~-~a---~ri~~~~gd~~~-~~p~--~D~ 237 (345)
.+.|++..+ .....+|++||+|.|.++..|+++...+.++-+|. -+.+. .. .+++++.||+++ ++|+ .-.
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~ 97 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPY 97 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCC
Confidence 556777776 55578999999999999999999988766666663 22222 21 189999999999 7875 333
Q ss_pred EEeccccccCChhHHHHHHHH
Q 044482 238 IFTKSVLLNWSDEQCLKILKN 258 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~ 258 (345)
.+.+|+=++.+-+-..++|..
T Consensus 98 ~vVaNlPY~Isspii~kll~~ 118 (259)
T COG0030 98 KVVANLPYNISSPILFKLLEE 118 (259)
T ss_pred EEEEcCCCcccHHHHHHHHhc
Confidence 444555566666554444443
No 202
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.26 E-value=0.00073 Score=59.95 Aligned_cols=71 Identities=13% Similarity=0.271 Sum_probs=54.7
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~ 234 (345)
...|++.-+ ......||+||.|+|.++..++++-. +++.++. |.|++..+ +.+++.||+++ ++|-
T Consensus 47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~ 123 (315)
T KOG0820|consen 47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPR 123 (315)
T ss_pred HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcc
Confidence 445666666 77888999999999999999999864 5666666 66665433 78999999999 8885
Q ss_pred CCEEEe
Q 044482 235 GQAIFT 240 (345)
Q Consensus 235 ~D~i~~ 240 (345)
-|.++.
T Consensus 124 fd~cVs 129 (315)
T KOG0820|consen 124 FDGCVS 129 (315)
T ss_pred cceeec
Confidence 565544
No 203
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.24 E-value=0.00032 Score=62.72 Aligned_cols=91 Identities=13% Similarity=0.005 Sum_probs=59.1
Q ss_pred EEeccCCcC--C------CC-CCEEEeccccccC--ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhh
Q 044482 223 HVEGDMFVN--V------PS-GQAIFTKSVLLNW--SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINR 291 (345)
Q Consensus 223 ~~~gd~~~~--~------p~-~D~i~~~~vlh~~--~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~ 291 (345)
++..|.+++ + |+ .|++++..+|.-- +.++-.+.++++.+.||| ||.|++. ...-... .
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~-~~l~~t~----Y--- 206 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILA-GVLGSTY----Y--- 206 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEE-EESS-SE----E---
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEE-EEcCcee----E---
Confidence 667888872 2 22 4999999999643 345678999999999999 9999998 5532210 0
Q ss_pred hhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEe
Q 044482 292 NILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVIC 331 (345)
Q Consensus 292 ~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~ 331 (345)
..-...+..+ ..+++.+++.|+++||.+.+...
T Consensus 207 ~vG~~~F~~l-------~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 207 MVGGHKFPCL-------PLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp EETTEEEE----------B-HHHHHHHHHHTTEEEEEEEG
T ss_pred EECCEecccc-------cCCHHHHHHHHHHcCCEEEeccc
Confidence 0000011111 24689999999999999888774
No 204
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.24 E-value=0.00077 Score=57.87 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=58.4
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcC---CC---CC-CEEEec
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVN---VP---SG-QAIFTK 241 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~---~p---~~-D~i~~~ 241 (345)
..++||++||+|.++.+++.+... +++.+|. +..++.++ +++++.+|+++. .. .. |+|++-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 468999999999999999998753 7899998 55555443 578999999662 21 12 777664
Q ss_pred cccccCChhHHHHHHHHHHh--hCCCCCCCcEEEEEeccC
Q 044482 242 SVLLNWSDEQCLKILKNCYD--ALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~~d~~ 279 (345)
=-...-.. ..++..+.+ .|++ +| ++|+ |.-
T Consensus 129 PPy~~~~~---~~~l~~l~~~~~l~~---~~-iiv~-E~~ 160 (189)
T TIGR00095 129 PPFFNGAL---QALLELCENNWILED---TV-LIVV-EED 160 (189)
T ss_pred cCCCCCcH---HHHHHHHHHCCCCCC---Ce-EEEE-Eec
Confidence 33322112 234444433 4666 55 5666 543
No 205
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.23 E-value=0.0031 Score=53.32 Aligned_cols=137 Identities=15% Similarity=0.093 Sum_probs=87.3
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeehhhHh-----h------hCC-----CceEEeccCCc-CCCCC-CE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDLPYVI-----K------NAP-----CVEHVEGDMFV-NVPSG-QA 237 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i-----~------~a~-----ri~~~~gd~~~-~~p~~-D~ 237 (345)
+....+|+|+=-|.|.+++-+...- |.-.+..+--.+.. + .++ +.+.+..+... ..|+. |+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 5567899999999999999888753 44333332222221 1 111 56666666555 43455 88
Q ss_pred EEeccccccC-----ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCH
Q 044482 238 IFTKSVLLNW-----SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTA 312 (345)
Q Consensus 238 i~~~~vlh~~-----~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~ 312 (345)
++....-|++ ....+.++.+.++++||| ||.++|. |.......... |-. .-.-++.
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~-dH~a~pG~~~~---------dt~------~~~ri~~ 186 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVE-DHRADPGSGLS---------DTI------TLHRIDP 186 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEE-eccccCCCChh---------hhh------hhcccCh
Confidence 8876555543 345678899999999999 9999999 88765432211 100 0112346
Q ss_pred HHHHHHHHHCCCCceEEEec
Q 044482 313 GEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 313 ~e~~~ll~~aGf~~~~~~~~ 332 (345)
.-..+-.+++||+..--..+
T Consensus 187 a~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 187 AVVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHHHhhcceeeeeehh
Confidence 77888999999987654433
No 206
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0004 Score=63.61 Aligned_cols=105 Identities=14% Similarity=0.247 Sum_probs=69.8
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCe-EEEeeh-hhHhhhC----C-----CceEEeccCCc---CCCCC
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQIT-GINFDL-PYVIKNA----P-----CVEHVEGDMFV---NVPSG 235 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~-~~~~Dl-p~~i~~a----~-----ri~~~~gd~~~---~~p~~ 235 (345)
+....++|+. ++|||||.|.|.-+-++-.-+|+++ +++++. |.+-+.. . +...-..|+.. ++|.+
T Consensus 105 L~~~~~dfap-qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a 183 (484)
T COG5459 105 LQKRVPDFAP-QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA 183 (484)
T ss_pred HHHhCCCcCc-chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc
Confidence 3333443443 6799999999999999999999985 566666 3322111 1 22223344443 55656
Q ss_pred CEEEeccccccCChhHH----HHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 236 QAIFTKSVLLNWSDEQC----LKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~----~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
|.|.+..++|.+-++.. ...+++....+.| ||.|+|+ |.-
T Consensus 184 d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~---gg~lViv-ErG 227 (484)
T COG5459 184 DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAP---GGHLVIV-ERG 227 (484)
T ss_pred ceeehhhhhhhhccccCcchHHHHHHHHHHhccC---CCeEEEE-eCC
Confidence 88777777766544433 3489999999999 9999999 653
No 207
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0068 Score=50.74 Aligned_cols=63 Identities=11% Similarity=0.231 Sum_probs=49.1
Q ss_pred ccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCC-CC-CEEEecc
Q 044482 180 LKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVP-SG-QAIFTKS 242 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p-~~-D~i~~~~ 242 (345)
..-+++||||+|..+..+++. -|+......|+ |+.++... ++..+..|+++.+- .. |+.+++-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECC
Confidence 578999999999999998886 47788899999 77666533 67888899988443 33 8887763
No 208
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.0033 Score=54.07 Aligned_cols=105 Identities=16% Similarity=0.148 Sum_probs=74.4
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeehhhHhhhCCCceEEeccCCc-CC--------CC-C
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDLPYVIKNAPCVEHVEGDMFV-NV--------PS-G 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dlp~~i~~a~ri~~~~gd~~~-~~--------p~-~ 235 (345)
...+.+.+.-+.+..+|+|+|+-.|.+++.++++-. ..+++++|+.++-... ++.++++|++. +. +. .
T Consensus 33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~-~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP-GVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC-CceEEeeeccCccHHHHHHHHcCCCC
Confidence 446667776577788999999999999999998754 4569999986654443 59999999987 32 21 2
Q ss_pred -CEEEe---ccccccCChh------HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFT---KSVLLNWSDE------QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~---~~vlh~~~d~------~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++ .++--+|+-+ -+...+.-+...|+| ||.+++-
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K 158 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAK 158 (205)
T ss_pred cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEE
Confidence 77773 2232233322 345567777889999 9988877
No 209
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.19 E-value=0.0012 Score=56.29 Aligned_cols=85 Identities=18% Similarity=0.139 Sum_probs=65.4
Q ss_pred ceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhH---hhhCC------CceEEeccCCc-CCCCC-CEEEeccccccCCh
Q 044482 182 KLVDVASCLGANMSLIVNTYPQITGINFDL-PYV---IKNAP------CVEHVEGDMFV-NVPSG-QAIFTKSVLLNWSD 249 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~---i~~a~------ri~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d 249 (345)
+++|||.|.|.-++.++=.+|+++++.+|. ..- ++.+. +++++.+.+.+ ..+.. |+|+++.+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS-----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc-----
Confidence 799999999999999999999999999997 221 22222 78899998877 33333 999999775
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
....+++-+...+++ ||+++..
T Consensus 126 -~l~~l~~~~~~~l~~---~G~~l~~ 147 (184)
T PF02527_consen 126 -PLDKLLELARPLLKP---GGRLLAY 147 (184)
T ss_dssp -SHHHHHHHHGGGEEE---EEEEEEE
T ss_pred -CHHHHHHHHHHhcCC---CCEEEEE
Confidence 124678888899999 9998888
No 210
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.14 E-value=0.00075 Score=57.43 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=62.6
Q ss_pred HHHHHhccCcc--cccceEEecCCccHHHHHHHHHC-CCCeEEEeehhhHhhhCCCceEEeccCCcC---------CC--
Q 044482 168 KKILEIYKGFK--ELKKLVDVASCLGANMSLIVNTY-PQITGINFDLPYVIKNAPCVEHVEGDMFVN---------VP-- 233 (345)
Q Consensus 168 ~~i~~~~~~~~--~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~ri~~~~gd~~~~---------~p-- 233 (345)
.++.+.++-+. ...++||+||++|.++..++++. +..+++++|+..+-+. +.+.++.+|+.++ .+
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-QNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS--TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-cceeeeecccchhhHHHhhhhhcccc
Confidence 35566665233 34899999999999999999987 7789999999555221 3455555665431 11
Q ss_pred -CC-CEEEecccc---ccC--C----hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 -SG-QAIFTKSVL---LNW--S----DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 -~~-D~i~~~~vl---h~~--~----d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.. |+|++--.. .++ + -+.+...|.-+.+.|+| ||.+++-
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K 138 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIK 138 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEE
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEE
Confidence 13 888775422 111 1 11233444455567899 9987776
No 211
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.11 E-value=0.0013 Score=59.45 Aligned_cols=90 Identities=18% Similarity=0.274 Sum_probs=62.2
Q ss_pred HHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCC-
Q 044482 165 IVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPS- 234 (345)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~- 234 (345)
..++.+++.++ ......|||||+|.|.++..|++.. .++++++. +..++..+ +++++.+|+++ ..+.
T Consensus 17 ~~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 17 NIADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 34567778777 7778899999999999999999998 56677776 44433221 89999999998 5554
Q ss_pred ---CCEEEeccccccCChhHHHHHHHHHHh
Q 044482 235 ---GQAIFTKSVLLNWSDEQCLKILKNCYD 261 (345)
Q Consensus 235 ---~D~i~~~~vlh~~~d~~~~~iL~~~~~ 261 (345)
..+.++.++=++.+. .++.++..
T Consensus 94 ~~~~~~~vv~NlPy~is~----~il~~ll~ 119 (262)
T PF00398_consen 94 LKNQPLLVVGNLPYNISS----PILRKLLE 119 (262)
T ss_dssp CSSSEEEEEEEETGTGHH----HHHHHHHH
T ss_pred hcCCceEEEEEecccchH----HHHHHHhh
Confidence 345555555444333 45666655
No 212
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.10 E-value=0.003 Score=53.73 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=66.5
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCe---------EEEeeh-hhHhhhCC----------CceEEeccC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQIT---------GINFDL-PYVIKNAP----------CVEHVEGDM 228 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~---------~~~~Dl-p~~i~~a~----------ri~~~~gd~ 228 (345)
.++..-. |.....|+|-=||+|+++++.+...++.. +++.|. +.+++.++ .+.+...|+
T Consensus 19 ~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 19 ALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 3444444 77778999999999999999887776666 899998 77777665 578999999
Q ss_pred Cc-CCCCC--CEEEecccccc-CCh-hH----HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 229 FV-NVPSG--QAIFTKSVLLN-WSD-EQ----CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 229 ~~-~~p~~--D~i~~~~vlh~-~~d-~~----~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+ +++++ |+|++.--.-. ... .+ -..+++++.+.+++ ...+++.
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~---~~v~l~~ 150 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP---RAVFLTT 150 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT---CEEEEEE
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC---CEEEEEE
Confidence 98 64543 99988644322 121 11 23567888888888 5444444
No 213
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.05 E-value=0.021 Score=51.48 Aligned_cols=131 Identities=15% Similarity=0.078 Sum_probs=87.0
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeehh-hH-------hhh---CC----------------------------
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDLP-YV-------IKN---AP---------------------------- 219 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp-~~-------i~~---a~---------------------------- 219 (345)
+..+||==|||-|.++-.++++. -.+.+.+.. .| +.. ..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 34689999999999999999983 344555542 22 111 00
Q ss_pred -----------CceEEeccCCc-CCCC---C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 220 -----------CVEHVEGDMFV-NVPS---G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 220 -----------ri~~~~gd~~~-~~p~---~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
+++...|||.+ .-++ + |+|+....+ | +-+....-|+.|++.||| ||..|=+ -+++-.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-D-TA~Ni~~Yi~tI~~lLkp---gG~WIN~-GPLlyh 207 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-D-TAENIIEYIETIEHLLKP---GGYWINF-GPLLYH 207 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-e-chHHHHHHHHHHHHHhcc---CCEEEec-CCcccc
Confidence 57889999998 3223 3 998888666 2 344568899999999999 9844444 332221
Q ss_pred CCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEe
Q 044482 283 SPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVIC 331 (345)
Q Consensus 283 ~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~ 331 (345)
.. +.. ......-+.+.+|+.+++++.||++++...
T Consensus 208 ~~------------~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 208 FE------------PMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CC------------CCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 10 100 000123678999999999999999987654
No 214
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.02 E-value=0.00041 Score=57.70 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=43.3
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCC---C--C-CCEEEec
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNV---P--S-GQAIFTK 241 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~---p--~-~D~i~~~ 241 (345)
.+|+|+.||.|..++++++.++ +++.+|+ |..++.++ ||.++.||+++.. . . .|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 3699999999999999999986 4788887 66676665 8999999999832 2 1 2888875
No 215
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.99 E-value=0.022 Score=54.03 Aligned_cols=146 Identities=18% Similarity=0.163 Sum_probs=86.8
Q ss_pred cccceEEecCCccHHHHHH--------HHH-------CCCCeEEEeehhh--------HhhhC-------------C--C
Q 044482 179 ELKKLVDVASCLGANMSLI--------VNT-------YPQITGINFDLPY--------VIKNA-------------P--C 220 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l--------~~~-------~p~~~~~~~Dlp~--------~i~~a-------------~--r 220 (345)
..-+|+|+|||+|.++..+ .++ -|++++..-|+|. .+..- . +
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 3458999999999765433 333 2568888889873 11110 1 1
Q ss_pred ---ceEEeccCCc-CCCCC--CEEEeccccccCCh--h----------------------------------HHHHHHHH
Q 044482 221 ---VEHVEGDMFV-NVPSG--QAIFTKSVLLNWSD--E----------------------------------QCLKILKN 258 (345)
Q Consensus 221 ---i~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d--~----------------------------------~~~~iL~~ 258 (345)
+.-++|.|++ -+|++ ++++.++.||.++. + +...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456689998 68865 99999999987762 0 12345666
Q ss_pred HHhhCCCCCCCcEEEEEeccCCCCC-CCCch-hh--hhh-hccchhhhhhcCCC--------------ccCCHHHHHHHH
Q 044482 259 CYDALPKSRKHGRTQLRSKRGLPES-PEFSS-IN--RNI-LTLDIVMYDLFPQA--------------KGRTAGEFKALA 319 (345)
Q Consensus 259 ~~~aL~p~~~gG~lli~~d~~~~~~-~~~~~-~~--~~~-~~~d~~~~~~~~~~--------------~~rt~~e~~~ll 319 (345)
=++-|.| ||++++. =.-.++. +.... .. +.. ...-+.-|+. .| ..++.+|+++.+
T Consensus 223 Ra~ELvp---GG~mvl~-~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~--eGlI~eek~dsFniP~Y~ps~eEv~~~I 296 (386)
T PLN02668 223 RAQEMKR---GGAMFLV-CLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQ--EGLVTSEKRDSFNIPVYAPSLQDFKEVV 296 (386)
T ss_pred HHHHhcc---CcEEEEE-EecCCCCCcccCCchhHHHHHHHHHHHHHHHH--cCCCCHHHHhcccCcccCCCHHHHHHHH
Confidence 6778999 9999888 4333321 11000 00 000 0000111221 22 357999999999
Q ss_pred HHCC-CCceEEE
Q 044482 320 MAAG-FGTIKVI 330 (345)
Q Consensus 320 ~~aG-f~~~~~~ 330 (345)
++.| |++.++.
T Consensus 297 e~~gsF~I~~le 308 (386)
T PLN02668 297 EANGSFAIDKLE 308 (386)
T ss_pred hhcCCEEeeeeE
Confidence 9988 6555543
No 216
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.98 E-value=0.0011 Score=55.63 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=69.6
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCCCEEEeccccccCCh
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSGQAIFTKSVLLNWSD 249 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~D~i~~~~vlh~~~d 249 (345)
.++.|+|.|+|-++.-.+++ .-+++.++. |.....|. +++++.||..+ .+..+|+|+|-.+=--+=+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 57899999999998776665 336888887 66555554 79999999998 7756699988755444556
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+..+.+++.+.+-|+- +++++=.
T Consensus 112 E~qVpV~n~vleFLr~---d~tiiPq 134 (252)
T COG4076 112 EKQVPVINAVLEFLRY---DPTIIPQ 134 (252)
T ss_pred ccccHHHHHHHHHhhc---CCccccH
Confidence 6668899999999998 8877654
No 217
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.97 E-value=0.0065 Score=48.83 Aligned_cols=91 Identities=19% Similarity=0.191 Sum_probs=62.8
Q ss_pred eEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC--C-------ceEEeccCCc---CCCC--C-CEEEeccccc
Q 044482 183 LVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP--C-------VEHVEGDMFV---NVPS--G-QAIFTKSVLL 245 (345)
Q Consensus 183 vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~--r-------i~~~~gd~~~---~~p~--~-D~i~~~~vlh 245 (345)
++|+|||+|... .+....+. ..++++|. +.++..++ . +.+..+|... ++.. . |++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999987 44444443 46777888 55555433 1 5788888765 3333 3 888 554444
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
++.+ ....++++.+.++| +|.+++. +....
T Consensus 130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~-~~~~~ 159 (257)
T COG0500 130 HLLP--PAKALRELLRVLKP---GGRLVLS-DLLRD 159 (257)
T ss_pred hcCC--HHHHHHHHHHhcCC---CcEEEEE-eccCC
Confidence 4444 56889999999999 9998888 66543
No 218
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.96 E-value=0.0032 Score=57.90 Aligned_cols=164 Identities=13% Similarity=0.080 Sum_probs=99.3
Q ss_pred HHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeehhhHhhhCC------------CceEE
Q 044482 158 SMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDLPYVIKNAP------------CVEHV 224 (345)
Q Consensus 158 ~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dlp~~i~~a~------------ri~~~ 224 (345)
++...++..-+.+.+.++ .....||-+|||-=.-+-.+ ..| ++++.-+|+|++++.-+ +..++
T Consensus 73 ~~a~Rtr~fD~~~~~~~~--~g~~qvViLgaGLDTRayRl--~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~V 148 (297)
T COG3315 73 FLAARTRYFDDFVRAALD--AGIRQVVILGAGLDTRAYRL--DWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLV 148 (297)
T ss_pred hHHHHHHHHHHHHHHHHH--hcccEEEEeccccccceeec--CCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEE
Confidence 344444433333334333 23678999999865544333 345 47889999999987433 68999
Q ss_pred eccCCc-CCCC-----C------CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhh
Q 044482 225 EGDMFV-NVPS-----G------QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRN 292 (345)
Q Consensus 225 ~gd~~~-~~p~-----~------D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~ 292 (345)
+.|+++ +++. | -++++-.++.+++.++..++|++|.....| |+.++.. ................
T Consensus 149 a~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS~~~~~-~~~~~~~~~~~~~~~~ 224 (297)
T COG3315 149 AVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GSRVAFD-YSLPGSLRDRLRRPAA 224 (297)
T ss_pred eccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCC---CceEEEe-ccccHHHHhcccchhh
Confidence 999995 5541 2 478889999999999999999999999999 7766655 3211111000000000
Q ss_pred hhccchhhhhhc-CCCccCCHHHHHHHHHHCCCCceEE
Q 044482 293 ILTLDIVMYDLF-PQAKGRTAGEFKALAMAAGFGTIKV 329 (345)
Q Consensus 293 ~~~~d~~~~~~~-~~~~~rt~~e~~~ll~~aGf~~~~~ 329 (345)
...+........ ..-......+++.++.+.||.....
T Consensus 225 ~~~~~~~~~~~~e~~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 225 RKTMRGEDLDRGELVYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred hhhccccccccccceeccCCHHHHHHHHHhcCEEEEec
Confidence 000000000000 0112345789999999999987665
No 219
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.89 E-value=0.00026 Score=60.21 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=81.4
Q ss_pred ccc-ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCCCceEEeccCCc--CCC-CC---CEEEeccccccCC
Q 044482 177 FKE-LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAPCVEHVEGDMFV--NVP-SG---QAIFTKSVLLNWS 248 (345)
Q Consensus 177 ~~~-~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ri~~~~gd~~~--~~p-~~---D~i~~~~vlh~~~ 248 (345)
|.. ..++||+|.|.|..+..++..+.+ +..-++ ..|... ++-..-+... ++- .+ |+|.|-++|--..
T Consensus 109 w~~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~r---L~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~ 183 (288)
T KOG3987|consen 109 WGQEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDR---LKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCF 183 (288)
T ss_pred cCCCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHH---HhhcCCceeeehhhhhcCceeehHHHHHHHHhhc
Confidence 544 578999999999999888766643 122222 223332 2222223333 111 22 9999999996555
Q ss_pred hhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCC--CCchhhhhhhccchhhhhhcCCCccC--CHHHHHHHHHHCCC
Q 044482 249 DEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESP--EFSSINRNILTLDIVMYDLFPQAKGR--TAGEFKALAMAAGF 324 (345)
Q Consensus 249 d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~r--t~~e~~~ll~~aGf 324 (345)
++ -++|+.++.+|.|+ .|++++. .++|-.. +.+.... ..--| ..+-. +|+.+ ....+.++|+++||
T Consensus 184 ~p--~kLL~Di~~vl~ps--ngrviva--LVLP~~hYVE~N~~g~-~~rPd-n~Le~--~Gr~~ee~v~~~~e~lr~~g~ 253 (288)
T KOG3987|consen 184 DP--FKLLEDIHLVLAPS--NGRVIVA--LVLPYMHYVETNTSGL-PLRPD-NLLEN--NGRSFEEEVARFMELLRNCGY 253 (288)
T ss_pred Ch--HHHHHHHHHHhccC--CCcEEEE--EEecccceeecCCCCC-cCCch-HHHHh--cCccHHHHHHHHHHHHHhcCc
Confidence 55 58999999999996 7887765 3333210 0000000 00001 11111 44433 23356789999999
Q ss_pred CceEEEecC
Q 044482 325 GTIKVICRS 333 (345)
Q Consensus 325 ~~~~~~~~~ 333 (345)
.+...+..|
T Consensus 254 ~veawTrlP 262 (288)
T KOG3987|consen 254 RVEAWTRLP 262 (288)
T ss_pred hhhhhhcCC
Confidence 988777765
No 220
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.87 E-value=0.017 Score=50.39 Aligned_cols=129 Identities=17% Similarity=0.114 Sum_probs=89.1
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hh---HhhhCC------CceEEeccCCcCC--CC-CCEEEecccccc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PY---VIKNAP------CVEHVEGDMFVNV--PS-GQAIFTKSVLLN 246 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~---~i~~a~------ri~~~~gd~~~~~--p~-~D~i~~~~vlh~ 246 (345)
..+++|||.|.|.-+.-++=.+|+++++.+|. .. -++.+. +++++.+.+.+-. +. -|+|.++.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 58999999999999999999999999999997 21 233332 6889998877622 24 6999988775
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCc
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGT 326 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~ 326 (345)
....++.-+...+++ ||.++.. -.. .+++ -..+.+.....-|+++
T Consensus 146 ----~L~~l~e~~~pllk~---~g~~~~~-k~~--------------------------~~~~-e~~e~~~a~~~~~~~~ 190 (215)
T COG0357 146 ----SLNVLLELCLPLLKV---GGGFLAY-KGL--------------------------AGKD-ELPEAEKAILPLGGQV 190 (215)
T ss_pred ----chHHHHHHHHHhccc---CCcchhh-hHH--------------------------hhhh-hHHHHHHHHHhhcCcE
Confidence 224567777788888 8877655 110 0000 1345567777888888
Q ss_pred eEEEecC--C---ceEEEEEEcCC
Q 044482 327 IKVICRS--Y---CYWVIEFYKPK 345 (345)
Q Consensus 327 ~~~~~~~--~---~~~vi~~~k~~ 345 (345)
.++.... . ...++..+|+|
T Consensus 191 ~~~~~~~~p~~~~~r~l~ii~~~k 214 (215)
T COG0357 191 EKVFSLTVPELDGERHLVIIRKRK 214 (215)
T ss_pred EEEEEeecCCCCCceEEEEEeccC
Confidence 8886653 2 25566666654
No 221
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.86 E-value=0.0018 Score=61.76 Aligned_cols=86 Identities=9% Similarity=-0.009 Sum_probs=64.7
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC--C-CCEEEeccccccC
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP--S-GQAIFTKSVLLNW 247 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p--~-~D~i~~~~vlh~~ 247 (345)
.+|||++||+|..+..++.+.+..+++++|. |..++.++ ++++..+|+.+.+. . .|+|++.- .
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~--- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F--- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C---
Confidence 5899999999999999999887668999999 77776655 35688888865322 2 39888753 1
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.. ...+|..+.+.+++ ||.++|.
T Consensus 135 Gs--~~~~l~~al~~~~~---~gilyvS 157 (382)
T PRK04338 135 GS--PAPFLDSAIRSVKR---GGLLCVT 157 (382)
T ss_pred CC--cHHHHHHHHHHhcC---CCEEEEE
Confidence 11 13577887788899 8888877
No 222
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.72 E-value=0.0022 Score=52.12 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=33.8
Q ss_pred ceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC
Q 044482 182 KLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP 219 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ 219 (345)
+++|||||.|.++..+++.+|+.+++.+|. |.+.+.++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 589999999999999999999999999998 77766554
No 223
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.70 E-value=0.053 Score=47.00 Aligned_cols=127 Identities=16% Similarity=0.157 Sum_probs=90.3
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-C-C-CEEEecccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-S-G-QAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-~-~-D~i~~~~vl 244 (345)
...++.||||-+|.+...+.+.+|...++..|. +.-++.|. +++...+|-+.++. . . |++++...
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 334599999999999999999999999999998 55444433 89999999988554 3 3 87776643
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCC
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf 324 (345)
.-.-...||.+-.+-|+. --++++. | + . ...++++||.+.+|
T Consensus 95 ---GG~lI~~ILee~~~~l~~---~~rlILQ-----P-n-------------------~-------~~~~LR~~L~~~~~ 136 (226)
T COG2384 95 ---GGTLIREILEEGKEKLKG---VERLILQ-----P-N-------------------I-------HTYELREWLSANSY 136 (226)
T ss_pred ---cHHHHHHHHHHhhhhhcC---cceEEEC-----C-C-------------------C-------CHHHHHHHHHhCCc
Confidence 444557788888888875 3355555 1 1 0 14567899999999
Q ss_pred CceEEEecC--C-ceEEEEEEcC
Q 044482 325 GTIKVICRS--Y-CYWVIEFYKP 344 (345)
Q Consensus 325 ~~~~~~~~~--~-~~~vi~~~k~ 344 (345)
.++.-+=+. + .+-+|.+.+.
T Consensus 137 ~I~~E~ileE~~kiYEIlv~e~~ 159 (226)
T COG2384 137 EIKAETILEEDGKIYEILVVEKS 159 (226)
T ss_pred eeeeeeeecccCeEEEEEEEecC
Confidence 887654443 2 3556666654
No 224
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.62 E-value=0.0054 Score=55.51 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=55.0
Q ss_pred ccceEEecCCc-cHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC-----------CceEEeccCCc-CCC-CC-CEEEecc
Q 044482 180 LKKLVDVASCL-GANMSLIVNTY-PQITGINFDL-PYVIKNAP-----------CVEHVEGDMFV-NVP-SG-QAIFTKS 242 (345)
Q Consensus 180 ~~~vlDiGgG~-G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~-~~p-~~-D~i~~~~ 242 (345)
+.+|+=||+|. -..+..+++++ ++..++++|. |+.++.++ +++|+.+|..+ +.. .. |+|++..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 46999999995 45556666554 6788999998 66555443 89999999876 332 33 9999887
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..- .+.++..++|.++.+.|+| |.++++-
T Consensus 201 lVg-~~~e~K~~Il~~l~~~m~~---ga~l~~R 229 (276)
T PF03059_consen 201 LVG-MDAEPKEEILEHLAKHMAP---GARLVVR 229 (276)
T ss_dssp T-S-----SHHHHHHHHHHHS-T---TSEEEEE
T ss_pred hcc-cccchHHHHHHHHHhhCCC---CcEEEEe
Confidence 764 3344557999999999999 8866665
No 225
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.54 E-value=0.0018 Score=55.94 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=58.6
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC--CEEEeccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG--QAIFTKSV 243 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~--D~i~~~~v 243 (345)
..+..+|+|.-||.|.++..+++..+..+++..|+ |..++..+ ++..+.+|..+-.+.+ |-|+|...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 34668999999999999999999887888999999 76655333 6889999988744333 87777532
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEE
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRT 272 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~l 272 (345)
. .+...|..+.+.+++ ||.+
T Consensus 179 -----~-~~~~fl~~~~~~~~~---~g~i 198 (200)
T PF02475_consen 179 -----E-SSLEFLDAALSLLKE---GGII 198 (200)
T ss_dssp -----S-SGGGGHHHHHHHEEE---EEEE
T ss_pred -----H-HHHHHHHHHHHHhcC---CcEE
Confidence 2 224578888888888 7644
No 226
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.50 E-value=0.021 Score=48.11 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=35.9
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeehhhH
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDLPYV 214 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~ 214 (345)
|-+.|.-+....+|||+||..|.++.-..++. |+..+.++|+-++
T Consensus 60 indKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~ 105 (232)
T KOG4589|consen 60 INDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI 105 (232)
T ss_pred ehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec
Confidence 34455534567899999999999999988875 9999999998543
No 227
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.44 E-value=0.0035 Score=59.22 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=39.8
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV 230 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~ 230 (345)
.++||++||+|.++..+++... +++++|. +++++.++ +++++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4699999999999999998874 7999998 77877666 56788887754
No 228
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.38 E-value=0.02 Score=59.11 Aligned_cols=105 Identities=14% Similarity=0.051 Sum_probs=69.1
Q ss_pred HHHHHHhccCc-ccccceEEecCCccHHHHHHHHHC------------------------------------------CC
Q 044482 167 MKKILEIYKGF-KELKKLVDVASCLGANMSLIVNTY------------------------------------------PQ 203 (345)
Q Consensus 167 ~~~i~~~~~~~-~~~~~vlDiGgG~G~~~~~l~~~~------------------------------------------p~ 203 (345)
+..++..-. | .+...++|-.||+|+++++.+... +.
T Consensus 178 Aaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~ 256 (702)
T PRK11783 178 AAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP 256 (702)
T ss_pred HHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 444555444 6 446789999999999998876531 12
Q ss_pred CeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCC-C---CCEEEecccc-ccCC-hhHHHHHHHHHHhhCC-
Q 044482 204 ITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVP-S---GQAIFTKSVL-LNWS-DEQCLKILKNCYDALP- 264 (345)
Q Consensus 204 ~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p-~---~D~i~~~~vl-h~~~-d~~~~~iL~~~~~aL~- 264 (345)
.+++++|+ +.+++.|+ ++++..+|+.+ +.+ . .|+|+++--. ..+. +++...+.+++.+.++
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~ 336 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQ 336 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHH
Confidence 36899998 88888766 58899999987 443 2 2888887322 1222 2344455555444444
Q ss_pred --CCCCCcEEEEE
Q 044482 265 --KSRKHGRTQLR 275 (345)
Q Consensus 265 --p~~~gG~lli~ 275 (345)
+ |+++.++
T Consensus 337 ~~~---g~~~~ll 346 (702)
T PRK11783 337 QFG---GWNAALF 346 (702)
T ss_pred hCC---CCeEEEE
Confidence 7 8888777
No 229
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.36 E-value=0.013 Score=57.40 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=68.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC---------CceEEeccCCc---CCCCC-CEEEe-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP---------CVEHVEGDMFV---NVPSG-QAIFT- 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~---~~p~~-D~i~~- 240 (345)
-....+|||+++|.|.-+..+++...+ ..++..|+ +.-++..+ ++.+...|... .++.. |.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 456689999999999999999998654 57889998 44333322 56666677653 22333 88873
Q ss_pred ---c---------cccccCChhHH-------HHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 241 ---K---------SVLLNWSDEQC-------LKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 241 ---~---------~vlh~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
+ .+...|+.++. .+||+++.+.|+| ||+|+-. ...
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYS-TCT 244 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYS-TCT 244 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEE-CCC
Confidence 3 12234555533 5899999999999 9988655 443
No 230
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.27 E-value=0.0094 Score=55.26 Aligned_cols=96 Identities=17% Similarity=0.219 Sum_probs=64.3
Q ss_pred cccccceEEecCCccHHHHHHHHH-------CCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCc-CCCC--
Q 044482 177 FKELKKLVDVASCLGANMSLIVNT-------YPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFV-NVPS-- 234 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~-------~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~-~~p~-- 234 (345)
-....+|+|-+||+|.++.++.+. .+..+++++|+ +.++..++ ......+|.+. +...
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 445678999999999999998874 47788999999 65555443 34578899887 3322
Q ss_pred -C-CEEEec--cccccCChh-----------------HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 -G-QAIFTK--SVLLNWSDE-----------------QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 -~-D~i~~~--~vlh~~~d~-----------------~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|+++ +....|.+. .-...+.++.+.|++ ||++.++
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~I 182 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAII 182 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEE
Confidence 2 998886 232322111 112478889999999 9998766
No 231
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=96.26 E-value=0.028 Score=47.87 Aligned_cols=82 Identities=21% Similarity=0.218 Sum_probs=60.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC------------CceEEeccCCc-CC----C------CC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP------------CVEHVEGDMFV-NV----P------SG 235 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~------------ri~~~~gd~~~-~~----p------~~ 235 (345)
+...||-+|||-=+....+...+++++.+-+|+|++++..+ ++++++.|+.+ .+ . +.
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 44589999999999999999988899999999999877544 36789999985 21 1 12
Q ss_pred -CEEEeccccccCChhHHHHHHHHHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCY 260 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~ 260 (345)
-++++-.++.+++.+++..+|+.++
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 5788889999999999999998764
No 232
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.25 E-value=0.023 Score=52.76 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=58.6
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---CceEEeccCCcCCC-CC--CEEEeccccccCChhH
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---CVEHVEGDMFVNVP-SG--QAIFTKSVLLNWSDEQ 251 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---ri~~~~gd~~~~~p-~~--D~i~~~~vlh~~~d~~ 251 (345)
....++|||||++|.++..++++ +.+++.+|..++-+... +|++..+|.+...| .+ |.+++--+. .+.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve---~P~- 283 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE---KPA- 283 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc---CHH-
Confidence 45679999999999999999988 45999999855544322 89999999988554 33 888877663 333
Q ss_pred HHHHHHHHHhhCCC
Q 044482 252 CLKILKNCYDALPK 265 (345)
Q Consensus 252 ~~~iL~~~~~aL~p 265 (345)
++++-+.+.|..
T Consensus 284 --rva~lm~~Wl~~ 295 (357)
T PRK11760 284 --RVAELMAQWLVN 295 (357)
T ss_pred --HHHHHHHHHHhc
Confidence 445555555655
No 233
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=96.25 E-value=0.00028 Score=46.97 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=37.2
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID 89 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~ 89 (345)
|.+.+ ...+.+.|+.|||+++|+ +...+.|+|..|+..|+++++
T Consensus 8 iL~~l-~~~~~~~t~~eia~~~gl-------~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 8 ILEAL-AESGGPLTLSEIARALGL-------PKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHCH-HCTBSCEEHHHHHHHHTS--------HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHH-HcCCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCcCeecC
Confidence 67777 444557899999999999 678999999999999999875
No 234
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.15 E-value=0.0056 Score=58.08 Aligned_cols=48 Identities=8% Similarity=0.052 Sum_probs=39.1
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV 230 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~ 230 (345)
.++||++||+|.++..+++... +++++|. +.+++.++ +++++.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 4799999999999999998864 7899998 77777665 56777777654
No 235
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.11 E-value=0.0072 Score=57.02 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=74.7
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeehhh-HhhhCC----------CceEEeccCCc-CCCCC--CEEEecccccc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDLPY-VIKNAP----------CVEHVEGDMFV-NVPSG--QAIFTKSVLLN 246 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~-~i~~a~----------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~ 246 (345)
..++|+|||.|.....+.. +.....+++|... -+..+. +..++.+|+.+ ++++. |.+.+..+..|
T Consensus 112 ~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~ 190 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCH 190 (364)
T ss_pred ccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeeccc
Confidence 4789999999999998875 4456778888732 222222 56678899998 67754 99888888888
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCC
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPES 283 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~ 283 (345)
.++.. .++++++++++| ||.+++- |.+....
T Consensus 191 ~~~~~--~~y~Ei~rv~kp---GG~~i~~-e~i~~~~ 221 (364)
T KOG1269|consen 191 APDLE--KVYAEIYRVLKP---GGLFIVK-EWIKTAK 221 (364)
T ss_pred CCcHH--HHHHHHhcccCC---CceEEeH-HHHHhhh
Confidence 88874 789999999999 9999888 8886554
No 236
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.05 E-value=0.0044 Score=55.26 Aligned_cols=76 Identities=34% Similarity=0.589 Sum_probs=59.1
Q ss_pred ccCCCchhhhhhcCHHHHHHHHHHHHHhh----------hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCcccc
Q 044482 3 AHNGLHLFDYASKDARLQNLFNQSMHNHT----------AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHV 72 (345)
Q Consensus 3 ~~~g~~~~~~~~~~~~~~~~f~~~~~l~~----------a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~ 72 (345)
.++|.++|+++.++|+....|..+|...+ +.++...-.++|.+||.|.-+.+|+++.+-++++.+|.|..
T Consensus 56 ~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v 135 (241)
T PF00891_consen 56 KAFGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEV 135 (241)
T ss_dssp HHHSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHH
T ss_pred HhcCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhh
Confidence 45688999999999999999988775432 33443355688999999999999999999999999999988
Q ss_pred ccccCC
Q 044482 73 IENASS 78 (345)
Q Consensus 73 l~rlL~ 78 (345)
++..-+
T Consensus 136 ~~~~~~ 141 (241)
T PF00891_consen 136 IEQAKE 141 (241)
T ss_dssp HCCHHH
T ss_pred hhcccc
Confidence 766555
No 237
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.96 E-value=0.13 Score=46.88 Aligned_cols=135 Identities=14% Similarity=0.088 Sum_probs=88.9
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeehhh------HhhhCC----------------------------------
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDLPY------VIKNAP---------------------------------- 219 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~------~i~~a~---------------------------------- 219 (345)
..+||-=|||.|.++..|+...+.+++--+..-- ++...+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 4578889999999999999988887664222110 111111
Q ss_pred --------CceEEeccCCc--CCCC--C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCC
Q 044482 220 --------CVEHVEGDMFV--NVPS--G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPE 285 (345)
Q Consensus 220 --------ri~~~~gd~~~--~~p~--~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~ 285 (345)
..+...|||.+ +.++ + |+|+..+.+- +-.....-|..|...|+| ||..+=+ .+.+-.-..
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~---GGvWiNl-GPLlYHF~d 304 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKP---GGVWINL-GPLLYHFED 304 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccC---CcEEEec-cceeeeccC
Confidence 34557899998 3443 2 8888886662 344567889999999999 8866655 333322111
Q ss_pred CchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecC
Q 044482 286 FSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 286 ~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
.+ + ... ..+-+.+.+++..+.+.-||++++...+.
T Consensus 305 ~~---------g---~~~-~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 305 TH---------G---VEN-EMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred CC---------C---Ccc-cccccccHHHHHHHHHhcCcEEEEeeeee
Confidence 10 0 011 13567899999999999999998876553
No 238
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.79 E-value=0.052 Score=46.84 Aligned_cols=110 Identities=18% Similarity=0.170 Sum_probs=77.2
Q ss_pred HHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC--------CceEEec---c
Q 044482 159 MQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP--------CVEHVEG---D 227 (345)
Q Consensus 159 m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~--------ri~~~~g---d 227 (345)
|.....+.+...++.+ ..+..+||.||=|-|.....+.++.|..+.|+---|.|.+..+ ++....| |
T Consensus 83 Mm~WEtpiMha~A~ai--~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeD 160 (271)
T KOG1709|consen 83 MMRWETPIMHALAEAI--STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWED 160 (271)
T ss_pred hhhhhhHHHHHHHHHH--hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHh
Confidence 4444444444444443 3677899999999999999999998887777666688887665 6666666 5
Q ss_pred CCcCCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 228 MFVNVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 228 ~~~~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
....+|++ |-|+.-..-.+ -++.....+.+.+.||| +|.+--+
T Consensus 161 vl~~L~d~~FDGI~yDTy~e~--yEdl~~~hqh~~rLLkP---~gv~Syf 205 (271)
T KOG1709|consen 161 VLNTLPDKHFDGIYYDTYSEL--YEDLRHFHQHVVRLLKP---EGVFSYF 205 (271)
T ss_pred hhccccccCcceeEeechhhH--HHHHHHHHHHHhhhcCC---CceEEEe
Confidence 55567754 77766543222 24556788899999999 9877665
No 239
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.74 E-value=0.033 Score=55.64 Aligned_cols=63 Identities=11% Similarity=0.130 Sum_probs=44.3
Q ss_pred cccceEEecCCccHHHHHHHHHCCC--------CeEEEeeh-hhHhhhCC---------CceEEeccCCcC-C------C
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQ--------ITGINFDL-PYVIKNAP---------CVEHVEGDMFVN-V------P 233 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~--------~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~-~------p 233 (345)
...+|+|.|||+|.++.+++++.+. ..++++|+ +..++.++ .++...+|++.. . .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 3468999999999999999987752 46789998 66665443 345566665541 1 1
Q ss_pred CC-CEEEec
Q 044482 234 SG-QAIFTK 241 (345)
Q Consensus 234 ~~-D~i~~~ 241 (345)
.. |+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 23 999886
No 240
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.68 E-value=0.1 Score=44.48 Aligned_cols=98 Identities=11% Similarity=0.188 Sum_probs=66.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCCC-CEEEecccccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPSG-QAIFTKSVLLN 246 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~~-D~i~~~~vlh~ 246 (345)
+-..++|||+|.|+|..+++-++.- ...++.-|. |......+ .|.+...|..- .|.+ |+++...++++
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-CCcceeEEEeeceecC
Confidence 5567899999999999998877654 234555555 44443333 67788888766 3334 99999999965
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
-+ .+.+++. +.+.++.. |..++|. |.-.+.
T Consensus 155 ~~--~a~~l~~-~~~~l~~~--g~~vlvg-dp~R~~ 184 (218)
T COG3897 155 HT--EADRLIP-WKDRLAEA--GAAVLVG-DPGRAY 184 (218)
T ss_pred ch--HHHHHHH-HHHHHHhC--CCEEEEe-CCCCCC
Confidence 44 4456677 66777661 5566666 655443
No 241
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.66 E-value=0.13 Score=44.81 Aligned_cols=141 Identities=14% Similarity=0.073 Sum_probs=87.8
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-h----hHhhhCC---CceEEeccCCcCCC-----CC-CEEEec
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-P----YVIKNAP---CVEHVEGDMFVNVP-----SG-QAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p----~~i~~a~---ri~~~~gd~~~~~p-----~~-D~i~~~ 241 (345)
+....+||-+|..+|++...+..-- |+-.+.+++. | +.+..|+ ||--+-.|...|.. +. |+|+.-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 7778899999999999999999864 4777888887 4 3455555 56666688876432 23 777654
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
=. .++++.-+..++..-||+ ||.++|. =- ....|. + ....-...+-.+.|++
T Consensus 151 Va----Qp~Qa~I~~~Na~~fLk~---gG~~~i~-iK--------------a~siD~-----t-~~p~~vf~~e~~~L~~ 202 (229)
T PF01269_consen 151 VA----QPDQARIAALNARHFLKP---GGHLIIS-IK--------------ARSIDS-----T-ADPEEVFAEEVKKLKE 202 (229)
T ss_dssp -S----STTHHHHHHHHHHHHEEE---EEEEEEE-EE--------------HHHH-S-----S-SSHHHHHHHHHHHHHC
T ss_pred CC----ChHHHHHHHHHHHhhccC---CcEEEEE-Ee--------------cCcccC-----c-CCHHHHHHHHHHHHHH
Confidence 22 245667788889899999 9988877 10 011111 0 0000012233567788
Q ss_pred CCCCceEEEecCC---ceEEEEEEcCC
Q 044482 322 AGFGTIKVICRSY---CYWVIEFYKPK 345 (345)
Q Consensus 322 aGf~~~~~~~~~~---~~~vi~~~k~~ 345 (345)
.||+..+...+.+ .+.++.++..|
T Consensus 203 ~~~~~~e~i~LePy~~dH~~vv~~y~~ 229 (229)
T PF01269_consen 203 EGFKPLEQITLEPYERDHAMVVGRYRK 229 (229)
T ss_dssp TTCEEEEEEE-TTTSTTEEEEEEEE--
T ss_pred cCCChheEeccCCCCCCcEEEEEEecC
Confidence 9999999988854 47777777543
No 242
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.59 E-value=0.0076 Score=46.27 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=38.4
Q ss_pred EEecCCccHHHHHHHHHCCCC---eEEEeeh-h---hHhhhCC------CceEEeccCCcC---CC-CC-CEEEeccccc
Q 044482 184 VDVASCLGANMSLIVNTYPQI---TGINFDL-P---YVIKNAP------CVEHVEGDMFVN---VP-SG-QAIFTKSVLL 245 (345)
Q Consensus 184 lDiGgG~G~~~~~l~~~~p~~---~~~~~Dl-p---~~i~~a~------ri~~~~gd~~~~---~p-~~-D~i~~~~vlh 245 (345)
|+||+..|..+..+++..+.. +++.+|. + ..-+..+ +++++.+|..+. ++ .. |++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999999876654 5899998 4 2322222 899999998763 33 23 8877654 22
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEec
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSK 277 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d 277 (345)
+.+.+..-|+.+.+.|+| ||.|++. |
T Consensus 80 --~~~~~~~dl~~~~~~l~~---ggviv~d-D 105 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLAP---GGVIVFD-D 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEE---EEEEEEE--
T ss_pred --CHHHHHHHHHHHHHHcCC---CeEEEEe-C
Confidence 235567789999999999 8876665 5
No 243
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.56 E-value=0.12 Score=48.39 Aligned_cols=144 Identities=22% Similarity=0.186 Sum_probs=79.2
Q ss_pred cccccceEEecCCccHHHHHHH--------HHC--------CCCeEEEeehhhH--------hhhC-------C--CceE
Q 044482 177 FKELKKLVDVASCLGANMSLIV--------NTY--------PQITGINFDLPYV--------IKNA-------P--CVEH 223 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~--------~~~--------p~~~~~~~Dlp~~--------i~~a-------~--ri~~ 223 (345)
.+..-+|+|+||.+|..+..+. +++ |+++++.-|+|.- +..- + -+.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 4456789999999999876654 222 3467888899741 1111 2 3567
Q ss_pred EeccCCc-CCCCC--CEEEeccccccCCh-------------------------h------------HHHHHHHHHHhhC
Q 044482 224 VEGDMFV-NVPSG--QAIFTKSVLLNWSD-------------------------E------------QCLKILKNCYDAL 263 (345)
Q Consensus 224 ~~gd~~~-~~p~~--D~i~~~~vlh~~~d-------------------------~------------~~~~iL~~~~~aL 263 (345)
++|.|+. -+|++ |+++.++.||.++. + +...+|+.=++-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 7899999 67865 99999999987652 1 2234555556678
Q ss_pred CCCCCCcEEEEEeccCCCCCCCCchhhhhhhccch-----hhhhhcCCC--------------ccCCHHHHHHHHHHCC-
Q 044482 264 PKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDI-----VMYDLFPQA--------------KGRTAGEFKALAMAAG- 323 (345)
Q Consensus 264 ~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~-----~~~~~~~~~--------------~~rt~~e~~~ll~~aG- 323 (345)
+| ||++++. =.-.++..... ......+++ .-|+. .| ..++.+|+++.+++.|
T Consensus 174 v~---GG~mvl~-~~gr~~~~~~~--~~~~~~~~~l~~~l~dMv~--eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gs 245 (334)
T PF03492_consen 174 VP---GGRMVLT-FLGRDEEDPSS--TGSCMLWDLLADALRDMVA--EGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGS 245 (334)
T ss_dssp EE---EEEEEEE-EEE-STSSTTS--TTCCCHHHHHHHHHHHHHH--TTSS-HCCCCTG--SBB---HHHHHHHHHHHTS
T ss_pred cc---CcEEEEE-Eeecccccccc--CCcchHHHHHHHHHHHHHH--cCCcCHHHhhceeCCccCCCHHHHHHHHhcCCC
Confidence 99 9998888 54444411100 000011111 11221 22 3579999999999987
Q ss_pred CCceE
Q 044482 324 FGTIK 328 (345)
Q Consensus 324 f~~~~ 328 (345)
|++.+
T Consensus 246 F~I~~ 250 (334)
T PF03492_consen 246 FEIEK 250 (334)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 54433
No 244
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.16 Score=46.21 Aligned_cols=151 Identities=11% Similarity=0.090 Sum_probs=98.7
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHC--CCCeEEEeehhhHhhhCC---------------------------
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTY--PQITGINFDLPYVIKNAP--------------------------- 219 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~--p~~~~~~~Dlp~~i~~a~--------------------------- 219 (345)
.+++. +.....|+-+|||.-.....+...+ +.+.++-+|.|++++.--
T Consensus 80 ~Fl~~---~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~ 156 (335)
T KOG2918|consen 80 AFLEQ---TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTD 156 (335)
T ss_pred HHHHh---cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcce
Confidence 45554 4466789999999999999999988 788999999988765211
Q ss_pred ----CceEEeccCCc--CC----CC-C------CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 220 ----CVEHVEGDMFV--NV----PS-G------QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 220 ----ri~~~~gd~~~--~~----p~-~------D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
|...+..|..+ .+ .. + -+++.--+|-+.+++++..+++.+.+..+. +.+++. |++.+.
T Consensus 157 l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~Y-EQi~~~ 231 (335)
T KOG2918|consen 157 LHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNY-EQINPN 231 (335)
T ss_pred eccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEE-eccCCC
Confidence 34445555442 11 01 1 234445677788999999999999988876 678888 998865
Q ss_pred CCCCchhhh--hhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 283 SPEFSSINR--NILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 283 ~~~~~~~~~--~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
++=+..... ...-.++.-+ -..-|.+..++-+.++||+.+.+.++
T Consensus 232 D~Fg~vM~~nlk~r~~~L~gl-----e~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 232 DRFGKVMLANLKRRGCPLHGL-----ETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred ChHHHHHHHHHHhcCCCCchh-----hhcccHHHHHHHHHhcCCceeehhhH
Confidence 531110000 0000111101 12357889999999999998877554
No 245
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.24 E-value=0.8 Score=39.33 Aligned_cols=146 Identities=15% Similarity=0.108 Sum_probs=94.5
Q ss_pred HHHHh---ccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hh----HhhhCC---CceEEeccCCcCCC----
Q 044482 169 KILEI---YKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PY----VIKNAP---CVEHVEGDMFVNVP---- 233 (345)
Q Consensus 169 ~i~~~---~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~----~i~~a~---ri~~~~gd~~~~~p---- 233 (345)
.|+.. ++ .+...+||=+|..+|++...+..-.++-.+.+++. |. .+..++ |+--+-+|+..|..
T Consensus 64 aIl~Gl~~~p-i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~ 142 (231)
T COG1889 64 AILKGLKNFP-IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHL 142 (231)
T ss_pred HHHcCcccCC-cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhh
Confidence 45444 44 77889999999999999999999888767777776 33 355555 56666688876543
Q ss_pred -CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCC
Q 044482 234 -SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRT 311 (345)
Q Consensus 234 -~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt 311 (345)
+. |+|+.- | -.++++.-+..++..-|++ ||.++|. =-.. ..|. +...++ .
T Consensus 143 Ve~VDviy~D-V---AQp~Qa~I~~~Na~~FLk~---~G~~~i~-iKAr--------------SIdv-----T~dp~~-v 194 (231)
T COG1889 143 VEKVDVIYQD-V---AQPNQAEILADNAEFFLKK---GGYVVIA-IKAR--------------SIDV-----TADPEE-V 194 (231)
T ss_pred cccccEEEEe-c---CCchHHHHHHHHHHHhccc---CCeEEEE-EEee--------------cccc-----cCCHHH-H
Confidence 23 877643 1 1355666778888999999 8876665 1111 1110 000000 0
Q ss_pred HHHHHHHHHHCCCCceEEEecCC---ceEEEEEEc
Q 044482 312 AGEFKALAMAAGFGTIKVICRSY---CYWVIEFYK 343 (345)
Q Consensus 312 ~~e~~~ll~~aGf~~~~~~~~~~---~~~vi~~~k 343 (345)
..+-.+-|++.||++.+...+.+ .|.+|.+.+
T Consensus 195 f~~ev~kL~~~~f~i~e~~~LePye~DH~~i~~~~ 229 (231)
T COG1889 195 FKDEVEKLEEGGFEILEVVDLEPYEKDHALIVAKY 229 (231)
T ss_pred HHHHHHHHHhcCceeeEEeccCCcccceEEEEEee
Confidence 22234667889999999988853 477777654
No 246
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.23 E-value=0.059 Score=50.57 Aligned_cols=107 Identities=16% Similarity=0.243 Sum_probs=76.0
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh---hhHhhhCC----------------CceEEeccC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL---PYVIKNAP----------------CVEHVEGDM 228 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl---p~~i~~a~----------------ri~~~~gd~ 228 (345)
..+.+.+. ........|+|+|.|.....++.......-+++.+ |.-+...+ .++.+.|+|
T Consensus 182 ~si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 182 RSIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 34555555 66778899999999999988876654444555555 33222221 488889998
Q ss_pred CcCC------CCCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 229 FVNV------PSGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 229 ~~~~------p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
..+- +++++|+++++. |+++...++= ++..-+++ |-||+-. +.+.+-
T Consensus 261 ~~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr~~-eil~~ck~---gtrIiS~-~~L~~r 313 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNNVA--FDPELKLRSK-EILQKCKD---GTRIISS-KPLVPR 313 (419)
T ss_pred CCHHHHHHHhhcceEEEEeccc--CCHHHHHhhH-HHHhhCCC---cceEecc-cccccc
Confidence 8731 235999999997 6666655544 88899999 9999998 888774
No 247
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.017 Score=47.42 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=60.5
Q ss_pred cceEEecCCccH-HHHHHHHHCCCCeEEEeeh-hhHhhhCC------------CceEEeccCCcC--CC-C--CCEEEec
Q 044482 181 KKLVDVASCLGA-NMSLIVNTYPQITGINFDL-PYVIKNAP------------CVEHVEGDMFVN--VP-S--GQAIFTK 241 (345)
Q Consensus 181 ~~vlDiGgG~G~-~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~~--~p-~--~D~i~~~ 241 (345)
.+|+++|||--. .+..++.+-|...+.+-|- ...++..+ ++..+.-+.... +. + .|+|++.
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 689999999544 4555666678888888886 33333322 444444443331 11 2 2999999
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.++ |=|+....+.+.|...|+| .|+-++.
T Consensus 111 DCl--FfdE~h~sLvdtIk~lL~p---~g~Al~f 139 (201)
T KOG3201|consen 111 DCL--FFDEHHESLVDTIKSLLRP---SGRALLF 139 (201)
T ss_pred cch--hHHHHHHHHHHHHHHHhCc---ccceeEe
Confidence 988 3455567899999999999 7887777
No 248
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.04 E-value=0.036 Score=50.69 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=67.1
Q ss_pred cceEEecCCccHHHHHHHHHC--------------------CCCeEEEeeh---hhHhhh-------C------------
Q 044482 181 KKLVDVASCLGANMSLIVNTY--------------------PQITGINFDL---PYVIKN-------A------------ 218 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~--------------------p~~~~~~~Dl---p~~i~~-------a------------ 218 (345)
.+||-||||.|.=..+++..+ |.+.++.+|+ ..|+.. .
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 689999999998777776655 2367899998 344432 1
Q ss_pred C-------CceEEeccCCc-CCCC--------C-CEEEeccccccC---ChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 219 P-------CVEHVEGDMFV-NVPS--------G-QAIFTKSVLLNW---SDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 219 ~-------ri~~~~gd~~~-~~p~--------~-D~i~~~~vlh~~---~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
. +++|.+.|+++ ..++ . ++|.+-..++.+ +-.+-.++|.++-..++| |..++|+ |.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVv-DS 243 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVV-DS 243 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEE-cC
Confidence 0 68899999987 3221 2 666655555432 345668999999999999 9999999 54
No 249
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.98 E-value=0.027 Score=49.93 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=60.1
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCC--CCEEEeccccccC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPS--GQAIFTKSVLLNW 247 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~--~D~i~~~~vlh~~ 247 (345)
.+.+|+|||||.==++.......|+.+.++.|+ +..++... +.+....|.++..|+ .|+.++--++|-+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPCL 184 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHHH
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHHH
Confidence 478999999999999999998999999999999 66655433 677788899986664 3999999999876
Q ss_pred ChhHHHHHHHHHHhhCCC
Q 044482 248 SDEQCLKILKNCYDALPK 265 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p 265 (345)
...+. ..--++.+.++.
T Consensus 185 e~q~~-g~g~~ll~~~~~ 201 (251)
T PF07091_consen 185 ERQRR-GAGLELLDALRS 201 (251)
T ss_dssp HHHST-THHHHHHHHSCE
T ss_pred HHHhc-chHHHHHHHhCC
Confidence 55442 233344455554
No 250
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.70 E-value=0.58 Score=41.36 Aligned_cols=99 Identities=15% Similarity=0.068 Sum_probs=56.5
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCC---C-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPS---G- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~---~- 235 (345)
-+.+..+ +. .++||=|| -.=..+.+++-.++..+++++|+ ..+++..+ .|+.+..|+..++|+ +
T Consensus 36 ~~~~~gd-L~-gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~ 112 (243)
T PF01861_consen 36 LMAERGD-LE-GKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGK 112 (243)
T ss_dssp HHHHTT--ST-T-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-
T ss_pred HHHhcCc-cc-CCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcC
Confidence 3445544 33 47899888 45556667777777789999999 55555333 688999999999883 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|++++-=. ++.+-..-++.+..++|+.. |+..++.
T Consensus 113 fD~f~TDPP---yT~~G~~LFlsRgi~~Lk~~--g~~gy~~ 148 (243)
T PF01861_consen 113 FDVFFTDPP---YTPEGLKLFLSRGIEALKGE--GCAGYFG 148 (243)
T ss_dssp BSEEEE------SSHHHHHHHHHHHHHTB-ST--T-EEEEE
T ss_pred CCEEEeCCC---CCHHHHHHHHHHHHHHhCCC--CceEEEE
Confidence 99987643 45567778999999999982 4444443
No 251
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=94.67 E-value=0.7 Score=41.49 Aligned_cols=112 Identities=16% Similarity=0.180 Sum_probs=77.1
Q ss_pred HHHHHHHHhhHH----HHHHHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeehhhH-hhhCC--------
Q 044482 154 LFNQSMQNHTAI----VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDLPYV-IKNAP-------- 219 (345)
Q Consensus 154 ~f~~~m~~~~~~----~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dlp~~-i~~a~-------- 219 (345)
.|-.+|-..++. .+..|+..++ .....+|++-|.|+|.++-++++. -|.-+.+-+|..+. .+.|.
T Consensus 77 LWTl~LphRTQI~Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi 155 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI 155 (314)
T ss_pred HhhhhccCcceEEecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC
Confidence 344555544442 2445777777 888899999999999999999998 57788888998332 33332
Q ss_pred --CceEEeccCCc-CCC--C--CCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 --CVEHVEGDMFV-NVP--S--GQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 --ri~~~~gd~~~-~~p--~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++.+...|+-. .++ + +|+|++ +++.+. ..+-.+++.|+.+ ||+++.+
T Consensus 156 ~~~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~--g~r~csF 209 (314)
T KOG2915|consen 156 GDNVTVTHRDVCGSGFLIKSLKADAVFL-----DLPAPW--EAIPHAAKILKDE--GGRLCSF 209 (314)
T ss_pred CcceEEEEeecccCCccccccccceEEE-----cCCChh--hhhhhhHHHhhhc--CceEEec
Confidence 68888888877 444 2 288876 455443 3356666788873 5577766
No 252
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=94.53 E-value=0.11 Score=49.54 Aligned_cols=86 Identities=12% Similarity=0.085 Sum_probs=65.2
Q ss_pred cceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC---CC-CEEEeccccc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP---SG-QAIFTKSVLL 245 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p---~~-D~i~~~~vlh 245 (345)
-+|||+-||+|..++.++.+.++ -+++..|+ |..++.++ ++++..+|+..-+. .. |+|.+-- .
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 47999999999999999998655 47899999 77666554 47788898876322 23 9988754 2
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..+ ..+|..+.+.+++ ||.|+|.
T Consensus 124 Gs~----~~fld~al~~~~~---~glL~vT 146 (374)
T TIGR00308 124 GTP----APFVDSAIQASAE---RGLLLVT 146 (374)
T ss_pred CCc----HHHHHHHHHhccc---CCEEEEE
Confidence 211 2578888899999 9988887
No 253
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=94.51 E-value=0.0059 Score=54.77 Aligned_cols=56 Identities=13% Similarity=0.007 Sum_probs=46.4
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~ 101 (345)
|.+.+ ....++.++.|||+++|+ +...+.|+|..|+..|++++++..|.+++....
T Consensus 14 IL~~l-~~~~~~~~l~eia~~lgl-------pksT~~RlL~tL~~~G~l~~~~~~Y~lG~~~~~ 69 (248)
T TIGR02431 14 VIEAF-GAERPRLTLTDVAEATGL-------TRAAARRFLLTLVELGYVTSDGRLFWLTPRVLR 69 (248)
T ss_pred HHHHH-hcCCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEeCCCEEEecHHHHH
Confidence 66777 433457999999999999 678899999999999999987778998876543
No 254
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.49 E-value=0.056 Score=41.34 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=29.5
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL 211 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl 211 (345)
+.-|...+. -......+|||||.|.+.--|.+. +-++.++|.
T Consensus 47 i~LW~~~~~-~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 47 IELWRDMYG-EQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred HHHHhcccC-CCCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 333444444 345678999999999988777765 345788886
No 255
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.46 E-value=0.19 Score=43.94 Aligned_cols=95 Identities=14% Similarity=0.165 Sum_probs=68.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCCC-CeEEEeehh-h-------HhhhCC---CceEEeccCCcCCC----C---C--
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDLP-Y-------VIKNAP---CVEHVEGDMFVNVP----S---G-- 235 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dlp-~-------~i~~a~---ri~~~~gd~~~~~p----~---~-- 235 (345)
.-++++.||||.=+|..+.+++.+-|+ .+++.+|.+ . +++.|. .|++++|+..+.++ + +
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 445689999999999999999999886 578888883 2 233443 89999998887433 2 2
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
|.+|+- +|.+ .....+.++.+.+++ || ++++ |.++.
T Consensus 151 DfaFvD----adK~-nY~~y~e~~l~Llr~---GG-vi~~-DNvl~ 186 (237)
T KOG1663|consen 151 DFAFVD----ADKD-NYSNYYERLLRLLRV---GG-VIVV-DNVLW 186 (237)
T ss_pred eEEEEc----cchH-HHHHHHHHHHhhccc---cc-EEEE-ecccc
Confidence 777653 3444 445889999999999 77 5555 55443
No 256
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.33 E-value=0.037 Score=47.88 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=41.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV 230 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~ 230 (345)
....|+|.-||.|..++.++.++|. ++.+|+ |.-|..|+ ||.|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 5578999999999999999999986 667776 55566655 99999999987
No 257
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=93.86 E-value=0.28 Score=46.84 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=68.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCCC----CC---CEEE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNVP----SG---QAIF 239 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~p----~~---D~i~ 239 (345)
..++|||+=|=||.++...+... -.+++.+|+ ...++-|+ ++.++.+|.|+.+. .+ |+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 37899999999999999887653 238999999 66666655 68999999998433 23 9998
Q ss_pred ecc------ccccCC-hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKS------VLLNWS-DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~------vlh~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+-= -=.-|+ ..+-.+++..+.+.|+| ||.++++
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~ 335 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTS 335 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 721 001122 12346789999999999 9998888
No 258
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=93.74 E-value=0.14 Score=47.14 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=50.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV 230 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~ 230 (345)
.+++++.+. ......+||.=+|.|..+..++++.|+.+++++|. |.+++.++ |++++.++|.+
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 346667665 45567899999999999999999988899999999 87777665 56666666653
No 259
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.47 E-value=0.84 Score=40.22 Aligned_cols=148 Identities=17% Similarity=0.108 Sum_probs=84.7
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehh--hH---hhhCCCceEEec-cCCcCCC----CC-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLP--YV---IKNAPCVEHVEG-DMFVNVP----SG-Q 236 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp--~~---i~~a~ri~~~~g-d~~~~~p----~~-D 236 (345)
..+++.|+-......+||||..||.++..++++- -.+++.+|.- ++ +..-.|+..++. |+..-.| +. |
T Consensus 68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCC
Confidence 3456666622356789999999999999999874 3468888872 23 222225544443 4433112 12 6
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHH
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~ 316 (345)
++++--.+ -....+|..+...++| ++.++.. +.|.-..+. .....--....+........++.
T Consensus 147 ~~v~DvSF-----ISL~~iLp~l~~l~~~---~~~~v~L---vKPQFEagr------~~v~kkGvv~d~~~~~~v~~~i~ 209 (245)
T COG1189 147 LIVIDVSF-----ISLKLILPALLLLLKD---GGDLVLL---VKPQFEAGR------EQVGKKGVVRDPKLHAEVLSKIE 209 (245)
T ss_pred eEEEEeeh-----hhHHHHHHHHHHhcCC---CceEEEE---ecchhhhhh------hhcCcCceecCcchHHHHHHHHH
Confidence 66554222 2345789999999999 7765554 222211000 00000000011122344567889
Q ss_pred HHHHHCCCCceEEEecC
Q 044482 317 ALAMAAGFGTIKVICRS 333 (345)
Q Consensus 317 ~ll~~aGf~~~~~~~~~ 333 (345)
+++++.||++..+...+
T Consensus 210 ~~~~~~g~~~~gl~~Sp 226 (245)
T COG1189 210 NFAKELGFQVKGLIKSP 226 (245)
T ss_pred HHHhhcCcEEeeeEccC
Confidence 99999999998886554
No 260
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=93.34 E-value=0.12 Score=47.92 Aligned_cols=99 Identities=30% Similarity=0.515 Sum_probs=70.4
Q ss_pred CcccCCCchhhhhhcCHHHHHHHHHHHHHhhhh-c---------cccccceeeccCCCchhHHHHHHHcCCCcccCCCcc
Q 044482 1 MRAHNGLHLFDYASKDARLQNLFNQSMHNHTAI-G---------FEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLP 70 (345)
Q Consensus 1 ~~~~~g~~~~~~~~~~~~~~~~f~~~~~l~~a~-~---------l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~ 70 (345)
+..++|+.+|+|...+++....|+.+|.-..-+ . ++++-.++|+|||-|..+..|...++.+++++||.|
T Consensus 131 ~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp 210 (342)
T KOG3178|consen 131 FATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLP 210 (342)
T ss_pred CccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHH
Confidence 357899999999999998777777777422111 1 223566789999999999999999999999999888
Q ss_pred ccccccCCCCccCceeeEEeEeeecCCCccc
Q 044482 71 HVIENASSSPVSRNISTIDVVMYNLFPGAKE 101 (345)
Q Consensus 71 ~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~ 101 (345)
..+..-- .+. -|+=...++.|..+|.+..
T Consensus 211 ~v~~~a~-~~~-~gV~~v~gdmfq~~P~~da 239 (342)
T KOG3178|consen 211 FVLAAAP-YLA-PGVEHVAGDMFQDTPKGDA 239 (342)
T ss_pred HHHhhhh-hhc-CCcceecccccccCCCcCe
Confidence 7664322 333 4522333458888888874
No 261
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=93.20 E-value=0.47 Score=45.28 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=63.0
Q ss_pred HHHHHHhccCcccccceEEecCCccH----HHHHHHHHC---CCCeEEEeehhh-----Hhhh--------CC----Cce
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGA----NMSLIVNTY---PQITGINFDLPY-----VIKN--------AP----CVE 222 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~----~~~~l~~~~---p~~~~~~~Dlp~-----~i~~--------a~----ri~ 222 (345)
...|++.+. -...-.|+|+|-|.|. +..+|+++. |.+++|+++.|. .++. |+ ..+
T Consensus 99 NqaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 99 NQAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred hHHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 346777776 4455689999999997 555666553 778999999843 2222 21 233
Q ss_pred EEe--ccCCcCC-C------CCCEE--EeccccccCChh------HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 223 HVE--GDMFVNV-P------SGQAI--FTKSVLLNWSDE------QCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 223 ~~~--gd~~~~~-p------~~D~i--~~~~vlh~~~d~------~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
|.. .+-.+.+ + +++++ -+..-||+..++ ....+|+.++ .|+| . .++++ |.-.+.
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P---~-vvv~~-E~ea~~ 248 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP---K-VVVLV-EQEADH 248 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC---C-EEEEE-eecCCC
Confidence 433 2222221 1 23443 345556888643 2345777665 8899 3 34444 665443
No 262
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.14 E-value=0.035 Score=42.70 Aligned_cols=86 Identities=20% Similarity=0.313 Sum_probs=43.5
Q ss_pred CEEEecccc----ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCC
Q 044482 236 QAIFTKSVL----LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRT 311 (345)
Q Consensus 236 D~i~~~~vl----h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt 311 (345)
|+|+|-+|. -+|.|+-..++|+++++.|+| ||.+++- + ++..... ....... .+.... ..-...
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p---GG~lilE--p----Q~w~sY~-~~~~~~~-~~~~n~-~~i~lr 70 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP---GGILILE--P----QPWKSYK-KAKRLSE-EIRENY-KSIKLR 70 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE---------HHHHH-TTTTS-H-HHHHHH-HH----
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC---CCEEEEe--C----CCcHHHH-HHhhhhH-HHHhHH-hceEEC
Confidence 677765543 378899999999999999999 8876665 1 1111100 0000011 011111 122234
Q ss_pred HHHHHHHHHH--CCCCceEEEecC
Q 044482 312 AGEFKALAMA--AGFGTIKVICRS 333 (345)
Q Consensus 312 ~~e~~~ll~~--aGf~~~~~~~~~ 333 (345)
.+++.++|.+ .||+..+....+
T Consensus 71 P~~F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 71 PDQFEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp GGGHHHHHTSTTT---EEEEE---
T ss_pred hHHHHHHHHhcccceEEEEEcccC
Confidence 5678898877 699988765554
No 263
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.12 E-value=0.034 Score=45.36 Aligned_cols=37 Identities=24% Similarity=0.414 Sum_probs=35.4
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|+..||+.|++-++-...++.|++.||| ||+|-|.
T Consensus 49 d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriA 85 (185)
T COG4627 49 DAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIA 85 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEE
Confidence 999999999999999999999999999999 9998776
No 264
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=92.97 E-value=0.016 Score=40.80 Aligned_cols=53 Identities=8% Similarity=0.040 Sum_probs=41.3
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCC
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFP 97 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~ 97 (345)
|.++|...|+++.|+.+||+++|+ ....+.++|..|...|++...+ +.|.++.
T Consensus 11 IL~~L~~~g~~~~ta~eLa~~lgl-------~~~~v~r~L~~L~~~G~V~~~~~~~~~W~i~~ 66 (68)
T smart00550 11 ILEFLENSGDETSTALQLAKNLGL-------PKKEVNRVLYSLEKKGKVCKQGGTPPLWKLTD 66 (68)
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEecCCCCCceEeec
Confidence 566663333335999999999999 6789999999999999998754 3666654
No 265
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=92.94 E-value=0.41 Score=46.59 Aligned_cols=129 Identities=13% Similarity=0.141 Sum_probs=84.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hh----HhhhCC--CceEEeccCCcCC---CCC-CEEEeccccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PY----VIKNAP--CVEHVEGDMFVNV---PSG-QAIFTKSVLL 245 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~----~i~~a~--ri~~~~gd~~~~~---p~~-D~i~~~~vlh 245 (345)
+...+.|+|...|.|.|+.+|.+. | +.++.. |. .+...- .+--+-+|.-+++ |.. |++...+++-
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhh
Confidence 556688999999999999999753 3 444443 22 222111 2333345665544 445 9999999997
Q ss_pred cCChh-HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCC
Q 044482 246 NWSDE-QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 246 ~~~d~-~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf 324 (345)
.+.+. +...||-++-|.|+| +|.++|- |.+ + . ..+.+.+++.-.+
T Consensus 439 ~~~~rC~~~~illEmDRILRP---~G~~iiR-D~~-----------------~------v-------l~~v~~i~~~lrW 484 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRP---GGWVIIR-DTV-----------------D------V-------LEKVKKIAKSLRW 484 (506)
T ss_pred hhcccccHHHHHHHhHhhcCC---CceEEEe-ccH-----------------H------H-------HHHHHHHHHhCcc
Confidence 77654 456799999999999 9998888 421 0 1 3556777777777
Q ss_pred CceEEEecCC---ceEEEEEEc
Q 044482 325 GTIKVICRSY---CYWVIEFYK 343 (345)
Q Consensus 325 ~~~~~~~~~~---~~~vi~~~k 343 (345)
+........+ ...|+.|+|
T Consensus 485 ~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 485 EVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred eEEEEecCCCCCCCceEEEEEC
Confidence 6544433332 367777775
No 266
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=92.86 E-value=0.014 Score=52.22 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=45.9
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE--eeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV--MYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~--~y~~t~~s~~ 101 (345)
|.++| ..++.+.++.|||+++|+ +...+.|+|..|+..|++++++. +|++++-.-.
T Consensus 9 iL~~l-~~~~~~l~l~ela~~~gl-------pksT~~RlL~tL~~~G~v~~d~~~g~Y~Lg~~~~~ 66 (246)
T COG1414 9 ILDLL-AEGPGGLSLAELAERLGL-------PKSTVHRLLQTLVELGYVEQDPEDGRYRLGPRLLE 66 (246)
T ss_pred HHHHH-HhCCCCCCHHHHHHHhCc-------CHHHHHHHHHHHHHCCCEEEcCCCCcEeehHHHHH
Confidence 66777 333334679999999999 68899999999999999999873 7999876644
No 267
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=92.83 E-value=0.17 Score=46.61 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=44.5
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMF 229 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~ 229 (345)
..++++.+. ......+||.=-|.|..+.++++++|+.+++++|. |.+++.++ |+.++.++|-
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 356677776 56678999999999999999999999999999999 88886554 5666666653
No 268
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=92.77 E-value=0.12 Score=43.96 Aligned_cols=94 Identities=15% Similarity=0.083 Sum_probs=58.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCC-----C-CC-CEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNV-----P-SG-QAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~-----p-~~-D~i~~ 240 (345)
...++||+=||+|.++.+.+.+. -.+++.+|. +..+...+ +++.+.+|++..+ . .. |+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 34789999999999999988775 237888887 55444333 5788899977622 2 23 99988
Q ss_pred ccccccCChhHHHHHHHHHH--hhCCCCCCCcEEEEEeccCC
Q 044482 241 KSVLLNWSDEQCLKILKNCY--DALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~--~aL~p~~~gG~lli~~d~~~ 280 (345)
-=-...... ..++|..+. ..|++ +| ++|+ |.-.
T Consensus 121 DPPY~~~~~--~~~~l~~l~~~~~l~~---~~-~ii~-E~~~ 155 (183)
T PF03602_consen 121 DPPYAKGLY--YEELLELLAENNLLNE---DG-LIII-EHSK 155 (183)
T ss_dssp --STTSCHH--HHHHHHHHHHTTSEEE---EE-EEEE-EEET
T ss_pred CCCcccchH--HHHHHHHHHHCCCCCC---CE-EEEE-EecC
Confidence 644432211 245666665 67888 66 5555 5433
No 269
>PRK11569 transcriptional repressor IclR; Provisional
Probab=92.73 E-value=0.017 Score=52.63 Aligned_cols=55 Identities=7% Similarity=-0.059 Sum_probs=45.0
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe--EeeecCCCcc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV--VMYNLFPGAK 100 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~--~~y~~t~~s~ 100 (345)
|.+++ .....+.++.|||+++|+ +..-+.|+|..|+..|++++++ .+|++++..-
T Consensus 33 IL~~l-~~~~~~~~lseia~~lgl-------pksTv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l~ 89 (274)
T PRK11569 33 LLEWI-AESNGSVALTELAQQAGL-------PNSTTHRLLTTMQQQGFVRQVGELGHWAIGAHAF 89 (274)
T ss_pred HHHHH-HhCCCCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEcCCCCeEecCHHHH
Confidence 66777 433457999999999999 6788999999999999998864 4898876654
No 270
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=92.72 E-value=0.018 Score=52.34 Aligned_cols=55 Identities=9% Similarity=-0.068 Sum_probs=44.8
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe--EeeecCCCcc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV--VMYNLFPGAK 100 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~--~~y~~t~~s~ 100 (345)
|.+++ ...+++.++.|||+++|+ +...+.|+|..|+..|++.+++ ..|.+++..-
T Consensus 30 IL~~~-~~~~~~~tl~eIa~~lgl-------pkStv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l~ 86 (271)
T PRK10163 30 ILQYL-EKSGGSSSVSDISLNLDL-------PLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVF 86 (271)
T ss_pred HHHHH-HhCCCCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEcCCCCeEEecHHHH
Confidence 67777 333457999999999999 6789999999999999998864 3798876554
No 271
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=92.55 E-value=0.015 Score=43.31 Aligned_cols=54 Identities=9% Similarity=0.017 Sum_probs=42.2
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe--EeeecCCCc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV--VMYNLFPGA 99 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~--~~y~~t~~s 99 (345)
|.+.| ...+.+.|..+||+.++. ....+.|.|+.|...|++.+.. +.|.+++..
T Consensus 10 Il~~l-~~~~~~~t~~~ia~~l~i-------~~~tv~r~l~~L~~~g~l~~~~~~~~y~l~~~~ 65 (91)
T smart00346 10 VLRAL-AEEPGGLTLAELAERLGL-------SKSTAHRLLNTLQELGYVEQDGQNGRYRLGPKV 65 (91)
T ss_pred HHHHH-HhCCCCcCHHHHHHHhCC-------CHHHHHHHHHHHHHCCCeeecCCCCceeecHHH
Confidence 66677 333237999999999999 6789999999999999998753 367776543
No 272
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=92.11 E-value=0.15 Score=49.59 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=41.4
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV 230 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~ 230 (345)
.+....++|+-||+|.++.++++.. .+++++++ |+.++.|+ +++|++|-..+
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 5666889999999999999999875 46788887 77777665 78999994333
No 273
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.07 E-value=0.81 Score=37.22 Aligned_cols=102 Identities=17% Similarity=0.246 Sum_probs=65.7
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~ 234 (345)
.+.+++.++ -....+.+|+|.|.|....+.++.. -...+++++ |-.+..++ +..|...|.++ ++.+
T Consensus 61 v~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 61 VENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred HHHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 345566555 3344799999999999988877765 345788888 65555443 67888888888 5554
Q ss_pred C-CEEEe-c-cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 235 G-QAIFT-K-SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 235 ~-D~i~~-~-~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
- .++++ . .++. .+--+++.-|+. +.+++-+ -+-+|+
T Consensus 139 y~~vviFgaes~m~--------dLe~KL~~E~p~---nt~vvac-RFPLP~ 177 (199)
T KOG4058|consen 139 YRNVVIFGAESVMP--------DLEDKLRTELPA---NTRVVAC-RFPLPT 177 (199)
T ss_pred cceEEEeehHHHHh--------hhHHHHHhhCcC---CCeEEEE-ecCCCc
Confidence 3 33332 2 2222 233345556777 8888888 665554
No 274
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.72 E-value=0.28 Score=47.54 Aligned_cols=95 Identities=15% Similarity=0.147 Sum_probs=61.9
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-----
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP----- 233 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p----- 233 (345)
.+.+..+ ..+..+|+|+=||.|.++..++++. .+++++++ |+.++.|+ +++|+.+|..+-.+
T Consensus 284 ~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~ 360 (432)
T COG2265 284 TALEWLE-LAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEG 360 (432)
T ss_pred HHHHHHh-hcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcccc
Confidence 3444444 4556789999999999999999554 47888898 77777766 78999999877221
Q ss_pred CC-CEEEeccccccCChhHHH-HHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 SG-QAIFTKSVLLNWSDEQCL-KILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 ~~-D~i~~~~vlh~~~d~~~~-~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.. |+|++- =|..-+. .+++.+.+ ++| -.-++|.
T Consensus 361 ~~~d~VvvD-----PPR~G~~~~~lk~l~~-~~p---~~IvYVS 395 (432)
T COG2265 361 YKPDVVVVD-----PPRAGADREVLKQLAK-LKP---KRIVYVS 395 (432)
T ss_pred CCCCEEEEC-----CCCCCCCHHHHHHHHh-cCC---CcEEEEe
Confidence 12 776642 2222222 44555544 555 4445555
No 275
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=91.68 E-value=0.059 Score=34.57 Aligned_cols=41 Identities=2% Similarity=-0.061 Sum_probs=35.3
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecC
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLF 96 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t 96 (345)
+.+..+||+.++. ....+.+.|+.|...|+++...+.|..+
T Consensus 8 ~~s~~~la~~l~~-------s~~tv~~~l~~L~~~g~l~~~~~~~~i~ 48 (48)
T smart00419 8 PLTRQEIAELLGL-------TRETVSRTLKRLEKEGLISREGGRIVIL 48 (48)
T ss_pred ccCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEEeCCEEEEC
Confidence 5799999999999 5788999999999999998776666543
No 276
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=91.67 E-value=0.14 Score=48.40 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=41.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDM 228 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~ 228 (345)
...+++.++ ..+. +|||+=||.|.++..+++... +++++|. ++.++.|+ +++|+.++.
T Consensus 186 ~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 186 YEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 344555555 3333 799999999999999998874 6888888 77777666 688887664
No 277
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=91.64 E-value=0.46 Score=44.42 Aligned_cols=93 Identities=17% Similarity=0.123 Sum_probs=70.5
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC---CCCEEEeccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP---SGQAIFTKSV 243 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p---~~D~i~~~~v 243 (345)
..+.+|||.=+|.|.++..++++-.- +++.+|+ |..++..+ +++.+.||..+-.+ .+|-|+|.+.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 34789999999999999999987533 3999999 76655433 58899999988333 3599998865
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
- .+.+.+-.+.+.+++ ||.+... +.+..
T Consensus 266 ~------~a~~fl~~A~~~~k~---~g~iHyy-~~~~e 293 (341)
T COG2520 266 K------SAHEFLPLALELLKD---GGIIHYY-EFVPE 293 (341)
T ss_pred C------cchhhHHHHHHHhhc---CcEEEEE-eccch
Confidence 4 224667778888999 8988888 66543
No 278
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=91.61 E-value=0.032 Score=50.52 Aligned_cols=56 Identities=5% Similarity=-0.012 Sum_probs=45.4
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe--EeeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV--VMYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~--~~y~~t~~s~~ 101 (345)
|.+.| ...+++.++.|||+++++ +...+.|+|+.|...|+++++. ..|++++....
T Consensus 16 iL~~l-~~~~~~ls~~eia~~lgl-------~kstv~RlL~tL~~~g~v~~~~~~~~Y~Lg~~~~~ 73 (263)
T PRK09834 16 VLRAL-NRLDGGATVGLLAELTGL-------HRTTVRRLLETLQEEGYVRRSASDDSFRLTLKVRQ 73 (263)
T ss_pred HHHHH-HhcCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEecCCCcEEEcHHHHH
Confidence 66666 333346999999999999 6789999999999999998874 48999876644
No 279
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.33 E-value=0.52 Score=44.53 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=68.3
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCC---------------------------------------eEEE
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQI---------------------------------------TGIN 208 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~---------------------------------------~~~~ 208 (345)
..++..-. |.....++|==||+|+++++.+...+++ ..++
T Consensus 181 aAil~lag-w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 181 AAILLLAG-WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHHcC-CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 34444334 7777899999999999999988877532 2679
Q ss_pred eeh-hhHhhhCC----------CceEEeccCCc-CCC-CC-CEEEecc--ccccCChhHHHH-HH----HHHHhhCCCCC
Q 044482 209 FDL-PYVIKNAP----------CVEHVEGDMFV-NVP-SG-QAIFTKS--VLLNWSDEQCLK-IL----KNCYDALPKSR 267 (345)
Q Consensus 209 ~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p-~~-D~i~~~~--vlh~~~d~~~~~-iL----~~~~~aL~p~~ 267 (345)
.|+ +.+++.|+ .|+|..+|+.. .-| .. |+|+++- -.. +.++..+. +- +.+++.++-
T Consensus 260 ~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~~-- 336 (381)
T COG0116 260 SDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLAG-- 336 (381)
T ss_pred ecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhcC--
Confidence 999 88888776 59999999886 333 33 8888862 222 22332222 33 444455555
Q ss_pred CCcEEEEE
Q 044482 268 KHGRTQLR 275 (345)
Q Consensus 268 ~gG~lli~ 275 (345)
.++.++.
T Consensus 337 -ws~~v~t 343 (381)
T COG0116 337 -WSRYVFT 343 (381)
T ss_pred -CceEEEE
Confidence 5666666
No 280
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=91.30 E-value=0.035 Score=50.01 Aligned_cols=55 Identities=5% Similarity=-0.067 Sum_probs=44.9
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe--EeeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV--VMYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~--~~y~~t~~s~~ 101 (345)
|.+.+ ... ++.|+.|||+++|+ +...+.|+|+.|+..|++++++ ++|.+++..-.
T Consensus 19 IL~~l-~~~-~~l~l~eia~~lgl-------~kstv~Rll~tL~~~G~l~~~~~~~~Y~lG~~~~~ 75 (257)
T PRK15090 19 ILQAL-GEE-REIGITELSQRVMM-------SKSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFE 75 (257)
T ss_pred HHHHh-hcC-CCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEcCCCCcEEecHHHHH
Confidence 66666 333 36899999999999 6789999999999999998864 48999876644
No 281
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.02 E-value=0.89 Score=39.79 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=67.2
Q ss_pred HHhccCcccccceEEecCCccHHHHHHHHH-CCCC--------eEEEeehhhHhhhCCCceEEeccCCcC---------C
Q 044482 171 LEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQI--------TGINFDLPYVIKNAPCVEHVEGDMFVN---------V 232 (345)
Q Consensus 171 ~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~--------~~~~~Dlp~~i~~a~ri~~~~gd~~~~---------~ 232 (345)
-+.|.-|.+..++||+....|.++.-+.++ |..+ +++.+|+..|...- .+.-+++|+.++ +
T Consensus 33 deef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~-GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 33 DEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIE-GVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccC-ceEEeecccCCHhHHHHHHHHh
Confidence 344544667889999999999999998876 3211 28999997764432 566677777651 2
Q ss_pred C--CCCEEEec-----cccccCChhHHHH----HHHHHHhhCCCCCCCcEEEE
Q 044482 233 P--SGQAIFTK-----SVLLNWSDEQCLK----ILKNCYDALPKSRKHGRTQL 274 (345)
Q Consensus 233 p--~~D~i~~~-----~vlh~~~d~~~~~----iL~~~~~aL~p~~~gG~lli 274 (345)
. ++|+|++- .-+|+++.-.-.+ .|.-...+|+| ||.++-
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FVa 161 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFVA 161 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeeeh
Confidence 2 23999985 4578876543233 34445678999 998753
No 282
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.99 E-value=3.2 Score=34.69 Aligned_cols=117 Identities=13% Similarity=0.116 Sum_probs=70.7
Q ss_pred ecCCccHHHHHHHHHCC---CCeEEEeehhh-HhhhCC------------CceEEe-ccCCc--C-C--CCC--CEEEec
Q 044482 186 VASCLGANMSLIVNTYP---QITGINFDLPY-VIKNAP------------CVEHVE-GDMFV--N-V--PSG--QAIFTK 241 (345)
Q Consensus 186 iGgG~G~~~~~l~~~~p---~~~~~~~Dlp~-~i~~a~------------ri~~~~-gd~~~--~-~--p~~--D~i~~~ 241 (345)
||=|.-.++.+|+++++ ++..+.+|-.+ +.+.-+ ++++.- .|..+ . . ... |.|+++
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 67788889999999987 45567888733 333222 344333 35554 1 2 122 888876
Q ss_pred cccccC-----------ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccC
Q 044482 242 SVLLNW-----------SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGR 310 (345)
Q Consensus 242 ~vlh~~-----------~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r 310 (345)
.----. ..+-...+|+.+.+.|++ +|.|.|. +. .+..+
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVT----l~------------------------~~~py 131 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVT----LK------------------------DGQPY 131 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE----eC------------------------CCCCC
Confidence 443220 011234678889999999 9999998 11 11112
Q ss_pred CHHHHHHHHHHCCCCceEEEecC
Q 044482 311 TAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 311 t~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
+.=+++++.+++||..++..+..
T Consensus 132 ~~W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 132 DSWNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred ccccHHHHHHhcCCEEEEEecCC
Confidence 22234678888999888876654
No 283
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=90.95 E-value=0.064 Score=39.29 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=38.4
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCCCccc
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFPGAKE 101 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~ 101 (345)
.+.|.++||+++++ .+..+++++..|...|+++... +.|.++.-.+.
T Consensus 24 ~~~s~~eiA~~~~i-------~~~~l~kil~~L~~~Gli~s~~G~~GGy~L~~~~~~ 73 (83)
T PF02082_consen 24 KPVSSKEIAERLGI-------SPSYLRKILQKLKKAGLIESSRGRGGGYRLARPPEE 73 (83)
T ss_dssp C-BEHHHHHHHHTS--------HHHHHHHHHHHHHTTSEEEETSTTSEEEESS-CCG
T ss_pred CCCCHHHHHHHHCc-------CHHHHHHHHHHHhhCCeeEecCCCCCceeecCCHHH
Confidence 35899999999999 7999999999999999997763 38888876654
No 284
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=90.91 E-value=2.4 Score=39.60 Aligned_cols=94 Identities=17% Similarity=0.098 Sum_probs=67.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------C---ceEEec-cCCc-CCCCC--CEEEecc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------C---VEHVEG-DMFV-NVPSG--QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------r---i~~~~g-d~~~-~~p~~--D~i~~~~ 242 (345)
...+..|+|==||||.+++...-- ++++++.|+ ..|++.++ + ..+..+ |+.. |+++. |.|.+--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 445678999999999999886543 688999999 67888777 2 334444 8877 77753 7776521
Q ss_pred c------cccCC-hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 V------LLNWS-DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 v------lh~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
- ..--. ++--.++|..+.+.|++ ||++++.
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~ 309 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFA 309 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEe
Confidence 1 11111 34457899999999999 9988887
No 285
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=90.76 E-value=1.7 Score=37.55 Aligned_cols=96 Identities=11% Similarity=0.104 Sum_probs=51.7
Q ss_pred ccceEEecCCccH---HHHHHHHHC-CCCeEEEeeh--hh----HhhhC---CCceEEeccCCcC---CC-----C-C-C
Q 044482 180 LKKLVDVASCLGA---NMSLIVNTY-PQITGINFDL--PY----VIKNA---PCVEHVEGDMFVN---VP-----S-G-Q 236 (345)
Q Consensus 180 ~~~vlDiGgG~G~---~~~~l~~~~-p~~~~~~~Dl--p~----~i~~a---~ri~~~~gd~~~~---~p-----~-~-D 236 (345)
+.+|+++|--.|. +...+++.. ++.+++++|+ +. .++.- .||++++||-.++ .+ . . -
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 4799999955555 444555665 7889999998 21 23321 2999999998652 11 1 1 2
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
++++-..=|.+ +.+.+.|+.....+++ |+.++|- |....
T Consensus 113 vlVilDs~H~~--~hvl~eL~~y~plv~~---G~Y~IVe-Dt~~~ 151 (206)
T PF04989_consen 113 VLVILDSSHTH--EHVLAELEAYAPLVSP---GSYLIVE-DTIIE 151 (206)
T ss_dssp EEEEESS------SSHHHHHHHHHHT--T---T-EEEET-SHHHH
T ss_pred eEEEECCCccH--HHHHHHHHHhCccCCC---CCEEEEE-ecccc
Confidence 33333333332 3457889999999999 8888887 66543
No 286
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=90.26 E-value=0.061 Score=37.48 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=34.2
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCC
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPG 98 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~ 98 (345)
.+.+..+||+.++. +...+.+.++.|...|++++..+ .|++||.
T Consensus 17 ~~~t~~~l~~~~~~-------~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~ 67 (68)
T PF13463_consen 17 GPMTQSDLAERLGI-------SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPA 67 (68)
T ss_dssp S-BEHHHHHHHTT---------HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HH
T ss_pred CCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCC
Confidence 36899999999999 67888999999999999977643 6777764
No 287
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=90.10 E-value=0.097 Score=36.23 Aligned_cols=42 Identities=7% Similarity=0.028 Sum_probs=37.2
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-EeeecCC
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-VMYNLFP 97 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-~~y~~t~ 97 (345)
+.|..+||+.+++ .+..+.+.++.|...|++.... +.|.++|
T Consensus 25 ~~s~~ela~~~g~-------s~~tv~r~l~~L~~~g~i~~~~~~~~~l~~ 67 (67)
T cd00092 25 PLTRQEIADYLGL-------TRETVSRTLKELEEEGLISRRGRGKYRVNP 67 (67)
T ss_pred CcCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEecCCCeEEeCC
Confidence 5899999999999 6788999999999999998877 6787764
No 288
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=89.58 E-value=0.085 Score=36.96 Aligned_cols=36 Identities=8% Similarity=-0.043 Sum_probs=33.1
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV 91 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~ 91 (345)
+.|+.+||+.+++ ....+.+.|+.|...|++++..+
T Consensus 22 ~~t~~eIa~~l~i-------~~~~v~~~L~~L~~~GlV~~~~~ 57 (68)
T PF01978_consen 22 PATAEEIAEELGI-------SRSTVYRALKSLEEKGLVEREEG 57 (68)
T ss_dssp HEEHHHHHHHHTS-------SHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEEcC
Confidence 6899999999999 68899999999999999988765
No 289
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.27 E-value=0.83 Score=47.08 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=24.3
Q ss_pred cceEEecCCccHHHHHHHHHC-------C-----CCeEEEeeh
Q 044482 181 KKLVDVASCLGANMSLIVNTY-------P-----QITGINFDL 211 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~-------p-----~~~~~~~Dl 211 (345)
-+|+|+|=|+|.......+.+ | .++++.++.
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~ 101 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEK 101 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEEC
Confidence 589999999999877777544 4 467888885
No 290
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=89.19 E-value=0.5 Score=43.21 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=65.1
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCCC----CC--CEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNVP----SG--QAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~p----~~--D~i~~ 240 (345)
...+|||+=|=+|.++...+. ..-.+++.+|. ...++.++ +++++.+|+|+.+. .+ |+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 457999999999999998664 33447999999 66666554 78999999997332 22 99987
Q ss_pred c---cccccCC-hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 K---SVLLNWS-DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~---~vlh~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
- ..=..+. ...-.++++++.+.|+| ||.|+.+
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~ 237 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTC 237 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 2 1111122 12346799999999999 9988777
No 291
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=88.86 E-value=0.8 Score=41.61 Aligned_cols=95 Identities=18% Similarity=0.158 Sum_probs=64.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCC-eEEEeeh-hhHhhhCC-------------CceEEeccCCc---CCCCC--C
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQI-TGINFDL-PYVIKNAP-------------CVEHVEGDMFV---NVPSG--Q 236 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~---~~p~~--D 236 (345)
..+..+++=||||.|.+.+...++ +.+ .+..+|. ..+++..+ ++....||-+. ..+.+ |
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 456789999999999999998877 665 4677777 55555443 89999998776 33333 8
Q ss_pred EEEeccccccCChhH--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLLNWSDEQ--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|+.-.-=-.-+-.. -...+.-+.++||+ +|.+++.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q 235 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKG---DGVVCTQ 235 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCC---CcEEEEe
Confidence 887642210001000 12456668899999 9988877
No 292
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=88.81 E-value=0.97 Score=41.27 Aligned_cols=63 Identities=22% Similarity=0.270 Sum_probs=51.3
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCe-EEEeeh-hhHhhhCC--------CceEEeccCCc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQIT-GINFDL-PYVIKNAP--------CVEHVEGDMFV 230 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~-~~~~Dl-p~~i~~a~--------ri~~~~gd~~~ 230 (345)
..++++.+. ......+||.==|.|..+.++++++|... .+++|. |..++.|+ |+.++.++|-+
T Consensus 12 l~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 12 LNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 346667776 56668999999999999999999999765 999999 88888877 67777776643
No 293
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=88.48 E-value=1.6 Score=42.37 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=70.1
Q ss_pred ceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC--CEEEeccccccCC
Q 044482 182 KLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWS 248 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~ 248 (345)
+++-+|||.-.+...+-+. |. .++.+|. +.+++... -+.+...|+.. .+++. |+++.+..++++-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 8999999999888776654 33 4677777 33344332 47888899988 77743 9999999998754
Q ss_pred hh--------HHHHHHHHHHhhCCCCCCCcEEEEEeccC--CCCCC
Q 044482 249 DE--------QCLKILKNCYDALPKSRKHGRTQLRSKRG--LPESP 284 (345)
Q Consensus 249 d~--------~~~~iL~~~~~aL~p~~~gG~lli~~d~~--~~~~~ 284 (345)
.+ .+...+.++.+.|+| ||+.+.+ ... .+..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~---~gk~~sv-tl~~~vp~~r 170 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAP---GGKYISV-TLVQVVPQGR 170 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhcc---CCEEEEE-EeeeeccCCC
Confidence 33 233468899999999 9998888 663 44443
No 294
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=88.01 E-value=0.068 Score=37.67 Aligned_cols=45 Identities=9% Similarity=0.202 Sum_probs=35.3
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV 91 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~ 91 (345)
|.++| ...| .+|..+||.++++ +|+.++.+|..|+..|.+++...
T Consensus 5 i~~~l-~~~~-~~S~~eLa~~~~~-------s~~~ve~mL~~l~~kG~I~~~~~ 49 (69)
T PF09012_consen 5 IRDYL-RERG-RVSLAELAREFGI-------SPEAVEAMLEQLIRKGYIRKVDM 49 (69)
T ss_dssp HHHHH-HHS--SEEHHHHHHHTT---------HHHHHHHHHHHHCCTSCEEEEE
T ss_pred HHHHH-HHcC-CcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCcEEEecC
Confidence 45666 3333 5899999999999 79999999999999999987653
No 295
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=87.19 E-value=2.9 Score=35.62 Aligned_cols=93 Identities=11% Similarity=-0.005 Sum_probs=59.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcC---CC-C--CCEEEec
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVN---VP-S--GQAIFTK 241 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~---~p-~--~D~i~~~ 241 (345)
...++||+=+|+|.++.+.+.+.- .+++.+|. ...+...+ +++++..|...- .+ . -|+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 457999999999999999998863 46788887 33322221 678888888752 22 2 3999987
Q ss_pred cccc-cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 242 SVLL-NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 242 ~vlh-~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
=-.+ ..-+.+...++-.-...|+| +|.+++-
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~---~~~iv~E 153 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKP---GALIVVE 153 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCC---CcEEEEE
Confidence 6655 22222222223234567999 7755554
No 296
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=86.28 E-value=0.29 Score=39.48 Aligned_cols=48 Identities=13% Similarity=-0.060 Sum_probs=39.3
Q ss_pred CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCCCccc
Q 044482 47 GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFPGAKE 101 (345)
Q Consensus 47 g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~ 101 (345)
+++.|.++||+++++ ++..++++|+.|...|++.... +.|.++.-.+.
T Consensus 23 ~~~~s~~~ia~~~~i-------p~~~l~kil~~L~~~glv~s~~G~~Ggy~l~~~~~~ 73 (135)
T TIGR02010 23 TGPVTLADISERQGI-------SLSYLEQLFAKLRKAGLVKSVRGPGGGYQLGRPAED 73 (135)
T ss_pred CCcCcHHHHHHHHCc-------CHHHHHHHHHHHHHCCceEEEeCCCCCEeccCCHHH
Confidence 347899999999999 7899999999999999996542 27887665543
No 297
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=86.05 E-value=1.7 Score=38.86 Aligned_cols=93 Identities=18% Similarity=0.194 Sum_probs=51.8
Q ss_pred cceEEecCCccHHHHH---HHHHC--CCCeEEEeeh----hhHhhh------------CC--------------------
Q 044482 181 KKLVDVASCLGANMSL---IVNTY--PQITGINFDL----PYVIKN------------AP-------------------- 219 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~---l~~~~--p~~~~~~~Dl----p~~i~~------------a~-------------------- 219 (345)
..|++.||-.|..+.. +++.+ ++-++.++|. |+.-.. ..
T Consensus 76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~ 155 (248)
T PF05711_consen 76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGLL 155 (248)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTTS
T ss_pred eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCCC
Confidence 7899999988876654 44444 4557899996 332110 00
Q ss_pred --CceEEeccCCcCCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 220 --CVEHVEGDMFVNVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 220 --ri~~~~gd~~~~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
++++++|.|.+.+|.. +-|-+-++=-+|=++ ....|..++..|.| ||.|++- |.
T Consensus 156 ~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYes-T~~aLe~lyprl~~---GGiIi~D-DY 213 (248)
T PF05711_consen 156 DDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYES-TKDALEFLYPRLSP---GGIIIFD-DY 213 (248)
T ss_dssp STTEEEEES-HHHHCCC-TT--EEEEEE---SHHH-HHHHHHHHGGGEEE---EEEEEES-ST
T ss_pred cccEEEECCcchhhhccCCCccEEEEEEeccchHH-HHHHHHHHHhhcCC---CeEEEEe-CC
Confidence 6889999998777742 323222222233233 36789999999999 7755555 54
No 298
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=86.01 E-value=0.075 Score=36.28 Aligned_cols=35 Identities=3% Similarity=0.001 Sum_probs=31.2
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
+.|..+||+.++. .+..+.++++.|...|++++..
T Consensus 21 ~~t~~~la~~l~~-------~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 21 ELTQSELAERLGI-------SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp GEEHHHHHHHHTS--------HHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEeC
Confidence 3899999999999 7889999999999999998764
No 299
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=85.49 E-value=10 Score=35.97 Aligned_cols=104 Identities=18% Similarity=0.182 Sum_probs=68.0
Q ss_pred HhccCcccccceEEecCCccHHHHHHHHHCCC--CeEEEeeh-hhHhh----hCC-----CceEEeccCCc---CCCC--
Q 044482 172 EIYKGFKELKKLVDVASCLGANMSLIVNTYPQ--ITGINFDL-PYVIK----NAP-----CVEHVEGDMFV---NVPS-- 234 (345)
Q Consensus 172 ~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~--~~~~~~Dl-p~~i~----~a~-----ri~~~~gd~~~---~~p~-- 234 (345)
..++ -....+|||...+.|.=+..+++.-++ ..++.+|. +.-+. ..+ ++..+..|... ..+.
T Consensus 150 ~~L~-p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 150 LVLD-PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred HHcC-CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccC
Confidence 3444 456689999999999999999998765 55689998 33222 222 45566666542 2221
Q ss_pred -CCEEEec------cc-------cccCChhHH-------HHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 235 -GQAIFTK------SV-------LLNWSDEQC-------LKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 235 -~D~i~~~------~v-------lh~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
.|.|++- .+ ...|+.++. .+||..+.+.||| ||.|+-. ...+
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYS-TCS~ 291 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYS-TCSL 291 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE-ccCC
Confidence 2666552 22 244444422 4799999999999 9988777 4443
No 300
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=84.28 E-value=3.5 Score=32.68 Aligned_cols=84 Identities=21% Similarity=0.165 Sum_probs=51.9
Q ss_pred CceEEeccCCcCCC---C-CCEEEecccc-----ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhh
Q 044482 220 CVEHVEGDMFVNVP---S-GQAIFTKSVL-----LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSIN 290 (345)
Q Consensus 220 ri~~~~gd~~~~~p---~-~D~i~~~~vl-----h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~ 290 (345)
++++.-||+.+-++ . .|++++-..- ..|+. .+|+++++.++| ||.+... .
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~----e~~~~l~~~~~~---~~~l~Ty-------s------- 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSE----ELFKKLARLSKP---GGTLATY-------S------- 90 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSH----HHHHHHHHHEEE---EEEEEES---------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCH----HHHHHHHHHhCC---CcEEEEe-------e-------
Confidence 45566666654222 1 2666654322 24555 479999999999 7755444 0
Q ss_pred hhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 291 RNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 291 ~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
. ...+++-|.++||++.+....+.-...+.+.||
T Consensus 91 -------------~-------a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 91 -------------S-------AGAVRRALQQAGFEVEKVPGFGRKREMLRAVKP 124 (124)
T ss_dssp ---------------------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC-
T ss_pred -------------c-------hHHHHHHHHHcCCEEEEcCCCCCcchheEEEcC
Confidence 0 233689999999998877766666788888875
No 301
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=84.26 E-value=4.1 Score=36.37 Aligned_cols=93 Identities=20% Similarity=0.128 Sum_probs=56.1
Q ss_pred cc-cccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---------------CceEEeccCCc------CCCC
Q 044482 177 FK-ELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---------------CVEHVEGDMFV------NVPS 234 (345)
Q Consensus 177 ~~-~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---------------ri~~~~gd~~~------~~p~ 234 (345)
|. ....||.+|+|+|..++.. .......++.-|.|.+++..+ .+....-+.-. -.|.
T Consensus 83 ~~~~~~~vlELGsGtglvG~~a-a~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 83 FKTKYINVLELGSGTGLVGILA-ALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred ccccceeEEEecCCccHHHHHH-HHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence 44 4568999999999555444 445577899999877655433 12222212111 1223
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 -GQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.|+|+.+.++++-. ...-+..-++.-|.. ++.+++.
T Consensus 162 ~~DlilasDvvy~~~--~~e~Lv~tla~ll~~---~~~i~l~ 198 (248)
T KOG2793|consen 162 PFDLILASDVVYEEE--SFEGLVKTLAFLLAK---DGTIFLA 198 (248)
T ss_pred cccEEEEeeeeecCC--cchhHHHHHHHHHhc---CCeEEEE
Confidence 48888888885433 233556666667777 7755555
No 302
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=84.20 E-value=0.3 Score=40.85 Aligned_cols=48 Identities=15% Similarity=-0.074 Sum_probs=39.6
Q ss_pred CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCCCccc
Q 044482 47 GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFPGAKE 101 (345)
Q Consensus 47 g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~ 101 (345)
+++.|+++||+++++ .+..+.++|..|...|++.... +.|.+..-.+.
T Consensus 23 ~~~vs~~eIA~~~~i-------p~~~l~kIl~~L~~aGLv~s~rG~~GGy~Lar~p~~ 73 (164)
T PRK10857 23 AGPVPLADISERQGI-------SLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASS 73 (164)
T ss_pred CCcCcHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEeCCCCCCCeeccCCHHH
Confidence 357999999999999 6899999999999999997642 37887655443
No 303
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.09 E-value=1.6 Score=41.67 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=49.7
Q ss_pred CceEEeccCCc---CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 220 CVEHVEGDMFV---NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 220 ri~~~~gd~~~---~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
|++++.+++.+ ..|++ |.+++..+.-.+++++..++++++.++++| ||+++.- ....+
T Consensus 276 rv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~R-sa~~~ 338 (380)
T PF11899_consen 276 RVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWR-SAAVP 338 (380)
T ss_pred eEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEe-eCCCC
Confidence 89999998877 35544 999999999888999999999999999999 9999998 55433
No 304
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=83.71 E-value=0.33 Score=38.76 Aligned_cols=47 Identities=13% Similarity=-0.026 Sum_probs=38.6
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCCCccc
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFPGAKE 101 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~ 101 (345)
.+.|.++||+++++ ++..+.++|+.|...|++.... +.|.++.-.+.
T Consensus 24 ~~~s~~eia~~~~i-------~~~~v~~il~~L~~~gli~~~~g~~ggy~l~~~~~~ 73 (132)
T TIGR00738 24 GPVSVKEIAERQGI-------SRSYLEKILRTLRRAGLVESVRGPGGGYRLARPPEE 73 (132)
T ss_pred CcCcHHHHHHHHCc-------CHHHHHHHHHHHHHCCcEEeccCCCCCccCCCCHHH
Confidence 47899999999999 7899999999999999997642 26777655543
No 305
>PRK10742 putative methyltransferase; Provisional
Probab=83.30 E-value=2.6 Score=37.55 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=33.4
Q ss_pred HHHHhccCccccc--ceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhH
Q 044482 169 KILEIYKGFKELK--KLVDVASCLGANMSLIVNTYPQITGINFDL-PYV 214 (345)
Q Consensus 169 ~i~~~~~~~~~~~--~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~ 214 (345)
.+++... .+... +|||.=+|.|..+..++.+ +++++.+|. |.+
T Consensus 77 ~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~v 122 (250)
T PRK10742 77 AVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVV 122 (250)
T ss_pred HHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHH
Confidence 4556555 55544 8999999999999999988 667999998 443
No 306
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=82.69 E-value=0.43 Score=39.27 Aligned_cols=46 Identities=17% Similarity=0.063 Sum_probs=39.7
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~ 101 (345)
+.|.++||++.++ .|..|++++..|...|+++-.. +.|.+..-.+.
T Consensus 25 ~~s~~~IA~~~~i-------s~~~L~kil~~L~kaGlV~S~rG~~GGy~Lar~~~~ 73 (150)
T COG1959 25 PVSSAEIAERQGI-------SPSYLEKILSKLRKAGLVKSVRGKGGGYRLARPPEE 73 (150)
T ss_pred cccHHHHHHHhCc-------CHHHHHHHHHHHHHcCCEEeecCCCCCccCCCChHH
Confidence 6899999999999 7999999999999999996543 38998876654
No 307
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=81.87 E-value=2.3 Score=40.10 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=35.3
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhH
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYV 214 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~ 214 (345)
.++..+..|.+...++|||.|.|++++-+.-.| ++++..+|-.+.
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~ 187 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQR 187 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchH
Confidence 344444447778899999999999999988777 788999997543
No 308
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=81.81 E-value=3.1 Score=39.06 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=41.4
Q ss_pred cCchhHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHH----CC----CCeEEEeeh-hhH
Q 044482 147 MLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNT----YP----QITGINFDL-PYV 214 (345)
Q Consensus 147 ~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~----~p----~~~~~~~Dl-p~~ 214 (345)
+-|++.+.|.+..+.+-. + ..+.+. -+..-.+|++|.|+|.++..+++. +| .+++.+++. |+.
T Consensus 50 TApels~lFGella~~~~---~-~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L 121 (370)
T COG1565 50 TAPELSQLFGELLAEQFL---Q-LWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL 121 (370)
T ss_pred echhHHHHHHHHHHHHHH---H-HHHHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence 358888888887654321 1 122222 233467999999999999888764 45 467888887 443
No 309
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=81.49 E-value=0.2 Score=34.25 Aligned_cols=54 Identities=4% Similarity=0.001 Sum_probs=41.8
Q ss_pred HHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 27 MHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 27 ~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
.++..-..+. |.+.| ..+ .+.|+.+||+.++. .+..+.+=|+.|...|+++...
T Consensus 5 ~aL~~p~R~~-Il~~L-~~~-~~~t~~ela~~l~~-------~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 5 KALSDPTRLR-ILRLL-ASN-GPMTVSELAEELGI-------SQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHTSHHHHH-HHHHH-HHC-STBEHHHHHHHHTS--------HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhCCHHHHH-HHHHH-hcC-CCCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCeEEec
Confidence 3445556677 88888 332 37999999999999 6778889999999999997654
No 310
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=80.66 E-value=11 Score=35.29 Aligned_cols=89 Identities=18% Similarity=0.076 Sum_probs=58.6
Q ss_pred cccccceEEec-CCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---CceEEec---cCCcCCCC-CCEEEeccccccC
Q 044482 177 FKELKKLVDVA-SCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---CVEHVEG---DMFVNVPS-GQAIFTKSVLLNW 247 (345)
Q Consensus 177 ~~~~~~vlDiG-gG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---ri~~~~g---d~~~~~p~-~D~i~~~~vlh~~ 247 (345)
....++|+=+| ||.|+++.+++++.- .+++.+|. ++-.+.|+ .-.++.. |..+..++ .|+++-.-.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~---- 238 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG---- 238 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC----
Confidence 33456766666 378889999999875 99999999 66666666 2333443 22223332 377665433
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
..-+....+.|++ ||+++++ -..
T Consensus 239 -----~~~~~~~l~~l~~---~G~~v~v-G~~ 261 (339)
T COG1064 239 -----PATLEPSLKALRR---GGTLVLV-GLP 261 (339)
T ss_pred -----hhhHHHHHHHHhc---CCEEEEE-CCC
Confidence 1236667789999 9999999 554
No 311
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=80.51 E-value=0.52 Score=35.03 Aligned_cols=62 Identities=15% Similarity=-0.033 Sum_probs=43.3
Q ss_pred hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCC----------CCccCcee-eEEeE----eeecC
Q 044482 32 AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASS----------SPVSRNIS-TIDVV----MYNLF 96 (345)
Q Consensus 32 a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~----------~L~~~gl~-~~~~~----~y~~t 96 (345)
-++.+ |+..|....+.+.++.|||+.++. ++..+.-.|+ .|+.+|++ .+... .|++|
T Consensus 9 ~~R~~-vl~~L~~~yp~~~~~~eIar~v~~-------~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g~k~Y~lT 80 (90)
T PF07381_consen 9 KVRKK-VLEYLCSIYPEPAYPSEIARSVGS-------DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGGFKYYRLT 80 (90)
T ss_pred HHHHH-HHHHHHHcCCCcCCHHHHHHHHCC-------CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCCeeEEEeC
Confidence 34455 666663333567899999999999 5666655544 58999999 44332 89999
Q ss_pred CCccc
Q 044482 97 PGAKE 101 (345)
Q Consensus 97 ~~s~~ 101 (345)
+.+..
T Consensus 81 ~~G~~ 85 (90)
T PF07381_consen 81 EKGKR 85 (90)
T ss_pred hhhhh
Confidence 87764
No 312
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=80.36 E-value=5.6 Score=36.34 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=64.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC---------CceEEeccCCcC---CC-C-CCEEEe
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP---------CVEHVEGDMFVN---VP-S-GQAIFT 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~---~p-~-~D~i~~ 240 (345)
-....+|||+.++.|.-+..+++..+ ...++..|. +.-+...+ ++.....|.... .+ . .|.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 34557899999999999999999887 568899998 43333222 566666676552 11 2 277765
Q ss_pred c------cccccCC-------hhH-------HHHHHHHHHhhC----CCCCCCcEEEEE
Q 044482 241 K------SVLLNWS-------DEQ-------CLKILKNCYDAL----PKSRKHGRTQLR 275 (345)
Q Consensus 241 ~------~vlh~~~-------d~~-------~~~iL~~~~~aL----~p~~~gG~lli~ 275 (345)
- .++..-+ .++ -.++|+++.+.+ +| ||+++-.
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYs 218 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYS 218 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEE
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEE
Confidence 2 2222211 111 147999999999 99 9987766
No 313
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=78.96 E-value=0.18 Score=36.35 Aligned_cols=46 Identities=13% Similarity=0.055 Sum_probs=38.0
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~ 101 (345)
+.+..+|+..+++ +...+.+.|+.|...|+++..+..|.+|+-+..
T Consensus 19 ~~~~t~i~~~~~L-------~~~~~~~yL~~L~~~gLI~~~~~~Y~lTekG~~ 64 (77)
T PF14947_consen 19 GAKKTEIMYKANL-------NYSTLKKYLKELEEKGLIKKKDGKYRLTEKGKE 64 (77)
T ss_dssp -B-HHHHHTTST---------HHHHHHHHHHHHHTTSEEEETTEEEE-HHHHH
T ss_pred CCCHHHHHHHhCc-------CHHHHHHHHHHHHHCcCeeCCCCEEEECccHHH
Confidence 5789999999999 789999999999999999887779999999876
No 314
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=78.62 E-value=0.28 Score=38.40 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=46.1
Q ss_pred hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 32 AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 32 a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
..++. +...| ...+ +.|..+||+.+++ .+..+.++++-|...|++++... .+.+|+.+..
T Consensus 28 ~~q~~-iL~~l-~~~~-~~t~~ela~~~~~-------~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~ 94 (118)
T TIGR02337 28 EQQWR-ILRIL-AEQG-SMEFTQLANQACI-------LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQA 94 (118)
T ss_pred HHHHH-HHHHH-HHcC-CcCHHHHHHHhCC-------CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHH
Confidence 33455 66666 3323 6899999999999 56789999999999999987431 7888888876
No 315
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=78.46 E-value=0.56 Score=37.43 Aligned_cols=44 Identities=11% Similarity=-0.050 Sum_probs=36.5
Q ss_pred CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCC
Q 044482 47 GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFP 97 (345)
Q Consensus 47 g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~ 97 (345)
+++.|..+||+++++ .+..+.++|+.|...|++.... +.|.+..
T Consensus 23 ~~~~s~~eia~~l~i-------s~~~v~~~l~~L~~~Gli~~~~g~~ggy~l~~ 69 (130)
T TIGR02944 23 SQPYSAAEIAEQTGL-------NAPTVSKILKQLSLAGIVTSKRGVEGGYTLAR 69 (130)
T ss_pred CCCccHHHHHHHHCc-------CHHHHHHHHHHHHHCCcEEecCCCCCChhhcC
Confidence 347899999999999 6899999999999999997642 3666644
No 316
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=77.95 E-value=0.29 Score=36.54 Aligned_cols=58 Identities=10% Similarity=0.138 Sum_probs=43.0
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. ++..| ...+ +.+..+||+.++. .+..+.+.++-|...|+++.... .|.+|+.+..
T Consensus 12 ~~~-il~~l-~~~~-~~~~~~la~~~~~-------s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~ 76 (101)
T smart00347 12 QFL-VLRIL-YEEG-PLSVSELAKRLGV-------SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRE 76 (101)
T ss_pred HHH-HHHHH-HHcC-CcCHHHHHHHHCC-------CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHH
Confidence 444 66666 3323 5899999999999 57889999999999999986532 5666666654
No 317
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=77.58 E-value=0.63 Score=36.53 Aligned_cols=62 Identities=11% Similarity=0.003 Sum_probs=48.4
Q ss_pred HHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-E---eeecCC
Q 044482 26 SMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-V---MYNLFP 97 (345)
Q Consensus 26 ~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-~---~y~~t~ 97 (345)
..+|.--.++. |+..| ..+| +.++.|||+.+++ .+..+.+=|+.|...|+++... + .|++++
T Consensus 10 fkaLadptRl~-IL~~L-~~~~-~~~v~ela~~l~l-------sqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~ 75 (117)
T PRK10141 10 FKILSDETRLG-IVLLL-RESG-ELCVCDLCTALDQ-------SQPKISRHLALLRESGLLLDRKQGKWVHYRLSP 75 (117)
T ss_pred HHHhCCHHHHH-HHHHH-HHcC-CcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCceEEEEEcCEEEEEECc
Confidence 34566667888 99988 5433 5899999999999 5778889999999999996543 3 677765
No 318
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=77.54 E-value=0.49 Score=38.45 Aligned_cols=46 Identities=15% Similarity=0.060 Sum_probs=39.8
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE-eEeeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID-VVMYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~-~~~y~~t~~s~~ 101 (345)
+.+..+||+.+++ .+..+.+.++.|...|++.+. ...|.+|+.+..
T Consensus 22 ~~~~~ela~~l~v-------s~~svs~~l~~L~~~Gli~~~~~~~i~LT~~G~~ 68 (142)
T PRK03902 22 YARVSDIAEALSV-------HPSSVTKMVQKLDKDEYLIYEKYRGLVLTPKGKK 68 (142)
T ss_pred CcCHHHHHHHhCC-------ChhHHHHHHHHHHHCCCEEEecCceEEECHHHHH
Confidence 5799999999999 577888999999999999864 458999998865
No 319
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=77.23 E-value=0.16 Score=32.77 Aligned_cols=43 Identities=0% Similarity=-0.038 Sum_probs=32.0
Q ss_pred cccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceee
Q 044482 35 FEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNIST 87 (345)
Q Consensus 35 l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~ 87 (345)
.. |...|..+ + +.|..+||+++++ ....+.+.++-|...|+++
T Consensus 6 ~~-Il~~l~~~-~-~~t~~ela~~~~i-------s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 6 RK-ILNYLREN-P-RITQKELAEKLGI-------SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HH-HHHHHHHC-T-TS-HHHHHHHHTS--------HHHHHHHHHHHHHTTSEE
T ss_pred HH-HHHHHHHc-C-CCCHHHHHHHhCC-------CHHHHHHHHHHHHHCcCcC
Confidence 44 66777343 3 5899999999999 5678888888888888864
No 320
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=77.22 E-value=14 Score=35.19 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=59.9
Q ss_pred cccccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---CceEE---ecc-CCc---CC-CC-C-CEEEec
Q 044482 177 FKELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP---CVEHV---EGD-MFV---NV-PS-G-QAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---ri~~~---~gd-~~~---~~-p~-~-D~i~~~ 241 (345)
.....+||.+|+|. |..+..++++..-.+++++|. ++..+.++ ...++ ..+ +.+ .. +. + |+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45567899999988 999999999986445888876 66666554 12222 111 111 11 11 3 766542
Q ss_pred ---------------cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 242 ---------------SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 242 ---------------~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
++|+-..+. ...++++.+.|+| +|++++. ..
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~---~G~iv~~-g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK---GGTVSII-GV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhcc---CCEEEEE-cC
Confidence 112222333 3568888999999 9999998 54
No 321
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=76.50 E-value=15 Score=36.28 Aligned_cols=119 Identities=16% Similarity=0.214 Sum_probs=75.3
Q ss_pred hhhhhccCchhHHHHHHHHHHhhHHHHHHHHHhccCccc--ccceEEecCCccHHHHHHHHH----CCCCeEEEeeh-hh
Q 044482 141 DCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKE--LKKLVDVASCLGANMSLIVNT----YPQITGINFDL-PY 213 (345)
Q Consensus 141 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~--~~~vlDiGgG~G~~~~~l~~~----~p~~~~~~~Dl-p~ 213 (345)
.|+.+++||---..|++|.- ..+.+..++-+. ...|.=+|+|.|-+..+.+++ .-.++.+.++- |.
T Consensus 334 TYetFEkD~VKY~~Yq~Ai~-------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPN 406 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAIL-------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPN 406 (649)
T ss_pred hhhhhhccchHHHHHHHHHH-------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcc
Confidence 35566777766566665542 233333332222 456788999999988776654 23456677775 54
Q ss_pred Hh---hhCC------CceEEeccCCc-CCC-C-CCEEEeccccccCChhH-HHHHHHHHHhhCCCCCCCc
Q 044482 214 VI---KNAP------CVEHVEGDMFV-NVP-S-GQAIFTKSVLLNWSDEQ-CLKILKNCYDALPKSRKHG 270 (345)
Q Consensus 214 ~i---~~a~------ri~~~~gd~~~-~~p-~-~D~i~~~~vlh~~~d~~-~~~iL~~~~~aL~p~~~gG 270 (345)
.+ ...+ |++.+..||.+ .-| . .|++ .+-.|.-|.|.+ ..+.|--+-+.||| +|
T Consensus 407 AivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~-VSELLGSFGDNELSPECLDG~q~fLkp---dg 472 (649)
T KOG0822|consen 407 AIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADII-VSELLGSFGDNELSPECLDGAQKFLKP---DG 472 (649)
T ss_pred hhhhhhhhchhhhcCeeEEEeccccccCCchhhccch-HHHhhccccCccCCHHHHHHHHhhcCC---Cc
Confidence 32 2222 89999999998 444 2 3654 466677776654 34568888889999 75
No 322
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=76.36 E-value=3.8 Score=37.67 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=37.5
Q ss_pred ccceEEecCCccHH-HHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEec----cCCcCCC---CC-CEE
Q 044482 180 LKKLVDVASCLGAN-MSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEG----DMFVNVP---SG-QAI 238 (345)
Q Consensus 180 ~~~vlDiGgG~G~~-~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~g----d~~~~~p---~~-D~i 238 (345)
..++||||+|.... ...-++.| +.++++-|+ +..++.|+ +|+++.. +++..+. +. |+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 46899999998754 34444444 899999998 66666655 6777643 4555332 22 889
Q ss_pred EeccccccCChh
Q 044482 239 FTKSVLLNWSDE 250 (345)
Q Consensus 239 ~~~~vlh~~~d~ 250 (345)
+|+--+|.-.++
T Consensus 182 mCNPPFy~s~~e 193 (299)
T PF05971_consen 182 MCNPPFYSSQEE 193 (299)
T ss_dssp EE-----SS---
T ss_pred ecCCccccChhh
Confidence 998888775544
No 323
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=76.15 E-value=2.9 Score=40.19 Aligned_cols=84 Identities=13% Similarity=0.077 Sum_probs=53.2
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCC-C--CCEEEeccccc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVP-S--GQAIFTKSVLL 245 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p-~--~D~i~~~~vlh 245 (345)
..|||||.|+|.++...+++--+ .++.++. .+|.+.|+ +|+++.---.+ .+. . +|++.-.-+.-
T Consensus 68 v~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdt 146 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDT 146 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhh
Confidence 56999999999999998888744 5888887 77777665 56665543222 222 2 26554444443
Q ss_pred cCChhHHHHHHHHHHhhCCC
Q 044482 246 NWSDEQCLKILKNCYDALPK 265 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p 265 (345)
.+--+-+..-++++++.|-.
T Consensus 147 EligeGalps~qhAh~~L~~ 166 (636)
T KOG1501|consen 147 ELIGEGALPSLQHAHDMLLV 166 (636)
T ss_pred hhhccccchhHHHHHHHhcc
Confidence 44444455566777666643
No 324
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=75.95 E-value=1.1 Score=36.32 Aligned_cols=45 Identities=11% Similarity=-0.093 Sum_probs=37.6
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE---eeecCCCc
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV---MYNLFPGA 99 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~---~y~~t~~s 99 (345)
...+..+||+++++ .+..++++|+.|...|+++...+ .|.+....
T Consensus 24 ~~~s~~~ia~~~~i-------s~~~vrk~l~~L~~~Glv~s~~G~~GG~~l~~~~ 71 (141)
T PRK11014 24 RMTSISEVTEVYGV-------SRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPA 71 (141)
T ss_pred CccCHHHHHHHHCc-------CHHHHHHHHHHHHhCCEEEEecCCCCCeeecCCH
Confidence 46799999999999 68899999999999999976543 68776533
No 325
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=75.88 E-value=0.67 Score=36.65 Aligned_cols=56 Identities=9% Similarity=0.044 Sum_probs=44.9
Q ss_pred HHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 25 QSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 25 ~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
.-+.+.+--.+. |.++| ++. .|.|+.|+|+..|- +...+.|-|+.|...|++....
T Consensus 57 ~la~vLsp~nle-Ll~~I-a~~-~P~Si~ElAe~vgR-------dv~nvhr~Ls~l~~~GlI~fe~ 112 (144)
T COG4190 57 DLARVLSPRNLE-LLELI-AQE-EPASINELAELVGR-------DVKNVHRTLSTLADLGLIFFEE 112 (144)
T ss_pred HHHHHhChhHHH-HHHHH-Hhc-CcccHHHHHHHhCc-------chHHHHHHHHHHHhcCeEEEec
Confidence 334444555677 88888 543 48999999999999 8999999999999999997654
No 326
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=75.86 E-value=15 Score=29.97 Aligned_cols=119 Identities=13% Similarity=0.083 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-----hhHhhhCCCceEEecc
Q 044482 153 NLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-----PYVIKNAPCVEHVEGD 227 (345)
Q Consensus 153 ~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-----p~~i~~a~ri~~~~gd 227 (345)
+.|.+-|.+..... ..++.... .-..-|+|+|=|.|.+=-.|.+.+|+-+++++|. |+.+.. .=.++.||
T Consensus 5 Dsfi~RmtaQR~~L-~~a~~~v~--~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~--~~~~ilGd 79 (160)
T PF12692_consen 5 DSFIRRMTAQRDCL-NWAAAQVA--GLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPP--EEDLILGD 79 (160)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHTT--T--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG-----GGGEEES-
T ss_pred HHHHHHHHHHHHHH-HHHHHHhc--CCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCc--hHheeecc
Confidence 45666666544332 23333333 1236899999999999999999999999999996 222222 34577888
Q ss_pred CCcCCCC----C-CEEEeccccccCChh----HHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 228 MFVNVPS----G-QAIFTKSVLLNWSDE----QCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 228 ~~~~~p~----~-D~i~~~~vlh~~~d~----~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
+.+.+|. + .+.+...=+---..+ .+..+=.-+...|.| ||.++.- ..+.
T Consensus 80 i~~tl~~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~---gGi~vS~-~pl~ 137 (160)
T PF12692_consen 80 IRETLPALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAP---GGIMVSG-QPLY 137 (160)
T ss_dssp HHHHHHHHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEE---EEEEEES-S---
T ss_pred HHHHhHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcC---CcEEEeC-Cccc
Confidence 8774442 2 444333333211222 223334446778889 7755444 5444
No 327
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=75.73 E-value=0.94 Score=37.36 Aligned_cols=47 Identities=11% Similarity=-0.080 Sum_probs=39.4
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE---eeecCCCccc
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV---MYNLFPGAKE 101 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~---~y~~t~~s~~ 101 (345)
.+.|..+||++.++ .+..|+++|..|...|+++-..+ .|.++.-.+.
T Consensus 23 ~~~s~~eIA~~~~i-------s~~~L~kIl~~L~~aGlv~S~rG~~GGy~La~~p~e 72 (153)
T PRK11920 23 KLSRIPEIARAYGV-------SELFLFKILQPLVEAGLVETVRGRNGGVRLGRPAAD 72 (153)
T ss_pred CcCcHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEeecCCCCCeeecCCHHH
Confidence 36799999999999 78999999999999999966543 8888765544
No 328
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=74.77 E-value=7.2 Score=35.17 Aligned_cols=35 Identities=9% Similarity=0.045 Sum_probs=30.9
Q ss_pred cccccceEEecCCccHHHHHHHHHC-----CCCeEEEeeh
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-----PQITGINFDL 211 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-----p~~~~~~~Dl 211 (345)
+.+...+++.|||.|.++..+++.. +...++.+|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 5566789999999999999999998 5678999998
No 329
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=74.40 E-value=8.3 Score=32.53 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=29.9
Q ss_pred CEEEeccccccCCh----------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSD----------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|+++++||+++. +...++++++.++|+| +..++..
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~---~allIW~ 98 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPI---ECLIVWN 98 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCC---ccEEEEe
Confidence 99999999999876 3556788888899998 6655555
No 330
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=73.03 E-value=0.19 Score=36.58 Aligned_cols=58 Identities=10% Similarity=0.078 Sum_probs=41.6
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE--------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV--------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~--------~y~~t~~s~~ 101 (345)
++. |...| ... ..++..+|.+.+++ ....+.+-|+.|...|+++.... .|++|+.++.
T Consensus 2 Rl~-Il~~L-~~~-~~~~f~~L~~~l~l-------t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~ 67 (80)
T PF13601_consen 2 RLA-ILALL-YAN-EEATFSELKEELGL-------TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGRE 67 (80)
T ss_dssp HHH-HHHHH-HHH-SEEEHHHHHHHTT---------HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHH
T ss_pred HHH-HHHHH-hhc-CCCCHHHHHHHhCc-------CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHH
Confidence 344 56666 332 25899999999999 67899999999999999987643 4666666654
No 331
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=72.88 E-value=40 Score=30.60 Aligned_cols=118 Identities=8% Similarity=-0.034 Sum_probs=71.1
Q ss_pred ceEEecCCccHHHHHHHHHCCCCe-EEEeeh-hhHhhhCC---CceEEeccCCc-CC---C-CCCEEEeccccccCChh-
Q 044482 182 KLVDVASCLGANMSLIVNTYPQIT-GINFDL-PYVIKNAP---CVEHVEGDMFV-NV---P-SGQAIFTKSVLLNWSDE- 250 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~~p~~~-~~~~Dl-p~~i~~a~---ri~~~~gd~~~-~~---p-~~D~i~~~~vlh~~~d~- 250 (345)
+++|+-||.|.+...+.+.. .+ +..+|. +..++..+ .-.++.+|+.+ .. + +-|+++..--+..++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 68999999999999998764 33 566787 55444333 22256677766 21 2 22999887766544321
Q ss_pred -------HHHHHHH---HHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHH
Q 044482 251 -------QCLKILK---NCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAM 320 (345)
Q Consensus 251 -------~~~~iL~---~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~ 320 (345)
....++. ++.+.++| +++++ |.+..-.. ..+.....++.+.|+
T Consensus 80 ~~~~~~d~r~~L~~~~~~~i~~~~P-----~~~v~-ENV~g~~~---------------------~~~~~~~~~i~~~l~ 132 (275)
T cd00315 80 KRKGFEDTRGTLFFEIIRILKEKKP-----KYFLL-ENVKGLLT---------------------HDNGNTLKVILNTLE 132 (275)
T ss_pred hcCCCCCchHHHHHHHHHHHHhcCC-----CEEEE-EcCcchhc---------------------cCchHHHHHHHHHHH
Confidence 1122232 34445577 68888 77643211 011124667888889
Q ss_pred HCCCCceE
Q 044482 321 AAGFGTIK 328 (345)
Q Consensus 321 ~aGf~~~~ 328 (345)
+.|+.+..
T Consensus 133 ~~GY~~~~ 140 (275)
T cd00315 133 ELGYNVYW 140 (275)
T ss_pred hCCcEEEE
Confidence 99987643
No 332
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=72.60 E-value=0.95 Score=31.15 Aligned_cols=36 Identities=3% Similarity=-0.235 Sum_probs=30.5
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
.|.+..|||+++++ .....++.|..|...|.+....
T Consensus 14 ~p~~T~eiA~~~gl-------s~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 14 GPLKTREIADALGL-------SIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp S-EEHHHHHHHHTS--------HHHHHHHHHHHHHCTSEEEES
T ss_pred CCCCHHHHHHHhCC-------CHHHHHHHHHHHHHCCCEEEec
Confidence 37899999999999 5778999999999999998754
No 333
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=72.54 E-value=1.5 Score=32.92 Aligned_cols=42 Identities=14% Similarity=0.004 Sum_probs=36.4
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe--EeeecC
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV--VMYNLF 96 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~--~~y~~t 96 (345)
.++|..|||+.+|+ .+..+.|.|..|...|++.... +.|+.+
T Consensus 46 ~~is~~eLa~~~g~-------sr~tVsr~L~~Le~~GlI~r~~~~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL-------SRTHVSDAIKSLARRRIIFRQGMMGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeeeecCCceeecC
Confidence 36899999999999 6788999999999999998877 477665
No 334
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=72.00 E-value=0.32 Score=31.32 Aligned_cols=41 Identities=7% Similarity=0.093 Sum_probs=32.6
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeE
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTI 88 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~ 88 (345)
|...| .+| +.++.|||+.++. ....+.+=|+.|...|++++
T Consensus 7 Il~~L-~~~--~~~~~el~~~l~~-------s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 7 ILKLL-SEG--PLTVSELAEELGL-------SQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHH-TTS--SEEHHHHHHHHTS--------HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHH-HhC--CCchhhHHHhccc-------cchHHHHHHHHHHHCcCeeC
Confidence 55566 542 6899999999999 67788888899999998863
No 335
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=71.31 E-value=9.4 Score=34.29 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=43.4
Q ss_pred HHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEE-eccCCcCCCCCCEEEeccccccCChhHHHHHHHHHHhhCCC
Q 044482 193 NMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHV-EGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPK 265 (345)
Q Consensus 193 ~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~-~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p 265 (345)
++.+|.++.|+.+++++|. +..++.+. ++... ..+ .+.+.+.|+|++. .|.+....+|+++...+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvla-----vP~~~~~~~l~~~~~~~~~ 71 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLA-----VPVSAIEDVLEEIAPYLKP 71 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE------S-HHHHHHHHHHHHCGS-T
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEc-----CCHHHHHHHHHHhhhhcCC
Confidence 4678889999999999998 77777764 32221 121 2233345988876 4556677888888888888
No 336
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=71.28 E-value=1.1 Score=30.09 Aligned_cols=35 Identities=6% Similarity=0.065 Sum_probs=31.1
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
+.+..+||+.+++ ++..+-++++-|...|++++..
T Consensus 17 ~~~~~~la~~~~~-------~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 17 GITQSELAEKLGI-------SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp SEEHHHHHHHHTS--------HHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHCC-------ChhHHHHHHHHHHHCCCEEecc
Confidence 5899999999999 7889999999999999998754
No 337
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=70.99 E-value=35 Score=29.90 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=59.4
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCC--eEEEeeh-hhHhhhCC-----------------------------------
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQI--TGINFDL-PYVIKNAP----------------------------------- 219 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~--~~~~~Dl-p~~i~~a~----------------------------------- 219 (345)
+.+-++-|=.||+|+++.-+.-.+++. .+++-|+ +++++.|+
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 456789999999999988887777653 5788888 77776554
Q ss_pred ----------------CceEEeccCCcCCC-------CC-CEEEeccc---cccCCh----hHHHHHHHHHHhhCCCCCC
Q 044482 220 ----------------CVEHVEGDMFVNVP-------SG-QAIFTKSV---LLNWSD----EQCLKILKNCYDALPKSRK 268 (345)
Q Consensus 220 ----------------ri~~~~gd~~~~~p-------~~-D~i~~~~v---lh~~~d----~~~~~iL~~~~~aL~p~~~ 268 (345)
.......|+|++.+ .+ |+|+.--- +-+|.. +-...+|..++.+|++
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~--- 206 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE--- 206 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T---
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC---
Confidence 23466778887332 22 88776422 235654 3457899999999966
Q ss_pred CcEEEEE
Q 044482 269 HGRTQLR 275 (345)
Q Consensus 269 gG~lli~ 275 (345)
++.+.|.
T Consensus 207 ~sVV~v~ 213 (246)
T PF11599_consen 207 RSVVAVS 213 (246)
T ss_dssp T-EEEEE
T ss_pred CcEEEEe
Confidence 6666665
No 338
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=70.67 E-value=1.7 Score=29.05 Aligned_cols=35 Identities=0% Similarity=-0.067 Sum_probs=30.7
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
+.|..+|++.++. .+..+.+.++.|...|++....
T Consensus 10 ~~~~~~i~~~l~i-------s~~~v~~~l~~L~~~g~i~~~~ 44 (66)
T smart00418 10 ELCVCELAEILGL-------SQSTVSHHLKKLREAGLVESRR 44 (66)
T ss_pred CccHHHHHHHHCC-------CHHHHHHHHHHHHHCCCeeeee
Confidence 6899999999999 5778999999999999997654
No 339
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=70.46 E-value=5.4 Score=38.68 Aligned_cols=96 Identities=14% Similarity=0.009 Sum_probs=60.4
Q ss_pred ccceEEecCCccHHHHHHHHHCCCC--eEEEeeh-hhHhhhCC---------CceEEec-cCCc---CCC--CC-CEEEe
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQI--TGINFDL-PYVIKNAP---------CVEHVEG-DMFV---NVP--SG-QAIFT 240 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~--~~~~~Dl-p~~i~~a~---------ri~~~~g-d~~~---~~p--~~-D~i~~ 240 (345)
+..+.|+|.|.|.-.-++....++. .+..+|. -.|..... +--++.. -|+. |.+ .+ |++++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 4688999988887776666666663 3678887 34444332 1112222 3333 333 34 99999
Q ss_pred ccccccCChhH-HHHHH-HHHHhhCCCCCCCcEEEEEeccC
Q 044482 241 KSVLLNWSDEQ-CLKIL-KNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 241 ~~vlh~~~d~~-~~~iL-~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
.++||++.... ...+. ..+++..++ |+.++|+ +.-
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~---g~~lViI-e~g 317 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRS---GYFLVII-EKG 317 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCC---CceEEEE-ecC
Confidence 99999987654 22233 345667778 9999998 653
No 340
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=70.36 E-value=1.1 Score=33.33 Aligned_cols=43 Identities=9% Similarity=0.044 Sum_probs=37.4
Q ss_pred HHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-eeecCCCccc
Q 044482 52 MSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-MYNLFPGAKE 101 (345)
Q Consensus 52 ~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-~y~~t~~s~~ 101 (345)
..+||+++++ .+..+.+.++.|...|++....+ .|.+|+.+..
T Consensus 2 ~~ela~~l~i-------s~stvs~~l~~L~~~glI~r~~~~~~~lT~~g~~ 45 (96)
T smart00529 2 TSEIAERLNV-------SPPTVTQMLKKLEKDGLVEYEPYRGITLTEKGRR 45 (96)
T ss_pred HHHHHHHhCC-------ChHHHHHHHHHHHHCCCEEEcCCCceEechhHHH
Confidence 4689999999 68899999999999999988764 8888888865
No 341
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=70.12 E-value=9.5 Score=33.76 Aligned_cols=74 Identities=14% Similarity=0.268 Sum_probs=43.6
Q ss_pred HHHHHhccCcccc--cceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhh--------CC-----------CceEEec
Q 044482 168 KKILEIYKGFKEL--KKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKN--------AP-----------CVEHVEG 226 (345)
Q Consensus 168 ~~i~~~~~~~~~~--~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~--------a~-----------ri~~~~g 226 (345)
+.+++... .... .+|||.=+|-|.-+.-++.. +.++++++...++.. +. ||+++.+
T Consensus 63 ~~l~kA~G-lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 63 DPLAKAVG-LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp SHHHHHTT--BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred cHHHHHhC-CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 34566654 4443 48999999999999888764 568999998444321 11 8999999
Q ss_pred cCCcCC--CC-C-CEEEecccc
Q 044482 227 DMFVNV--PS-G-QAIFTKSVL 244 (345)
Q Consensus 227 d~~~~~--p~-~-D~i~~~~vl 244 (345)
|..+-+ +. . |+|++-=.+
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S-
T ss_pred CHHHHHhhcCCCCCEEEECCCC
Confidence 998833 33 2 999885544
No 342
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=69.69 E-value=1.4 Score=35.59 Aligned_cols=46 Identities=4% Similarity=-0.045 Sum_probs=39.1
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
+.|..+||+.+++ ++..+.++++-|...|++++..+ ...+|+.++.
T Consensus 46 ~~t~~eLa~~l~~-------~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~ 98 (144)
T PRK03573 46 EQSQIQLAKAIGI-------EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEP 98 (144)
T ss_pred CCCHHHHHHHhCC-------ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHH
Confidence 5799999999999 78889999999999999987532 6777777765
No 343
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=69.48 E-value=1.2 Score=38.53 Aligned_cols=55 Identities=9% Similarity=0.149 Sum_probs=42.5
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-----E----eeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-----V----MYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-----~----~y~~t~~s~~ 101 (345)
|...|... | +.|..+||+++++ .+..+.+.|+.|...|+++... + .|.+|+.+..
T Consensus 6 IL~~L~~~-~-~~t~~eLA~~lgi-------s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~ 69 (203)
T TIGR02702 6 ILSYLLKQ-G-QATAAALAEALAI-------SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGRE 69 (203)
T ss_pred HHHHHHHc-C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhh
Confidence 44455223 3 5899999999999 6889999999999999997652 1 5788877765
No 344
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=69.28 E-value=2.8 Score=27.81 Aligned_cols=31 Identities=3% Similarity=-0.033 Sum_probs=26.1
Q ss_pred HHHHhhhhccccccceeeccCCCchhHHHHHHHcCCC
Q 044482 26 SMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQI 62 (345)
Q Consensus 26 ~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~ 62 (345)
-.+|.+|.++| .||.= . ..|+++||+.+|++
T Consensus 6 ~e~L~~A~~~G-Yfd~P-R----~~tl~elA~~lgis 36 (53)
T PF04967_consen 6 REILKAAYELG-YFDVP-R----RITLEELAEELGIS 36 (53)
T ss_pred HHHHHHHHHcC-CCCCC-C----cCCHHHHHHHhCCC
Confidence 45889999999 88765 3 58999999999994
No 345
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=68.81 E-value=1.5 Score=35.66 Aligned_cols=55 Identities=7% Similarity=-0.091 Sum_probs=43.3
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
+.-.|... +++|..+||+.++. ++..+-++++.|...|++.+..+ ...+|+.+..
T Consensus 45 vL~~l~~~--~~~t~~eLa~~l~i-------~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~ 106 (144)
T PRK11512 45 VLCSIRCA--ACITPVELKKVLSV-------DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAA 106 (144)
T ss_pred HHHHHHHc--CCCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHH
Confidence 45555222 36899999999999 78899999999999999987532 6677877776
No 346
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=67.07 E-value=2.7 Score=38.38 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=64.7
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC--CCEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS--GQAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~--~D~i~~~~vlh 245 (345)
....|+|+=.|.|+++..+.-+.....+..+|+ |+.++..+ |+..+.||-..+-|+ +|-|.+.-+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGLl-- 271 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGLL-- 271 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeeccc--
Confidence 347899999999999996655555567899999 87776543 777888887665554 366654422
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCC
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPES 283 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~ 283 (345)
|.. .+-.-.+-++|+|++ ||.+-|+ +.+-.++
T Consensus 272 --PSs--e~~W~~A~k~Lk~eg-gsilHIH-enV~~s~ 303 (351)
T KOG1227|consen 272 --PSS--EQGWPTAIKALKPEG-GSILHIH-ENVKDSD 303 (351)
T ss_pred --ccc--ccchHHHHHHhhhcC-CcEEEEe-ccccccc
Confidence 221 122334456888852 3367777 8887665
No 347
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=66.92 E-value=9.6 Score=34.06 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=24.7
Q ss_pred ccceEEecCCccHHHHHHHHHCC--------CCeEEEeehh
Q 044482 180 LKKLVDVASCLGANMSLIVNTYP--------QITGINFDLP 212 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p--------~~~~~~~Dlp 212 (345)
.-+|+++|+|+|.++..+++... .++.+.++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~S 59 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEIS 59 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TT
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCC
Confidence 36899999999999999987643 3578999873
No 348
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=66.42 E-value=1.1 Score=31.21 Aligned_cols=37 Identities=5% Similarity=-0.036 Sum_probs=29.5
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
-+-|..|||+.+|+. .+..+..-|++|...|+++...
T Consensus 24 ~~Pt~rEIa~~~g~~------S~~tv~~~L~~Le~kG~I~r~~ 60 (65)
T PF01726_consen 24 YPPTVREIAEALGLK------STSTVQRHLKALERKGYIRRDP 60 (65)
T ss_dssp S---HHHHHHHHTSS------SHHHHHHHHHHHHHTTSEEEGC
T ss_pred CCCCHHHHHHHhCCC------ChHHHHHHHHHHHHCcCccCCC
Confidence 356999999999992 3788999999999999998754
No 349
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=66.22 E-value=1 Score=32.27 Aligned_cols=50 Identities=14% Similarity=0.037 Sum_probs=40.2
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV 91 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~ 91 (345)
+.. +.+.|...+..|.+..+|++.++. |++.+-..++.|...|++.+..-
T Consensus 4 ~~~-~Le~I~rsR~~Gi~q~~L~~~~~~-------D~r~i~~~~k~L~~~gLI~k~~~ 53 (75)
T PF04182_consen 4 QYC-LLERIARSRYNGITQSDLSKLLGI-------DPRSIFYRLKKLEKKGLIVKQSV 53 (75)
T ss_pred HHH-HHHHHHhcCCCCEehhHHHHHhCC-------CchHHHHHHHHHHHCCCEEEEEe
Confidence 344 555563444568999999999999 89999999999999999987653
No 350
>PHA00738 putative HTH transcription regulator
Probab=65.31 E-value=1.8 Score=33.19 Aligned_cols=59 Identities=14% Similarity=0.001 Sum_probs=45.6
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-E---eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-V---MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-~---~y~~t~~s~~ 101 (345)
.++. |++.| ..++ +.++.+|++.+++ ....+.+=|+.|...|+++... + .|++++....
T Consensus 13 tRr~-IL~lL-~~~e-~~~V~eLae~l~l-------SQptVS~HLKvLreAGLV~srK~Gr~vyY~Ln~~~~~ 75 (108)
T PHA00738 13 LRRK-ILELI-AENY-ILSASLISHTLLL-------SYTTVLRHLKILNEQGYIELYKEGRTLYAKIRENSKE 75 (108)
T ss_pred HHHH-HHHHH-HHcC-CccHHHHHHhhCC-------CHHHHHHHHHHHHHCCceEEEEECCEEEEEECCCccH
Confidence 3556 78888 5533 5899999999999 4667888899999999996553 3 7888877754
No 351
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=65.24 E-value=1.6 Score=36.79 Aligned_cols=44 Identities=7% Similarity=-0.072 Sum_probs=38.4
Q ss_pred hHHHHHHHc--CCCcccCCCccccccccCCCCccCceeeEEeE-eeecCCCccc
Q 044482 51 NMSLIVNTY--SQIRGINFDLPHVIENASSSPVSRNISTIDVV-MYNLFPGAKE 101 (345)
Q Consensus 51 t~~eLA~~~--~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-~y~~t~~s~~ 101 (345)
+.++||+++ ++ .+.-++..|+.|..+|+++++++ .|..|.-+-.
T Consensus 41 d~~~iak~l~p~i-------s~~ev~~sL~~L~~~gli~k~~~g~y~~t~~~l~ 87 (171)
T PF14394_consen 41 DPEWIAKRLRPKI-------SAEEVRDSLEFLEKLGLIKKDGDGKYVQTDKSLT 87 (171)
T ss_pred CHHHHHHHhcCCC-------CHHHHHHHHHHHHHCCCeEECCCCcEEEecceee
Confidence 899999999 88 57889999999999999999987 8888876543
No 352
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=64.89 E-value=2.2 Score=27.43 Aligned_cols=36 Identities=8% Similarity=-0.057 Sum_probs=31.8
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV 91 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~ 91 (345)
+.+..+|++.+++ .+..+.+.|..|...|++.+...
T Consensus 14 ~~s~~~l~~~l~~-------s~~tv~~~l~~L~~~g~i~~~~~ 49 (53)
T smart00420 14 KVSVEELAELLGV-------SEMTIRRDLNKLEEQGLLTRVHG 49 (53)
T ss_pred CcCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEEeec
Confidence 5899999999999 67889999999999999987654
No 353
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=64.47 E-value=2.9 Score=36.12 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=43.7
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCCCc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFPGA 99 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~~s 99 (345)
++. +...| ...| +.+..+||++++. .+..+.+.+..|...|++++.. ..|.+|+.+
T Consensus 145 ~~~-IL~~l-~~~g-~~s~~eia~~l~i-------s~stv~r~L~~Le~~GlI~r~~~r~~~~~lT~~G 203 (203)
T TIGR01884 145 ELK-VLEVL-KAEG-EKSVKNIAKKLGK-------SLSTISRHLRELEKKGLVEQKGRKGKRYSLTKLG 203 (203)
T ss_pred HHH-HHHHH-HHcC-CcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEEcCCccEEEeCCCC
Confidence 445 66666 3322 5799999999999 5778899999999999998875 378888753
No 354
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=64.20 E-value=1.8 Score=29.46 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=30.8
Q ss_pred CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE
Q 044482 47 GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID 89 (345)
Q Consensus 47 g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~ 89 (345)
+.+++..+||+++++ .+..+...++-|...|+++.+
T Consensus 20 ~~~v~~~~iA~~L~v-------s~~tvt~ml~~L~~~GlV~~~ 55 (60)
T PF01325_consen 20 GGPVRTKDIAERLGV-------SPPTVTEMLKRLAEKGLVEYE 55 (60)
T ss_dssp TSSBBHHHHHHHHTS--------HHHHHHHHHHHHHTTSEEEE
T ss_pred CCCccHHHHHHHHCC-------ChHHHHHHHHHHHHCCCEEec
Confidence 347999999999999 577888999999999999875
No 355
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=64.16 E-value=16 Score=34.74 Aligned_cols=99 Identities=12% Similarity=0.134 Sum_probs=64.3
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCc-CCCCC---CEEEe---
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFV-NVPSG---QAIFT--- 240 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~-~~p~~---D~i~~--- 240 (345)
..+.+|++|+.+.....+++.|+-++--+++. .+-+..+. .+++..||++. +.-.. +.+..
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~ 260 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGF 260 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccc
Confidence 46899999999999999999998887666665 33333222 46666676653 11100 11000
Q ss_pred ----------------------ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCC
Q 044482 241 ----------------------KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESP 284 (345)
Q Consensus 241 ----------------------~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~ 284 (345)
+.+.-||++. ..+++.....++| +|.+++. +.+...+.
T Consensus 261 ~~~~~~~dl~~~~s~~w~~~~~~~~~~~~~~~--~~~f~~~~~~~~~---~~~v~~~-e~~~~~p~ 320 (364)
T KOG1269|consen 261 EHLKLEKDLALKSSFPWNTPLTRDTITHWQDK--SALFRGRVATLKP---GGKVLIL-EYIRGLPE 320 (364)
T ss_pred hhhhhcccccCCCccccccccchhheeecccc--cHHHHhHhhccCc---CceEEeh-hhcCcCCc
Confidence 1223344443 3578888899999 9999999 88866543
No 356
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=63.78 E-value=4.6 Score=30.98 Aligned_cols=80 Identities=21% Similarity=0.127 Sum_probs=47.3
Q ss_pred CCccHHHHHHHHHC--CCCeEEEeeh-hhHhhhCC--CceEEeccCCcC--CC-----CCCEEEeccccccCChhHHHHH
Q 044482 188 SCLGANMSLIVNTY--PQITGINFDL-PYVIKNAP--CVEHVEGDMFVN--VP-----SGQAIFTKSVLLNWSDEQCLKI 255 (345)
Q Consensus 188 gG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~~--~p-----~~D~i~~~~vlh~~~d~~~~~i 255 (345)
||.|.++..+++.. .+.+++++|. ++.++.++ .+.++.||..++ +. +++.+++..- +|+....+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~~~ 79 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENLLI 79 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccC----CHHHHHHH
Confidence 45566777766543 3347999998 67777665 788999999872 21 2265554321 34444444
Q ss_pred HHHHHhhCCCCCCCcEEEEE
Q 044482 256 LKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 256 L~~~~~aL~p~~~gG~lli~ 275 (345)
....+.+.| ..+++..
T Consensus 80 -~~~~r~~~~---~~~ii~~ 95 (116)
T PF02254_consen 80 -ALLARELNP---DIRIIAR 95 (116)
T ss_dssp -HHHHHHHTT---TSEEEEE
T ss_pred -HHHHHHHCC---CCeEEEE
Confidence 444466666 6677666
No 357
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=63.77 E-value=2.1 Score=28.35 Aligned_cols=35 Identities=6% Similarity=-0.031 Sum_probs=30.4
Q ss_pred ch-hHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 49 GV-NMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 49 ~~-t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
.. |..+||+++++ ....+.+.++.|...|++....
T Consensus 19 ~l~s~~~la~~~~v-------s~~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 19 KLPSERELAAQLGV-------SRTTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred cCcCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEEec
Confidence 35 89999999999 5788999999999999997654
No 358
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=63.63 E-value=2.8 Score=28.41 Aligned_cols=38 Identities=3% Similarity=-0.162 Sum_probs=31.1
Q ss_pred hhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-eee
Q 044482 50 VNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-MYN 94 (345)
Q Consensus 50 ~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-~y~ 94 (345)
.|..+||..+++ ....+.+.+..|...|+++...+ .|.
T Consensus 26 ~~~~~la~~~~i-------s~~~v~~~l~~L~~~G~i~~~~~~~~~ 64 (66)
T cd07377 26 PSERELAEELGV-------SRTTVREALRELEAEGLVERRPGRGTF 64 (66)
T ss_pred CCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEecCCCeEE
Confidence 358999999999 57889999999999999976533 443
No 359
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=63.61 E-value=14 Score=33.83 Aligned_cols=76 Identities=24% Similarity=0.329 Sum_probs=46.9
Q ss_pred CceEEeccCCcCCC-----CC--CEEEec-cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhh
Q 044482 220 CVEHVEGDMFVNVP-----SG--QAIFTK-SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINR 291 (345)
Q Consensus 220 ri~~~~gd~~~~~p-----~~--D~i~~~-~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~ 291 (345)
+|.|++.|....++ .+ |+++++ +..|.+.++ +.++|+| ++.|++= ..
T Consensus 201 kVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~---~A~LvvE--ta------------ 255 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAP---DAVLVVE--TA------------ 255 (289)
T ss_pred EEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCC---CCEEEEE--cc------------
Confidence 78899988877555 23 877765 566666665 4567899 7655444 21
Q ss_pred hhhccchh--hhhhcCCCccCCHHHHHHHHHHCCCCceE
Q 044482 292 NILTLDIV--MYDLFPQAKGRTAGEFKALAMAAGFGTIK 328 (345)
Q Consensus 292 ~~~~~d~~--~~~~~~~~~~rt~~e~~~ll~~aGf~~~~ 328 (345)
..+.|+. -...+ .+...+++++|||+-+.
T Consensus 256 -KfmvdLrKEq~~~F-------~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 256 -KFMVDLRKEQLQEF-------VKKVKELAKAAGFKPVT 286 (289)
T ss_pred -hhheeCCHHHHHHH-------HHHHHHHHHHCCCcccc
Confidence 0111111 11122 56789999999998653
No 360
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=63.33 E-value=1.7 Score=35.91 Aligned_cols=46 Identities=9% Similarity=-0.042 Sum_probs=40.9
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-EeeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-VMYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-~~y~~t~~s~~ 101 (345)
++...+||+.+++ .|..+...++-|...|++.... ..+.+|+.+..
T Consensus 24 ~~~~~diA~~L~V-------sp~sVt~ml~rL~~~GlV~~~~y~gi~LT~~G~~ 70 (154)
T COG1321 24 FARTKDIAERLKV-------SPPSVTEMLKRLERLGLVEYEPYGGVTLTEKGRE 70 (154)
T ss_pred cccHHHHHHHhCC-------CcHHHHHHHHHHHHCCCeEEecCCCeEEChhhHH
Confidence 6899999999999 6788889999999999999865 48999998875
No 361
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=63.15 E-value=29 Score=28.72 Aligned_cols=71 Identities=17% Similarity=-0.024 Sum_probs=37.3
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 253 LKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 253 ~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
..+++-+++.|.| ||+|+|- .+.+ ++ + +..+. -|.......+-..|.++||+..+-+..
T Consensus 66 ~~l~~~~~~~l~p---g~~lfVe--Y~~D--~e--------T-----~~~L~-~G~pp~~TrLG~~Ll~~GFtwfKdWYf 124 (170)
T PF06557_consen 66 DELYKLFSRYLEP---GGRLFVE--YVED--RE--------T-----RRQLQ-RGVPPAETRLGFSLLKAGFTWFKDWYF 124 (170)
T ss_dssp HHHHHHHHTT-------SEEEEE---TT---HH--------H-----HHHHH-TT--GGGSHHHHHHHTTT--EEEEEE-
T ss_pred HHHHHHHHHHhhh---cCeEEEE--EecC--HH--------H-----HHHHH-cCCCcccchhHHHHHhCCcEEEeeeec
Confidence 6899999999999 9999887 2211 10 0 11111 344445567888999999999998877
Q ss_pred C-C---ceEEEEEEcC
Q 044482 333 S-Y---CYWVIEFYKP 344 (345)
Q Consensus 333 ~-~---~~~vi~~~k~ 344 (345)
| + +-.=|.|.||
T Consensus 125 PEG~~EGg~KlQa~Kp 140 (170)
T PF06557_consen 125 PEGGMEGGPKLQAEKP 140 (170)
T ss_dssp -TTTSTT-EEEEEE--
T ss_pred cCccccCCceeeeecC
Confidence 5 2 2345666665
No 362
>PRK11050 manganese transport regulator MntR; Provisional
Probab=62.80 E-value=2.4 Score=34.83 Aligned_cols=55 Identities=9% Similarity=0.069 Sum_probs=42.5
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-EeeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-VMYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-~~y~~t~~s~~ 101 (345)
|..++ ..++ +.+..+||+++++ .+..+.+.++.|...|++.... ..+.+|+.+..
T Consensus 42 I~~~l-~~~~-~~t~~eLA~~l~i-------s~stVsr~l~~Le~~GlI~r~~~~~v~LT~~G~~ 97 (152)
T PRK11050 42 IADLI-AEVG-EARQVDIAARLGV-------SQPTVAKMLKRLARDGLVEMRPYRGVFLTPEGEK 97 (152)
T ss_pred HHHHH-HhcC-CCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEEecCCceEECchHHH
Confidence 44455 3223 6899999999999 6889999999999999997754 36777777654
No 363
>PRK10870 transcriptional repressor MprA; Provisional
Probab=62.35 E-value=2.2 Score=36.02 Aligned_cols=57 Identities=7% Similarity=-0.078 Sum_probs=43.3
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
+.-.|...++.+.|..+||+++++ ++..+.+++.-|...|++++..+ ...+|+.+..
T Consensus 60 iL~~L~~~~~~~it~~eLa~~l~l-------~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~ 123 (176)
T PRK10870 60 ALITLESQENHSIQPSELSCALGS-------SRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHE 123 (176)
T ss_pred HHHHHhcCCCCCcCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHH
Confidence 333452222346899999999999 67889999999999999987532 6777887776
No 364
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=62.06 E-value=3.8 Score=28.23 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=38.0
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe----EeeecCC
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV----VMYNLFP 97 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~----~~y~~t~ 97 (345)
|...+ ..+ +.+..+||+.++. ....+.+.++.|.+.|++.... ..|..|+
T Consensus 12 il~~l-~~~--~~~~~ei~~~~~i-------~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 65 (78)
T cd00090 12 ILRLL-LEG--PLTVSELAERLGL-------SQSTVSRHLKKLEEAGLVESRREGRRVYYSLTD 65 (78)
T ss_pred HHHHH-HHC--CcCHHHHHHHHCc-------CHhHHHHHHHHHHHCCCeEEEEeccEEEEEeCC
Confidence 44555 332 2799999999999 5778899999999999997654 2566666
No 365
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=61.40 E-value=2.9 Score=32.36 Aligned_cols=50 Identities=6% Similarity=-0.017 Sum_probs=35.2
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
|++.| ...+.+.|+++|.+++.. ++... ...-+.|.|+.|+..|++.+..
T Consensus 6 Il~~l-~~~~~~~sa~ei~~~l~~-~~~~i-~~~TVYR~L~~L~~~Gli~~~~ 55 (116)
T cd07153 6 ILEVL-LESDGHLTAEEIYERLRK-KGPSI-SLATVYRTLELLEEAGLVREIE 55 (116)
T ss_pred HHHHH-HhCCCCCCHHHHHHHHHh-cCCCC-CHHHHHHHHHHHHhCCCEEEEE
Confidence 55666 332357899999999843 11001 4678999999999999998753
No 366
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=61.15 E-value=1.1 Score=32.21 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=36.4
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
|-|+| ...| -+++.+||..++. .++.++.+|..|++.|-+++.+
T Consensus 7 lRd~l-~~~g-r~s~~~Ls~~~~~-------p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 7 VRDLL-ALRG-RMEAAQISQTLNT-------PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHH-HHcC-cccHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeEeec
Confidence 45667 3334 3899999999999 7899999999999999998764
No 367
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=61.14 E-value=15 Score=29.10 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=44.8
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC-CceEEeccCCcCCC---CC-CEEEeccccccCChhHHHH
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP-CVEHVEGDMFVNVP---SG-QAIFTKSVLLNWSDEQCLK 254 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~-ri~~~~gd~~~~~p---~~-D~i~~~~vlh~~~d~~~~~ 254 (345)
..++++||=|.=.-....++++ +..+++.|..+. .++ ++.++.-|.|+|-. .+ |+|+.-+. +.+...
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~--~a~~g~~~v~DDif~P~l~iY~~a~lIYSiRP-----P~El~~ 85 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR--KAPEGVNFVVDDIFNPNLEIYEGADLIYSIRP-----PPELQP 85 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S------STTEE---SSS--HHHHTTEEEEEEES-------TTSHH
T ss_pred CCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc--ccccCcceeeecccCCCHHHhcCCcEEEEeCC-----ChHHhH
Confidence 3599999977766555555544 378999998333 333 89999999999543 45 88887653 334445
Q ss_pred HHHHHHhhCCCCCCCcEEEEE
Q 044482 255 ILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 255 iL~~~~~aL~p~~~gG~lli~ 275 (345)
-+.++++...- -++|.
T Consensus 86 ~il~lA~~v~a-----dlii~ 101 (127)
T PF03686_consen 86 PILELAKKVGA-----DLIIR 101 (127)
T ss_dssp HHHHHHHHHT------EEEEE
T ss_pred HHHHHHHHhCC-----CEEEE
Confidence 55556665543 56666
No 368
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=60.91 E-value=1.9 Score=31.95 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=37.4
Q ss_pred chhHHHHHHHc-CCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 49 GVNMSLIVNTY-SQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~-~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
+....||.+++ ++ .+..|.+-|+.|...|++++... .|++|+.++.
T Consensus 18 ~~rf~el~~~l~~i-------s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~ 71 (90)
T PF01638_consen 18 PMRFSELQRRLPGI-------SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKE 71 (90)
T ss_dssp SEEHHHHHHHSTTS--------HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHH
T ss_pred CCcHHHHHHhcchh-------HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHH
Confidence 68999999999 56 57889999999999999987642 6888888875
No 369
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=60.22 E-value=1.7 Score=42.98 Aligned_cols=64 Identities=8% Similarity=0.035 Sum_probs=49.3
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE---eeecCCCccc-cccchh
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV---MYNLFPGAKE-RTMEEF 107 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~---~y~~t~~s~~-l~~~~~ 107 (345)
+.. +...| ...+ +.+..+||+++++ ++..+-++++.|.+.|+++.... .|.+|+.++. +....|
T Consensus 8 e~~-vL~~L-~~~~-~~s~~eLA~~l~l-------~~~tVt~~i~~Le~kGlV~~~~~~~~~i~LTeeG~~~~~~g~p 75 (489)
T PRK04172 8 EKK-VLKAL-KELK-EATLEELAEKLGL-------PPEAVMRAAEWLEEKGLVKVEERVEEVYVLTEEGKKYAEEGLP 75 (489)
T ss_pred HHH-HHHHH-HhCC-CCCHHHHHHHhCc-------CHHHHHHHHHHHHhCCCEEEEeeeEEEEEECHHHHHHHHhcCH
Confidence 344 55566 3323 5899999999999 78889999999999999977653 7999999988 544443
No 370
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=60.08 E-value=48 Score=31.17 Aligned_cols=90 Identities=17% Similarity=0.063 Sum_probs=60.9
Q ss_pred cceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEecc-C----Cc-CCCCC-CEEEeccccc
Q 044482 181 KKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGD-M----FV-NVPSG-QAIFTKSVLL 245 (345)
Q Consensus 181 ~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd-~----~~-~~p~~-D~i~~~~vlh 245 (345)
.+|+=+|||. |.++..+++.+.-.++++.|. +.-++.|+ .+.....+ . .+ .-..+ |+++=..-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 3899999986 888888999998889999998 77777775 11111111 1 01 11123 87765433
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
....+..+.++++| ||++.++ -....+
T Consensus 248 ------~~~~~~~ai~~~r~---gG~v~~v-Gv~~~~ 274 (350)
T COG1063 248 ------SPPALDQALEALRP---GGTVVVV-GVYGGE 274 (350)
T ss_pred ------CHHHHHHHHHHhcC---CCEEEEE-eccCCc
Confidence 13468889999999 9999999 554333
No 371
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=59.79 E-value=1.3 Score=35.06 Aligned_cols=47 Identities=4% Similarity=0.128 Sum_probs=36.9
Q ss_pred ccccccceeec-cCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 34 GFEELNELVDV-AGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 34 ~l~~lfd~L~~-~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
+.+ ++-.| . ..| |.|.++||+.++. +...+.|.|+-|...|++.+..
T Consensus 29 Dv~-v~~~L-L~~~~-~~tvdelae~lnr-------~rStv~rsl~~L~~~GlV~Rek 76 (126)
T COG3355 29 DVE-VYKAL-LEENG-PLTVDELAEILNR-------SRSTVYRSLQNLLEAGLVEREK 76 (126)
T ss_pred HHH-HHHHH-HhhcC-CcCHHHHHHHHCc-------cHHHHHHHHHHHHHcCCeeeee
Confidence 444 45455 4 333 7999999999999 6788999999999999997754
No 372
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=59.47 E-value=2 Score=28.89 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=36.9
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEee
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMY 93 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y 93 (345)
|.++| ...+ .++.++||+.+++ .+.-++|=|..|...|++.+.-+.+
T Consensus 5 Il~~l-~~~~-~~s~~ela~~~~V-------S~~TiRRDl~~L~~~g~i~r~~GG~ 51 (57)
T PF08220_consen 5 ILELL-KEKG-KVSVKELAEEFGV-------SEMTIRRDLNKLEKQGLIKRTHGGA 51 (57)
T ss_pred HHHHH-HHcC-CEEHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEEcCEE
Confidence 45556 3323 6899999999999 5788999999999999998765543
No 373
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=59.13 E-value=1.6 Score=30.43 Aligned_cols=55 Identities=9% Similarity=-0.028 Sum_probs=39.5
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCcee-eEEeEeeecCCCcccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNIS-TIDVVMYNLFPGAKER 102 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~-~~~~~~y~~t~~s~~l 102 (345)
+...| .++ +.+..+||+++++ ....+.+-++.|.+.|+. ...+..|.+.+....+
T Consensus 5 il~~L-~~~--~~~~~eLa~~l~v-------S~~tv~~~l~~L~~~g~~i~~~~~g~~l~~~~~ll 60 (69)
T TIGR00122 5 LLALL-ADN--PFSGEKLGEALGM-------SRTAVNKHIQTLREWGVDVLTVGKGYRLPPPIPLL 60 (69)
T ss_pred HHHHH-HcC--CcCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCeEEecCCceEecCccccC
Confidence 56666 443 5789999999999 467788888889889985 3444477776555433
No 374
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.83 E-value=86 Score=24.54 Aligned_cols=84 Identities=13% Similarity=0.117 Sum_probs=56.7
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC-CceEEeccCCcCCC---CC-CEEEeccccccCChhHHH
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP-CVEHVEGDMFVNVP---SG-QAIFTKSVLLNWSDEQCL 253 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~-ri~~~~gd~~~~~p---~~-D~i~~~~vlh~~~d~~~~ 253 (345)
...+|++||-|.=..-...++++ +..++..|+.+- .++ .++++.-|.++|-- .+ |+|+.-. ++++..
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~a~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pppEl~ 84 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--TAPEGLRFVVDDITNPNISIYEGADLIYSIR-----PPPELQ 84 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--cCcccceEEEccCCCccHHHhhCccceeecC-----CCHHHH
Confidence 44699999988777555555555 377889998443 333 89999999999532 45 8776543 455555
Q ss_pred HHHHHHHhhCCCCCCCcEEEEE
Q 044482 254 KILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 254 ~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.-+-.+.++++- .++|.
T Consensus 85 ~~ildva~aVga-----~l~I~ 101 (129)
T COG1255 85 SAILDVAKAVGA-----PLYIK 101 (129)
T ss_pred HHHHHHHHhhCC-----CEEEE
Confidence 556667777665 56666
No 375
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=58.79 E-value=2.3 Score=41.87 Aligned_cols=67 Identities=12% Similarity=-0.027 Sum_probs=51.0
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCCCccc-cccchhh
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFPGAKE-RTMEEFN 108 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~-l~~~~~~ 108 (345)
.+.. |...| ..++...+.++||+.+++ +.+.+.+.+..|.+.|+++... ..|.+|+.++. +....|.
T Consensus 7 ~e~~-iL~~l-~~~~~~~~~~~la~~~~~-------~~~~v~~~~~~L~~kg~v~~~~~~~~~~~LT~eG~~~~~~G~PE 77 (494)
T PTZ00326 7 EENT-ILSKL-ESENEIVNSLALAESLNI-------DHQKVVGAIKSLESANYITTEMKKSNTWTLTEEGEDYLKNGSPE 77 (494)
T ss_pred HHHH-HHHHH-HhcCCCCCHHHHHHHcCC-------CHHHHHHHHHHHHhCCCEEEEEEEEEEEEECHHHHHHHHcCCHH
Confidence 3444 56666 321235799999999999 6788899999999999996654 39999999988 6666654
No 376
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=58.43 E-value=2.5 Score=32.55 Aligned_cols=46 Identities=2% Similarity=0.011 Sum_probs=39.0
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
+.|..+||..++. ++..+.++++.|...|++.+... .+.+|+.+..
T Consensus 43 ~~t~~eL~~~l~~-------~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~ 95 (109)
T TIGR01889 43 KLTLKEIIKEILI-------KQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRS 95 (109)
T ss_pred cCcHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHH
Confidence 6999999999999 78899999999999999986432 6777777765
No 377
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=58.00 E-value=2.7 Score=41.25 Aligned_cols=68 Identities=6% Similarity=-0.156 Sum_probs=51.2
Q ss_pred hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCCCccc-cccchh
Q 044482 32 AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFPGAKE-RTMEEF 107 (345)
Q Consensus 32 a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~-l~~~~~ 107 (345)
+++.. |...| ...+...+.++||+.+|+ +.+.+.+.+..|.+.|+++... ..|.+|+.++. +....|
T Consensus 3 ~~e~~-iL~~l-~~~~~~~~~~~la~~~g~-------~~~~v~~~~~~L~~kg~v~~~~~~~~~~~LT~eG~~~l~~G~P 73 (492)
T PLN02853 3 MAEEA-LLGAL-SNNEEISDSGQFAASHGL-------DHNEVVGVIKSLHGFRYVDAQDIKRETWVLTEEGKKYAAEGSP 73 (492)
T ss_pred hHHHH-HHHHH-HhcCCCCCHHHHHHHcCC-------CHHHHHHHHHHHHhCCCEEEEEEEEEEEEECHHHHHHHHcCCH
Confidence 34455 66666 332212689999999999 6888899999999999996654 39999999988 666655
Q ss_pred h
Q 044482 108 N 108 (345)
Q Consensus 108 ~ 108 (345)
.
T Consensus 74 E 74 (492)
T PLN02853 74 E 74 (492)
T ss_pred H
Confidence 4
No 378
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=57.06 E-value=6.1 Score=38.18 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=50.7
Q ss_pred ceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCC-----cCCCCCCEEEeccccccCChh
Q 044482 182 KLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMF-----VNVPSGQAIFTKSVLLNWSDE 250 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~-----~~~p~~D~i~~~~vlh~~~d~ 250 (345)
+|+=||||...+..++..+..+.+++++|. +.+-.... ||++...+.- +..+. +--++..+|+.|+.+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~-~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGR-NPKFLKSALKRFSPE 80 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TB-TTTCTHHHHHHS-HH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhccc-chHHHHHHHhcCCHH
Confidence 477899999888888777777899999998 34423222 7777773222 12221 233567788888888
Q ss_pred HHHHHHHHHHhhC--CCCCCCcEEEEE
Q 044482 251 QCLKILKNCYDAL--PKSRKHGRTQLR 275 (345)
Q Consensus 251 ~~~~iL~~~~~aL--~p~~~gG~lli~ 275 (345)
+....+.+.-=.+ .+ +||++-.
T Consensus 81 d~~~ff~~~Gv~~~~~~---~gr~fP~ 104 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEE---DGRVFPK 104 (409)
T ss_dssp HHHHHHHHTT--EEE-S---TTEEEET
T ss_pred HHHHHHHhcCCeEEEcC---CCEECCC
Confidence 8887777753222 24 6776665
No 379
>PRK13699 putative methylase; Provisional
Probab=56.74 E-value=20 Score=31.60 Aligned_cols=21 Identities=14% Similarity=0.007 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 252 CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 252 ~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
....+++++++||| ||.+++.
T Consensus 51 ~~~~l~E~~RVLKp---gg~l~if 71 (227)
T PRK13699 51 LQPACNEMYRVLKK---DALMVSF 71 (227)
T ss_pred HHHHHHHHHHHcCC---CCEEEEE
Confidence 45789999999999 9988775
No 380
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=55.40 E-value=74 Score=31.74 Aligned_cols=90 Identities=13% Similarity=0.081 Sum_probs=58.8
Q ss_pred cccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCc--------------C---------
Q 044482 179 ELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFV--------------N--------- 231 (345)
Q Consensus 179 ~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~--------------~--------- 231 (345)
...+|+=+|+|. |..+...++... .+++++|. ++.++.++ ..+++.-|..+ +
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 357899999886 667777777774 58999998 77788776 44433222211 1
Q ss_pred --C-CCCCEEEeccccccCChhHHHHH-HHHHHhhCCCCCCCcEEEEE
Q 044482 232 --V-PSGQAIFTKSVLLNWSDEQCLKI-LKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 232 --~-p~~D~i~~~~vlh~~~d~~~~~i-L~~~~~aL~p~~~gG~lli~ 275 (345)
. ...|+++...-. +......+ .+++.+.|+| ||+++.+
T Consensus 243 ~~~~~gaDVVIetag~---pg~~aP~lit~~~v~~mkp---GgvIVdv 284 (509)
T PRK09424 243 AEQAKEVDIIITTALI---PGKPAPKLITAEMVASMKP---GSVIVDL 284 (509)
T ss_pred HhccCCCCEEEECCCC---CcccCcchHHHHHHHhcCC---CCEEEEE
Confidence 0 123887766443 22112234 5999999999 9988877
No 381
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=55.35 E-value=3 Score=35.83 Aligned_cols=41 Identities=12% Similarity=0.024 Sum_probs=34.7
Q ss_pred CCchhHHHHHHHcCCCcccCCCc-cccccccCCCCccCceeeEEeEeee
Q 044482 47 GLGVNMSLIVNTYSQIRGINFDL-PHVIENASSSPVSRNISTIDVVMYN 94 (345)
Q Consensus 47 g~~~t~~eLA~~~~~~~~~~~d~-~~~l~rlL~~L~~~gl~~~~~~~y~ 94 (345)
+.+.|..|||+++++ . +..+.+.|+.|...|+++..++.|+
T Consensus 23 ~~~~~~~ela~~~~~-------~s~~tv~~~l~~L~~~g~i~~~~~~~~ 64 (199)
T TIGR00498 23 GYPPSIREIARAVGL-------RSPSAAEEHLKALERKGYIERDPGKPR 64 (199)
T ss_pred CCCCcHHHHHHHhCC-------CChHHHHHHHHHHHHCCCEecCCCCCC
Confidence 456799999999999 5 6788999999999999998766443
No 382
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=55.22 E-value=5.3 Score=34.88 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=39.1
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE---------eeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV---------MYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~---------~y~~t~~s~~ 101 (345)
|+|+.|||+++|+ .+..+++=|..|.+.|+++.... .|++|.-+..
T Consensus 25 ~~sa~elA~~Lgi-------s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 25 PVSADELAEELGI-------SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred CccHHHHHHHhCC-------CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence 6999999999999 68899999999999999976421 6888877765
No 383
>PRK06474 hypothetical protein; Provisional
Probab=54.98 E-value=3.3 Score=35.08 Aligned_cols=66 Identities=8% Similarity=0.048 Sum_probs=48.4
Q ss_pred HHHhhhhccccccceeeccCCCchhHHHHHHHcC-CCcccCCCccccccccCCCCccCceeeEEe---------EeeecC
Q 044482 27 MHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYS-QIRGINFDLPHVIENASSSPVSRNISTIDV---------VMYNLF 96 (345)
Q Consensus 27 ~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~-~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---------~~y~~t 96 (345)
.+|.-..++. |++.| ...+++.|+.+|++.++ + ....+.|-|+.|...|++.... ..|+.+
T Consensus 6 ~~La~p~R~~-Il~~L-~~~~~~~ta~el~~~l~~i-------s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~ 76 (178)
T PRK06474 6 EILMHPVRMK-ICQVL-MRNKEGLTPLELVKILKDV-------PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAIN 76 (178)
T ss_pred HhhCCHHHHH-HHHHH-HhCCCCCCHHHHHHHhcCC-------CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEec
Confidence 3555566777 88888 54343589999999994 4 3467899999999999998643 157777
Q ss_pred CCccc
Q 044482 97 PGAKE 101 (345)
Q Consensus 97 ~~s~~ 101 (345)
+.+-.
T Consensus 77 ~~~~~ 81 (178)
T PRK06474 77 EEDAK 81 (178)
T ss_pred cceee
Confidence 76544
No 384
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=54.28 E-value=5.5 Score=35.77 Aligned_cols=60 Identities=15% Similarity=0.020 Sum_probs=47.2
Q ss_pred hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCcccc
Q 044482 32 AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKER 102 (345)
Q Consensus 32 a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~l 102 (345)
.-+.+ |.=+| .+ | |.|.+||-..+++ .+..+-.=++-|...|++.++++.|++|+++..+
T Consensus 13 ekRk~-lLllL-~e-g-Pkti~EI~~~l~v-------s~~ai~pqiKkL~~~~LV~~~~~~Y~LS~~G~ii 72 (260)
T COG4742 13 EKRKD-LLLLL-KE-G-PKTIEEIKNELNV-------SSSAILPQIKKLKDKGLVVQEGDRYSLSSLGKII 72 (260)
T ss_pred HHHHH-HHHHH-Hh-C-CCCHHHHHHHhCC-------CcHHHHHHHHHHhhCCCEEecCCEEEecchHHHH
Confidence 33445 66566 44 3 7899999999999 4556666667788999999999999999999873
No 385
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=54.17 E-value=1.5e+02 Score=25.91 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=50.7
Q ss_pred ccceEEecCCcc----HHHHHHHHHCCCCeEEEeeh--hhHhhhCC---------CceEEeccCCc-CCC--CC-CEEEe
Q 044482 180 LKKLVDVASCLG----ANMSLIVNTYPQITGINFDL--PYVIKNAP---------CVEHVEGDMFV-NVP--SG-QAIFT 240 (345)
Q Consensus 180 ~~~vlDiGgG~G----~~~~~l~~~~p~~~~~~~Dl--p~~i~~a~---------ri~~~~gd~~~-~~p--~~-D~i~~ 240 (345)
.+.|+++.++.| .++.+.+.++-+-+.+++-. +...+..+ -++|+.|+-.+ -.+ .+ |++++
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEEE
Confidence 467888864433 44555556666656544432 22222111 36888888544 233 34 87765
Q ss_pred ccccccCChhHHH-HHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 241 KSVLLNWSDEQCL-KILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 241 ~~vlh~~~d~~~~-~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
- ...++.. ++|+.+. +.| .|.+++. ....
T Consensus 122 D-----c~~~d~~~~vl~~~~--~~~---~GaVVV~-~Na~ 151 (218)
T PF07279_consen 122 D-----CKREDFAARVLRAAK--LSP---RGAVVVC-YNAF 151 (218)
T ss_pred e-----CCchhHHHHHHHHhc--cCC---CceEEEE-eccc
Confidence 3 4556656 7777543 556 6788888 5443
No 386
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=53.86 E-value=0.85 Score=31.80 Aligned_cols=59 Identities=3% Similarity=-0.025 Sum_probs=40.3
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-eeecCCCc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-MYNLFPGA 99 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-~y~~t~~s 99 (345)
|.++| ...+.|++..+|++.+.. .+... .+..++|-|++|-..|++.+.+. .+.+|+.+
T Consensus 3 IL~~L-~~~~~P~g~~~l~~~L~~-~g~~~-se~avRrrLr~me~~Glt~~~g~~G~~iT~~G 62 (66)
T PF08461_consen 3 ILRIL-AESDKPLGRKQLAEELKL-RGEEL-SEEAVRRRLRAMERDGLTRKVGRQGRIITEKG 62 (66)
T ss_pred HHHHH-HHcCCCCCHHHHHHHHHh-cChhh-hHHHHHHHHHHHHHCCCccccCCcccccCHHH
Confidence 44556 333458999999999977 33332 25889999999999997765432 45565544
No 387
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=53.53 E-value=14 Score=36.17 Aligned_cols=121 Identities=14% Similarity=0.119 Sum_probs=75.7
Q ss_pred CchhHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------
Q 044482 148 LPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------- 219 (345)
Q Consensus 148 ~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------- 219 (345)
.|+....|+..|.+.............+ ....+|=||-|.|.+...+....|..+.+.+.+ |+|++.|+
T Consensus 267 ~~~l~s~~h~~m~~g~aL~~n~~~~~~~---~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q 343 (482)
T KOG2352|consen 267 KPELASQYHQMMIGGLALIMNRPPQKLD---TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ 343 (482)
T ss_pred CcccCcchhhhhhccceeccccCchhcc---ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh
Confidence 4555666777776544322221222222 345677788888999999999999988888888 99999887
Q ss_pred --CceEEeccCCc----CC---CCC---CEEEec----cccccC--Chh--HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 --CVEHVEGDMFV----NV---PSG---QAIFTK----SVLLNW--SDE--QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 --ri~~~~gd~~~----~~---p~~---D~i~~~----~vlh~~--~d~--~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|..+...|-.+ .. ++. |+++.- . -|-. +.. -+..+|..+..+|+| .|-++|+
T Consensus 344 ~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p---~g~f~in 415 (482)
T KOG2352|consen 344 SDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPP---RGMFIIN 415 (482)
T ss_pred hhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCc---cceEEEE
Confidence 33333333322 11 111 665541 2 2322 222 346799999999999 8988777
No 388
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=53.53 E-value=4.9 Score=38.88 Aligned_cols=43 Identities=7% Similarity=-0.089 Sum_probs=36.2
Q ss_pred CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-EeeecC
Q 044482 47 GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-VMYNLF 96 (345)
Q Consensus 47 g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-~~y~~t 96 (345)
|++.|.++|++++++ +++.++++|+.|...|++.+.+ +.|.+.
T Consensus 308 g~~~t~~~La~~l~~-------~~~~v~~iL~~L~~agLI~~~~~g~~~l~ 351 (412)
T PRK04214 308 GKALDVDEIRRLEPM-------GYDELGELLCELARIGLLRRGERGQWVLA 351 (412)
T ss_pred CCCCCHHHHHHHhCC-------CHHHHHHHHHHHHhCCCeEecCCCceEec
Confidence 468999999999999 7899999999999999998654 245544
No 389
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=53.39 E-value=24 Score=28.56 Aligned_cols=66 Identities=20% Similarity=0.163 Sum_probs=41.6
Q ss_pred eEEEeeh-hhHhhhCC----------CceEEeccCCc---CCCC-C-CEEEeccccccCC---------hhHHHHHHHHH
Q 044482 205 TGINFDL-PYVIKNAP----------CVEHVEGDMFV---NVPS-G-QAIFTKSVLLNWS---------DEQCLKILKNC 259 (345)
Q Consensus 205 ~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~---~~p~-~-D~i~~~~vlh~~~---------d~~~~~iL~~~ 259 (345)
++.+||+ ++.++.++ |++++..+-.. .++. . |+++++- -++| .+.-...|+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 4678898 55566544 67777754332 3445 3 7776652 2333 22346789999
Q ss_pred HhhCCCCCCCcEEEEE
Q 044482 260 YDALPKSRKHGRTQLR 275 (345)
Q Consensus 260 ~~aL~p~~~gG~lli~ 275 (345)
.+.|+| ||.+.|+
T Consensus 79 l~lL~~---gG~i~iv 91 (140)
T PF06962_consen 79 LELLKP---GGIITIV 91 (140)
T ss_dssp HHHEEE---EEEEEEE
T ss_pred HHhhcc---CCEEEEE
Confidence 999999 9988888
No 390
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=53.30 E-value=1.6 Score=33.38 Aligned_cols=45 Identities=7% Similarity=0.077 Sum_probs=36.6
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeE
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTI 88 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~ 88 (345)
+.. |...|..+ + +.|..+||+++++ .+..+.+.++.|...|++..
T Consensus 5 D~~-il~~L~~~-~-~~~~~~la~~l~~-------s~~tv~~~l~~L~~~g~i~~ 49 (108)
T smart00344 5 DRK-ILEELQKD-A-RISLAELAKKVGL-------SPSTVHNRVKRLEEEGVIKG 49 (108)
T ss_pred HHH-HHHHHHHh-C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeec
Confidence 445 66677333 3 5899999999999 68899999999999999984
No 391
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=52.74 E-value=5.6 Score=34.83 Aligned_cols=46 Identities=9% Similarity=0.029 Sum_probs=39.7
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s~~ 101 (345)
.+|..+||+.+++ .+..+.+.|+.|...|++++... .+.+|+.++.
T Consensus 21 ~IS~~eLA~~L~i-------S~~Tvsr~Lk~LEe~GlI~R~~~~r~~~v~LTekG~~ 70 (217)
T PRK14165 21 KISSSEFANHTGT-------SSKTAARILKQLEDEGYITRTIVPRGQLITITEKGLD 70 (217)
T ss_pred CcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEEEcCCceEEEECHHHHH
Confidence 5899999999999 68899999999999999987642 6777777766
No 392
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.04 E-value=81 Score=29.46 Aligned_cols=93 Identities=14% Similarity=0.067 Sum_probs=61.1
Q ss_pred cccccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCcC------------CCC--CCEE
Q 044482 177 FKELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFVN------------VPS--GQAI 238 (345)
Q Consensus 177 ~~~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~~------------~p~--~D~i 238 (345)
+....++|=+|+|. |..+...++.+.-.++++.|+ +.-++.|+ ..+.+.-+.-.. ... .|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 55678999999885 788888888898889999999 77788887 221111111101 110 1555
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
+-...+ ...++....++++ ||.+++. ++-.+
T Consensus 247 ~dCsG~--------~~~~~aai~a~r~---gGt~vlv-g~g~~ 277 (354)
T KOG0024|consen 247 FDCSGA--------EVTIRAAIKATRS---GGTVVLV-GMGAE 277 (354)
T ss_pred EEccCc--------hHHHHHHHHHhcc---CCEEEEe-ccCCC
Confidence 544433 2456777889999 9998888 65444
No 393
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=51.34 E-value=25 Score=32.19 Aligned_cols=53 Identities=15% Similarity=0.106 Sum_probs=44.8
Q ss_pred CceEEeccCCcCC---CCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 CVEHVEGDMFVNV---PSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 ri~~~~gd~~~~~---p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+.++.+|+.+-+ |-+ |-|++..+=-..+|.+...++.++.+.+.| |.+++.-
T Consensus 308 RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~---gA~VifR 365 (414)
T COG5379 308 RVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEA---GARVIFR 365 (414)
T ss_pred heeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCC---CcEEEEe
Confidence 8999999998732 323 999999888777899999999999999999 8888776
No 394
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=50.87 E-value=68 Score=29.45 Aligned_cols=85 Identities=9% Similarity=-0.070 Sum_probs=45.9
Q ss_pred cceEEecCCc-c-HHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceE-EeccCCcCCCCCCEEEeccccccCChhHHHH
Q 044482 181 KKLVDVASCL-G-ANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEH-VEGDMFVNVPSGQAIFTKSVLLNWSDEQCLK 254 (345)
Q Consensus 181 ~~vlDiGgG~-G-~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~-~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~ 254 (345)
.+|.=||+|. | .++..+.+.....+++++|. ++.++.++ ++.. ...+..+...+.|+|++.- +......
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-----p~~~~~~ 81 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-----PVGASGA 81 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-----CHHHHHH
Confidence 5688888775 3 34444544433247888898 55555443 2211 1111111122348887663 3344456
Q ss_pred HHHHHHhhCCCCCCCcEEE
Q 044482 255 ILKNCYDALPKSRKHGRTQ 273 (345)
Q Consensus 255 iL~~~~~aL~p~~~gG~ll 273 (345)
+++++...+++ +..++
T Consensus 82 v~~~l~~~l~~---~~iv~ 97 (307)
T PRK07502 82 VAAEIAPHLKP---GAIVT 97 (307)
T ss_pred HHHHHHhhCCC---CCEEE
Confidence 77888888888 66443
No 395
>PRK11524 putative methyltransferase; Provisional
Probab=49.67 E-value=33 Score=31.27 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=17.9
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 253 LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 253 ~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
...|+.+++.|+| ||.++|+
T Consensus 60 ~~~l~~~~rvLK~---~G~i~i~ 79 (284)
T PRK11524 60 YEWIDECHRVLKK---QGTMYIM 79 (284)
T ss_pred HHHHHHHHHHhCC---CcEEEEE
Confidence 4689999999999 9999887
No 396
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=49.53 E-value=24 Score=30.23 Aligned_cols=49 Identities=8% Similarity=0.038 Sum_probs=33.4
Q ss_pred HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA 218 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a 218 (345)
..+.+++.+. .....|||-=||+|+++.+..+.. -+++++|+ ++.++.|
T Consensus 180 l~~~lI~~~t--~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 180 LIERLIKAST--NPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIA 229 (231)
T ss_dssp HHHHHHHHHS---TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHH
T ss_pred HHHHHHHhhh--ccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHh
Confidence 4455666543 345789999999999999887764 46999999 6665543
No 397
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=49.41 E-value=2.9 Score=29.55 Aligned_cols=41 Identities=5% Similarity=-0.019 Sum_probs=35.0
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecC
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLF 96 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t 96 (345)
+.|-++||..+|+ ....+.++|+.|...|+++...+.+...
T Consensus 28 ~lt~~~iA~~~g~-------sr~tv~r~l~~l~~~g~I~~~~~~i~I~ 68 (76)
T PF13545_consen 28 PLTQEEIADMLGV-------SRETVSRILKRLKDEGIIEVKRGKIIIL 68 (76)
T ss_dssp ESSHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEEEETTEEEES
T ss_pred cCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEEcCCEEEEC
Confidence 5799999999999 5788999999999999999776655543
No 398
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=48.87 E-value=2.5 Score=24.87 Aligned_cols=31 Identities=3% Similarity=-0.042 Sum_probs=22.2
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCcee
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNIS 86 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~ 86 (345)
++|-.|||..+|+ -++-+.|+|.-|...|++
T Consensus 2 ~mtr~diA~~lG~-------t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL-------TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS--------HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC-------cHHHHHHHHHHHHHcCCC
Confidence 4788999999999 567788888777766653
No 399
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=48.41 E-value=74 Score=28.76 Aligned_cols=75 Identities=15% Similarity=-0.002 Sum_probs=43.7
Q ss_pred eEEecCCc--cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--C-ceEEeccCCcCCCCCCEEEeccccccCChhHHHHHH
Q 044482 183 LVDVASCL--GANMSLIVNTYPQITGINFDL-PYVIKNAP--C-VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKIL 256 (345)
Q Consensus 183 vlDiGgG~--G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--r-i~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~iL 256 (345)
|.=||+|. |.++..+.++ +.+++++|. ++.++.+. + +.....+. +...+.|+|++. .+.....+++
T Consensus 3 I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVila-----vp~~~~~~~~ 74 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILA-----LPIGLLLPPS 74 (279)
T ss_pred EEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEc-----CCHHHHHHHH
Confidence 45567664 4455555544 457888897 55555544 2 11111111 112234888876 4566677889
Q ss_pred HHHHhhCCC
Q 044482 257 KNCYDALPK 265 (345)
Q Consensus 257 ~~~~~aL~p 265 (345)
+++...++|
T Consensus 75 ~~l~~~l~~ 83 (279)
T PRK07417 75 EQLIPALPP 83 (279)
T ss_pred HHHHHhCCC
Confidence 999988888
No 400
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=47.59 E-value=5.4 Score=34.97 Aligned_cols=56 Identities=7% Similarity=0.065 Sum_probs=43.4
Q ss_pred HHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeE
Q 044482 23 FNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTI 88 (345)
Q Consensus 23 f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~ 88 (345)
+..-.++.+.+++. |.++|...| |+.+.|||+++|+ ...-+..=+..|...|+++.
T Consensus 14 ~dv~kalaS~vRv~-Il~lL~~k~--plNvneiAe~lgL-------pqst~s~~ik~Le~aGlirT 69 (308)
T COG4189 14 LDVLKALASKVRVA-ILQLLHRKG--PLNVNEIAEALGL-------PQSTMSANIKVLEKAGLIRT 69 (308)
T ss_pred chHHHHHHHHHHHH-HHHHHHHhC--CCCHHHHHHHhCC-------chhhhhhhHHHHHhcCceee
Confidence 44567888899998 999996653 6999999999999 33444555677888899854
No 401
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=47.53 E-value=69 Score=29.77 Aligned_cols=88 Identities=14% Similarity=0.139 Sum_probs=50.7
Q ss_pred ccccceEEecC-CccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC--CceEEeccCCcCCCC--C-CEEEeccccccCCh
Q 044482 178 KELKKLVDVAS-CLGANMSLIVNT-YPQITGINFDL-PYVIKNAP--CVEHVEGDMFVNVPS--G-QAIFTKSVLLNWSD 249 (345)
Q Consensus 178 ~~~~~vlDiGg-G~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~~~p~--~-D~i~~~~vlh~~~d 249 (345)
....+||=+|+ |.|.++..++++ ....++++.|. ++-++.++ ...... ++..+ + |+|+=.- ..
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~----~~~~~~~g~d~viD~~-----G~ 232 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLI----DDIPEDLAVDHAFECV-----GG 232 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeeh----hhhhhccCCcEEEECC-----CC
Confidence 44578887884 456666777775 55667888887 54455444 111111 11111 3 6665211 10
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
......+....+.|++ +|+++++ -.
T Consensus 233 ~~~~~~~~~~~~~l~~---~G~iv~~-G~ 257 (341)
T cd08237 233 RGSQSAINQIIDYIRP---QGTIGLM-GV 257 (341)
T ss_pred CccHHHHHHHHHhCcC---CcEEEEE-ee
Confidence 0012457888899999 9999988 53
No 402
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=47.51 E-value=58 Score=31.60 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=65.6
Q ss_pred ccceEEec-CCccH------HHHHHHHHCCCCeEEEeeh--hhHhhhCC------CceEEeccCCc-CCC----------
Q 044482 180 LKKLVDVA-SCLGA------NMSLIVNTYPQITGINFDL--PYVIKNAP------CVEHVEGDMFV-NVP---------- 233 (345)
Q Consensus 180 ~~~vlDiG-gG~G~------~~~~l~~~~p~~~~~~~Dl--p~~i~~a~------ri~~~~gd~~~-~~p---------- 233 (345)
+..|+=+| -|+|. ++..+.++.-..-.+..|. |..+++.+ ++.|..-+--. |..
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak 179 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAK 179 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHH
Confidence 35577777 34544 3333444333334688887 88887766 66666643222 321
Q ss_pred -CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCC
Q 044482 234 -SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPES 283 (345)
Q Consensus 234 -~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~ 283 (345)
.+ |++++-..=.+.-|++...-++++.++++| .=.|+|+ |.....+
T Consensus 180 ~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P---~E~llVv-Dam~GQd 227 (451)
T COG0541 180 EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINP---DETLLVV-DAMIGQD 227 (451)
T ss_pred HcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCC---CeEEEEE-ecccchH
Confidence 12 888886655555577788889999999999 8899999 8877654
No 403
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=47.48 E-value=4 Score=34.54 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=37.5
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeE
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTI 88 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~ 88 (345)
... |.++| ...| .+|.++||+.+|+ ....++++|..|...|++..
T Consensus 24 ~~~-Vl~~L-~~~g-~~tdeeLA~~Lgi-------~~~~VRk~L~~L~e~gLv~~ 68 (178)
T PRK06266 24 GFE-VLKAL-IKKG-EVTDEEIAEQTGI-------KLNTVRKILYKLYDARLADY 68 (178)
T ss_pred HhH-HHHHH-HHcC-CcCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCeEE
Confidence 345 77777 3333 6999999999999 68899999999999999984
No 404
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=47.17 E-value=4.6 Score=27.71 Aligned_cols=46 Identities=11% Similarity=0.171 Sum_probs=33.5
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCcc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAK 100 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~ 100 (345)
|++.+++.+++|. . -.+.....+..+...|+++.+++.+++|+.+.
T Consensus 20 Gi~~~~~~~~~g~----~--~~~~~~~~l~~l~~~Gll~~~~~~l~lT~~G~ 65 (66)
T PF06969_consen 20 GIDLSEFEQRFGI----D--FAEEFQKELEELQEDGLLEIDGGRLRLTEKGR 65 (66)
T ss_dssp EEEHHHHHHHTT--------THHH-HHHHHHHHHTTSEEE-SSEEEE-TTTG
T ss_pred CcCHHHHHHHHCc----C--HHHHHHHHHHHHHHCCCEEEeCCEEEECcccC
Confidence 5889999999998 1 13444666778889999999999999998764
No 405
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=45.87 E-value=1.1e+02 Score=27.98 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=50.5
Q ss_pred ccceEEec-CCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCCCceEEeccCCcCCCCC-CEEEeccccccCChhHHHHHH
Q 044482 180 LKKLVDVA-SCLGANMSLIVNTYPQITGINFDL-PYVIKNAPCVEHVEGDMFVNVPSG-QAIFTKSVLLNWSDEQCLKIL 256 (345)
Q Consensus 180 ~~~vlDiG-gG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ri~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~~~iL 256 (345)
..+++=+| ||.|.++..+++...--.++++|. ++-++.+....++ |..+..+.+ |+|+=. ... ...+
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i--~~~~~~~~g~Dvvid~------~G~--~~~~ 214 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVL--DPEKDPRRDYRAIYDA------SGD--PSLI 214 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcccc--ChhhccCCCCCEEEEC------CCC--HHHH
Confidence 45677667 567888888998875334666776 4445544422111 111112233 776533 211 2457
Q ss_pred HHHHhhCCCCCCCcEEEEEecc
Q 044482 257 KNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 257 ~~~~~aL~p~~~gG~lli~~d~ 278 (345)
..+.+.|++ +|+++++ -.
T Consensus 215 ~~~~~~l~~---~G~iv~~-G~ 232 (308)
T TIGR01202 215 DTLVRRLAK---GGEIVLA-GF 232 (308)
T ss_pred HHHHHhhhc---CcEEEEE-ee
Confidence 888899999 9999988 44
No 406
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=45.68 E-value=5.3 Score=27.33 Aligned_cols=36 Identities=6% Similarity=-0.015 Sum_probs=29.5
Q ss_pred Cch-hHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 48 LGV-NMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 48 ~~~-t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
... |..+||+++++ ....+++.|+.|.+.|+++...
T Consensus 22 ~~lps~~~la~~~~v-------sr~tvr~al~~L~~~g~i~~~~ 58 (64)
T PF00392_consen 22 DRLPSERELAERYGV-------SRTTVREALRRLEAEGLIERRP 58 (64)
T ss_dssp SBE--HHHHHHHHTS--------HHHHHHHHHHHHHTTSEEEET
T ss_pred CEeCCHHHHHHHhcc-------CCcHHHHHHHHHHHCCcEEEEC
Confidence 356 88999999999 5678999999999999997754
No 407
>PRK08507 prephenate dehydrogenase; Validated
Probab=45.35 E-value=75 Score=28.63 Aligned_cols=76 Identities=13% Similarity=0.068 Sum_probs=43.1
Q ss_pred eEEecCCc--cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCcCCCCCCEEEeccccccCChhHHHHHHH
Q 044482 183 LVDVASCL--GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILK 257 (345)
Q Consensus 183 vlDiGgG~--G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~iL~ 257 (345)
|.=||+|. |.++..+.++....+++++|. ++.++.+. .+.....+. .+..+.|+|++. .++.....+++
T Consensus 3 I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~-~~~~~aD~Vila-----vp~~~~~~~~~ 76 (275)
T PRK08507 3 IGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSF-EELKKCDVIFLA-----IPVDAIIEILP 76 (275)
T ss_pred EEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCH-HHHhcCCEEEEe-----CcHHHHHHHHH
Confidence 55567665 445555655543457888887 54444443 221011121 122235887765 46677778888
Q ss_pred HHHhhCCC
Q 044482 258 NCYDALPK 265 (345)
Q Consensus 258 ~~~~aL~p 265 (345)
++.. +++
T Consensus 77 ~l~~-l~~ 83 (275)
T PRK08507 77 KLLD-IKE 83 (275)
T ss_pred HHhc-cCC
Confidence 8888 887
No 408
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=45.07 E-value=9.1 Score=28.47 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=14.6
Q ss_pred eEEecCCccHHHHHHHHHC
Q 044482 183 LVDVASCLGANMSLIVNTY 201 (345)
Q Consensus 183 vlDiGgG~G~~~~~l~~~~ 201 (345)
=+|||||.|....+-.+.+
T Consensus 6 NIDIGcG~GNTmda~fRsc 24 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRSC 24 (124)
T ss_pred ccccccCCCcchhhhhhcc
Confidence 4799999999877655544
No 409
>PRK11524 putative methyltransferase; Provisional
Probab=44.84 E-value=30 Score=31.48 Aligned_cols=53 Identities=11% Similarity=0.039 Sum_probs=39.4
Q ss_pred HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-Cce
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-CVE 222 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-ri~ 222 (345)
..+.+++.+. .....|||-=||+|+++.+..+. +-+++++|+ ++.++.|. |++
T Consensus 197 L~erlI~~~S--~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 197 LLKRIILASS--NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence 3445555543 34578999999999999887765 457999998 88888777 653
No 410
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=44.69 E-value=72 Score=29.09 Aligned_cols=79 Identities=16% Similarity=-0.022 Sum_probs=51.9
Q ss_pred ceEEecCC--ccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEec-cC-CcCCCCCCEEEeccccccCChhHHHH
Q 044482 182 KLVDVASC--LGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEG-DM-FVNVPSGQAIFTKSVLLNWSDEQCLK 254 (345)
Q Consensus 182 ~vlDiGgG--~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~g-d~-~~~~p~~D~i~~~~vlh~~~d~~~~~ 254 (345)
+|+=+|.| .|.++..+.++.+...+++.|. ...++.+. .+..... |. ......+|+|+++ .|-.....
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~Viva-----vPi~~~~~ 79 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVA-----VPIEATEE 79 (279)
T ss_pred EEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEe-----ccHHHHHH
Confidence 45555544 4667777778888888899998 45555554 4433322 22 2244456998887 45566678
Q ss_pred HHHHHHhhCCC
Q 044482 255 ILKNCYDALPK 265 (345)
Q Consensus 255 iL~~~~~aL~p 265 (345)
+++++...|++
T Consensus 80 ~l~~l~~~l~~ 90 (279)
T COG0287 80 VLKELAPHLKK 90 (279)
T ss_pred HHHHhcccCCC
Confidence 89999999998
No 411
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=44.19 E-value=43 Score=33.92 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=33.8
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCC-eEEEeehhhH
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQI-TGINFDLPYV 214 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~-~~~~~Dlp~~ 214 (345)
+-+.|.=+.....|||+||..|.++.-.++..|-. -++++|+-++
T Consensus 35 ln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 35 LNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred HHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 34555512345689999999999999999999854 4699998544
No 412
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=43.63 E-value=23 Score=33.86 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=46.3
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCCc----CCCCCCEEEeccccccCChh
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMFV----NVPSGQAIFTKSVLLNWSDE 250 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~----~~p~~D~i~~~~vlh~~~d~ 250 (345)
..|+=||+|...+..++.....+-+++++|- |.+-++.. ||+|......+ ..| +.--++...|.-|+++
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p-~~~~fl~sal~~ft~~ 82 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNP-GNGHFLKSALARFTPE 82 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCC-CcchHHHHHHHhCCHH
Confidence 3578899998877777777777889999997 55544433 66665544333 233 1223445555555555
Q ss_pred HHHHHHHH
Q 044482 251 QCLKILKN 258 (345)
Q Consensus 251 ~~~~iL~~ 258 (345)
+.+..+.+
T Consensus 83 d~i~~~e~ 90 (408)
T COG2081 83 DFIDWVEG 90 (408)
T ss_pred HHHHHHHh
Confidence 44444433
No 413
>PHA02943 hypothetical protein; Provisional
Probab=43.47 E-value=6.8 Score=31.96 Aligned_cols=43 Identities=16% Similarity=0.030 Sum_probs=34.6
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
|.++| ..| ..|..|||+++|+ .-..++-.|..|...|.+.+..
T Consensus 16 ILE~L-k~G--~~TtseIAkaLGl-------S~~qa~~~LyvLErEG~VkrV~ 58 (165)
T PHA02943 16 TLRLL-ADG--CKTTSRIANKLGV-------SHSMARNALYQLAKEGMVLKVE 58 (165)
T ss_pred HHHHH-hcC--CccHHHHHHHHCC-------CHHHHHHHHHHHHHcCceEEEe
Confidence 66677 543 4799999999999 3567788899999999998754
No 414
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=43.40 E-value=15 Score=30.30 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=41.0
Q ss_pred CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCccc
Q 044482 47 GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGAKE 101 (345)
Q Consensus 47 g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s~~ 101 (345)
+++.++.+|+..++. +|...+..-||-|...|+++..+. +|..|+.+..
T Consensus 96 dR~K~laDic~~ln~------eDth~itYslrKL~k~gLit~t~~gkevTy~vTa~G~~ 148 (199)
T COG5631 96 DRPKSLADICQMLNR------EDTHNITYSLRKLLKGGLITRTGSGKEVTYEVTALGHR 148 (199)
T ss_pred CchhhHHHHHHHhcc------ccchhHHHHHHHHHhccceecCCCCceEEEEEecchHH
Confidence 578999999999998 367788888999999999987643 8988888865
No 415
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=43.33 E-value=31 Score=27.84 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=19.3
Q ss_pred EecCCcc--HHHHHHH--HHCCCCeEEEeeh-hhHh
Q 044482 185 DVASCLG--ANMSLIV--NTYPQITGINFDL-PYVI 215 (345)
Q Consensus 185 DiGgG~G--~~~~~l~--~~~p~~~~~~~Dl-p~~i 215 (345)
|||++.| .....++ ...|..+++.+|. |...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~ 36 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNF 36 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHH
Confidence 8999999 6666654 4578889999997 6543
No 416
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=43.26 E-value=19 Score=32.70 Aligned_cols=37 Identities=8% Similarity=0.020 Sum_probs=28.0
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhh
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIK 216 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~ 216 (345)
..++|||+|||+|.-.+....+. ..++.-+|. .++++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLR 153 (282)
T ss_pred cCceeEecCCcccccchhhhhhc-cceeeeEecchhhee
Confidence 35899999999999888877664 267788887 44553
No 417
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=42.40 E-value=4 Score=29.28 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=20.5
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCC
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSP 80 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L 80 (345)
|+..| +. |+|+|.++||+++|. ..+.+...|..+
T Consensus 29 LLr~L-A~-G~PVt~~~LA~a~g~-------~~e~v~~~L~~~ 62 (77)
T PF12324_consen 29 LLRLL-AK-GQPVTVEQLAAALGW-------PVEEVRAALAAM 62 (77)
T ss_dssp HHHHH-TT-TS-B-HHHHHHHHT---------HHHHHHHHHH-
T ss_pred HHHHH-Hc-CCCcCHHHHHHHHCC-------CHHHHHHHHHhC
Confidence 55667 65 469999999999999 345555555443
No 418
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=42.23 E-value=13 Score=30.16 Aligned_cols=41 Identities=2% Similarity=-0.062 Sum_probs=34.9
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecC
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLF 96 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t 96 (345)
+.|++|||.+.|. ..+.+.--|..+++-|-+.+.+. +|+.+
T Consensus 6 a~T~eELA~~FGv-------ttRkvaStLa~~ta~Grl~Rv~q~gkfRy~iP 50 (155)
T PF07789_consen 6 AKTAEELAGKFGV-------TTRKVASTLAMVTATGRLIRVNQNGKFRYCIP 50 (155)
T ss_pred cccHHHHHHHhCc-------chhhhHHHHHHHHhcceeEEecCCCceEEeCC
Confidence 6899999999999 67888888999999998876642 78775
No 419
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=42.14 E-value=92 Score=23.51 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=48.1
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCc------cCCHHHHH
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAK------GRTAGEFK 316 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~------~rt~~e~~ 316 (345)
+|=|++.++..++|+++...-+ +++++. +.|.+ +. . ..+-. .--++|++. .-.++++.
T Consensus 4 vLIHYp~~d~~~~l~~La~~t~-----~~~ifT---fAP~T---~~---L-~~m~~-iG~lFP~~dRsp~i~~~~e~~l~ 67 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLASRTR-----GSLIFT---FAPRT---PL---L-ALMHA-IGKLFPRPDRSPRIYPHREEDLR 67 (97)
T ss_pred eEeccCHHHHHHHHHHHHHhcc-----CcEEEE---ECCCC---HH---H-HHHHH-HhccCCCCCCCCcEEEeCHHHHH
Confidence 4447789999999999876544 355555 12211 11 0 00000 001222221 23688999
Q ss_pred HHHHHCCCCceEEEecCCc---eEEEEEE
Q 044482 317 ALAMAAGFGTIKVICRSYC---YWVIEFY 342 (345)
Q Consensus 317 ~ll~~aGf~~~~~~~~~~~---~~vi~~~ 342 (345)
+.++++||++.+...+... ..++|++
T Consensus 68 ~~l~~~g~~~~r~~ris~gFY~S~llE~~ 96 (97)
T PF07109_consen 68 RALAAAGWRIGRTERISSGFYISQLLEAV 96 (97)
T ss_pred HHHHhCCCeeeecccccCcChHHHHhhcc
Confidence 9999999999988777532 2355544
No 420
>PHA01634 hypothetical protein
Probab=42.07 E-value=18 Score=28.80 Aligned_cols=37 Identities=8% Similarity=0.036 Sum_probs=27.6
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhh
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKN 217 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~ 217 (345)
.++|+|||++.|..++.++-+.- -+++.++. |...+.
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~ 66 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKK 66 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHH
Confidence 47999999999999999987642 25677776 444443
No 421
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=41.64 E-value=5.4 Score=33.07 Aligned_cols=43 Identities=7% Similarity=-0.029 Sum_probs=36.1
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID 89 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~ 89 (345)
|++.|... | .+|-++||+.+|+ ....++++|..|...|+++..
T Consensus 19 Vl~aL~~~-~-~~tdEeLa~~Lgi-------~~~~VRk~L~~L~e~~Lv~~~ 61 (158)
T TIGR00373 19 VLFSLGIK-G-EFTDEEISLELGI-------KLNEVRKALYALYDAGLADYK 61 (158)
T ss_pred HHHHHhcc-C-CCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCceee
Confidence 77777333 3 6999999999999 688999999999999999643
No 422
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=41.26 E-value=1.6e+02 Score=27.12 Aligned_cols=88 Identities=9% Similarity=-0.064 Sum_probs=52.9
Q ss_pred cccccceEEec-CCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCcCCCCC-CEEEeccccccCChhH
Q 044482 177 FKELKKLVDVA-SCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFVNVPSG-QAIFTKSVLLNWSDEQ 251 (345)
Q Consensus 177 ~~~~~~vlDiG-gG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~ 251 (345)
.....+||=.| |+.|..+..+++.. +.++++.+. ++-.+.++ ....+. |..++.+++ |+++.....
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~~vi-~~~~~~~~~~d~~i~~~~~------- 233 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAASAG-GAYDTPPEPLDAAILFAPA------- 233 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCceec-cccccCcccceEEEECCCc-------
Confidence 55667888777 55677778888876 567777776 55455555 222211 111111223 655432211
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 252 CLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 252 ~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
...+....+.|++ +|++++. -.
T Consensus 234 -~~~~~~~~~~l~~---~G~~v~~-G~ 255 (329)
T TIGR02822 234 -GGLVPPALEALDR---GGVLAVA-GI 255 (329)
T ss_pred -HHHHHHHHHhhCC---CcEEEEE-ec
Confidence 1357788899999 9999988 54
No 423
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=40.51 E-value=55 Score=33.39 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=50.7
Q ss_pred ceEEecCCccHHHHHHHHH--CCCCeEEEeeh-hhHhhhCC--CceEEeccCCcC--CC-----CCCEEEeccccccCCh
Q 044482 182 KLVDVASCLGANMSLIVNT--YPQITGINFDL-PYVIKNAP--CVEHVEGDMFVN--VP-----SGQAIFTKSVLLNWSD 249 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~--~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~~--~p-----~~D~i~~~~vlh~~~d 249 (345)
+|+= ||.|.++..+++. ..+.+++++|. |+.++.++ ....+.||..++ +. ++|++++. .+ ++
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~--~~--d~ 475 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVIT--CN--EP 475 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEE--eC--CH
Confidence 4554 4555666655543 23567999998 77777666 788899999873 11 23655443 11 23
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+.+..+...++ .+.| .-+++..
T Consensus 476 ~~n~~i~~~~r-~~~p---~~~IiaR 497 (601)
T PRK03659 476 EDTMKIVELCQ-QHFP---HLHILAR 497 (601)
T ss_pred HHHHHHHHHHH-HHCC---CCeEEEE
Confidence 44445555544 4667 6777764
No 424
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=40.22 E-value=26 Score=32.42 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=24.4
Q ss_pred ceEEecCCc--cHHHHHHHHHCCCCeEEEeeh
Q 044482 182 KLVDVASCL--GANMSLIVNTYPQITGINFDL 211 (345)
Q Consensus 182 ~vlDiGgG~--G~~~~~l~~~~p~~~~~~~Dl 211 (345)
+|+-||.|. |-...-++-++|+++++++|.
T Consensus 3 kiccigagyvggptcavia~kcp~i~vtvvd~ 34 (481)
T KOG2666|consen 3 KICCIGAGYVGGPTCAVIALKCPDIEVTVVDI 34 (481)
T ss_pred eEEEecCcccCCcchheeeecCCceEEEEEec
Confidence 577788773 556677888999999999998
No 425
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.62 E-value=75 Score=29.43 Aligned_cols=116 Identities=12% Similarity=0.049 Sum_probs=65.8
Q ss_pred eEEecCCccHHHHHHHHHCCCCeE-EEeeh-hhHhhhCC-C--ceEEeccCCc-C---CCCCCEEEeccccccCCh----
Q 044482 183 LVDVASCLGANMSLIVNTYPQITG-INFDL-PYVIKNAP-C--VEHVEGDMFV-N---VPSGQAIFTKSVLLNWSD---- 249 (345)
Q Consensus 183 vlDiGgG~G~~~~~l~~~~p~~~~-~~~Dl-p~~i~~a~-r--i~~~~gd~~~-~---~p~~D~i~~~~vlh~~~d---- 249 (345)
|+|+=||.|.+...+.++. .++ ...|. +..++.-+ + -.+..+|+.+ . +|+-|+++...-+..|+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~~ 78 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGKR 78 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecCCCcccchhccc
Confidence 6899999999999998764 444 45676 33333222 1 1445677765 2 333488877666655541
Q ss_pred ----hHHHHHHHH---HHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHC
Q 044482 250 ----EQCLKILKN---CYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAA 322 (345)
Q Consensus 250 ----~~~~~iL~~---~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~a 322 (345)
+..-.++.+ +.+.++| +++++ |.+..-- . ........++.+.|++.
T Consensus 79 ~~~~d~r~~L~~~~~r~i~~~~P-----~~~v~-ENV~~l~------------------~---~~~~~~~~~i~~~l~~~ 131 (315)
T TIGR00675 79 KGFEDTRGTLFFEIVRILKEKKP-----KFFLL-ENVKGLV------------------S---HDKGRTFKVIIETLEEL 131 (315)
T ss_pred CCCCCchhhHHHHHHHHHhhcCC-----CEEEe-eccHHHH------------------h---cccchHHHHHHHHHHhC
Confidence 122233333 3445577 68888 7653211 0 11113356677778888
Q ss_pred CCCce
Q 044482 323 GFGTI 327 (345)
Q Consensus 323 Gf~~~ 327 (345)
|+.+.
T Consensus 132 GY~v~ 136 (315)
T TIGR00675 132 GYKVY 136 (315)
T ss_pred CCEEE
Confidence 88653
No 426
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=39.45 E-value=87 Score=29.02 Aligned_cols=65 Identities=12% Similarity=0.202 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCC--CCeEEEeehhhHh
Q 044482 151 MLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP--QITGINFDLPYVI 215 (345)
Q Consensus 151 ~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p--~~~~~~~Dlp~~i 215 (345)
......+.+..........+.+.+..+....+|+=+|||.-.+..++.+.+| +-++++.|-|+..
T Consensus 244 ~~~~v~~~i~~~~~~l~~~i~~~~~~~~~~~~I~~vGGGA~ll~~~Ik~~~~~~~~~i~i~~~pqfA 310 (318)
T PF06406_consen 244 VIDDVSEVIEEAVEELINRILRELGDFSDIDRIFFVGGGAILLKDAIKEAFPVPNERIVIVDDPQFA 310 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS-S-SEEEEESTTHHHHHHHHHHHHT--GGGEE--SSGGGH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEECCcHHHHHHHHHHhhCCCCCcEEECCCchhh
Confidence 3344555555555455556666654466777899999999999999999977 5678888877653
No 427
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=38.31 E-value=14 Score=33.06 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=37.3
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE---eeecCCCcc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV---MYNLFPGAK 100 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~---~y~~t~~s~ 100 (345)
+.|+.|||+.+|+ +-..+..+|+.|...|+++...+ .|+.-+...
T Consensus 30 ~~tA~eis~~sgv-------P~~kvY~vl~sLe~kG~v~~~~g~P~~y~av~p~~ 77 (247)
T COG1378 30 EATAKEISEASGV-------PRPKVYDVLRSLEKKGLVEVIEGRPKKYRAVPPEE 77 (247)
T ss_pred CccHHHHHHHcCC-------CchhHHHHHHHHHHCCCEEeeCCCCceEEeCCHHH
Confidence 5899999999999 56789999999999999987643 677655444
No 428
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=37.55 E-value=54 Score=25.92 Aligned_cols=28 Identities=29% Similarity=0.239 Sum_probs=23.9
Q ss_pred CccCCHHHHHHHHHHCCCCceEEEecCC
Q 044482 307 AKGRTAGEFKALAMAAGFGTIKVICRSY 334 (345)
Q Consensus 307 ~~~rt~~e~~~ll~~aGf~~~~~~~~~~ 334 (345)
+.-++.++++.++++|||++++.+.-+.
T Consensus 93 S~Ky~~~~~~~l~~~aGl~~~~~w~d~~ 120 (127)
T PF10017_consen 93 SYKYSPEEFEALAEQAGLEVEKRWTDPK 120 (127)
T ss_pred eeCcCHHHHHHHHHHCCCeeEEEEECCC
Confidence 3457999999999999999999877654
No 429
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=37.27 E-value=2.9 Score=27.57 Aligned_cols=30 Identities=3% Similarity=-0.068 Sum_probs=24.1
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCc
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRN 84 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~g 84 (345)
.++|.++||+.+++ ...-+.+-+..|...|
T Consensus 14 ~~it~~eLa~~l~v-------S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 14 EPITAKELAEELGV-------SRRTIRRDIKELREWG 43 (55)
T ss_dssp TSBEHHHHHHHCTS--------HHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHhCC-------CHHHHHHHHHHHHHCC
Confidence 36999999999999 5677777777777777
No 430
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=36.79 E-value=14 Score=23.65 Aligned_cols=30 Identities=7% Similarity=-0.012 Sum_probs=17.7
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCce
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNI 85 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl 85 (345)
+.|..+||+.+|+ .+.-+.++++.....|+
T Consensus 17 G~s~~~ia~~lgv-------s~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 17 GWSIREIAKRLGV-------SRSTVYRWIKRYREEGL 46 (50)
T ss_dssp T--HHHHHHHHTS--------HHHHHHHHT-------
T ss_pred CCCHHHHHHHHCc-------CHHHHHHHHHHcccccc
Confidence 4799999999999 67888888877666553
No 431
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=35.69 E-value=9.3 Score=27.53 Aligned_cols=46 Identities=15% Similarity=-0.002 Sum_probs=36.1
Q ss_pred CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeE-Ee--EeeecCCCc
Q 044482 47 GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTI-DV--VMYNLFPGA 99 (345)
Q Consensus 47 g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~-~~--~~y~~t~~s 99 (345)
+.|+...+||+.++. ++.-++..|..|.++|+++. .. ..|..|..+
T Consensus 21 ~~PVgSk~ia~~l~~-------s~aTIRN~M~~Le~lGlve~~p~~s~GriPT~~a 69 (78)
T PF03444_consen 21 GEPVGSKTIAEELGR-------SPATIRNEMADLEELGLVESQPHPSGGRIPTDKA 69 (78)
T ss_pred CCCcCHHHHHHHHCC-------ChHHHHHHHHHHHHCCCccCCCCCCCCCCcCHHH
Confidence 458999999999998 68889999999999999974 32 255555443
No 432
>PF13730 HTH_36: Helix-turn-helix domain
Probab=35.64 E-value=7.5 Score=25.49 Aligned_cols=30 Identities=3% Similarity=0.039 Sum_probs=25.8
Q ss_pred hhHHHHHHHcCCCcccCCCccccccccCCCCccCcee
Q 044482 50 VNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNIS 86 (345)
Q Consensus 50 ~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~ 86 (345)
.|.+.||+.+|+ ...-+.+.++.|...|++
T Consensus 26 pS~~~la~~~g~-------s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 26 PSQETLAKDLGV-------SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred cCHHHHHHHHCc-------CHHHHHHHHHHHHHCcCC
Confidence 489999999999 578888999999888874
No 433
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=35.43 E-value=3e+02 Score=26.37 Aligned_cols=88 Identities=11% Similarity=0.030 Sum_probs=56.5
Q ss_pred ceEEecCCccHHHHHHHHHCCCCeEEEeeh--hh--HhhhCC--Cce---EEeccCCcCCCCC-CEEEeccccccCChhH
Q 044482 182 KLVDVASCLGANMSLIVNTYPQITGINFDL--PY--VIKNAP--CVE---HVEGDMFVNVPSG-QAIFTKSVLLNWSDEQ 251 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl--p~--~i~~a~--ri~---~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~ 251 (345)
+|+=|+=..|.++..++...|. ...|. .+ ...+++ ++. +...+..+++|.+ |+|++..-= +.+.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~---~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~d~vl~~~PK---~~~~ 120 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY---SIGDSYISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIKVPK---TLAL 120 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC---eeehHHHHHHHHHHHHHHcCCCcccceeecccccccCCCCEEEEEeCC---CHHH
Confidence 7999999999999999976663 33564 11 122222 221 2223334466665 888776321 2345
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 252 CLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 252 ~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
....|..+++.|+| |+.|++. +..
T Consensus 121 l~~~l~~l~~~l~~---~~~ii~g-~~~ 144 (378)
T PRK15001 121 LEQQLRALRKVVTS---DTRIIAG-AKA 144 (378)
T ss_pred HHHHHHHHHhhCCC---CCEEEEE-Eec
Confidence 67789999999999 9998776 543
No 434
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=35.07 E-value=4.6 Score=30.17 Aligned_cols=45 Identities=9% Similarity=-0.096 Sum_probs=36.3
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV 91 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~ 91 (345)
|..+|... | +-.+.-||.+++. +.+.+..+|+-|..+|++++..+
T Consensus 12 IL~hl~~~-~-~Dy~k~ia~~l~~-------~~~~v~~~l~~Le~~GLler~~g 56 (92)
T PF10007_consen 12 ILQHLKKA-G-PDYAKSIARRLKI-------PLEEVREALEKLEEMGLLERVEG 56 (92)
T ss_pred HHHHHHHH-C-CCcHHHHHHHHCC-------CHHHHHHHHHHHHHCCCeEEecC
Confidence 55566333 2 4578899999999 78899999999999999998765
No 435
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.88 E-value=3.2e+02 Score=24.14 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=46.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCC--CeEEEee--hhhHhhhCC--CceEEeccCCcCCCCCCEEEeccccccCChhHH
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQ--ITGINFD--LPYVIKNAP--CVEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQC 252 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~--~~~~~~D--lp~~i~~a~--ri~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~ 252 (345)
....||-.||..|..+-++++++-+ .+++..- +..|...+. ++....-|.. +++++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~------------------~~~~V 67 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVS------------------KPEEV 67 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccC------------------ChHHH
Confidence 4568999999999999999998754 2332222 233333332 4444444432 45677
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 253 LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 253 ~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+++.+++.. | .|+|=+.
T Consensus 68 ~~v~~evr~~--~---~Gkld~L 85 (289)
T KOG1209|consen 68 VTVSGEVRAN--P---DGKLDLL 85 (289)
T ss_pred HHHHHHHhhC--C---CCceEEE
Confidence 8889988876 6 6766443
No 436
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=34.69 E-value=1e+02 Score=25.52 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=41.9
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 253 LKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 253 ~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
.+++.-+++.|.| ||.+++- .+.+... . ..+ .-|.......+--.|-++||+..+-+..
T Consensus 73 ~~l~~~l~~~lsp---g~~lfVe--Yv~DrET----------~-----~~l-qkG~~p~atrLGfeL~k~GftwfkdWY~ 131 (192)
T COG4353 73 VKLYKVLYNFLSP---GGKLFVE--YVRDRET----------R-----YRL-QKGKPPVATRLGFELLKAGFTWFKDWYF 131 (192)
T ss_pred HHHHHHHHHhcCC---CCceEEE--EEechhH----------H-----HHH-HcCCCCccchhhHHHHhCcceeeeeeec
Confidence 6889999999999 9988765 4432210 0 012 1456566666777889999999988777
Q ss_pred C
Q 044482 333 S 333 (345)
Q Consensus 333 ~ 333 (345)
|
T Consensus 132 P 132 (192)
T COG4353 132 P 132 (192)
T ss_pred c
Confidence 5
No 437
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=34.30 E-value=1.5e+02 Score=27.38 Aligned_cols=92 Identities=16% Similarity=0.122 Sum_probs=50.7
Q ss_pred eEEecCCc-cHHHHHHHHHCCCC-eEEEeehh-hH-----hh--hCC------CceEEeccCCcCCCCCCEEEecccccc
Q 044482 183 LVDVASCL-GANMSLIVNTYPQI-TGINFDLP-YV-----IK--NAP------CVEHVEGDMFVNVPSGQAIFTKSVLLN 246 (345)
Q Consensus 183 vlDiGgG~-G~~~~~l~~~~p~~-~~~~~Dlp-~~-----i~--~a~------ri~~~~gd~~~~~p~~D~i~~~~vlh~ 246 (345)
|.=||+|. |......+-..+-. +.+++|.. +. .+ .+. ++++..+|+ +.+.++|+|++..-.--
T Consensus 2 i~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y-~~~~~aDivvitaG~~~ 80 (307)
T cd05290 2 LVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDY-DDCADADIIVITAGPSI 80 (307)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCH-HHhCCCCEEEECCCCCC
Confidence 45578766 66554444333332 58888872 21 11 111 234444552 34445598887655422
Q ss_pred ---CCh------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 247 ---WSD------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 247 ---~~d------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
-+. ....+|++++...++...+.|.++++
T Consensus 81 kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivv 118 (307)
T cd05290 81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILI 118 (307)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 221 24567888888888753347887777
No 438
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=33.92 E-value=1.4e+02 Score=27.90 Aligned_cols=88 Identities=10% Similarity=0.026 Sum_probs=55.9
Q ss_pred ccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCCc---CCCCCCEEEeccccccCCh
Q 044482 180 LKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMFV---NVPSGQAIFTKSVLLNWSD 249 (345)
Q Consensus 180 ~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~---~~p~~D~i~~~~vlh~~~d 249 (345)
..+|+=||||. |..+..++--- +..++++|+ ..-+.+.. |+...-.+... ..+++|+++-.=.+---..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 36788889885 66777776543 568999998 45555544 66666555443 3445688765543322222
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEE
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQ 273 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~ll 273 (345)
+ .-+.++..+.||| |+.|+
T Consensus 247 P--kLvt~e~vk~Mkp---GsViv 265 (371)
T COG0686 247 P--KLVTREMVKQMKP---GSVIV 265 (371)
T ss_pred c--eehhHHHHHhcCC---CcEEE
Confidence 2 3467888999999 77543
No 439
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=33.87 E-value=18 Score=25.73 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=25.9
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCcee
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNIS 86 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~ 86 (345)
+.|..|||+.+++ .+..+...+..+...|.+
T Consensus 32 GlS~kEIAe~LGI-------S~~TVk~~l~~~~~~~~~ 62 (73)
T TIGR03879 32 GKTASEIAEELGR-------TEQTVRNHLKGETKAGGL 62 (73)
T ss_pred CCCHHHHHHHHCc-------CHHHHHHHHhcCcccchH
Confidence 4899999999999 578888888887777765
No 440
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=33.63 E-value=1.1e+02 Score=30.58 Aligned_cols=89 Identities=15% Similarity=0.074 Sum_probs=54.6
Q ss_pred ccceEEecCCcc-HHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCc--------------C--------CC
Q 044482 180 LKKLVDVASCLG-ANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFV--------------N--------VP 233 (345)
Q Consensus 180 ~~~vlDiGgG~G-~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~--------------~--------~p 233 (345)
..+++=+|+|.= ..+..+++.. +..++++|. +..++.++ ..+++.-|..+ + ++
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 478999987764 6666667665 457889998 66676665 44443333211 0 22
Q ss_pred ----CCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEE
Q 044482 234 ----SGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQL 274 (345)
Q Consensus 234 ----~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli 274 (345)
+.|+++..-.+.--+.+ .-+.++..+.||| |+.|+-
T Consensus 243 e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKp---GsvIVD 282 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKA---GSVIVD 282 (511)
T ss_pred HHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCC---CCEEEE
Confidence 23888655444322222 2467888899999 886553
No 441
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=33.62 E-value=1.6e+02 Score=27.35 Aligned_cols=96 Identities=15% Similarity=0.079 Sum_probs=53.0
Q ss_pred cccceEEecCCc-cHHHHHHHHHCCCC-eEEEeehhh-Hh-------hhCC----CceEEeccCCcCCCCCCEEEecccc
Q 044482 179 ELKKLVDVASCL-GANMSLIVNTYPQI-TGINFDLPY-VI-------KNAP----CVEHVEGDMFVNVPSGQAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~-G~~~~~l~~~~p~~-~~~~~Dlp~-~i-------~~a~----ri~~~~gd~~~~~p~~D~i~~~~vl 244 (345)
...+|.=||+|. |......+...+-. +.+++|..+ .+ ..+. ++....+|+ +.+.++|+|++..-.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag~ 83 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAGA 83 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence 346888899877 66555555555443 688999722 11 1111 334443432 344455888875444
Q ss_pred ccCC---hh----HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 245 LNWS---DE----QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 245 h~~~---d~----~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
-.-+ .. ....+++++...++...+.++++++
T Consensus 84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivv 121 (315)
T PRK00066 84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVA 121 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 2211 11 2456777777666532228888887
No 442
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=33.58 E-value=93 Score=31.36 Aligned_cols=79 Identities=10% Similarity=0.040 Sum_probs=47.5
Q ss_pred CCccHHHHHHHHHC--CCCeEEEeeh-hhHhhhCC--CceEEeccCCcC--CC-----CCCEEEeccccccC-ChhHHHH
Q 044482 188 SCLGANMSLIVNTY--PQITGINFDL-PYVIKNAP--CVEHVEGDMFVN--VP-----SGQAIFTKSVLLNW-SDEQCLK 254 (345)
Q Consensus 188 gG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~~--~p-----~~D~i~~~~vlh~~-~d~~~~~ 254 (345)
||.|.++..+++.. .+.+++++|. ++.++.++ .++.+.||..++ +. ++|.++.. . +|++...
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~-----~~~~~~~~~ 497 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLT-----IPNGYEAGE 497 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEE-----cCChHHHHH
Confidence 56666766666643 2457899998 66666666 788999999873 11 22644332 2 2333334
Q ss_pred HHHHHHhhCCCCCCCcEEEEE
Q 044482 255 ILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 255 iL~~~~~aL~p~~~gG~lli~ 275 (345)
+...+ +.+.| .-+++..
T Consensus 498 iv~~~-~~~~~---~~~iiar 514 (558)
T PRK10669 498 IVASA-REKRP---DIEIIAR 514 (558)
T ss_pred HHHHH-HHHCC---CCeEEEE
Confidence 44444 55567 6666655
No 443
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=33.56 E-value=1e+02 Score=22.22 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=20.8
Q ss_pred cccccceEEecCCccH-HHHHHHHHC-CCCeEEEee
Q 044482 177 FKELKKLVDVASCLGA-NMSLIVNTY-PQITGINFD 210 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~-~~~~l~~~~-p~~~~~~~D 210 (345)
...+++||=|||.+|. ++.+++..| -+...+++.
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~ 71 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVS 71 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEe
Confidence 5667899999999998 666677775 234444443
No 444
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=33.27 E-value=72 Score=32.73 Aligned_cols=86 Identities=10% Similarity=0.071 Sum_probs=49.6
Q ss_pred cceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCcC--CC-----CCCEEEeccccccCCh
Q 044482 181 KKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFVN--VP-----SGQAIFTKSVLLNWSD 249 (345)
Q Consensus 181 ~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~~--~p-----~~D~i~~~~vlh~~~d 249 (345)
.+|+=+|||. |......+++. +.+++++|. |+.++.++ +...+.||..++ +. ++|++++.- =+|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~----~d~ 475 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAI----DDP 475 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe----CCH
Confidence 4566666553 33333333332 567899998 77777666 788899998873 11 236655442 133
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+.+..+...+ +.+.| +-+++..
T Consensus 476 ~~n~~i~~~a-r~~~p---~~~iiaR 497 (621)
T PRK03562 476 QTSLQLVELV-KEHFP---HLQIIAR 497 (621)
T ss_pred HHHHHHHHHH-HHhCC---CCeEEEE
Confidence 4444555544 44567 6666654
No 445
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=33.04 E-value=11 Score=34.18 Aligned_cols=46 Identities=7% Similarity=-0.030 Sum_probs=35.9
Q ss_pred hHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-eeecCCCccc
Q 044482 51 NMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-MYNLFPGAKE 101 (345)
Q Consensus 51 t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-~y~~t~~s~~ 101 (345)
+.++||++++- .| ...-++..|+.|..+|+++++++ .|..|.-+-.
T Consensus 139 ~~~~ia~~l~p--~i---s~~ev~~sL~~L~~~glikk~~~g~y~~t~~~l~ 185 (271)
T TIGR02147 139 DPEELAKRCFP--KI---SAEQVKESLDLLERLGLIKKNEDGFYKQTDKAVS 185 (271)
T ss_pred CHHHHHHHhCC--CC---CHHHHHHHHHHHHHCCCeeECCCCcEEeecceee
Confidence 78899999984 00 35678899999999999999765 6888876543
No 446
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=32.60 E-value=18 Score=31.52 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=36.6
Q ss_pred CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-eeecCCCcc
Q 044482 47 GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-MYNLFPGAK 100 (345)
Q Consensus 47 g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-~y~~t~~s~ 100 (345)
|..++..+||+++|++ ...++..|+.|.+.|+++.... ++...+.+.
T Consensus 28 G~~L~e~eLae~lgVS-------RtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~ 75 (224)
T PRK11534 28 DEKLRMSLLTSRYALG-------VGPLREALSQLVAERLVTVVNQKGYRVASMSE 75 (224)
T ss_pred CCcCCHHHHHHHHCCC-------hHHHHHHHHHHHHCCCEEEeCCCceEeCCCCH
Confidence 3467889999999993 4679999999999999986644 565555553
No 447
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=32.50 E-value=1.3e+02 Score=28.57 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=25.7
Q ss_pred cccccceEEecCCccHHHHHHHHH-CCCC---eEEEeeh
Q 044482 177 FKELKKLVDVASCLGANMSLIVNT-YPQI---TGINFDL 211 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~-~p~~---~~~~~Dl 211 (345)
.+...+|||.....|.-+.++++. ++.. .++.=|.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~ 191 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDV 191 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEeccc
Confidence 567789999999999988888876 4332 3455554
No 448
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=32.42 E-value=73 Score=30.47 Aligned_cols=41 Identities=15% Similarity=0.329 Sum_probs=29.8
Q ss_pred HHHHHHhccCcccccceEEecCCcc-----HHHHHHHHHCCCCeEE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLG-----ANMSLIVNTYPQITGI 207 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G-----~~~~~l~~~~p~~~~~ 207 (345)
.+..++..|.+.+.--+-.+|||+| .++..+.+.||+....
T Consensus 89 ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~ 134 (379)
T cd02190 89 IRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRF 134 (379)
T ss_pred HHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccceE
Confidence 3456677776667788999999998 4666677789876443
No 449
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=31.91 E-value=2.1e+02 Score=26.61 Aligned_cols=91 Identities=11% Similarity=0.049 Sum_probs=57.0
Q ss_pred cccccceEEec--CCccHHHHHHHHHCCCCeEEEeehhhHhhhCC------CceEEeccCCcCC----C-CC-CEEEecc
Q 044482 177 FKELKKLVDVA--SCLGANMSLIVNTYPQITGINFDLPYVIKNAP------CVEHVEGDMFVNV----P-SG-QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiG--gG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~------ri~~~~gd~~~~~----p-~~-D~i~~~~ 242 (345)
+....+||=.| ||-|.++.+|+++.-...++....++-.+.++ -+.+...|+-+.. . .+ |+|+-.-
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 66678888888 77888999999998643333333343333332 2444555544422 1 24 8776431
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
. ...+.+..++|++ +|+++.+ -...
T Consensus 220 -----G----~~~~~~~l~~l~~---~G~lv~i-g~~~ 244 (326)
T COG0604 220 -----G----GDTFAASLAALAP---GGRLVSI-GALS 244 (326)
T ss_pred -----C----HHHHHHHHHHhcc---CCEEEEE-ecCC
Confidence 1 2457778889999 9999998 5543
No 450
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=31.88 E-value=6.5 Score=32.25 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=37.5
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID 89 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~ 89 (345)
.+.. |.+.|..+ | ..|..+||+++|+ .+..+.+=++.|...|++...
T Consensus 10 ~D~~-Il~~Lq~d-~-R~s~~eiA~~lgl-------S~~tV~~Ri~rL~~~GvI~~~ 56 (153)
T PRK11179 10 LDRG-ILEALMEN-A-RTPYAELAKQFGV-------SPGTIHVRVEKMKQAGIITGT 56 (153)
T ss_pred HHHH-HHHHHHHc-C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeeeE
Confidence 4566 77788444 4 4899999999999 577788888899999999854
No 451
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=31.81 E-value=8.3 Score=32.04 Aligned_cols=48 Identities=6% Similarity=-0.038 Sum_probs=38.3
Q ss_pred hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeE
Q 044482 31 TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTI 88 (345)
Q Consensus 31 ~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~ 88 (345)
..++.. |...|..+ | ..|..+||+++|+ .+..+.+=++-|...|+++.
T Consensus 13 D~~D~~-IL~~Lq~d-~-R~s~~eiA~~lgl-------S~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 13 DRIDRN-ILNELQKD-G-RISNVELSKRVGL-------SPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHH-HHHHhccC-C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeEE
Confidence 345777 88888554 3 4899999999999 56777788888999999875
No 452
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=31.76 E-value=1.1e+02 Score=28.13 Aligned_cols=89 Identities=11% Similarity=0.078 Sum_probs=45.0
Q ss_pred ecCCc-cHHHHHHHHHCCCC-eEEEeehhhHhh--------hCC-----CceEEeccCCcCCCCCCEEEeccccccCCh-
Q 044482 186 VASCL-GANMSLIVNTYPQI-TGINFDLPYVIK--------NAP-----CVEHVEGDMFVNVPSGQAIFTKSVLLNWSD- 249 (345)
Q Consensus 186 iGgG~-G~~~~~l~~~~p~~-~~~~~Dlp~~i~--------~a~-----ri~~~~gd~~~~~p~~D~i~~~~vlh~~~d- 249 (345)
||+|. |......+...+-. +.+++|..+-.. .+. ++++..+| .+.+.++|+|++..-.---+.
T Consensus 2 IGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 2 IGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGD-YSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCC-HHHHCCCCEEEECCCCCCCCCC
Confidence 56655 66555555444333 578888722111 111 34444333 234445598888654422121
Q ss_pred --h----HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 250 --E----QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 250 --~----~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. ....+++++.+.++...+.|.++++
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivv 112 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVA 112 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 1 2345666665555432228888888
No 453
>PF08820 DUF1803: Domain of unknown function (DUF1803); InterPro: IPR014924 This small protein is found in one or two copies in bacteria. The function of this is unknown.
Probab=31.51 E-value=17 Score=27.19 Aligned_cols=40 Identities=8% Similarity=0.077 Sum_probs=33.0
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecC
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLF 96 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t 96 (345)
..++.+|-+.... ...+.++++.++..|++.+++.+|.++
T Consensus 28 ~~lLR~iKk~f~~--------qk~~D~fie~li~~GYI~re~krY~L~ 67 (93)
T PF08820_consen 28 DFLLRFIKKDFPK--------QKRLDIFIEALIKLGYIEREEKRYYLN 67 (93)
T ss_pred HhhHHHHHHhhcc--------ccchhHHHHHHHHcCCeEecCCEEEEe
Confidence 4678888777765 467899999999999999977788875
No 454
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=31.48 E-value=11 Score=32.64 Aligned_cols=44 Identities=9% Similarity=0.014 Sum_probs=33.6
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID 89 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~ 89 (345)
|.+.+. ..+.+.|++|+|+++|.+ ---.+|-|.+|++.|++..+
T Consensus 163 i~~~~~-~~~~~~Taeela~~~giS-------RvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 163 VREALK-EPDQELTAEELAQALGIS-------RVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred HHHHHh-CcCCccCHHHHHHHhCcc-------HHHHHHHHHHHHhcCeeeEE
Confidence 334453 234579999999999994 45688999999999999754
No 455
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=31.43 E-value=34 Score=23.05 Aligned_cols=14 Identities=21% Similarity=0.076 Sum_probs=10.6
Q ss_pred HHHHHHCCCCceEE
Q 044482 316 KALAMAAGFGTIKV 329 (345)
Q Consensus 316 ~~ll~~aGf~~~~~ 329 (345)
-+||++|||.+-+-
T Consensus 30 G~WL~~aGF~~G~~ 43 (57)
T PF08845_consen 30 GKWLEEAGFTIGDP 43 (57)
T ss_pred hhhhHHhCCCCCCE
Confidence 47899999976443
No 456
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=31.35 E-value=12 Score=29.22 Aligned_cols=36 Identities=6% Similarity=-0.104 Sum_probs=32.5
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
.++|++|||+.+.+ .++.+..+|+-|...|.++-..
T Consensus 18 ~~vtl~elA~~l~c-------S~Rn~r~lLkkm~~~gWi~W~p 53 (115)
T PF12793_consen 18 VEVTLDELAELLFC-------SRRNARTLLKKMQEEGWITWQP 53 (115)
T ss_pred cceeHHHHHHHhCC-------CHHHHHHHHHHHHHCCCeeeeC
Confidence 35799999999999 5899999999999999998754
No 457
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=31.31 E-value=2.5e+02 Score=27.25 Aligned_cols=95 Identities=14% Similarity=0.052 Sum_probs=56.2
Q ss_pred HHHHHHhccCcccccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCcCCCCCCEEEecc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFVNVPSGQAIFTKS 242 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~~~p~~D~i~~~~ 242 (345)
...+.+..+..-...+|+=+|+|. |......++.+ +.++++.|. |.-.+.|. ....+ +..+.....|+++...
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~G~~~~--~~~e~v~~aDVVI~at 265 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAMEGYEVM--TMEEAVKEGDIFVTTT 265 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhcCCEEc--cHHHHHcCCCEEEECC
Confidence 345555444123457899999886 55555555555 568999987 55555554 33222 2112222349887642
Q ss_pred ccccCChhHHHHHHHH-HHhhCCCCCCCcEEEEE
Q 044482 243 VLLNWSDEQCLKILKN-CYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~-~~~aL~p~~~gG~lli~ 275 (345)
.. ..++.. ..+.|++ ||.++.+
T Consensus 266 ------G~--~~~i~~~~l~~mk~---Ggilvnv 288 (413)
T cd00401 266 ------GN--KDIITGEHFEQMKD---GAIVCNI 288 (413)
T ss_pred ------CC--HHHHHHHHHhcCCC---CcEEEEe
Confidence 11 245655 4889999 9988877
No 458
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=31.25 E-value=14 Score=28.25 Aligned_cols=60 Identities=8% Similarity=0.051 Sum_probs=43.2
Q ss_pred hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 32 AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 32 a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
..++. +...|...+ +.+..+||+++++ .+..+.++++-|...|++.+..+ .+.+|+.++.
T Consensus 22 ~~q~~-~L~~l~~~~--~~~~~~la~~l~i-------~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~ 88 (126)
T COG1846 22 PPQYQ-VLLALYEAG--GITVKELAERLGL-------DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRE 88 (126)
T ss_pred HHHHH-HHHHHHHhC--CCcHHHHHHHHCC-------CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHH
Confidence 33444 454552322 2233999999999 78899999999999999977532 6778888776
No 459
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=31.08 E-value=83 Score=32.42 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=35.7
Q ss_pred HHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEE
Q 044482 159 MQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGI 207 (345)
Q Consensus 159 m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~ 207 (345)
++..++.-.+.|+..+. ..- +..|-.|=|+|..+..+++.||..+++
T Consensus 304 ~ATGAHYKlRsIL~~~~-i~~-~d~l~~GDGSGGita~lLR~~p~sr~i 350 (675)
T PF14314_consen 304 LATGAHYKLRSILKNLN-IKY-RDALCGGDGSGGITACLLRMNPTSRGI 350 (675)
T ss_pred ccccchhhHHHHHHhcC-CCc-ceeEEEecCchHHHHHHHHhCccccee
Confidence 34445555678888876 332 456888999999999999999998873
No 460
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=30.97 E-value=54 Score=32.06 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=26.2
Q ss_pred cceEEecCC-ccHHHH-HHHHHCCCCeEEEeehhh
Q 044482 181 KKLVDVASC-LGANMS-LIVNTYPQITGINFDLPY 213 (345)
Q Consensus 181 ~~vlDiGgG-~G~~~~-~l~~~~p~~~~~~~Dlp~ 213 (345)
..|+=||+| +|..+. .|+++.|+.+++++|-..
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 469999999 788776 466667899999999643
No 461
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=30.96 E-value=17 Score=28.57 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=39.2
Q ss_pred chhHHHHHHHcC-CCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 49 GVNMSLIVNTYS-QIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~-~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
+.-..||-+.++ + .+..|.+-|+.|...|++.+..- .|++|+.++.
T Consensus 36 ~~RF~eL~r~i~~I-------s~k~Ls~~Lk~Le~~Glv~R~~~~~~PprveY~LT~~G~~ 89 (120)
T COG1733 36 PKRFNELRRSIGGI-------SPKMLSRRLKELEEDGLVERVVYPEEPPRVEYRLTEKGRD 89 (120)
T ss_pred CCcHHHHHHHcccc-------CHHHHHHHHHHHHHCCCEEeeecCCCCceeEEEEhhhHHH
Confidence 578899999998 5 57889999999999999987642 8999999875
No 462
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=30.71 E-value=4.1e+02 Score=24.02 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=51.1
Q ss_pred cccccceEEecCC-ccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEecc---CC----cCCC-CC-CEEEeccc
Q 044482 177 FKELKKLVDVASC-LGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGD---MF----VNVP-SG-QAIFTKSV 243 (345)
Q Consensus 177 ~~~~~~vlDiGgG-~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd---~~----~~~p-~~-D~i~~~~v 243 (345)
+....+||..|+| .|..+..++++. +.++++.+. ++..+.++ .+..+..+ .. ...+ .+ |+++-..
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~- 240 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV- 240 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECC-
Confidence 5556788888865 488888888877 466777765 44444333 22221111 00 0112 23 7665321
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.. ...++++.+.|++ +|+++..
T Consensus 241 ----g~---~~~~~~~~~~l~~---~G~~v~~ 262 (338)
T cd08254 241 ----GT---QPTFEDAQKAVKP---GGRIVVV 262 (338)
T ss_pred ----CC---HHHHHHHHHHhhc---CCEEEEE
Confidence 11 2357888899999 9999888
No 463
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=30.21 E-value=1e+02 Score=25.14 Aligned_cols=85 Identities=7% Similarity=-0.074 Sum_probs=43.9
Q ss_pred eEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEE-----eccCCcCCCCCCEEEecccccc
Q 044482 183 LVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHV-----EGDMFVNVPSGQAIFTKSVLLN 246 (345)
Q Consensus 183 vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~-----~gd~~~~~p~~D~i~~~~vlh~ 246 (345)
|.=||+|.+..+.+..-..-+-++++... ++.++..+ .+++- .-|..+-+..+|+|++.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiia----- 76 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIA----- 76 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE------
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEec-----
Confidence 55678888776666444433457777776 34433222 11111 11221112234877765
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.|-.....+++++...+++ +-.+++.
T Consensus 77 vPs~~~~~~~~~l~~~l~~---~~~ii~~ 102 (157)
T PF01210_consen 77 VPSQAHREVLEQLAPYLKK---GQIIISA 102 (157)
T ss_dssp S-GGGHHHHHHHHTTTSHT---T-EEEET
T ss_pred ccHHHHHHHHHHHhhccCC---CCEEEEe
Confidence 2333346789999999977 5444444
No 464
>PRK12423 LexA repressor; Provisional
Probab=30.09 E-value=9.6 Score=32.89 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=31.2
Q ss_pred CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE
Q 044482 47 GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV 91 (345)
Q Consensus 47 g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~ 91 (345)
|-+-|..|||+++|+. .+..+..-|+.|...|+++...+
T Consensus 23 g~~Ps~~eia~~~g~~------s~~~v~~~l~~L~~~G~l~~~~~ 61 (202)
T PRK12423 23 GQPPSLAEIAQAFGFA------SRSVARKHVQALAEAGLIEVVPN 61 (202)
T ss_pred CCCCCHHHHHHHhCCC------ChHHHHHHHHHHHHCCCEEecCC
Confidence 3345999999999952 35678899999999999987543
No 465
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=29.38 E-value=11 Score=33.39 Aligned_cols=46 Identities=22% Similarity=0.080 Sum_probs=37.0
Q ss_pred cccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 37 ELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 37 ~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
+|++.|+.+.| -++..+||+++|+ .+..+++-++.|.+.|+++...
T Consensus 187 ~IL~~L~~~eg-rlse~eLAerlGV-------SRs~ireAlrkLE~aGvIe~r~ 232 (251)
T TIGR02787 187 HIFEELDGNEG-LLVASKIADRVGI-------TRSVIVNALRKLESAGVIESRS 232 (251)
T ss_pred HHHHHhccccc-cccHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEecc
Confidence 37888855223 4899999999999 5778999999999999997644
No 466
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=28.97 E-value=25 Score=22.13 Aligned_cols=23 Identities=9% Similarity=0.189 Sum_probs=14.8
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCC
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASS 78 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~ 78 (345)
|.|..+||+.+|+ ...-+.|+|+
T Consensus 21 G~si~~IA~~~gv-------sr~TvyR~l~ 43 (45)
T PF02796_consen 21 GMSIAEIAKQFGV-------SRSTVYRYLN 43 (45)
T ss_dssp T--HHHHHHHTTS--------HHHHHHHHC
T ss_pred CCCHHHHHHHHCc-------CHHHHHHHHh
Confidence 4899999999999 3445555543
No 467
>PRK08818 prephenate dehydrogenase; Provisional
Probab=28.94 E-value=2.1e+02 Score=27.30 Aligned_cols=70 Identities=9% Similarity=-0.099 Sum_probs=40.6
Q ss_pred cceEEecC-C--ccHHHHHHHHHCCCCeEEEeehhhHhhhCCCceEEeccCCcCCCCCCEEEeccccccCChhHHHHHHH
Q 044482 181 KKLVDVAS-C--LGANMSLIVNTYPQITGINFDLPYVIKNAPCVEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILK 257 (345)
Q Consensus 181 ~~vlDiGg-G--~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~ri~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~iL~ 257 (345)
.+|.=||+ | .|.++.+|.+.+ +.+++++|... . ...+..+...+.|+|++. .|-.....+|+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~d------~---~~~~~~~~v~~aDlVila-----vPv~~~~~~l~ 69 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPAD------P---GSLDPATLLQRADVLIFS-----APIRHTAALIE 69 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCCc------c---ccCCHHHHhcCCCEEEEe-----CCHHHHHHHHH
Confidence 46777776 4 244555555443 67889998510 0 000111112245988876 45566788899
Q ss_pred HHHhh---CCC
Q 044482 258 NCYDA---LPK 265 (345)
Q Consensus 258 ~~~~a---L~p 265 (345)
++... |+|
T Consensus 70 ~l~~~~~~l~~ 80 (370)
T PRK08818 70 EYVALAGGRAA 80 (370)
T ss_pred HHhhhhcCCCC
Confidence 88875 788
No 468
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=28.91 E-value=15 Score=31.22 Aligned_cols=55 Identities=16% Similarity=-0.022 Sum_probs=42.1
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
+.-.| ... +++|..+||+.+.. +...+-++++-|...|++.+... ...+|+.++.
T Consensus 50 iL~~L-~~~-~~itq~eLa~~l~l-------~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~ 111 (185)
T PRK13777 50 ILWIA-YHL-KGASISEIAKFGVM-------HVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEE 111 (185)
T ss_pred HHHHH-HhC-CCcCHHHHHHHHCC-------CHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHH
Confidence 44455 222 36899999999998 56778899999999999987531 6778888876
No 469
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=28.49 E-value=3.3e+02 Score=23.48 Aligned_cols=86 Identities=13% Similarity=0.086 Sum_probs=49.9
Q ss_pred ccccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--Cce-EEe---ccCCcC---C-CCC-CEEEecccc
Q 044482 178 KELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVE-HVE---GDMFVN---V-PSG-QAIFTKSVL 244 (345)
Q Consensus 178 ~~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~-~~~---gd~~~~---~-p~~-D~i~~~~vl 244 (345)
....+||..|+|. |..+..+++... .++++.+. ++..+.++ ... ++. .+..+. . ..+ |+++-.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~--- 208 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDA--- 208 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEEC---
Confidence 5567899999885 777778887764 67777776 33333322 111 111 011000 0 123 777632
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.... ..+..+.+.|++ +|+++.+
T Consensus 209 --~~~~---~~~~~~~~~l~~---~G~~v~~ 231 (271)
T cd05188 209 --VGGP---ETLAQALRLLRP---GGRIVVV 231 (271)
T ss_pred --CCCH---HHHHHHHHhccc---CCEEEEE
Confidence 1221 346777888999 9999988
No 470
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=28.43 E-value=2.1e+02 Score=26.89 Aligned_cols=58 Identities=9% Similarity=0.081 Sum_probs=38.6
Q ss_pred HHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhH
Q 044482 155 FNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYV 214 (345)
Q Consensus 155 f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~ 214 (345)
+.+............+...+....+..+|+=+|||.-.+-..|.+.+|+. .+.|-|..
T Consensus 267 ~~~~~~~~~~~i~~~i~~~~~~~~~~d~IiL~GGGA~ll~~~lk~~f~~~--~~~~~p~~ 324 (344)
T PRK13917 267 FYKEQDSVIDEVMSGFEIAVGNINSFDRVIVTGGGANIFFDSLSHWYSDV--EKADESQF 324 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCcHHHHHHHHHHHcCCe--EEcCChHH
Confidence 44444444444455555555445566789989999998888899999974 55565543
No 471
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=28.33 E-value=11 Score=28.53 Aligned_cols=42 Identities=10% Similarity=0.069 Sum_probs=31.9
Q ss_pred ccceeec--cCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCcee
Q 044482 38 LNELVDV--AGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNIS 86 (345)
Q Consensus 38 lfd~L~~--~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~ 86 (345)
|+++|.. ....|+++.+|+++++. ...-++..++.|+..|++
T Consensus 52 Vl~~i~~~~~~~~Gv~v~~I~~~l~~-------~~~~v~~al~~L~~eG~I 95 (102)
T PF08784_consen 52 VLNFIKQQPNSEEGVHVDEIAQQLGM-------SENEVRKALDFLSNEGHI 95 (102)
T ss_dssp HHHHHHC----TTTEEHHHHHHHSTS--------HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHhcCCCCCcccHHHHHHHhCc-------CHHHHHHHHHHHHhCCeE
Confidence 5666622 12357999999999988 678899999999999876
No 472
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=28.22 E-value=1.3e+02 Score=26.82 Aligned_cols=31 Identities=6% Similarity=-0.084 Sum_probs=27.0
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL 211 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl 211 (345)
..|+=||||...++.++.-+.++++++++|.
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk 56 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFER 56 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEec
Confidence 4688899999999888877778899999996
No 473
>PF09106 SelB-wing_2: Elongation factor SelB, winged helix ; InterPro: IPR015190 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 2". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2V9V_A 1LVA_A 2PLY_A 2UWM_A.
Probab=28.19 E-value=15 Score=24.66 Aligned_cols=39 Identities=8% Similarity=0.060 Sum_probs=30.9
Q ss_pred chhHHHHHHHc---CCCcccCCCccccccccCCCCccCceeeEEeEeee
Q 044482 49 GVNMSLIVNTY---SQIRGINFDLPHVIENASSSPVSRNISTIDVVMYN 94 (345)
Q Consensus 49 ~~t~~eLA~~~---~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~ 94 (345)
|++-++|-.++ +. ++.....+|+.|++.|.+..+++..+
T Consensus 17 G~~keeLrsrl~~~~l-------~~k~~~~ll~~l~~~g~l~~~g~~v~ 58 (59)
T PF09106_consen 17 GMPKEELRSRLFKPRL-------PPKLFNALLEALVAEGRLKVEGDWVR 58 (59)
T ss_dssp -EEHHHHHHHCST-TS--------HCCHHHHHHHHHHTTSEEEESSEEE
T ss_pred CcCHHHHHHHHhhccC-------CHHHHHHHHHHHHHCCCeeeECCEee
Confidence 58899999888 44 57888999999999999988776443
No 474
>PRK13699 putative methylase; Provisional
Probab=28.16 E-value=1.2e+02 Score=26.59 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=35.6
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP 219 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ 219 (345)
...+++.+. .....|||-=||+|+++.+..+. +-+++++|+ |+..+.+.
T Consensus 153 ~~~~i~~~s--~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~ 202 (227)
T PRK13699 153 LQPLIESFT--HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQ 202 (227)
T ss_pred HHHHHHHhC--CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHH
Confidence 344555433 24568999999999999887765 457899998 66666665
No 475
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=28.07 E-value=15 Score=31.85 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=35.1
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
|.+++ ..|..+.|.+|||+++++ .+.-+++-+..|+..|++..+-
T Consensus 167 Vl~~~-~~g~~g~s~~eIa~~l~i-------S~~Tv~~~~~~~~~~~~~~~~~ 211 (225)
T PRK10046 167 VRKLF-KEPGVQHTAETVAQALTI-------SRTTARRYLEYCASRHLIIAEI 211 (225)
T ss_pred HHHHH-HcCCCCcCHHHHHHHhCc-------cHHHHHHHHHHHHhCCeEEEEe
Confidence 45556 443335899999999999 5777888889999999998754
No 476
>PRK09273 hypothetical protein; Provisional
Probab=28.03 E-value=47 Score=28.85 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=25.9
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeE-EEeehhhHhh
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITG-INFDLPYVIK 216 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~-~~~Dlp~~i~ 216 (345)
....=++||||.=..-.+.++|++++ .+.| |....
T Consensus 64 ~d~GIliCGTGiG~siAANK~pGIraalc~d-~~sA~ 99 (211)
T PRK09273 64 VDFVVTGCGTGQGAMLALNSFPGVVCGYCID-PTDAY 99 (211)
T ss_pred CCEEEEEcCcHHHHHHHHhcCCCeEEEEeCC-HHHHH
Confidence 34555789999999999999999986 5555 44333
No 477
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=27.96 E-value=21 Score=30.66 Aligned_cols=47 Identities=11% Similarity=-0.099 Sum_probs=36.5
Q ss_pred CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-eeecCCCcc
Q 044482 47 GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-MYNLFPGAK 100 (345)
Q Consensus 47 g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-~y~~t~~s~ 100 (345)
|..++-.+||+++|+ ....++..|+.|.+.|+++...+ ++..++.+.
T Consensus 32 G~~L~e~~La~~lgV-------SRtpVReAL~~L~~eGlv~~~~~~G~~V~~~~~ 79 (212)
T TIGR03338 32 GAKLNESDIAARLGV-------SRGPVREAFRALEEAGLVRNEKNRGVFVREISL 79 (212)
T ss_pred CCEecHHHHHHHhCC-------ChHHHHHHHHHHHHCCCEEEecCCCeEEecCCH
Confidence 346788899999999 45679999999999999977644 555555543
No 478
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=27.79 E-value=3.3e+02 Score=25.57 Aligned_cols=95 Identities=7% Similarity=-0.029 Sum_probs=54.7
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhH--hhhCC--CceEEeccCCcCCCCC-CEEEeccc
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYV--IKNAP--CVEHVEGDMFVNVPSG-QAIFTKSV 243 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~--i~~a~--ri~~~~gd~~~~~p~~-D~i~~~~v 243 (345)
-+++..+ .-..++||=+|.-...+...|. ....++...+.... ..... ++.| ..++..+.+.. |.+++.
T Consensus 10 ~~~r~~~-~~~~~~~l~~~~~~d~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~~~~~~~d~~~~~-- 83 (342)
T PRK09489 10 VLLRHSD-DFEQRRVLFAGDLQDDLPAQLD--AASVRVHTQQFHHWQVLSRQMGDNARF-SLVATAEDVADCDTLIYY-- 83 (342)
T ss_pred HHHhhHH-HhCCCcEEEEcCcchhhHHhhh--ccceEEehhhhHHHHHHHhhcCCceEe-ccccCCccCCCCCEEEEE--
Confidence 4445554 3334678888888888887775 22334444333222 22111 2222 12222232333 776654
Q ss_pred cccCCh--hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 244 LLNWSD--EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 244 lh~~~d--~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
||. +++.-.|.++.+.|+| ||.|+++
T Consensus 84 ---~pk~k~~~~~~l~~~~~~l~~---g~~i~~~ 111 (342)
T PRK09489 84 ---WPKNKQEAQFQLMNLLSLLPV---GTDIFVV 111 (342)
T ss_pred ---CCCCHHHHHHHHHHHHHhCCC---CCEEEEE
Confidence 553 4667899999999999 9999998
No 479
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.40 E-value=8.2 Score=30.43 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=39.2
Q ss_pred hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 31 TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 31 ~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
..+... |.+++ ...| .+|..+++..+|+ .-..+.+.++.|++.|-+-..+
T Consensus 11 ~eLk~r-IvElV-Re~G-RiTi~ql~~~TGa-------sR~Tvk~~lreLVa~G~l~~~G 60 (127)
T PF06163_consen 11 EELKAR-IVELV-REHG-RITIKQLVAKTGA-------SRNTVKRYLRELVARGDLYRHG 60 (127)
T ss_pred HHHHHH-HHHHH-HHcC-CccHHHHHHHHCC-------CHHHHHHHHHHHHHcCCeEeCC
Confidence 345556 77788 4435 4899999999999 5678999999999999887643
No 480
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=27.36 E-value=26 Score=27.31 Aligned_cols=36 Identities=8% Similarity=0.034 Sum_probs=30.9
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV 91 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~ 91 (345)
+.|++|||+.+++ ....++.++.-|+..|++....+
T Consensus 55 ~~SVAEiAA~L~l-------PlgVvrVLvsDL~~~G~v~v~~p 90 (114)
T PF05331_consen 55 PLSVAEIAARLGL-------PLGVVRVLVSDLADAGLVRVRAP 90 (114)
T ss_pred CccHHHHHHhhCC-------CchhhhhhHHHHHhCCCEEEeCC
Confidence 7999999999999 56778888899999999987543
No 481
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=27.36 E-value=1.1e+02 Score=25.87 Aligned_cols=95 Identities=6% Similarity=-0.072 Sum_probs=45.5
Q ss_pred eEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------------CceEEeccCCcC-CCCCCEEEe
Q 044482 183 LVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------------CVEHVEGDMFVN-VPSGQAIFT 240 (345)
Q Consensus 183 vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------------ri~~~~gd~~~~-~p~~D~i~~ 240 (345)
|.=+|.|.=.+..+++-+.-+.+++++|. ++.++..+ .-++...+-.+. ..+.|+|++
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~I 82 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVFI 82 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEEE
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEEE
Confidence 34456554333333332333568999999 66555332 012222211111 223487766
Q ss_pred ccc--ccc---CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 241 KSV--LLN---WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 241 ~~v--lh~---~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
.=- ... .+-.-....++.+.+.+++ |.++|+ +...+.
T Consensus 83 ~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~----~~lvV~-~STvpp 124 (185)
T PF03721_consen 83 CVPTPSDEDGSPDLSYVESAIESIAPVLRP----GDLVVI-ESTVPP 124 (185)
T ss_dssp ----EBETTTSBETHHHHHHHHHHHHHHCS----CEEEEE-SSSSST
T ss_pred ecCCCccccCCccHHHHHHHHHHHHHHHhh----cceEEE-ccEEEE
Confidence 421 111 1112356789999999998 578888 655543
No 482
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=27.15 E-value=21 Score=30.51 Aligned_cols=39 Identities=3% Similarity=-0.120 Sum_probs=33.6
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeee
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYN 94 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~ 94 (345)
+.|-.+||..+|+ .+..+.|+|+.|...|+++..+..+.
T Consensus 168 ~~t~~~lA~~lG~-------tr~tvsR~l~~l~~~gii~~~~~~i~ 206 (211)
T PRK11753 168 KITRQEIGRIVGC-------SREMVGRVLKMLEDQGLISAHGKTIV 206 (211)
T ss_pred CCCHHHHHHHhCC-------CHHHHHHHHHHHHHCCCEEecCCEEE
Confidence 5788999999999 68899999999999999987765443
No 483
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=27.14 E-value=68 Score=31.50 Aligned_cols=88 Identities=10% Similarity=-0.028 Sum_probs=47.2
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEE------Eeeh-hhHhhhCCCceEEeccCCcCCCCCCEEEeccccccCChhHH
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGI------NFDL-PYVIKNAPCVEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQC 252 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~------~~Dl-p~~i~~a~ri~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~ 252 (345)
..+|+=||||+=..+.++--+--++.++ ++|. ...-+.|+.--|..++..+-.+.+|+|++- .||...
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviL-----lPDt~q 110 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINL-----TPDKQH 110 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEc-----CChHHH
Confidence 4789999998644433322222222233 1221 111222210112223322234566988764 566666
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 253 LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 253 ~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..+.+++...||| |..|...
T Consensus 111 ~~v~~~i~p~LK~---Ga~L~fs 130 (487)
T PRK05225 111 SDVVRAVQPLMKQ---GAALGYS 130 (487)
T ss_pred HHHHHHHHhhCCC---CCEEEec
Confidence 6778999999999 8877766
No 484
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=26.93 E-value=18 Score=26.67 Aligned_cols=35 Identities=11% Similarity=0.018 Sum_probs=30.7
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID 89 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~ 89 (345)
+-+|...||+++++ .-...+++||-|...|++...
T Consensus 40 K~ITps~lserlkI-------~~SlAr~~Lr~L~~kG~Ik~V 74 (86)
T PRK09334 40 KIVTPYTLASKYGI-------KISVAKKVLRELEKRGVLVLY 74 (86)
T ss_pred cEEcHHHHHHHhcc-------hHHHHHHHHHHHHHCCCEEEE
Confidence 35799999999999 678999999999999998654
No 485
>PF05491 RuvB_C: Holliday junction DNA helicase ruvB C-terminus; InterPro: IPR008823 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the C-terminal region of the proteins; it is thought to be a helicase DNA-binding domain.; GO: 0003677 DNA binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3PFI_B 1IXR_C 1HQC_B 1IXS_B 1IN8_A 1IN4_A 1IN5_A 1J7K_A 1IN6_A 1IN7_A.
Probab=26.79 E-value=23 Score=25.34 Aligned_cols=35 Identities=9% Similarity=0.034 Sum_probs=25.8
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccC-CCCccCceeeEE
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENAS-SSPVSRNISTID 89 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL-~~L~~~gl~~~~ 89 (345)
.|+.++.||..++. +++-++.+. -+|...|++.+.
T Consensus 24 gPvGl~tlA~~l~e-------d~~Tie~v~EPyLiq~G~I~RT 59 (76)
T PF05491_consen 24 GPVGLDTLAAALGE-------DKETIEDVIEPYLIQIGFIQRT 59 (76)
T ss_dssp S-B-HHHHHHHTTS--------HHHHHHTTHHHHHHTTSEEEE
T ss_pred CCeeHHHHHHHHCC-------CHhHHHHHhhHHHHHhhhHhhC
Confidence 48999999999999 566565444 688999999884
No 486
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=26.76 E-value=24 Score=30.86 Aligned_cols=48 Identities=8% Similarity=-0.013 Sum_probs=39.5
Q ss_pred CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-eeecCCCccc
Q 044482 47 GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-MYNLFPGAKE 101 (345)
Q Consensus 47 g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-~y~~t~~s~~ 101 (345)
|..++-.+||+++|+ ....++..|.-|.+.|+++.... ++.-++++..
T Consensus 37 G~~l~e~~La~~~gv-------SrtPVReAL~rL~~eGlv~~~p~rG~~V~~~~~~ 85 (230)
T COG1802 37 GERLSEEELAEELGV-------SRTPVREALRRLEAEGLVEIEPNRGAFVAPLSLA 85 (230)
T ss_pred CCCccHHHHHHHhCC-------CCccHHHHHHHHHHCCCeEecCCCCCeeCCCCHH
Confidence 457999999999999 35678999999999999988754 6767777655
No 487
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=26.50 E-value=3.5e+02 Score=24.31 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=60.7
Q ss_pred HHHHHhccC--cccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-----hhHhhhCC---CceEEeccCCcCCC-C-
Q 044482 168 KKILEIYKG--FKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-----PYVIKNAP---CVEHVEGDMFVNVP-S- 234 (345)
Q Consensus 168 ~~i~~~~~~--~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-----p~~i~~a~---ri~~~~gd~~~~~p-~- 234 (345)
..|+...+. .+...+||-+|.++|+....+..- -|+--+..++. ...+..|+ +|--+.-|+.-|.. .
T Consensus 143 A~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRm 222 (317)
T KOG1596|consen 143 AGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRM 222 (317)
T ss_pred HHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheee
Confidence 344444432 456789999999999988777664 45544555554 23455555 45445556655433 1
Q ss_pred --C--CEEEeccccccCC-hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 --G--QAIFTKSVLLNWS-DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 --~--D~i~~~~vlh~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+ |+||. +.+ ++++..+.-++.--|++ ||.++|.
T Consensus 223 lVgmVDvIFa-----Dvaqpdq~RivaLNA~~FLk~---gGhfvis 260 (317)
T KOG1596|consen 223 LVGMVDVIFA-----DVAQPDQARIVALNAQYFLKN---GGHFVIS 260 (317)
T ss_pred eeeeEEEEec-----cCCCchhhhhhhhhhhhhhcc---CCeEEEE
Confidence 2 55543 333 33444455567788999 9988776
No 488
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=26.14 E-value=97 Score=30.22 Aligned_cols=39 Identities=10% Similarity=0.092 Sum_probs=28.3
Q ss_pred HHHHHhccCcccccceEEecCCcc-----HHHHHHHHHCCCCeE
Q 044482 168 KKILEIYKGFKELKKLVDVASCLG-----ANMSLIVNTYPQITG 206 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G-----~~~~~l~~~~p~~~~ 206 (345)
+..++..|.+.+.--+-.+|||+| .++..|.+.||+...
T Consensus 121 r~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~~~~~ 164 (431)
T cd02188 121 DREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLI 164 (431)
T ss_pred HHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHcCccee
Confidence 344566666677788999999998 356667788997543
No 489
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=26.13 E-value=4.1e+02 Score=24.15 Aligned_cols=81 Identities=9% Similarity=0.037 Sum_probs=42.6
Q ss_pred eEEecCCcc--HHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCc---CCCCCCEEEeccccccCChhHHHH
Q 044482 183 LVDVASCLG--ANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFV---NVPSGQAIFTKSVLLNWSDEQCLK 254 (345)
Q Consensus 183 vlDiGgG~G--~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~---~~p~~D~i~~~~vlh~~~d~~~~~ 254 (345)
|-=||+|.= .++..+++ .+.++++.|. ++.++... .+... .+..+ .....|+|++. .++.....
T Consensus 3 Ig~IGlG~mG~~la~~L~~--~g~~V~~~dr~~~~~~~l~~~g~~~~-~s~~~~~~~~~~~dvIi~~-----vp~~~~~~ 74 (298)
T TIGR00872 3 LGLIGLGRMGANIVRRLAK--RGHDCVGYDHDQDAVKAMKEDRTTGV-ANLRELSQRLSAPRVVWVM-----VPHGIVDA 74 (298)
T ss_pred EEEEcchHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHcCCccc-CCHHHHHhhcCCCCEEEEE-----cCchHHHH
Confidence 344666542 23333333 3456788887 54444333 22111 11111 11223887765 45556677
Q ss_pred HHHHHHhhCCCCCCCcEEEEE
Q 044482 255 ILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 255 iL~~~~~aL~p~~~gG~lli~ 275 (345)
++.++...|++ | .++|.
T Consensus 75 v~~~l~~~l~~---g-~ivid 91 (298)
T TIGR00872 75 VLEELAPTLEK---G-DIVID 91 (298)
T ss_pred HHHHHHhhCCC---C-CEEEE
Confidence 88999999988 5 45444
No 490
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=25.63 E-value=7.5 Score=26.64 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=31.7
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID 89 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~ 89 (345)
|++.| ...| ..|+.+|++.+++ +++.++.-|-.|...|++...
T Consensus 18 V~~~L-l~~G-~ltl~~i~~~t~l-------~~~~Vk~~L~~LiQh~~v~y~ 60 (62)
T PF08221_consen 18 VGEVL-LSRG-RLTLREIVRRTGL-------SPKQVKKALVVLIQHNLVQYF 60 (62)
T ss_dssp HHHHH-HHC--SEEHHHHHHHHT---------HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHH-HHcC-CcCHHHHHHHhCC-------CHHHHHHHHHHHHHcCCeeee
Confidence 45555 3334 5899999999999 688898888889888888764
No 491
>PTZ00117 malate dehydrogenase; Provisional
Probab=25.56 E-value=4.8e+02 Score=24.11 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=23.1
Q ss_pred cceEEecCCc-cHHHHHHHHHCCCCeEEEeehh
Q 044482 181 KKLVDVASCL-GANMSLIVNTYPQITGINFDLP 212 (345)
Q Consensus 181 ~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dlp 212 (345)
.+|.=||+|+ |.....++....-...+++|..
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 4788899988 7776666655543468899983
No 492
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=25.41 E-value=4.9 Score=30.66 Aligned_cols=43 Identities=5% Similarity=0.030 Sum_probs=31.3
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID 89 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~ 89 (345)
|++.|... | .++-++||+.+++ ++.-++++|..|...|+++..
T Consensus 18 Il~~L~~~-~-~l~de~la~~~~l-------~~~~vRkiL~~L~~~~lv~~~ 60 (105)
T PF02002_consen 18 ILDALLRK-G-ELTDEDLAKKLGL-------KPKEVRKILYKLYEDGLVSYR 60 (105)
T ss_dssp HHHHHHHH----B-HHHHHHTT-S--------HHHHHHHHHHHHHHSS-EEE
T ss_pred HHHHHHHc-C-CcCHHHHHHHhCC-------CHHHHHHHHHHHHHCCCeEEE
Confidence 66677333 3 5899999999999 789999999999999999654
No 493
>PLN02688 pyrroline-5-carboxylate reductase
Probab=25.38 E-value=2e+02 Score=25.49 Aligned_cols=83 Identities=14% Similarity=0.011 Sum_probs=44.3
Q ss_pred eEEecCCc--cHHHHHHHHHC--CCCeEEEe-eh-hhHhhhCC--CceEEeccCCcCCCCCCEEEeccccccCChhHHHH
Q 044482 183 LVDVASCL--GANMSLIVNTY--PQITGINF-DL-PYVIKNAP--CVEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLK 254 (345)
Q Consensus 183 vlDiGgG~--G~~~~~l~~~~--p~~~~~~~-Dl-p~~i~~a~--ri~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~ 254 (345)
|.=||+|. +.++..|+++. +..++++. |. ++..+.+. .+... .|.-+-..+.|+|++.- +++....
T Consensus 3 I~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~-~~~~e~~~~aDvVil~v-----~~~~~~~ 76 (266)
T PLN02688 3 VGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTA-ASNTEVVKSSDVIILAV-----KPQVVKD 76 (266)
T ss_pred EEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEe-CChHHHHhcCCEEEEEE-----CcHHHHH
Confidence 44467664 34555555542 23367777 76 44333322 33321 11111111348887653 5666788
Q ss_pred HHHHHHhhCCCCCCCcEEEEE
Q 044482 255 ILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 255 iL~~~~~aL~p~~~gG~lli~ 275 (345)
++..+...+++ + +++|.
T Consensus 77 vl~~l~~~~~~---~-~~iIs 93 (266)
T PLN02688 77 VLTELRPLLSK---D-KLLVS 93 (266)
T ss_pred HHHHHHhhcCC---C-CEEEE
Confidence 88888888887 5 45444
No 494
>PRK13239 alkylmercury lyase; Provisional
Probab=24.93 E-value=19 Score=31.15 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=28.7
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccC
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSR 83 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~ 83 (345)
|+..| +. |+|.|.++||++++. ..+.++..|+.|...
T Consensus 27 llr~l-a~-G~pvt~~~lA~~~~~-------~~~~v~~~L~~l~~~ 63 (206)
T PRK13239 27 LLRLL-AK-GRPVSVTTLAAALGW-------PVEEVEAVLEAMPDT 63 (206)
T ss_pred HHHHH-Hc-CCCCCHHHHHHHhCC-------CHHHHHHHHHhCCCe
Confidence 66777 55 468999999999999 577777777776533
No 495
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=24.75 E-value=39 Score=29.36 Aligned_cols=33 Identities=9% Similarity=-0.045 Sum_probs=27.2
Q ss_pred HHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCc
Q 044482 25 QSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIR 63 (345)
Q Consensus 25 ~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~ 63 (345)
+-.+|+.|.++| -||.= . .+++.+||+.+|.++
T Consensus 160 Q~~vL~~A~~~G-YFd~P-R----~~~l~dLA~~lGISk 192 (215)
T COG3413 160 QLEVLRLAYKMG-YFDYP-R----RVSLKDLAKELGISK 192 (215)
T ss_pred HHHHHHHHHHcC-CCCCC-c----cCCHHHHHHHhCCCH
Confidence 346899999999 88765 3 589999999999953
No 496
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=24.72 E-value=2.9e+02 Score=25.48 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=33.4
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhH
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYV 214 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~ 214 (345)
...+.+.+....+..+|+=+|||.-.+...+.+.||+.++..+|-|..
T Consensus 261 v~~i~~~~~~~~~~~~Iil~GGGa~ll~~~l~~~f~~~~i~~~~dp~~ 308 (320)
T TIGR03739 261 VSTMMTWIGAPESIQNIVLVGGGAFLFKKAVKAAFPKHRIVEVDEPMF 308 (320)
T ss_pred HHHHHHhcccCCcccEEEEeCCcHHHHHHHHHHHCCCCeeEecCCcHH
Confidence 344555543233456788889988888888999999987766665543
No 497
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=24.60 E-value=1.9e+02 Score=26.63 Aligned_cols=43 Identities=9% Similarity=0.029 Sum_probs=31.1
Q ss_pred HHHHHHHhccCcccccceEEecCCccH----HHHHHHHHCCCCeEEEeeh
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGA----NMSLIVNTYPQITGINFDL 211 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~----~~~~l~~~~p~~~~~~~Dl 211 (345)
..++|.+..+ .....+=.|.|||. .++.|.+++|+++++++|-
T Consensus 158 T~~EI~~~~~---g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP 204 (300)
T COG0031 158 TGPEIWQQTD---GKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDP 204 (300)
T ss_pred hHHHHHHHhC---CCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECC
Confidence 3456666654 32456667888887 4566778899999999997
No 498
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=24.36 E-value=5.7e+02 Score=23.61 Aligned_cols=86 Identities=9% Similarity=0.008 Sum_probs=50.6
Q ss_pred cccceEEecCC-ccHHHHHHHHHCCCCeEEEeeh----hhHhhhCC--CceEEeccCCc-C-----CCCC-CEEEecccc
Q 044482 179 ELKKLVDVASC-LGANMSLIVNTYPQITGINFDL----PYVIKNAP--CVEHVEGDMFV-N-----VPSG-QAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG-~G~~~~~l~~~~p~~~~~~~Dl----p~~i~~a~--ri~~~~gd~~~-~-----~p~~-D~i~~~~vl 244 (345)
...+|+=+|+| .|.++..+++.. +.++++++. ++-.+.++ ...++ |..+ + ...+ |+++-.-
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~-- 246 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEAT-- 246 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECc--
Confidence 44677776754 477888888876 457888874 44444444 33332 2111 1 1122 6655331
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
.. ...+....+.|++ +|+++++ ...
T Consensus 247 ----g~--~~~~~~~~~~l~~---~G~~v~~-G~~ 271 (355)
T cd08230 247 ----GV--PPLAFEALPALAP---NGVVILF-GVP 271 (355)
T ss_pred ----CC--HHHHHHHHHHccC---CcEEEEE-ecC
Confidence 11 1357788899999 9999988 544
No 499
>PRK13243 glyoxylate reductase; Reviewed
Probab=24.25 E-value=1.2e+02 Score=28.25 Aligned_cols=80 Identities=8% Similarity=-0.029 Sum_probs=41.4
Q ss_pred ccceEEecCCc-cHHHHHHHHHCCCCeEEEeehhhHhhhCC--CceEEeccCCcCCCCCCEEEeccccccCChhHHHHHH
Q 044482 180 LKKLVDVASCL-GANMSLIVNTYPQITGINFDLPYVIKNAP--CVEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKIL 256 (345)
Q Consensus 180 ~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~--ri~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~iL 256 (345)
.++|.=||.|. |......++.+ +.+++++|...--.... .+.+ .++-+-++++|+|++.--+ +++...-+-
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~--~~l~ell~~aDiV~l~lP~---t~~T~~~i~ 223 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGF-GMRILYYSRTRKPEAEKELGAEY--RPLEELLRESDFVSLHVPL---TKETYHMIN 223 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEEEECCCCChhhHHHcCCEe--cCHHHHHhhCCEEEEeCCC---ChHHhhccC
Confidence 46888888765 65555555556 56889999621111111 2221 1222223455888765433 222211223
Q ss_pred HHHHhhCCC
Q 044482 257 KNCYDALPK 265 (345)
Q Consensus 257 ~~~~~aL~p 265 (345)
++..+.|||
T Consensus 224 ~~~~~~mk~ 232 (333)
T PRK13243 224 EERLKLMKP 232 (333)
T ss_pred HHHHhcCCC
Confidence 456677787
No 500
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=24.21 E-value=21 Score=31.13 Aligned_cols=42 Identities=7% Similarity=-0.092 Sum_probs=35.8
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCC
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFP 97 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~ 97 (345)
+.|-++||..+|+ .+..+.|+|..|...|+++.....+....
T Consensus 184 ~lt~~~iA~~lG~-------sr~tvsR~l~~l~~~g~I~~~~~~i~i~d 225 (235)
T PRK11161 184 TMTRGDIGNYLGL-------TVETISRLLGRFQKSGMLAVKGKYITIEN 225 (235)
T ss_pred cccHHHHHHHhCC-------cHHHHHHHHHHHHHCCCEEecCCEEEEcC
Confidence 5788999999999 57889999999999999998776655543
Done!