Query 044482
Match_columns 345
No_of_seqs 242 out of 1975
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 05:48:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 3.1E-56 1.1E-60 419.3 21.3 308 18-344 14-346 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 2.7E-52 9.4E-57 394.0 24.8 319 18-343 26-364 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 1.4E-51 4.9E-56 389.7 24.7 320 18-345 27-368 (368)
4 3lst_A CALO1 methyltransferase 100.0 1.1E-48 3.6E-53 367.5 23.8 310 14-344 24-348 (348)
5 3gwz_A MMCR; methyltransferase 100.0 2E-48 6.9E-53 368.4 20.7 305 18-344 44-369 (369)
6 3i53_A O-methyltransferase; CO 100.0 1.5E-48 5.3E-53 364.1 17.2 302 17-343 10-331 (332)
7 1zg3_A Isoflavanone 4'-O-methy 100.0 1.7E-47 5.8E-52 360.6 19.0 316 18-343 16-358 (358)
8 1fp2_A Isoflavone O-methyltran 100.0 6.8E-47 2.3E-51 355.8 17.9 314 19-343 23-352 (352)
9 2ip2_A Probable phenazine-spec 100.0 1.9E-46 6.4E-51 350.1 19.4 302 18-344 14-334 (334)
10 1fp1_D Isoliquiritigenin 2'-O- 100.0 3.2E-46 1.1E-50 353.8 19.6 318 18-343 30-372 (372)
11 3dp7_A SAM-dependent methyltra 100.0 2.4E-44 8.3E-49 339.7 13.8 308 16-344 19-355 (363)
12 1tw3_A COMT, carminomycin 4-O- 100.0 1.6E-43 5.5E-48 333.6 15.7 306 18-344 25-356 (360)
13 3mcz_A O-methyltransferase; ad 100.0 4E-43 1.4E-47 329.9 17.6 303 17-344 29-349 (352)
14 1qzz_A RDMB, aclacinomycin-10- 100.0 6.6E-44 2.3E-48 337.8 11.9 306 18-344 22-356 (374)
15 1x19_A CRTF-related protein; m 100.0 1.2E-42 4.1E-47 327.6 17.2 297 21-344 40-359 (359)
16 2r3s_A Uncharacterized protein 100.0 1.6E-42 5.5E-47 323.4 17.3 307 18-344 12-335 (335)
17 4gek_A TRNA (CMO5U34)-methyltr 99.9 6E-21 2.1E-25 171.4 16.9 163 178-345 69-258 (261)
18 3dtn_A Putative methyltransfer 99.8 1.7E-19 5.7E-24 158.9 15.6 173 168-344 33-226 (234)
19 3dh0_A SAM dependent methyltra 99.8 5.8E-18 2E-22 147.4 14.0 153 168-344 27-193 (219)
20 3dlc_A Putative S-adenosyl-L-m 99.8 9.5E-19 3.3E-23 151.8 8.5 165 167-341 33-212 (219)
21 1ve3_A Hypothetical protein PH 99.8 2E-18 6.9E-23 150.9 9.3 191 144-344 6-227 (227)
22 3pfg_A N-methyltransferase; N, 99.7 4.3E-18 1.5E-22 152.6 11.1 161 179-345 50-250 (263)
23 3hnr_A Probable methyltransfer 99.7 2.2E-17 7.4E-22 143.8 15.0 165 169-344 36-212 (220)
24 3ou2_A SAM-dependent methyltra 99.7 3.7E-17 1.3E-21 141.8 14.7 157 169-333 36-206 (218)
25 3bus_A REBM, methyltransferase 99.7 6.6E-17 2.3E-21 145.5 14.1 154 167-333 50-217 (273)
26 3bxo_A N,N-dimethyltransferase 99.7 5.4E-17 1.9E-21 142.9 13.0 161 178-344 39-239 (239)
27 3ujc_A Phosphoethanolamine N-m 99.7 4.9E-17 1.7E-21 145.5 12.2 153 167-333 44-207 (266)
28 3h2b_A SAM-dependent methyltra 99.7 4.3E-17 1.5E-21 140.2 11.0 145 180-344 42-195 (203)
29 1vl5_A Unknown conserved prote 99.7 2.9E-17 9.9E-22 147.0 10.3 152 166-332 25-190 (260)
30 3dli_A Methyltransferase; PSI- 99.7 8.7E-17 3E-21 142.2 13.0 149 168-333 30-185 (240)
31 2o57_A Putative sarcosine dime 99.7 1.2E-16 4E-21 145.8 14.1 151 166-332 66-234 (297)
32 2qe6_A Uncharacterized protein 99.7 9.1E-17 3.1E-21 145.2 12.9 137 179-328 77-238 (274)
33 3vc1_A Geranyl diphosphate 2-C 99.7 1.8E-16 6.3E-21 145.8 15.0 163 154-332 93-269 (312)
34 1xtp_A LMAJ004091AAA; SGPP, st 99.7 6.6E-17 2.3E-21 143.8 11.6 147 167-333 82-239 (254)
35 1kpg_A CFA synthase;, cyclopro 99.7 1.8E-16 6.1E-21 143.9 13.7 160 167-333 53-229 (287)
36 3ocj_A Putative exported prote 99.7 5.2E-17 1.8E-21 149.0 10.2 163 177-344 116-304 (305)
37 3hem_A Cyclopropane-fatty-acyl 99.7 3.5E-16 1.2E-20 143.1 15.6 160 167-333 61-244 (302)
38 1xxl_A YCGJ protein; structura 99.7 1.6E-16 5.3E-21 140.6 12.5 154 164-332 7-174 (239)
39 3mgg_A Methyltransferase; NYSG 99.7 1.6E-16 5.5E-21 143.3 10.8 149 177-332 35-198 (276)
40 3i9f_A Putative type 11 methyl 99.7 1.1E-16 3.8E-21 133.7 9.0 146 169-344 8-160 (170)
41 1nkv_A Hypothetical protein YJ 99.7 2.7E-16 9.4E-21 140.0 12.1 150 167-332 25-187 (256)
42 2ex4_A Adrenal gland protein A 99.7 1.5E-16 5.2E-21 140.7 9.8 135 179-333 79-226 (241)
43 2fk8_A Methoxy mycolic acid sy 99.7 1.1E-15 3.6E-20 140.9 15.3 159 167-332 79-254 (318)
44 3f4k_A Putative methyltransfer 99.6 6.4E-16 2.2E-20 137.7 11.9 148 169-333 36-197 (257)
45 3jwg_A HEN1, methyltransferase 99.6 1.8E-15 6E-20 131.7 14.1 162 169-344 20-210 (219)
46 3lcc_A Putative methyl chlorid 99.6 5.1E-16 1.7E-20 136.7 10.5 128 181-333 68-208 (235)
47 3g2m_A PCZA361.24; SAM-depende 99.6 2.8E-16 9.4E-21 143.6 9.0 171 165-343 70-291 (299)
48 3e23_A Uncharacterized protein 99.6 1.1E-15 3.9E-20 132.1 12.2 134 177-332 41-182 (211)
49 3gu3_A Methyltransferase; alph 99.6 5.3E-16 1.8E-20 140.8 10.0 157 169-332 12-190 (284)
50 3kkz_A Uncharacterized protein 99.6 7.8E-16 2.7E-20 138.2 11.0 148 169-333 36-197 (267)
51 2p7i_A Hypothetical protein; p 99.6 8.6E-16 2.9E-20 135.7 10.8 146 178-332 41-199 (250)
52 3l8d_A Methyltransferase; stru 99.6 1.6E-15 5.6E-20 133.8 11.7 138 179-332 53-200 (242)
53 3jwh_A HEN1; methyltransferase 99.6 2.3E-15 7.9E-20 130.8 12.4 146 170-328 21-188 (217)
54 3d2l_A SAM-dependent methyltra 99.6 2.4E-15 8.3E-20 132.6 12.5 166 169-344 26-243 (243)
55 3bkx_A SAM-dependent methyltra 99.6 4.1E-15 1.4E-19 133.9 14.2 158 168-332 33-219 (275)
56 1y8c_A S-adenosylmethionine-de 99.6 6.4E-16 2.2E-20 136.4 8.7 159 179-344 37-245 (246)
57 1pjz_A Thiopurine S-methyltran 99.6 9.8E-16 3.4E-20 132.2 9.5 138 170-333 14-177 (203)
58 3bkw_A MLL3908 protein, S-aden 99.6 1.4E-15 4.9E-20 134.1 10.5 156 169-332 34-214 (243)
59 3g5l_A Putative S-adenosylmeth 99.6 2E-15 6.9E-20 134.3 11.3 156 168-332 34-216 (253)
60 3cgg_A SAM-dependent methyltra 99.6 5.8E-15 2E-19 125.3 13.1 129 169-332 38-175 (195)
61 3sm3_A SAM-dependent methyltra 99.6 2.4E-15 8.4E-20 131.7 10.9 146 178-332 29-207 (235)
62 3ege_A Putative methyltransfer 99.6 6.3E-15 2.1E-19 132.0 13.7 149 167-332 23-178 (261)
63 2xvm_A Tellurite resistance pr 99.6 3.9E-15 1.3E-19 127.1 11.7 139 169-332 23-173 (199)
64 3cc8_A Putative methyltransfer 99.6 1.9E-15 6.4E-20 131.9 9.4 152 168-333 23-186 (230)
65 4fsd_A Arsenic methyltransfera 99.6 3.4E-15 1.2E-19 141.3 11.7 140 179-331 83-250 (383)
66 3e8s_A Putative SAM dependent 99.6 6.1E-15 2.1E-19 128.4 12.1 163 169-344 43-227 (227)
67 2p35_A Trans-aconitate 2-methy 99.6 2.9E-15 9.8E-20 133.5 9.7 147 169-326 24-184 (259)
68 2qm3_A Predicted methyltransfe 99.6 7.3E-16 2.5E-20 145.4 6.1 235 6-275 10-276 (373)
69 3ccf_A Cyclopropane-fatty-acyl 99.6 6.5E-15 2.2E-19 133.1 11.3 151 168-332 47-210 (279)
70 4htf_A S-adenosylmethionine-de 99.6 7.4E-15 2.5E-19 133.1 11.1 153 168-333 59-233 (285)
71 1vlm_A SAM-dependent methyltra 99.6 2.2E-14 7.6E-19 124.9 13.5 135 180-332 48-188 (219)
72 2yqz_A Hypothetical protein TT 99.6 1.5E-14 5.1E-19 129.1 11.0 144 177-331 37-195 (263)
73 3g07_A 7SK snRNA methylphospha 99.5 5E-15 1.7E-19 134.9 7.6 154 179-344 46-287 (292)
74 2zfu_A Nucleomethylin, cerebra 99.5 2.3E-14 8E-19 124.2 10.7 132 169-344 57-191 (215)
75 3ggd_A SAM-dependent methyltra 99.5 1.7E-14 5.8E-19 127.7 9.9 145 177-332 54-219 (245)
76 1wzn_A SAM-dependent methyltra 99.5 2.2E-13 7.6E-18 120.8 16.3 101 169-275 32-144 (252)
77 2aot_A HMT, histamine N-methyl 99.5 4E-14 1.4E-18 128.9 10.8 136 179-329 52-218 (292)
78 3thr_A Glycine N-methyltransfe 99.5 2.7E-14 9.1E-19 129.8 9.4 94 177-275 55-174 (293)
79 2p8j_A S-adenosylmethionine-de 99.5 1.2E-14 4.2E-19 125.2 6.3 146 178-329 22-180 (209)
80 3m70_A Tellurite resistance pr 99.5 7.1E-14 2.4E-18 126.6 10.9 136 170-330 112-258 (286)
81 2i62_A Nicotinamide N-methyltr 99.5 7.1E-14 2.4E-18 124.8 9.2 148 178-344 55-261 (265)
82 2a14_A Indolethylamine N-methy 99.5 5.2E-14 1.8E-18 126.2 7.9 149 178-345 54-261 (263)
83 3q87_B N6 adenine specific DNA 99.5 4.5E-13 1.5E-17 112.1 12.8 126 179-341 23-159 (170)
84 1ri5_A MRNA capping enzyme; me 99.5 2.1E-13 7.1E-18 123.8 11.6 150 178-332 63-250 (298)
85 4e2x_A TCAB9; kijanose, tetron 99.5 5.8E-14 2E-18 134.2 7.5 152 163-333 92-254 (416)
86 1fbn_A MJ fibrillarin homologu 99.5 4.1E-13 1.4E-17 117.8 11.9 145 171-345 67-229 (230)
87 4hg2_A Methyltransferase type 99.5 2.1E-13 7.1E-18 121.8 9.9 93 179-280 39-138 (257)
88 3giw_A Protein of unknown func 99.4 4E-13 1.4E-17 119.9 11.5 138 179-328 78-243 (277)
89 2gb4_A Thiopurine S-methyltran 99.4 2.4E-13 8.1E-18 121.2 9.8 129 179-332 68-227 (252)
90 3grz_A L11 mtase, ribosomal pr 99.4 2.6E-13 9E-18 116.7 9.4 128 178-344 59-197 (205)
91 2kw5_A SLR1183 protein; struct 99.4 5.1E-13 1.8E-17 114.4 11.1 128 182-332 32-171 (202)
92 3g5t_A Trans-aconitate 3-methy 99.4 1.8E-13 6.1E-18 124.9 8.3 92 178-275 35-148 (299)
93 3mq2_A 16S rRNA methyltransfer 99.4 4.5E-13 1.5E-17 116.4 9.7 140 177-333 25-185 (218)
94 3e05_A Precorrin-6Y C5,15-meth 99.4 2.1E-12 7.2E-17 111.0 13.5 121 169-329 31-164 (204)
95 4dzr_A Protein-(glutamine-N5) 99.4 2.3E-13 7.9E-18 117.3 7.3 144 168-344 19-205 (215)
96 2b3t_A Protein methyltransfera 99.4 4.7E-12 1.6E-16 114.2 15.5 139 169-343 101-275 (276)
97 2g72_A Phenylethanolamine N-me 99.4 1.1E-13 3.9E-18 125.6 4.7 136 179-333 71-257 (289)
98 2gs9_A Hypothetical protein TT 99.4 1E-12 3.5E-17 113.4 9.9 139 169-329 28-175 (211)
99 3p2e_A 16S rRNA methylase; met 99.4 2.3E-12 7.9E-17 112.8 10.7 141 179-333 24-186 (225)
100 1dus_A MJ0882; hypothetical pr 99.4 3.4E-12 1.2E-16 108.0 11.4 137 169-343 43-193 (194)
101 3uwp_A Histone-lysine N-methyl 99.4 2.1E-12 7.1E-17 121.0 10.4 110 167-284 162-295 (438)
102 3orh_A Guanidinoacetate N-meth 99.4 3.4E-13 1.2E-17 119.0 4.9 130 178-329 59-207 (236)
103 3ofk_A Nodulation protein S; N 99.4 1.2E-12 4.1E-17 113.3 8.3 94 177-275 49-153 (216)
104 2vdw_A Vaccinia virus capping 99.3 6.6E-12 2.2E-16 114.8 11.5 95 179-278 48-170 (302)
105 4df3_A Fibrillarin-like rRNA/T 99.3 3.6E-12 1.2E-16 111.5 9.1 142 173-343 72-231 (233)
106 3hm2_A Precorrin-6Y C5,15-meth 99.3 3.9E-12 1.3E-16 106.4 8.8 96 169-275 16-126 (178)
107 1zx0_A Guanidinoacetate N-meth 99.3 2.3E-12 8E-17 113.3 6.8 95 179-278 60-171 (236)
108 3evz_A Methyltransferase; NYSG 99.3 1.1E-11 3.6E-16 108.5 11.0 135 177-344 53-220 (230)
109 3htx_A HEN1; HEN1, small RNA m 99.3 1.1E-11 3.9E-16 124.3 12.4 101 170-275 713-833 (950)
110 2ipx_A RRNA 2'-O-methyltransfe 99.3 4E-12 1.4E-16 111.6 7.9 140 177-344 75-232 (233)
111 3iv6_A Putative Zn-dependent a 99.3 7.1E-12 2.4E-16 111.8 9.5 101 168-275 35-147 (261)
112 3bgv_A MRNA CAP guanine-N7 met 99.3 8.4E-12 2.9E-16 114.5 10.1 95 179-278 34-156 (313)
113 1af7_A Chemotaxis receptor met 99.3 3.4E-12 1.2E-16 114.8 7.1 93 180-275 106-251 (274)
114 1yzh_A TRNA (guanine-N(7)-)-me 99.3 1.3E-11 4.4E-16 106.9 10.4 94 179-275 41-155 (214)
115 3fzg_A 16S rRNA methylase; met 99.3 1E-11 3.4E-16 104.4 8.6 128 178-334 48-189 (200)
116 1xdz_A Methyltransferase GIDB; 99.3 9.5E-12 3.2E-16 109.8 9.0 131 177-344 68-219 (240)
117 1yb2_A Hypothetical protein TA 99.3 5.1E-12 1.8E-16 113.9 7.3 122 169-331 101-236 (275)
118 1nt2_A Fibrillarin-like PRE-rR 99.3 4.1E-11 1.4E-15 103.7 12.3 134 177-343 55-209 (210)
119 2pxx_A Uncharacterized protein 99.3 5.6E-12 1.9E-16 108.6 6.6 96 178-278 41-160 (215)
120 1jsx_A Glucose-inhibited divis 99.3 8.3E-12 2.9E-16 107.2 7.6 87 180-275 66-164 (207)
121 4dcm_A Ribosomal RNA large sub 99.2 1.2E-11 4.2E-16 116.3 9.1 103 169-275 213-333 (375)
122 1l3i_A Precorrin-6Y methyltran 99.2 1.4E-11 4.9E-16 103.9 8.5 117 170-327 25-155 (192)
123 2pjd_A Ribosomal RNA small sub 99.2 8.2E-12 2.8E-16 116.3 7.1 104 168-275 186-302 (343)
124 2h00_A Methyltransferase 10 do 99.2 8.8E-13 3E-17 117.3 0.4 142 179-333 65-239 (254)
125 3mb5_A SAM-dependent methyltra 99.2 3.4E-11 1.2E-15 106.9 10.5 123 169-332 84-222 (255)
126 1g8a_A Fibrillarin-like PRE-rR 99.2 7E-11 2.4E-15 103.1 12.3 139 177-344 71-227 (227)
127 2nxc_A L11 mtase, ribosomal pr 99.2 1.5E-11 5E-16 109.7 7.8 124 178-342 119-253 (254)
128 2ld4_A Anamorsin; methyltransf 99.2 2.3E-11 8E-16 101.8 8.0 111 177-331 10-133 (176)
129 3njr_A Precorrin-6Y methylase; 99.2 6.8E-11 2.3E-15 101.8 11.1 118 170-330 47-178 (204)
130 3eey_A Putative rRNA methylase 99.2 3.1E-11 1.1E-15 102.8 8.5 98 177-278 20-140 (197)
131 3mti_A RRNA methylase; SAM-dep 99.2 2.9E-11 9.8E-16 102.0 8.1 140 177-343 20-183 (185)
132 3kr9_A SAM-dependent methyltra 99.2 1.2E-10 4.3E-15 101.2 12.3 126 179-343 15-157 (225)
133 3fpf_A Mtnas, putative unchara 99.2 1.1E-10 3.7E-15 105.4 12.2 91 177-277 120-222 (298)
134 3bwc_A Spermidine synthase; SA 99.2 3E-11 1E-15 110.6 8.4 137 178-343 94-257 (304)
135 3dxy_A TRNA (guanine-N(7)-)-me 99.2 1.6E-11 5.3E-16 107.0 6.1 94 179-275 34-149 (218)
136 2fca_A TRNA (guanine-N(7)-)-me 99.2 3.8E-11 1.3E-15 104.0 8.4 94 179-275 38-152 (213)
137 3lpm_A Putative methyltransfer 99.2 1.6E-10 5.4E-15 103.1 12.1 133 177-344 46-219 (259)
138 3g89_A Ribosomal RNA small sub 99.2 3.3E-11 1.1E-15 107.0 7.3 130 178-344 79-229 (249)
139 3lec_A NADB-rossmann superfami 99.2 1.9E-10 6.6E-15 100.2 11.6 126 179-343 21-163 (230)
140 1o9g_A RRNA methyltransferase; 99.2 1.1E-10 3.9E-15 103.4 10.3 106 169-279 42-216 (250)
141 2yxd_A Probable cobalt-precorr 99.2 9.4E-11 3.2E-15 98.1 9.2 117 169-329 26-154 (183)
142 2y1w_A Histone-arginine methyl 99.2 4.4E-11 1.5E-15 111.5 7.6 103 168-275 40-154 (348)
143 3m33_A Uncharacterized protein 99.2 1.1E-11 3.7E-16 108.4 3.3 110 178-331 47-166 (226)
144 3b3j_A Histone-arginine methyl 99.1 5.5E-11 1.9E-15 115.3 7.9 104 167-275 147-262 (480)
145 3id6_C Fibrillarin-like rRNA/T 99.1 3.4E-10 1.2E-14 99.1 12.2 140 177-344 74-231 (232)
146 3opn_A Putative hemolysin; str 99.1 2.9E-11 9.8E-16 106.3 5.0 154 169-343 27-201 (232)
147 1u2z_A Histone-lysine N-methyl 99.1 2.6E-10 8.8E-15 108.6 11.3 108 168-283 232-365 (433)
148 1ej0_A FTSJ; methyltransferase 99.1 2.5E-10 8.6E-15 94.7 10.0 103 169-275 12-135 (180)
149 2avn_A Ubiquinone/menaquinone 99.1 5.3E-11 1.8E-15 106.2 5.9 91 179-275 54-151 (260)
150 3duw_A OMT, O-methyltransferas 99.1 2E-10 7E-15 99.8 9.1 95 177-280 56-170 (223)
151 3gnl_A Uncharacterized protein 99.1 4.7E-10 1.6E-14 98.6 11.3 127 179-344 21-164 (244)
152 3lcv_B Sisomicin-gentamicin re 99.1 9.1E-11 3.1E-15 103.1 6.6 130 178-334 131-273 (281)
153 1o54_A SAM-dependent O-methylt 99.1 1.5E-10 5.1E-15 104.3 8.1 97 168-275 102-212 (277)
154 3lbf_A Protein-L-isoaspartate 99.1 1.6E-10 5.5E-15 99.4 7.9 94 168-275 67-173 (210)
155 2plw_A Ribosomal RNA methyltra 99.1 3E-10 1E-14 96.9 9.5 103 169-275 12-153 (201)
156 3r3h_A O-methyltransferase, SA 99.1 1.7E-10 6E-15 101.9 8.1 96 178-282 59-175 (242)
157 3p9n_A Possible methyltransfer 99.1 6.3E-10 2.1E-14 94.2 11.2 95 179-279 44-155 (189)
158 2pwy_A TRNA (adenine-N(1)-)-me 99.1 1.7E-10 5.9E-15 102.3 7.9 123 168-331 86-223 (258)
159 3ntv_A MW1564 protein; rossman 99.1 9.6E-11 3.3E-15 102.8 6.2 96 177-281 69-180 (232)
160 2yxe_A Protein-L-isoaspartate 99.1 1.9E-10 6.6E-15 99.3 8.0 95 169-275 68-176 (215)
161 2bm8_A Cephalosporin hydroxyla 99.1 4.1E-10 1.4E-14 99.1 10.1 90 180-278 82-188 (236)
162 2gpy_A O-methyltransferase; st 99.1 2.3E-10 7.7E-15 100.3 8.3 96 177-281 52-164 (233)
163 3u81_A Catechol O-methyltransf 99.1 1.3E-10 4.3E-15 101.2 6.5 96 177-279 56-172 (221)
164 3ckk_A TRNA (guanine-N(7)-)-me 99.1 1.4E-10 4.8E-15 102.1 6.6 94 179-275 46-167 (235)
165 3hp7_A Hemolysin, putative; st 99.1 4.2E-10 1.4E-14 101.6 9.2 145 169-333 75-233 (291)
166 2frn_A Hypothetical protein PH 99.1 4.6E-10 1.6E-14 101.2 9.5 117 178-328 124-253 (278)
167 1jg1_A PIMT;, protein-L-isoasp 99.0 2.6E-10 8.7E-15 100.2 7.2 96 167-275 80-188 (235)
168 2fyt_A Protein arginine N-meth 99.0 5E-10 1.7E-14 104.0 9.5 101 168-273 54-168 (340)
169 3tfw_A Putative O-methyltransf 99.0 6.6E-10 2.3E-14 98.5 9.7 95 177-280 61-173 (248)
170 3q7e_A Protein arginine N-meth 99.0 2.5E-10 8.7E-15 106.4 7.2 94 177-274 64-171 (349)
171 2ozv_A Hypothetical protein AT 99.0 3E-10 1E-14 101.4 7.4 96 177-275 34-169 (260)
172 3tr6_A O-methyltransferase; ce 99.0 1.5E-10 5E-15 100.8 5.0 95 178-281 63-178 (225)
173 1nv8_A HEMK protein; class I a 99.0 8.7E-10 3E-14 99.8 10.0 92 179-275 123-248 (284)
174 1vbf_A 231AA long hypothetical 99.0 5.5E-10 1.9E-14 97.5 8.3 96 168-278 60-166 (231)
175 3gjy_A Spermidine synthase; AP 99.0 2.9E-10 9.8E-15 103.8 6.5 92 181-275 91-199 (317)
176 3sso_A Methyltransferase; macr 99.0 2.4E-10 8.1E-15 106.9 5.5 94 179-279 216-326 (419)
177 2vdv_E TRNA (guanine-N(7)-)-me 99.0 3.1E-10 1E-14 100.4 5.5 90 178-275 48-172 (246)
178 3dr5_A Putative O-methyltransf 99.0 1.6E-09 5.5E-14 94.3 10.0 91 181-280 58-166 (221)
179 3dmg_A Probable ribosomal RNA 99.0 5.7E-10 2E-14 105.0 7.5 92 179-275 233-339 (381)
180 1dl5_A Protein-L-isoaspartate 99.0 6.9E-10 2.3E-14 102.0 7.8 96 168-275 65-174 (317)
181 2fhp_A Methylase, putative; al 99.0 5.5E-10 1.9E-14 93.9 6.2 92 177-275 42-153 (187)
182 1g6q_1 HnRNP arginine N-methyl 99.0 9.5E-10 3.2E-14 101.6 7.8 94 177-274 36-143 (328)
183 2esr_A Methyltransferase; stru 99.0 2.8E-10 9.6E-15 95.2 3.6 100 169-275 21-137 (177)
184 3adn_A Spermidine synthase; am 99.0 7E-10 2.4E-14 100.8 6.5 94 179-275 83-197 (294)
185 3c3p_A Methyltransferase; NP_9 98.9 7.6E-10 2.6E-14 95.3 6.3 94 179-281 56-164 (210)
186 1p91_A Ribosomal RNA large sub 98.9 9.1E-10 3.1E-14 98.4 6.9 89 178-279 84-180 (269)
187 3r0q_C Probable protein argini 98.9 1.2E-09 4.1E-14 102.8 7.9 101 170-275 55-168 (376)
188 2avd_A Catechol-O-methyltransf 98.9 6.5E-10 2.2E-14 96.9 5.5 95 177-280 67-182 (229)
189 3tma_A Methyltransferase; thum 98.9 3.2E-09 1.1E-13 99.1 9.9 105 167-275 192-316 (354)
190 2b25_A Hypothetical protein; s 98.9 1.9E-10 6.6E-15 106.5 1.6 97 168-275 95-218 (336)
191 2hnk_A SAM-dependent O-methylt 98.9 1.1E-09 3.7E-14 96.4 6.1 95 177-280 58-184 (239)
192 1ws6_A Methyltransferase; stru 98.9 6.3E-10 2.2E-14 92.1 4.3 88 179-275 41-146 (171)
193 1ixk_A Methyltransferase; open 98.9 2E-09 6.8E-14 98.9 7.7 102 172-278 112-247 (315)
194 2nyu_A Putative ribosomal RNA 98.9 2.2E-09 7.6E-14 91.0 7.4 105 169-278 12-146 (196)
195 1sui_A Caffeoyl-COA O-methyltr 98.9 1.7E-09 5.7E-14 95.9 6.8 94 178-280 78-193 (247)
196 3frh_A 16S rRNA methylase; met 98.9 4E-09 1.4E-13 91.8 8.8 92 177-275 103-205 (253)
197 3gdh_A Trimethylguanosine synt 98.8 2.3E-10 7.7E-15 100.7 -0.8 131 179-334 78-221 (241)
198 3dou_A Ribosomal RNA large sub 98.8 3.4E-09 1.2E-13 90.1 6.4 102 168-275 14-138 (191)
199 2fpo_A Methylase YHHF; structu 98.8 4.1E-09 1.4E-13 90.3 6.7 90 179-275 54-159 (202)
200 3c3y_A Pfomt, O-methyltransfer 98.8 3.5E-09 1.2E-13 93.2 6.3 93 178-279 69-183 (237)
201 2yvl_A TRMI protein, hypotheti 98.8 1.6E-08 5.3E-13 89.0 10.1 94 169-275 82-189 (248)
202 1zq9_A Probable dimethyladenos 98.8 4.4E-09 1.5E-13 95.2 6.7 100 167-273 17-144 (285)
203 3cbg_A O-methyltransferase; cy 98.8 2.8E-09 9.7E-14 93.4 5.2 94 178-280 71-185 (232)
204 2oxt_A Nucleoside-2'-O-methylt 98.8 8.9E-09 3E-13 92.1 8.3 102 169-279 65-187 (265)
205 1r18_A Protein-L-isoaspartate( 98.8 4.3E-09 1.5E-13 91.7 6.2 88 177-275 82-193 (227)
206 1i9g_A Hypothetical protein RV 98.8 6.2E-09 2.1E-13 93.5 7.4 97 168-275 89-202 (280)
207 2p41_A Type II methyltransfera 98.8 1.5E-08 5.3E-13 92.4 9.7 93 177-275 80-190 (305)
208 1iy9_A Spermidine synthase; ro 98.8 2E-09 6.9E-14 96.9 3.8 94 179-275 75-188 (275)
209 2wa2_A Non-structural protein 98.8 9.2E-09 3.2E-13 92.5 8.0 95 177-279 80-195 (276)
210 2i7c_A Spermidine synthase; tr 98.8 2.6E-09 8.9E-14 96.6 4.0 95 178-275 77-191 (283)
211 3bzb_A Uncharacterized protein 98.8 3.6E-08 1.2E-12 88.9 11.2 95 177-275 77-204 (281)
212 2pbf_A Protein-L-isoaspartate 98.8 8.6E-09 2.9E-13 89.6 6.8 88 177-275 78-192 (227)
213 2ift_A Putative methylase HI07 98.8 5E-09 1.7E-13 89.7 5.2 90 179-275 53-162 (201)
214 1xj5_A Spermidine synthase 1; 98.8 3.9E-09 1.3E-13 97.6 4.7 95 178-275 119-234 (334)
215 4azs_A Methyltransferase WBDD; 98.8 2E-09 6.7E-14 106.8 2.7 98 179-282 66-178 (569)
216 3a27_A TYW2, uncharacterized p 98.8 4.4E-09 1.5E-13 94.5 4.6 93 177-279 117-221 (272)
217 2o07_A Spermidine synthase; st 98.8 3.4E-09 1.2E-13 96.7 3.9 95 178-275 94-208 (304)
218 3tm4_A TRNA (guanine N2-)-meth 98.8 5.1E-08 1.8E-12 91.5 12.1 119 177-333 215-353 (373)
219 2b2c_A Spermidine synthase; be 98.8 3.3E-09 1.1E-13 97.3 3.6 93 179-275 108-221 (314)
220 1uir_A Polyamine aminopropyltr 98.7 4.2E-09 1.4E-13 96.6 4.1 94 179-275 77-194 (314)
221 2pt6_A Spermidine synthase; tr 98.7 4.2E-09 1.4E-13 96.9 4.0 93 179-275 116-229 (321)
222 1i1n_A Protein-L-isoaspartate 98.7 1.7E-08 5.9E-13 87.6 7.6 88 177-275 75-181 (226)
223 2ih2_A Modification methylase 98.7 3.5E-08 1.2E-12 93.9 10.2 105 167-275 28-163 (421)
224 1ne2_A Hypothetical protein TA 98.7 2E-08 6.9E-13 85.5 7.0 85 177-263 49-139 (200)
225 1inl_A Spermidine synthase; be 98.7 7.5E-09 2.6E-13 94.1 4.3 94 179-275 90-204 (296)
226 2f8l_A Hypothetical protein LM 98.7 2.4E-08 8.2E-13 92.7 7.3 94 179-275 130-255 (344)
227 3ajd_A Putative methyltransfer 98.7 2.5E-08 8.6E-13 89.6 7.1 99 177-279 81-213 (274)
228 1qam_A ERMC' methyltransferase 98.7 3.5E-08 1.2E-12 87.2 7.7 87 167-256 19-115 (244)
229 1mjf_A Spermidine synthase; sp 98.7 1.2E-08 4E-13 92.1 4.7 93 179-275 75-192 (281)
230 4hc4_A Protein arginine N-meth 98.7 2.9E-08 1E-12 92.9 7.2 90 180-273 84-186 (376)
231 2cmg_A Spermidine synthase; tr 98.6 2.8E-08 9.7E-13 88.7 6.3 84 179-275 72-170 (262)
232 3b5i_A S-adenosyl-L-methionine 98.6 1.6E-07 5.6E-12 87.6 11.7 147 180-331 53-297 (374)
233 2yxl_A PH0851 protein, 450AA l 98.6 4.1E-08 1.4E-12 94.5 7.7 106 170-280 251-392 (450)
234 1yub_A Ermam, rRNA methyltrans 98.6 1.2E-08 4.3E-13 90.0 2.9 102 168-275 19-144 (245)
235 2igt_A SAM dependent methyltra 98.6 1.1E-07 3.7E-12 87.8 7.8 91 179-275 153-271 (332)
236 2xyq_A Putative 2'-O-methyl tr 98.5 1.7E-07 5.7E-12 84.7 8.4 116 177-330 61-195 (290)
237 2h1r_A Dimethyladenosine trans 98.5 1.2E-07 4.2E-12 86.2 7.5 95 167-265 31-151 (299)
238 1sqg_A SUN protein, FMU protei 98.5 2E-07 6.7E-12 89.2 9.0 106 170-280 238-377 (429)
239 1wy7_A Hypothetical protein PH 98.5 3.1E-07 1.1E-11 78.4 8.5 84 178-263 48-141 (207)
240 1m6e_X S-adenosyl-L-methionnin 98.5 1.5E-06 5.1E-11 80.6 13.3 148 179-330 51-278 (359)
241 3m6w_A RRNA methylase; rRNA me 98.5 2.1E-07 7.2E-12 89.4 7.0 99 177-279 99-231 (464)
242 3k6r_A Putative transferase PH 98.5 1.7E-07 5.9E-12 84.1 5.9 117 177-327 123-252 (278)
243 2frx_A Hypothetical protein YE 98.4 6.5E-07 2.2E-11 86.6 10.1 98 179-280 117-249 (479)
244 3k0b_A Predicted N6-adenine-sp 98.4 4.4E-07 1.5E-11 85.6 8.4 107 167-275 190-349 (393)
245 2efj_A 3,7-dimethylxanthine me 98.4 6.5E-07 2.2E-11 83.7 9.3 147 180-330 53-290 (384)
246 1rjd_A PPM1P, carboxy methyl t 98.4 2.2E-06 7.6E-11 78.9 12.4 142 179-325 97-281 (334)
247 3ldg_A Putative uncharacterize 98.4 1.3E-06 4.5E-11 82.0 10.8 107 167-275 183-342 (384)
248 3gru_A Dimethyladenosine trans 98.4 6.6E-07 2.2E-11 81.0 8.4 87 167-257 39-136 (295)
249 3fut_A Dimethyladenosine trans 98.4 1.1E-06 3.7E-11 78.7 8.8 87 168-258 37-133 (271)
250 3ftd_A Dimethyladenosine trans 98.3 9.2E-07 3.1E-11 78.2 7.5 89 167-257 20-117 (249)
251 3m4x_A NOL1/NOP2/SUN family pr 98.3 4.9E-07 1.7E-11 86.7 6.0 100 177-280 103-237 (456)
252 3ldu_A Putative methylase; str 98.3 1.4E-06 4.9E-11 81.9 8.7 107 167-275 184-343 (385)
253 2as0_A Hypothetical protein PH 98.3 4.3E-07 1.5E-11 85.9 4.9 93 179-275 217-334 (396)
254 1wxx_A TT1595, hypothetical pr 98.3 4E-07 1.4E-11 85.7 4.5 92 179-275 209-324 (382)
255 2okc_A Type I restriction enzy 98.2 7.7E-07 2.6E-11 85.4 5.2 104 168-275 161-306 (445)
256 1qyr_A KSGA, high level kasuga 98.2 1.2E-06 4.2E-11 77.5 5.7 87 167-256 10-111 (252)
257 2yx1_A Hypothetical protein MJ 98.2 9.2E-07 3.2E-11 81.7 4.8 86 178-275 194-290 (336)
258 4dmg_A Putative uncharacterize 98.2 1.5E-06 5.3E-11 81.8 6.2 92 179-275 214-325 (393)
259 3uzu_A Ribosomal RNA small sub 98.2 9.9E-07 3.4E-11 79.3 4.6 65 168-233 32-105 (279)
260 1uwv_A 23S rRNA (uracil-5-)-me 98.2 4.3E-06 1.5E-10 80.0 9.2 95 169-275 277-388 (433)
261 3tqs_A Ribosomal RNA small sub 98.2 1.6E-06 5.6E-11 76.8 5.5 81 167-250 18-111 (255)
262 4gqb_A Protein arginine N-meth 98.1 3.3E-06 1.1E-10 83.7 7.5 122 141-272 323-463 (637)
263 2b78_A Hypothetical protein SM 98.0 2.2E-06 7.6E-11 80.7 4.1 94 178-275 211-330 (385)
264 2jjq_A Uncharacterized RNA met 98.0 6.8E-06 2.3E-10 78.2 7.5 87 179-275 290-386 (425)
265 3c0k_A UPF0064 protein YCCW; P 98.0 2.6E-06 9E-11 80.4 4.5 92 179-275 220-338 (396)
266 2qfm_A Spermine synthase; sper 98.0 2.6E-06 8.9E-11 78.7 4.1 93 179-275 188-313 (364)
267 1m6y_A S-adenosyl-methyltransf 98.0 5.9E-06 2E-10 75.0 5.9 74 168-242 16-106 (301)
268 2r6z_A UPF0341 protein in RSP 98.0 1.4E-05 4.6E-10 71.0 7.8 96 177-280 81-219 (258)
269 3iei_A Leucine carboxyl methyl 98.0 0.00028 9.5E-09 64.8 16.3 185 139-332 48-281 (334)
270 3evf_A RNA-directed RNA polyme 97.9 2.6E-05 8.9E-10 68.9 8.6 103 169-275 65-183 (277)
271 3v97_A Ribosomal RNA large sub 97.9 2.3E-05 8E-10 79.2 9.3 105 167-275 179-346 (703)
272 3o4f_A Spermidine synthase; am 97.9 8.2E-06 2.8E-10 73.4 5.2 94 178-275 82-197 (294)
273 3v97_A Ribosomal RNA large sub 97.9 8.9E-06 3.1E-10 82.3 6.0 93 179-275 539-656 (703)
274 2qy6_A UPF0209 protein YFCK; s 97.9 8.1E-06 2.8E-10 72.4 4.4 125 179-344 60-247 (257)
275 3ua3_A Protein arginine N-meth 97.9 3E-05 1E-09 77.0 8.5 122 141-272 378-530 (745)
276 3bt7_A TRNA (uracil-5-)-methyl 97.7 1.2E-05 4.2E-10 75.1 2.8 83 180-275 214-325 (369)
277 2uyo_A Hypothetical protein ML 97.7 0.00016 5.4E-09 65.8 9.8 138 179-327 102-274 (310)
278 2dul_A N(2),N(2)-dimethylguano 97.6 2.9E-05 9.9E-10 72.7 4.2 87 180-275 48-163 (378)
279 3gcz_A Polyprotein; flavivirus 97.6 7.2E-05 2.5E-09 66.2 6.3 104 167-275 79-200 (282)
280 2b9e_A NOL1/NOP2/SUN domain fa 97.6 0.00024 8.1E-09 64.6 9.0 64 177-240 100-180 (309)
281 2ar0_A M.ecoki, type I restric 97.5 0.00012 4E-09 71.9 6.3 104 168-275 159-311 (541)
282 3axs_A Probable N(2),N(2)-dime 97.3 0.00011 3.7E-09 69.1 3.7 88 179-275 52-157 (392)
283 3eld_A Methyltransferase; flav 97.3 0.001 3.6E-08 59.2 9.2 103 169-275 72-190 (300)
284 4auk_A Ribosomal RNA large sub 97.3 0.00074 2.5E-08 62.4 8.5 91 177-275 209-305 (375)
285 2oyr_A UPF0341 protein YHIQ; a 97.3 0.00059 2E-08 60.3 7.5 74 170-246 78-176 (258)
286 3khk_A Type I restriction-modi 97.2 0.00021 7.2E-09 70.1 4.8 148 167-344 234-446 (544)
287 2k4m_A TR8_protein, UPF0146 pr 97.2 0.00086 2.9E-08 53.4 7.0 80 179-275 35-120 (153)
288 3ll7_A Putative methyltransfer 97.0 0.00031 1.1E-08 66.1 3.3 61 179-241 93-170 (410)
289 3s1s_A Restriction endonucleas 97.0 0.0014 4.9E-08 66.2 8.1 94 179-275 321-464 (878)
290 3lkd_A Type I restriction-modi 97.0 0.0025 8.5E-08 62.4 9.7 93 179-275 221-357 (542)
291 3c6k_A Spermine synthase; sper 97.0 0.00042 1.4E-08 64.2 3.8 93 179-275 205-330 (381)
292 2zwa_A Leucine carboxyl methyl 96.9 0.011 3.8E-07 59.7 14.2 143 179-332 107-309 (695)
293 2px2_A Genome polyprotein [con 96.9 0.00059 2E-08 59.5 3.5 104 167-275 62-182 (269)
294 1wg8_A Predicted S-adenosylmet 96.8 0.0014 4.7E-08 58.2 5.3 61 167-230 11-77 (285)
295 3vyw_A MNMC2; tRNA wobble urid 96.6 0.0055 1.9E-07 55.2 7.7 124 180-344 97-260 (308)
296 3p8z_A Mtase, non-structural p 96.5 0.0045 1.5E-07 53.2 6.6 97 167-265 67-179 (267)
297 3lkz_A Non-structural protein 96.5 0.01 3.4E-07 52.7 9.0 104 167-275 83-203 (321)
298 2vz8_A Fatty acid synthase; tr 96.4 0.0012 4.3E-08 75.4 3.3 150 180-343 1241-1406(2512)
299 3tka_A Ribosomal RNA small sub 96.0 0.0099 3.4E-07 54.0 6.0 63 167-230 46-115 (347)
300 3cvo_A Methyltransferase-like 95.9 0.042 1.4E-06 46.4 9.2 88 177-279 28-155 (202)
301 2wk1_A NOVP; transferase, O-me 95.4 0.024 8.1E-07 50.5 6.2 88 180-275 107-242 (282)
302 1i4w_A Mitochondrial replicati 95.3 0.023 8E-07 52.3 6.2 51 180-230 59-116 (353)
303 4fzv_A Putative methyltransfer 95.3 0.018 6E-07 53.3 5.3 100 177-280 146-287 (359)
304 2zig_A TTHA0409, putative modi 94.3 0.035 1.2E-06 49.8 4.5 50 166-219 224-274 (297)
305 3ufb_A Type I restriction-modi 94.0 0.21 7.1E-06 48.6 9.4 105 167-275 206-361 (530)
306 3r24_A NSP16, 2'-O-methyl tran 93.9 0.11 3.6E-06 46.2 6.5 92 177-275 107-216 (344)
307 3mq0_A Transcriptional repress 93.2 0.0061 2.1E-07 54.3 -2.8 56 38-101 35-91 (275)
308 3r4k_A Transcriptional regulat 93.2 0.0082 2.8E-07 53.0 -1.9 56 38-101 11-68 (260)
309 2g7u_A Transcriptional regulat 92.8 0.011 3.8E-07 51.9 -1.6 56 38-101 19-74 (257)
310 2heo_A Z-DNA binding protein 1 92.6 0.0079 2.7E-07 41.2 -2.2 54 34-96 12-66 (67)
311 2ia2_A Putative transcriptiona 92.5 0.0096 3.3E-07 52.6 -2.5 56 38-101 26-81 (265)
312 3iht_A S-adenosyl-L-methionine 91.8 0.94 3.2E-05 36.2 8.5 119 152-279 16-149 (174)
313 3p9c_A Caffeic acid O-methyltr 91.6 0.11 3.8E-06 47.9 3.5 71 4-74 158-238 (364)
314 3reo_A (ISO)eugenol O-methyltr 91.5 0.14 4.8E-06 47.2 4.1 72 3-74 159-240 (368)
315 2xrn_A HTH-type transcriptiona 91.4 0.019 6.4E-07 50.0 -1.8 56 38-101 11-68 (241)
316 3cuo_A Uncharacterized HTH-typ 91.2 0.025 8.4E-07 41.4 -1.1 62 28-99 20-85 (99)
317 4a6d_A Hydroxyindole O-methylt 90.4 0.29 1E-05 44.8 5.2 70 7-76 140-218 (353)
318 1xmk_A Double-stranded RNA-spe 90.2 0.014 4.8E-07 41.3 -3.0 55 38-101 16-74 (79)
319 1y0u_A Arsenical resistance op 89.7 0.025 8.7E-07 41.4 -2.2 62 28-101 27-88 (96)
320 1mkm_A ICLR transcriptional re 89.7 0.023 8E-07 49.6 -2.8 55 38-100 13-68 (249)
321 2o0y_A Transcriptional regulat 89.4 0.027 9.3E-07 49.5 -2.6 55 38-100 28-83 (260)
322 2kko_A Possible transcriptiona 88.5 0.11 3.7E-06 39.0 0.6 63 26-99 19-85 (108)
323 2y75_A HTH-type transcriptiona 88.4 0.11 3.7E-06 40.3 0.5 47 47-100 24-73 (129)
324 1qbj_A Protein (double-strande 88.4 0.028 9.5E-07 40.0 -2.7 63 30-100 8-74 (81)
325 1zkd_A DUF185; NESG, RPR58, st 88.0 1.2 4E-05 41.4 7.3 63 148-215 54-123 (387)
326 3jth_A Transcription activator 87.7 0.056 1.9E-06 39.6 -1.5 61 28-99 19-83 (98)
327 1ub9_A Hypothetical protein PH 87.6 0.031 1.1E-06 40.9 -3.0 64 27-100 11-81 (100)
328 1g60_A Adenine-specific methyl 87.6 0.66 2.3E-05 40.4 5.2 50 166-219 201-251 (260)
329 1u2w_A CADC repressor, cadmium 87.4 0.081 2.8E-06 40.7 -0.8 63 27-99 37-103 (122)
330 3f6o_A Probable transcriptiona 86.9 0.071 2.4E-06 40.7 -1.4 63 27-100 13-79 (118)
331 3lst_A CALO1 methyltransferase 86.8 0.35 1.2E-05 44.1 3.1 71 4-74 142-221 (348)
332 2hzt_A Putative HTH-type trans 86.4 0.22 7.4E-06 37.2 1.2 54 38-101 19-80 (107)
333 3pqk_A Biofilm growth-associat 86.4 0.074 2.5E-06 39.3 -1.5 62 27-99 18-83 (102)
334 3i53_A O-methyltransferase; CO 86.0 0.36 1.2E-05 43.6 2.7 73 4-76 127-208 (332)
335 2oqg_A Possible transcriptiona 85.9 0.092 3.1E-06 39.4 -1.2 62 28-100 17-82 (114)
336 3pvc_A TRNA 5-methylaminomethy 85.7 0.72 2.5E-05 46.2 4.9 32 180-211 59-102 (689)
337 1r1u_A CZRA, repressor protein 85.4 0.14 4.7E-06 38.2 -0.4 62 27-99 21-86 (106)
338 3lwf_A LIN1550 protein, putati 85.4 0.18 6.2E-06 40.7 0.3 47 48-101 43-92 (159)
339 4a5n_A Uncharacterized HTH-typ 85.4 0.27 9.3E-06 38.3 1.3 47 49-102 39-93 (131)
340 1qgp_A Protein (double strande 85.3 0.12 4.2E-06 36.2 -0.7 56 34-97 16-75 (77)
341 2fu4_A Ferric uptake regulatio 85.1 0.084 2.9E-06 37.3 -1.7 48 34-90 19-72 (83)
342 3ps9_A TRNA 5-methylaminomethy 84.9 1.1 3.6E-05 44.9 5.7 31 181-211 68-110 (676)
343 3fwz_A Inner membrane protein 84.6 3.9 0.00013 31.5 7.9 85 181-275 8-104 (140)
344 3t8r_A Staphylococcus aureus C 83.8 0.21 7.1E-06 39.6 -0.1 47 48-101 27-76 (143)
345 2qvo_A Uncharacterized protein 83.7 0.17 5.7E-06 36.8 -0.6 46 49-101 30-79 (95)
346 2py6_A Methyltransferase FKBM; 83.5 1.2 4.2E-05 41.6 5.1 40 178-217 225-267 (409)
347 1oyi_A Double-stranded RNA-bin 83.0 0.08 2.8E-06 37.6 -2.4 53 38-100 22-77 (82)
348 3k69_A Putative transcription 82.9 0.37 1.3E-05 39.0 1.1 47 48-101 27-76 (162)
349 1fp1_D Isoliquiritigenin 2'-O- 82.8 1.1 3.8E-05 41.1 4.5 72 3-74 165-246 (372)
350 2jsc_A Transcriptional regulat 82.8 0.11 3.6E-06 39.7 -2.1 61 28-99 17-81 (118)
351 1zg3_A Isoflavanone 4'-O-methy 82.7 0.55 1.9E-05 42.9 2.4 71 4-74 148-230 (358)
352 1r7j_A Conserved hypothetical 82.7 0.11 3.6E-06 38.2 -2.0 45 50-101 21-65 (95)
353 3gwz_A MMCR; methyltransferase 82.7 0.72 2.5E-05 42.3 3.2 75 4-78 160-243 (369)
354 1fp2_A Isoflavone O-methyltran 82.4 0.75 2.6E-05 41.9 3.2 71 4-74 145-225 (352)
355 3ech_A MEXR, multidrug resista 82.3 0.14 4.7E-06 40.0 -1.7 60 32-101 37-103 (142)
356 3f6v_A Possible transcriptiona 81.6 0.15 5.1E-06 40.8 -1.7 63 27-100 53-119 (151)
357 1tbx_A ORF F-93, hypothetical 81.5 0.092 3.2E-06 38.4 -2.8 55 38-101 13-75 (99)
358 2pg4_A Uncharacterized protein 81.4 0.25 8.7E-06 35.8 -0.4 46 49-101 30-81 (95)
359 3eco_A MEPR; mutlidrug efflux 80.9 0.094 3.2E-06 40.7 -3.1 61 33-101 32-99 (139)
360 1r1t_A Transcriptional repress 80.6 0.24 8.2E-06 38.0 -0.8 61 28-99 42-106 (122)
361 3hsr_A HTH-type transcriptiona 80.4 0.11 3.7E-06 40.6 -2.9 59 33-101 37-102 (140)
362 1ylf_A RRF2 family protein; st 80.3 0.29 1E-05 38.9 -0.4 47 48-101 29-77 (149)
363 2ip2_A Probable phenazine-spec 80.3 1.1 3.9E-05 40.2 3.5 68 4-73 127-203 (334)
364 2k02_A Ferrous iron transport 80.2 0.15 5.2E-06 36.6 -1.9 44 38-90 7-50 (87)
365 3g7u_A Cytosine-specific methy 80.1 6.9 0.00024 36.0 8.8 92 182-281 4-122 (376)
366 3bro_A Transcriptional regulat 79.9 0.12 4E-06 40.2 -2.8 60 34-101 36-102 (141)
367 2x4h_A Hypothetical protein SS 79.7 0.19 6.4E-06 39.2 -1.7 46 49-101 31-76 (139)
368 3b73_A PHIH1 repressor-like pr 79.6 0.05 1.7E-06 41.2 -4.9 58 34-101 15-75 (111)
369 1z7u_A Hypothetical protein EF 78.7 0.28 9.4E-06 36.9 -1.0 54 38-101 27-88 (112)
370 3tos_A CALS11; methyltransfera 78.6 2 6.8E-05 37.4 4.4 89 180-275 70-216 (257)
371 2htj_A P fimbrial regulatory p 78.6 0.2 6.7E-06 35.3 -1.7 43 38-89 5-47 (81)
372 3deu_A Transcriptional regulat 78.5 0.16 5.4E-06 41.1 -2.6 59 34-101 55-120 (166)
373 2fsw_A PG_0823 protein; alpha- 78.0 0.35 1.2E-05 36.0 -0.6 54 38-101 30-91 (107)
374 2jt1_A PEFI protein; solution 77.9 0.34 1.1E-05 34.0 -0.7 35 49-90 24-58 (77)
375 3bja_A Transcriptional regulat 77.9 0.16 5.4E-06 39.3 -2.7 59 33-101 34-99 (139)
376 3l9w_A Glutathione-regulated p 77.1 7.7 0.00026 36.2 8.3 86 181-275 5-101 (413)
377 1xn7_A Hypothetical protein YH 76.9 0.17 5.9E-06 35.6 -2.4 43 38-89 7-49 (78)
378 3r0a_A Putative transcriptiona 76.6 0.21 7.1E-06 38.4 -2.3 51 31-90 25-76 (123)
379 1g55_A DNA cytosine methyltran 76.6 5.3 0.00018 36.2 6.8 94 181-280 3-121 (343)
380 1on2_A Transcriptional regulat 76.4 0.25 8.6E-06 38.6 -1.9 46 49-101 22-68 (142)
381 3u2r_A Regulatory protein MARR 76.1 0.44 1.5E-05 38.3 -0.5 60 34-101 48-114 (168)
382 3oop_A LIN2960 protein; protei 75.6 0.33 1.1E-05 37.7 -1.4 59 33-101 38-103 (143)
383 3cdh_A Transcriptional regulat 74.9 0.17 5.9E-06 40.0 -3.3 59 33-101 44-109 (155)
384 3tgn_A ADC operon repressor AD 74.7 0.19 6.5E-06 39.2 -3.1 57 34-101 40-103 (146)
385 3dp7_A SAM-dependent methyltra 74.6 1.9 6.5E-05 39.4 3.3 81 3-84 133-226 (363)
386 2lnb_A Z-DNA-binding protein 1 74.1 0.23 7.8E-06 34.4 -2.3 51 38-96 24-75 (80)
387 3k0l_A Repressor protein; heli 74.0 0.54 1.9E-05 37.5 -0.5 59 33-101 47-112 (162)
388 4aik_A Transcriptional regulat 74.0 0.68 2.3E-05 36.7 0.1 56 38-101 36-98 (151)
389 2dk5_A DNA-directed RNA polyme 73.9 0.26 9E-06 35.7 -2.2 48 34-89 22-69 (91)
390 3df8_A Possible HXLR family tr 73.7 0.4 1.4E-05 36.0 -1.3 57 34-101 29-91 (111)
391 2fbh_A Transcriptional regulat 73.7 0.63 2.1E-05 36.1 -0.2 58 34-101 39-104 (146)
392 3i71_A Ethanolamine utilizatio 73.5 0.67 2.3E-05 30.0 -0.1 45 48-99 17-61 (68)
393 1yyv_A Putative transcriptiona 73.0 0.46 1.6E-05 36.9 -1.1 54 38-101 40-101 (131)
394 3fm5_A Transcriptional regulat 72.7 0.12 4.2E-06 40.7 -4.6 60 33-101 40-106 (150)
395 2nnn_A Probable transcriptiona 72.5 0.62 2.1E-05 35.8 -0.5 58 34-101 40-104 (140)
396 2lkp_A Transcriptional regulat 72.5 0.71 2.4E-05 34.8 -0.1 54 26-90 26-79 (119)
397 3cjn_A Transcriptional regulat 72.5 0.22 7.5E-06 39.7 -3.2 58 34-101 54-118 (162)
398 2frh_A SARA, staphylococcal ac 72.4 0.29 9.9E-06 37.6 -2.4 60 34-101 39-105 (127)
399 3bj6_A Transcriptional regulat 71.8 0.2 6.9E-06 39.4 -3.6 59 33-101 41-106 (152)
400 1lj9_A Transcriptional regulat 71.8 0.23 8E-06 38.6 -3.2 59 33-101 30-95 (144)
401 3bpv_A Transcriptional regulat 71.7 0.6 2.1E-05 35.8 -0.7 58 34-101 31-95 (138)
402 2c7p_A Modification methylase 71.5 13 0.00045 33.4 8.1 118 181-328 12-149 (327)
403 2gxg_A 146AA long hypothetical 71.4 0.61 2.1E-05 36.2 -0.8 59 32-101 37-102 (146)
404 3f3x_A Transcriptional regulat 70.7 0.27 9.2E-06 38.3 -3.0 59 32-101 37-102 (144)
405 3s2w_A Transcriptional regulat 70.7 0.55 1.9E-05 37.3 -1.2 58 34-101 52-116 (159)
406 2a61_A Transcriptional regulat 70.2 0.69 2.4E-05 35.8 -0.7 59 33-101 34-99 (145)
407 1p6r_A Penicillinase repressor 70.2 0.37 1.2E-05 33.8 -2.1 53 33-91 10-62 (82)
408 2wte_A CSA3; antiviral protein 69.9 0.47 1.6E-05 41.1 -1.9 59 33-101 153-213 (244)
409 1v4r_A Transcriptional repress 69.9 3.6 0.00012 29.9 3.3 42 49-97 34-77 (102)
410 2hr3_A Probable transcriptiona 69.7 0.66 2.3E-05 36.1 -0.9 60 33-101 36-102 (147)
411 4hbl_A Transcriptional regulat 69.7 0.45 1.5E-05 37.4 -1.9 60 32-101 41-107 (149)
412 3g3z_A NMB1585, transcriptiona 69.6 0.44 1.5E-05 37.1 -2.0 61 31-101 30-97 (145)
413 2f2e_A PA1607; transcription f 69.2 0.68 2.3E-05 36.6 -0.9 46 49-101 37-88 (146)
414 2fbi_A Probable transcriptiona 69.2 0.74 2.5E-05 35.4 -0.7 60 32-101 36-102 (142)
415 2pex_A Transcriptional regulat 69.0 0.27 9.4E-06 38.7 -3.4 58 34-101 49-113 (153)
416 2vn2_A DNAD, chromosome replic 68.6 0.44 1.5E-05 36.8 -2.2 35 48-89 50-84 (128)
417 1jgs_A Multiple antibiotic res 68.1 0.71 2.4E-05 35.4 -1.0 58 34-101 36-100 (138)
418 4f3n_A Uncharacterized ACR, CO 68.0 4.9 0.00017 37.7 4.5 57 147-211 113-174 (432)
419 4b8x_A SCO5413, possible MARR- 67.9 0.54 1.8E-05 37.0 -1.8 46 49-101 51-103 (147)
420 2zkz_A Transcriptional repress 67.7 0.82 2.8E-05 33.4 -0.7 62 27-99 22-87 (99)
421 2d1h_A ST1889, 109AA long hypo 67.4 0.95 3.2E-05 33.0 -0.4 35 49-90 36-70 (109)
422 2fa5_A Transcriptional regulat 66.9 0.21 7.3E-06 39.8 -4.5 58 34-101 51-115 (162)
423 2bv6_A MGRA, HTH-type transcri 66.8 0.82 2.8E-05 35.3 -0.9 59 33-101 38-103 (142)
424 1xd7_A YWNA; structural genomi 66.4 0.73 2.5E-05 36.3 -1.3 44 51-101 25-70 (145)
425 3ggo_A Prephenate dehydrogenas 65.8 23 0.00079 31.4 8.4 80 181-265 34-120 (314)
426 3bdd_A Regulatory protein MARR 65.3 0.87 3E-05 35.0 -1.1 60 32-101 31-97 (142)
427 2oo3_A Protein involved in cat 65.3 10 0.00034 33.4 5.7 89 180-275 92-197 (283)
428 3e6m_A MARR family transcripti 65.3 0.65 2.2E-05 37.0 -1.9 59 33-101 54-119 (161)
429 3boq_A Transcriptional regulat 65.3 0.72 2.5E-05 36.5 -1.6 59 34-101 49-114 (160)
430 2nyx_A Probable transcriptiona 65.1 0.85 2.9E-05 36.6 -1.2 58 34-101 47-111 (168)
431 2h09_A Transcriptional regulat 64.9 0.18 6.3E-06 40.1 -5.2 46 49-101 54-100 (155)
432 3nrv_A Putative transcriptiona 64.7 0.58 2E-05 36.5 -2.2 58 34-101 42-106 (148)
433 3jw4_A Transcriptional regulat 64.6 0.39 1.3E-05 37.6 -3.3 60 34-101 43-109 (148)
434 2rdp_A Putative transcriptiona 64.5 0.92 3.2E-05 35.3 -1.1 58 34-101 44-108 (150)
435 2k4b_A Transcriptional regulat 64.2 0.42 1.5E-05 35.2 -2.9 55 31-91 34-88 (99)
436 3nqo_A MARR-family transcripti 63.9 0.88 3E-05 37.4 -1.3 63 31-101 40-109 (189)
437 3qv2_A 5-cytosine DNA methyltr 63.8 8.3 0.00029 34.7 5.1 116 181-327 11-155 (327)
438 3h2s_A Putative NADH-flavin re 63.8 42 0.0014 27.3 9.3 90 183-275 3-103 (224)
439 2v79_A DNA replication protein 63.7 0.73 2.5E-05 36.0 -1.8 35 48-89 50-84 (135)
440 4fx0_A Probable transcriptiona 63.7 0.55 1.9E-05 37.1 -2.5 46 49-101 52-103 (148)
441 2fbk_A Transcriptional regulat 63.4 0.31 1E-05 39.9 -4.3 60 34-101 71-138 (181)
442 2qww_A Transcriptional regulat 62.9 0.79 2.7E-05 35.9 -1.7 59 33-101 42-109 (154)
443 2eth_A Transcriptional regulat 62.8 1.1 3.8E-05 35.2 -0.9 59 33-101 45-110 (154)
444 2obp_A Putative DNA-binding pr 62.0 1.2 4E-05 32.6 -0.8 46 49-101 36-86 (96)
445 3ew7_A LMO0794 protein; Q8Y8U8 61.6 27 0.00092 28.3 7.7 91 183-275 3-101 (221)
446 1s3j_A YUSO protein; structura 61.5 0.99 3.4E-05 35.4 -1.4 58 34-101 39-103 (155)
447 1pl8_A Human sorbitol dehydrog 61.3 45 0.0016 29.8 9.7 90 177-278 169-274 (356)
448 1sfx_A Conserved hypothetical 61.0 1.6 5.5E-05 31.7 -0.2 50 31-90 19-68 (109)
449 1boo_A Protein (N-4 cytosine-s 60.8 8.4 0.00029 34.5 4.5 49 167-219 242-291 (323)
450 3hrs_A Metalloregulator SCAR; 60.7 0.94 3.2E-05 38.3 -1.7 46 49-101 20-66 (214)
451 1q1h_A TFE, transcription fact 60.1 0.41 1.4E-05 35.6 -3.7 49 32-89 18-66 (110)
452 3kp7_A Transcriptional regulat 59.5 0.91 3.1E-05 35.5 -1.9 60 31-101 37-105 (151)
453 3qwb_A Probable quinone oxidor 59.5 31 0.0011 30.5 8.2 88 177-278 146-248 (334)
454 1p4x_A Staphylococcal accessor 59.5 0.57 2E-05 40.7 -3.4 60 34-101 160-226 (250)
455 3b1f_A Putative prephenate deh 58.7 42 0.0014 28.9 8.7 80 181-265 7-93 (290)
456 2o03_A Probable zinc uptake re 58.7 0.97 3.3E-05 34.9 -1.9 48 34-90 13-65 (131)
457 1tw3_A COMT, carminomycin 4-O- 58.6 6.7 0.00023 35.4 3.5 71 4-74 141-220 (360)
458 1f8f_A Benzyl alcohol dehydrog 58.4 5.7 0.00019 36.2 3.0 91 177-279 188-291 (371)
459 1qzz_A RDMB, aclacinomycin-10- 57.3 7.6 0.00026 35.2 3.7 71 4-74 140-219 (374)
460 1e3j_A NADP(H)-dependent ketos 56.9 39 0.0013 30.1 8.4 89 177-278 166-272 (352)
461 4dvj_A Putative zinc-dependent 56.5 13 0.00045 33.6 5.2 86 179-275 171-269 (363)
462 3mag_A VP39; methylated adenin 56.4 5.7 0.00019 35.1 2.4 33 179-211 60-96 (307)
463 1sfu_A 34L protein; protein/Z- 55.7 2.5 8.5E-05 29.2 0.1 41 49-96 29-72 (75)
464 1ku9_A Hypothetical protein MJ 55.3 1.9 6.3E-05 33.4 -0.8 44 38-89 31-74 (152)
465 1kol_A Formaldehyde dehydrogen 54.8 51 0.0018 29.9 9.0 96 177-279 183-302 (398)
466 2g1u_A Hypothetical protein TM 54.7 70 0.0024 24.5 10.6 88 179-275 18-117 (155)
467 3l4b_C TRKA K+ channel protien 53.8 46 0.0016 27.3 7.8 83 183-275 3-98 (218)
468 3m6i_A L-arabinitol 4-dehydrog 53.7 58 0.002 29.1 9.1 94 172-278 173-284 (363)
469 3ius_A Uncharacterized conserv 53.5 1E+02 0.0035 26.0 12.6 89 181-275 6-101 (286)
470 2hwk_A Helicase NSP2; rossman 52.9 18 0.0006 31.9 4.9 104 195-330 156-279 (320)
471 2zig_A TTHA0409, putative modi 52.6 10 0.00035 33.4 3.6 53 220-275 21-96 (297)
472 2fxa_A Protease production reg 52.4 1.5 5.2E-05 36.6 -1.8 58 34-101 50-114 (207)
473 4eez_A Alcohol dehydrogenase 1 51.9 24 0.00083 31.4 6.1 88 177-275 161-262 (348)
474 2o0m_A Transcriptional regulat 51.6 3.1 0.00011 37.8 0.0 59 34-102 22-80 (345)
475 2aef_A Calcium-gated potassium 51.5 78 0.0027 26.1 9.0 85 180-275 9-104 (234)
476 1bja_A Transcription regulator 51.5 1.2 3.9E-05 32.5 -2.3 55 38-101 21-76 (95)
477 3r6d_A NAD-dependent epimerase 51.4 91 0.0031 25.2 9.3 132 182-331 7-154 (221)
478 1z91_A Organic hydroperoxide r 51.3 0.93 3.2E-05 35.2 -3.2 58 34-101 42-106 (147)
479 2fe3_A Peroxide operon regulat 51.3 1.7 5.8E-05 34.2 -1.6 56 31-90 21-76 (145)
480 2w25_A Probable transcriptiona 51.1 1.3 4.5E-05 34.8 -2.3 47 34-90 9-55 (150)
481 2cfx_A HTH-type transcriptiona 50.7 1.5 5.1E-05 34.3 -2.0 47 34-90 7-53 (144)
482 3s2e_A Zinc-containing alcohol 50.4 31 0.0011 30.6 6.6 87 177-275 164-262 (340)
483 3uko_A Alcohol dehydrogenase c 50.2 39 0.0013 30.6 7.3 90 177-278 191-296 (378)
484 2p4w_A Transcriptional regulat 50.2 1.9 6.6E-05 36.1 -1.5 63 28-101 11-82 (202)
485 1uuf_A YAHK, zinc-type alcohol 49.9 7.4 0.00025 35.5 2.3 87 177-275 192-287 (369)
486 1eg2_A Modification methylase 49.8 16 0.00055 32.7 4.4 53 166-222 231-288 (319)
487 3two_A Mannitol dehydrogenase; 49.6 18 0.00061 32.4 4.8 86 177-275 174-264 (348)
488 3cta_A Riboflavin kinase; stru 49.5 2.2 7.4E-05 36.3 -1.3 46 49-101 27-76 (230)
489 3c85_A Putative glutathione-re 49.1 95 0.0032 24.4 8.9 88 180-275 39-138 (183)
490 3l4g_A Phenylalanyl-tRNA synth 48.5 3.7 0.00013 39.3 0.0 67 33-108 6-77 (508)
491 2g5c_A Prephenate dehydrogenas 48.3 79 0.0027 26.9 8.8 85 182-274 3-94 (281)
492 3vrd_B FCCB subunit, flavocyto 48.3 14 0.00049 33.6 4.0 32 180-211 2-35 (401)
493 4e2x_A TCAB9; kijanose, tetron 47.7 96 0.0033 28.2 9.7 86 179-275 318-409 (416)
494 2p5v_A Transcriptional regulat 47.2 1.9 6.4E-05 34.4 -2.0 49 33-91 11-59 (162)
495 2dbb_A Putative HTH-type trans 47.1 1.7 5.7E-05 34.2 -2.3 49 33-91 10-58 (151)
496 2pn6_A ST1022, 150AA long hypo 47.1 1.2 4.2E-05 35.0 -3.1 45 34-88 5-49 (150)
497 4dcm_A Ribosomal RNA large sub 46.9 73 0.0025 28.9 8.6 86 179-275 38-135 (375)
498 4ej6_A Putative zinc-binding d 46.6 10 0.00035 34.5 2.7 91 177-279 180-286 (370)
499 2ia0_A Putative HTH-type trans 46.5 2.4 8.2E-05 34.3 -1.5 48 33-90 18-65 (171)
500 1okr_A MECI, methicillin resis 46.4 2.4 8.3E-05 31.8 -1.4 59 38-101 15-78 (123)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=3.1e-56 Score=419.30 Aligned_cols=308 Identities=18% Similarity=0.168 Sum_probs=274.7
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----ee
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MY 93 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y 93 (345)
++..||+.+++|++|++|| |||+| .+++.|+|++|||+++++ +++.+.|+||+|++.|++++..+ .|
T Consensus 14 ~l~~Gf~~s~~L~aa~eLg-lfd~L-~~~~~p~t~~eLA~~~g~-------~~~~l~rlLr~L~~~gll~~~~~~~~~~y 84 (353)
T 4a6d_A 14 DYANGFMVSQVLFAACELG-VFDLL-AEAPGPLDVAAVAAGVRA-------SAHGTELLLDICVSLKLLKVETRGGKAFY 84 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHH-HHSSSCBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHcC-HHHHH-hcCCCCCCHHHHHHhhCc-------CHHHHHHHHHHHHHCCCEEEeccCcccee
Confidence 6889999999999999999 99999 544458999999999999 89999999999999999976543 79
Q ss_pred ecCCCccc-cccchhhhhhhhhccccchhhhhchHHH---HHH----HhHhcC---cchhhhhccCchhHHHHHHHHHHh
Q 044482 94 NLFPGAKE-RTMEEFNALAIGAGFGTIKVICRAYCYW---VIE----FYKTMH---IMDCIYLTMLPMMLNLFNQSMQNH 162 (345)
Q Consensus 94 ~~t~~s~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~----~~~~~g---~~~~~~~~~~~~~~~~f~~~m~~~ 162 (345)
+||++++. +.+++|.++++++.+.. +..++.|..| +++ |...+| .++|+++.++|+....|+++|...
T Consensus 85 ~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~ 163 (353)
T 4a6d_A 85 RNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQEV 163 (353)
T ss_dssp EECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTT
T ss_pred eCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 99999987 88888888888887754 4567888887 333 666666 368899999999999999999999
Q ss_pred hHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---------CceEEeccCCc-CC
Q 044482 163 TAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---------CVEHVEGDMFV-NV 232 (345)
Q Consensus 163 ~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---------ri~~~~gd~~~-~~ 232 (345)
+....+.+++.++ |+...+|||||||+|.++..++++||+++++++|+|+|++.++ ||+++.||||+ +.
T Consensus 164 ~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~ 242 (353)
T 4a6d_A 164 WSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL 242 (353)
T ss_dssp HHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCC
T ss_pred HHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCC
Confidence 8888889999999 9999999999999999999999999999999999999988765 89999999998 45
Q ss_pred CCCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCH
Q 044482 233 PSGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTA 312 (345)
Q Consensus 233 p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~ 312 (345)
|++|+|+++++||+|+|++|.+||++++++|+| ||+++|+ |.+.+++...+. ....+|+.||..+ +|++||.
T Consensus 243 ~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~p---gg~lli~-e~~~~~~~~~~~---~~~~~dl~ml~~~-~g~ert~ 314 (353)
T 4a6d_A 243 PEADLYILARVLHDWADGKCSHLLERIYHTCKP---GGGILVI-ESLLDEDRRGPL---LTQLYSLNMLVQT-EGQERTP 314 (353)
T ss_dssp CCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCT---TCEEEEE-ECCCCTTSCCCH---HHHHHHHHHHHSS-SCCCCCH
T ss_pred CCceEEEeeeecccCCHHHHHHHHHHHHhhCCC---CCEEEEE-EeeeCCCCCCCH---HHHHHHHHHHHhC-CCcCCCH
Confidence 566999999999999999999999999999999 9999999 999987655432 3466899999987 9999999
Q ss_pred HHHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 313 GEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 313 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
+||+++|++|||+++++++.++..++|+|+|-
T Consensus 315 ~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArKg 346 (353)
T 4a6d_A 315 THYHMLLSSAGFRDFQFKKTGAIYDAILARKG 346 (353)
T ss_dssp HHHHHHHHHHTCEEEEEECCSSSCEEEEEECC
T ss_pred HHHHHHHHHCCCceEEEEEcCCceEEEEEEec
Confidence 99999999999999999999888999999984
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=2.7e-52 Score=393.97 Aligned_cols=319 Identities=36% Similarity=0.556 Sum_probs=274.7
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE--------
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID-------- 89 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~-------- 89 (345)
++..+|+.+++|++|++|| |||.|...|+.|+|++|||+++++.. +++.+..++|+||+|++.|+|+++
T Consensus 26 ~l~~~~~~~~~l~~a~~Lg-ifd~L~~~g~~~~t~~eLA~~~g~~~--~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~ 102 (364)
T 3p9c_A 26 QLASSSVLPMTLKNAIELG-LLEILVAAGGKSLTPTEVAAKLPSAA--NPEAPDMVDRILRLLASYNVVTCLVEEGKDGR 102 (364)
T ss_dssp HHTTTTHHHHHHHHHHHHT-HHHHHHHTTTCCBCHHHHHHTTTCTT--CTTHHHHHHHHHHHHHHTTSEEEEEEECSSSC
T ss_pred HHHHhHHHHHHHHHHHHCC-hHHHHhhcCCCCCCHHHHHHhcCCCC--CccchhhHHHHHHHHHhCCCEEEeccccCCCC
Confidence 4667788999999999999 99999443334799999999999411 111233999999999999999987
Q ss_pred -eEeeecCCCcccc-ccchhhhhhhhhccccchhhhhchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHHHH
Q 044482 90 -VVMYNLFPGAKER-TMEEFNALAIGAGFGTIKVICRAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQ 160 (345)
Q Consensus 90 -~~~y~~t~~s~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 160 (345)
+++|++|+.++.+ .++++.++++++.+..++..+..|.+| +++ |+..+|.++|+|+.++|+..+.|+++|.
T Consensus 103 ~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 182 (364)
T 3p9c_A 103 LSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMK 182 (364)
T ss_dssp EEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHHHHHHHHHHHH
Confidence 4689999999885 444566899888776667778899998 333 7778899999999999999999999999
Q ss_pred HhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---CceEEeccCCcCCCCCCE
Q 044482 161 NHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---CVEHVEGDMFVNVPSGQA 237 (345)
Q Consensus 161 ~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---ri~~~~gd~~~~~p~~D~ 237 (345)
..+....+.+++.++.+++..+|||||||+|.++..+++++|+++++++|+|++++.++ |++++.+|+++++|++|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~ 262 (364)
T 3p9c_A 183 NHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDT 262 (364)
T ss_dssp HHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSE
T ss_pred HhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCE
Confidence 98888788899988767888999999999999999999999999999999999999888 899999999998887799
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHH
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKA 317 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ 317 (345)
|+++++||+|+++++.++|++++++|+| ||+|+|+ |.+.++.............+|+.|+....+|++||.+||++
T Consensus 263 v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~-e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ 338 (364)
T 3p9c_A 263 ILMKWILHDWSDQHCATLLKNCYDALPA---HGKVVLV-QCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQA 338 (364)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEE-ECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHH
T ss_pred EEehHHhccCCHHHHHHHHHHHHHHcCC---CCEEEEE-EeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHH
Confidence 9999999999999999999999999999 9999999 99988765443222334568888885434899999999999
Q ss_pred HHHHCCCCceEEEecCCceEEEEEEc
Q 044482 318 LAMAAGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 318 ll~~aGf~~~~~~~~~~~~~vi~~~k 343 (345)
+|++|||+.+++.+.++..++||++|
T Consensus 339 ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 339 LARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp HHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHCCCceEEEEEcCCceEEEEEeC
Confidence 99999999999999999999999986
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=1.4e-51 Score=389.71 Aligned_cols=320 Identities=37% Similarity=0.541 Sum_probs=276.7
Q ss_pred HHHHHHHHHHHHhhhhccccccceeecc-C-CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE------
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVA-G-GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID------ 89 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~-g-g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~------ 89 (345)
++..+|+.+++|++|++|| |||.|... | +.+.|++|||++++.. +++++..++|+||+|++.|+|++.
T Consensus 27 ~l~~~~~~~~~l~~a~~Lg-lfd~L~~~~gp~~~~t~~eLA~~~~~~---~~~~~~~l~rlLr~L~~~gll~~~~~~~~~ 102 (368)
T 3reo_A 27 QLASAAVLPMALKAAIELD-VLEIMAKSVPPSGYISPAEIAAQLPTT---NPEAPVMLDRVLRLLASYSVVTYTLRELPS 102 (368)
T ss_dssp HHHTTTHHHHHHHHHHHTT-HHHHHHHHCCTTCCBCHHHHHTTSSCC---CTTHHHHHHHHHHHHHHTTSEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHCC-chhHHhhcCCCCCCcCHHHHHHhcCcC---CCcchhhHHHHHHHHHhCCCeEEecccCCC
Confidence 4677889999999999999 99999432 3 3469999999999831 122345999999999999999986
Q ss_pred ---eEeeecCCCccc-cccchhhhhhhhhccccchhhhhchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHH
Q 044482 90 ---VVMYNLFPGAKE-RTMEEFNALAIGAGFGTIKVICRAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQS 158 (345)
Q Consensus 90 ---~~~y~~t~~s~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~ 158 (345)
+++|++|+.++. +.++++.++++++.+..++..+..|.+| +++ |+..+|.++|+|+.++|+..+.|+++
T Consensus 103 g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 182 (368)
T 3reo_A 103 GKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKG 182 (368)
T ss_dssp SCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCHHHHHHHHHH
T ss_pred CcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCHHHHHHHHHH
Confidence 368999999988 4555567899888776667778899988 333 77788999999999999999999999
Q ss_pred HHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---CceEEeccCCcCCCCC
Q 044482 159 MQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---CVEHVEGDMFVNVPSG 235 (345)
Q Consensus 159 m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---ri~~~~gd~~~~~p~~ 235 (345)
|...+....+.+++.++.+++..+|||||||+|.++..+++++|+++++++|+|++++.++ |++++.+|+++++|++
T Consensus 183 m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~ 262 (368)
T 3reo_A 183 MSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKG 262 (368)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCC
T ss_pred HHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCCCCCCC
Confidence 9998888788899888767888999999999999999999999999999999999999888 8999999999988877
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|+|+++++||+|+++++.++|++++++|+| ||+|+|+ |.+.++....+...+....+|+.|+..+.+|++||.+||
T Consensus 263 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~ 338 (368)
T 3reo_A 263 DAIFIKWICHDWSDEHCLKLLKNCYAALPD---HGKVIVA-EYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEF 338 (368)
T ss_dssp SEEEEESCGGGBCHHHHHHHHHHHHHHSCT---TCEEEEE-ECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHH
T ss_pred CEEEEechhhcCCHHHHHHHHHHHHHHcCC---CCEEEEE-EeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHH
Confidence 999999999999999999999999999999 9999999 999887654433333446688888875448999999999
Q ss_pred HHHHHHCCCCceEEEecCCceEEEEEEcCC
Q 044482 316 KALAMAAGFGTIKVICRSYCYWVIEFYKPK 345 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~~~~~~vi~~~k~~ 345 (345)
+++|++|||+++++.+..+..++||++|+.
T Consensus 339 ~~ll~~AGF~~v~~~~~~~~~~vie~~k~~ 368 (368)
T 3reo_A 339 QALAMASGFRGFKVASCAFNTYVMEFLKTA 368 (368)
T ss_dssp HHHHHHTTCCEEEEEEEETTEEEEEEECCC
T ss_pred HHHHHHCCCeeeEEEEeCCCcEEEEEEeCC
Confidence 999999999999999999899999999863
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=1.1e-48 Score=367.53 Aligned_cols=310 Identities=17% Similarity=0.171 Sum_probs=272.6
Q ss_pred hcCHHHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEee
Q 044482 14 SKDARLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMY 93 (345)
Q Consensus 14 ~~~~~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y 93 (345)
..--++..+|+.++++++|++|| |||.| .+| +.|++|||+++++ +++.++|+||+|++.|+|++.+++|
T Consensus 24 ~~l~~~~~~~~~~~~l~~a~~lg-lf~~l-~~g--~~t~~elA~~~g~-------~~~~l~rlLr~l~~~g~l~~~~~~y 92 (348)
T 3lst_A 24 LALYEEAMGYTYAAALRAAAAVG-VADHL-VDG--PRTPAELAAATGT-------DADALRRVLRLLAVRDVVRESDGRF 92 (348)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHT-GGGGG-TTS--CBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-chhHh-hCC--CCCHHHHHHHhCc-------CHHHHHHHHHHHHhCCCEEecCCEE
Confidence 33346788999999999999999 99999 543 7999999999999 7999999999999999999966699
Q ss_pred ecCCCccccccchhhhhhhhhccccchhhhhchHHHH---HH----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHH
Q 044482 94 NLFPGAKERTMEEFNALAIGAGFGTIKVICRAYCYWV---IE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIV 166 (345)
Q Consensus 94 ~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~ 166 (345)
++|+.++.+.++++.++++++.+..++..++.|.+|. ++ |+..+|.++|+|+.++|+..+.|+++|...+...
T Consensus 93 ~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~ 172 (348)
T 3lst_A 93 ALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAE 172 (348)
T ss_dssp EECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred ecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhh
Confidence 9999998877777778888887766666688898883 21 7777888999999999999999999999988887
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC--------CceEEeccCCcCCCCCCEE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP--------CVEHVEGDMFVNVPSGQAI 238 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~--------ri~~~~gd~~~~~p~~D~i 238 (345)
.+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|+++..++ |++++.+|+++++|..|+|
T Consensus 173 ~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v 251 (348)
T 3lst_A 173 HLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVH 251 (348)
T ss_dssp HHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEE
T ss_pred HHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEE
Confidence 888999998 9999999999999999999999999999999999998877432 7999999999888844999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHH
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKAL 318 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~l 318 (345)
+++++||+|+|+++.++|++++++|+| ||+|+|. |.+.++...+. ....+|+.|+... ++++||.++|+++
T Consensus 252 ~~~~vlh~~~d~~~~~~L~~~~~~Lkp---gG~l~i~-e~~~~~~~~~~----~~~~~d~~~~~~~-~~~~~t~~e~~~l 322 (348)
T 3lst_A 252 VLKRILHNWGDEDSVRILTNCRRVMPA---HGRVLVI-DAVVPEGNDAH----QSKEMDFMMLAAR-TGQERTAAELEPL 322 (348)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTCCT---TCEEEEE-ECCBCSSSSCC----HHHHHHHHHHHTT-SCCCCBHHHHHHH
T ss_pred EEehhccCCCHHHHHHHHHHHHHhcCC---CCEEEEE-EeccCCCCCcc----hhhhcChhhhhcC-CCcCCCHHHHHHH
Confidence 999999999999999999999999999 9999999 99887664322 3356788888775 9999999999999
Q ss_pred HHHCCCCceEEEecCCceEEEEEEcC
Q 044482 319 AMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 319 l~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
|+++||+++++.+..+..++|+++|.
T Consensus 323 l~~aGf~~~~~~~~~~~~~vie~~pa 348 (348)
T 3lst_A 323 FTAAGLRLDRVVGTSSVMSIAVGVPA 348 (348)
T ss_dssp HHHTTEEEEEEEECSSSCEEEEEEEC
T ss_pred HHHCCCceEEEEECCCCcEEEEEEeC
Confidence 99999999999997778999999873
No 5
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=2e-48 Score=368.38 Aligned_cols=305 Identities=18% Similarity=0.231 Sum_probs=271.6
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-Ee-eec
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-VM-YNL 95 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-~~-y~~ 95 (345)
++..+|+.+++++++++|+ |||.| .+ | +.|++|||+++++ +++.++|+||+|++.|+|++++ +. |++
T Consensus 44 ~l~~~~~~~~~l~~a~~lg-lf~~l-~~-g-~~t~~eLA~~~g~-------~~~~l~rlLr~L~~~g~l~~~~~~~~y~~ 112 (369)
T 3gwz_A 44 DILQGAWKARAIHVAVELG-VPELL-QE-G-PRTATALAEATGA-------HEQTLRRLLRLLATVGVFDDLGHDDLFAQ 112 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TGGGG-TT-S-CEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSSEECSSTTEEEC
T ss_pred HHHHHHHHHHHHHHHHHCC-hhhhh-cC-C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHhCCCEEEeCCCceEec
Confidence 5778999999999999999 99999 54 3 7999999999999 7999999999999999999864 47 999
Q ss_pred CCCccccccchhhhhhhhhccccchhhhhchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHHHH
Q 044482 96 FPGAKERTMEEFNALAIGAGFGTIKVICRAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMK 168 (345)
Q Consensus 96 t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~ 168 (345)
|++++.|.++++.++++++.+..++..+..|.++ +++ |...+|.++|+|+.++|+..+.|+++|...+....+
T Consensus 113 t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~ 192 (369)
T 3gwz_A 113 NALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAG 192 (369)
T ss_dssp CHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHH
Confidence 9999988777777889888876655567888887 333 777788889999999999999999999998888888
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCcCCCCC-CE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFVNVPSG-QA 237 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~~~p~~-D~ 237 (345)
.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++ |++++.+|+++++|.+ |+
T Consensus 193 ~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~ 271 (369)
T 3gwz_A 193 QVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADV 271 (369)
T ss_dssp HHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSE
T ss_pred HHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceE
Confidence 8999998 8888999999999999999999999999999999998887665 6999999999888855 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHH
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKA 317 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ 317 (345)
|+++++||+|+++++.++|++++++|+| ||+++|. |.+.++...+. ...+|+.|+... ++++||.++|++
T Consensus 272 v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~-e~~~~~~~~~~-----~~~~d~~~~~~~-~g~~~t~~e~~~ 341 (369)
T 3gwz_A 272 YLIKHVLHDWDDDDVVRILRRIATAMKP---DSRLLVI-DNLIDERPAAS-----TLFVDLLLLVLV-GGAERSESEFAA 341 (369)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEE-EEBCCSSCCHH-----HHHHHHHHHHHH-SCCCBCHHHHHH
T ss_pred EEhhhhhccCCHHHHHHHHHHHHHHcCC---CCEEEEE-EeccCCCCCCc-----hhHhhHHHHhhc-CCccCCHHHHHH
Confidence 9999999999999999999999999999 9999999 99887664321 356788888876 999999999999
Q ss_pred HHHHCCCCceEEEe-cCCceEEEEEEcC
Q 044482 318 LAMAAGFGTIKVIC-RSYCYWVIEFYKP 344 (345)
Q Consensus 318 ll~~aGf~~~~~~~-~~~~~~vi~~~k~ 344 (345)
+|+++||+++++.+ ..+..++|+++|.
T Consensus 342 ll~~aGf~~~~~~~~~~~~~svie~~~a 369 (369)
T 3gwz_A 342 LLEKSGLRVERSLPCGAGPVRIVEIRRA 369 (369)
T ss_dssp HHHTTTEEEEEEEECSSSSEEEEEEEEC
T ss_pred HHHHCCCeEEEEEECCCCCcEEEEEEeC
Confidence 99999999999999 5678999999984
No 6
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=1.5e-48 Score=364.08 Aligned_cols=302 Identities=18% Similarity=0.204 Sum_probs=266.7
Q ss_pred HHHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-Eeeec
Q 044482 17 ARLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-VMYNL 95 (345)
Q Consensus 17 ~~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-~~y~~ 95 (345)
-++..+|+.++++++|++|| |||.| .+ | |.|++|||+++++ +++.++|+||+|++.|++++++ +.|.+
T Consensus 10 ~~~~~g~~~~~~l~~a~~lg-lf~~l-~~-g-~~t~~elA~~~~~-------~~~~l~rlLr~l~~~gl~~~~~~~~y~~ 78 (332)
T 3i53_A 10 LRALADLATPMAVRVAATLR-VADHI-AA-G-HRTAAEIASAAGA-------HADSLDRLLRHLVAVGLFTRDGQGVYGL 78 (332)
T ss_dssp HHHHTCCHHHHHHHHHHHHT-HHHHH-HT-T-CCBHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEECTTSBEEE
T ss_pred HHHHHhhHHHHHHHHHHHcC-hHHHH-hc-C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHhCCcEEecCCCeEEc
Confidence 36788999999999999999 99999 54 3 7999999999999 7999999999999999999874 69999
Q ss_pred CCCccccccchhhhhhhhhccccchhhh-hchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHHH
Q 044482 96 FPGAKERTMEEFNALAIGAGFGTIKVIC-RAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVM 167 (345)
Q Consensus 96 t~~s~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~ 167 (345)
|++++.+.++++.++++++.+..++..+ ..|.+| +++ |+..+|.++|+++.++|+..+.|+.+|...+....
T Consensus 79 t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~ 158 (332)
T 3i53_A 79 TEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDY 158 (332)
T ss_dssp CTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhH
Confidence 9999997667777899998877654445 778777 333 77778888999999999999999999999887777
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCcCCCCC-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFVNVPSG-Q 236 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~~~p~~-D 236 (345)
+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.++ |++++.+|+++++|.+ |
T Consensus 159 ~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D 237 (332)
T 3i53_A 159 TGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAG 237 (332)
T ss_dssp TTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCS
T ss_pred HHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCc
Confidence 78888888 8888999999999999999999999999999999999887665 6999999999888844 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHH
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~ 316 (345)
+|+++++||+|+|+++.++|++++++|+| ||+++|. |.+.++. . + ...+|+.|+... ++++||.++|+
T Consensus 238 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~-~-~-----~~~~d~~~~~~~-~~~~~t~~e~~ 305 (332)
T 3i53_A 238 GYVLSAVLHDWDDLSAVAILRRCAEAAGS---GGVVLVI-EAVAGDE-H-A-----GTGMDLRMLTYF-GGKERSLAELG 305 (332)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHTT---TCEEEEE-ECCCC-----C-----CHHHHHHHHHHH-SCCCCCHHHHH
T ss_pred EEEEehhhccCCHHHHHHHHHHHHHhcCC---CCEEEEE-eecCCCC-C-c-----cHHHHHHHHhhC-CCCCCCHHHHH
Confidence 99999999999999999999999999999 9999999 9887765 2 1 246788888776 99999999999
Q ss_pred HHHHHCCCCceEEEecCCceEEEEEEc
Q 044482 317 ALAMAAGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 317 ~ll~~aGf~~~~~~~~~~~~~vi~~~k 343 (345)
++|++|||+++++.+.++ .++||++|
T Consensus 306 ~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 306 ELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred HHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 999999999999999988 99999986
No 7
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=1.7e-47 Score=360.65 Aligned_cols=316 Identities=23% Similarity=0.301 Sum_probs=269.4
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE--------
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID-------- 89 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~-------- 89 (345)
++..+|..+++|+++++|+ |||.|..+| .+.|++|||+++++ ++.+++.++|+||+|++.|+|++.
T Consensus 16 ~~~~~~~~~~~l~~a~~lg-if~~L~~~~-~~~t~~eLA~~~g~----~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~ 89 (358)
T 1zg3_A 16 KHVYNFVSSMALKSAMELG-IADAIHNHG-KPMTLSELASSLKL----HPSKVNILHRFLRLLTHNGFFAKTIVKGKEGD 89 (358)
T ss_dssp HHHTTHHHHHHHHHHHHHT-HHHHHHHHT-SCEEHHHHHHHTTC----CTTTHHHHHHHHHHHHHTTSEEEEEECCSSSS
T ss_pred HHHHHHHHHHHHHHHHHCC-hHhHHhhcC-CCcCHHHHHHhcCC----CCcchHHHHHHHHHHhhCCcEEEecccccccC
Confidence 3456889999999999999 999994433 37999999999999 222478999999999999999887
Q ss_pred ---eEeeecCCCccccccchhhhhhhhhccccchhhhhchHHH---HH----H--HhHhcCcchhhhhccCchhHH--HH
Q 044482 90 ---VVMYNLFPGAKERTMEEFNALAIGAGFGTIKVICRAYCYW---VI----E--FYKTMHIMDCIYLTMLPMMLN--LF 155 (345)
Q Consensus 90 ---~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~----~--~~~~~g~~~~~~~~~~~~~~~--~f 155 (345)
++.|++|+.++.|.++++.++++++.+..++..++.|.+| ++ . |+..+|.++|+|+.++|+..+ .|
T Consensus 90 g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f 169 (358)
T 1zg3_A 90 EEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMF 169 (358)
T ss_dssp CCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHH
T ss_pred CCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHH
Confidence 3699999999887777777889988876666678888887 22 1 555678889999999999999 99
Q ss_pred HHHHHHhhHHHHHHHHHhc--cCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---CceEEeccCCc
Q 044482 156 NQSMQNHTAIVMKKILEIY--KGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---CVEHVEGDMFV 230 (345)
Q Consensus 156 ~~~m~~~~~~~~~~i~~~~--~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---ri~~~~gd~~~ 230 (345)
+.+|...+.... .+++.+ + |++..+|||||||+|.++..+++++|+++++++|+|.+++.++ +++++.+|+++
T Consensus 170 ~~~m~~~~~~~~-~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~ 247 (358)
T 1zg3_A 170 QDAMASDSRMFK-LVLQENKRV-FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFK 247 (358)
T ss_dssp HHHHHHHHHTHH-HHHHHTHHH-HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTT
T ss_pred HHHHhcccHHHH-HHHHhcchh-ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCC
Confidence 999998877666 788888 4 7888899999999999999999999999999999999999887 79999999999
Q ss_pred CCCCCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccC
Q 044482 231 NVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGR 310 (345)
Q Consensus 231 ~~p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r 310 (345)
++|+.|+|+++++||+|+|+++.++|++++++|+|+++||+++|. |.+.++....+........+|+.|+... +|++|
T Consensus 248 ~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~-e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~g~~~ 325 (358)
T 1zg3_A 248 SIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIII-DISIDETSDDRGLTELQLDYDLVMLTMF-LGKER 325 (358)
T ss_dssp CCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEE-ECEECTTCSCHHHHHHHHHHHHHHHHHH-SCCCE
T ss_pred CCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEE-EeccCCCCccchhhhHHHhhCHHHhccC-CCCCC
Confidence 777679999999999999999999999999999982226899999 9988766543211224466788888765 89999
Q ss_pred CHHHHHHHHHHCCCCceEEEecCCceEEEEEEc
Q 044482 311 TAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 311 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 343 (345)
|.++|+++|+++||+++++.+.++..++||++|
T Consensus 326 t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 326 TKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp EHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 999999999999999999999888889999986
No 8
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=6.8e-47 Score=355.77 Aligned_cols=314 Identities=23% Similarity=0.317 Sum_probs=267.4
Q ss_pred HHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE---eEeeec
Q 044482 19 LQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID---VVMYNL 95 (345)
Q Consensus 19 ~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~---~~~y~~ 95 (345)
+..+|..+++|+++++|+ ||+.|..++| +.|++|||+++++ ++.+++.+.|+||+|++.|+|++. ++.|++
T Consensus 23 ~~~~~~~~~~l~~a~~lg-if~~L~~~~~-~~t~~ela~~~~~----~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~ 96 (352)
T 1fp2_A 23 HIYAFIDSMSLKWAVEMN-IPNIIQNHGK-PISLSNLVSILQV----PSSKIGNVRRLMRYLAHNGFFEIITKEEESYAL 96 (352)
T ss_dssp HHTTHHHHHHHHHHHHTT-HHHHHHHHTS-CEEHHHHHHHHTC----CGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHCC-hhhhhhhcCC-CccHHHHHHHhCc----CCCChHHHHHHHHHHHhCCeEEEecCCCCeEeC
Confidence 456788999999999999 9999944333 7999999999999 222477999999999999999987 369999
Q ss_pred CCCccccccchhhhhhhhhccccchhhhhchHHH---HH-H----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHHH
Q 044482 96 FPGAKERTMEEFNALAIGAGFGTIKVICRAYCYW---VI-E----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVM 167 (345)
Q Consensus 96 t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~-~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~ 167 (345)
|+.++.|.+++|.++++++.+..++..+..|.+| ++ + |+..+|.++|+|+.++|+..+.|+++|...+....
T Consensus 97 t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~ 176 (352)
T 1fp2_A 97 TVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLIN 176 (352)
T ss_dssp CHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhh
Confidence 9999887777777888888776666667888887 34 2 66677889999999999999999999999887766
Q ss_pred HHHHHhc--cCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---CceEEeccCCcCCCCCCEEEecc
Q 044482 168 KKILEIY--KGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---CVEHVEGDMFVNVPSGQAIFTKS 242 (345)
Q Consensus 168 ~~i~~~~--~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---ri~~~~gd~~~~~p~~D~i~~~~ 242 (345)
+. ++.+ + +++..+|||||||+|.++..+++++|+++++++|+|.+++.++ +++++.+|+++++|..|+|++++
T Consensus 177 ~~-~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~ 254 (352)
T 1fp2_A 177 LA-LRDCDFV-FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKY 254 (352)
T ss_dssp HH-HHTCHHH-HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEES
T ss_pred hH-HHhcccc-cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeeh
Confidence 66 7777 5 7788899999999999999999999999999999999999888 79999999998777679999999
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHC
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAA 322 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~a 322 (345)
+||||+|+++.++|++++++|+|+++||+++|. |.+.++....+........+|+.|+. . ++++||.++|+++++++
T Consensus 255 ~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~-e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~~~t~~e~~~ll~~a 331 (352)
T 1fp2_A 255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII-DMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEWKKLFIEA 331 (352)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEE-ECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHHHHHHHHT
T ss_pred hhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEE-EeecCCCCCccchhhhHhhccHHHHh-c-cCCCCCHHHHHHHHHHC
Confidence 999999999999999999999983337899999 99887654321111234567877777 5 68999999999999999
Q ss_pred CCCceEEEecCCceEEEEEEc
Q 044482 323 GFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 323 Gf~~~~~~~~~~~~~vi~~~k 343 (345)
||+++++.+.++..++||++|
T Consensus 332 Gf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 332 GFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp TCCEEEEEEEETTEEEEEEEC
T ss_pred CCCeeEEEecCCCcEEEEEeC
Confidence 999999999888889999986
No 9
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.9e-46 Score=350.14 Aligned_cols=302 Identities=18% Similarity=0.175 Sum_probs=265.0
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-EeeecC
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-VMYNLF 96 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-~~y~~t 96 (345)
++..+|..+++++++++|| ||+.| .+| +.|++|||+++++ +++.+.|+||+|++.|+|++.+ +.|++|
T Consensus 14 ~~~~~~~~~~~l~~~~~lg-i~~~l-~~~--~~t~~ela~~~~~-------~~~~l~r~Lr~L~~~g~l~~~~~~~y~~t 82 (334)
T 2ip2_A 14 QVVTGEWKSRCVYVATRLG-LADLI-ESG--IDSDETLAAAVGS-------DAERIHRLMRLLVAFEIFQGDTRDGYANT 82 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHH-HTT--CCSHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcC-cHHHH-hCC--CCCHHHHHHHhCc-------CHHHHHHHHHHHHhCCceEecCCCeEecC
Confidence 4677899999999999999 99999 543 6899999999999 7999999999999999999876 599999
Q ss_pred CCccccccchhhhhhhhhccccchhhhhchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHHHHH
Q 044482 97 PGAKERTMEEFNALAIGAGFGTIKVICRAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMKK 169 (345)
Q Consensus 97 ~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~ 169 (345)
+.++.+. ++|.++++++.+..++.. ..|.+| +++ |+..+|.++|+++.++|+..+.|+++| ..+....+.
T Consensus 83 ~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~ 159 (334)
T 2ip2_A 83 PTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHE 159 (334)
T ss_dssp HHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHH
T ss_pred HHHHHHh-CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHH
Confidence 9998866 667688888877655443 777777 333 777778899999999999999999999 888777788
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCcCCCCC-CEE
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFVNVPSG-QAI 238 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~~~p~~-D~i 238 (345)
+++.++ +++ .+|||||||+|.++..+++++|+.+++++|+|.+++.++ |++++.+|+++++|.+ |+|
T Consensus 160 ~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v 237 (334)
T 2ip2_A 160 IPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIY 237 (334)
T ss_dssp HHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEE
T ss_pred HHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEE
Confidence 999888 888 999999999999999999999999999999988887664 6999999999987765 999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHH
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKAL 318 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~l 318 (345)
++++++|+|+++++.++|++++++|+| ||+++|. |.+.++...+ .....+|+.|+... ++++||.++|+++
T Consensus 238 ~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~t~~e~~~l 308 (334)
T 2ip2_A 238 LLSRIIGDLDEAASLRLLGNCREAMAG---DGRVVVI-ERTISASEPS----PMSVLWDVHLFMAC-AGRHRTTEEVVDL 308 (334)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHHHSCT---TCEEEEE-ECCBCSSSCC----HHHHHHHHHHHHHH-SCCCCBHHHHHHH
T ss_pred EEchhccCCCHHHHHHHHHHHHHhcCC---CCEEEEE-EeccCCCCCc----chhHHhhhHhHhhC-CCcCCCHHHHHHH
Confidence 999999999999999999999999999 9999999 9988765332 23456788888776 8999999999999
Q ss_pred HHHCCCCceEEEecCCceEEEEEEcC
Q 044482 319 AMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 319 l~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
++++||+++++.+.++..++|+++|.
T Consensus 309 l~~aGf~~~~~~~~~~~~~~i~~~~~ 334 (334)
T 2ip2_A 309 LGRGGFAVERIVDLPMETRMIVAARA 334 (334)
T ss_dssp HHHTTEEEEEEEEETTTEEEEEEEEC
T ss_pred HHHCCCceeEEEECCCCCEEEEEEeC
Confidence 99999999999998888999999873
No 10
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=3.2e-46 Score=353.75 Aligned_cols=318 Identities=33% Similarity=0.495 Sum_probs=258.3
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCc---hhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE-----
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLG---VNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID----- 89 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~---~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~----- 89 (345)
++..+|..+++|++|++|+ |||.|..+ |+| .|++|||+++++. ..++.+++.++|+||+|++.|+|++.
T Consensus 30 ~l~~~~~~~~~l~~a~~lg-if~~L~~~-g~pg~~~t~~eLA~~~~~~-~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~ 106 (372)
T 1fp1_D 30 VLTTNLVYPAVLNAAIDLN-LFEIIAKA-TPPGAFMSPSEIASKLPAS-TQHSDLPNRLDRMLRLLASYSVLTSTTRTIE 106 (372)
T ss_dssp HHHHTTHHHHHHHHHHHTT-HHHHHHTC-SSTTCCBCHHHHHTTSCGG-GCCTTHHHHHHHHHHHHHHTTSEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHCC-hHHHHHhc-CCCCCCcCHHHHHHhcCCC-CCCCcChHHHHHHHHHHhhCCceEecccccC
Confidence 4566888999999999999 99999433 223 8999999999971 00122478999999999999999887
Q ss_pred ----eEeeecCCCccccccchh-hhhhhhhccccchhhhhchHHH---HH---H--HhHhcCcchhhhhccCchhHHHHH
Q 044482 90 ----VVMYNLFPGAKERTMEEF-NALAIGAGFGTIKVICRAYCYW---VI---E--FYKTMHIMDCIYLTMLPMMLNLFN 156 (345)
Q Consensus 90 ----~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l---~~---~--~~~~~g~~~~~~~~~~~~~~~~f~ 156 (345)
.+.|++|+.++.|.++++ .++++++.+..++..++.|.+| ++ . |+..+|.++|+++.++|+..+.|+
T Consensus 107 ~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~ 186 (372)
T 1fp1_D 107 DGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFN 186 (372)
T ss_dssp TSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHH
T ss_pred CCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHhCHHHHHHHH
Confidence 359999999988777766 5788888876666667788887 22 1 555667889999999999999999
Q ss_pred HHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---CceEEeccCCcCCC
Q 044482 157 QSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---CVEHVEGDMFVNVP 233 (345)
Q Consensus 157 ~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---ri~~~~gd~~~~~p 233 (345)
++|...+....+.+++.++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.++ +++++.+|+++++|
T Consensus 187 ~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~ 266 (372)
T 1fp1_D 187 KSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVP 266 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCC
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCcccCCC
Confidence 999998887778888888657788899999999999999999999999999999999999887 79999999998777
Q ss_pred CCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHH
Q 044482 234 SGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAG 313 (345)
Q Consensus 234 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~ 313 (345)
..|+|+++++||||+|+++.++|++++++|+| ||+++|. |.+.++....+........+|+.|+... ++++||.+
T Consensus 267 ~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~t~~ 341 (372)
T 1fp1_D 267 QGDAMILKAVCHNWSDEKCIEFLSNCHKALSP---NGKVIIV-EFILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEK 341 (372)
T ss_dssp CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-EEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHH
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHhcCC---CCEEEEE-EeccCCCCccchHHHHHHHhhHHHHhcc-CCccCCHH
Confidence 67999999999999999999999999999999 9999999 9988766433211113456788777654 88999999
Q ss_pred HHHHHHHHCCCCceEEEec-CCceEEEEEEc
Q 044482 314 EFKALAMAAGFGTIKVICR-SYCYWVIEFYK 343 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~k 343 (345)
+|+++|+++||+++++.+. ++..+|||++|
T Consensus 342 e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 342 QYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 9999999999999999884 44259999986
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=2.4e-44 Score=339.68 Aligned_cols=308 Identities=12% Similarity=0.078 Sum_probs=243.9
Q ss_pred CHHHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeec
Q 044482 16 DARLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNL 95 (345)
Q Consensus 16 ~~~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~ 95 (345)
--++..+|..+++++++++|+ |||.|...+| |.|++|||+++++ +++.++|+||+|++.|+|++++++|++
T Consensus 19 l~~l~~g~~~~~~l~~a~~lg-ifd~L~~~~~-~~t~~eLA~~~g~-------~~~~l~rlLr~l~~~g~l~~~~~~y~~ 89 (363)
T 3dp7_A 19 AQEIAFGPVVFQVSRLMLKFG-IFQLLSGKRE-GYTLQEISGRTGL-------TRYAAQVLLEASLTIGTILLEEDRYVL 89 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHTCTT-CBCHHHHHHHHTC-------CHHHHHHHHHHHHHHTSEEEETTEEEE
T ss_pred HHHHHhhHHHHHHHHHHHHhC-HHHHHHhcCC-CCCHHHHHHHhCc-------CHHHHHHHHHHHhhCCCeEecCCEEec
Confidence 346788999999999999999 9999943233 7999999999999 799999999999999999988779999
Q ss_pred CCCccccccchhhhhhhhhccccchhhhhchHHH---HHH----HhHhcC--cchhhhhccCchhHHH----HHHHHHHh
Q 044482 96 FPGAKERTMEEFNALAIGAGFGTIKVICRAYCYW---VIE----FYKTMH--IMDCIYLTMLPMMLNL----FNQSMQNH 162 (345)
Q Consensus 96 t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~----~~~~~g--~~~~~~~~~~~~~~~~----f~~~m~~~ 162 (345)
|+.|+.|.++++.+. ++.+. .+..+++|.+| +++ +...+| .++|+++.++|+..+. |+.+|...
T Consensus 90 t~~s~~L~~~~~~~~--~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 166 (363)
T 3dp7_A 90 AKAGWFLLNDKMARV--NMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQ 166 (363)
T ss_dssp CHHHHHHHHCHHHHH--HHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCC
T ss_pred ccchHHhhCCCcccc--hheee-cHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhh
Confidence 999977766654332 23332 34567888887 333 555667 6899999999987663 56665543
Q ss_pred hHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCcC-
Q 044482 163 TAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFVN- 231 (345)
Q Consensus 163 ~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~~- 231 (345)
.. ..+++.+. ..+..+|||||||+|.++..+++++|+++++++|+|++++.++ |++++.+|++++
T Consensus 167 ~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 242 (363)
T 3dp7_A 167 SF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRD 242 (363)
T ss_dssp CC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSS
T ss_pred hH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccC
Confidence 21 23444444 4567899999999999999999999999999999999888665 699999999984
Q ss_pred --CCCC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchh-hhhhhccchhhhhhcCCC
Q 044482 232 --VPSG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSI-NRNILTLDIVMYDLFPQA 307 (345)
Q Consensus 232 --~p~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~ 307 (345)
+|.. |+|+++++||+|+++++.++|++++++|+| ||+|+|. |.+.++....... .......++.|+... ++
T Consensus 243 ~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 317 (363)
T 3dp7_A 243 VPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGK---DSKVYIM-ETLWDRQRYETASYCLTQISLYFTAMANG-NS 317 (363)
T ss_dssp CCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCT---TCEEEEE-ECCTTSCSSHHHHHHHHHHHHHHHHSSCS-SC
T ss_pred CCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCC---CcEEEEE-eeccCCccccchhhHHHHhhhhHHhhhCC-CC
Confidence 6644 999999999999999999999999999999 9999999 9888765432110 011122333344443 67
Q ss_pred ccCCHHHHHHHHHHCCCCceEEEecCC-ceEEEEEEcC
Q 044482 308 KGRTAGEFKALAMAAGFGTIKVICRSY-CYWVIEFYKP 344 (345)
Q Consensus 308 ~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~k~ 344 (345)
++||.+||+++|++|||+++++.+..+ ..++|+++|.
T Consensus 318 ~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~~ 355 (363)
T 3dp7_A 318 KMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRLK 355 (363)
T ss_dssp CSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEEC
T ss_pred cccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEeec
Confidence 899999999999999999999987654 5899999874
No 12
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=1.6e-43 Score=333.61 Aligned_cols=306 Identities=18% Similarity=0.206 Sum_probs=264.3
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE-eEeeecC
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID-VVMYNLF 96 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~-~~~y~~t 96 (345)
++..+|..+++|.++++++ ||+.| .+| +.|++|||+++++ ++..+.|+||+|++.|+|++. ++.|++|
T Consensus 25 ~~~~~~~~~~~l~~~~~l~-i~~~l-~~~--~~t~~ela~~~~~-------~~~~l~r~L~~L~~~g~~~~~~~g~y~~t 93 (360)
T 1tw3_A 25 IRLGSLHTPMVVRTAATLR-LVDHI-LAG--ARTVKALAARTDT-------RPEALLRLIRHLVAIGLLEEDAPGEFVPT 93 (360)
T ss_dssp HHHHCSHHHHHHHHHHHTT-HHHHH-HTT--CCBHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred HHHHhHHHHHHHHHHHHhC-HHHHH-hCC--CCCHHHHHHHhCc-------CHHHHHHHHHHHHHCCCEEecCCCeEEeC
Confidence 5667889999999999999 99999 653 6899999999999 799999999999999999885 4599999
Q ss_pred CCccccccchhhhhhhhhccccchh-hhhchHHHH---HH----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHHHH
Q 044482 97 PGAKERTMEEFNALAIGAGFGTIKV-ICRAYCYWV---IE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMK 168 (345)
Q Consensus 97 ~~s~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~l~---~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~ 168 (345)
+.++.+.+++|.++++++.+..++. .+..|..+. ++ |+..+|.++|+++..+|+....|..+|........+
T Consensus 94 ~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~ 173 (360)
T 1tw3_A 94 EVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFD 173 (360)
T ss_dssp TTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTH
T ss_pred HHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHH
Confidence 9988887777778999888776543 567888772 22 566678899999999999999999999887776677
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCcCCCCC-CE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFVNVPSG-QA 237 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~~~p~~-D~ 237 (345)
.+++.++ +....+|||||||+|.++..+++++|+++++++|+|.+++.++ +++++.+|+++++|.+ |+
T Consensus 174 ~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~ 252 (360)
T 1tw3_A 174 APAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADA 252 (360)
T ss_dssp HHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEE
T ss_pred HHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccE
Confidence 8888888 8888999999999999999999999999999999988877654 6999999999878865 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC-CCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHH
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG-LPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~ 316 (345)
|++++++|+|+++++.++|++++++|+| ||+++|. |.+ .++.... .....+|+.|+... +++.++.++|+
T Consensus 253 v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~t~~e~~ 323 (360)
T 1tw3_A 253 IILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIH-ERDDLHENSFN----EQFTELDLRMLVFL-GGALRTREKWD 323 (360)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEE-ECCBCGGGCCS----HHHHHHHHHHHHHH-SCCCCBHHHHH
T ss_pred EEEcccccCCCHHHHHHHHHHHHHhcCC---CcEEEEE-EEeccCCCCCc----chhhhccHHHhhhc-CCcCCCHHHHH
Confidence 9999999999999999999999999999 9999999 988 6544322 12345677887776 89999999999
Q ss_pred HHHHHCCCCceEEEecCCc-----eEEEEEEcC
Q 044482 317 ALAMAAGFGTIKVICRSYC-----YWVIEFYKP 344 (345)
Q Consensus 317 ~ll~~aGf~~~~~~~~~~~-----~~vi~~~k~ 344 (345)
++|+++||+++++.+.++. .++|+++|+
T Consensus 324 ~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 324 GLAASAGLVVEEVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp HHHHHTTEEEEEEEEEECSSSSCEEEEEEEEEC
T ss_pred HHHHHCCCeEEEEEeCCCCcccCccEEEEEEeC
Confidence 9999999999999888665 899999986
No 13
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=4e-43 Score=329.94 Aligned_cols=303 Identities=11% Similarity=0.074 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecC
Q 044482 17 ARLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLF 96 (345)
Q Consensus 17 ~~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t 96 (345)
-++..+|+.+++|+++++|| |||.| . + +.|++|||+++++ +++.++|+||+|++.|+|++++++|.+|
T Consensus 29 ~~~~~~~~~~~~l~~a~~lg-if~~l-~--~-~~t~~elA~~~~~-------~~~~l~rlLr~L~~~gll~~~~~~y~~t 96 (352)
T 3mcz_A 29 VKLSDQYRQSAILHYAVADK-LFDLT-Q--T-GRTPAEVAASFGM-------VEGKAAILLHALAALGLLTKEGDAFRNT 96 (352)
T ss_dssp HHHHHTHHHHHHHHHHHHTT-HHHHT-T--S-CBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHCC-hHHHh-C--C-CCCHHHHHHHhCc-------ChHHHHHHHHHHHHCCCeEecCCeeecC
Confidence 34778999999999999999 99999 4 2 7999999999999 7999999999999999999988899999
Q ss_pred CCccc-cccchhhhhhhhhccccchhhhhchHHHHHHHhHhcCcc--hhhhhccCchhHHHHHHHHHHhhHHHHHHHHHh
Q 044482 97 PGAKE-RTMEEFNALAIGAGFGTIKVICRAYCYWVIEFYKTMHIM--DCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEI 173 (345)
Q Consensus 97 ~~s~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~--~~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~ 173 (345)
+.++. +.+++|.+++.++.+. ...++.|.++...++...... ...++.++|+..+.|..+|...... ...+++.
T Consensus 97 ~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~ 173 (352)
T 3mcz_A 97 ALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQESRFAHDTRARDAFNDAMVRLSQP-MVDVVSE 173 (352)
T ss_dssp HHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHHHHTTTCHHHHHHHHHHHHHHHHH-HHHHHHT
T ss_pred HHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccccccccCHHHHHHHHHHHHhhhhh-HHHHHHh
Confidence 99987 7777777788777543 345778888733233221111 1123467899999999999884433 3478888
Q ss_pred ccCccc-ccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCcC---CCCC-CEE
Q 044482 174 YKGFKE-LKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFVN---VPSG-QAI 238 (345)
Q Consensus 174 ~~~~~~-~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~~---~p~~-D~i 238 (345)
++ +.+ ..+|||||||+|.++..+++++|+++++++|+|++++.++ |++++.+|++++ .|.+ |+|
T Consensus 174 ~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v 252 (352)
T 3mcz_A 174 LG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVV 252 (352)
T ss_dssp CG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEE
T ss_pred CC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEE
Confidence 88 877 8899999999999999999999999999999998877655 699999999984 5555 999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHH
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKAL 318 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~l 318 (345)
+++++||+|+++++.++|++++++|+| ||+++|. |.+.++....+ .....+|+.|+..+.+++.||.++|+++
T Consensus 253 ~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~e~~~l 325 (352)
T 3mcz_A 253 MLNDCLHYFDAREAREVIGHAAGLVKP---GGALLIL-TMTMNDDRVTP---ALSADFSLHMMVNTNHGELHPTPWIAGV 325 (352)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEE-EECCCTTSSSS---HHHHHHHHHHHHHSTTCCCCCHHHHHHH
T ss_pred EEecccccCCHHHHHHHHHHHHHHcCC---CCEEEEE-EeccCCCCCCC---chHHHhhHHHHhhCCCCCcCCHHHHHHH
Confidence 999999999999999999999999999 9999999 99887764433 2345678888876557899999999999
Q ss_pred HHHCCCCceEEEecCCceEEEEEEcC
Q 044482 319 AMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 319 l~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
|+++||++++.. .+...+++++||
T Consensus 326 l~~aGf~~~~~~--~g~~~l~~a~kp 349 (352)
T 3mcz_A 326 VRDAGLAVGERS--IGRYTLLIGQRS 349 (352)
T ss_dssp HHHTTCEEEEEE--ETTEEEEEEECC
T ss_pred HHHCCCceeeec--cCceEEEEEecC
Confidence 999999998853 355899999987
No 14
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=6.6e-44 Score=337.85 Aligned_cols=306 Identities=18% Similarity=0.175 Sum_probs=260.3
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeE-EeE--eee
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTI-DVV--MYN 94 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~-~~~--~y~ 94 (345)
++..+|..+++++++++++ ||+.| .+| +.|++|||+++++ +++.+.|+||+|++.|+|++ .++ .|+
T Consensus 22 ~~~~~~~~~~~l~~~~~l~-i~~~l-~~~--~~t~~eLA~~~g~-------~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~ 90 (374)
T 1qzz_A 22 KNLGNLVTPMALRVAATLR-LVDHL-LAG--ADTLAGLADRTDT-------HPQALSRLVRHLTVVGVLEGGEKQGRPLR 90 (374)
T ss_dssp HTTTCCHHHHHHHHHHHTT-HHHHH-HTT--CCSHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEECCCC-CCCCE
T ss_pred HHHHhhHHHHHHHHHHHcC-hHHHH-hCC--CCCHHHHHHHhCc-------CHHHHHHHHHHHhhCCCEEEeCCCCeEEE
Confidence 3456778899999999999 99999 653 6899999999999 79999999999999999988 455 899
Q ss_pred cCCCccccccchhhhhhhhhccccchhhh-hchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHH
Q 044482 95 LFPGAKERTMEEFNALAIGAGFGTIKVIC-RAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIV 166 (345)
Q Consensus 95 ~t~~s~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~ 166 (345)
+|+.++.+.++++.++++++.+..++..+ ..|..+ +++ |...+|.++|+++.++|+....|+.+|.......
T Consensus 91 ~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 170 (374)
T 1qzz_A 91 PTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLA 170 (374)
T ss_dssp ECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTT
T ss_pred EChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhH
Confidence 99999878777777899988887655456 778877 333 6666788999999999999999999998877666
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCcCCCCC-
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFVNVPSG- 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~~~p~~- 235 (345)
.+.+++.++ +....+|||||||+|.++..+++++|+++++++|+|.+++.++ +++++.+|+++++|.+
T Consensus 171 ~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 249 (374)
T 1qzz_A 171 YEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTA 249 (374)
T ss_dssp THHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCE
T ss_pred HHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCC
Confidence 678888888 8888999999999999999999999999999999988887665 6999999999878865
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc--CCCCCCCCchhhhhhhccchhhhhhcCCCccCCHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR--GLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAG 313 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~ 313 (345)
|+|++++++|+|+++++.++|++++++|+| ||+++|. |. +.++.... .....+|+.|+... +++.++.+
T Consensus 250 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~ 320 (374)
T 1qzz_A 250 DVVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVL-DRADVEGDGADR----FFSTLLDLRMLTFM-GGRVRTRD 320 (374)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-ECCH-------H----HHHHHHHHHHHHHH-SCCCCCHH
T ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcCC---CcEEEEE-echhhcCCCCCc----chhhhcchHHHHhC-CCcCCCHH
Confidence 999999999999999999999999999999 9999999 88 76554221 23356778887776 89999999
Q ss_pred HHHHHHHHCCCCceEEEecCCce-----EEEEEEcC
Q 044482 314 EFKALAMAAGFGTIKVICRSYCY-----WVIEFYKP 344 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~k~ 344 (345)
+|+++|+++||+++++...++.. ++|+++|+
T Consensus 321 ~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 321 EVVDLAGSAGLALASERTSGSTTLPFDFSILEFTAV 356 (374)
T ss_dssp HHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEEC
T ss_pred HHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEEC
Confidence 99999999999999999887766 99999986
No 15
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=1.2e-42 Score=327.62 Aligned_cols=297 Identities=13% Similarity=0.133 Sum_probs=251.4
Q ss_pred HHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCcc
Q 044482 21 NLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAK 100 (345)
Q Consensus 21 ~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~ 100 (345)
.+|..+++++++++|| ||+.| .+ | +.|++|||+++++ +++.++|+||+|++.|+|+++++.|++|+.+.
T Consensus 40 ~~~~~~~~l~~a~~lg-if~~L-~~-~-~~t~~eLA~~~g~-------~~~~l~rlLr~L~~~gll~~~~~~y~~t~~~~ 108 (359)
T 1x19_A 40 KGLIEFSCMKAAIELD-LFSHM-AE-G-PKDLATLAADTGS-------VPPRLEMLLETLRQMRVINLEDGKWSLTEFAD 108 (359)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHH-TT-C-CBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTEEEECHHHH
T ss_pred HHHHHHHHHHHHHHcC-cHHHH-cC-C-CCCHHHHHHHhCc-------ChHHHHHHHHHHHhCCCeEeeCCeEecCHHHH
Confidence 4789999999999999 99999 54 3 6899999999999 79999999999999999999888999999866
Q ss_pred c-cccchh---hhhhhhhccccchhhhhchHHHHHHHhHhcCcchhhhhccCch---hHHHHHHHHHHhhH-HHHHHHHH
Q 044482 101 E-RTMEEF---NALAIGAGFGTIKVICRAYCYWVIEFYKTMHIMDCIYLTMLPM---MLNLFNQSMQNHTA-IVMKKILE 172 (345)
Q Consensus 101 ~-l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~---~~~~f~~~m~~~~~-~~~~~i~~ 172 (345)
. +.++++ .++++++.+. .+..++.|.+|...++. |.+ |+++.++|+ ..+.|..+|...+. ...+.+++
T Consensus 109 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~--g~~-~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~ 184 (359)
T 1x19_A 109 YMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRG--QKN-FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLE 184 (359)
T ss_dssp HHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTT--SCC-CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhc--CCC-CcccccCchhhHHHHHHHHHHHHhccchhHHHHHH
Confidence 5 777766 6788887765 34567788887332332 344 888889999 99999999999887 77788999
Q ss_pred hccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCCCEEEec
Q 044482 173 IYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSGQAIFTK 241 (345)
Q Consensus 173 ~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~D~i~~~ 241 (345)
.++ +.+..+|||||||+|.++..+++++|+++++++|+|.+++.++ |++++.+|+++ +++++|+|+++
T Consensus 185 ~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~ 263 (359)
T 1x19_A 185 EAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFC 263 (359)
T ss_dssp HCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEE
T ss_pred hcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEe
Confidence 998 8888999999999999999999999999999999988887664 59999999998 56666999999
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCcc----CCHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKG----RTAGEFKA 317 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----rt~~e~~~ 317 (345)
+++|+|+++++.++|++++++|+| ||+++|. |.+.++. ..+. ....+ .|+....++++ ++.++|++
T Consensus 264 ~vlh~~~d~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~-~~~~---~~~~~--~~~~~~~~g~~~~~~~t~~e~~~ 333 (359)
T 1x19_A 264 RILYSANEQLSTIMCKKAFDAMRS---GGRLLIL-DMVIDDP-ENPN---FDYLS--HYILGAGMPFSVLGFKEQARYKE 333 (359)
T ss_dssp SCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEE-EECCCCT-TSCC---HHHHH--HHGGGGGSSCCCCCCCCGGGHHH
T ss_pred chhccCCHHHHHHHHHHHHHhcCC---CCEEEEE-ecccCCC-CCch---HHHHH--HHHHhcCCCCcccCCCCHHHHHH
Confidence 999999999999999999999999 9999999 9887765 2221 11222 34433325777 99999999
Q ss_pred HHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 318 LAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 318 ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
+|+++||+++++.+.+ ..++|+++||
T Consensus 334 ll~~aGf~~v~~~~~~-~~~vi~a~kp 359 (359)
T 1x19_A 334 ILESLGYKDVTMVRKY-DHLLVQAVKP 359 (359)
T ss_dssp HHHHHTCEEEEEEEET-TEEEEEEECC
T ss_pred HHHHCCCceEEEEecC-CceEEEEeCC
Confidence 9999999999999887 7899999986
No 16
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-42 Score=323.37 Aligned_cols=307 Identities=13% Similarity=0.084 Sum_probs=261.1
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCC
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFP 97 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~ 97 (345)
++..+|..+++++++++|| ||+.| .+ | +.|++|||+++++ +++.+.|+||+|++.|+|+++++.|++|+
T Consensus 12 ~~~~~~~~~~~l~~~~~l~-i~~~l-~~-~-~~t~~ela~~~~~-------~~~~l~r~L~~L~~~g~l~~~~~~y~~t~ 80 (335)
T 2r3s_A 12 NTVNAYQRSAAIKAAVELN-VFTAI-SQ-G-IESSQSLAQKCQT-------SERGMRMLCDYLVIIGFMTKQAEGYRLTS 80 (335)
T ss_dssp HHHTTHHHHHHHHHHHHTT-HHHHH-TT-S-EECHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTEEEECH
T ss_pred HHHHHHHHHHHHHHHHHcC-hHHHH-hc-C-CCCHHHHHHHhCC-------CchHHHHHHHHHHhcCCeEecCCEEecCH
Confidence 4667889999999999999 99999 54 3 7999999999999 79999999999999999998777999999
Q ss_pred Ccc-ccccchhhhhhhhhccccchhhhhchHHHHHHHhHhcCcch--hhhhccCchhHHHHHHHHHHhhHHHHHHHHHhc
Q 044482 98 GAK-ERTMEEFNALAIGAGFGTIKVICRAYCYWVIEFYKTMHIMD--CIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIY 174 (345)
Q Consensus 98 ~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~--~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~ 174 (345)
.++ .+.++++.++++++.+..++..++.|.++...++.. ...+ |+++.++|+..+.|...|..........+++.+
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (335)
T 2r3s_A 81 DSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKG-GTAISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLV 159 (335)
T ss_dssp HHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHT-SCCSTTTGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHH
T ss_pred HHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcC-CCCCCCcccccCCHHHHHHHHHHHHHHHhhhHHHHHHhc
Confidence 995 477777778888888775545678888873323221 1122 788889999999999999988887778888888
Q ss_pred cCc--ccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCC-CEEEe
Q 044482 175 KGF--KELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSG-QAIFT 240 (345)
Q Consensus 175 ~~~--~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~-D~i~~ 240 (345)
+ + .+..+|||||||+|.++..+++++|+.+++++|++.+++.++ |++++.+|+++ ++|++ |+|++
T Consensus 160 ~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~ 238 (335)
T 2r3s_A 160 N-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLL 238 (335)
T ss_dssp T-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEE
T ss_pred c-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEE
Confidence 8 7 778899999999999999999999999999999998877665 59999999998 66665 99999
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHH
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAM 320 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~ 320 (345)
++++|+|+++++.++|++++++|+| ||+++|. |...++....+ .....+++.|+...++++.++.++|+++++
T Consensus 239 ~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~ 311 (335)
T 2r3s_A 239 PNFLHHFDVATCEQLLRKIKTALAV---EGKVIVF-DFIPNSDRITP---PDAAAFSLVMLATTPNGDAYTFAEYESMFS 311 (335)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-ECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCCHHHHHHHHH
T ss_pred cchhccCCHHHHHHHHHHHHHhCCC---CcEEEEE-eecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCCHHHHHHHHH
Confidence 9999999999999999999999999 9999999 98877653322 234567777877655789999999999999
Q ss_pred HCCCCceEEEecCCceEEEEEEcC
Q 044482 321 AAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 321 ~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
++||+++++.+.++..++|++++|
T Consensus 312 ~aGf~~~~~~~~~~~~~~i~~~~~ 335 (335)
T 2r3s_A 312 NAGFSHSQLHSLPTTQQQVIVAYK 335 (335)
T ss_dssp HTTCSEEEEECCTTSSSEEEEEEC
T ss_pred HCCCCeeeEEECCCCceeEEEecC
Confidence 999999999998877788888764
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.86 E-value=6e-21 Score=171.40 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=122.9
Q ss_pred ccccceEEecCCccHHHHHHHHHC--CCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCCCEEEeccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTY--PQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSGQAIFTKSV 243 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~D~i~~~~v 243 (345)
++..+|||||||+|.++..+++++ |+++++++|+ |.|++.|+ +++++.+|+.+ ++++.|+|++..+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~ 148 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 148 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESC
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeee
Confidence 456899999999999999999985 6789999999 88988765 68999999987 5555699999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhh-------------hhcCCCccC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMY-------------DLFPQAKGR 310 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~-------------~~~~~~~~r 310 (345)
||++++++...+|++++++|+| ||++++. |.+..++...... ......++... ....--...
T Consensus 149 l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~-e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 149 LQFLEPSERQALLDKIYQGLNP---GGALVLS-EKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-EEBCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeecCchhHhHHHHHHHHHcCC---CcEEEEE-eccCCCCHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 9999999888999999999999 9999999 8876654321100 00000010000 000001246
Q ss_pred CHHHHHHHHHHCCCCceEEEecCCceEEEEEEcCC
Q 044482 311 TAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKPK 345 (345)
Q Consensus 311 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~~ 345 (345)
|.+++.++|++|||+.++++........+.|+|++
T Consensus 224 s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K~~ 258 (261)
T 4gek_A 224 SVETHKARLHKAGFEHSELWFQCFNFGSLVALKAE 258 (261)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEECCT
T ss_pred CHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEEcC
Confidence 88999999999999999886555556667888873
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.82 E-value=1.7e-19 Score=158.91 Aligned_cols=173 Identities=17% Similarity=0.155 Sum_probs=129.4
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC-CE
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG-QA 237 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~-D~ 237 (345)
..+++.+.......+|||||||+|.++..+++.+|+.+++++|+ +.+++.++ +++++.+|+.+ +.+.. |+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 34445444233557999999999999999999999999999999 88877665 68999999988 55544 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhh---hhhh----ccchh----hhhhcCC
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSIN---RNIL----TLDIV----MYDLFPQ 306 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~---~~~~----~~d~~----~~~~~~~ 306 (345)
|++..++|++++++...+|+++++.|+| ||++++. +...++........ +... .+... .+.....
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKE---SGIFINA-DLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKL 188 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-EECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----C
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCC---CcEEEEE-EecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhccc
Confidence 9999999999999888899999999999 9999999 87765432110000 0000 00000 0000012
Q ss_pred CccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 307 AKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 307 ~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
...++.+++.++|++|||+++++.......+++...|+
T Consensus 189 ~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~ 226 (234)
T 3dtn_A 189 DKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKT 226 (234)
T ss_dssp CCCCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEECC
T ss_pred ccccCHHHHHHHHHHcCCCceeeeeeecceeEEEEEec
Confidence 34578999999999999999999888888888888876
No 19
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.76 E-value=5.8e-18 Score=147.38 Aligned_cols=153 Identities=15% Similarity=0.111 Sum_probs=125.1
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~ 235 (345)
..+++.++ .....+|||||||+|.++..+++.. |..+++++|+ +.+++.++ +++++.+|+.+ +++++
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 34566666 6677899999999999999999997 8889999999 88877665 58999999987 66654
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHH
Q 044482 236 --QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAG 313 (345)
Q Consensus 236 --D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~ 313 (345)
|+|++..++|++++. ..+|+++++.|+| ||++++. +.........+. ....++.+
T Consensus 106 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~~-----------------~~~~~~~~ 162 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSEP--LKFLEELKRVAKP---FAYLAII-DWKKEERDKGPP-----------------PEEVYSEW 162 (219)
T ss_dssp CEEEEEEESCGGGCSSH--HHHHHHHHHHEEE---EEEEEEE-EECSSCCSSSCC-----------------GGGSCCHH
T ss_pred CeeEEEeehhhhhcCCH--HHHHHHHHHHhCC---CeEEEEE-EecccccccCCc-----------------hhcccCHH
Confidence 999999999999876 5899999999999 9999999 765543321110 11235799
Q ss_pred HHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 314 EFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
+|.++++++||+++++.........+.++|+
T Consensus 163 ~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~ 193 (219)
T 3dh0_A 163 EVGLILEDAGIRVGRVVEVGKYCFGVYAMIV 193 (219)
T ss_dssp HHHHHHHHTTCEEEEEEEETTTEEEEEEECC
T ss_pred HHHHHHHHCCCEEEEEEeeCCceEEEEEEec
Confidence 9999999999999999888877888888876
No 20
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.76 E-value=9.5e-19 Score=151.84 Aligned_cols=165 Identities=15% Similarity=0.211 Sum_probs=118.2
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~ 234 (345)
...+++.++ .... +|||||||+|.++..++++ |+.+++++|+ +.+++.++ +++++.+|+.+ +++.
T Consensus 33 ~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 33 AENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 345556555 4444 9999999999999999998 8889999999 78877665 58999999988 7764
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhh-hccchhhhhhcCCCccCC
Q 044482 235 G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNI-LTLDIVMYDLFPQAKGRT 311 (345)
Q Consensus 235 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~rt 311 (345)
+ |+|++.+++||+++. ..+|+++++.|+| ||++++. +...+............ ....+...... ....++
T Consensus 110 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 182 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDV--ATAFREIYRILKS---GGKTYIG-GGFGNKELRDSISAEMIRKNPDWKEFNRK-NISQEN 182 (219)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEE-ECCSSHHHHHHHHHHHHHHCTTHHHHHHH-HSSHHH
T ss_pred ccccEEEECchHhhccCH--HHHHHHHHHhCCC---CCEEEEE-eccCcHHHHHHHHHHHHHhHHHHHhhhhh-ccccCC
Confidence 4 999999999999765 5799999999999 9999998 75543211000000000 00001111101 234457
Q ss_pred HHHHHHHHHHCCCCceEEEecCCceEEEEE
Q 044482 312 AGEFKALAMAAGFGTIKVICRSYCYWVIEF 341 (345)
Q Consensus 312 ~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~ 341 (345)
.++|.++|+++||+++++........++..
T Consensus 183 ~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~ 212 (219)
T 3dlc_A 183 VERFQNVLDEIGISSYEIILGDEGFWIIIS 212 (219)
T ss_dssp HHHHHHHHHHHTCSSEEEEEETTEEEEEEB
T ss_pred HHHHHHHHHHcCCCeEEEEecCCceEEEEe
Confidence 899999999999999999877765554443
No 21
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.75 E-value=2e-18 Score=150.95 Aligned_cols=191 Identities=13% Similarity=0.086 Sum_probs=127.3
Q ss_pred hhccCchhHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---
Q 044482 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--- 219 (345)
Q Consensus 144 ~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--- 219 (345)
|....|...+.+...+........+.+.+.++ ...+|||||||+|.++..++++.| +++++|+ |.+++.++
T Consensus 6 ~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~ 80 (227)
T 1ve3_A 6 YYRVFPTYTDINSQEYRSRIETLEPLLMKYMK---KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYA 80 (227)
T ss_dssp HHHHCSTTTCTTSHHHHHHHHHHHHHHHHSCC---SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH
T ss_pred HHHHhhhhhcccHHHHHHHHHHHHHHHHHhcC---CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHH
Confidence 33334443333333444333444444555544 367999999999999999999987 8999998 88877665
Q ss_pred -----CceEEeccCCc-CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCch---
Q 044482 220 -----CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSS--- 288 (345)
Q Consensus 220 -----ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~--- 288 (345)
+++++.+|+.+ +++.+ |+|++..++|++..++..++|+++++.|+| ||++++. +...+.......
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~-~~~~~~~~~~~~~~~ 156 (227)
T 1ve3_A 81 KSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKP---SGKFIMY-FTDLRELLPRLKESL 156 (227)
T ss_dssp HHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEE---EEEEEEE-EECHHHHGGGCCC--
T ss_pred HhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCC---CcEEEEE-ecChHHHHHHHHhhh
Confidence 68999999988 66643 999999998888888888999999999999 9999998 654221100000
Q ss_pred ----hhhhhhc-cchh----hhhhcCC-------CccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 289 ----INRNILT-LDIV----MYDLFPQ-------AKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 289 ----~~~~~~~-~d~~----~~~~~~~-------~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
..+.... .+.. .+....+ ....+ .+|.++|+++||+.+++..+....++|+..|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~~ 227 (227)
T 1ve3_A 157 VVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNPK 227 (227)
T ss_dssp -------CCEEEEETTTTEEEEEC-----CCEEEEECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEEC
T ss_pred hcccceeecccccCccccEEEEEeccchhhheeehhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCCC
Confidence 0000000 0000 0000000 01112 48999999999999999998777789988874
No 22
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.75 E-value=4.3e-18 Score=152.63 Aligned_cols=161 Identities=13% Similarity=0.058 Sum_probs=118.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC-CEEEecc-ccccCCh-
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG-QAIFTKS-VLLNWSD- 249 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~-D~i~~~~-vlh~~~d- 249 (345)
...+|||||||+|.++..++++.+ +++++|+ +.+++.++ +++++.+|+.+ +.+.. |+|++.. ++||+++
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~ 127 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQ 127 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCHH
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCCH
Confidence 457999999999999999998854 7999999 88888776 79999999988 55444 9999998 9999975
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhh--------------------hhhccchhhhhhcCC---
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINR--------------------NILTLDIVMYDLFPQ--- 306 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~--------------------~~~~~d~~~~~~~~~--- 306 (345)
++..++|+++++.|+| ||+++|. +...++.-.+..... ....+++.+.....+
T Consensus 128 ~~~~~~l~~~~~~L~p---gG~l~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (263)
T 3pfg_A 128 AELDAALERFAAHVLP---DGVVVVE-PWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGI 203 (263)
T ss_dssp HHHHHHHHHHHHTEEE---EEEEEEC-CCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHhcCC---CcEEEEE-eccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcE
Confidence 5677899999999999 9999887 665544321100000 000111111111111
Q ss_pred --------CccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEcCC
Q 044482 307 --------AKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKPK 345 (345)
Q Consensus 307 --------~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~~ 345 (345)
.+.+|.++|+++|++|||+++++........+++++|++
T Consensus 204 ~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~a 250 (263)
T 3pfg_A 204 THHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPGA 250 (263)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEECC
T ss_pred EEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecCC
Confidence 234689999999999999999987776778889999873
No 23
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.74 E-value=2.2e-17 Score=143.81 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=119.6
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCCc-CCCCC-CEEEe
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMFV-NVPSG-QAIFT 240 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~-~~p~~-D~i~~ 240 (345)
.+++.+. .....+|||||||+|.++..++++ +.+++++|+ +.+++.++ +++++.+|+.+ +.+.. |+|++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 3444444 445679999999999999999987 568999999 77877665 68999999988 55533 99999
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhcc--chh--hhhhcCCCccCCHHHHH
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTL--DIV--MYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~--d~~--~~~~~~~~~~rt~~e~~ 316 (345)
.+++|++++++...+|+++++.|+| ||++++. +...+...... ....... ... ..... ....++.++|+
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 185 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNK---GGKIVFA-DTIFADQDAYD--KTVEAAKQRGFHQLANDLQ-TEYYTRIPVMQ 185 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEE-EECBSSHHHHH--HHHHHHHHTTCHHHHHHHH-HSCCCBHHHHH
T ss_pred CcchhcCChHHHHHHHHHHHHhcCC---CCEEEEE-eccccChHHHH--HHHHHHHhCCCccchhhcc-hhhcCCHHHHH
Confidence 9999999999877899999999999 9999999 76543321100 0000000 000 00000 11334889999
Q ss_pred HHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 317 ALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 317 ~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
++|+++||+++.+.. .....++.+.|+
T Consensus 186 ~~l~~aGf~v~~~~~-~~~~w~~~~~~~ 212 (220)
T 3hnr_A 186 TIFENNGFHVTFTRL-NHFVWVMEATKQ 212 (220)
T ss_dssp HHHHHTTEEEEEEEC-SSSEEEEEEEEC
T ss_pred HHHHHCCCEEEEeec-cceEEEEeehhh
Confidence 999999998766654 456888888875
No 24
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.73 E-value=3.7e-17 Score=141.85 Aligned_cols=157 Identities=17% Similarity=0.061 Sum_probs=111.0
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCCcCCCCC--CEEEe
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMFVNVPSG--QAIFT 240 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~~~p~~--D~i~~ 240 (345)
.+++.+.......+|||||||+|.++..++++ ..+++++|+ +.+++.++ +++++.+|+.+..+.+ |+|++
T Consensus 36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~ 113 (218)
T 3ou2_A 36 AALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFF 113 (218)
T ss_dssp HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEE
T ss_pred HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEE
Confidence 44454443455679999999999999999998 568999998 88887765 7999999998865543 99999
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCC------CccCCHHH
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQ------AKGRTAGE 314 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~rt~~e 314 (345)
.+++||+++++...+|+++++.|+| ||++++. +...+......... ........-....+ ....+.++
T Consensus 114 ~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (218)
T 3ou2_A 114 AHWLAHVPDDRFEAFWESVRSAVAP---GGVVEFV-DVTDHERRLEQQDD--SEPEVAVRRTLQDGRSFRIVKVFRSPAE 187 (218)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-EECCCC--------------CEEEEECTTSCEEEEECCCCCHHH
T ss_pred echhhcCCHHHHHHHHHHHHHHcCC---CeEEEEE-eCCCCccccchhhh--cccccceeeecCCcchhhHhhcCCCHHH
Confidence 9999999998888999999999999 9999999 76543221100000 00000000000001 12358999
Q ss_pred HHHHHHHCCCCceEEEecC
Q 044482 315 FKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~~ 333 (345)
|.++++++||++......+
T Consensus 188 ~~~~l~~aGf~v~~~~~~~ 206 (218)
T 3ou2_A 188 LTERLTALGWSCSVDEVHP 206 (218)
T ss_dssp HHHHHHHTTEEEEEEEEET
T ss_pred HHHHHHHCCCEEEeeeccc
Confidence 9999999999955444433
No 25
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.71 E-value=6.6e-17 Score=145.51 Aligned_cols=154 Identities=12% Similarity=0.092 Sum_probs=119.6
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~ 234 (345)
...+++.++ .....+|||||||+|.++..+++++ +.+++++|+ +.+++.++ +++++.+|+.+ ++++
T Consensus 50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 456677776 6777899999999999999999987 679999999 77776554 59999999988 6664
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCH
Q 044482 235 G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTA 312 (345)
Q Consensus 235 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~ 312 (345)
+ |+|++..++||+++. ..+|+++++.|+| ||++++. +.......... .....+...... +.+..++.
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~-~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~ 196 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRP---GGTVAIA-DFVLLAPVEGA----KKEAVDAFRAGG-GVLSLGGI 196 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEE---EEEEEEE-EEEESSCCCHH----HHHHHHHHHHHH-TCCCCCCH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCC---CeEEEEE-EeeccCCCChh----HHHHHHHHHhhc-CccCCCCH
Confidence 4 999999999999876 5889999999999 9999999 87654332111 011112111122 25667899
Q ss_pred HHHHHHHHHCCCCceEEEecC
Q 044482 313 GEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 313 ~e~~~ll~~aGf~~~~~~~~~ 333 (345)
++|.++++++||+++++...+
T Consensus 197 ~~~~~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 197 DEYESDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHcCCeEEEEEECc
Confidence 999999999999998887653
No 26
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.71 E-value=5.4e-17 Score=142.93 Aligned_cols=161 Identities=16% Similarity=0.097 Sum_probs=116.3
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC-CEEEe-ccccccCCh
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG-QAIFT-KSVLLNWSD 249 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~-D~i~~-~~vlh~~~d 249 (345)
....+|||||||+|.++..++++++ +++++|+ +.+++.++ +++++.+|+.+ +.+.. |+|++ ..++||+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 3457999999999999999999986 7999999 88888776 79999999987 44444 99995 559999864
Q ss_pred -hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchh-hh-------------------hhhccchhhhhhcCCC-
Q 044482 250 -EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSI-NR-------------------NILTLDIVMYDLFPQA- 307 (345)
Q Consensus 250 -~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~-~~-------------------~~~~~d~~~~~~~~~~- 307 (345)
++...+|+++++.|+| ||++++. +...++...+... .+ .....++.++....++
T Consensus 117 ~~~~~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEP---GGVVVVE-PWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKG 192 (239)
T ss_dssp HHHHHHHHHHHHHTEEE---EEEEEEC-CCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTE
T ss_pred HHHHHHHHHHHHHhcCC---CeEEEEE-eccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCc
Confidence 6778999999999999 9999888 7665543211000 00 0000111111111111
Q ss_pred ----------ccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 308 ----------KGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 308 ----------~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
+.+|.++|+++|+++||+++.+....+...+++++|+
T Consensus 193 ~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K~ 239 (239)
T 3bxo_A 193 VRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVPA 239 (239)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred ceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEecC
Confidence 3468999999999999977666555566789999886
No 27
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.71 E-value=4.9e-17 Score=145.46 Aligned_cols=153 Identities=20% Similarity=0.251 Sum_probs=119.9
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC--
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG-- 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~-- 235 (345)
...+++.++ .....+|||||||+|.++..+++++ +.+++++|+ +.+++.++ +++++.+|+.+ +++.+
T Consensus 44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 345667666 6777899999999999999999987 679999999 77777654 68999999988 66644
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|+|++.+++||+++++...+|+++++.|+| ||++++. +...+.... .. ..+.- ..... +...++.++|
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~--~~----~~~~~-~~~~~-~~~~~~~~~~ 189 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKP---TGTLLIT-DYCATEKEN--WD----DEFKE-YVKQR-KYTLITVEEY 189 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-EEEESCGGG--CC----HHHHH-HHHHH-TCCCCCHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCC---CCEEEEE-EeccCCccc--ch----HHHHH-HHhcC-CCCCCCHHHH
Confidence 999999999999888889999999999999 9999999 876544111 00 01111 11111 4456789999
Q ss_pred HHHHHHCCCCceEEEecC
Q 044482 316 KALAMAAGFGTIKVICRS 333 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~~ 333 (345)
.++++++||+++++....
T Consensus 190 ~~~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 190 ADILTACNFKNVVSKDLS 207 (266)
T ss_dssp HHHHHHTTCEEEEEEECH
T ss_pred HHHHHHcCCeEEEEEeCC
Confidence 999999999999887653
No 28
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.71 E-value=4.3e-17 Score=140.24 Aligned_cols=145 Identities=12% Similarity=-0.002 Sum_probs=114.7
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC--CEEEeccccccCChhH
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQ 251 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~ 251 (345)
..+|||||||+|.++..++++ +.+++++|+ +.+++.++ +++++.+|+.+ +++.+ |+|++.+++||+++++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 579999999999999999988 458999999 88888776 89999999988 66644 9999999999999777
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEe
Q 044482 252 CLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVIC 331 (345)
Q Consensus 252 ~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~ 331 (345)
...+|+++++.|+| ||++++. +...+... . . .. ... ....++.++|.++|+++||+++++..
T Consensus 120 ~~~~l~~~~~~L~p---gG~l~i~-~~~~~~~~--~----~---~~----~~~-~~~~~~~~~~~~~l~~~Gf~~~~~~~ 181 (203)
T 3h2b_A 120 LPDALVALRMAVED---GGGLLMS-FFSGPSLE--P----M---YH----PVA-TAYRWPLPELAQALETAGFQVTSSHW 181 (203)
T ss_dssp HHHHHHHHHHTEEE---EEEEEEE-EECCSSCE--E----E---CC----SSS-CEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHcCC---CcEEEEE-EccCCchh--h----h---hc----hhh-hhccCCHHHHHHHHHHCCCcEEEEEe
Confidence 88999999999999 9999998 65433210 0 0 00 011 23457899999999999999999987
Q ss_pred cCC-ceEEEEEEcC
Q 044482 332 RSY-CYWVIEFYKP 344 (345)
Q Consensus 332 ~~~-~~~vi~~~k~ 344 (345)
.+. ++..+...|+
T Consensus 182 ~~~~p~~~l~~~~~ 195 (203)
T 3h2b_A 182 DPRFPHAYLTAEAS 195 (203)
T ss_dssp CTTSSEEEEEEEEC
T ss_pred cCCCcchhhhhhhh
Confidence 754 5566655543
No 29
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.71 E-value=2.9e-17 Score=146.97 Aligned_cols=152 Identities=19% Similarity=0.257 Sum_probs=115.1
Q ss_pred HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCC
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~ 234 (345)
....+++.++ .....+|||||||+|.++..++++.+ +++++|+ +.+++.++ +++++.+|+.+ ++++
T Consensus 25 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 25 DLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp CHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence 3455666666 66778999999999999999999876 8999998 88887654 58999999988 7774
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhc-CCCccCC
Q 044482 235 G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLF-PQAKGRT 311 (345)
Q Consensus 235 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~rt 311 (345)
+ |+|++..++||++|. ..+|++++++|+| ||++++. +...+..+ .. ...+........ .....++
T Consensus 102 ~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~~~-~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~ 169 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKK---GGQLLLV-DNSAPEND---AF---DVFYNYVEKERDYSHHRAWK 169 (260)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEE-EEEBCSSH---HH---HHHHHHHHHHHCTTCCCCCB
T ss_pred CCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCC---CCEEEEE-EcCCCCCH---HH---HHHHHHHHHhcCccccCCCC
Confidence 4 999999999999987 4889999999999 9999998 77654331 11 111111111111 1235678
Q ss_pred HHHHHHHHHHCCCCceEEEec
Q 044482 312 AGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 312 ~~e~~~ll~~aGf~~~~~~~~ 332 (345)
.++|.++|+++||+++++...
T Consensus 170 ~~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 170 KSDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEEe
Confidence 999999999999998877654
No 30
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.70 E-value=8.7e-17 Score=142.17 Aligned_cols=149 Identities=15% Similarity=0.227 Sum_probs=113.5
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-CceEEeccCCc---CCCCC--CEEEe
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-CVEHVEGDMFV---NVPSG--QAIFT 240 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-ri~~~~gd~~~---~~p~~--D~i~~ 240 (345)
..+.+.++.+....+|||||||+|.++..+++. +.+++++|+ +.+++.++ +++++.+|+.+ +++++ |+|++
T Consensus 30 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~ 107 (240)
T 3dli_A 30 ARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMI 107 (240)
T ss_dssp HHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEE
T ss_pred HHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEE
Confidence 334444443455689999999999999999998 457899999 88888887 79999999877 55644 99999
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHH
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAM 320 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~ 320 (345)
.+++||+++++...+|+++++.|+| ||++++. ..... . .. ...+. ..... ....++.+++.++++
T Consensus 108 ~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~----~-~~----~~~~~-~~~~~-~~~~~~~~~l~~~l~ 172 (240)
T 3dli_A 108 SHFVEHLDPERLFELLSLCYSKMKY---SSYIVIE-SPNPT----S-LY----SLINF-YIDPT-HKKPVHPETLKFILE 172 (240)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHHBCT---TCCEEEE-EECTT----S-HH----HHHHH-TTSTT-CCSCCCHHHHHHHHH
T ss_pred CCchhhCCcHHHHHHHHHHHHHcCC---CcEEEEE-eCCcc----h-hH----HHHHH-hcCcc-ccccCCHHHHHHHHH
Confidence 9999999988888999999999999 9999988 54311 1 11 11111 11111 345678999999999
Q ss_pred HCCCCceEEEecC
Q 044482 321 AAGFGTIKVICRS 333 (345)
Q Consensus 321 ~aGf~~~~~~~~~ 333 (345)
++||+++++....
T Consensus 173 ~aGf~~~~~~~~~ 185 (240)
T 3dli_A 173 YLGFRDVKIEFFE 185 (240)
T ss_dssp HHTCEEEEEEEEC
T ss_pred HCCCeEEEEEEec
Confidence 9999998887654
No 31
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.70 E-value=1.2e-16 Score=145.78 Aligned_cols=151 Identities=17% Similarity=0.248 Sum_probs=116.0
Q ss_pred HHHHHHHhc----cCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc
Q 044482 166 VMKKILEIY----KGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV 230 (345)
Q Consensus 166 ~~~~i~~~~----~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~ 230 (345)
....+++.+ + .....+|||||||+|.++..+++++ +.+++++|+ +.+++.++ +++++.+|+.+
T Consensus 66 ~~~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 143 (297)
T 2o57_A 66 TDEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE 143 (297)
T ss_dssp HHHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred HHHHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc
Confidence 344566666 4 6677899999999999999999987 468999999 77777654 68999999988
Q ss_pred -CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCC
Q 044482 231 -NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA 307 (345)
Q Consensus 231 -~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 307 (345)
+++++ |+|++..++||+++. ..+|++++++|+| ||++++. +...+....... ....++ ... ..
T Consensus 144 ~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~---~~~~~~----~~~-~~ 209 (297)
T 2o57_A 144 IPCEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKP---RGVMAIT-DPMKEDGIDKSS---IQPILD----RIK-LH 209 (297)
T ss_dssp CSSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEE-EEEECTTCCGGG---GHHHHH----HHT-CS
T ss_pred CCCCCCCEeEEEecchhhhcCCH--HHHHHHHHHHcCC---CeEEEEE-EeccCCCCchHH---HHHHHH----Hhc-CC
Confidence 76654 999999999999984 6899999999999 9999999 876554322110 111111 111 22
Q ss_pred ccCCHHHHHHHHHHCCCCceEEEec
Q 044482 308 KGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 308 ~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
...+.++|.++++++||+++++...
T Consensus 210 ~~~~~~~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 210 DMGSLGLYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp SCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred CCCCHHHHHHHHHHCCCeEEEEEEC
Confidence 3468999999999999999988765
No 32
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.70 E-value=9.1e-17 Score=145.19 Aligned_cols=137 Identities=16% Similarity=0.158 Sum_probs=107.4
Q ss_pred cccceEEecCCc---cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCcC------------CC-C
Q 044482 179 ELKKLVDVASCL---GANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFVN------------VP-S 234 (345)
Q Consensus 179 ~~~~vlDiGgG~---G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~~------------~p-~ 234 (345)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.|++.++ +++++.+|+.++ ++ .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 447999999999 999888888999999999999 89988765 799999999762 23 2
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHH
Q 044482 235 G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAG 313 (345)
Q Consensus 235 ~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~ 313 (345)
. |+|++..+||++++++...+|++++++|+| ||+|++. +...+. +.. .....+....... ....|+.+
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~-~~~~~~---~~~---~~~~~~~~~~~~~-~~~~~s~~ 225 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMT-SLVDTG---LPA---QQKLARITRENLG-EGWARTPE 225 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEE-EEBCSS---CHH---HHHHHHHHHHHHS-CCCCBCHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEE-EecCcc---hHH---HHHHHHHHHhcCC-CCccCCHH
Confidence 3 999999999999998888999999999999 9999999 765432 111 1112232222222 45679999
Q ss_pred HHHHHHHHCCCCceE
Q 044482 314 EFKALAMAAGFGTIK 328 (345)
Q Consensus 314 e~~~ll~~aGf~~~~ 328 (345)
|++++| +||++++
T Consensus 226 ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 226 EIERQF--GDFELVE 238 (274)
T ss_dssp HHHHTT--TTCEECT
T ss_pred HHHHHh--CCCeEcc
Confidence 999999 5997765
No 33
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.70 E-value=1.8e-16 Score=145.78 Aligned_cols=163 Identities=9% Similarity=0.021 Sum_probs=121.3
Q ss_pred HHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------Cce
Q 044482 154 LFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVE 222 (345)
Q Consensus 154 ~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~ 222 (345)
.|.+ +..........+++.++......+|||||||+|.++..+++++ +.+++++|+ +.+++.++ +++
T Consensus 93 ~f~~-~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~ 170 (312)
T 3vc1_A 93 VIAE-LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVR 170 (312)
T ss_dssp HHHH-HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEE
T ss_pred HHhh-hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceE
Confidence 3443 4444444455667766545667899999999999999999986 578999999 88877665 599
Q ss_pred EEeccCCc-CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchh
Q 044482 223 HVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIV 299 (345)
Q Consensus 223 ~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~ 299 (345)
++.+|+.+ +++.+ |+|++..++|+++ ...+|+++++.|+| ||++++. +....+...... ...+..
T Consensus 171 ~~~~d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~-----~~~~~~ 238 (312)
T 3vc1_A 171 SRVCNMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKV---GGRYVTI-TGCWNPRYGQPS-----KWVSQI 238 (312)
T ss_dssp EEECCTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEE---EEEEEEE-EEEECTTTCSCC-----HHHHHH
T ss_pred EEECChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCC---CcEEEEE-Eccccccccchh-----HHHHHH
Confidence 99999988 66643 9999999999994 56899999999999 9999999 766554321111 011111
Q ss_pred hhhhcCCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 300 MYDLFPQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 300 ~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
.... ....++.++|.++++++||+++++...
T Consensus 239 ~~~~--~~~~~s~~~~~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 239 NAHF--ECNIHSRREYLRAMADNRLVPHTIVDL 269 (312)
T ss_dssp HHHH--TCCCCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred Hhhh--cCCCCCHHHHHHHHHHCCCEEEEEEeC
Confidence 1111 123678999999999999999988765
No 34
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.70 E-value=6.6e-17 Score=143.79 Aligned_cols=147 Identities=14% Similarity=0.189 Sum_probs=116.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC--
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG-- 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~-- 235 (345)
...+++.++ .....+|||||||+|.++..++++. ..+++++|+ +.+++.++ +++++.+|+.+ +++.+
T Consensus 82 ~~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 82 SRNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence 345666665 5567899999999999999999887 457999998 78877665 58999999987 66543
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|+|++.+++||+++++...+|+++++.|+| ||++++. +....... ...+. . .....++.++|
T Consensus 160 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~---------~~~~~----~-~~~~~~~~~~~ 221 (254)
T 1xtp_A 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFK-ENCSTGDR---------FLVDK----E-DSSLTRSDIHY 221 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-EEBC--CC---------EEEET----T-TTEEEBCHHHH
T ss_pred EEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEE-ecCCCccc---------ceecc----c-CCcccCCHHHH
Confidence 999999999999998889999999999999 9999999 76443221 01110 1 13345789999
Q ss_pred HHHHHHCCCCceEEEecC
Q 044482 316 KALAMAAGFGTIKVICRS 333 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~~ 333 (345)
.++|+++||+++++....
T Consensus 222 ~~~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 222 KRLFNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHHHHTCCEEEEEECT
T ss_pred HHHHHHCCCEEEEeeecC
Confidence 999999999999987664
No 35
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.69 E-value=1.8e-16 Score=143.85 Aligned_cols=160 Identities=16% Similarity=0.151 Sum_probs=118.7
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~ 235 (345)
...+++.++ .....+|||||||+|.++..++++++ .+++++|+ +.+++.++ +++++.+|+.+ +|..
T Consensus 53 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~ 129 (287)
T 1kpg_A 53 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEP 129 (287)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCC
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCC
Confidence 345667666 66778999999999999999998775 49999999 77776554 68999999865 4443
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCC-----CchhhhhhhccchhhhhhcCCCcc
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPE-----FSSINRNILTLDIVMYDLFPQAKG 309 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~ 309 (345)
|+|++..++||+++++...+|+++++.|+| ||++++. +...+.... .+.........+.......+++..
T Consensus 130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (287)
T 1kpg_A 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLH-TITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRL 205 (287)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEE-EEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCC
T ss_pred eeEEEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEE-EecCCCccccccccccccccccchhhhHHheeCCCCCC
Confidence 999999999999877778999999999999 9999999 776543211 000000001111111122346777
Q ss_pred CCHHHHHHHHHHCCCCceEEEecC
Q 044482 310 RTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 310 rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
++.+++.++++++||+++++...+
T Consensus 206 ~s~~~~~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 206 PSIPMVQECASANGFTVTRVQSLQ 229 (287)
T ss_dssp CCHHHHHHHHHTTTCEEEEEEECH
T ss_pred CCHHHHHHHHHhCCcEEEEEEeCc
Confidence 899999999999999999887653
No 36
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.69 E-value=5.2e-17 Score=148.98 Aligned_cols=163 Identities=14% Similarity=0.177 Sum_probs=118.9
Q ss_pred cccccceEEecCCccHHHHHHH-HHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCC-CEEEecc
Q 044482 177 FKELKKLVDVASCLGANMSLIV-NTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG-QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~-~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~-D~i~~~~ 242 (345)
.....+|||||||+|.++..++ ..+|+.+++++|+ +.+++.++ +++++.+|+.+ +++.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4566899999999999999996 6789999999999 88887665 49999999988 55544 9999999
Q ss_pred ccccCChhH-HHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccc--------hhhhhhcCCC--ccCC
Q 044482 243 VLLNWSDEQ-CLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLD--------IVMYDLFPQA--KGRT 311 (345)
Q Consensus 243 vlh~~~d~~-~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d--------~~~~~~~~~~--~~rt 311 (345)
++||+++.+ ...+|+++++.|+| ||++++. +...+...... ..+.....+ .........+ ..++
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKP---GGALVTS-FLTPPPALSPD-SPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRT 270 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEE-CCCCCTTTCTT-CCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCC
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEE-ecCCCCccccc-ccceeeccccchhhhhhhHHHHHHhhhhhccCC
Confidence 999996554 45799999999999 9999999 76654332211 000000000 0011111011 3479
Q ss_pred HHHHHHHHHHCCCCceEEEecC-CceEEEEEEcC
Q 044482 312 AGEFKALAMAAGFGTIKVICRS-YCYWVIEFYKP 344 (345)
Q Consensus 312 ~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k~ 344 (345)
.+++.++|+++||+++++.... .....+.++||
T Consensus 271 ~~~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 271 HAQTRAQLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred HHHHHHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 9999999999999999988654 34456777776
No 37
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.69 E-value=3.5e-16 Score=143.12 Aligned_cols=160 Identities=16% Similarity=0.225 Sum_probs=121.4
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~ 235 (345)
...+++.++ .....+|||||||+|.++..++++++ .+++++|+ +.+++.++ +++++.+|+.+. +..
T Consensus 61 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 137 (302)
T 3hem_A 61 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP 137 (302)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred HHHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence 445677776 67778999999999999999999987 79999999 88877665 588999998764 433
Q ss_pred -CEEEeccccccCCh-------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhh-----hhhhccchhhhh
Q 044482 236 -QAIFTKSVLLNWSD-------EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSIN-----RNILTLDIVMYD 302 (345)
Q Consensus 236 -D~i~~~~vlh~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~-----~~~~~~d~~~~~ 302 (345)
|+|++..++||++| +....+|+++++.|+| ||++++. +...++........ ......++....
T Consensus 138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (302)
T 3hem_A 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLH-TITIPDKEEAQELGLTSPMSLLRFIKFILTE 213 (302)
T ss_dssp CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEE-EEECCCHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEE-EEeccCccchhhccccccccccchHHHHHHh
Confidence 99999999999955 5677999999999999 9999999 77655331100000 000001222222
Q ss_pred hcCCCccCCHHHHHHHHHHCCCCceEEEecC
Q 044482 303 LFPQAKGRTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 303 ~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
..+++..++.+++.++++++||+++++...+
T Consensus 214 ~~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 214 IFPGGRLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp TCTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred cCCCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 3457788999999999999999999887664
No 38
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.69 E-value=1.6e-16 Score=140.56 Aligned_cols=154 Identities=14% Similarity=0.156 Sum_probs=117.2
Q ss_pred HHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CC
Q 044482 164 AIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NV 232 (345)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~ 232 (345)
.+....+++.++ .....+|||||||+|.++..+++..+ +++++|+ +.+++.++ +++++.+|+.+ ++
T Consensus 7 ~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 83 (239)
T 1xxl_A 7 HHSLGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF 83 (239)
T ss_dssp HHHHHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS
T ss_pred CCCcchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCC
Confidence 344556777777 77888999999999999999999875 7999998 77877654 58999999987 66
Q ss_pred CCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchh-hhhhcCCCcc
Q 044482 233 PSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIV-MYDLFPQAKG 309 (345)
Q Consensus 233 p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~ 309 (345)
+++ |+|++.+++||+++. ..+|++++++|+| ||++++. +...+... .. ....... .+........
T Consensus 84 ~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~ 151 (239)
T 1xxl_A 84 PDDSFDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLV-DHYAPEDP---VL---DEFVNHLNRLRDPSHVRE 151 (239)
T ss_dssp CTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEE-EECBCSSH---HH---HHHHHHHHHHHCTTCCCC
T ss_pred CCCcEEEEEECCchhhccCH--HHHHHHHHHHcCC---CcEEEEE-EcCCCCCh---hH---HHHHHHHHHhccccccCC
Confidence 643 999999999999876 5889999999999 9999999 77655331 11 1111111 1111112456
Q ss_pred CCHHHHHHHHHHCCCCceEEEec
Q 044482 310 RTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 310 rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
++.++|.++|+++||+++++...
T Consensus 152 ~~~~~~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 152 SSLSEWQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp CBHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCHHHHHHHHHHCCCcEEEEEee
Confidence 78999999999999998877654
No 39
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.67 E-value=1.6e-16 Score=143.29 Aligned_cols=149 Identities=16% Similarity=0.236 Sum_probs=112.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC--CEEEeccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG--QAIFTKSV 243 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~--D~i~~~~v 243 (345)
+....+|||||||+|.++..+++.+|+.+++++|+ +.+++.++ +++++.+|+.+ +++.+ |+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56678999999999999999999999999999999 77877664 68999999988 66544 99999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccch--hhhhhcCCCccCCHHHHHHHHHH
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDI--VMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
+|++++.. .+|+++++.|+| ||.+++. +.........+........... ...... ++..++..++.++|++
T Consensus 115 l~~~~~~~--~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~ 187 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKP---GGTITVI-EGDHGSCYFHPEGKKAIEAWNCLIRVQAYM-KGNSLVGRQIYPLLQE 187 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEE---EEEEEEE-EECGGGCEEESCCHHHHHHHHHHHHHHHHT-TCCTTGGGGHHHHHHH
T ss_pred hhhcCCHH--HHHHHHHHHcCC---CcEEEEE-EcCCCCceECCCcHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHH
Confidence 99999875 889999999999 9999998 7533211000000000011111 111222 5666788999999999
Q ss_pred CCCCceEEEec
Q 044482 322 AGFGTIKVICR 332 (345)
Q Consensus 322 aGf~~~~~~~~ 332 (345)
+||+++++...
T Consensus 188 aGf~~v~~~~~ 198 (276)
T 3mgg_A 188 SGFEKIRVEPR 198 (276)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCCeEEEeeE
Confidence 99999888654
No 40
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.67 E-value=1.1e-16 Score=133.71 Aligned_cols=146 Identities=10% Similarity=0.064 Sum_probs=116.1
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCcCCCCC--CEEEec
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFVNVPSG--QAIFTK 241 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~~~p~~--D~i~~~ 241 (345)
.+++.++ .....+|||||||+|.++..++++.. +++++|+ +.+++.++ +++++.+| .+++.+ |+|++.
T Consensus 8 ~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~ 82 (170)
T 3i9f_A 8 EYLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFA 82 (170)
T ss_dssp TTHHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEE
T ss_pred HHHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEc
Confidence 3445555 66678999999999999999999874 8999998 77877765 79999999 455543 999999
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
+++|++++. ..+|+++++.|+| ||++++. +.........+. ....++.++|+++++
T Consensus 83 ~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~- 138 (170)
T 3i9f_A 83 NSFHDMDDK--QHVISEVKRILKD---DGRVIII-DWRKENTGIGPP-----------------LSIRMDEKDYMGWFS- 138 (170)
T ss_dssp SCSTTCSCH--HHHHHHHHHHEEE---EEEEEEE-EECSSCCSSSSC-----------------GGGCCCHHHHHHHTT-
T ss_pred cchhcccCH--HHHHHHHHHhcCC---CCEEEEE-EcCccccccCch-----------------HhhhcCHHHHHHHHh-
Confidence 999999765 5899999999999 9999999 776543322110 112268999999999
Q ss_pred CCCCceEEEecCCceEEEEEEcC
Q 044482 322 AGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 322 aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
||+++++.........+.+.++
T Consensus 139 -Gf~~~~~~~~~~~~~~l~~~~~ 160 (170)
T 3i9f_A 139 -NFVVEKRFNPTPYHFGLVLKRK 160 (170)
T ss_dssp -TEEEEEEECSSTTEEEEEEEEC
T ss_pred -CcEEEEccCCCCceEEEEEecC
Confidence 9999999998877777777764
No 41
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.67 E-value=2.7e-16 Score=140.02 Aligned_cols=150 Identities=11% Similarity=0.034 Sum_probs=113.7
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~ 234 (345)
...+++.++ .....+|||||||+|.++..+++++ +.+++++|+ +.+++.++ +++++.+|+.+ +.+.
T Consensus 25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 345566666 6677899999999999999999988 678999999 88877664 59999999987 4433
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHH
Q 044482 235 G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAG 313 (345)
Q Consensus 235 ~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~ 313 (345)
. |+|++..++|++++. .++|++++++|+| ||++++. +............ ..... ... ....++.+
T Consensus 103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~-~~~~~~~~~~~~~--~~~~~-----~~~-~~~~~~~~ 168 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIG-EPYWRQLPATEEI--AQACG-----VSS-TSDFLTLP 168 (256)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEE-EEEETTCCSSHHH--HHTTT-----CSC-GGGSCCHH
T ss_pred CCCEEEECCChHhcCCH--HHHHHHHHHHcCC---CeEEEEe-cCcccCCCChHHH--HHHHh-----ccc-ccccCCHH
Confidence 3 999999999999875 5889999999999 9999999 7665443221110 00000 000 12457899
Q ss_pred HHHHHHHHCCCCceEEEec
Q 044482 314 EFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~ 332 (345)
+|.++++++||+++++...
T Consensus 169 ~~~~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 169 GLVGAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHHHHTTTBCCCEEEEC
T ss_pred HHHHHHHHCCCeeEEEEeC
Confidence 9999999999999887654
No 42
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.67 E-value=1.5e-16 Score=140.72 Aligned_cols=135 Identities=13% Similarity=0.128 Sum_probs=109.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC--CEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG--QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~--D~i~~~~vlh 245 (345)
...+|||||||+|.++..++++. ..+++++|+ +.+++.++ +++++.+|+.+ +.+.+ |+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 46799999999999999999887 568999999 88887765 37899999877 55543 9999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCC
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~ 325 (345)
++++++...+|+++++.|+| ||++++. +...+. .. .++ .. .+...++.++|.++++++||+
T Consensus 158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~---~~-------~~~----~~-~~~~~~~~~~~~~~l~~aGf~ 218 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRP---NGIIVIK-DNMAQE---GV-------ILD----DV-DSSVCRDLDVVRRIICSAGLS 218 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEE-EEEBSS---SE-------EEE----TT-TTEEEEBHHHHHHHHHHTTCC
T ss_pred hCCHHHHHHHHHHHHHhcCC---CeEEEEE-EccCCC---cc-------eec----cc-CCcccCCHHHHHHHHHHcCCe
Confidence 99998888999999999999 9999999 776543 10 111 01 133456899999999999999
Q ss_pred ceEEEecC
Q 044482 326 TIKVICRS 333 (345)
Q Consensus 326 ~~~~~~~~ 333 (345)
++++....
T Consensus 219 ~~~~~~~~ 226 (241)
T 2ex4_A 219 LLAEERQE 226 (241)
T ss_dssp EEEEEECC
T ss_pred EEEeeecC
Confidence 99987664
No 43
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.66 E-value=1.1e-15 Score=140.94 Aligned_cols=159 Identities=14% Similarity=0.229 Sum_probs=119.2
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~ 235 (345)
...+++.++ .....+|||||||+|.++..+++++ +.+++++|+ +.+++.++ +++++.+|+.+ +|..
T Consensus 79 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~ 155 (318)
T 2fk8_A 79 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEP 155 (318)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCC
Confidence 445677766 6677899999999999999999987 569999999 77777665 48999999865 3444
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCc----hhh-hhhhccchhhhhhcCCCcc
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFS----SIN-RNILTLDIVMYDLFPQAKG 309 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~----~~~-~~~~~~d~~~~~~~~~~~~ 309 (345)
|+|++..++||+++++...+|+++++.|+| ||++++. +...+...... ... ......+.......+++..
T Consensus 156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (318)
T 2fk8_A 156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQ-SSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRL 231 (318)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEE-EEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred cCEEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEE-EeccCCchhhhhccccccccccchhhHHHHhcCCCCcC
Confidence 999999999999877778999999999999 9999999 77654321000 000 0000112211122346777
Q ss_pred CCHHHHHHHHHHCCCCceEEEec
Q 044482 310 RTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 310 rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
++.+++.++++++||+++++...
T Consensus 232 ~s~~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 232 PSTEMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp CCHHHHHHHHHHTTCBCCCCEEC
T ss_pred CCHHHHHHHHHhCCCEEEEEEec
Confidence 89999999999999999887665
No 44
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.65 E-value=6.4e-16 Score=137.70 Aligned_cols=148 Identities=14% Similarity=0.097 Sum_probs=112.3
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCC-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~- 235 (345)
.+++.+.......+|||||||+|.++..+++++|. +++++|+ +.+++.++ +++++.+|+.+ +++.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 114 (257)
T 3f4k_A 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEE 114 (257)
T ss_dssp HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTC
T ss_pred HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCC
Confidence 44555533566679999999999999999999986 9999999 77877665 49999999977 66643
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|+|++..++||++. ..+|+++++.|+| ||++++. +.......... ...+...- . ....++.++
T Consensus 115 fD~v~~~~~l~~~~~---~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~------~~~~~~~~-~--~~~~~~~~~ 178 (257)
T 3f4k_A 115 LDLIWSEGAIYNIGF---ERGMNEWSKYLKK---GGFIAVS-EASWFTSERPA------EIEDFWMD-A--YPEISVIPT 178 (257)
T ss_dssp EEEEEEESCSCCCCH---HHHHHHHHTTEEE---EEEEEEE-EEEESSSCCCH------HHHHHHHH-H--CTTCCBHHH
T ss_pred EEEEEecChHhhcCH---HHHHHHHHHHcCC---CcEEEEE-EeeccCCCChH------HHHHHHHH-h--CCCCCCHHH
Confidence 99999999999942 4789999999999 9999999 76533322111 11111111 1 123568999
Q ss_pred HHHHHHHCCCCceEEEecC
Q 044482 315 FKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~~ 333 (345)
|.++++++||+++++...+
T Consensus 179 ~~~~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 179 CIDKMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHHHHTTEEEEEEEECC
T ss_pred HHHHHHHCCCeEEEEEECC
Confidence 9999999999999887665
No 45
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.65 E-value=1.8e-15 Score=131.72 Aligned_cols=162 Identities=12% Similarity=0.037 Sum_probs=111.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------CceEEeccCCc-CC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------CVEHVEGDMFV-NV 232 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~-~~ 232 (345)
.+++.+. .....+|||||||+|.++..++++.|..+++++|+ +.+++.++ +++++.+|+.. +.
T Consensus 20 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (219)
T 3jwg_A 20 TVVAVLK-SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK 98 (219)
T ss_dssp HHHHHHH-HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG
T ss_pred HHHHHHh-hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc
Confidence 3444444 34567999999999999999999999899999999 77877664 58999999865 44
Q ss_pred CC-C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccC
Q 044482 233 PS-G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGR 310 (345)
Q Consensus 233 p~-~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r 310 (345)
+. . |+|++..++||+++++..++|+++++.|+| ||.+++. ........ ............ .....+
T Consensus 99 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~~i~~-~~~~~~~~-------~~~~~~~~~~~~-~~~~~~ 166 (219)
T 3jwg_A 99 RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRP---QTVIVST-PNKEYNFH-------YGNLFEGNLRHR-DHRFEW 166 (219)
T ss_dssp GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEE-EBGGGGGC-------CCCT-----GGG-CCTTSB
T ss_pred ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCC---CEEEEEc-cchhhhhh-------hcccCccccccc-Cceeee
Confidence 32 3 999999999999999888999999999999 9966655 32111000 000000000011 123456
Q ss_pred CHHHHH----HHHHHCCCCceEEEecC-------CceEEEEEEcC
Q 044482 311 TAGEFK----ALAMAAGFGTIKVICRS-------YCYWVIEFYKP 344 (345)
Q Consensus 311 t~~e~~----~ll~~aGf~~~~~~~~~-------~~~~vi~~~k~ 344 (345)
+.++++ ++++++||++... .+. ....+-.++|.
T Consensus 167 ~~~~l~~~~~~l~~~~Gf~v~~~-~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 167 TRKEFQTWAVKVAEKYGYSVRFL-QIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp CHHHHHHHHHHHHHHHTEEEEEE-EESCCCTTSCCSEEEEEEEEC
T ss_pred cHHHHHHHHHHHHHHCCcEEEEE-ecCCccccCCCCeEEEEEecc
Confidence 889998 7889999976443 221 23456666653
No 46
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.64 E-value=5.1e-16 Score=136.70 Aligned_cols=128 Identities=15% Similarity=0.169 Sum_probs=104.9
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC-C-CEEEeccccccC
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS-G-QAIFTKSVLLNW 247 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~-~-D~i~~~~vlh~~ 247 (345)
.+|||||||+|.++..+++ +..+++++|+ +.+++.++ +++++.+|+.+..+. . |+|++..++|++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 145 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAI 145 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTS
T ss_pred CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcC
Confidence 5999999999999999976 5678999999 78877665 489999999984443 3 999999999999
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCce
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTI 327 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~ 327 (345)
++++...+|+++++.|+| ||++++. +......... ....++.++|.++|+++||+++
T Consensus 146 ~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~ 202 (235)
T 3lcc_A 146 EPEMRPAWAKSMYELLKP---DGELITL-MYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAV 202 (235)
T ss_dssp CGGGHHHHHHHHHHHEEE---EEEEEEE-ECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEE
T ss_pred CHHHHHHHHHHHHHHCCC---CcEEEEE-EecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEE
Confidence 988888999999999999 9999998 6543322111 0112578999999999999999
Q ss_pred EEEecC
Q 044482 328 KVICRS 333 (345)
Q Consensus 328 ~~~~~~ 333 (345)
++...+
T Consensus 203 ~~~~~~ 208 (235)
T 3lcc_A 203 SVEENP 208 (235)
T ss_dssp EEEECT
T ss_pred EEEecC
Confidence 987765
No 47
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.64 E-value=2.8e-16 Score=143.64 Aligned_cols=171 Identities=9% Similarity=0.021 Sum_probs=117.2
Q ss_pred HHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------CceEEeccCCc-
Q 044482 165 IVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------CVEHVEGDMFV- 230 (345)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~- 230 (345)
.....+++.++ .. ..+|||||||+|.++..++++ +.+++++|+ +.+++.++ +++++.+|+.+
T Consensus 70 ~~~~~~~~~~~-~~-~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (299)
T 3g2m_A 70 SEAREFATRTG-PV-SGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF 145 (299)
T ss_dssp HHHHHHHHHHC-CC-CSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC
T ss_pred HHHHHHHHhhC-CC-CCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC
Confidence 34455666665 32 349999999999999999988 468999999 88887665 38899999998
Q ss_pred CCCCC-CEEEec-cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchh---h-----------hh--
Q 044482 231 NVPSG-QAIFTK-SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSI---N-----------RN-- 292 (345)
Q Consensus 231 ~~p~~-D~i~~~-~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~---~-----------~~-- 292 (345)
+.+.. |+|++. .++|++++++..++|+++++.|+| ||++++. ....+........ . +.
T Consensus 146 ~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 221 (299)
T 3g2m_A 146 ALDKRFGTVVISSGSINELDEADRRGLYASVREHLEP---GGKFLLS-LAMSEAAESEPLERKQELPGRSGRRYVLHVRH 221 (299)
T ss_dssp CCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEE---EEEEEEE-EECCHHHHSCCCCC-------------CCEEE
T ss_pred CcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCC---CcEEEEE-eecCccccccchhccceeecCCCcEEEEEEEE
Confidence 55444 988864 778888888889999999999999 9999887 5443211000000 0 00
Q ss_pred h---hccchhhhhhc-CC---------CccCCHHHHHHHHHHCCCCceEEEecCC------ceEEEEEEc
Q 044482 293 I---LTLDIVMYDLF-PQ---------AKGRTAGEFKALAMAAGFGTIKVICRSY------CYWVIEFYK 343 (345)
Q Consensus 293 ~---~~~d~~~~~~~-~~---------~~~rt~~e~~~ll~~aGf~~~~~~~~~~------~~~vi~~~k 343 (345)
. ....+...... .+ -+.+|.++|+++|+++||+++++.+.+. ...++++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~~ 291 (299)
T 3g2m_A 222 LPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAVM 291 (299)
T ss_dssp EEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEEC
T ss_pred eccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehhh
Confidence 0 00000000000 00 1246999999999999999999988752 246777765
No 48
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.64 E-value=1.1e-15 Score=132.14 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=106.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---CceEEeccCCc-CCCC-C-CEEEeccccccCCh
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---CVEHVEGDMFV-NVPS-G-QAIFTKSVLLNWSD 249 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---ri~~~~gd~~~-~~p~-~-D~i~~~~vlh~~~d 249 (345)
+....+|||||||+|.++..++++ ..+++++|+ +.+++.++ +++++.+|+.+ + +. . |+|++.+++||+++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEEECSCGGGSCH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEEecCchhhcCH
Confidence 345679999999999999999987 568999999 88888877 78899999887 5 43 3 99999999999998
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCC-CCceE
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAG-FGTIK 328 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aG-f~~~~ 328 (345)
++...+|+++++.|+| ||++++. ......... .... .....++.++|.++++++| |++++
T Consensus 118 ~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~--------~~~~-------~~~~~~~~~~~~~~l~~aG~f~~~~ 178 (211)
T 3e23_A 118 DELADVLKLIWRALKP---GGLFYAS-YKSGEGEGR--------DKLA-------RYYNYPSEEWLRARYAEAGTWASVA 178 (211)
T ss_dssp HHHHHHHHHHHHHEEE---EEEEEEE-EECCSSCEE--------CTTS-------CEECCCCHHHHHHHHHHHCCCSEEE
T ss_pred HHHHHHHHHHHHhcCC---CcEEEEE-EcCCCcccc--------cccc-------hhccCCCHHHHHHHHHhCCCcEEEE
Confidence 8889999999999999 9999888 533221100 0000 0112468999999999999 99998
Q ss_pred EEec
Q 044482 329 VICR 332 (345)
Q Consensus 329 ~~~~ 332 (345)
+...
T Consensus 179 ~~~~ 182 (211)
T 3e23_A 179 VESS 182 (211)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8654
No 49
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.64 E-value=5.3e-16 Score=140.76 Aligned_cols=157 Identities=12% Similarity=0.098 Sum_probs=112.0
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-Q 236 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D 236 (345)
.+++.+.......+|||||||+|.++..+++.+|+ .+++++|+ |.+++.++ +++++.+|+.+ +.+.. |
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 91 (284)
T 3gu3_A 12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 91 (284)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCee
Confidence 34444432566789999999999999999999995 89999999 77776554 68999999988 55444 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC-----C---CCCCCchhhhhhhccchhh--hhhcCC
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL-----P---ESPEFSSINRNILTLDIVM--YDLFPQ 306 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~-----~---~~~~~~~~~~~~~~~d~~~--~~~~~~ 306 (345)
+|++.+++|++++. ..+|+++++.|+| ||++++. +... . ++...+..........+.. .... +
T Consensus 92 ~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 164 (284)
T 3gu3_A 92 IAICHAFLLHMTTP--ETMLQKMIHSVKK---GGKIICF-EPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRN-G 164 (284)
T ss_dssp EEEEESCGGGCSSH--HHHHHHHHHTEEE---EEEEEEE-ECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHT-C
T ss_pred EEEECChhhcCCCH--HHHHHHHHHHcCC---CCEEEEE-ecchhcccccceecCcchhhccchHHHHHHHHHHhhhh-c
Confidence 99999999999887 4899999999999 9999999 7651 1 1111000000001111111 1122 4
Q ss_pred CccCCHHHHHHHHHHCCCCceEEEec
Q 044482 307 AKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 307 ~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
....+..++.++|++|||+.+++...
T Consensus 165 ~~~~~~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 165 KDGNIGMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp CCTTGGGTHHHHHHHTTCEEEEEEEC
T ss_pred ccccHHHHHHHHHHHcCCCeEEEEEc
Confidence 44566778999999999999877543
No 50
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.64 E-value=7.8e-16 Score=138.23 Aligned_cols=148 Identities=16% Similarity=0.101 Sum_probs=112.6
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCC-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~- 235 (345)
.+++.++......+|||||||+|.++..+++. |..+++++|+ +.+++.++ +++++.+|+.+ +++.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 34444443556789999999999999999998 8889999999 78777665 59999999987 65544
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|+|++..++|+++ . ..+|+++++.|+| ||++++. +........... ..+... .. ....++.++
T Consensus 115 fD~i~~~~~~~~~~-~--~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~------~~~~~~-~~--~~~~~~~~~ 178 (267)
T 3kkz_A 115 LDLIWSEGAIYNIG-F--ERGLNEWRKYLKK---GGYLAVS-ECSWFTDERPAE------INDFWM-DA--YPEIDTIPN 178 (267)
T ss_dssp EEEEEESSCGGGTC-H--HHHHHHHGGGEEE---EEEEEEE-EEEESSSCCCHH------HHHHHH-HH--CTTCEEHHH
T ss_pred EEEEEEcCCceecC-H--HHHHHHHHHHcCC---CCEEEEE-EeeecCCCChHH------HHHHHH-Hh--CCCCCCHHH
Confidence 9999999999993 3 5789999999999 9999999 775433322111 111111 11 224568999
Q ss_pred HHHHHHHCCCCceEEEecC
Q 044482 315 FKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~~ 333 (345)
+.++++++||+++++...+
T Consensus 179 ~~~~l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 179 QVAKIHKAGYLPVATFILP 197 (267)
T ss_dssp HHHHHHHTTEEEEEEEECC
T ss_pred HHHHHHHCCCEEEEEEECC
Confidence 9999999999999887765
No 51
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.63 E-value=8.6e-16 Score=135.69 Aligned_cols=146 Identities=14% Similarity=0.042 Sum_probs=104.9
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCCcCCCCC--CEEEeccccccCCh
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMFVNVPSG--QAIFTKSVLLNWSD 249 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~~~p~~--D~i~~~~vlh~~~d 249 (345)
....+|||||||+|.++..++++.+ +++++|+ +.+++.++ +++++.+|+.+..+++ |+|++.++|||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 3557899999999999999999877 6899998 78877665 6899999998754433 99999999999988
Q ss_pred hHHHHHHHHHH-hhCCCCCCCcEEEEEeccCCCCCCCCch--hhhhhhc--cchhhhhhcCCCccCCHHHHHHHHHHCCC
Q 044482 250 EQCLKILKNCY-DALPKSRKHGRTQLRSKRGLPESPEFSS--INRNILT--LDIVMYDLFPQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 250 ~~~~~iL~~~~-~aL~p~~~gG~lli~~d~~~~~~~~~~~--~~~~~~~--~d~~~~~~~~~~~~rt~~e~~~ll~~aGf 324 (345)
. ..+|++++ +.|+| ||++++. +........... ....... +.-..... .....++.+++.++|+++||
T Consensus 119 ~--~~~l~~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~Gf 191 (250)
T 2p7i_A 119 P--VALLKRINDDWLAE---GGRLFLV-CPNANAVSRQIAVKMGIISHNSAVTEAEFAH-GHRCTYALDTLERDASRAGL 191 (250)
T ss_dssp H--HHHHHHHHHTTEEE---EEEEEEE-EECTTCHHHHHHHHTTSSSSTTCCCHHHHHT-TCCCCCCHHHHHHHHHHTTC
T ss_pred H--HHHHHHHHHHhcCC---CCEEEEE-cCChHHHHHHHHHHcCccccchhcccccccc-cccccCCHHHHHHHHHHCCC
Confidence 7 48999999 99999 9999998 642211000000 0000000 00000011 13456799999999999999
Q ss_pred CceEEEec
Q 044482 325 GTIKVICR 332 (345)
Q Consensus 325 ~~~~~~~~ 332 (345)
+++++...
T Consensus 192 ~~~~~~~~ 199 (250)
T 2p7i_A 192 QVTYRSGI 199 (250)
T ss_dssp EEEEEEEE
T ss_pred eEEEEeee
Confidence 99887643
No 52
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.62 E-value=1.6e-15 Score=133.75 Aligned_cols=138 Identities=17% Similarity=0.179 Sum_probs=105.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCc-CCCCC--CEEEeccccccCC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWS 248 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~ 248 (345)
...+|||||||+|.++..+++. +.+++++|+ +.+++.++ +++++.+|+.+ +++.+ |+|++.+++||++
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 130 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE 130 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc
Confidence 5579999999999999999988 568999999 77777654 79999999988 66644 9999999999997
Q ss_pred hhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceE
Q 044482 249 DEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIK 328 (345)
Q Consensus 249 d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~ 328 (345)
+. ..+|+++++.|+| ||++++. +........ . .......-.. .....++.+++.++++++||++++
T Consensus 131 ~~--~~~l~~~~~~L~p---gG~l~i~-~~~~~~~~~---~----~~~~~~~~~~-~~~~~~~~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 131 EP--LRALNEIKRVLKS---DGYACIA-ILGPTAKPR---E----NSYPRLYGKD-VVCNTMMPWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp CH--HHHHHHHHHHEEE---EEEEEEE-EECTTCGGG---G----GGGGGGGTCC-CSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred CH--HHHHHHHHHHhCC---CeEEEEE-EcCCcchhh---h----hhhhhhcccc-ccccCCCHHHHHHHHHHcCCEEEE
Confidence 76 4789999999999 9999998 643221110 0 0001000011 123457899999999999999998
Q ss_pred EEec
Q 044482 329 VICR 332 (345)
Q Consensus 329 ~~~~ 332 (345)
+...
T Consensus 197 ~~~~ 200 (242)
T 3l8d_A 197 GIGV 200 (242)
T ss_dssp EEEE
T ss_pred eecc
Confidence 8754
No 53
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.62 E-value=2.3e-15 Score=130.85 Aligned_cols=146 Identities=8% Similarity=0.006 Sum_probs=103.9
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------CceEEeccCCc-CCC
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------CVEHVEGDMFV-NVP 233 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~-~~p 233 (345)
+++.++ .....+|||||||+|.++..+++++|..+++++|+ +.+++.++ +++++.+|+.. +.+
T Consensus 21 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 99 (217)
T 3jwh_A 21 VVAALK-QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKR 99 (217)
T ss_dssp HHHHHH-HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGG
T ss_pred HHHHHH-hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccccc
Confidence 344444 44567999999999999999999999899999999 77777654 48999999865 443
Q ss_pred -CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCC
Q 044482 234 -SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRT 311 (345)
Q Consensus 234 -~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt 311 (345)
.. |+|++.+++||+++++..++|+++++.|+| ||.+++. .... ....... +....+........++
T Consensus 100 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~-~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~ 167 (217)
T 3jwh_A 100 FHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTT-PNIE-------YNVKFAN-LPAGKLRHKDHRFEWT 167 (217)
T ss_dssp GCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEE-EBHH-------HHHHTC------------CCSCBC
T ss_pred CCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEc-cCcc-------cchhhcc-cccccccccccccccC
Confidence 23 999999999999999888999999999999 9976666 3210 0000000 0000000111234568
Q ss_pred HHHHH----HHHHHCCCCceE
Q 044482 312 AGEFK----ALAMAAGFGTIK 328 (345)
Q Consensus 312 ~~e~~----~ll~~aGf~~~~ 328 (345)
.+++. ++++++||++..
T Consensus 168 ~~~l~~~~~~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 168 RSQFQNWANKITERFAYNVQF 188 (217)
T ss_dssp HHHHHHHHHHHHHHSSEEEEE
T ss_pred HHHHHHHHHHHHHHcCceEEE
Confidence 99998 889999997643
No 54
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.62 E-value=2.4e-15 Score=132.62 Aligned_cols=166 Identities=16% Similarity=0.115 Sum_probs=112.9
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-CE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-QA 237 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D~ 237 (345)
.+.+.++ ...+|||||||+|.++..+++. .+++++|+ +.+++.++ +++++.+|+.+ +.+.. |+
T Consensus 26 ~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 99 (243)
T 3d2l_A 26 WVLEQVE---PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDA 99 (243)
T ss_dssp HHHHHSC---TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEE
T ss_pred HHHHHcC---CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCE
Confidence 3444433 3479999999999999999887 68999999 88887665 58999999987 55544 99
Q ss_pred EEecc-ccccC-ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC-------CCCCC-----CCchhhhh--------hhc
Q 044482 238 IFTKS-VLLNW-SDEQCLKILKNCYDALPKSRKHGRTQLRSKRG-------LPESP-----EFSSINRN--------ILT 295 (345)
Q Consensus 238 i~~~~-vlh~~-~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~-------~~~~~-----~~~~~~~~--------~~~ 295 (345)
|++.. ++||+ +.++...+|+++++.|+| ||++++. -.. .+... ......+. ...
T Consensus 100 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (243)
T 3d2l_A 100 ITILCDSLNYLQTEADVKQTFDSAARLLTD---GGKLLFD-VHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVV 175 (243)
T ss_dssp EEECTTGGGGCCSHHHHHHHHHHHHHHEEE---EEEEEEE-EECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEE
T ss_pred EEEeCCchhhcCCHHHHHHHHHHHHHhcCC---CeEEEEE-cCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEE
Confidence 99986 99998 556778999999999999 9988874 211 00000 00000000 000
Q ss_pred cchhhhhhcCCC-----------ccCCHHHHHHHHHHCCCCceEEEecC--------CceEEEEEEcC
Q 044482 296 LDIVMYDLFPQA-----------KGRTAGEFKALAMAAGFGTIKVICRS--------YCYWVIEFYKP 344 (345)
Q Consensus 296 ~d~~~~~~~~~~-----------~~rt~~e~~~ll~~aGf~~~~~~~~~--------~~~~vi~~~k~ 344 (345)
.++.++....++ +.++.++++++|++|||+++++.... +...+++++|+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K~ 243 (243)
T 3d2l_A 176 HELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEKI 243 (243)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEEC
T ss_pred EEEEEEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEeC
Confidence 111111111111 34799999999999999999987541 24568888875
No 55
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.62 E-value=4.1e-15 Score=133.85 Aligned_cols=158 Identities=7% Similarity=0.019 Sum_probs=111.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hh------HhhhCC----------CceEEecc-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PY------VIKNAP----------CVEHVEGD-M 228 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~------~i~~a~----------ri~~~~gd-~ 228 (345)
..+++.++ .....+|||||||+|.++..+++++ |+.+++++|+ +. +++.++ +++++.+| +
T Consensus 33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 35666666 6677899999999999999999996 7789999999 43 665543 68999998 5
Q ss_pred Cc---CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhh
Q 044482 229 FV---NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDL 303 (345)
Q Consensus 229 ~~---~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~ 303 (345)
.. +++.+ |+|++.+++||+++.+ .+++.+++.++| ||++++. +...+......................
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAV---CDHVDVA-EWSMQPTALDQIGHLQAAMIQGLLYAI 185 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTT---CSEEEEE-EECSSCSSGGGHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCC---CCEEEEE-EecCCCCchhhhhHHHHHHHHHHHhhc
Confidence 43 33433 9999999999999885 478888888888 9999999 877654422110000000000000001
Q ss_pred c---CC--CccCCHHHHHHHHHHCCCCceEEEec
Q 044482 304 F---PQ--AKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 304 ~---~~--~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
. .. ...++.+++.++++++||+++++...
T Consensus 186 ~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 186 APSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp SCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 0 01 13579999999999999999887655
No 56
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.62 E-value=6.4e-16 Score=136.42 Aligned_cols=159 Identities=9% Similarity=-0.011 Sum_probs=111.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-CEEEecc-cccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-QAIFTKS-VLLN 246 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D~i~~~~-vlh~ 246 (345)
...+|||||||+|.++..++++ ..+++++|+ +.+++.++ +++++.+|+.+ +.+.. |+|++.. ++||
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 4579999999999999999988 457999999 88887665 58999999987 55544 9999998 9999
Q ss_pred CCh-hHHHHHHHHHHhhCCCCCCCcEEEEEeccCC-------CCCC-----CCchhhhh------hhccchhhhhhcCCC
Q 044482 247 WSD-EQCLKILKNCYDALPKSRKHGRTQLRSKRGL-------PESP-----EFSSINRN------ILTLDIVMYDLFPQA 307 (345)
Q Consensus 247 ~~d-~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~-------~~~~-----~~~~~~~~------~~~~d~~~~~~~~~~ 307 (345)
+++ ++...+|+++++.|+| ||++++. -... +... ......+. ....++.++... ++
T Consensus 115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 189 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKE---GGVFIFD-INSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRD-GE 189 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEE---EEEEEEE-EECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEEC-SS
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEEE-ecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEec-CC
Confidence 954 6778999999999999 9988874 2210 0000 00000000 000011111111 11
Q ss_pred -----------ccCCHHHHHHHHHHCCCCceEEEec--------CCceEEEEEEcC
Q 044482 308 -----------KGRTAGEFKALAMAAGFGTIKVICR--------SYCYWVIEFYKP 344 (345)
Q Consensus 308 -----------~~rt~~e~~~ll~~aGf~~~~~~~~--------~~~~~vi~~~k~ 344 (345)
..++.++|+++|+++||+++++... .....+++++|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~ 245 (246)
T 1y8c_A 190 FYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG 245 (246)
T ss_dssp SEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred cccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence 3469999999999999999998654 224568888886
No 57
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.62 E-value=9.8e-16 Score=132.18 Aligned_cols=138 Identities=9% Similarity=0.066 Sum_probs=104.3
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------------------CceEEecc
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------------------CVEHVEGD 227 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------------------ri~~~~gd 227 (345)
+++.+. .....+|||+|||+|..+..++++ +.+++++|+ +.+++.|+ +++++.+|
T Consensus 14 ~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 90 (203)
T 1pjz_A 14 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 90 (203)
T ss_dssp HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECc
Confidence 344444 556689999999999999999987 468999999 78877553 47899999
Q ss_pred CCc-CCCC--C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhh
Q 044482 228 MFV-NVPS--G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDL 303 (345)
Q Consensus 228 ~~~-~~p~--~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~ 303 (345)
+++ +.+. . |+|+++.++|++++++..+++++++++|+| ||+++++ ....+... .
T Consensus 91 ~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~-~~~~~~~~------------------~ 148 (203)
T 1pjz_A 91 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLI-TLEYDQAL------------------L 148 (203)
T ss_dssp CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEE-EESSCSSS------------------S
T ss_pred cccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEE-EEecCccc------------------c
Confidence 988 4442 3 999999999999988888899999999999 9995555 32222110 0
Q ss_pred cCCCccCCHHHHHHHHHHCCCCceEEEecC
Q 044482 304 FPQAKGRTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 304 ~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
.......+.+++++++++ ||+++.+....
T Consensus 149 ~~~~~~~~~~el~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 149 EGPPFSVPQTWLHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp SSCCCCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred CCCCCCCCHHHHHHHhcC-CcEEEEecccc
Confidence 001122578999999999 99988776553
No 58
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.62 E-value=1.4e-15 Score=134.11 Aligned_cols=156 Identities=13% Similarity=0.047 Sum_probs=107.8
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCc-CCCCC--CEE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFV-NVPSG--QAI 238 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~-~~p~~--D~i 238 (345)
.+.+.++ .....+|||||||+|.++..++++.+ .+++++|+ +.+++.++ +++++.+|+.+ +++.+ |+|
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 4555555 45667999999999999999998743 38999999 78877665 58999999987 65543 999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC--CCCCCchh----h----hhhhcc-----chhhhhh
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP--ESPEFSSI----N----RNILTL-----DIVMYDL 303 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~--~~~~~~~~----~----~~~~~~-----d~~~~~~ 303 (345)
++.+++|++++. ..+|+++++.|+| ||++++. +.... ........ . .....+ ....+..
T Consensus 112 ~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (243)
T 3bkw_A 112 YSSLALHYVEDV--ARLFRTVHQALSP---GGHFVFS-TEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAK 185 (243)
T ss_dssp EEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEE-EECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHH
T ss_pred EEeccccccchH--HHHHHHHHHhcCc---CcEEEEE-eCCcccccCcCcceeecCCCceEEeecccccccceeeeeccC
Confidence 999999999865 5899999999999 9999987 53210 00000000 0 000000 0000100
Q ss_pred cCCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 304 FPQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 304 ~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
......+|.++|.++|+++||+++++...
T Consensus 186 ~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 186 GVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp SCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred ceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 00123468999999999999999988754
No 59
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.61 E-value=2e-15 Score=134.27 Aligned_cols=156 Identities=13% Similarity=0.064 Sum_probs=109.0
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCc-CCCCC--CE
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFV-NVPSG--QA 237 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~-~~p~~--D~ 237 (345)
..+.+.++ .....+|||||||+|.++..+++..+. +++++|+ +.+++.++ +++++.+|+.+ +++.+ |+
T Consensus 34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 34556555 446689999999999999999998765 8999999 88887665 78999999987 66644 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC------------CCCCCchhhhhhhccc-----hhh
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP------------ESPEFSSINRNILTLD-----IVM 300 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~------------~~~~~~~~~~~~~~~d-----~~~ 300 (345)
|++.+++|++++. .++|+++++.|+| ||++++. ..... .........+ ...++ ...
T Consensus 112 v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 184 (253)
T 3g5l_A 112 VLSSLALHYIASF--DDICKKVYINLKS---SGSFIFS-VEHPVFTADGRQDWYTDETGNKLHWPV-DRYFNESMRTSHF 184 (253)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEE-EECHHHHSSSSCSCEECSSCCEEEEEE-CCTTCCCEEEEEE
T ss_pred EEEchhhhhhhhH--HHHHHHHHHHcCC---CcEEEEE-eCCCccccCccccceeccCCceEEEEe-ccccccceEEEee
Confidence 9999999999765 5899999999999 9999886 33210 0000000000 00000 000
Q ss_pred hhhcCCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 301 YDLFPQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 301 ~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
.........+|.++|.++|+++||+++++...
T Consensus 185 ~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 185 LGEDVQKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp TTEEEEEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred ccccCccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 00000112359999999999999999998744
No 60
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.61 E-value=5.8e-15 Score=125.31 Aligned_cols=129 Identities=19% Similarity=0.240 Sum_probs=105.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC--CEEEe
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG--QAIFT 240 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~--D~i~~ 240 (345)
.+++.+ .....+|||||||+|.++..+++. +.+++++|. +.+++.++ +++++.+|+.+ +++.+ |+|++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 344444 245679999999999999999987 568999999 77877766 79999999988 66643 99999
Q ss_pred c-cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHH
Q 044482 241 K-SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALA 319 (345)
Q Consensus 241 ~-~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll 319 (345)
. .++|++++++...+|+++++.|+| ||++++. ... ...++.+++.+++
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~---~G~l~~~-~~~---------------------------~~~~~~~~~~~~l 162 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGA---DGRAVIG-FGA---------------------------GRGWVFGDFLEVA 162 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-EET---------------------------TSSCCHHHHHHHH
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCC---CCEEEEE-eCC---------------------------CCCcCHHHHHHHH
Confidence 8 899999988889999999999999 9999887 321 1125688999999
Q ss_pred HHCCCCceEEEec
Q 044482 320 MAAGFGTIKVICR 332 (345)
Q Consensus 320 ~~aGf~~~~~~~~ 332 (345)
+++||+++++...
T Consensus 163 ~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 163 ERVGLELENAFES 175 (195)
T ss_dssp HHHTEEEEEEESS
T ss_pred HHcCCEEeeeecc
Confidence 9999999887544
No 61
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.61 E-value=2.4e-15 Score=131.71 Aligned_cols=146 Identities=14% Similarity=0.068 Sum_probs=106.4
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------CceEEeccCCc-CCCCC--CEEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------CVEHVEGDMFV-NVPSG--QAIF 239 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~-~~p~~--D~i~ 239 (345)
....+|||||||+|.++..++++ +.+++++|+ +.+++.++ +++++.+|+.+ +++.+ |+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 35679999999999999999988 568999999 77776554 36899999987 66543 9999
Q ss_pred eccccccCChh-HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhc--------C-----
Q 044482 240 TKSVLLNWSDE-QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLF--------P----- 305 (345)
Q Consensus 240 ~~~vlh~~~d~-~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~--------~----- 305 (345)
+..++|++++. ...++|+++++.|+| ||++++. +........ .. ......++...... .
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLV-EFGQNWHLK--LY-RKRYLHDFPITKEEGSFLARDPETGETE 179 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEE-EEBCCTTSH--HH-HHHHHHHHHHHCSTTEEEEECTTTCCEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEE-ECCcchhHH--HH-HHHhhhhccchhhhcceEecccccCCcc
Confidence 99999999765 466899999999999 9999999 765432211 00 00000011000000 0
Q ss_pred -CCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 306 -QAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 306 -~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
....++.++|+++|+++||+++++...
T Consensus 180 ~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 180 FIAHHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp EEEECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eeeEeCCHHHHHHHHHHcCCEEEEEEec
Confidence 013579999999999999999988644
No 62
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.61 E-value=6.3e-15 Score=131.98 Aligned_cols=149 Identities=10% Similarity=0.065 Sum_probs=110.1
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---CceEEeccCCc-CCCCC--CEEE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---CVEHVEGDMFV-NVPSG--QAIF 239 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---ri~~~~gd~~~-~~p~~--D~i~ 239 (345)
...+++.++ .....+|||||||+|.++..+++ |+.+++++|+ |.+++.++ +++++.+|+.+ +++++ |+|+
T Consensus 23 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 23 VNAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 345566665 56778999999999999999997 6789999999 88888877 79999999987 66643 9999
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHH
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALA 319 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll 319 (345)
+.+++||+++. ..+|+++++.|+ ||++++. +...+..... +....+.. ..... ....++.+++. +|
T Consensus 100 ~~~~l~~~~~~--~~~l~~~~~~Lk----gG~~~~~-~~~~~~~~~~----~~~~~~~~-~~~~~-~~~~~~~~~~~-~l 165 (261)
T 3ege_A 100 SILAIHHFSHL--EKSFQEMQRIIR----DGTIVLL-TFDIRLAQRI----WLYDYFPF-LWEDA-LRFLPLDEQIN-LL 165 (261)
T ss_dssp EESCGGGCSSH--HHHHHHHHHHBC----SSCEEEE-EECGGGCCCC----GGGGTCHH-HHHHH-HTSCCHHHHHH-HH
T ss_pred EcchHhhccCH--HHHHHHHHHHhC----CcEEEEE-EcCCchhHHH----HHHHHHHH-Hhhhh-hhhCCCHHHHH-HH
Confidence 99999999776 588999999998 4788888 6533221111 11111110 11111 23445678899 99
Q ss_pred HHCCCCceEEEec
Q 044482 320 MAAGFGTIKVICR 332 (345)
Q Consensus 320 ~~aGf~~~~~~~~ 332 (345)
+++||+++++...
T Consensus 166 ~~aGF~~v~~~~~ 178 (261)
T 3ege_A 166 QENTKRRVEAIPF 178 (261)
T ss_dssp HHHHCSEEEEEEC
T ss_pred HHcCCCceeEEEe
Confidence 9999999988765
No 63
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.60 E-value=3.9e-15 Score=127.09 Aligned_cols=139 Identities=14% Similarity=0.075 Sum_probs=107.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG-Q 236 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~-D 236 (345)
.+++.++ .....+|||||||+|.++..+++. +.+++++|+ +.+++.++ +++++.+|+.+ +.+.. |
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 3445555 445679999999999999999987 568999999 77777654 68899999987 44334 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHH
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~ 316 (345)
+|++..++|++++++...+|+++++.|+| ||+++++ +....+....+ . .....++.++++
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~---gG~l~~~-~~~~~~~~~~~---------------~-~~~~~~~~~~l~ 159 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIV-AAMDTADYPCT---------------V-GFPFAFKEGELR 159 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEE---EEEEEEE-EEBCCSSSCCC---------------S-CCSCCBCTTHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEE-EeeccCCcCCC---------------C-CCCCccCHHHHH
Confidence 99999999999988888999999999999 9999988 66544331110 0 022346789999
Q ss_pred HHHHHCCCCceEEEec
Q 044482 317 ALAMAAGFGTIKVICR 332 (345)
Q Consensus 317 ~ll~~aGf~~~~~~~~ 332 (345)
+++++ |++++....
T Consensus 160 ~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 160 RYYEG--WERVKYNED 173 (199)
T ss_dssp HHTTT--SEEEEEECC
T ss_pred HHhcC--CeEEEeccc
Confidence 99987 988877543
No 64
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.60 E-value=1.9e-15 Score=131.90 Aligned_cols=152 Identities=17% Similarity=0.129 Sum_probs=107.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCc---CCCCC--CEEE
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFV---NVPSG--QAIF 239 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~---~~p~~--D~i~ 239 (345)
..+++.++ ....+|||||||+|.++..+++. + .+++++|+ +.+++.++ ..+++.+|+.+ +++++ |+|+
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~ 98 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVI 98 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEE
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEE
Confidence 44555554 45579999999999999999988 4 79999999 78888776 35788899875 33433 9999
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhh-hhhccc---hhhhhhcCCCccCCHHHH
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINR-NILTLD---IVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~-~~~~~d---~~~~~~~~~~~~rt~~e~ 315 (345)
+.+++||+++. ..+|+++++.|+| ||++++. ....... ..... ...... ....... ....++.++|
T Consensus 99 ~~~~l~~~~~~--~~~l~~~~~~L~~---gG~l~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 168 (230)
T 3cc8_A 99 FGDVLEHLFDP--WAVIEKVKPYIKQ---NGVILAS-IPNVSHI---SVLAPLLAGNWTYTEYGLLDKT-HIRFFTFNEM 168 (230)
T ss_dssp EESCGGGSSCH--HHHHHHTGGGEEE---EEEEEEE-EECTTSH---HHHHHHHTTCCCCBSSSTTBTT-CCCCCCHHHH
T ss_pred ECChhhhcCCH--HHHHHHHHHHcCC---CCEEEEE-eCCcchH---HHHHHHhcCCceeccCCCCCcc-eEEEecHHHH
Confidence 99999999887 4899999999999 9999988 5432110 00000 000000 0000000 2245799999
Q ss_pred HHHHHHCCCCceEEEecC
Q 044482 316 KALAMAAGFGTIKVICRS 333 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~~ 333 (345)
.++++++||+++++....
T Consensus 169 ~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 169 LRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHcCCeEEEEEecc
Confidence 999999999999887653
No 65
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.60 E-value=3.4e-15 Score=141.30 Aligned_cols=140 Identities=16% Similarity=0.209 Sum_probs=108.1
Q ss_pred cccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC-----------------CceEEeccCCc-------CC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP-----------------CVEHVEGDMFV-------NV 232 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~-----------------ri~~~~gd~~~-------~~ 232 (345)
...+|||||||+|.++..+++.+ |+.+++++|+ +.+++.++ +++++.+|+.+ ++
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 45789999999999999999987 7889999999 77765432 68899999987 45
Q ss_pred CCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccC
Q 044482 233 PSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGR 310 (345)
Q Consensus 233 p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r 310 (345)
+++ |+|++..++|++++. ..+|++++++|+| ||++++. +.......... ...+....... .+..+
T Consensus 163 ~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~-~~~~~~~~~~~------~~~~~~~~~~~-~~~~~ 229 (383)
T 4fsd_A 163 PDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRD---GGELYFS-DVYADRRLSEA------AQQDPILYGEC-LGGAL 229 (383)
T ss_dssp CTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEE-EEEESSCCCHH------HHHCHHHHHTT-CTTCC
T ss_pred CCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCC---CCEEEEE-EeccccccCHh------HhhhHHHhhcc-cccCC
Confidence 543 999999999999886 5899999999999 9999998 76654332111 11111122222 45667
Q ss_pred CHHHHHHHHHHCCCCceEEEe
Q 044482 311 TAGEFKALAMAAGFGTIKVIC 331 (345)
Q Consensus 311 t~~e~~~ll~~aGf~~~~~~~ 331 (345)
+.++|.++|+++||+++++..
T Consensus 230 ~~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 230 YLEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp BHHHHHHHHHHTTCCCEEEEE
T ss_pred CHHHHHHHHHHCCCceEEEEe
Confidence 899999999999999887654
No 66
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.59 E-value=6.1e-15 Score=128.37 Aligned_cols=163 Identities=13% Similarity=0.013 Sum_probs=112.3
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---CceEEeccCCcC----CC-CC--CE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---CVEHVEGDMFVN----VP-SG--QA 237 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---ri~~~~gd~~~~----~p-~~--D~ 237 (345)
.+++.+. .....+|||||||+|.++..++++ +.+++++|+ +.+++.++ ++++..+|+.+. .+ .. |+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 4555555 445589999999999999999988 568999999 88888776 688888887652 12 22 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhc-----CCCccCCH
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLF-----PQAKGRTA 312 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~~~rt~ 312 (345)
|++.+++| +.+. ..+|+++++.|+| ||++++. +............ ............ .....+|.
T Consensus 120 v~~~~~l~-~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (227)
T 3e8s_A 120 ICANFALL-HQDI--IELLSAMRTLLVP---GGALVIQ-TLHPWSVADGDYQ---DGWREESFAGFAGDWQPMPWYFRTL 189 (227)
T ss_dssp EEEESCCC-SSCC--HHHHHHHHHTEEE---EEEEEEE-ECCTTTTCTTCCS---CEEEEECCTTSSSCCCCEEEEECCH
T ss_pred EEECchhh-hhhH--HHHHHHHHHHhCC---CeEEEEE-ecCccccCccccc---cccchhhhhccccCcccceEEEecH
Confidence 99999999 5555 4899999999999 9999998 6644332211100 000000000000 01134699
Q ss_pred HHHHHHHHHCCCCceEEEecC--C----ceEEEEEEcC
Q 044482 313 GEFKALAMAAGFGTIKVICRS--Y----CYWVIEFYKP 344 (345)
Q Consensus 313 ~e~~~ll~~aGf~~~~~~~~~--~----~~~vi~~~k~ 344 (345)
++|.++|+++||+++++.... . ...++.++|+
T Consensus 190 ~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 190 ASWLNALDMAGLRLVSLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp HHHHHHHHHTTEEEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred HHHHHHHHHcCCeEEEEecCCCCCCCCceeEEEEeecC
Confidence 999999999999999987532 1 2456666664
No 67
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.59 E-value=2.9e-15 Score=133.53 Aligned_cols=147 Identities=12% Similarity=0.102 Sum_probs=107.9
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC--CEEEe
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG--QAIFT 240 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~--D~i~~ 240 (345)
.+++.++ .....+|||||||+|.++..+++++|..+++++|+ +.+++.++ +++++.+|+.+ + +.+ |+|++
T Consensus 24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYA 101 (259)
T ss_dssp HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEE
T ss_pred HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEE
Confidence 5666666 56678999999999999999999999999999999 88888775 79999999987 5 543 99999
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccch--hhhhh----cCCCccCCHHH
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDI--VMYDL----FPQAKGRTAGE 314 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~--~~~~~----~~~~~~rt~~e 314 (345)
.+++|++++. ..+|+++++.|+| ||++++. +.... ..+........... ..-.. ......++.++
T Consensus 102 ~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T 2p35_A 102 NAVFQWVPDH--LAVLSQLMDQLES---GGVLAVQ-MPDNL---QEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSD 172 (259)
T ss_dssp ESCGGGSTTH--HHHHHHHGGGEEE---EEEEEEE-EECCT---TSHHHHHHHHHHHHSTTGGGC-------CCCCCHHH
T ss_pred eCchhhCCCH--HHHHHHHHHhcCC---CeEEEEE-eCCCC---CcHHHHHHHHHhcCcchHHHhccccccccCCCCHHH
Confidence 9999999765 5789999999999 9999998 64221 11100000000000 00000 00234578999
Q ss_pred HHHHHHHCCCCc
Q 044482 315 FKALAMAAGFGT 326 (345)
Q Consensus 315 ~~~ll~~aGf~~ 326 (345)
|.++|+++||++
T Consensus 173 ~~~~l~~aGf~v 184 (259)
T 2p35_A 173 YFNALSPKSSRV 184 (259)
T ss_dssp HHHHHGGGEEEE
T ss_pred HHHHHHhcCCce
Confidence 999999999964
No 68
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.59 E-value=7.3e-16 Score=145.36 Aligned_cols=235 Identities=9% Similarity=-0.075 Sum_probs=142.8
Q ss_pred CCc--hhhhhhcCHHHHHHHHHHHHHhhhhcc--------ccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccc
Q 044482 6 GLH--LFDYASKDARLQNLFNQSMHNHTAIGF--------EELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIEN 75 (345)
Q Consensus 6 g~~--~~~~~~~~~~~~~~f~~~~~l~~a~~l--------~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~r 75 (345)
|++ +=+++.+++.+.... .+++-..++ + ++..| . + +.|.+|||+++++ ++..+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~-ll~~L-~--~-~~t~~eLa~~~g~-------~~~~v~~ 74 (373)
T 2qm3_A 10 GVDLGTENLYFQSNAMKEIV---ERVKTKTKIPVYERSVEN-VLSAV-L--A-SDDIWRIVDLSEE-------PLPLVVA 74 (373)
T ss_dssp -------CTTTSCCHHHHHH---HHHHTTCSSCCCHHHHHH-HHHHH-H--H-CSCHHHHHHHHTS-------CHHHHHH
T ss_pred ccccCcccchhhhhHHHHHH---HHHHHhcCccHhHHHHHH-HHHHh-c--C-CCCHHHHHHHhCC-------ChHHHHH
Confidence 554 334455555554433 334455666 7 88888 4 2 5899999999999 7899999
Q ss_pred cCCCCccCceeeEEeEeeecCCCccc-cccchhhhhhhhhc-cccc-hhhhhchHHHHHHHh---HhcCcchhhhhcc-C
Q 044482 76 ASSSPVSRNISTIDVVMYNLFPGAKE-RTMEEFNALAIGAG-FGTI-KVICRAYCYWVIEFY---KTMHIMDCIYLTM-L 148 (345)
Q Consensus 76 lL~~L~~~gl~~~~~~~y~~t~~s~~-l~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~~~~~---~~~g~~~~~~~~~-~ 148 (345)
+|+.|++.|+++..++ |++|+.+.. +...++.+..+.+. .+.. ...+..|.....++. ..+...... +.+ .
T Consensus 75 ~L~~l~~~gll~~~~~-~~lt~~~~~~l~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~ 152 (373)
T 2qm3_A 75 ILESLNELGYVTFEDG-VKLTEKGEELVAEYGIGKRYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPLHE-FDQAY 152 (373)
T ss_dssp HHHHHHHTTSEECSSS-SEECHHHHHHHHHHTCCCCCC------------CGGGHHHHHHHHHHHTTCCCCCGG-GTCCC
T ss_pred HHHHHhhCCcEEECCC-EEECHHHHHHHHhcCccccccccchhhcCCCcchhhhHHHHHHHHHHHhcCCccchh-cCCee
Confidence 9999999999987654 999998766 44322211111110 0000 111222221111111 111111111 111 1
Q ss_pred chhHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------
Q 044482 149 PMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------- 219 (345)
Q Consensus 149 ~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------- 219 (345)
+.........+ ..... . .....+||||| |+|.++..+++..|+.+++++|+ |.+++.++
T Consensus 153 ~~~~~~~~~~l---------~~~~~-~-~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~ 220 (373)
T 2qm3_A 153 VTPETTVARVI---------LMHTR-G-DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY 220 (373)
T ss_dssp BCHHHHHHHHH---------HHHHT-T-CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHH---------HHhhc-C-CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 11001111100 01111 1 12357999999 99999999999999889999999 88888766
Q ss_pred -CceEEeccCCcCCCC----C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 -CVEHVEGDMFVNVPS----G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 -ri~~~~gd~~~~~p~----~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+++++.+|+.+++|. . |+|++...+|... ...+|++++++|+| ||++++.
T Consensus 221 ~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~~---~~~~l~~~~~~Lkp---gG~~~~~ 276 (373)
T 2qm3_A 221 EDIEIFTFDLRKPLPDYALHKFDTFITDPPETLEA---IRAFVGRGIATLKG---PRCAGYF 276 (373)
T ss_dssp CCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHHH---HHHHHHHHHHTBCS---TTCEEEE
T ss_pred CCEEEEEChhhhhchhhccCCccEEEECCCCchHH---HHHHHHHHHHHccc---CCeEEEE
Confidence 589999999885552 3 9999988776542 47899999999999 9977666
No 69
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.58 E-value=6.5e-15 Score=133.07 Aligned_cols=151 Identities=14% Similarity=0.083 Sum_probs=110.2
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC-CEEEe
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG-QAIFT 240 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~-D~i~~ 240 (345)
..+++.++ .....+|||||||+|.++..+++ |..+++++|+ +.+++.++ +++++.+|+.+ +++.. |+|++
T Consensus 47 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 123 (279)
T 3ccf_A 47 EDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFS 123 (279)
T ss_dssp CHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEE
Confidence 34555555 55668999999999999999998 7889999999 88888776 79999999987 54444 99999
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhh-h-----hhcCCCccCCHHH
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVM-Y-----DLFPQAKGRTAGE 314 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~-~-----~~~~~~~~rt~~e 314 (345)
.+++|++++. ..+|++++++|+| ||++++. ....... ... ......... . ........++.++
T Consensus 124 ~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (279)
T 3ccf_A 124 NAMLHWVKEP--EAAIASIHQALKS---GGRFVAE-FGGKGNI--KYI---LEALYNALETLGIHNPQALNPWYFPSIGE 192 (279)
T ss_dssp ESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEE-EECTTTT--HHH---HHHHHHHHHHHTCCCGGGGCCCCCCCHHH
T ss_pred cchhhhCcCH--HHHHHHHHHhcCC---CcEEEEE-ecCCcch--HHH---HHHHHHHHHhcCCccccCcCceeCCCHHH
Confidence 9999999876 4789999999999 9999987 5432211 000 001100000 0 0000123568999
Q ss_pred HHHHHHHCCCCceEEEec
Q 044482 315 FKALAMAAGFGTIKVICR 332 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~ 332 (345)
|.++|+++||+++++...
T Consensus 193 ~~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 193 YVNILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEEEe
Confidence 999999999999877654
No 70
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.57 E-value=7.4e-15 Score=133.06 Aligned_cols=153 Identities=14% Similarity=0.059 Sum_probs=108.8
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-C-CCC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-N-VPS 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~-~p~ 234 (345)
..+++.++ . ...+|||||||+|.++..+++. +.+++++|+ +.+++.++ +++++.+|+.+ + ++.
T Consensus 59 ~~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 59 DRVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 34555555 2 3579999999999999999988 568999999 78877665 58899999987 3 444
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhh-------hcC
Q 044482 235 G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYD-------LFP 305 (345)
Q Consensus 235 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~ 305 (345)
+ |+|++.+++||+++. ..+|+++++.|+| ||++++. +....... .........+..... ...
T Consensus 135 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADP--RSVLQTLWSVLRP---GGVLSLM-FYNAHGLL---MHNMVAGNFDYVQAGMPKKKKRTLS 205 (285)
T ss_dssp SCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE---EEEEEEE-EEBHHHHH---HHHHHTTCHHHHHTTCCCC----CC
T ss_pred CCceEEEECchhhcccCH--HHHHHHHHHHcCC---CeEEEEE-EeCCchHH---HHHHHhcCHHHHhhhccccccccCC
Confidence 3 999999999999877 5799999999999 9999998 54321100 000000000000000 000
Q ss_pred CCccCCHHHHHHHHHHCCCCceEEEecC
Q 044482 306 QAKGRTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 306 ~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
....++.+++.++|+++||+++++..+.
T Consensus 206 ~~~~~~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 206 PDYPRDPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp CSCCBCHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCCCCCHHHHHHHHHHCCCceeeeeeEE
Confidence 2345789999999999999999887653
No 71
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.57 E-value=2.2e-14 Score=124.88 Aligned_cols=135 Identities=16% Similarity=0.048 Sum_probs=100.8
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCc-CCCCC--CEEEeccccccCChhHHH
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCL 253 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~ 253 (345)
..+|||||||+|.++..++++ +++|. +.+++.++ +++++.+|+.+ +++.+ |+|++.+++|++++. .
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~ 119 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP--E 119 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--H
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--H
Confidence 579999999999999988765 89998 88888777 79999999887 66543 999999999999876 4
Q ss_pred HHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 254 KILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 254 ~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
.+|+++++.|+| ||++++. +.... ......... .. ...........++.++|.++|+++||+++++...
T Consensus 120 ~~l~~~~~~L~p---gG~l~i~-~~~~~----~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 120 RALKEAYRILKK---GGYLIVG-IVDRE----SFLGREYEK-NK-EKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHEEE---EEEEEEE-EECSS----SHHHHHHHH-TT-TC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHcCC---CcEEEEE-EeCCc----cHHHHHHHH-Hh-cCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 899999999999 9999998 64321 111000000 00 0000111234579999999999999999888655
No 72
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.55 E-value=1.5e-14 Score=129.06 Aligned_cols=144 Identities=12% Similarity=0.043 Sum_probs=101.3
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC--CEEEecccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG--QAIFTKSVL 244 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~--D~i~~~~vl 244 (345)
.....+|||||||+|.++..++++ ..+++++|+ +.+++.++ +++++.+|+.+ +++++ |+|++.+++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 556689999999999999999987 468999999 77776543 79999999987 66644 999999999
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcC---CCccCCHHHHHHHHHH
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFP---QAKGRTAGEFKALAMA 321 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~rt~~e~~~ll~~ 321 (345)
|++++. ..+|+++++.|+| ||++++. -. .....+..........+......+ ....++.+++.++|++
T Consensus 115 ~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLKP---GGALLEG-WD---QAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRR 185 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEEE---EEEEEEE-EE---EECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHH
T ss_pred hhcCCH--HHHHHHHHHHCCC---CcEEEEE-ec---CCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHH
Confidence 999875 5789999999999 9988776 11 111111000011111111000000 1134678899999999
Q ss_pred CCCCceEEEe
Q 044482 322 AGFGTIKVIC 331 (345)
Q Consensus 322 aGf~~~~~~~ 331 (345)
+||+++.+..
T Consensus 186 ~Gf~~~~~~~ 195 (263)
T 2yqz_A 186 LGLKPRTREV 195 (263)
T ss_dssp TTCCCEEEEE
T ss_pred cCCCcceEEE
Confidence 9999876643
No 73
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.55 E-value=5e-15 Score=134.95 Aligned_cols=154 Identities=15% Similarity=0.225 Sum_probs=106.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------------------------------
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------------------------------- 219 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------------------------------- 219 (345)
...+|||||||+|.++..+++++|..+++++|+ +.+++.|+
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 567999999999999999999999999999999 77776543
Q ss_pred -----------------------------CceEEeccCCcCC------CC-C-CEEEeccccccC----ChhHHHHHHHH
Q 044482 220 -----------------------------CVEHVEGDMFVNV------PS-G-QAIFTKSVLLNW----SDEQCLKILKN 258 (345)
Q Consensus 220 -----------------------------ri~~~~gd~~~~~------p~-~-D~i~~~~vlh~~----~d~~~~~iL~~ 258 (345)
+++|+.+|+.... +. . |+|++..+++++ +++...++|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 4889999998632 33 3 999999999665 77788999999
Q ss_pred HHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH--CCCCceEEEecC---
Q 044482 259 CYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA--AGFGTIKVICRS--- 333 (345)
Q Consensus 259 ~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~--aGf~~~~~~~~~--- 333 (345)
+++.|+| ||+|++. ..-... . ......... ..... .......+++.++|.+ +||+.+++....
T Consensus 206 ~~~~Lkp---GG~lil~-~~~~~~-----y-~~~~~~~~~-~~~~~-~~~~~~p~~~~~~L~~~~~GF~~~~~~~~~~~~ 273 (292)
T 3g07_A 206 IYRHLRP---GGILVLE-PQPWSS-----Y-GKRKTLTET-IYKNY-YRIQLKPEQFSSYLTSPDVGFSSYELVATPHNT 273 (292)
T ss_dssp HHHHEEE---EEEEEEE-CCCHHH-----H-HTTTTSCHH-HHHHH-HHCCCCGGGHHHHHTSTTTCCCEEEEC------
T ss_pred HHHHhCC---CcEEEEe-cCCchh-----h-hhhhcccHH-HHhhh-hcEEEcHHHHHHHHHhcCCCceEEEEeccCCCC
Confidence 9999999 9988887 321110 0 000000000 00011 1223447899999999 999988876542
Q ss_pred ---CceEEEEEEcC
Q 044482 334 ---YCYWVIEFYKP 344 (345)
Q Consensus 334 ---~~~~vi~~~k~ 344 (345)
....+...+|+
T Consensus 274 ~~g~~r~i~~~~k~ 287 (292)
T 3g07_A 274 SKGFQRPVYLFHKA 287 (292)
T ss_dssp -----CCCEEEECC
T ss_pred CCCccceEEEEEcC
Confidence 12345555553
No 74
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.54 E-value=2.3e-14 Score=124.19 Aligned_cols=132 Identities=14% Similarity=0.056 Sum_probs=102.9
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCCCceEEeccCCc-CCCCC--CEEEeccccc
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAPCVEHVEGDMFV-NVPSG--QAIFTKSVLL 245 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~ri~~~~gd~~~-~~p~~--D~i~~~~vlh 245 (345)
.+++.+.......+|||||||+|.++..++ .+++++|+.+. +++++.+|+.+ +++.+ |+|++.+++|
T Consensus 57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~-----~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 126 (215)
T 2zfu_A 57 RIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL-----DPRVTVCDMAQVPLEDESVDVAVFCLSLM 126 (215)
T ss_dssp HHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS-----STTEEESCTTSCSCCTTCEEEEEEESCCC
T ss_pred HHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC-----CceEEEeccccCCCCCCCEeEEEEehhcc
Confidence 344444323456799999999999998873 57999998433 68899999988 66644 9999999998
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCC
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~ 325 (345)
+.+ ...+|+++++.|+| ||++++. +.... ..+.++|.++++++||+
T Consensus 127 -~~~--~~~~l~~~~~~L~~---gG~l~i~-~~~~~---------------------------~~~~~~~~~~l~~~Gf~ 172 (215)
T 2zfu_A 127 -GTN--IRDFLEEANRVLKP---GGLLKVA-EVSSR---------------------------FEDVRTFLRAVTKLGFK 172 (215)
T ss_dssp -SSC--HHHHHHHHHHHEEE---EEEEEEE-ECGGG---------------------------CSCHHHHHHHHHHTTEE
T ss_pred -ccC--HHHHHHHHHHhCCC---CeEEEEE-EcCCC---------------------------CCCHHHHHHHHHHCCCE
Confidence 444 36899999999999 9999998 53210 01689999999999999
Q ss_pred ceEEEecCCceEEEEEEcC
Q 044482 326 TIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 326 ~~~~~~~~~~~~vi~~~k~ 344 (345)
+++.....+...++.++|+
T Consensus 173 ~~~~~~~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 173 IVSKDLTNSHFFLFDFQKT 191 (215)
T ss_dssp EEEEECCSTTCEEEEEEEC
T ss_pred EEEEecCCCeEEEEEEEec
Confidence 9887766667788888875
No 75
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.54 E-value=1.7e-14 Score=127.66 Aligned_cols=145 Identities=16% Similarity=0.120 Sum_probs=106.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCc-CCCC-------CCEEEec
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFV-NVPS-------GQAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~-~~p~-------~D~i~~~ 241 (345)
.....+|||||||+|.++..+++..+ +++++|+ +.+++.++ +++++.+|+.+ +.+. .|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 34567899999999999999999988 7999998 78887665 79999999987 3321 3899999
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhh-----hccchhhhhhc-CCCccCCHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNI-----LTLDIVMYDLF-PQAKGRTAGEF 315 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~-----~~~d~~~~~~~-~~~~~rt~~e~ 315 (345)
.++|++++++...+|++++++|+| ||+++|. +...++.. ...... ....+...... .....++.+++
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLI-ELGTGCID---FFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDI 204 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEE-EECTTHHH---HHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHH
T ss_pred chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEE-eCCccccH---HHHHHHhCCCCCchhhhhccccCCCCCccCHHHH
Confidence 999999988888999999999999 9999999 77543210 000000 00000000000 01234689999
Q ss_pred HHHHHHCCCCceEEEec
Q 044482 316 KALAMAAGFGTIKVICR 332 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~ 332 (345)
.+++ +||+++.....
T Consensus 205 ~~~~--aGf~~~~~~~~ 219 (245)
T 3ggd_A 205 ELYF--PDFEILSQGEG 219 (245)
T ss_dssp HHHC--TTEEEEEEECC
T ss_pred HHHh--CCCEEEecccc
Confidence 9999 99999876544
No 76
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.53 E-value=2.2e-13 Score=120.85 Aligned_cols=101 Identities=18% Similarity=0.276 Sum_probs=82.2
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-CE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-QA 237 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D~ 237 (345)
.+++... .....+|||||||+|.++..++++ +.+++++|+ +.+++.++ +++++.+|+.+ +.+.. |+
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 108 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA 108 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccE
Confidence 4444443 345579999999999999999986 568999999 88887665 58999999988 55544 99
Q ss_pred EEec-cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTK-SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~-~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|++. ..+|+++.++..++|+++++.|+| ||.+++.
T Consensus 109 v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~li~~ 144 (252)
T 1wzn_A 109 VTMFFSTIMYFDEEDLRKLFSKVAEALKP---GGVFITD 144 (252)
T ss_dssp EEECSSGGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred EEEcCCchhcCCHHHHHHHHHHHHHHcCC---CeEEEEe
Confidence 9986 567788888889999999999999 9988764
No 77
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.52 E-value=4e-14 Score=128.88 Aligned_cols=136 Identities=13% Similarity=-0.022 Sum_probs=93.0
Q ss_pred cccceEEecCCccHHHH----HHHHHCCCCeE--EEeeh-hhHhhhCC----------Cc--eEEeccCCc-C------C
Q 044482 179 ELKKLVDVASCLGANMS----LIVNTYPQITG--INFDL-PYVIKNAP----------CV--EHVEGDMFV-N------V 232 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~----~l~~~~p~~~~--~~~Dl-p~~i~~a~----------ri--~~~~gd~~~-~------~ 232 (345)
...+|||||||+|.++. .++.++|+.++ +++|. ++|++.++ ++ .+..++..+ + +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 45689999999997654 45567788854 99998 88887554 23 334555533 2 2
Q ss_pred CCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcC---CC
Q 044482 233 PSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFP---QA 307 (345)
Q Consensus 233 p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~ 307 (345)
+++ |+|++.++|||++|.. +.|+++++.||| ||++++. +... + .... ....-. ....+ ..
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~-~~~~--~--~~~~----~~~~~~-~~~~~~~~~~ 196 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGT---NAKMLII-VVSG--S--SGWD----KLWKKY-GSRFPQDDLC 196 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEE---EEEEEEE-EECT--T--SHHH----HHHHHH-GGGSCCCTTC
T ss_pred CCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCC---CcEEEEE-EecC--C--ccHH----HHHHHH-HHhccCCCcc
Confidence 333 9999999999999874 789999999999 9999998 5421 1 1110 000000 00110 12
Q ss_pred ccCCHHHHHHHHHHCCCCceEE
Q 044482 308 KGRTAGEFKALAMAAGFGTIKV 329 (345)
Q Consensus 308 ~~rt~~e~~~ll~~aGf~~~~~ 329 (345)
..++.++|.++|+++||++++.
T Consensus 197 ~~~~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 197 QYITSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp CCCCHHHHHHHHHHHTCCEEEE
T ss_pred cCCCHHHHHHHHHHCCCceEEE
Confidence 4578999999999999998764
No 78
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.52 E-value=2.7e-14 Score=129.79 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=80.4
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCc-C---CCCC--C
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFV-N---VPSG--Q 236 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~-~---~p~~--D 236 (345)
..+..+|||||||+|.++..++++.+ +++++|+ +.+++.++ ++.+..+|+.+ + ++.+ |
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence 34557999999999999999999844 8999999 77877663 67889999887 5 5543 9
Q ss_pred EEEec-cccccCCh-----hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTK-SVLLNWSD-----EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~-~vlh~~~d-----~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|++. +++||+++ ++..++|+++++.|+| ||++++.
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 174 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVID 174 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEE
Confidence 99998 99999998 7778999999999999 9999877
No 79
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.51 E-value=1.2e-14 Score=125.15 Aligned_cols=146 Identities=7% Similarity=-0.073 Sum_probs=103.5
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC--CEEEeccccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG--QAIFTKSVLL 245 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~--D~i~~~~vlh 245 (345)
....+|||||||+|.++..++.. ++.+++++|. +.+++.++ +++++.+|+.+ +++.+ |+|++.+++|
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 34579999999999986555544 5679999999 78877665 68999999988 66643 9999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhc-CCCccCCHHHHHHHHHHCCC
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLF-PQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~rt~~e~~~ll~~aGf 324 (345)
|++.++..++|+++++.|+| ||++++. +...++.............+.. ..... ..+..++.+++.++++++||
T Consensus 101 ~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~g~ 175 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKP---GGLACIN-FLTTKDERYNKGEKIGEGEFLQ-LERGEKVIHSYVSLEEADKYFKDMKV 175 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEE-EEETTSTTTTCSEEEETTEEEE-CC-CCCEEEEEECHHHHHHTTTTSEE
T ss_pred hCCHHHHHHHHHHHHHHcCC---CcEEEEE-Eecccchhccchhhhcccccee-ccCCCceeEEecCHHHHHHHHhhcCc
Confidence 99888889999999999999 9999998 7655433211000000000000 00000 01245689999999999998
Q ss_pred CceEE
Q 044482 325 GTIKV 329 (345)
Q Consensus 325 ~~~~~ 329 (345)
...+.
T Consensus 176 ~~~~~ 180 (209)
T 2p8j_A 176 LFKED 180 (209)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 76544
No 80
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.50 E-value=7.1e-14 Score=126.65 Aligned_cols=136 Identities=15% Similarity=0.113 Sum_probs=103.5
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-CEE
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-QAI 238 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D~i 238 (345)
+++.++ .....+|||||||+|.++..++++ +.+++++|+ +.+++.++ +++++.+|+.+ +.+.. |+|
T Consensus 112 ~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i 188 (286)
T 3m70_A 112 VVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFI 188 (286)
T ss_dssp HHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEE
T ss_pred HHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEE
Confidence 344444 345679999999999999999988 558999999 77777665 68999999988 44333 999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHH
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKAL 318 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~l 318 (345)
++..++|+++++....+|+++++.|+| ||.++++ .....+....+ . .....++.++++++
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~---------------~-~~~~~~~~~~l~~~ 248 (286)
T 3m70_A 189 VSTVVFMFLNRERVPSIIKNMKEHTNV---GGYNLIV-AAMSTDDVPCP---------------L-PFSFTFAENELKEY 248 (286)
T ss_dssp EECSSGGGSCGGGHHHHHHHHHHTEEE---EEEEEEE-EEBCCSSSCCS---------------S-CCSCCBCTTHHHHH
T ss_pred EEccchhhCCHHHHHHHHHHHHHhcCC---CcEEEEE-EecCCCCCCCC---------------C-CccccCCHHHHHHH
Confidence 999999999999889999999999999 9998887 55443321110 0 01234567888888
Q ss_pred HHHCCCCceEEE
Q 044482 319 AMAAGFGTIKVI 330 (345)
Q Consensus 319 l~~aGf~~~~~~ 330 (345)
++. |++++..
T Consensus 249 ~~~--~~~~~~~ 258 (286)
T 3m70_A 249 YKD--WEFLEYN 258 (286)
T ss_dssp TTT--SEEEEEE
T ss_pred hcC--CEEEEEE
Confidence 865 8877664
No 81
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.48 E-value=7.1e-14 Score=124.76 Aligned_cols=148 Identities=12% Similarity=-0.010 Sum_probs=108.7
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------C------------------------------
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------C------------------------------ 220 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------r------------------------------ 220 (345)
....+|||||||+|.++..+++..+ .+++++|+ +.+++.++ .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4457899999999999999988776 58999999 77777664 1
Q ss_pred --c-eEEeccCCcC--CCC---C--CEEEeccccccCChh--HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCch
Q 044482 221 --V-EHVEGDMFVN--VPS---G--QAIFTKSVLLNWSDE--QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSS 288 (345)
Q Consensus 221 --i-~~~~gd~~~~--~p~---~--D~i~~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~ 288 (345)
+ +++.+|+.+. .+. + |+|++..+||++++. +...+|+++++.|+| ||++++. +..... .
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~-~~~~~~-----~ 204 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMV-DALKSS-----Y 204 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEE-EESSCC-----E
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEE-ecCCCc-----e
Confidence 7 8999999873 233 3 999999999955433 567899999999999 9999999 643221 0
Q ss_pred hhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCC----------ceEEEEEEcC
Q 044482 289 INRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSY----------CYWVIEFYKP 344 (345)
Q Consensus 289 ~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~----------~~~vi~~~k~ 344 (345)
. ..-+. .. .....+.+++.++|+++||+++++...+. ...++.++|+
T Consensus 205 ---~-~~~~~----~~-~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 261 (265)
T 2i62_A 205 ---Y-MIGEQ----KF-SSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKP 261 (265)
T ss_dssp ---E-EETTE----EE-ECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECC
T ss_pred ---E-EcCCc----cc-cccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccc
Confidence 0 00000 00 12245789999999999999998876541 3456777775
No 82
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.48 E-value=5.2e-14 Score=126.21 Aligned_cols=149 Identities=15% Similarity=0.032 Sum_probs=104.2
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------------------------------
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------------------------------- 219 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------------------------- 219 (345)
....+|||||||+|.++..++...- .+++++|+ +.+++.++
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 3457899999999988776554431 26999999 77777543
Q ss_pred -Cce-EEeccCCcCCC-----C-C-CEEEeccccccCC--hhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCch
Q 044482 220 -CVE-HVEGDMFVNVP-----S-G-QAIFTKSVLLNWS--DEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSS 288 (345)
Q Consensus 220 -ri~-~~~gd~~~~~p-----~-~-D~i~~~~vlh~~~--d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~ 288 (345)
+++ ++.+|+.+..| . . |+|+++.+||+.. .++..++|++++++||| ||++++. +......
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~-~~~~~~~----- 203 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTT-VTLRLPS----- 203 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEE-EESSCCE-----
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEE-EeecCcc-----
Confidence 122 88999987322 2 2 9999999999853 35667899999999999 9999999 6542210
Q ss_pred hhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecC----------CceEEEEEEcCC
Q 044482 289 INRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRS----------YCYWVIEFYKPK 345 (345)
Q Consensus 289 ~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~----------~~~~vi~~~k~~ 345 (345)
....- ... .....+.+++.++|+++||+++++...+ ....++.|+|++
T Consensus 204 -----~~~g~---~~~-~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~~ 261 (263)
T 2a14_A 204 -----YMVGK---REF-SCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKP 261 (263)
T ss_dssp -----EEETT---EEE-ECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC
T ss_pred -----ceeCC---eEe-eccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEecC
Confidence 00000 000 1124589999999999999998886643 135677888863
No 83
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.47 E-value=4.5e-13 Score=112.08 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=99.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCCCceEEeccCCcCCCCC--CEEEeccccccCChh-----
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAPCVEHVEGDMFVNVPSG--QAIFTKSVLLNWSDE----- 250 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ri~~~~gd~~~~~p~~--D~i~~~~vlh~~~d~----- 250 (345)
...+|||||||+|.++..++++. +++++|+ +.+++...+++++.+|+.++++.+ |+|+++..+|..++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~~~~ 99 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALESHRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPIIGG 99 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHTCSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTTTBC
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhcccCCeEEECChhhhcccCCCCEEEECCCCccCCccccccC
Confidence 44699999999999999999987 8999999 888888559999999999866633 999999888866554
Q ss_pred --HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceE
Q 044482 251 --QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIK 328 (345)
Q Consensus 251 --~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~ 328 (345)
+...+++++.+.+ | ||++++. +... .+.+++.++++++||+.++
T Consensus 100 ~~~~~~~~~~~~~~l-p---gG~l~~~-~~~~-----------------------------~~~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 100 GYLGREVIDRFVDAV-T---VGMLYLL-VIEA-----------------------------NRPKEVLARLEERGYGTRI 145 (170)
T ss_dssp CGGGCHHHHHHHHHC-C---SSEEEEE-EEGG-----------------------------GCHHHHHHHHHHTTCEEEE
T ss_pred CcchHHHHHHHHhhC-C---CCEEEEE-EecC-----------------------------CCHHHHHHHHHHCCCcEEE
Confidence 3467889999999 9 9999998 3100 1367889999999999888
Q ss_pred EEecC-CceEEEEE
Q 044482 329 VICRS-YCYWVIEF 341 (345)
Q Consensus 329 ~~~~~-~~~~vi~~ 341 (345)
+.... +...++..
T Consensus 146 ~~~~~~~~e~~~~~ 159 (170)
T 3q87_B 146 LKVRKILGETVYII 159 (170)
T ss_dssp EEEEECSSSEEEEE
T ss_pred EEeeccCCceEEEE
Confidence 76553 33344433
No 84
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.47 E-value=2.1e-13 Score=123.85 Aligned_cols=150 Identities=10% Similarity=-0.058 Sum_probs=105.0
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CC-CCC--CEEEecc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NV-PSG--QAIFTKS 242 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~-p~~--D~i~~~~ 242 (345)
....+|||||||+|.++..+++. +..+++++|+ +.+++.++ +++++.+|+.+ ++ +.+ |+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 45679999999999999998876 5568999999 78877665 47999999988 66 333 9999999
Q ss_pred cccc--CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCC---------CCCchh---------hh-hhhccchhhh
Q 044482 243 VLLN--WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPES---------PEFSSI---------NR-NILTLDIVMY 301 (345)
Q Consensus 243 vlh~--~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~---------~~~~~~---------~~-~~~~~d~~~~ 301 (345)
++|+ .+.++...+|+++++.|+| ||++++. ....... ...... .. ......+...
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 217 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRP---GGYFIMT-VPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL 217 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEE-EECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEE-ECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence 9998 6777788999999999999 9999988 5321100 000000 00 0000000000
Q ss_pred hhc--CCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 302 DLF--PQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 302 ~~~--~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
... .....++.++++++++++||+++++...
T Consensus 218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred hhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 000 0123468999999999999999988764
No 85
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.46 E-value=5.8e-14 Score=134.16 Aligned_cols=152 Identities=13% Similarity=0.075 Sum_probs=107.5
Q ss_pred hHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEec-----cCCc-CCC
Q 044482 163 TAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEG-----DMFV-NVP 233 (345)
Q Consensus 163 ~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~g-----d~~~-~~p 233 (345)
.......+++.++ .....+|||||||+|.++..++++. .+++++|+ +.+++.++ ++..... +... +++
T Consensus 92 ~~~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 168 (416)
T 4e2x_A 92 FAMLARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRT 168 (416)
T ss_dssp HHHHHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccC
Confidence 3344556777776 6677899999999999999999874 48999999 78888776 3333332 2211 223
Q ss_pred -CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCC
Q 044482 234 -SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRT 311 (345)
Q Consensus 234 -~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt 311 (345)
.. |+|++.++|||+++. ..+|+++++.|+| ||++++. ....... . ....++.. . ......++
T Consensus 169 ~~~fD~I~~~~vl~h~~d~--~~~l~~~~r~Lkp---gG~l~i~-~~~~~~~-----~--~~~~~~~~--~-~~~~~~~s 232 (416)
T 4e2x_A 169 EGPANVIYAANTLCHIPYV--QSVLEGVDALLAP---DGVFVFE-DPYLGDI-----V--AKTSFDQI--F-DEHFFLFS 232 (416)
T ss_dssp HCCEEEEEEESCGGGCTTH--HHHHHHHHHHEEE---EEEEEEE-EECHHHH-----H--HHTCGGGC--S-TTCCEECC
T ss_pred CCCEEEEEECChHHhcCCH--HHHHHHHHHHcCC---CeEEEEE-eCChHHh-----h--hhcchhhh--h-hhhhhcCC
Confidence 23 999999999999865 5899999999999 9999887 4332110 0 00011110 0 11344578
Q ss_pred HHHHHHHHHHCCCCceEEEecC
Q 044482 312 AGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 312 ~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
.++|+++++++||+++++...+
T Consensus 233 ~~~l~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 233 ATSVQGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEEEcc
Confidence 9999999999999999998765
No 86
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.45 E-value=4.1e-13 Score=117.84 Aligned_cols=145 Identities=12% Similarity=0.092 Sum_probs=103.6
Q ss_pred HHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCcC---CC--CC-C
Q 044482 171 LEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFVN---VP--SG-Q 236 (345)
Q Consensus 171 ~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~~---~p--~~-D 236 (345)
++.++ .....+|||||||+|.++..+++.+|..+++++|. +.+++.++ +++++.+|+.++ .+ .. |
T Consensus 67 l~~~~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D 145 (230)
T 1fbn_A 67 LKVMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEE
T ss_pred ccccC-CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEE
Confidence 34444 55678999999999999999999998889999999 77775433 789999998762 22 33 8
Q ss_pred EEEeccccccCChh-HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 237 AIFTKSVLLNWSDE-QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 237 ~i~~~~vlh~~~d~-~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
+|+ |++++. ....+|+++++.|+| ||++++. -.....+...+. . .. ..+++
T Consensus 146 ~v~-----~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~~----------~--~~-------~~~~l 197 (230)
T 1fbn_A 146 VIY-----EDVAQPNQAEILIKNAKWFLKK---GGYGMIA-IKARSIDVTKDP----------K--EI-------FKEQK 197 (230)
T ss_dssp EEE-----ECCCSTTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCSSSCH----------H--HH-------HHHHH
T ss_pred EEE-----EecCChhHHHHHHHHHHHhCCC---CcEEEEE-EecCCCCCCCCH----------H--Hh-------hHHHH
Confidence 887 565544 345679999999999 9998885 111111110000 0 01 14677
Q ss_pred HHHHHHCCCCceEEEecCCc---eEEEEEEcCC
Q 044482 316 KALAMAAGFGTIKVICRSYC---YWVIEFYKPK 345 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~~~~---~~vi~~~k~~ 345 (345)
. +|+++||+.+++..+... +.++.++|++
T Consensus 198 ~-~l~~~Gf~~~~~~~~~~~~~~~~~v~~~k~~ 229 (230)
T 1fbn_A 198 E-ILEAGGFKIVDEVDIEPFEKDHVMFVGIWEG 229 (230)
T ss_dssp H-HHHHHTEEEEEEEECTTTSTTEEEEEEEECC
T ss_pred H-HHHHCCCEEEEEEccCCCccceEEEEEEeCC
Confidence 7 999999999998887654 7888888763
No 87
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.45 E-value=2.1e-13 Score=121.85 Aligned_cols=93 Identities=10% Similarity=0.013 Sum_probs=80.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---CceEEeccCCc-CCCCC--CEEEeccccccCChhH
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQ 251 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~ 251 (345)
...+|||||||+|.++..|++++. +++++|+ +.|++.|+ +++++.+|+.+ +++++ |+|++..++|+++.+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~- 115 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD- 115 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH-
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH-
Confidence 346899999999999999998864 7899999 88999887 89999999988 77765 999999999887654
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 252 CLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 252 ~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
+.+++++++||| ||+|++. +.-.
T Consensus 116 --~~~~e~~rvLkp---gG~l~~~-~~~~ 138 (257)
T 4hg2_A 116 --RFWAELRRVARP---GAVFAAV-TYGL 138 (257)
T ss_dssp --HHHHHHHHHEEE---EEEEEEE-EECC
T ss_pred --HHHHHHHHHcCC---CCEEEEE-ECCC
Confidence 689999999999 9999888 6543
No 88
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.45 E-value=4e-13 Score=119.90 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=98.8
Q ss_pred cccceEEecCCc--cHHHHHH-HHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCC-----C---CC-C
Q 044482 179 ELKKLVDVASCL--GANMSLI-VNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNV-----P---SG-Q 236 (345)
Q Consensus 179 ~~~~vlDiGgG~--G~~~~~l-~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~-----p---~~-D 236 (345)
+..+|||||||+ +.++..+ .+..|+.+++++|. |.|++.|+ +++|+.+|+.++. | .. |
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 457899999997 3344444 45689999999999 99999886 4899999998731 1 11 3
Q ss_pred -----EEEeccccccCChhH-HHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccC
Q 044482 237 -----AIFTKSVLLNWSDEQ-CLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGR 310 (345)
Q Consensus 237 -----~i~~~~vlh~~~d~~-~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r 310 (345)
+++++.+||+++|++ ...+|++++++|+| ||.|++. +...+..+. . .....+.....-. ....|
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls-~~~~d~~p~--~---~~~~~~~~~~~g~-p~~~r 227 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMS-IGTAEFAPQ--E---VGRVAREYAARNM-PMRLR 227 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEE-EECCTTSHH--H---HHHHHHHHHHTTC-CCCCC
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEE-eccCCCCHH--H---HHHHHHHHHhcCC-CCccC
Confidence 789999999999976 47899999999999 9999998 765432211 1 1111221111111 24568
Q ss_pred CHHHHHHHHHHCCCCceE
Q 044482 311 TAGEFKALAMAAGFGTIK 328 (345)
Q Consensus 311 t~~e~~~ll~~aGf~~~~ 328 (345)
|.+|+.++|. ||++++
T Consensus 228 s~~ei~~~f~--Glelve 243 (277)
T 3giw_A 228 THAEAEEFFE--GLELVE 243 (277)
T ss_dssp CHHHHHHTTT--TSEECT
T ss_pred CHHHHHHHhC--CCcccC
Confidence 9999999994 998654
No 89
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.45 E-value=2.4e-13 Score=121.18 Aligned_cols=129 Identities=9% Similarity=-0.049 Sum_probs=99.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------------------CceEEeccCCc-
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------------------CVEHVEGDMFV- 230 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------------------ri~~~~gd~~~- 230 (345)
...+|||+|||+|..+..|+++ +.+++++|+ +.+++.|+ +++++.+|+++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 4579999999999999999987 458999999 77776542 57899999998
Q ss_pred CCC--CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCC
Q 044482 231 NVP--SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA 307 (345)
Q Consensus 231 ~~p--~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 307 (345)
+.+ .. |+|+++.+||++++++..++++++++.|+| ||+++++ ....+... .....
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~-~~~~~~~~------------------~~g~~ 203 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVA-VLSYDPTK------------------HAGPP 203 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEE-EEECCTTS------------------CCCSS
T ss_pred CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEE-EEecCCcc------------------CCCCC
Confidence 543 23 999999999999988888999999999999 9999766 43322110 00011
Q ss_pred ccCCHHHHHHHHHHCCCCceEEEec
Q 044482 308 KGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 308 ~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
...+.+++.+++++ +|+++.....
T Consensus 204 ~~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 204 FYVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CCCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred CCCCHHHHHHHhhC-CeEEEEEecc
Confidence 12578999999988 5988776543
No 90
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.44 E-value=2.6e-13 Score=116.69 Aligned_cols=128 Identities=9% Similarity=0.006 Sum_probs=104.2
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCCC-CEEEecccccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPSG-QAIFTKSVLLN 246 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~~-D~i~~~~vlh~ 246 (345)
....+|||||||+|.++..+++ .+..+++++|+ +.+++.++ +++++.+|+.+..+.. |+|++...+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 3457999999999999999776 57779999999 88887766 3899999998754444 99999988765
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCc
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGT 326 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~ 326 (345)
...+++++++.|+| ||++++. +.... +.+++.++++++||++
T Consensus 138 -----~~~~l~~~~~~L~~---gG~l~~~-~~~~~-----------------------------~~~~~~~~~~~~Gf~~ 179 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNE---DGQVIFS-GIDYL-----------------------------QLPKIEQALAENSFQI 179 (205)
T ss_dssp -----HHHHGGGSGGGEEE---EEEEEEE-EEEGG-----------------------------GHHHHHHHHHHTTEEE
T ss_pred -----HHHHHHHHHHhcCC---CCEEEEE-ecCcc-----------------------------cHHHHHHHHHHcCCce
Confidence 36789999999999 9999887 33110 2677899999999999
Q ss_pred eEEEecCCceEEEEEEcC
Q 044482 327 IKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 327 ~~~~~~~~~~~vi~~~k~ 344 (345)
+++........++.-+|+
T Consensus 180 ~~~~~~~~w~~~~~~~~~ 197 (205)
T 3grz_A 180 DLKMRAGRWIGLAISRKH 197 (205)
T ss_dssp EEEEEETTEEEEEEEECC
T ss_pred EEeeccCCEEEEEEeccc
Confidence 998888777888877765
No 91
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.44 E-value=5.1e-13 Score=114.44 Aligned_cols=128 Identities=9% Similarity=0.013 Sum_probs=97.2
Q ss_pred ceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC--CEEEeccccccCCh
Q 044482 182 KLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSD 249 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d 249 (345)
+|||||||+|.++..+++. +.+++++|. +.+++.++ +++++.+|+.+ +++.+ |+|++. +++++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~ 107 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPS 107 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCH
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCH
Confidence 9999999999999999986 468999999 77877665 68899999988 66643 999984 456677
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEE
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKV 329 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~ 329 (345)
++...+|+++++.|+| ||++++. +....... .. ... ... ....++.++++++++ ||+++++
T Consensus 108 ~~~~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~-------~~--~~~---~~~-~~~~~~~~~l~~~l~--Gf~v~~~ 168 (202)
T 2kw5_A 108 SLRQQLYPKVYQGLKP---GGVFILE-GFAPEQLQ-------YN--TGG---PKD-LDLLPKLETLQSELP--SLNWLIA 168 (202)
T ss_dssp HHHHHHHHHHHTTCCS---SEEEEEE-EECTTTGG-------GT--SCC---SSS-GGGCCCHHHHHHHCS--SSCEEEE
T ss_pred HHHHHHHHHHHHhcCC---CcEEEEE-Eecccccc-------CC--CCC---CCc-ceeecCHHHHHHHhc--CceEEEE
Confidence 7888999999999999 9999998 65432210 00 000 000 123578999999999 9999887
Q ss_pred Eec
Q 044482 330 ICR 332 (345)
Q Consensus 330 ~~~ 332 (345)
...
T Consensus 169 ~~~ 171 (202)
T 2kw5_A 169 NNL 171 (202)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 92
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.8e-13 Score=124.88 Aligned_cols=92 Identities=24% Similarity=0.174 Sum_probs=80.2
Q ss_pred ccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC-----------CceEEeccCCc-CCCC------C--
Q 044482 178 KELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP-----------CVEHVEGDMFV-NVPS------G-- 235 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~-~~p~------~-- 235 (345)
....+|||||||+|.++..+++++ |..+++++|+ +.+++.++ +++++.+|+.+ +++. +
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 456899999999999999999987 8899999999 77776552 79999999987 5554 4
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++..++|++ +. .++|+++++.|+| ||.+++.
T Consensus 115 D~V~~~~~l~~~-~~--~~~l~~~~~~Lkp---gG~l~i~ 148 (299)
T 3g5t_A 115 DMITAVECAHWF-DF--EKFQRSAYANLRK---DGTIAIW 148 (299)
T ss_dssp EEEEEESCGGGS-CH--HHHHHHHHHHEEE---EEEEEEE
T ss_pred eEEeHhhHHHHh-CH--HHHHHHHHHhcCC---CcEEEEE
Confidence 999999999999 43 5899999999999 9999995
No 93
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.42 E-value=4.5e-13 Score=116.37 Aligned_cols=140 Identities=9% Similarity=-0.024 Sum_probs=94.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhh----CC---------CceEEeccCCc-CCCCC-CEEEe
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKN----AP---------CVEHVEGDMFV-NVPSG-QAIFT 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~----a~---------ri~~~~gd~~~-~~p~~-D~i~~ 240 (345)
.....+|||||||+|.++..+++++|+.+++++|+ +.+++. ++ +++++.+|+.+ +++.+ |.|++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 45667999999999999999999999999999999 776653 11 78999999988 55543 66552
Q ss_pred cc---cc--ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 241 KS---VL--LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 241 ~~---vl--h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
.. .+ |++++. ..+|++++++|+| ||++++. -.........+ .+. ....-......+++
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~---------~~~--~~~~~~~~~~~~~l 167 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRP---GASFLVA-LNLHAWRPSVP---------EVG--EHPEPTPDSADEWL 167 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEEE---EEEEEEE-EEGGGBTTBCG---------GGT--TCCCCCHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcCC---CcEEEEE-ecccccccccc---------ccc--cCCccchHHHHHHH
Confidence 21 22 244444 5789999999999 9999886 32211110000 000 00001112234568
Q ss_pred HHHHHHCCCCceEEEecC
Q 044482 316 KALAMAAGFGTIKVICRS 333 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~~ 333 (345)
.++++++||++.++....
T Consensus 168 ~~~l~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 168 APRYAEAGWKLADCRYLE 185 (218)
T ss_dssp HHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHcCCCceeeeccc
Confidence 889999999998886653
No 94
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.42 E-value=2.1e-12 Score=110.95 Aligned_cols=121 Identities=14% Similarity=0.073 Sum_probs=97.0
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC--CC-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP--SG- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p--~~- 235 (345)
.+++.++ .....+|||||||+|.++..+++.+|..+++++|+ +.+++.++ +++++.+|+.+..+ ..
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence 4556666 66778999999999999999999999999999999 88887665 68999999987444 23
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|+|++...++ ....+|+++++.|+| ||++++. .... .+.+++
T Consensus 110 D~i~~~~~~~-----~~~~~l~~~~~~Lkp---gG~l~~~-~~~~-----------------------------~~~~~~ 151 (204)
T 3e05_A 110 DRVFIGGSGG-----MLEEIIDAVDRRLKS---EGVIVLN-AVTL-----------------------------DTLTKA 151 (204)
T ss_dssp SEEEESCCTT-----CHHHHHHHHHHHCCT---TCEEEEE-ECBH-----------------------------HHHHHH
T ss_pred CEEEECCCCc-----CHHHHHHHHHHhcCC---CeEEEEE-eccc-----------------------------ccHHHH
Confidence 9999998876 335789999999999 9999988 3210 025678
Q ss_pred HHHHHHCCCCceEE
Q 044482 316 KALAMAAGFGTIKV 329 (345)
Q Consensus 316 ~~ll~~aGf~~~~~ 329 (345)
.++++++|| .+++
T Consensus 152 ~~~l~~~g~-~~~~ 164 (204)
T 3e05_A 152 VEFLEDHGY-MVEV 164 (204)
T ss_dssp HHHHHHTTC-EEEE
T ss_pred HHHHHHCCC-ceeE
Confidence 899999998 4443
No 95
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.41 E-value=2.3e-13 Score=117.27 Aligned_cols=144 Identities=14% Similarity=0.057 Sum_probs=94.2
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCC----
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPS---- 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~---- 234 (345)
..+++.++......+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++ +++++.+|+.++++.
T Consensus 19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 98 (215)
T 4dzr_A 19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAER 98 (215)
T ss_dssp HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhc
Confidence 34455544225668999999999999999999999999999999 88888776 478899999874442
Q ss_pred -C--CEEEecccc------ccCChhHH------------------HHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCc
Q 044482 235 -G--QAIFTKSVL------LNWSDEQC------------------LKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFS 287 (345)
Q Consensus 235 -~--D~i~~~~vl------h~~~d~~~------------------~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~ 287 (345)
+ |+|+++..+ ++++++.. ..+++++++.|+| ||+++++ +.-.
T Consensus 99 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~------- 167 (215)
T 4dzr_A 99 GRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFL-EVGH------- 167 (215)
T ss_dssp TCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEE-ECTT-------
T ss_pred cCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEE-EECC-------
Confidence 3 999996433 34443332 6889999999999 9995555 3210
Q ss_pred hhhhhhhccchhhhhhcCCCccCCHHHHHHHHH--HCCCCceEEEecC-CceEEEEEEcC
Q 044482 288 SINRNILTLDIVMYDLFPQAKGRTAGEFKALAM--AAGFGTIKVICRS-YCYWVIEFYKP 344 (345)
Q Consensus 288 ~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~--~aGf~~~~~~~~~-~~~~vi~~~k~ 344 (345)
...+++.++++ ++||..+++.... +...++.++|.
T Consensus 168 ----------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 168 ----------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTRE 205 (215)
T ss_dssp ----------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEEC
T ss_pred ----------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEc
Confidence 12566788899 9999888776654 44566666653
No 96
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.40 E-value=4.7e-12 Score=114.19 Aligned_cols=139 Identities=14% Similarity=0.124 Sum_probs=106.2
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-C-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS-G-Q 236 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~-~-D 236 (345)
.+++.++ ....+|||||||+|.++..+++.+|+.+++++|+ +.+++.++ +++++.+|++++++. . |
T Consensus 101 ~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD 178 (276)
T 2b3t_A 101 QALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFA 178 (276)
T ss_dssp HHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEE
T ss_pred HHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCcc
Confidence 4444443 3456899999999999999999999999999999 77777665 589999999986653 3 9
Q ss_pred EEEec-------------cccccCCh----------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhh
Q 044482 237 AIFTK-------------SVLLNWSD----------EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNI 293 (345)
Q Consensus 237 ~i~~~-------------~vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~ 293 (345)
+|+++ .++++.+. +...++++++++.|+| ||++++. ..
T Consensus 179 ~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~-~~--------------- 239 (276)
T 2b3t_A 179 MIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLE-HG--------------- 239 (276)
T ss_dssp EEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEE-CC---------------
T ss_pred EEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE-EC---------------
Confidence 99997 34444432 3457899999999999 9988876 21
Q ss_pred hccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEec-CCceEEEEEEc
Q 044482 294 LTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICR-SYCYWVIEFYK 343 (345)
Q Consensus 294 ~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~k 343 (345)
..+.+++.++++++||+.+++... .+...++.+++
T Consensus 240 ---------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 ---------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp ---------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred ---------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 013677899999999998887654 45566776654
No 97
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.40 E-value=1.1e-13 Score=125.58 Aligned_cols=136 Identities=12% Similarity=-0.009 Sum_probs=94.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-C------------------------------------
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-C------------------------------------ 220 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-r------------------------------------ 220 (345)
...+|||||||+|.++ .++...+..+++++|+ +.+++.++ +
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 4578999999999954 3444444569999999 78876543 1
Q ss_pred --ceEEeccCCcC-------CCCC--CEEEeccccccCChh--HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCc
Q 044482 221 --VEHVEGDMFVN-------VPSG--QAIFTKSVLLNWSDE--QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFS 287 (345)
Q Consensus 221 --i~~~~gd~~~~-------~p~~--D~i~~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~ 287 (345)
++++.+|+.+. ++++ |+|++..+||+.+++ +..++|++++++||| ||++++. +......
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~-~~~~~~~---- 221 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLI-GALEESW---- 221 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEE-EEESCCE----
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEE-EecCcce----
Confidence 33555688762 2233 999999999996543 567899999999999 9999998 6432110
Q ss_pred hhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecC
Q 044482 288 SINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 288 ~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
. ...+. .. ....++.++|.++|+++||+++++...+
T Consensus 222 ----~-~~~~~----~~-~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 222 ----Y-LAGEA----RL-TVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp ----E-EETTE----EE-ECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ----E-EcCCe----ee-eeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 0 00000 00 1224689999999999999998876543
No 98
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.39 E-value=1e-12 Score=113.37 Aligned_cols=139 Identities=12% Similarity=-0.032 Sum_probs=97.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCC-eEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC--CEEE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQI-TGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG--QAIF 239 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~--D~i~ 239 (345)
.+++.+. ....+|||||||+|.++..+ +. +++++|. +.+++.++ +++++.+|+.+ +++++ |+|+
T Consensus 28 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 28 RALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVL 100 (211)
T ss_dssp HHHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEE
T ss_pred HHHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEE
Confidence 3445443 25679999999999999887 44 8999999 78887766 78999999987 66653 9999
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHH
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALA 319 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll 319 (345)
+.+++||+++. .++|+++++.|+| ||++++. +.... ................... ....+|.++++++|
T Consensus 101 ~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~-~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~s~~~l~~~l 169 (211)
T 2gs9_A 101 LFTTLEFVEDV--ERVLLEARRVLRP---GGALVVG-VLEAL----SPWAALYRRLGEKGVLPWA-QARFLAREDLKALL 169 (211)
T ss_dssp EESCTTTCSCH--HHHHHHHHHHEEE---EEEEEEE-EECTT----SHHHHHHHHHHHTTCTTGG-GCCCCCHHHHHHHH
T ss_pred EcChhhhcCCH--HHHHHHHHHHcCC---CCEEEEE-ecCCc----CcHHHHHHHHhhccCcccc-ccccCCHHHHHHHh
Confidence 99999999876 4899999999999 9999998 54221 1110000000000000011 23457999999999
Q ss_pred HHCCCCceEE
Q 044482 320 MAAGFGTIKV 329 (345)
Q Consensus 320 ~~aGf~~~~~ 329 (345)
+ | ++++
T Consensus 170 ~--G--~~~~ 175 (211)
T 2gs9_A 170 G--P--PEAE 175 (211)
T ss_dssp C--S--CSEE
T ss_pred c--C--ccee
Confidence 9 8 4444
No 99
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.37 E-value=2.3e-12 Score=112.80 Aligned_cols=141 Identities=17% Similarity=0.060 Sum_probs=90.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh--hhHhhhC---C---------CceEEeccCCcCCCC--CCEEEecc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL--PYVIKNA---P---------CVEHVEGDMFVNVPS--GQAIFTKS 242 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl--p~~i~~a---~---------ri~~~~gd~~~~~p~--~D~i~~~~ 242 (345)
...+|||||||+|.++..+++++|+.+++++|+ +.|++.| + +++++.+|+.+. |. .|.|.+..
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~~d~v~~i~ 102 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFELKNIADSIS 102 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGGTTCEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhccCeEEEEE
Confidence 457899999999999999999999999999999 4555544 3 689999998762 42 25555555
Q ss_pred ccccCChhH------HHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHH
Q 044482 243 VLLNWSDEQ------CLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 243 vlh~~~d~~------~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~ 316 (345)
+.+.|+... ...+|++++++||| ||++++. ..+... ...... ...+ .... .......+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~-~~~~~~-~~~~~~----~~~~---~~~~-~~~~~~~~el~ 169 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFV-TTYSDS-YEEAEI----KKRG---LPLL-SKAYFLSEQYK 169 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEE-ECCCC----------------------C-CHHHHHSHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEE-Eecccc-chhchh----hhcC---CCCC-ChhhcchHHHH
Confidence 544444321 13589999999999 9999995 433222 110000 0000 0000 00011123599
Q ss_pred HHHHHCCCCceEEEecC
Q 044482 317 ALAMAAGFGTIKVICRS 333 (345)
Q Consensus 317 ~ll~~aGf~~~~~~~~~ 333 (345)
++++++||++.++...+
T Consensus 170 ~~l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 170 AELSNSGFRIDDVKELD 186 (225)
T ss_dssp HHHHHHTCEEEEEEEEC
T ss_pred HHHHHcCCCeeeeeecC
Confidence 99999999988876554
No 100
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.37 E-value=3.4e-12 Score=107.96 Aligned_cols=137 Identities=17% Similarity=0.195 Sum_probs=105.2
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------C--ceEEeccCCcCCCC-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------C--VEHVEGDMFVNVPS-G 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------r--i~~~~gd~~~~~p~-~ 235 (345)
.+++.+. .....+|||||||+|.++..+++. ..+++++|+ +.+++.++ + ++++.+|+.+..+. .
T Consensus 43 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (194)
T 1dus_A 43 ILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCC
Confidence 4555555 566789999999999999999988 678999998 77777655 2 89999999886554 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|+|++...+|+ ..+....+++++++.|+| ||++++. ..... ...+
T Consensus 120 ~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~---gG~l~~~-~~~~~-----------------------------~~~~ 165 (194)
T 1dus_A 120 YNKIITNPPIRA-GKEVLHRIIEEGKELLKD---NGEIWVV-IQTKQ-----------------------------GAKS 165 (194)
T ss_dssp EEEEEECCCSTT-CHHHHHHHHHHHHHHEEE---EEEEEEE-EESTH-----------------------------HHHH
T ss_pred ceEEEECCCccc-chhHHHHHHHHHHHHcCC---CCEEEEE-ECCCC-----------------------------ChHH
Confidence 99999888874 455667899999999999 9999988 32100 0235
Q ss_pred HHHHHHHCCCCceEEEecCCceEEEEEEc
Q 044482 315 FKALAMAAGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 343 (345)
+.+.+++. |..+++........++.++|
T Consensus 166 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 166 LAKYMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHHHHH-hcceEEEecCCcEEEEEEee
Confidence 67778777 77777776666677777765
No 101
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.36 E-value=2.1e-12 Score=121.01 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=88.2
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC------------------CCceEEecc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA------------------PCVEHVEGD 227 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a------------------~ri~~~~gd 227 (345)
...+++.+. .....+|||||||+|..+..++..++..+++++|+ +.+++.| .+|+|+.||
T Consensus 162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 455667666 77788999999999999999999887767999999 5554332 168999999
Q ss_pred CCc-CCC----CCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCC
Q 044482 228 MFV-NVP----SGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESP 284 (345)
Q Consensus 228 ~~~-~~p----~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~ 284 (345)
+++ +++ ..|+|+++++++ + ++....|+++++.||| ||+|++. |.+.+++.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKP---GGrIVss-E~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKE---GGRIVSS-KPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCT---TCEEEES-SCSSCTTC
T ss_pred ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCC---CcEEEEe-ecccCCCC
Confidence 998 553 349999988774 3 3446778999999999 9999999 99988754
No 102
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.36 E-value=3.4e-13 Score=118.99 Aligned_cols=130 Identities=11% Similarity=-0.006 Sum_probs=90.2
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc---CCCCC--CEEEe---
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV---NVPSG--QAIFT--- 240 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~---~~p~~--D~i~~--- 240 (345)
....+|||||||+|..+..+++..|. +++++|+ |.+++.|+ +++++.+|+.. +++++ |.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 35579999999999999999988775 7899999 88988776 57888888754 45543 77764
Q ss_pred --ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHH
Q 044482 241 --KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKAL 318 (345)
Q Consensus 241 --~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~l 318 (345)
...++|+.+. ..+++++++.||| ||+++++ +...... ......+ .-.....+.+...
T Consensus 138 ~~~~~~~~~~~~--~~~~~e~~rvLkP---GG~l~f~-~~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~ 196 (236)
T 3orh_A 138 PLSEETWHTHQF--NFIKNHAFRLLKP---GGVLTYC-NLTSWGE-------LMKSKYS--------DITIMFEETQVPA 196 (236)
T ss_dssp CCBGGGTTTHHH--HHHHHTHHHHEEE---EEEEEEC-CHHHHHH-------HTTTTCS--------CHHHHHHHHTHHH
T ss_pred ecccchhhhcch--hhhhhhhhheeCC---CCEEEEE-ecCCchh-------hhhhhhh--------hhhhhhHHHHHHH
Confidence 4555666554 5889999999999 9998877 4321100 0000011 0011124567788
Q ss_pred HHHCCCCceEE
Q 044482 319 AMAAGFGTIKV 329 (345)
Q Consensus 319 l~~aGf~~~~~ 329 (345)
|.++||+++.+
T Consensus 197 L~eaGF~~~~i 207 (236)
T 3orh_A 197 LLEAGFRRENI 207 (236)
T ss_dssp HHHHTCCGGGE
T ss_pred HHHcCCeEEEE
Confidence 89999997655
No 103
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.36 E-value=1.2e-12 Score=113.32 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=80.8
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCcCCCC-C-CEEEecccccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFVNVPS-G-QAIFTKSVLLN 246 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~~~p~-~-D~i~~~~vlh~ 246 (345)
.....+|||||||+|.++..++++. .+++++|+ +.+++.++ +++++.+|+.+..+. . |+|++.+++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4566899999999999999999885 47999999 78877665 689999999883353 3 99999999999
Q ss_pred CCh-hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 247 WSD-EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 247 ~~d-~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+++ +...++|+++++.|+| ||.+++.
T Consensus 127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~ 153 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAP---GGHLVFG 153 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 997 5566899999999999 9999987
No 104
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.33 E-value=6.6e-12 Score=114.78 Aligned_cols=95 Identities=9% Similarity=0.061 Sum_probs=73.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------C---------ceEEeccCCc---------CCC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------C---------VEHVEGDMFV---------NVP 233 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------r---------i~~~~gd~~~---------~~p 233 (345)
...+|||||||+|..+..+++.. ..+++++|+ +.+++.|+ . ++|...|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 35789999999998777666543 468999999 88998887 1 4577777721 234
Q ss_pred CC--CEEEecccccc-CChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 234 SG--QAIFTKSVLLN-WSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 234 ~~--D~i~~~~vlh~-~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
.+ |+|++..++|+ |++++...+|++++++|+| ||.+++. ..
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~-~~ 170 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLIT-TM 170 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEE-EE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEE-eC
Confidence 33 99999999997 4555567999999999999 9999887 44
No 105
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.32 E-value=3.6e-12 Score=111.53 Aligned_cols=142 Identities=12% Similarity=0.065 Sum_probs=99.3
Q ss_pred hccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC-------CceEEeccCCcC--CC--CC--CE
Q 044482 173 IYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP-------CVEHVEGDMFVN--VP--SG--QA 237 (345)
Q Consensus 173 ~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~~--~p--~~--D~ 237 (345)
.++ .+...+|||+|||+|.++..+++. .|+-+++++|. |.+++.++ ++..+.+|...+ .+ .. |+
T Consensus 72 ~l~-ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDv 150 (233)
T 4df3_A 72 ELP-VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDG 150 (233)
T ss_dssp CCC-CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred hcC-CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEE
Confidence 344 678899999999999999999997 58899999999 88876543 788888888662 22 22 87
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHH
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKA 317 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ 317 (345)
|++. +++.. +...+++++++.||| ||+++|. ......+... ... ...++-.+
T Consensus 151 Vf~d--~~~~~--~~~~~l~~~~r~LKp---GG~lvI~-ik~r~~d~~~-------------------p~~-~~~~~ev~ 202 (233)
T 4df3_A 151 LYAD--VAQPE--QAAIVVRNARFFLRD---GGYMLMA-IKARSIDVTT-------------------EPS-EVYKREIK 202 (233)
T ss_dssp EEEC--CCCTT--HHHHHHHHHHHHEEE---EEEEEEE-EECCHHHHHT-------------------CCC-HHHHHHHH
T ss_pred EEEe--ccCCh--hHHHHHHHHHHhccC---CCEEEEE-EecccCCCCC-------------------ChH-HHHHHHHH
Confidence 7753 32222 345789999999999 9999987 4221111000 000 11234457
Q ss_pred HHHHCCCCceEEEecCC---ceEEEEEEc
Q 044482 318 LAMAAGFGTIKVICRSY---CYWVIEFYK 343 (345)
Q Consensus 318 ll~~aGf~~~~~~~~~~---~~~vi~~~k 343 (345)
.|+++||+.++...+.+ .|.++.++.
T Consensus 203 ~L~~~GF~l~e~i~L~pf~~~H~lv~~~~ 231 (233)
T 4df3_A 203 TLMDGGLEIKDVVHLDPFDRDHAMIYAVM 231 (233)
T ss_dssp HHHHTTCCEEEEEECTTTSTTEEEEEECC
T ss_pred HHHHCCCEEEEEEccCCCCCceEEEEEEE
Confidence 78999999999888754 477777664
No 106
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.32 E-value=3.9e-12 Score=106.42 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=79.5
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC--C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS--G 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~--~ 235 (345)
.+++.++ .....+|||||||+|.++..+++.+|..+++++|+ +.+++.++ ++ ++.+|..+.++. +
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 4455555 56678999999999999999999999999999999 77777655 46 888888775542 3
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 --QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 --D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++...+|+ ..+++++++.|+| ||++++.
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~---gG~l~~~ 126 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPV---GGRLVAN 126 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCT---TCEEEEE
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCC---CCEEEEE
Confidence 99999999987 4689999999999 9999988
No 107
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.30 E-value=2.3e-12 Score=113.35 Aligned_cols=95 Identities=14% Similarity=0.079 Sum_probs=75.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc---CCCCC--CEEEe-ccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV---NVPSG--QAIFT-KSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~---~~p~~--D~i~~-~~v 243 (345)
...+|||||||+|.++..+++..+ .+++++|+ +.+++.|+ +++++.+|+.+ +++++ |+|++ .+.
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~ 138 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcc
Confidence 457999999999999999976544 38999999 88887665 58899999876 35544 99998 554
Q ss_pred --cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 244 --LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 244 --lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
.+++.......+|+++++.||| ||++++. +.
T Consensus 139 ~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~-~~ 171 (236)
T 1zx0_A 139 LSEETWHTHQFNFIKNHAFRLLKP---GGVLTYC-NL 171 (236)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEE---EEEEEEC-CH
T ss_pred cchhhhhhhhHHHHHHHHHHhcCC---CeEEEEE-ec
Confidence 4555555566889999999999 9999988 54
No 108
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.30 E-value=1.1e-11 Score=108.46 Aligned_cols=135 Identities=13% Similarity=0.162 Sum_probs=98.6
Q ss_pred cccccceEEecCC-ccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCC--cCCCCC--CEEEecc
Q 044482 177 FKELKKLVDVASC-LGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMF--VNVPSG--QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG-~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~--~~~p~~--D~i~~~~ 242 (345)
.....+|||+||| +|.++..+++.. ..+++++|+ +.+++.++ +++++.+|+. .+++++ |+|++.-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 3466899999999 999999999987 678999999 88887766 5899999963 355543 9999987
Q ss_pred ccccCChhH-----------------HHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcC
Q 044482 243 VLLNWSDEQ-----------------CLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFP 305 (345)
Q Consensus 243 vlh~~~d~~-----------------~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 305 (345)
.++..++.+ ...+|+++.+.|+| ||++++. -.. .
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~---~---------------------- 182 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALY-LPD---K---------------------- 182 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEE-EES---C----------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEE-ecc---c----------------------
Confidence 776554422 26799999999999 9999887 110 0
Q ss_pred CCccCCHHHHHHHHHHCCCCceEEEecCC--ceEEEEEEcC
Q 044482 306 QAKGRTAGEFKALAMAAGFGTIKVICRSY--CYWVIEFYKP 344 (345)
Q Consensus 306 ~~~~rt~~e~~~ll~~aGf~~~~~~~~~~--~~~vi~~~k~ 344 (345)
....+++.++++++||++..+....+ ...++...|+
T Consensus 183 ---~~~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~~~ 220 (230)
T 3evz_A 183 ---EKLLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFFKG 220 (230)
T ss_dssp ---HHHHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEECC
T ss_pred ---HhHHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEecc
Confidence 01256788999999998777655544 2456665554
No 109
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.30 E-value=1.1e-11 Score=124.34 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=84.2
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------------CceEEeccCCc-C
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------------CVEHVEGDMFV-N 231 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------------ri~~~~gd~~~-~ 231 (345)
+++.+. .....+|||||||+|.++..+++.. |..+++++|+ +.+++.|+ +++++.+|+.+ +
T Consensus 713 LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp 791 (950)
T 3htx_A 713 ALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD 791 (950)
T ss_dssp HHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC
T ss_pred HHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC
Confidence 344443 3456799999999999999999998 5579999999 77776552 58999999988 5
Q ss_pred CCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 232 VPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 232 ~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+.+ |+|++..++||++++....+++++++.|+| | .++|.
T Consensus 792 ~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIIS 833 (950)
T 3htx_A 792 SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVS 833 (950)
T ss_dssp TTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEE
T ss_pred cccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEE
Confidence 5533 999999999999999888999999999999 8 66665
No 110
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.29 E-value=4e-12 Score=111.60 Aligned_cols=140 Identities=13% Similarity=-0.000 Sum_probs=97.4
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhH----hhhCC---CceEEeccCCcC--CC--C-C-CEEEec
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYV----IKNAP---CVEHVEGDMFVN--VP--S-G-QAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~----i~~a~---ri~~~~gd~~~~--~p--~-~-D~i~~~ 241 (345)
.....+|||+|||+|.++..+++++ |..+++++|+ |.+ ++.++ +++++.+|+.++ ++ . . |+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999986 7789999999 554 33343 799999999872 33 2 3 999985
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
.. ..+....+++++++.|+| ||++++. -.-....... .. ..+-..+ .++|++
T Consensus 155 ~~----~~~~~~~~~~~~~~~Lkp---gG~l~i~-~~~~~~~~~~----------~~---------~~~~~~~-~~~l~~ 206 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRN---GGHFVIS-IKANCIDSTA----------SA---------EAVFASE-VKKMQQ 206 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEE---EEEEEEE-EEHHHHCSSS----------CH---------HHHHHHH-HHTTGG
T ss_pred CC----CccHHHHHHHHHHHHcCC---CeEEEEE-EcccccccCC----------CH---------HHHHHHH-HHHHHH
Confidence 43 334446779999999999 9988886 2110000000 00 0000123 589999
Q ss_pred CCCCceEEEecCC---ceEEEEEEcC
Q 044482 322 AGFGTIKVICRSY---CYWVIEFYKP 344 (345)
Q Consensus 322 aGf~~~~~~~~~~---~~~vi~~~k~ 344 (345)
+||+++++..... .+.++.+++.
T Consensus 207 ~Gf~~~~~~~~~~~~~~~~~v~~~~~ 232 (233)
T 2ipx_A 207 ENMKPQEQLTLEPYERDHAVVVGVYR 232 (233)
T ss_dssp GTEEEEEEEECTTTSSSEEEEEEEEC
T ss_pred CCCceEEEEecCCccCCcEEEEEEeC
Confidence 9999998777653 3777777765
No 111
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.29 E-value=7.1e-12 Score=111.79 Aligned_cols=101 Identities=6% Similarity=0.068 Sum_probs=80.6
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---CceEEeccCCc-CC------CCC-
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---CVEHVEGDMFV-NV------PSG- 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---ri~~~~gd~~~-~~------p~~- 235 (345)
..+++.++ .....+|||||||+|.++..++++ ..+++++|+ +.|++.++ .-.++.+|+.+ +. +..
T Consensus 35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~f 111 (261)
T 3iv6_A 35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHF 111 (261)
T ss_dssp HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCC
T ss_pred HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCc
Confidence 34566666 667789999999999999999987 458999999 88988776 11134455443 22 223
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++..++||++.++...+|+++++.| | ||++++.
T Consensus 112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS 147 (261)
T 3iv6_A 112 DFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRAS 147 (261)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEE
T ss_pred cEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEE
Confidence 9999999999999999899999999999 9 9999887
No 112
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.29 E-value=8.4e-12 Score=114.52 Aligned_cols=95 Identities=15% Similarity=0.027 Sum_probs=78.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------------CceEEeccCCc-C----CC--C
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------------CVEHVEGDMFV-N----VP--S 234 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------------ri~~~~gd~~~-~----~p--~ 234 (345)
...+|||||||+|.++..+++ .+..+++++|+ +.+++.++ +++++.+|+.+ + ++ .
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 567999999999999999987 46779999999 77777654 37899999987 4 43 2
Q ss_pred -C-CEEEeccccccC--ChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 235 -G-QAIFTKSVLLNW--SDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 235 -~-D~i~~~~vlh~~--~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
. |+|++..++|+. +.++...+|++++++|+| ||.+++. ..
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~-~~ 156 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGT-TP 156 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEE-EE
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEe-cC
Confidence 3 999999999987 445677999999999999 9999887 54
No 113
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.29 E-value=3.4e-12 Score=114.81 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=78.3
Q ss_pred ccceEEecCCccH----HHHHHHHHCC----CCeEEEeeh-hhHhhhCC-------------------------------
Q 044482 180 LKKLVDVASCLGA----NMSLIVNTYP----QITGINFDL-PYVIKNAP------------------------------- 219 (345)
Q Consensus 180 ~~~vlDiGgG~G~----~~~~l~~~~p----~~~~~~~Dl-p~~i~~a~------------------------------- 219 (345)
..+|+|+|||+|. +++.+++..| +.++++.|+ +.+++.|+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 4689999999998 6666777755 468999999 78877553
Q ss_pred ---------CceEEeccCCc-CCC-C-C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 ---------CVEHVEGDMFV-NVP-S-G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 ---------ri~~~~gd~~~-~~p-~-~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|+|..+|+.+ ++| . . |+|+|+++|++++++...+++++++++|+| ||.+++-
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~lg 251 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFAG 251 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEEC
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEEE
Confidence 36788999998 565 3 3 999999999999999889999999999999 9988875
No 114
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.28 E-value=1.3e-11 Score=106.89 Aligned_cols=94 Identities=19% Similarity=0.173 Sum_probs=75.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-C--CCCC--CEEEeccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-N--VPSG--QAIFTKSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~--~p~~--D~i~~~~v 243 (345)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.++ +++++.+|+.+ + ++.+ |+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 346899999999999999999999999999999 78877664 68999999987 4 5543 99998865
Q ss_pred cccCChh------HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 244 LLNWSDE------QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 244 lh~~~d~------~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+..... ....+|+++++.|+| ||.+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 155 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFK 155 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCC---CcEEEEE
Confidence 4322211 124689999999999 9998887
No 115
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.27 E-value=1e-11 Score=104.39 Aligned_cols=128 Identities=9% Similarity=-0.012 Sum_probs=92.9
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCCC--CEEEecccccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPSG--QAIFTKSVLLN 246 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~~--D~i~~~~vlh~ 246 (345)
....+|||||||+|-++..++...|+.+++++|+ +.+++.++ ..++...|..+..|.+ |+|+...+||+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LHl 127 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPV 127 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHHh
Confidence 3467999999999999999999999999999999 88888776 2234447777644433 99999999999
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEEec--cCCCCCCCCchhhhhhhccchhhhhhcCCCc-cCCHHHHHHHHHHCC
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLRSK--RGLPESPEFSSINRNILTLDIVMYDLFPQAK-GRTAGEFKALAMAAG 323 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~rt~~e~~~ll~~aG 323 (345)
+ ++. ...+.+++++|+| ||.++.. + .+.... -|. +.-.+.|++.+ ...
T Consensus 128 L-~~~-~~al~~v~~~L~p---ggvfISf-ptksl~Gr~----------------------~gm~~~Y~~~~~~~~-~~~ 178 (200)
T 3fzg_A 128 L-KQQ-DVNILDFLQLFHT---QNFVISF-PIKSLSGKE----------------------KGMEENYQLWFESFT-KGW 178 (200)
T ss_dssp H-HHT-TCCHHHHHHTCEE---EEEEEEE-ECCCCC--C----------------------TTCCCCHHHHHHHHT-TTT
T ss_pred h-hhh-HHHHHHHHHHhCC---CCEEEEe-ChHHhcCCC----------------------cchhhhHHHHHHHhc-cCc
Confidence 9 433 4556699999999 8877766 4 111111 111 22356677777 666
Q ss_pred CCceEEEecCC
Q 044482 324 FGTIKVICRSY 334 (345)
Q Consensus 324 f~~~~~~~~~~ 334 (345)
+.+++....+.
T Consensus 179 ~~~~~~~~~~n 189 (200)
T 3fzg_A 179 IKILDSKVIGN 189 (200)
T ss_dssp SCEEEEEEETT
T ss_pred ceeeeeeeeCc
Confidence 77777777754
No 116
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.27 E-value=9.5e-12 Score=109.79 Aligned_cols=131 Identities=12% Similarity=0.045 Sum_probs=98.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCC----CC-CEEEe
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVP----SG-QAIFT 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p----~~-D~i~~ 240 (345)
+....+|||||||+|..+..++...|+.+++++|. +.+++.++ +++++.+|+.+ +.+ .. |+|++
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 45668999999999999999999999999999999 77777665 68999999877 432 23 99998
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHH
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAM 320 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~ 320 (345)
..+ .+ ...+++.+++.|+| ||++++. +.... . ...+++.+.++
T Consensus 148 ~~~----~~--~~~~l~~~~~~Lkp---gG~l~~~-~g~~~------~---------------------~~~~~~~~~l~ 190 (240)
T 1xdz_A 148 RAV----AR--LSVLSELCLPLVKK---NGLFVAL-KAASA------E---------------------EELNAGKKAIT 190 (240)
T ss_dssp ECC----SC--HHHHHHHHGGGEEE---EEEEEEE-ECC-C------H---------------------HHHHHHHHHHH
T ss_pred ecc----CC--HHHHHHHHHHhcCC---CCEEEEE-eCCCc------h---------------------HHHHHHHHHHH
Confidence 763 22 35899999999999 9999887 32100 0 01346778999
Q ss_pred HCCCCceEEEec--C---CceEEEEEEcC
Q 044482 321 AAGFGTIKVICR--S---YCYWVIEFYKP 344 (345)
Q Consensus 321 ~aGf~~~~~~~~--~---~~~~vi~~~k~ 344 (345)
++||+..++... + +...++.++|.
T Consensus 191 ~~g~~~~~~~~~~~~~~~~~~~l~~~~k~ 219 (240)
T 1xdz_A 191 TLGGELENIHSFKLPIEESDRNIMVIRKI 219 (240)
T ss_dssp HTTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred HcCCeEeEEEEEecCCCCCceEEEEEEec
Confidence 999998877543 3 34566666654
No 117
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.27 E-value=5.1e-12 Score=113.90 Aligned_cols=122 Identities=11% Similarity=0.058 Sum_probs=91.5
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~- 235 (345)
.+++.++ .....+|||+|||+|.++..+++. +|..+++++|+ +.+++.++ +++++.+|+.++++++
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4556666 677789999999999999999998 78899999999 77766443 5889999998866643
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|+|++ ++++. ..+|+++++.|+| ||++++. .... . ..++
T Consensus 180 fD~Vi~-----~~~~~--~~~l~~~~~~Lkp---gG~l~i~-~~~~----------------------~-------~~~~ 219 (275)
T 1yb2_A 180 YDAVIA-----DIPDP--WNHVQKIASMMKP---GSVATFY-LPNF----------------------D-------QSEK 219 (275)
T ss_dssp EEEEEE-----CCSCG--GGSHHHHHHTEEE---EEEEEEE-ESSH----------------------H-------HHHH
T ss_pred ccEEEE-----cCcCH--HHHHHHHHHHcCC---CCEEEEE-eCCH----------------------H-------HHHH
Confidence 99987 45554 4789999999999 9999998 4210 0 1345
Q ss_pred HHHHHHHCCCCceEEEe
Q 044482 315 FKALAMAAGFGTIKVIC 331 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~ 331 (345)
+.++++++||+.+++..
T Consensus 220 ~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 220 TVLSLSASGMHHLETVE 236 (275)
T ss_dssp HHHHSGGGTEEEEEEEE
T ss_pred HHHHHHHCCCeEEEEEE
Confidence 66777888888777654
No 118
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.26 E-value=4.1e-11 Score=103.66 Aligned_cols=134 Identities=10% Similarity=0.037 Sum_probs=93.9
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHh----hhCC---CceEEeccCCcC-----CCCC-CEEEecc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVI----KNAP---CVEHVEGDMFVN-----VPSG-QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i----~~a~---ri~~~~gd~~~~-----~p~~-D~i~~~~ 242 (345)
.....+|||||||+|.++..+++..++.+++++|+ |.++ +.++ ++.++.+|+.++ ++.. |+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 55667999999999999999999988779999999 6543 3333 788888998763 2233 999886
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH----HHH
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF----KAL 318 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~----~~l 318 (345)
+.+ .++...+|+++++.||| ||++++. -...+ .+ .. .+.+++ .+.
T Consensus 134 ~~~---~~~~~~~l~~~~r~Lkp---gG~l~i~-~~~~~--------------~~-----~~-----~~~~~~~~~~~~~ 182 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKE---KGEVVIM-VKARS--------------ID-----ST-----AEPEEVFKSVLKE 182 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEE---EEEEEEE-EEHHH--------------HC-----TT-----SCHHHHHHHHHHH
T ss_pred ccC---hhHHHHHHHHHHHHhCC---CCEEEEE-EecCC--------------cc-----cc-----CCHHHHHHHHHHH
Confidence 332 23445669999999999 9999888 21100 00 00 112232 123
Q ss_pred HHHCCCCceEEEecCC---ceEEEEEEc
Q 044482 319 AMAAGFGTIKVICRSY---CYWVIEFYK 343 (345)
Q Consensus 319 l~~aGf~~~~~~~~~~---~~~vi~~~k 343 (345)
++++ |++++...... .+.++.++|
T Consensus 183 l~~~-f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 183 MEGD-FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp HHTT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred HHhh-cEEeeeecCCCCCCCcEEEEEEc
Confidence 8888 99999887743 567888776
No 119
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.26 E-value=5.6e-12 Score=108.61 Aligned_cols=96 Identities=13% Similarity=0.041 Sum_probs=81.0
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC--CEEEecccccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG--QAIFTKSVLLN 246 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~ 246 (345)
....+|||||||+|.++..+++..+. +++++|+ +.+++.++ +++++.+|+.+ +++.+ |+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 45579999999999999999998765 8999999 77777654 68999999988 66643 99999999977
Q ss_pred CC-------------hhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 247 WS-------------DEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 247 ~~-------------d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
+. .++..++|+++++.|+| ||++++. +.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~-~~ 160 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISM-TS 160 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEE-ES
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEE-eC
Confidence 65 44567899999999999 9999999 54
No 120
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.26 E-value=8.3e-12 Score=107.24 Aligned_cols=87 Identities=11% Similarity=0.080 Sum_probs=72.7
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-C-CEEEeccccccC
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS-G-QAIFTKSVLLNW 247 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~-~-D~i~~~~vlh~~ 247 (345)
..+|||||||+|.++..+++.+|+.+++++|. +.+++.++ +++++.+|+.+..+. . |+|++..+ +
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~-- 142 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A-- 142 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S--
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C--
Confidence 57999999999999999999999999999998 77777655 489999999884443 3 99987543 2
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+ ...+++++++.|+| ||++++.
T Consensus 143 -~--~~~~l~~~~~~L~~---gG~l~~~ 164 (207)
T 1jsx_A 143 -S--LNDMVSWCHHLPGE---QGRFYAL 164 (207)
T ss_dssp -S--HHHHHHHHTTSEEE---EEEEEEE
T ss_pred -C--HHHHHHHHHHhcCC---CcEEEEE
Confidence 2 35789999999999 9998887
No 121
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.25 E-value=1.2e-11 Score=116.33 Aligned_cols=103 Identities=13% Similarity=0.161 Sum_probs=84.8
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------CceEEeccCCcCCCCC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------CVEHVEGDMFVNVPSG 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~~~p~~ 235 (345)
.+++.++ .....+|||+|||+|.++..+++++|..+++++|. +.+++.++ +++++.+|++++++.+
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 4566666 44458999999999999999999999999999999 77887666 3778999999977743
Q ss_pred --CEEEecccccc---CChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 --QAIFTKSVLLN---WSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 --D~i~~~~vlh~---~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|+++..+|+ .++....++|+++++.|+| ||+++|+
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv 333 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIV 333 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEE
Confidence 99999999885 4455666899999999999 9999998
No 122
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.25 E-value=1.4e-11 Score=103.86 Aligned_cols=117 Identities=20% Similarity=0.087 Sum_probs=90.8
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC--C-
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS--G- 235 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~--~- 235 (345)
+++.++ .....+|||+|||+|.++..+++.. .+++++|. +.+++.++ +++++.+|+.++++. .
T Consensus 25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (192)
T 1l3i_A 25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (192)
T ss_dssp HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence 444455 5667899999999999999999887 78999998 77776554 678999998774442 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|+|++..++|++ ..+|+++++.|+| ||++++. .... .+..++
T Consensus 102 D~v~~~~~~~~~-----~~~l~~~~~~l~~---gG~l~~~-~~~~-----------------------------~~~~~~ 143 (192)
T 1l3i_A 102 DIAVVGGSGGEL-----QEILRIIKDKLKP---GGRIIVT-AILL-----------------------------ETKFEA 143 (192)
T ss_dssp EEEEESCCTTCH-----HHHHHHHHHTEEE---EEEEEEE-ECBH-----------------------------HHHHHH
T ss_pred CEEEECCchHHH-----HHHHHHHHHhcCC---CcEEEEE-ecCc-----------------------------chHHHH
Confidence 999999887653 5789999999999 9999888 3210 014567
Q ss_pred HHHHHHCCCCce
Q 044482 316 KALAMAAGFGTI 327 (345)
Q Consensus 316 ~~ll~~aGf~~~ 327 (345)
.+++++.||.+.
T Consensus 144 ~~~l~~~g~~~~ 155 (192)
T 1l3i_A 144 MECLRDLGFDVN 155 (192)
T ss_dssp HHHHHHTTCCCE
T ss_pred HHHHHHCCCceE
Confidence 899999999543
No 123
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.24 E-value=8.2e-12 Score=116.25 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=86.0
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCCC-CE
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPSG-QA 237 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~~-D~ 237 (345)
..+++.++ .....+|||||||+|.++..+++++|+.+++++|. +.+++.++ +++++.+|+++..+.. |+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 34556664 33456899999999999999999999999999999 77787766 4678899998744444 99
Q ss_pred EEecccccc---CChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLLN---WSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh~---~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+++.++|+ ++.+...++|+++++.|+| ||+++++
T Consensus 265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~ 302 (343)
T 2pjd_A 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNS---GGELRIV 302 (343)
T ss_dssp EEECCCCCSSSHHHHHHHHHHHHHHGGGEEE---EEEEEEE
T ss_pred EEECCCcccCccCCHHHHHHHHHHHHHhCCC---CcEEEEE
Confidence 999999986 3556678999999999999 9999998
No 124
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.24 E-value=8.8e-13 Score=117.35 Aligned_cols=142 Identities=11% Similarity=0.026 Sum_probs=94.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCC----cCCC----CC-CEE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMF----VNVP----SG-QAI 238 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~----~~~p----~~-D~i 238 (345)
...+|||||||+|.++..+++++|+.+++++|+ +.+++.|+ +++++.+|+. ++++ .. |+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 456899999999999999999988899999999 88887665 4899999953 3444 23 999
Q ss_pred EeccccccCCh-------------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcC
Q 044482 239 FTKSVLLNWSD-------------EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFP 305 (345)
Q Consensus 239 ~~~~vlh~~~d-------------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 305 (345)
+++-.+|.... +....+++++++.|+| ||++.++ +.+.... ........++...
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~-~~~~~~~--------~~~l~~~g~~~~~- 211 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFV-KRIIHDS--------LQLKKRLRWYSCM- 211 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHH---HTHHHHH-HHHHHHH--------HHHGGGBSCEEEE-
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEE-HHHHHHH--------HhcccceEEEEEC-
Confidence 99866665431 1123578899999999 9998888 6543210 0000000111111
Q ss_pred CCccCCHHHHHHHHHHCCCCceEEEecC
Q 044482 306 QAKGRTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 306 ~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
.+...+.+++.++++++||+.+++....
T Consensus 212 ~~~~~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 212 LGKKCSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp ESSTTSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CCChhHHHHHHHHHHHcCCCceEEEEEe
Confidence 2344556899999999999998876663
No 125
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.23 E-value=3.4e-11 Score=106.91 Aligned_cols=123 Identities=12% Similarity=0.055 Sum_probs=97.3
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~- 235 (345)
.++..++ .....+|||+|||+|.++..+++. .|..+++++|+ +.+++.|+ +++++.+|+.+.++++
T Consensus 84 ~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 162 (255)
T 3mb5_A 84 LIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEEN 162 (255)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCS
T ss_pred HHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCC
Confidence 4556666 667789999999999999999999 88999999999 78877665 4999999999877754
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|+|++ ++++. ..+|+++++.|+| ||++++. .... . ...+
T Consensus 163 ~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~-~~~~----------------------~-------~~~~ 202 (255)
T 3mb5_A 163 VDHVIL-----DLPQP--ERVVEHAAKALKP---GGFFVAY-TPCS----------------------N-------QVMR 202 (255)
T ss_dssp EEEEEE-----CSSCG--GGGHHHHHHHEEE---EEEEEEE-ESSH----------------------H-------HHHH
T ss_pred cCEEEE-----CCCCH--HHHHHHHHHHcCC---CCEEEEE-ECCH----------------------H-------HHHH
Confidence 99987 34544 4689999999999 9999888 3210 0 1456
Q ss_pred HHHHHHHCC--CCceEEEec
Q 044482 315 FKALAMAAG--FGTIKVICR 332 (345)
Q Consensus 315 ~~~ll~~aG--f~~~~~~~~ 332 (345)
+.++++++| |..+++...
T Consensus 203 ~~~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 203 LHEKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHHHTGGGBSCCEEECC
T ss_pred HHHHHHHcCCCccccEEEEE
Confidence 778899999 988877543
No 126
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.23 E-value=7e-11 Score=103.07 Aligned_cols=139 Identities=13% Similarity=0.078 Sum_probs=96.9
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC-------CceEEeccCCcC-----CCCC-CEEEec
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP-------CVEHVEGDMFVN-----VPSG-QAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~~-----~p~~-D~i~~~ 241 (345)
.....+|||+|||+|.++..++++. |..+++++|. +.+++.+. +++++.+|+.+. .+.. |+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 5566799999999999999999885 6689999999 65554432 799999999872 1233 999865
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
.. ..+....+++++++.|+| ||++++. -.........+ ....+.+++.++ ++
T Consensus 151 ~~----~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~-------------------~~~~~~~~l~~l-~~ 202 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKR---GGYGMIA-VKSRSIDVTKE-------------------PEQVFREVEREL-SE 202 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCTTSC-------------------HHHHHHHHHHHH-HT
T ss_pred CC----CHhHHHHHHHHHHHhcCC---CCEEEEE-EecCCCCCCCC-------------------hhhhhHHHHHHH-Hh
Confidence 43 233334569999999999 9998886 22111110000 001225677777 77
Q ss_pred CCCCceEEEecCCc---eEEEEEEcC
Q 044482 322 AGFGTIKVICRSYC---YWVIEFYKP 344 (345)
Q Consensus 322 aGf~~~~~~~~~~~---~~vi~~~k~ 344 (345)
+ |++++...+... +.++.++|.
T Consensus 203 ~-f~~~~~~~~~~~~~~~~~~~~~~~ 227 (227)
T 1g8a_A 203 Y-FEVIERLNLEPYEKDHALFVVRKT 227 (227)
T ss_dssp T-SEEEEEEECTTTSSSEEEEEEECC
T ss_pred h-ceeeeEeccCcccCCCEEEEEEeC
Confidence 8 999998887644 778887763
No 127
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.23 E-value=1.5e-11 Score=109.67 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=96.2
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCC-C-CEEEecccccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPS-G-QAIFTKSVLLN 246 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~-~-D~i~~~~vlh~ 246 (345)
....+|||+|||+|.++..+++..+ +++++|+ |.+++.++ .+++..+|+.+.++. . |+|+++...|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 3557999999999999999998765 8999999 88887766 278999998875543 3 9999865543
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCc
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGT 326 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~ 326 (345)
....+++++++.|+| ||++++. +... .+.+++.++++++||++
T Consensus 196 ----~~~~~l~~~~~~Lkp---gG~lils-~~~~-----------------------------~~~~~v~~~l~~~Gf~~ 238 (254)
T 2nxc_A 196 ----LHAALAPRYREALVP---GGRALLT-GILK-----------------------------DRAPLVREAMAGAGFRP 238 (254)
T ss_dssp ----HHHHHHHHHHHHEEE---EEEEEEE-EEEG-----------------------------GGHHHHHHHHHHTTCEE
T ss_pred ----HHHHHHHHHHHHcCC---CCEEEEE-eecc-----------------------------CCHHHHHHHHHHCCCEE
Confidence 346899999999999 9999987 4321 02678899999999999
Q ss_pred eEEEecCCceEEEEEE
Q 044482 327 IKVICRSYCYWVIEFY 342 (345)
Q Consensus 327 ~~~~~~~~~~~vi~~~ 342 (345)
+++........ +.++
T Consensus 239 ~~~~~~~~W~~-l~~~ 253 (254)
T 2nxc_A 239 LEEAAEGEWVL-LAYG 253 (254)
T ss_dssp EEEEEETTEEE-EEEE
T ss_pred EEEeccCCeEE-EEEE
Confidence 98877655433 3444
No 128
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.21 E-value=2.3e-11 Score=101.85 Aligned_cols=111 Identities=12% Similarity=-0.035 Sum_probs=85.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCCc-CC---CCC--CEEEecccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMFV-NV---PSG--QAIFTKSVL 244 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~-~~---p~~--D~i~~~~vl 244 (345)
.....+|||||||. +.+|. +.|++.++ +++++.+|+.+ +. +++ |+|++.+++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 55678999999996 23887 78888766 58999999987 55 543 999999999
Q ss_pred ccC-ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCC
Q 044482 245 LNW-SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAG 323 (345)
Q Consensus 245 h~~-~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aG 323 (345)
|++ ++. .++|+++++.||| ||++++. +........ ....++.++|.++|+++|
T Consensus 74 ~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~-~~~~~~~~~--------------------~~~~~~~~~~~~~l~~aG 127 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRP---GGCLFLK-EPVETAVDN--------------------NSKVKTASKLCSALTLSG 127 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEE---EEEEEEE-EEEESSSCS--------------------SSSSCCHHHHHHHHHHTT
T ss_pred hhcccCH--HHHHHHHHHHCCC---CEEEEEE-ccccccccc--------------------ccccCCHHHHHHHHHHCC
Confidence 999 665 5899999999999 9999997 554221100 122367899999999999
Q ss_pred CCceEEEe
Q 044482 324 FGTIKVIC 331 (345)
Q Consensus 324 f~~~~~~~ 331 (345)
| +. +..
T Consensus 128 f-i~-~~~ 133 (176)
T 2ld4_A 128 L-VE-VKE 133 (176)
T ss_dssp C-EE-EEE
T ss_pred C-cE-eec
Confidence 9 43 543
No 129
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.21 E-value=6.8e-11 Score=101.76 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=90.9
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC---CC
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP---SG 235 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p---~~ 235 (345)
+++.++ .....+|||||||+|.++..+++. ..+++++|+ +.+++.|+ +++++.+|+.+.++ ..
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 445555 666789999999999999999988 779999999 88877654 58999999988433 23
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|+|++...+ + .. +++++++.|+| ||++++. .... .+..++
T Consensus 124 D~v~~~~~~----~--~~-~l~~~~~~Lkp---gG~lv~~-~~~~-----------------------------~~~~~~ 163 (204)
T 3njr_A 124 EAVFIGGGG----S--QA-LYDRLWEWLAP---GTRIVAN-AVTL-----------------------------ESETLL 163 (204)
T ss_dssp SEEEECSCC----C--HH-HHHHHHHHSCT---TCEEEEE-ECSH-----------------------------HHHHHH
T ss_pred CEEEECCcc----c--HH-HHHHHHHhcCC---CcEEEEE-ecCc-----------------------------ccHHHH
Confidence 999987744 2 23 89999999999 9999888 3210 024567
Q ss_pred HHHHHHCCCCceEEE
Q 044482 316 KALAMAAGFGTIKVI 330 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~ 330 (345)
.+++++.|+++.++.
T Consensus 164 ~~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 164 TQLHARHGGQLLRID 178 (204)
T ss_dssp HHHHHHHCSEEEEEE
T ss_pred HHHHHhCCCcEEEEE
Confidence 888999998877753
No 130
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.20 E-value=3.1e-11 Score=102.84 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=77.5
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-C-CCC-C-CEEEe
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-N-VPS-G-QAIFT 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~-~p~-~-D~i~~ 240 (345)
.....+|||+|||+|.++..+++++ |..+++++|+ +.+++.++ +++++.+|+.+ + ..+ . |+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4456799999999999999999986 6789999999 77877664 68999999876 2 333 3 99998
Q ss_pred ccccc-------cCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 241 KSVLL-------NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 241 ~~vlh-------~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
...+. ....+...++++++++.|+| ||++++. ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~-~~ 140 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVV-IY 140 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEE-EC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEE-Ec
Confidence 86551 11233456799999999999 9999998 54
No 131
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.20 E-value=2.9e-11 Score=102.01 Aligned_cols=140 Identities=11% Similarity=0.054 Sum_probs=92.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc--CCCC-C-CEEEec-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV--NVPS-G-QAIFTK- 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~--~~p~-~-D~i~~~- 241 (345)
.....+|||||||+|.++..++++ ..+++++|+ |.+++.|+ +++++.+|+.. ..++ . |+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 345679999999999999999988 678999999 88888765 58888877655 2343 3 999876
Q ss_pred cccccC------ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 242 SVLLNW------SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 242 ~vlh~~------~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
..+++- ..+....+|+++++.|+| ||++++. .....+.... . .....+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~----~-----------------~~~~~~~ 152 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIM-IYYGHDGGDM----E-----------------KDAVLEY 152 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEE---EEEEEEE-EC------CH----H-----------------HHHHHHH
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEE-EeCCCCCCHH----H-----------------HHHHHHH
Confidence 333320 234557889999999999 9999988 5422111100 0 0113445
Q ss_pred HHHHHHCCCCceEEEecCC---ceEEEEEEc
Q 044482 316 KALAMAAGFGTIKVICRSY---CYWVIEFYK 343 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~~~---~~~vi~~~k 343 (345)
.+.+...+|.+.+...... ...++...|
T Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 183 (185)
T 3mti_A 153 VIGLDQRVFTAMLYQPLNQINTPPFLVMLEK 183 (185)
T ss_dssp HHHSCTTTEEEEEEEESSCSSCCCEEEEEEE
T ss_pred HHhCCCceEEEEEehhhccCCCCCeEEEEEe
Confidence 5566667788877766632 234554444
No 132
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.20 E-value=1.2e-10 Score=101.21 Aligned_cols=126 Identities=13% Similarity=0.039 Sum_probs=99.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC---CCEEEecccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS---GQAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~---~D~i~~~~vl 244 (345)
...+|+|||||+|.++..+++..|..+++.+|+ |..++.|+ ++++..+|.+++++. .|+|++..+-
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~G 94 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGMG 94 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCCC
Confidence 457999999999999999999999999999999 77777665 689999999987662 3999887653
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCC
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf 324 (345)
.+....||..+.+.|+| +|++++. -. . .....+++|.+.||
T Consensus 95 ----g~~i~~Il~~~~~~L~~---~~~lVlq-~~----~---------------------------~~~~vr~~L~~~Gf 135 (225)
T 3kr9_A 95 ----GRLIARILEEGLGKLAN---VERLILQ-PN----N---------------------------REDDLRIWLQDHGF 135 (225)
T ss_dssp ----HHHHHHHHHHTGGGCTT---CCEEEEE-ES----S---------------------------CHHHHHHHHHHTTE
T ss_pred ----hHHHHHHHHHHHHHhCC---CCEEEEE-CC----C---------------------------CHHHHHHHHHHCCC
Confidence 34457899999999999 9988777 11 0 15667899999999
Q ss_pred CceEEEec--CC-ceEEEEEEc
Q 044482 325 GTIKVICR--SY-CYWVIEFYK 343 (345)
Q Consensus 325 ~~~~~~~~--~~-~~~vi~~~k 343 (345)
.+++..-+ .+ .+.+|.+.+
T Consensus 136 ~i~~e~lv~e~~~~Yeii~~~~ 157 (225)
T 3kr9_A 136 QIVAESILEEAGKFYEILVVEA 157 (225)
T ss_dssp EEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEEe
Confidence 99876533 23 466777764
No 133
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.20 E-value=1.1e-10 Score=105.40 Aligned_cols=91 Identities=11% Similarity=0.133 Sum_probs=76.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-CC-CEEEecccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-SG-QAIFTKSVL 244 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-~~-D~i~~~~vl 244 (345)
.....+|||||||+|.++..++.+.++.+++++|+ |++++.|+ +++++.+|+.+ +| .. |+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~~a~- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMVAAL- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEECTT-
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEECCC-
Confidence 66789999999999988777777778999999999 88988776 69999999987 33 33 99998655
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEec
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSK 277 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d 277 (345)
.++ ..++++++++.|+| ||++++. +
T Consensus 198 --~~d--~~~~l~el~r~LkP---GG~Lvv~-~ 222 (298)
T 3fpf_A 198 --AEP--KRRVFRNIHRYVDT---ETRIIYR-T 222 (298)
T ss_dssp --CSC--HHHHHHHHHHHCCT---TCEEEEE-E
T ss_pred --ccC--HHHHHHHHHHHcCC---CcEEEEE-c
Confidence 233 35899999999999 9999998 5
No 134
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.19 E-value=3e-11 Score=110.55 Aligned_cols=137 Identities=11% Similarity=0.046 Sum_probs=96.2
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCc-CC--CC-C-CEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFV-NV--PS-G-QAI 238 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~-~~--p~-~-D~i 238 (345)
.+..+|||||||+|.++..+++..|..+++++|+ |.+++.++ |++++.+|+.+ .. +. . |+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 3557999999999999999998877889999999 77776543 68999999987 22 33 3 999
Q ss_pred EeccccccCChhHH--HHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHH
Q 044482 239 FTKSVLLNWSDEQC--LKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 239 ~~~~vlh~~~d~~~--~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~ 316 (345)
++....+.+++... ..++++++++|+| ||.+++. .. .+ . .+ .....++.
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~-~~----~~---~-------~~-----------~~~~~~~~ 224 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQ-GE----SI---W-------LD-----------LELIEKMS 224 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEE---EEEEEEE-EC----CT---T-------TC-----------HHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEe-cC----Cc---c-------cc-----------hHHHHHHH
Confidence 99877766654433 5789999999999 9998887 21 10 0 00 01356788
Q ss_pred HHHHHCCCCceEEEec--C----CceEEEEEEc
Q 044482 317 ALAMAAGFGTIKVICR--S----YCYWVIEFYK 343 (345)
Q Consensus 317 ~ll~~aGf~~~~~~~~--~----~~~~vi~~~k 343 (345)
+.++++||..+++... + +..+.+.+.|
T Consensus 225 ~~l~~~GF~~v~~~~~~vP~yp~g~w~f~~as~ 257 (304)
T 3bwc_A 225 RFIRETGFASVQYALMHVPTYPCGSIGTLVCSK 257 (304)
T ss_dssp HHHHHHTCSEEEEEECCCTTSTTSCCEEEEEES
T ss_pred HHHHhCCCCcEEEEEeecccccCcceEEEEEeC
Confidence 9999999998887654 2 2334555554
No 135
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.19 E-value=1.6e-11 Score=106.96 Aligned_cols=94 Identities=9% Similarity=0.050 Sum_probs=74.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcC----CCCC--CEEEecc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVN----VPSG--QAIFTKS 242 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~----~p~~--D~i~~~~ 242 (345)
...+|||||||+|.++..+++++|+.+++++|+ +.+++.++ +++++.+|+.+. ++++ |.|++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 457899999999999999999999999999999 77776654 799999998762 5554 8888774
Q ss_pred ccccCChhHH------HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VLLNWSDEQC------LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh~~~d~~~------~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.......... ..+++++++.|+| ||.+++.
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~ 149 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMA 149 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEE
Confidence 4432222211 2489999999999 9999888
No 136
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.19 E-value=3.8e-11 Score=104.05 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=73.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-C--CCCC--CEEEeccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-N--VPSG--QAIFTKSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~--~p~~--D~i~~~~v 243 (345)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+ +++++.+|+.+ + ++++ |.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 346899999999999999999999999999999 77777654 68999999987 3 5544 88876543
Q ss_pred cccCChhH------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 244 LLNWSDEQ------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 244 lh~~~d~~------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..+..... ...+|+++++.|+| ||.|++.
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~ 152 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFK 152 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCC---CCEEEEE
Confidence 32111110 24789999999999 9999887
No 137
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.18 E-value=1.6e-10 Score=103.11 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=99.7
Q ss_pred cc-cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-C--CCC-C-CEEE
Q 044482 177 FK-ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-N--VPS-G-QAIF 239 (345)
Q Consensus 177 ~~-~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~--~p~-~-D~i~ 239 (345)
.. ...+|||+|||+|.++..++++.+. +++++|+ +.+++.|+ |++++.+|+.+ . ++. . |+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 6789999999999999999999876 9999999 77877665 59999999988 3 333 3 9999
Q ss_pred eccccccC------------------ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhh
Q 044482 240 TKSVLLNW------------------SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMY 301 (345)
Q Consensus 240 ~~~vlh~~------------------~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~ 301 (345)
++-.++.. .......+++.+.+.|+| ||+++++ - +.
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~---~~------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFV-H---RP------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEE-E---CT-------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEE-E---cH-------------------
Confidence 96444322 113346799999999999 9999887 1 10
Q ss_pred hhcCCCccCCHHHHHHHHHHCCCCceEEEecC------CceEEEEEEcC
Q 044482 302 DLFPQAKGRTAGEFKALAMAAGFGTIKVICRS------YCYWVIEFYKP 344 (345)
Q Consensus 302 ~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~------~~~~vi~~~k~ 344 (345)
....++.+++++.||...++..+. ....+++++|.
T Consensus 179 --------~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k~ 219 (259)
T 3lpm_A 179 --------ERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIKD 219 (259)
T ss_dssp --------TTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEET
T ss_pred --------HHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEeC
Confidence 024567888999999988876652 23577888764
No 138
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.17 E-value=3.3e-11 Score=107.04 Aligned_cols=130 Identities=10% Similarity=-0.014 Sum_probs=97.9
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCC----CC-CEEEec
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVP----SG-QAIFTK 241 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p----~~-D~i~~~ 241 (345)
....+|||||||+|..+..++..+|+.+++++|. +.+++.++ +++++.+|+.+ +.. .. |+|+++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4567999999999999999999999999999998 77777665 68999999877 331 23 999987
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
.+- + ...+++.+.+.|+| ||++++. ..... . -...++.+.+++
T Consensus 159 a~~----~--~~~ll~~~~~~Lkp---gG~l~~~-~g~~~------~---------------------~e~~~~~~~l~~ 201 (249)
T 3g89_A 159 AVA----P--LCVLSELLLPFLEV---GGAAVAM-KGPRV------E---------------------EELAPLPPALER 201 (249)
T ss_dssp SSC----C--HHHHHHHHGGGEEE---EEEEEEE-ECSCC------H---------------------HHHTTHHHHHHH
T ss_pred CcC----C--HHHHHHHHHHHcCC---CeEEEEE-eCCCc------H---------------------HHHHHHHHHHHH
Confidence 642 2 25789999999999 9999988 32100 0 002346778889
Q ss_pred CCCCceEEEec--C---CceEEEEEEcC
Q 044482 322 AGFGTIKVICR--S---YCYWVIEFYKP 344 (345)
Q Consensus 322 aGf~~~~~~~~--~---~~~~vi~~~k~ 344 (345)
.||++.++... + ....++...|.
T Consensus 202 ~G~~~~~~~~~~~p~~~~~R~l~~~~k~ 229 (249)
T 3g89_A 202 LGGRLGEVLALQLPLSGEARHLVVLEKT 229 (249)
T ss_dssp HTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred cCCeEEEEEEeeCCCCCCcEEEEEEEeC
Confidence 99999888655 2 23567777664
No 139
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.16 E-value=1.9e-10 Score=100.21 Aligned_cols=126 Identities=13% Similarity=0.002 Sum_probs=100.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-C--CCEEEecccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-S--GQAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-~--~D~i~~~~vl 244 (345)
...+|+|||||+|.++..+++..|..+++.+|+ |..++.|+ ++++..+|.++.++ . .|+|++.++.
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmG 100 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMG 100 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCCc
Confidence 457999999999999999999999889999999 77777766 69999999999554 2 3999887664
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCC
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf 324 (345)
.+....||....+.|++ +|++++. -. . ..+++++||.+.||
T Consensus 101 ----g~lI~~IL~~~~~~l~~---~~~lIlq-p~-------------------------~------~~~~lr~~L~~~Gf 141 (230)
T 3lec_A 101 ----GRLIADILNNDIDKLQH---VKTLVLQ-PN-------------------------N------REDDLRKWLAANDF 141 (230)
T ss_dssp ----HHHHHHHHHHTGGGGTT---CCEEEEE-ES-------------------------S------CHHHHHHHHHHTTE
T ss_pred ----hHHHHHHHHHHHHHhCc---CCEEEEE-CC-------------------------C------ChHHHHHHHHHCCC
Confidence 34567899999999999 9988887 10 0 15678999999999
Q ss_pred CceEEEec---CCceEEEEEEc
Q 044482 325 GTIKVICR---SYCYWVIEFYK 343 (345)
Q Consensus 325 ~~~~~~~~---~~~~~vi~~~k 343 (345)
.+++..-+ .-.+.+|.+.+
T Consensus 142 ~i~~E~lv~e~~~~Yeii~~~~ 163 (230)
T 3lec_A 142 EIVAEDILTENDKRYEILVVKH 163 (230)
T ss_dssp EEEEEEEEEC--CEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEEe
Confidence 99886543 23567887765
No 140
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.16 E-value=1.1e-10 Score=103.43 Aligned_cols=106 Identities=16% Similarity=0.133 Sum_probs=83.6
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHH--CCCCeEEEeeh-hhHhhhCC-----C--------------------
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNT--YPQITGINFDL-PYVIKNAP-----C-------------------- 220 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~--~p~~~~~~~Dl-p~~i~~a~-----r-------------------- 220 (345)
.+++.+. -....+|||+|||+|.++..+++. +|..+++++|+ +.+++.|+ .
T Consensus 42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 42 RALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp HHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 3444443 234579999999999999999998 78889999999 88877665 2
Q ss_pred -------------ce-------------EEeccCCcCC------CC-C-CEEEeccccccCCh-------hHHHHHHHHH
Q 044482 221 -------------VE-------------HVEGDMFVNV------PS-G-QAIFTKSVLLNWSD-------EQCLKILKNC 259 (345)
Q Consensus 221 -------------i~-------------~~~gd~~~~~------p~-~-D~i~~~~vlh~~~d-------~~~~~iL~~~ 259 (345)
++ ++.+|++++. +. . |+|+++..+++..+ +....+++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 56 9999999854 43 4 99999877665543 5667899999
Q ss_pred HhhCCCCCCCcEEEEEeccC
Q 044482 260 YDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 260 ~~aL~p~~~gG~lli~~d~~ 279 (345)
++.|+| ||+++++ +..
T Consensus 201 ~~~Lkp---gG~l~~~-~~~ 216 (250)
T 1o9g_A 201 ASALPA---HAVIAVT-DRS 216 (250)
T ss_dssp HHHSCT---TCEEEEE-ESS
T ss_pred HHhcCC---CcEEEEe-Ccc
Confidence 999999 9999988 544
No 141
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.16 E-value=9.4e-11 Score=98.08 Aligned_cols=117 Identities=14% Similarity=0.038 Sum_probs=89.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-C-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS-G-Q 236 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~-~-D 236 (345)
.+++.++ .....+|||+|||+|.++..+++ +..+++++|. +.+++.++ +++++.+|+.+++++ . |
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 3445555 55667999999999999999998 7889999998 77777655 689999999886653 3 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHH
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~ 316 (345)
+|++..+ .....+++++++. | ||++++. +... . +..++.
T Consensus 103 ~i~~~~~------~~~~~~l~~~~~~--~---gG~l~~~-~~~~----------------------~-------~~~~~~ 141 (183)
T 2yxd_A 103 KAFIGGT------KNIEKIIEILDKK--K---INHIVAN-TIVL----------------------E-------NAAKII 141 (183)
T ss_dssp EEEECSC------SCHHHHHHHHHHT--T---CCEEEEE-ESCH----------------------H-------HHHHHH
T ss_pred EEEECCc------ccHHHHHHHHhhC--C---CCEEEEE-eccc----------------------c-------cHHHHH
Confidence 9999988 2235788888888 8 9999998 4210 0 145678
Q ss_pred HHHHHCCCCceEE
Q 044482 317 ALAMAAGFGTIKV 329 (345)
Q Consensus 317 ~ll~~aGf~~~~~ 329 (345)
++++++||.+..+
T Consensus 142 ~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 142 NEFESRGYNVDAV 154 (183)
T ss_dssp HHHHHTTCEEEEE
T ss_pred HHHHHcCCeEEEE
Confidence 8999999866544
No 142
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.15 E-value=4.4e-11 Score=111.52 Aligned_cols=103 Identities=14% Similarity=0.080 Sum_probs=83.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCC-
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSG- 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~- 235 (345)
..+++.+. .....+|||||||+|.++..++++ +..+++++|..++++.++ +++++.+|+.+ +.|..
T Consensus 40 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~ 117 (348)
T 2y1w_A 40 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 117 (348)
T ss_dssp HHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence 34556655 456679999999999999998875 567999999965665443 68999999988 66654
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++..+++++..+.....+.++++.|+| ||++++.
T Consensus 118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~ 154 (348)
T 2y1w_A 118 DIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPT 154 (348)
T ss_dssp EEEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEESC
T ss_pred eEEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEEe
Confidence 999999999999888778889999999999 9988754
No 143
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.15 E-value=1.1e-11 Score=108.38 Aligned_cols=110 Identities=9% Similarity=0.032 Sum_probs=84.1
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc--CCC-CC--CEEEeccccccC
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV--NVP-SG--QAIFTKSVLLNW 247 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~--~~p-~~--D~i~~~~vlh~~ 247 (345)
....+|||||||+|.++..++++ ..+++++|+ +.+++.++ +++++.+|+.+ +++ ++ |+|+++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 34579999999999999999998 568999999 88888776 79999999976 444 33 9998871
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCce
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTI 327 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~ 327 (345)
+...+|+++++.|+| ||+++.. .. ..+.+++.++++++||+.+
T Consensus 120 ---~~~~~l~~~~~~Lkp---gG~l~~~-~~------------------------------~~~~~~~~~~l~~~Gf~~~ 162 (226)
T 3m33_A 120 ---GPTSVILRLPELAAP---DAHFLYV-GP------------------------------RLNVPEVPERLAAVGWDIV 162 (226)
T ss_dssp ---CCSGGGGGHHHHEEE---EEEEEEE-ES------------------------------SSCCTHHHHHHHHTTCEEE
T ss_pred ---CHHHHHHHHHHHcCC---CcEEEEe-CC------------------------------cCCHHHHHHHHHHCCCeEE
Confidence 224679999999999 9988833 11 0123457778888888776
Q ss_pred EEEe
Q 044482 328 KVIC 331 (345)
Q Consensus 328 ~~~~ 331 (345)
++..
T Consensus 163 ~~~~ 166 (226)
T 3m33_A 163 AEDH 166 (226)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6543
No 144
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.14 E-value=5.5e-11 Score=115.32 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=86.1
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~ 235 (345)
...+++.++ .....+|||||||+|.++..+++ .|..+++++|+.++++.|+ +++++.+|+.+ ++|..
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 445666665 55567999999999999998887 6778999999965766554 69999999998 66655
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++..++|++.+++....+.++++.|+| ||++++.
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~~ 262 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPT 262 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEESC
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 999999898999888888899999999999 9988753
No 145
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.14 E-value=3.4e-10 Score=99.13 Aligned_cols=140 Identities=13% Similarity=0.056 Sum_probs=94.9
Q ss_pred cccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHh----hhCC---CceEEeccCCcCC-----CCC-CEEEec
Q 044482 177 FKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVI----KNAP---CVEHVEGDMFVNV-----PSG-QAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i----~~a~---ri~~~~gd~~~~~-----p~~-D~i~~~ 241 (345)
+....+|||+|||+|.++..+++. .|+.+++++|+ |.++ +.++ ++.++.+|+..+. +.. |+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 567789999999999999999987 56889999999 6553 3332 7999999987632 223 999876
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
-.. .++...+++.+++.|+| ||++++. -..... |.. . ...+ ..++..+.|++
T Consensus 154 ~a~----~~~~~il~~~~~~~Lkp---GG~lvis-ik~~~~--------------d~t---~--~~~e-~~~~~~~~L~~ 205 (232)
T 3id6_C 154 IAQ----PDQTDIAIYNAKFFLKV---NGDMLLV-IKARSI--------------DVT---K--DPKE-IYKTEVEKLEN 205 (232)
T ss_dssp CCC----TTHHHHHHHHHHHHEEE---EEEEEEE-EC------------------------C--CSSS-STTHHHHHHHH
T ss_pred CCC----hhHHHHHHHHHHHhCCC---CeEEEEE-EccCCc--------------ccC---C--CHHH-HHHHHHHHHHH
Confidence 433 23333455666779999 9999887 321110 100 0 1111 12345567788
Q ss_pred CCCCceEEEecCC---ceEEEEEEcC
Q 044482 322 AGFGTIKVICRSY---CYWVIEFYKP 344 (345)
Q Consensus 322 aGf~~~~~~~~~~---~~~vi~~~k~ 344 (345)
+||++++...+.+ .+.++.++++
T Consensus 206 ~gf~~~~~~~l~p~~~~h~~v~~~~~ 231 (232)
T 3id6_C 206 SNFETIQIINLDPYDKDHAIVLSKYK 231 (232)
T ss_dssp TTEEEEEEEECTTTCSSCEEEEEEEC
T ss_pred CCCEEEEEeccCCCcCceEEEEEEeC
Confidence 9999999988843 4888888764
No 146
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.13 E-value=2.9e-11 Score=106.27 Aligned_cols=154 Identities=15% Similarity=0.125 Sum_probs=90.3
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----C--------ceEEe-ccCCcCCCC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----C--------VEHVE-GDMFVNVPS 234 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----r--------i~~~~-gd~~~~~p~ 234 (345)
.+++.++.-....+|||||||+|.++..++++ +..+++++|+ +.+++.+. + +.+.. .|+..+.+
T Consensus 27 ~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 104 (232)
T 3opn_A 27 KALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRP- 104 (232)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCC-
T ss_pred HHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCC-
Confidence 45555551223468999999999999999987 3348999999 77776543 2 22222 22222112
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCch-hhhhhhccchhhhhhcCCCccCCHH
Q 044482 235 GQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSS-INRNILTLDIVMYDLFPQAKGRTAG 313 (345)
Q Consensus 235 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~rt~~ 313 (345)
|.+.+..++.++ .++|++++++|+| ||++++. - .+....... ........|.. ....+.+
T Consensus 105 -d~~~~D~v~~~l-----~~~l~~i~rvLkp---gG~lv~~-~--~p~~e~~~~~~~~~G~~~d~~-------~~~~~~~ 165 (232)
T 3opn_A 105 -SFTSIDVSFISL-----DLILPPLYEILEK---NGEVAAL-I--KPQFEAGREQVGKNGIIRDPK-------VHQMTIE 165 (232)
T ss_dssp -SEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEE-E--CHHHHSCHHHHC-CCCCCCHH-------HHHHHHH
T ss_pred -CEEEEEEEhhhH-----HHHHHHHHHhccC---CCEEEEE-E--CcccccCHHHhCcCCeecCcc-------hhHHHHH
Confidence 333333333333 4689999999999 9999887 2 110000000 00000000100 0123678
Q ss_pred HHHHHHHHCCCCceEEEecCC------ceEEEEEEc
Q 044482 314 EFKALAMAAGFGTIKVICRSY------CYWVIEFYK 343 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~~~------~~~vi~~~k 343 (345)
++.++++++||++..+...+- ...++-++|
T Consensus 166 ~l~~~l~~aGf~v~~~~~~pi~g~~gn~e~l~~~~~ 201 (232)
T 3opn_A 166 KVLKTATQLGFSVKGLTFSPIKGGAGNVEFLVHLLK 201 (232)
T ss_dssp HHHHHHHHHTEEEEEEEECSSCBTTTBCCEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEEEccCCCCCCCHHHHHHHhh
Confidence 999999999999988865541 235555555
No 147
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.12 E-value=2.6e-10 Score=108.60 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=83.3
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC-------C-----------CceEEeccC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA-------P-----------CVEHVEGDM 228 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a-------~-----------ri~~~~gd~ 228 (345)
..+++.++ .....+|||||||+|.++..+++.+|..+++++|+ +.+++.| + +++++.+|.
T Consensus 232 ~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 232 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 44556665 66778999999999999999999988889999998 6665554 2 577888754
Q ss_pred Cc-C--C---C-CCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCC
Q 044482 229 FV-N--V---P-SGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPES 283 (345)
Q Consensus 229 ~~-~--~---p-~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~ 283 (345)
+. + + . ..|+|+++++++ . ++....|+++.+.|+| ||++++. +.+.+..
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKp---GG~lVi~-d~f~p~~ 365 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKV---GCKIISL-KSLRSLT 365 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCT---TCEEEES-SCSSCTT
T ss_pred cccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCC---CeEEEEe-eccCCcc
Confidence 43 2 2 1 239999987773 2 3446789999999999 9999999 8887655
No 148
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.12 E-value=2.5e-10 Score=94.67 Aligned_cols=103 Identities=20% Similarity=0.151 Sum_probs=81.5
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeehhhHhhhCCCceEEeccCCc-C--------CCC-C-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDLPYVIKNAPCVEHVEGDMFV-N--------VPS-G-Q 236 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~ri~~~~gd~~~-~--------~p~-~-D 236 (345)
.+++.+.......+|||+|||+|.++..+++.+ |+.+++++|+.++++ ..+++++.+|+.+ + ++. . |
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP-IVGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC-CTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc-cCcEEEEEcccccchhhhhhhccCCCCcee
Confidence 445554423456799999999999999999995 778999999955433 3589999999988 4 564 3 9
Q ss_pred EEEeccccccCChhH---------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLLNWSDEQ---------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~---------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|++...+|...+.. ...+|+++++.|+| ||++++.
T Consensus 91 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~ 135 (180)
T 1ej0_A 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVK 135 (180)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred EEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEE
Confidence 999999988766541 15889999999999 9999987
No 149
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.11 E-value=5.3e-11 Score=106.17 Aligned_cols=91 Identities=15% Similarity=0.136 Sum_probs=75.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-C--ceEEeccCCc-CCCCC--CEEEeccccccCChhH
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-C--VEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQ 251 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-r--i~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~ 251 (345)
...+|||||||+|.++..++++ ..+++++|+ +.+++.++ + -.++.+|+.+ +++++ |+|++..+++|+.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 5579999999999999999987 468999999 88888777 2 2488899887 66644 999999877776443
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 252 CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 252 ~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
...+|+++++.|+| ||++++.
T Consensus 131 ~~~~l~~~~~~Lkp---gG~l~~~ 151 (260)
T 2avn_A 131 KDKAFSEIRRVLVP---DGLLIAT 151 (260)
T ss_dssp HHHHHHHHHHHEEE---EEEEEEE
T ss_pred HHHHHHHHHHHcCC---CeEEEEE
Confidence 57899999999999 9999887
No 150
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.10 E-value=2e-10 Score=99.77 Aligned_cols=95 Identities=7% Similarity=-0.036 Sum_probs=75.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-------C-CC
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-------S-GQ 236 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-------~-~D 236 (345)
.....+|||||||+|..+..+++++| +.+++++|+ +.+++.++ +++++.+|+.+.++ . -|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 44567999999999999999999998 789999999 77777654 59999999876322 2 29
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
+|++... .+....+|+++.+.|+| ||.+++. +...
T Consensus 136 ~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~-~~~~ 170 (223)
T 3duw_A 136 FIFIDAD-----KQNNPAYFEWALKLSRP---GTVIIGD-NVVR 170 (223)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTCCT---TCEEEEE-SCSG
T ss_pred EEEEcCC-----cHHHHHHHHHHHHhcCC---CcEEEEe-CCCc
Confidence 9987654 33446889999999999 9977776 6544
No 151
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.10 E-value=4.7e-10 Score=98.56 Aligned_cols=127 Identities=10% Similarity=0.055 Sum_probs=99.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-C--CCEEEecccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-S--GQAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-~--~D~i~~~~vl 244 (345)
+..+|+|||||+|.++..+++..|..+++++|+ |..++.|+ +|++..+|.++.++ . .|+|++.++.
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmG 100 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMG 100 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCCc
Confidence 457999999999999999999999889999999 77777666 69999999999554 2 3999886554
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCC
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf 324 (345)
.+....||....+.|++ ++++++. -. . ....++++|.+.||
T Consensus 101 ----g~lI~~IL~~~~~~L~~---~~~lIlq-~~-------------------------~------~~~~lr~~L~~~Gf 141 (244)
T 3gnl_A 101 ----GTLIRTILEEGAAKLAG---VTKLILQ-PN-------------------------I------AAWQLREWSEQNNW 141 (244)
T ss_dssp ----HHHHHHHHHHTGGGGTT---CCEEEEE-ES-------------------------S------CHHHHHHHHHHHTE
T ss_pred ----hHHHHHHHHHHHHHhCC---CCEEEEE-cC-------------------------C------ChHHHHHHHHHCCC
Confidence 34567899999999999 8888888 10 0 15668999999999
Q ss_pred CceEEEec---CCceEEEEEEcC
Q 044482 325 GTIKVICR---SYCYWVIEFYKP 344 (345)
Q Consensus 325 ~~~~~~~~---~~~~~vi~~~k~ 344 (345)
.+++..-+ .-.+.+|.+.+.
T Consensus 142 ~i~~E~lv~e~~k~Yeii~~~~~ 164 (244)
T 3gnl_A 142 LITSEAILREDNKVYEIMVLAPS 164 (244)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEEEECCEEEEEEEEEeC
Confidence 98765433 235677777653
No 152
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.10 E-value=9.1e-11 Score=103.07 Aligned_cols=130 Identities=12% Similarity=-0.001 Sum_probs=99.0
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCC-C-CCEEEecccccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVP-S-GQAIFTKSVLLN 246 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p-~-~D~i~~~~vlh~ 246 (345)
....+|||||||.|-++..++..+|..+++++|+ +.+++.++ +.++...|+....| . +|++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 3467999999999999999999999999999999 78888766 67889999998545 3 399999999999
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEEecc--CCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCC
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLRSKR--GLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf 324 (345)
+.+++....+ ++.++|+| +|.++.. +. +...+ -.|-... .++|++.+.+.|.
T Consensus 211 Le~q~kg~g~-~ll~aL~~---~~vvVSf-p~ksl~Grs--------------~gm~~~Y-------~~~~e~~~~~~g~ 264 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNS---PNIVVTF-PTKSLGQRS--------------KGMFQNY-------SQSFESQARERSC 264 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSC---SEEEEEE-ECC---------------------CHHHHH-------HHHHHHHHHHHTC
T ss_pred hhhhhhHHHH-HHHHHhCC---CCEEEec-cchhhcCCC--------------cchhhHH-------HHHHHHHHHhcCC
Confidence 9988776777 89999999 7766666 33 11111 1121222 6789999999998
Q ss_pred CceEEEecCC
Q 044482 325 GTIKVICRSY 334 (345)
Q Consensus 325 ~~~~~~~~~~ 334 (345)
. ++...+++
T Consensus 265 ~-~~~~~~~n 273 (281)
T 3lcv_B 265 R-IQRLEIGN 273 (281)
T ss_dssp C-EEEEEETT
T ss_pred c-eeeeeecC
Confidence 4 44444543
No 153
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.10 E-value=1.5e-10 Score=104.29 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=79.7
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC-
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS- 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~- 234 (345)
..++..++ .....+|||+|||+|.++..++++ .|..+++++|. +.+++.++ +++++.+|+.+.+++
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 35566666 677789999999999999999999 78899999998 77776554 688999999886664
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|++ +.++. ..+|+++.+.|+| ||++++.
T Consensus 181 ~~D~V~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~ 212 (277)
T 1o54_A 181 DVDALFL-----DVPDP--WNYIDKCWEALKG---GGRFATV 212 (277)
T ss_dssp SEEEEEE-----CCSCG--GGTHHHHHHHEEE---EEEEEEE
T ss_pred ccCEEEE-----CCcCH--HHHHHHHHHHcCC---CCEEEEE
Confidence 3 99987 34444 3789999999999 9999988
No 154
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.09 E-value=1.6e-10 Score=99.43 Aligned_cols=94 Identities=12% Similarity=0.127 Sum_probs=77.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-C-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-S-G 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-~-~ 235 (345)
..+++.++ .....+|||||||+|.++..+++. ..+++++|+ +.+++.++ +++++.+|+.+..+ . .
T Consensus 67 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (210)
T 3lbf_A 67 ARMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP 143 (210)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence 34556666 667789999999999999999998 578999999 77777665 58999999988443 3 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++..++|++++ ++++.|+| ||++++.
T Consensus 144 ~D~i~~~~~~~~~~~--------~~~~~L~p---gG~lv~~ 173 (210)
T 3lbf_A 144 FDAIIVTAAPPEIPT--------ALMTQLDE---GGILVLP 173 (210)
T ss_dssp EEEEEESSBCSSCCT--------HHHHTEEE---EEEEEEE
T ss_pred ccEEEEccchhhhhH--------HHHHhccc---CcEEEEE
Confidence 99999999999886 46789999 9999888
No 155
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.09 E-value=3e-10 Score=96.90 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=78.2
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCC--CCeEEEeehhhHhhhCCCceEEeccCCc-C--------------
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYP--QITGINFDLPYVIKNAPCVEHVEGDMFV-N-------------- 231 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p--~~~~~~~Dlp~~i~~a~ri~~~~gd~~~-~-------------- 231 (345)
.+.+.+..+....+|||||||+|.++..+++++| +.+++++|+.++.. ..+++++.+|+.+ +
T Consensus 12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~-~~~v~~~~~d~~~~~~~~~~~~~~i~~~~ 90 (201)
T 2plw_A 12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP-IPNVYFIQGEIGKDNMNNIKNINYIDNMN 90 (201)
T ss_dssp HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC-CTTCEEEECCTTTTSSCCC----------
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC-CCCceEEEccccchhhhhhcccccccccc
Confidence 4555555245667999999999999999999998 68999999955421 2379999999987 4
Q ss_pred -----------CCC-C-CEEEeccccccCC----hhH-----HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 232 -----------VPS-G-QAIFTKSVLLNWS----DEQ-----CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 232 -----------~p~-~-D~i~~~~vlh~~~----d~~-----~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++. . |+|++...+|... +.. ...+|+++++.|+| ||++++.
T Consensus 91 ~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~ 153 (201)
T 2plw_A 91 NNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIVK 153 (201)
T ss_dssp -CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred chhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 353 3 9999988776532 221 13489999999999 9998876
No 156
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.09 E-value=1.7e-10 Score=101.92 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=76.7
Q ss_pred ccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCC--------CCC-C
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNV--------PSG-Q 236 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~--------p~~-D 236 (345)
.+..+|||||||+|..+..+++..| +.+++++|+ |.+++.|+ +++++.+|+.+.+ +.. |
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 3557999999999999999999986 789999999 77777665 7999999997622 223 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
+|++... .+.....|+++.+.|+| ||.|++. +.....
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d-~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTP---KGLIAID-NIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEE---EEEEEEE-CSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCC---CeEEEEE-CCccCC
Confidence 9988643 33446789999999999 9988887 766543
No 157
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.09 E-value=6.3e-10 Score=94.20 Aligned_cols=95 Identities=7% Similarity=-0.110 Sum_probs=76.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcC---CC-CC-CEEEeccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVN---VP-SG-QAIFTKSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~---~p-~~-D~i~~~~v 243 (345)
...+|||+|||+|.++..++++ +..+++++|+ +.+++.++ +++++.+|+.+. ++ .. |+|++...
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 4578999999999999988774 5568999999 88888766 589999999872 33 23 99999888
Q ss_pred cccCChhHHHHHHHHHHh--hCCCCCCCcEEEEEeccC
Q 044482 244 LLNWSDEQCLKILKNCYD--ALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~~d~~ 279 (345)
+|+. .++..++++++.+ .|+| ||.+++. ...
T Consensus 123 ~~~~-~~~~~~~l~~~~~~~~L~p---gG~l~~~-~~~ 155 (189)
T 3p9n_A 123 YNVD-SADVDAILAALGTNGWTRE---GTVAVVE-RAT 155 (189)
T ss_dssp TTSC-HHHHHHHHHHHHHSSSCCT---TCEEEEE-EET
T ss_pred CCcc-hhhHHHHHHHHHhcCccCC---CeEEEEE-ecC
Confidence 6643 4556789999999 9999 9999888 443
No 158
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.08 E-value=1.7e-10 Score=102.35 Aligned_cols=123 Identities=11% Similarity=0.092 Sum_probs=94.1
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~ 234 (345)
..+++.++ .....+|||+|||+|.++..+++. .|..+++++|. +.+++.++ ++++..+|+.+ ++++
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 45666666 777789999999999999999999 78899999998 77765443 58899999988 4764
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCH
Q 044482 235 G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTA 312 (345)
Q Consensus 235 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~ 312 (345)
+ |+|++ ++++. ..+|+++++.|+| ||++++. ..... ..
T Consensus 165 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~-~~~~~-----------------------------~~ 204 (258)
T 2pwy_A 165 AAYDGVAL-----DLMEP--WKVLEKAALALKP---DRFLVAY-LPNIT-----------------------------QV 204 (258)
T ss_dssp TCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEE-ESCHH-----------------------------HH
T ss_pred CCcCEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEE-eCCHH-----------------------------HH
Confidence 3 99987 34444 3789999999999 9999998 42100 12
Q ss_pred HHHHHHHHHCCCCceEEEe
Q 044482 313 GEFKALAMAAGFGTIKVIC 331 (345)
Q Consensus 313 ~e~~~ll~~aGf~~~~~~~ 331 (345)
.++.+.++++||+.+++..
T Consensus 205 ~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 205 LELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHCCCceEEEEE
Confidence 4556777888998766544
No 159
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.08 E-value=9.6e-11 Score=102.81 Aligned_cols=96 Identities=15% Similarity=0.208 Sum_probs=77.1
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC---CC--CEEEe
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP---SG--QAIFT 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p---~~--D~i~~ 240 (345)
..+..+|||||||+|..+..+++.+|..+++++|+ +.+++.|+ +++++.+|+.+.++ .+ |+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 44568999999999999999999889999999999 78777665 68999999987433 33 99986
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
... .+....+|+++++.|+| ||.|++. +.+..
T Consensus 149 ~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~d-~~~~~ 180 (232)
T 3ntv_A 149 DAA-----KAQSKKFFEIYTPLLKH---QGLVITD-NVLYH 180 (232)
T ss_dssp ETT-----SSSHHHHHHHHGGGEEE---EEEEEEE-CTTGG
T ss_pred cCc-----HHHHHHHHHHHHHhcCC---CeEEEEe-eCCcC
Confidence 633 23346789999999999 9988776 55443
No 160
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.08 E-value=1.9e-10 Score=99.28 Aligned_cols=95 Identities=14% Similarity=0.163 Sum_probs=78.6
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-C-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-S-G 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-~-~ 235 (345)
.+++.+. .....+|||||||+|.++..+++.. |+.+++++|. +.+++.++ +++++.+|+..+++ . .
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 4555555 5667899999999999999999987 6689999998 77777665 58899999876555 3 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++..++|++++ ++++.|+| ||++++.
T Consensus 147 fD~v~~~~~~~~~~~--------~~~~~L~p---gG~lv~~ 176 (215)
T 2yxe_A 147 YDRIYTTAAGPKIPE--------PLIRQLKD---GGKLLMP 176 (215)
T ss_dssp EEEEEESSBBSSCCH--------HHHHTEEE---EEEEEEE
T ss_pred eeEEEECCchHHHHH--------HHHHHcCC---CcEEEEE
Confidence 99999999999873 67889999 9999888
No 161
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.08 E-value=4.1e-10 Score=99.13 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=74.4
Q ss_pred ccceEEecCCccHHHHHHHHH----CCCCeEEEeeh-hhHhhhCC----CceEEeccCCcC--CC---C-C-CEEEeccc
Q 044482 180 LKKLVDVASCLGANMSLIVNT----YPQITGINFDL-PYVIKNAP----CVEHVEGDMFVN--VP---S-G-QAIFTKSV 243 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~----~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~~--~p---~-~-D~i~~~~v 243 (345)
..+|||||||+|..+..+++. +|+.+++++|+ |.+++.|+ +++++.+|+.+. ++ . . |+|++...
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~ 161 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 161 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence 469999999999999999998 78899999999 88888775 799999999873 22 3 2 99988655
Q ss_pred cccCChhHHHHHHHHHHh-hCCCCCCCcEEEEEecc
Q 044482 244 LLNWSDEQCLKILKNCYD-ALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~-aL~p~~~gG~lli~~d~ 278 (345)
|. +...+|+++++ .|+| ||++++. +.
T Consensus 162 -~~----~~~~~l~~~~r~~Lkp---GG~lv~~-d~ 188 (236)
T 2bm8_A 162 -HA----NTFNIMKWAVDHLLEE---GDYFIIE-DM 188 (236)
T ss_dssp -CS----SHHHHHHHHHHHTCCT---TCEEEEC-SC
T ss_pred -hH----hHHHHHHHHHHhhCCC---CCEEEEE-eC
Confidence 42 33578999997 9999 9999988 64
No 162
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.08 E-value=2.3e-10 Score=100.28 Aligned_cols=96 Identities=10% Similarity=0.115 Sum_probs=77.8
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-----CC-CEEE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-----SG-QAIF 239 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-----~~-D~i~ 239 (345)
.....+|||||||+|..+..+++.+|+.+++++|. +.+++.++ +++++.+|+.+..+ .. |+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 34557999999999999999999999999999999 77777654 58999999987322 23 9999
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
+....+ ....+|+++.+.|+| ||++++. +....
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~p---gG~lv~~-~~~~~ 164 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVRP---GGLILSD-NVLFR 164 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEEE---EEEEEEE-TTTC-
T ss_pred ECCCHH-----HHHHHHHHHHHHcCC---CeEEEEE-cCCcC
Confidence 987764 335789999999999 9998887 65543
No 163
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.07 E-value=1.3e-10 Score=101.17 Aligned_cols=96 Identities=9% Similarity=0.071 Sum_probs=76.3
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCc---CCC-----CC-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFV---NVP-----SG- 235 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~---~~p-----~~- 235 (345)
..+..+|||||||+|..+..+++..| +.+++++|+ |.+++.|+ +++++.+|+.+ .++ ..
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 34567999999999999999999865 789999999 88887665 59999999855 222 23
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
|+|++....|++.+. .++++.+ +.|+| ||.|++. +..
T Consensus 136 D~V~~d~~~~~~~~~--~~~~~~~-~~Lkp---gG~lv~~-~~~ 172 (221)
T 3u81_A 136 DMVFLDHWKDRYLPD--TLLLEKC-GLLRK---GTVLLAD-NVI 172 (221)
T ss_dssp SEEEECSCGGGHHHH--HHHHHHT-TCCCT---TCEEEES-CCC
T ss_pred EEEEEcCCcccchHH--HHHHHhc-cccCC---CeEEEEe-CCC
Confidence 999999888776443 4678888 99999 9988777 554
No 164
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.07 E-value=1.4e-10 Score=102.09 Aligned_cols=94 Identities=10% Similarity=0.101 Sum_probs=70.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC-------------C--CceEEeccCCc--C--CCCC--C
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA-------------P--CVEHVEGDMFV--N--VPSG--Q 236 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a-------------~--ri~~~~gd~~~--~--~p~~--D 236 (345)
...+|||||||+|.++..+++.+|+..++++|+ +.+++.| . +++++.+|+.+ + ++++ |
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 456899999999999999999999999999999 7776532 1 79999999986 2 4544 8
Q ss_pred EEEeccccccCChhH------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLLNWSDEQ------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.|++.....++.... ...+|+++++.|+| ||.|++.
T Consensus 126 ~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~ 167 (235)
T 3ckk_A 126 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTI 167 (235)
T ss_dssp EEEEESCC-----------CCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred EEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEE
Confidence 887643322111000 03689999999999 9999887
No 165
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.05 E-value=4.2e-10 Score=101.58 Aligned_cols=145 Identities=13% Similarity=0.104 Sum_probs=93.2
Q ss_pred HHHHhccCcc-cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEe-ccCCc----CCCC--C
Q 044482 169 KILEIYKGFK-ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVE-GDMFV----NVPS--G 235 (345)
Q Consensus 169 ~i~~~~~~~~-~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~-gd~~~----~~p~--~ 235 (345)
.+++.+. .. ...+|||||||+|.++..+++. +..+++++|+ +.|++.+. |+.... .|+.. .+|. -
T Consensus 75 ~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~f 152 (291)
T 3hp7_A 75 KALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLP 152 (291)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCC
T ss_pred HHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCC
Confidence 4556555 33 3468999999999999998886 4568999999 77876532 443332 34322 2443 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCch-hhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSS-INRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|++++...+|++ ..+|+++++.|+| ||++++. - .|+-..... ........|-. ...++.++
T Consensus 153 D~v~~d~sf~sl-----~~vL~e~~rvLkp---GG~lv~l-v--kPqfe~~~~~~~~~G~vrd~~-------~~~~~~~~ 214 (291)
T 3hp7_A 153 SFASIDVSFISL-----NLILPALAKILVD---GGQVVAL-V--KPQFEAGREQIGKNGIVRESS-------IHEKVLET 214 (291)
T ss_dssp SEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEE-E--CGGGTSCGGGCC-CCCCCCHH-------HHHHHHHH
T ss_pred CEEEEEeeHhhH-----HHHHHHHHHHcCc---CCEEEEE-E--CcccccChhhcCCCCccCCHH-------HHHHHHHH
Confidence 999998888765 4689999999999 9999886 2 111100000 00000001100 01235788
Q ss_pred HHHHHHHCCCCceEEEecC
Q 044482 315 FKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~~ 333 (345)
+.++++++||++..+...+
T Consensus 215 v~~~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 215 VTAFAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHHHHTTEEEEEEEECS
T ss_pred HHHHHHHCCCEEEEEEECC
Confidence 9999999999988876553
No 166
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.05 E-value=4.6e-10 Score=101.25 Aligned_cols=117 Identities=14% Similarity=0.050 Sum_probs=89.3
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC-C-CEEEecccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS-G-QAIFTKSVL 244 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~-~-D~i~~~~vl 244 (345)
....+|||+|||+|.++..+++..+. +++++|+ |.+++.++ +++++.+|+++..+. . |+|++....
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 34679999999999999999999877 8999999 78877665 488999999984433 3 999885331
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCC
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf 324 (345)
....+++++.+.|+| ||.+++. +...... ......+++.+.++++||
T Consensus 203 ------~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~ 249 (278)
T 2frn_A 203 ------RTHEFIPKALSIAKD---GAIIHYH-NTVPEKL-----------------------MPREPFETFKRITKEYGY 249 (278)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEE-EEEEGGG-----------------------TTTTTHHHHHHHHHHTTC
T ss_pred ------hHHHHHHHHHHHCCC---CeEEEEE-Eeecccc-----------------------ccccHHHHHHHHHHHcCC
Confidence 124689999999999 9999998 5421100 011246778999999999
Q ss_pred CceE
Q 044482 325 GTIK 328 (345)
Q Consensus 325 ~~~~ 328 (345)
+...
T Consensus 250 ~~~~ 253 (278)
T 2frn_A 250 DVEK 253 (278)
T ss_dssp EEEE
T ss_pred eeEE
Confidence 8765
No 167
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.04 E-value=2.6e-10 Score=100.17 Aligned_cols=96 Identities=19% Similarity=0.218 Sum_probs=79.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-C
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS-G 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~-~ 235 (345)
...+++.++ .....+|||||||+|.++..+++..| .+++++|. +.+++.++ +++++.+|+..+++. +
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 345556665 66778999999999999999999988 89999998 77777665 588999998556652 2
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 --QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 --D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++..+++++.+ ++.+.|+| ||++++.
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~p---gG~lvi~ 188 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKI---GGKLIIP 188 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEE
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCC---CcEEEEE
Confidence 99999999998875 56789999 9999888
No 168
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.04 E-value=5e-10 Score=103.96 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=76.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCC-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPS-G 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~-~ 235 (345)
..+.+... .....+|||||||+|.++..++++ +..+++++|..++++.|+ +++++.+|+.+ ++|. .
T Consensus 54 ~~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 131 (340)
T 2fyt_A 54 DFIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEK 131 (340)
T ss_dssp HHHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSC
T ss_pred HHHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCc
Confidence 34445544 556689999999999999999887 456899999955776554 68999999988 6763 3
Q ss_pred -CEEEeccccccCC-hhHHHHHHHHHHhhCCCCCCCcEEE
Q 044482 236 -QAIFTKSVLLNWS-DEQCLKILKNCYDALPKSRKHGRTQ 273 (345)
Q Consensus 236 -D~i~~~~vlh~~~-d~~~~~iL~~~~~aL~p~~~gG~ll 273 (345)
|+|++..+.+.+. ......+|+++++.|+| ||+++
T Consensus 132 ~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 168 (340)
T 2fyt_A 132 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAK---GGSVY 168 (340)
T ss_dssp EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred EEEEEEcCchhhccCHHHHHHHHHHHHhhcCC---CcEEE
Confidence 9999877433222 23446799999999999 99887
No 169
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.04 E-value=6.6e-10 Score=98.47 Aligned_cols=95 Identities=11% Similarity=0.067 Sum_probs=76.3
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcC---CCC--C-CEE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVN---VPS--G-QAI 238 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~---~p~--~-D~i 238 (345)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.++ +++++.+|+.+. ++. . |+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 44568999999999999999999998 789999999 77777655 689999998762 222 3 999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
++.. +.......|+++++.|+| ||.|++. +...
T Consensus 141 ~~d~-----~~~~~~~~l~~~~~~Lkp---GG~lv~~-~~~~ 173 (248)
T 3tfw_A 141 FIDA-----DKPNNPHYLRWALRYSRP---GTLIIGD-NVVR 173 (248)
T ss_dssp EECS-----CGGGHHHHHHHHHHTCCT---TCEEEEE-CCSG
T ss_pred EECC-----chHHHHHHHHHHHHhcCC---CeEEEEe-CCCc
Confidence 8854 334456789999999999 9988777 6543
No 170
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.03 E-value=2.5e-10 Score=106.37 Aligned_cols=94 Identities=15% Similarity=0.085 Sum_probs=75.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCC--CEEEeccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSG--QAIFTKSV 243 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~--D~i~~~~v 243 (345)
.....+|||||||+|.++..++++ +..+++++|+.++++.|+ +++++.+|+.+ ++|.+ |+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 345579999999999999999987 667999999966777665 49999999998 77743 99999776
Q ss_pred cccCC-hhHHHHHHHHHHhhCCCCCCCcEEEE
Q 044482 244 LLNWS-DEQCLKILKNCYDALPKSRKHGRTQL 274 (345)
Q Consensus 244 lh~~~-d~~~~~iL~~~~~aL~p~~~gG~lli 274 (345)
.+.+. .+....+|+++.+.|+| ||.++.
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~Lkp---gG~li~ 171 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAP---DGLIFP 171 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEE---EEEEES
T ss_pred cccccCchhHHHHHHHHHHhCCC---CCEEcc
Confidence 55442 23345789999999999 998763
No 171
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.03 E-value=3e-10 Score=101.43 Aligned_cols=96 Identities=10% Similarity=0.125 Sum_probs=74.6
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcC--------CCC
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVN--------VPS 234 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~--------~p~ 234 (345)
.....+|||+|||+|.++..+++++|..+++++|+ +.+++.++ |++++.+|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45567999999999999999999999999999999 77766543 488999999874 333
Q ss_pred -C-CEEEeccccc----------------cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 -G-QAIFTKSVLL----------------NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 -~-D~i~~~~vlh----------------~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|+++-.++ +........+++.+.+.|+| ||+++++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 169 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLI 169 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEE
Confidence 3 9999973322 22223356889999999999 9999887
No 172
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.03 E-value=1.5e-10 Score=100.76 Aligned_cols=95 Identities=13% Similarity=0.032 Sum_probs=75.7
Q ss_pred ccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC--------CC-C
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP--------SG-Q 236 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p--------~~-D 236 (345)
....+|||||||+|..+..+++.+| +.+++++|+ +.+++.++ +++++.+|+.+..+ .. |
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 3557999999999999999999988 789999999 77777655 59999999876322 23 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
+|++... .+....+++++++.|+| ||.|++. +...+
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~-~~~~~ 178 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLRE---GGLIAVD-NVLRR 178 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEE-CSSGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCC---CcEEEEe-CCCcC
Confidence 9986542 34456789999999999 9988887 66543
No 173
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.02 E-value=8.7e-10 Score=99.75 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=73.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-CC---CEEEec--
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-SG---QAIFTK-- 241 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-~~---D~i~~~-- 241 (345)
...+|||||||+|.++..+++. |+.+++++|+ +.+++.|+ |++++.+|++++++ .. |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4468999999999999999999 9999999999 88887665 49999999998554 45 999986
Q ss_pred ----------cccccCChh------HHHHHHHHHH-hhCCCCCCCcEEEEE
Q 044482 242 ----------SVLLNWSDE------QCLKILKNCY-DALPKSRKHGRTQLR 275 (345)
Q Consensus 242 ----------~vlh~~~d~------~~~~iL~~~~-~aL~p~~~gG~lli~ 275 (345)
.+. +.+.. +...+++++. +.|+| ||.+++.
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~e 248 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLME 248 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEEE
Confidence 333 22221 1137899999 99999 9988865
No 174
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.02 E-value=5.5e-10 Score=97.51 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=78.4
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCcCCC-C-C-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFVNVP-S-G-Q 236 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~~~p-~-~-D 236 (345)
..+++.+. .....+|||||||+|.++..+++.. .+++++|. +.+++.++ +++++.+|+.+..+ . . |
T Consensus 60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 34555555 6667899999999999999999986 68999998 78877665 58899999987444 2 3 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
+|++..++|++.+ ++++.|+| ||++++. ..
T Consensus 137 ~v~~~~~~~~~~~--------~~~~~L~p---gG~l~~~-~~ 166 (231)
T 1vbf_A 137 RVVVWATAPTLLC--------KPYEQLKE---GGIMILP-IG 166 (231)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEE---EEEEEEE-EC
T ss_pred EEEECCcHHHHHH--------HHHHHcCC---CcEEEEE-Ec
Confidence 9999999999874 47789999 9999888 43
No 175
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.02 E-value=2.9e-10 Score=103.84 Aligned_cols=92 Identities=11% Similarity=0.155 Sum_probs=74.9
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc---CCCC-C-CEEEeccccc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV---NVPS-G-QAIFTKSVLL 245 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~---~~p~-~-D~i~~~~vlh 245 (345)
.+|||||||+|.++..+++++|+.+++++|+ |.|++.++ |++++.+|..+ ..+. . |+|++....+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 4899999999999999999999999999999 88888765 79999999876 2343 3 9999865544
Q ss_pred cCChhHH--HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 246 NWSDEQC--LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d~~~--~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
....... ..+++++++.|+| ||.+++.
T Consensus 171 ~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~ 199 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAP---GGLYVAN 199 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEE---EEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 3322221 5789999999999 9988877
No 176
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.00 E-value=2.4e-10 Score=106.85 Aligned_cols=94 Identities=6% Similarity=0.060 Sum_probs=73.9
Q ss_pred cccceEEecCC------ccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCCCceEEeccCCc-CCC-------CC-CEEEec
Q 044482 179 ELKKLVDVASC------LGANMSLIVNT-YPQITGINFDL-PYVIKNAPCVEHVEGDMFV-NVP-------SG-QAIFTK 241 (345)
Q Consensus 179 ~~~~vlDiGgG------~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~ri~~~~gd~~~-~~p-------~~-D~i~~~ 241 (345)
...+||||||| +|..+..++++ +|+.+++++|+ +.+.....+++|+.+|+.+ +++ .. |+|++.
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisd 295 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVDELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDD 295 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGGCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEEC
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhhcCCCcEEEEecccccchhhhhhcccCCccEEEEC
Confidence 34789999999 66667777765 69999999999 6665433399999999987 554 23 999876
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
..|++. +..+.|+++++.||| ||.++|. |..
T Consensus 296 -gsH~~~--d~~~aL~el~rvLKP---GGvlVi~-Dl~ 326 (419)
T 3sso_A 296 -GSHINA--HVRTSFAALFPHVRP---GGLYVIE-DMW 326 (419)
T ss_dssp -SCCCHH--HHHHHHHHHGGGEEE---EEEEEEE-CGG
T ss_pred -Ccccch--hHHHHHHHHHHhcCC---CeEEEEE-ecc
Confidence 456654 346899999999999 9999998 765
No 177
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=98.99 E-value=3.1e-10 Score=100.44 Aligned_cols=90 Identities=13% Similarity=0.204 Sum_probs=70.0
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC---------------C--CceEEeccCCcC----CCCC
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA---------------P--CVEHVEGDMFVN----VPSG 235 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a---------------~--ri~~~~gd~~~~----~p~~ 235 (345)
....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+ . +++++.+|+++. ++.+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 3557899999999999999999999999999998 6666533 2 789999999873 3333
Q ss_pred --CEEEeccccccCChhHH-----------HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 --QAIFTKSVLLNWSDEQC-----------LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 --D~i~~~~vlh~~~d~~~-----------~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|.|++ +++++.. ..+|+++.+.|+| ||.|++.
T Consensus 128 ~~d~v~~-----~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~ 172 (246)
T 2vdv_E 128 QLSKMFF-----CFPDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTI 172 (246)
T ss_dssp CEEEEEE-----ESCCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccCEEEE-----ECCCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEE
Confidence 55553 2344321 3789999999999 9999887
No 178
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=98.99 E-value=1.6e-09 Score=94.33 Aligned_cols=91 Identities=14% Similarity=0.104 Sum_probs=72.3
Q ss_pred cceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC-----------CceEEeccCCcC---CCC-C-CEEEecc
Q 044482 181 KKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP-----------CVEHVEGDMFVN---VPS-G-QAIFTKS 242 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~---~p~-~-D~i~~~~ 242 (345)
.+|||||||+|..+..+++..| +.+++++|+ +.+++.|+ +++++.+|+.+. +++ . |+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 4899999999999999999875 789999999 77777654 589999998772 323 3 9998864
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
.. ......++++.+.|+| ||.|++. +...
T Consensus 138 ~~-----~~~~~~l~~~~~~Lkp---GG~lv~d-n~~~ 166 (221)
T 3dr5_A 138 SP-----MDLKALVDAAWPLLRR---GGALVLA-DALL 166 (221)
T ss_dssp CT-----TTHHHHHHHHHHHEEE---EEEEEET-TTTG
T ss_pred cH-----HHHHHHHHHHHHHcCC---CcEEEEe-CCCC
Confidence 32 3345689999999999 9887776 6554
No 179
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=98.99 E-value=5.7e-10 Score=105.04 Aligned_cols=92 Identities=10% Similarity=0.012 Sum_probs=78.1
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcC-CC-CC-CEEEecccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVN-VP-SG-QAIFTKSVLLN 246 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~-~p-~~-D~i~~~~vlh~ 246 (345)
...+|||+|||+|.++..++++ +.+++++|. +.+++.++ +++++.+|+.+. .+ .. |+|+++..+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 4468999999999999999987 468999998 77887766 588999999984 33 23 99999999987
Q ss_pred ---CChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 247 ---WSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 247 ---~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
...+....+++++++.|+| ||+++|+
T Consensus 311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv 339 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRP---GGVFFLV 339 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCc---CcEEEEE
Confidence 4456678999999999999 9999988
No 180
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=98.98 E-value=6.9e-10 Score=102.03 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=78.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-C-
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-S- 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-~- 234 (345)
..+++.++ .....+|||||||+|.++..+++..+ +.+++++|+ +.+++.++ +++++.+|+.+..+ .
T Consensus 65 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 34556565 66678999999999999999999987 478999998 77777665 58999999987433 3
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|++..++|++. +++.+.|+| ||++++.
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~Lkp---gG~lvi~ 174 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVP 174 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEE---EEEEEEE
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCC---CcEEEEE
Confidence 3 9999999999987 457789999 9999887
No 181
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=98.97 E-value=5.5e-10 Score=93.94 Aligned_cols=92 Identities=11% Similarity=-0.060 Sum_probs=71.1
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCC------CCC-CEE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNV------PSG-QAI 238 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~------p~~-D~i 238 (345)
.....+|||+|||+|.++..+++ .+..+++++|+ +.+++.++ +++++.+|+.+.. +.. |+|
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i 120 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 120 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEE
Confidence 34567999999999999999887 55679999999 88887665 5899999998722 233 999
Q ss_pred EeccccccCChhHHHHHHHHH--HhhCCCCCCCcEEEEE
Q 044482 239 FTKSVLLNWSDEQCLKILKNC--YDALPKSRKHGRTQLR 275 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~--~~aL~p~~~gG~lli~ 275 (345)
++...+|....+ .+++.+ .+.|+| ||.+++.
T Consensus 121 ~~~~~~~~~~~~---~~~~~l~~~~~L~~---gG~l~~~ 153 (187)
T 2fhp_A 121 LLDPPYAKQEIV---SQLEKMLERQLLTN---EAVIVCE 153 (187)
T ss_dssp EECCCGGGCCHH---HHHHHHHHTTCEEE---EEEEEEE
T ss_pred EECCCCCchhHH---HHHHHHHHhcccCC---CCEEEEE
Confidence 998886643333 345555 888999 9998887
No 182
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=98.96 E-value=9.5e-10 Score=101.60 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=73.3
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCC-CC-CEEEeccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVP-SG-QAIFTKSV 243 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p-~~-D~i~~~~v 243 (345)
.....+|||||||+|.++..++++ +..+++++|..++++.++ +++++.+|+.+ ++| .. |+|++..+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 345579999999999999998876 556899999966766554 58999999988 666 34 99999866
Q ss_pred cccCCh-hHHHHHHHHHHhhCCCCCCCcEEEE
Q 044482 244 LLNWSD-EQCLKILKNCYDALPKSRKHGRTQL 274 (345)
Q Consensus 244 lh~~~d-~~~~~iL~~~~~aL~p~~~gG~lli 274 (345)
.+.+.. +....+|+++++.|+| ||+++.
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li~ 143 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVE---GGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEE---EEEEES
T ss_pred hhhcccHHHHHHHHHHHHhhcCC---CeEEEE
Confidence 554432 2345789999999999 998863
No 183
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=98.95 E-value=2.8e-10 Score=95.16 Aligned_cols=100 Identities=7% Similarity=0.020 Sum_probs=74.5
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCC---CC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNV---PS 234 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~---p~ 234 (345)
.+++.+.......+|||+|||+|.++..++++ +..+++++|+ +.+++.++ +++++.+|+.+.. +.
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG 99 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence 33444332345679999999999999999987 6679999999 78877665 5889999998732 23
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHH--hhCCCCCCCcEEEEE
Q 044482 235 G-QAIFTKSVLLNWSDEQCLKILKNCY--DALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~-D~i~~~~vlh~~~d~~~~~iL~~~~--~aL~p~~~gG~lli~ 275 (345)
. |+|++...+|. .....+++.+. +.|+| ||.+++.
T Consensus 100 ~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~---gG~l~~~ 137 (177)
T 2esr_A 100 RFDLVFLDPPYAK---ETIVATIEALAAKNLLSE---QVMVVCE 137 (177)
T ss_dssp CEEEEEECCSSHH---HHHHHHHHHHHHTTCEEE---EEEEEEE
T ss_pred CCCEEEECCCCCc---chHHHHHHHHHhCCCcCC---CcEEEEE
Confidence 3 99999876542 22345666666 89999 9998887
No 184
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=98.95 E-value=7e-10 Score=100.79 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=69.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------CceEEeccCCcCCC--C-C-CEEE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------CVEHVEGDMFVNVP--S-G-QAIF 239 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~~~p--~-~-D~i~ 239 (345)
+..+|||||||+|.++..+++..|..+++++|+ |.+++.|+ |++++.+|.++.++ . . |+|+
T Consensus 83 ~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvIi 162 (294)
T 3adn_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII 162 (294)
T ss_dssp TCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEEE
T ss_pred CCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEEE
Confidence 467999999999999999999877889999999 77776543 78999999987433 2 3 9999
Q ss_pred eccccccCChhHH--HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVLLNWSDEQC--LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vlh~~~d~~~--~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+....+.-+.... ..++++++++|+| ||.+++.
T Consensus 163 ~D~~~p~~~~~~l~~~~f~~~~~~~Lkp---gG~lv~~ 197 (294)
T 3adn_A 163 SDCTDPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQ 197 (294)
T ss_dssp ECC----------CCHHHHHHHHHTEEE---EEEEEEE
T ss_pred ECCCCccCcchhccHHHHHHHHHHhcCC---CCEEEEe
Confidence 8554433222222 5789999999999 9988887
No 185
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=98.95 E-value=7.6e-10 Score=95.32 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=74.7
Q ss_pred cccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC--CC-CEEEeccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP--SG-QAIFTKSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p--~~-D~i~~~~v 243 (345)
+..+|||||||+|..+..+++..| +.+++++|+ +.+++.++ +++++.+|..+..+ .+ |+|++...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 457999999999999999999988 789999999 78877665 58999999876322 33 88877632
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
......+|+++++.|+| ||.+++. +....
T Consensus 136 -----~~~~~~~l~~~~~~Lkp---gG~lv~~-~~~~~ 164 (210)
T 3c3p_A 136 -----VFNGADVLERMNRCLAK---NALLIAV-NALRR 164 (210)
T ss_dssp -----TSCHHHHHHHHGGGEEE---EEEEEEE-SSSSC
T ss_pred -----hhhhHHHHHHHHHhcCC---CeEEEEE-Ccccc
Confidence 23346889999999999 9988876 65543
No 186
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=98.95 E-value=9.1e-10 Score=98.44 Aligned_cols=89 Identities=16% Similarity=0.154 Sum_probs=74.9
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC--CEEEeccccccCCh
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSD 249 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d 249 (345)
....+|||||||+|.++..+++..|+.+++++|+ +.+++.++ ++.++.+|+.+ +++++ |+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 3457899999999999999999998889999999 88888776 78999999887 66644 999987653
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
..++++++.|+| ||++++. +..
T Consensus 159 ----~~l~~~~~~L~p---gG~l~~~-~~~ 180 (269)
T 1p91_A 159 ----CKAEELARVVKP---GGWVITA-TPG 180 (269)
T ss_dssp ----CCHHHHHHHEEE---EEEEEEE-EEC
T ss_pred ----hhHHHHHHhcCC---CcEEEEE-EcC
Confidence 248999999999 9999998 643
No 187
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=98.94 E-value=1.2e-09 Score=102.83 Aligned_cols=101 Identities=15% Similarity=0.063 Sum_probs=78.8
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCC-CE
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSG-QA 237 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~-D~ 237 (345)
+.+... .....+|||||||+|.++..++++. ..+++++|...+++.++ +++++.+|+.+ ++|.. |+
T Consensus 55 i~~~~~-~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 132 (376)
T 3r0q_C 55 VFQNKH-HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDV 132 (376)
T ss_dssp HHTTTT-TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEE
T ss_pred HHhccc-cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceE
Confidence 334334 4566899999999999999999873 34899999977766655 58999999988 66644 99
Q ss_pred EEeccccccCChh-HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLLNWSDE-QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh~~~d~-~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|++..+.|....+ ....+++++++.|+| ||.+++.
T Consensus 133 Iv~~~~~~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~ 168 (376)
T 3r0q_C 133 IISEWMGYFLLRESMFDSVISARDRWLKP---TGVMYPS 168 (376)
T ss_dssp EEECCCBTTBTTTCTHHHHHHHHHHHEEE---EEEEESS
T ss_pred EEEcChhhcccchHHHHHHHHHHHhhCCC---CeEEEEe
Confidence 9997766665433 356789999999999 9988765
No 188
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.94 E-value=6.5e-10 Score=96.91 Aligned_cols=95 Identities=11% Similarity=0.116 Sum_probs=74.8
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcC---CC-----CC-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVN---VP-----SG- 235 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~---~p-----~~- 235 (345)
.....+|||||||+|..+..+++..| +.+++++|. +.+++.++ +++++.+|+.+. ++ ..
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 34557999999999999999999987 789999999 77776554 689999998762 21 23
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
|+|++... ......+++++.+.|+| ||.+++. +...
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~-~~~~ 182 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRP---GGILAVL-RVLW 182 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEE---EEEEEEE-CCSG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEE-CCCc
Confidence 99988543 33446789999999999 9988887 6543
No 189
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=98.92 E-value=3.2e-09 Score=99.07 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=82.5
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCC-
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVP- 233 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p- 233 (345)
+..++.... +....+|||+|||+|.++..++... |+.+++++|+ |.+++.|+ +++++.+|+.+ +.+
T Consensus 192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 344555555 7778899999999999999999988 8899999999 88887766 58999999988 544
Q ss_pred CC-CEEEeccccccCCh--hH----HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 SG-QAIFTKSVLLNWSD--EQ----CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 ~~-D~i~~~~vlh~~~d--~~----~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.. |+|+++-..+.... .+ ...+++++++.|+| ||++++.
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~ 316 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALL 316 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEE
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEE
Confidence 33 99999654432211 11 25789999999999 9999988
No 190
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=98.92 E-value=1.9e-10 Score=106.53 Aligned_cols=97 Identities=16% Similarity=0.129 Sum_probs=73.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC--------------------CceEEe
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP--------------------CVEHVE 225 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~--------------------ri~~~~ 225 (345)
..+++.++ .....+|||||||+|.++..+++. .|+.+++++|+ |.+++.|+ +++++.
T Consensus 95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 34555555 667789999999999999999998 58789999999 77665543 588999
Q ss_pred ccCCcC---CCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 226 GDMFVN---VPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 226 gd~~~~---~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|+.+. ++.+ |+|++.. ++. ..+++++++.|+| ||++++.
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~-----~~~--~~~l~~~~~~Lkp---gG~lv~~ 218 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDM-----LNP--HVTLPVFYPHLKH---GGVCAVY 218 (336)
T ss_dssp SCTTCCC-------EEEEEECS-----SST--TTTHHHHGGGEEE---EEEEEEE
T ss_pred CChHHcccccCCCCeeEEEECC-----CCH--HHHHHHHHHhcCC---CcEEEEE
Confidence 999873 3433 9998743 222 1379999999999 9999988
No 191
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=98.92 E-value=1.1e-09 Score=96.41 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=75.4
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-----------
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP----------- 233 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p----------- 233 (345)
.....+|||||||+|..+..+++..| ..+++++|. +.+++.++ +++++.+|+.+..+
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 34567999999999999999999988 689999999 77777655 48999999865211
Q ss_pred --------CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 234 --------SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 234 --------~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
.. |+|++... .+....+|+++++.|+| ||++++. +...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~-~~~~ 184 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKP---GGLLIAD-NVLW 184 (239)
T ss_dssp GTTTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEE-CSSG
T ss_pred cccccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCC---CeEEEEE-cccc
Confidence 23 99988744 33446789999999999 9998887 6544
No 192
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=98.91 E-value=6.3e-10 Score=92.08 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=69.1
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCC------CC-CEEEecc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVP------SG-QAIFTKS 242 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p------~~-D~i~~~~ 242 (345)
...+|||+|||+|.++..++++.++ ++++|+ +.+++.++ +++++.+|+.+..+ .. |+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 4578999999999999999998776 999999 88887766 58999999876322 13 9999998
Q ss_pred ccccCChhHHHHHHHHHH--hhCCCCCCCcEEEEE
Q 044482 243 VLLNWSDEQCLKILKNCY--DALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~--~aL~p~~~gG~lli~ 275 (345)
.+| -..+ .+++.+. +.|+| ||.+++.
T Consensus 119 ~~~-~~~~---~~~~~~~~~~~L~~---gG~~~~~ 146 (171)
T 1ws6_A 119 PYA-MDLA---ALFGELLASGLVEA---GGLYVLQ 146 (171)
T ss_dssp CTT-SCTT---HHHHHHHHHTCEEE---EEEEEEE
T ss_pred CCc-hhHH---HHHHHHHhhcccCC---CcEEEEE
Confidence 876 2233 3444444 99999 9998887
No 193
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=98.90 E-value=2e-09 Score=98.85 Aligned_cols=102 Identities=12% Similarity=0.114 Sum_probs=77.0
Q ss_pred HhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CC-CCC-CE
Q 044482 172 EIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NV-PSG-QA 237 (345)
Q Consensus 172 ~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~-p~~-D~ 237 (345)
..++ .....+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++ +++++.+|+.+ +. +.. |+
T Consensus 112 ~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~ 190 (315)
T 1ixk_A 112 VALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK 190 (315)
T ss_dssp HHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEE
T ss_pred HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCE
Confidence 3344 55668999999999999999999975 489999999 77776654 67899999987 32 333 99
Q ss_pred EEec------ccccc-------CChhHH-------HHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 238 IFTK------SVLLN-------WSDEQC-------LKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 238 i~~~------~vlh~-------~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
|++. .+++. |+.++. .++|+++++.|+| ||++++. ..
T Consensus 191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~s-tc 247 (315)
T 1ixk_A 191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYS-TC 247 (315)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE-ES
T ss_pred EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEE-eC
Confidence 9983 23332 333322 5899999999999 9999887 54
No 194
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=98.90 E-value=2.2e-09 Score=91.01 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=76.1
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCC---------CeEEEeehhhHhhhCCCceEE-eccCCc-C------
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ---------ITGINFDLPYVIKNAPCVEHV-EGDMFV-N------ 231 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~---------~~~~~~Dlp~~i~~a~ri~~~-~gd~~~-~------ 231 (345)
.+.+.+..+....+|||||||+|.++..++++++. .+++++|+.++.. ..+++++ .+|+.+ +
T Consensus 12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-LEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-CTTCEEECSCCTTSHHHHHHHH
T ss_pred HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-CCCCeEEEeccCCCHHHHHHHH
Confidence 34444543456689999999999999999999875 7999999955321 1278899 999876 2
Q ss_pred --CCC-C-CEEEecccccc---C-ChhH-----HHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 232 --VPS-G-QAIFTKSVLLN---W-SDEQ-----CLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 232 --~p~-~-D~i~~~~vlh~---~-~d~~-----~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
++. . |+|++...+|. + .+.. ...+|+++++.|+| ||++++. ..
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~-~~ 146 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCK-TW 146 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE-EC
T ss_pred HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEE-ec
Confidence 232 3 99998654432 1 2221 14789999999999 9999888 54
No 195
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=98.90 E-value=1.7e-09 Score=95.88 Aligned_cols=94 Identities=13% Similarity=0.116 Sum_probs=74.5
Q ss_pred ccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcC---C------CCC-
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVN---V------PSG- 235 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~---~------p~~- 235 (345)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.++ +++++.+|..+. + +..
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3457999999999999999999988 789999999 77777654 689999998762 2 223
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
|+|++... ......+++++.+.|+| ||.|++. +.+.
T Consensus 158 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d-~~~~ 193 (247)
T 1sui_A 158 DFIFVDAD-----KDNYLNYHKRLIDLVKV---GGVIGYD-NTLW 193 (247)
T ss_dssp SEEEECSC-----STTHHHHHHHHHHHBCT---TCCEEEE-CTTG
T ss_pred EEEEEcCc-----hHHHHHHHHHHHHhCCC---CeEEEEe-cCCc
Confidence 99998643 23346889999999999 9988776 5543
No 196
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.90 E-value=4e-09 Score=91.82 Aligned_cols=92 Identities=10% Similarity=-0.026 Sum_probs=76.2
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-CEEEeccccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-QAIFTKSVLL 245 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D~i~~~~vlh 245 (345)
+..+.+|||||||.|-++..+. |..+++++|+ +.+++.++ +.++..+|+.. +.|.. |++++.-++|
T Consensus 103 ~~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 103 AETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp SCCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHH
Confidence 3456899999999999999988 8999999999 88888776 57889999998 55543 9999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++.+.+....+ ++.++|++ ++.++..
T Consensus 180 ~LE~q~~~~~~-~ll~aL~~---~~vvVsf 205 (253)
T 3frh_A 180 LLEREQAGSAM-ALLQSLNT---PRMAVSF 205 (253)
T ss_dssp HHHHHSTTHHH-HHHHHCBC---SEEEEEE
T ss_pred HhhhhchhhHH-HHHHHhcC---CCEEEEc
Confidence 99887766666 89999999 7655555
No 197
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.85 E-value=2.3e-10 Score=100.72 Aligned_cols=131 Identities=18% Similarity=0.143 Sum_probs=91.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-CC-CEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-SG-QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-~~-D~i~~~~vlh 245 (345)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.++ +++++.+|+.+..+ .. |+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 45799999999999999999874 78999999 78877665 58999999988334 33 9999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCC
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~ 325 (345)
+.++.. ..+.++++.|+| ||.+++. .. ..... +.. .. -......+++..++...|..
T Consensus 156 ~~~~~~--~~~~~~~~~L~p---gG~~i~~-~~-~~~~~------------~~~---~~-lp~~~~~~~~~~~l~~~g~~ 212 (241)
T 3gdh_A 156 GPDYAT--AETFDIRTMMSP---DGFEIFR-LS-KKITN------------NIV---YF-LPRNADIDQVASLAGPGGQV 212 (241)
T ss_dssp SGGGGG--SSSBCTTTSCSS---CHHHHHH-HH-HHHCS------------CEE---EE-EETTBCHHHHHHTTCTTCCE
T ss_pred Ccchhh--hHHHHHHhhcCC---cceeHHH-HH-HhhCC------------ceE---EE-CCCCCCHHHHHHHhccCCCE
Confidence 877664 367789999999 9984443 21 11000 000 00 11223567788888887765
Q ss_pred ceEEEecCC
Q 044482 326 TIKVICRSY 334 (345)
Q Consensus 326 ~~~~~~~~~ 334 (345)
.+......+
T Consensus 213 ~i~~~~~~~ 221 (241)
T 3gdh_A 213 EIEQNFLNN 221 (241)
T ss_dssp EEEEEEETT
T ss_pred EEEehhhcC
Confidence 555554444
No 198
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=98.84 E-value=3.4e-09 Score=90.11 Aligned_cols=102 Identities=14% Similarity=0.193 Sum_probs=74.0
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCCCceEEeccCCcCC---------C----C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAPCVEHVEGDMFVNV---------P----S 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~ri~~~~gd~~~~~---------p----~ 234 (345)
..+.+.+..+....+|||+|||+|.++..++++ ..+++++|+.++. ...+++++.+|+.+.. + .
T Consensus 14 ~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (191)
T 3dou_A 14 EFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-EIAGVRFIRCDIFKETIFDDIDRALREEGIE 90 (191)
T ss_dssp HHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-CCTTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred HHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-cCCCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence 356666653456789999999999999999988 6789999995432 1228999999998731 1 1
Q ss_pred C-CEEEeccccc---cCC------hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 G-QAIFTKSVLL---NWS------DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~-D~i~~~~vlh---~~~------d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|++..... ++. .+.+..+|+.+.+.|+| ||++++.
T Consensus 91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k 138 (191)
T 3dou_A 91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLK 138 (191)
T ss_dssp SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 3 9998853221 111 12245789999999999 9998876
No 199
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=98.83 E-value=4.1e-09 Score=90.33 Aligned_cols=90 Identities=10% Similarity=0.008 Sum_probs=69.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc--CCCC-C-CEEEecccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV--NVPS-G-QAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~--~~p~-~-D~i~~~~vl 244 (345)
...+|||+|||+|.++..++++.. .+++++|+ +.+++.++ +++++.+|+.+ +.+. . |+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 347899999999999999887753 38999999 88887765 68999999877 3333 3 999998775
Q ss_pred ccCChhHHHHHHHHHHh--hCCCCCCCcEEEEE
Q 044482 245 LNWSDEQCLKILKNCYD--ALPKSRKHGRTQLR 275 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~ 275 (345)
| +.+ ...+++.+.+ .|+| ||.+++.
T Consensus 133 ~-~~~--~~~~l~~l~~~~~L~p---gG~l~i~ 159 (202)
T 2fpo_A 133 R-RGL--LEETINLLEDNGWLAD---EALIYVE 159 (202)
T ss_dssp S-TTT--HHHHHHHHHHTTCEEE---EEEEEEE
T ss_pred C-CCc--HHHHHHHHHhcCccCC---CcEEEEE
Confidence 5 332 2466777765 4999 9988877
No 200
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.83 E-value=3.5e-09 Score=93.18 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=73.9
Q ss_pred ccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcC---C------CCC-
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVN---V------PSG- 235 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~---~------p~~- 235 (345)
.+..+|||||||+|..+..+++..| +.+++++|+ |.+++.++ +++++.+|..+. + +..
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 4557999999999999999999988 789999999 77777654 689999998762 2 223
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
|+|++.. +......+++++.+.|+| ||.|++. +..
T Consensus 149 D~I~~d~-----~~~~~~~~l~~~~~~L~p---GG~lv~d-~~~ 183 (237)
T 3c3y_A 149 DFGFVDA-----DKPNYIKYHERLMKLVKV---GGIVAYD-NTL 183 (237)
T ss_dssp EEEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEE-CTT
T ss_pred CEEEECC-----chHHHHHHHHHHHHhcCC---CeEEEEe-cCC
Confidence 9998753 234457899999999999 9977766 544
No 201
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=98.82 E-value=1.6e-08 Score=89.04 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=75.5
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCC-CC-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNV-PS-G 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~-p~-~ 235 (345)
.++...+ .....+|||+|||+|.++..++++ ..+++++|. +.+++.++ +++++.+|+.+.. +. .
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 4555555 667789999999999999999998 679999998 77766554 6889999998855 53 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++ +.++. ..+|+++.+.|+| ||++++.
T Consensus 159 ~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~ 189 (248)
T 2yvl_A 159 FHAAFV-----DVREP--WHYLEKVHKSLME---GAPVGFL 189 (248)
T ss_dssp BSEEEE-----CSSCG--GGGHHHHHHHBCT---TCEEEEE
T ss_pred ccEEEE-----CCcCH--HHHHHHHHHHcCC---CCEEEEE
Confidence 99987 23333 3679999999999 9999998
No 202
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.82 E-value=4.4e-09 Score=95.19 Aligned_cols=100 Identities=11% Similarity=0.171 Sum_probs=74.6
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~ 234 (345)
...+++.++ .....+|||||||+|.++..++++.. +++++|+ +.+++.++ +++++.+|+.+ +++.
T Consensus 17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 345666666 66678999999999999999999854 7899998 77766543 58999999988 6665
Q ss_pred CCEEEeccccccCChhHHHHHHHH--------------H--HhhCCCCCCCcEEE
Q 044482 235 GQAIFTKSVLLNWSDEQCLKILKN--------------C--YDALPKSRKHGRTQ 273 (345)
Q Consensus 235 ~D~i~~~~vlh~~~d~~~~~iL~~--------------~--~~aL~p~~~gG~ll 273 (345)
-|+|++ +.-++|+.+....+|.. + +++++| ||+++
T Consensus 94 fD~vv~-nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkP---Gg~~y 144 (285)
T 1zq9_A 94 FDTCVA-NLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKP---GDKLY 144 (285)
T ss_dssp CSEEEE-ECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCT---TCTTC
T ss_pred hcEEEE-ecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCC---CCccc
Confidence 598887 44456666655566542 2 368999 98653
No 203
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.81 E-value=2.8e-09 Score=93.38 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=74.3
Q ss_pred ccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcC---CC-----CC-C
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVN---VP-----SG-Q 236 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~---~p-----~~-D 236 (345)
....+|||||||+|..+..+++..| +.+++++|. |.+++.|+ +++++.+|+.+. ++ .. |
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 3457999999999999999999987 689999999 77776654 689999998652 21 23 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
+|++... .+....+++++.+.|+| ||.|++. +...
T Consensus 151 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---gG~lv~~-~~~~ 185 (232)
T 3cbg_A 151 LIFIDAD-----KRNYPRYYEIGLNLLRR---GGLMVID-NVLW 185 (232)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTEEE---EEEEEEE-CTTG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEe-CCCc
Confidence 9987643 34456789999999999 9988887 6554
No 204
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=98.81 E-value=8.9e-09 Score=92.08 Aligned_cols=102 Identities=10% Similarity=-0.075 Sum_probs=72.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC-----------CceEE--eccCCcCCCCC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP-----------CVEHV--EGDMFVNVPSG 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~-----------ri~~~--~gd~~~~~p~~ 235 (345)
.+.+... +....+|||||||+|.++..++++ .+++++|+.+++..++ ++.++ .+|+.+-.+..
T Consensus 65 ~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~ 140 (265)
T 2oxt_A 65 WMEERGY-VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVER 140 (265)
T ss_dssp HHHHHTS-CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCC
T ss_pred HHHHcCC-CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCC
Confidence 3444422 556789999999999999999987 5899999955643221 47888 89998621333
Q ss_pred -CEEEeccccccCChh----H-HHHHHHHHHhhCCCCCCCc--EEEEEeccC
Q 044482 236 -QAIFTKSVLLNWSDE----Q-CLKILKNCYDALPKSRKHG--RTQLRSKRG 279 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~----~-~~~iL~~~~~aL~p~~~gG--~lli~~d~~ 279 (345)
|+|++... +...+. . ...+|+.+++.|+| || .+++- ...
T Consensus 141 fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~k-v~~ 187 (265)
T 2oxt_A 141 TDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVK---NPSADFVVK-VLC 187 (265)
T ss_dssp CSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEE-ESC
T ss_pred CcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEE-eCC
Confidence 99999766 433221 1 22489999999999 99 88876 543
No 205
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=98.81 E-value=4.3e-09 Score=91.70 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=72.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCC------CCeEEEeeh-hhHhhhCC--------------CceEEeccCCcCCCC-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP------QITGINFDL-PYVIKNAP--------------CVEHVEGDMFVNVPS- 234 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p------~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~~~p~- 234 (345)
.....+|||||||+|.++..+++..+ ..+++++|+ +.+++.++ +++++.+|..++++.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 44567999999999999999998765 368999998 77776554 588999999886653
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+ |+|++...+|++. +++.+.|+| ||++++.
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lvi~ 193 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLAS---GGRLIVP 193 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEE---EEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcC---CCEEEEE
Confidence 3 9999999998865 567889999 9999887
No 206
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=98.81 E-value=6.2e-09 Score=93.51 Aligned_cols=97 Identities=12% Similarity=0.089 Sum_probs=77.0
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC------------CceEEeccCCc-CC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP------------CVEHVEGDMFV-NV 232 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~-~~ 232 (345)
..+++.++ .....+|||+|||+|.++..+++. .|..+++++|. +.+++.++ +++++.+|+.+ ++
T Consensus 89 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 89 AQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 35666666 677789999999999999999996 57889999999 77655332 68899999987 45
Q ss_pred CC-C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 233 PS-G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 233 p~-~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+. . |+|++ +.++. ..+|+++++.|+| ||++++.
T Consensus 168 ~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~ 202 (280)
T 1i9g_A 168 PDGSVDRAVL-----DMLAP--WEVLDAVSRLLVA---GGVLMVY 202 (280)
T ss_dssp CTTCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEE
T ss_pred CCCceeEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEE
Confidence 53 3 99987 23333 2689999999999 9999998
No 207
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.80 E-value=1.5e-08 Score=92.39 Aligned_cols=93 Identities=15% Similarity=0.090 Sum_probs=67.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-----hhHhhhCC-------CceEEec-cCCcCCCC-CCEEEecc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-----PYVIKNAP-------CVEHVEG-DMFVNVPS-GQAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-----p~~i~~a~-------ri~~~~g-d~~~~~p~-~D~i~~~~ 242 (345)
+....+|||||||+|.++..++++ .+++++|+ +.+++..+ ++.++.+ |+.+..+. .|+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 455689999999999999999987 37889998 53333221 6899999 98863233 39999976
Q ss_pred ccc---cCChhH-HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VLL---NWSDEQ-CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh---~~~d~~-~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.++ ...+.. ...+|+.+++.|+| ||.+++.
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~k 190 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCVK 190 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEEE
Confidence 653 222222 22689999999999 9977664
No 208
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.80 E-value=2e-09 Score=96.87 Aligned_cols=94 Identities=15% Similarity=0.091 Sum_probs=72.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCC--C-CC-CEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNV--P-SG-QAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~--p-~~-D~i~~ 240 (345)
+..+|||||||+|.++..++++.|..+++++|+ |.+++.++ |++++.+|..+.+ + .. |+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 457999999999999999998777789999999 77776433 7899999988732 2 33 99998
Q ss_pred ccccccCChhH--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSDEQ--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
....+..+.+. ...+++++++.|+| ||.+++.
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~ 188 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ 188 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 65443322211 14689999999999 9988777
No 209
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.80 E-value=9.2e-09 Score=92.51 Aligned_cols=95 Identities=8% Similarity=-0.058 Sum_probs=69.6
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC-----------CceEE--eccCCcCCCCC-CEEEecc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP-----------CVEHV--EGDMFVNVPSG-QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~-----------ri~~~--~gd~~~~~p~~-D~i~~~~ 242 (345)
+....+|||||||+|.++..++++ .+++++|+.+++..++ +++++ .+|+.+-.+.. |+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 556789999999999999999987 5899999955643321 57888 99987611333 9999986
Q ss_pred ccccCChh----H-HHHHHHHHHhhCCCCCCCc--EEEEEeccC
Q 044482 243 VLLNWSDE----Q-CLKILKNCYDALPKSRKHG--RTQLRSKRG 279 (345)
Q Consensus 243 vlh~~~d~----~-~~~iL~~~~~aL~p~~~gG--~lli~~d~~ 279 (345)
. +...+. . ...+|+.+++.|+| || .+++. ...
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~-~~~ 195 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVK-VLN 195 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEE-ESC
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEE-eCC
Confidence 6 433221 1 22479999999999 99 88776 443
No 210
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.78 E-value=2.6e-09 Score=96.58 Aligned_cols=95 Identities=17% Similarity=0.065 Sum_probs=74.2
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCC---CCC-CEEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNV---PSG-QAIF 239 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~---p~~-D~i~ 239 (345)
....+|||||||+|.++..+++..|..+++++|+ |.+++.++ |++++.+|+.+.. +.. |+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 3557999999999999999998878889999999 77776543 6889999987622 333 9999
Q ss_pred eccccccCChhHH--HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVLLNWSDEQC--LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vlh~~~d~~~--~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+....+..+.+.. ..+++++++.|+| ||.+++.
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 8654443233222 5899999999999 9988877
No 211
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=98.77 E-value=3.6e-08 Score=88.91 Aligned_cols=95 Identities=9% Similarity=0.019 Sum_probs=68.3
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh--hhHhhhCC-------------------CceEEeccCCc---CC
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL--PYVIKNAP-------------------CVEHVEGDMFV---NV 232 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl--p~~i~~a~-------------------ri~~~~gd~~~---~~ 232 (345)
.....+|||||||+|.++..+++.. ..+++++|+ +.+++.++ +++++..|..+ .+
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3455799999999999999888753 348999999 56666543 25565444322 22
Q ss_pred ----C-CC-CEEEeccccccCChhHHHHHHHHHHhhCC---CCCCCcEEEEE
Q 044482 233 ----P-SG-QAIFTKSVLLNWSDEQCLKILKNCYDALP---KSRKHGRTQLR 275 (345)
Q Consensus 233 ----p-~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~---p~~~gG~lli~ 275 (345)
+ .. |+|++..++|+.++. ..+++.+++.|+ |+ +||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~~~--~~ll~~l~~~Lk~~~p~-~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQAH--DALLRSVKMLLALPAND-PTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGGGH--HHHHHHHHHHBCCTTTC-TTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccChHHH--HHHHHHHHHHhcccCCC-CCCEEEEE
Confidence 2 23 999999999885543 588999999999 62 27877665
No 212
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.77 E-value=8.6e-09 Score=89.64 Aligned_cols=88 Identities=13% Similarity=0.084 Sum_probs=72.3
Q ss_pred cccccceEEecCCccHHHHHHHHHC-----CCCeEEEeeh-hhHhhhCC--------------CceEEeccCCcCC----
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-----PQITGINFDL-PYVIKNAP--------------CVEHVEGDMFVNV---- 232 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-----p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~~~---- 232 (345)
.....+|||||||+|.++..+++.. |+.+++++|. +.+++.++ +++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4456799999999999999999986 6789999998 77766544 4889999998743
Q ss_pred C--CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 233 P--SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 233 p--~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+ .. |+|++...+|++ ++++++.|+| ||++++.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~ 192 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAE---NGKLIIP 192 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEE---EEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCC---CcEEEEE
Confidence 2 23 999999999865 4677899999 9998887
No 213
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=98.77 E-value=5e-09 Score=89.70 Aligned_cols=90 Identities=8% Similarity=-0.021 Sum_probs=69.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCC----C-C-CCEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNV----P-S-GQAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~----p-~-~D~i~~ 240 (345)
...+|||+|||+|.++..++++.. .+++++|+ +.+++.++ +++++.+|+.+.. + . -|+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 346899999999999999887653 58999999 78877654 4789999987621 1 3 499999
Q ss_pred ccccccCChhHHHHHHHHH--HhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSDEQCLKILKNC--YDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~--~~aL~p~~~gG~lli~ 275 (345)
...+| .. ....+++.+ .+.|+| ||.+++.
T Consensus 132 ~~~~~-~~--~~~~~l~~~~~~~~Lkp---gG~l~i~ 162 (201)
T 2ift_A 132 DPPFH-FN--LAEQAISLLCENNWLKP---NALIYVE 162 (201)
T ss_dssp CCCSS-SC--HHHHHHHHHHHTTCEEE---EEEEEEE
T ss_pred CCCCC-Cc--cHHHHHHHHHhcCccCC---CcEEEEE
Confidence 87765 33 345778888 567999 9998887
No 214
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.77 E-value=3.9e-09 Score=97.57 Aligned_cols=95 Identities=14% Similarity=0.045 Sum_probs=73.0
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcC---CCC-C-CEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVN---VPS-G-QAI 238 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~---~p~-~-D~i 238 (345)
....+|||||||+|.++..++++.|..+++++|+ +.+++.|+ |++++.+|+++. .+. . |+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 3557999999999999999999888889999999 77776543 689999998762 333 3 999
Q ss_pred EeccccccCChhH--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 239 FTKSVLLNWSDEQ--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 239 ~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++....+....+. ...+++++++.|+| ||.+++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9864422111111 35799999999999 9988876
No 215
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.76 E-value=2e-09 Score=106.79 Aligned_cols=98 Identities=13% Similarity=0.106 Sum_probs=77.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc---CCCCC--CEEEeccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV---NVPSG--QAIFTKSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~---~~p~~--D~i~~~~v 243 (345)
.+.+|||||||.|.++..+++. +.+++++|. +.+|+.|+ +++|..+|+.+ +.+++ |+|++..+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 4568999999999999999987 678999999 78887665 58899998865 23333 99999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
|||.+|++...-+.++.+.|++ +++.++. ..+..+
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~-~~~~~e 178 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLAD---VTQAVIL-ELAVKE 178 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHH---HSSEEEE-ECCCTT
T ss_pred hhcCCCHHHHHHHHHHHHHhcc---ccceeeE-Eecccc
Confidence 9999988755556667778888 7777776 555443
No 216
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.76 E-value=4.4e-09 Score=94.47 Aligned_cols=93 Identities=13% Similarity=0.052 Sum_probs=75.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcC-CCCC-CEEEecccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVN-VPSG-QAIFTKSVL 244 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~-~p~~-D~i~~~~vl 244 (345)
+....+|||+|||+|.++..++++.+..+++++|+ |.+++.++ +++++.+|+.+. .+.. |+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45667999999999999999999998889999999 88877665 578999999875 2223 999887553
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
....+++++.+.|+| ||.+++. +..
T Consensus 197 ------~~~~~l~~~~~~Lkp---gG~l~~s-~~~ 221 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKD---RGVIHYH-ETV 221 (272)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEE-EEE
T ss_pred ------cHHHHHHHHHHHcCC---CCEEEEE-EcC
Confidence 234689999999999 9999888 443
No 217
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.76 E-value=3.4e-09 Score=96.75 Aligned_cols=95 Identities=16% Similarity=0.055 Sum_probs=71.0
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcC--CC-CC-CEEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVN--VP-SG-QAIF 239 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~--~p-~~-D~i~ 239 (345)
.+..+|||||||+|.++..++++.|..+++++|+ |.+++.++ |++++.+|..+. .+ .. |+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4557999999999999999999888889999999 77776443 689999998762 22 23 9999
Q ss_pred eccccccCChh--HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVLLNWSDE--QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+....+.-+.. ....+++++++.|+| ||.+++.
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 208 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQ 208 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEe
Confidence 86544322211 124689999999999 9988877
No 218
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.76 E-value=5.1e-08 Score=91.52 Aligned_cols=119 Identities=9% Similarity=-0.002 Sum_probs=89.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCC-C-CEEEecc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPS-G-QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~-~-D~i~~~~ 242 (345)
+....+|||+|||+|.++..+++..+..+++++|+ +.+++.|+ +++++.+|+.+ +.+. . |+|+++-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 45668999999999999999999988778999999 88887766 68999999998 6553 3 9999975
Q ss_pred ccccCC------hhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHH
Q 044482 243 VLLNWS------DEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 243 vlh~~~------d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~ 316 (345)
..+... .+--..+++.+++.| + |+.+++. . +.+.++
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l-~---g~~~~i~-~---------------------------------~~~~~~ 336 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL-E---KRGVFIT-T---------------------------------EKKAIE 336 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE-E---EEEEEEE-S---------------------------------CHHHHH
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc-C---CeEEEEE-C---------------------------------CHHHHH
Confidence 543321 111257888999988 6 5545554 1 145567
Q ss_pred HHHHHCCCCceEEEecC
Q 044482 317 ALAMAAGFGTIKVICRS 333 (345)
Q Consensus 317 ~ll~~aGf~~~~~~~~~ 333 (345)
+.+++.||+..+...+.
T Consensus 337 ~~~~~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 337 EAIAENGFEIIHHRVIG 353 (373)
T ss_dssp HHHHHTTEEEEEEEEEE
T ss_pred HHHHHcCCEEEEEEEEE
Confidence 78999999998877663
No 219
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.75 E-value=3.3e-09 Score=97.26 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=69.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCC--C-CC-CEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNV--P-SG-QAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~--p-~~-D~i~~ 240 (345)
+..+|||||||+|..+..+++..|..+++++|+ |.+++.|+ |++++.+|+.+.+ + .. |+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 457999999999999999999888889999999 77776443 6889999987632 2 33 99998
Q ss_pred ccccccCChh-HH--HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSDE-QC--LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d~-~~--~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
...-+ +.+. .. ..+++++++.|+| ||.+++.
T Consensus 188 d~~~~-~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~ 221 (314)
T 2b2c_A 188 DSSDP-VGPAESLFGQSYYELLRDALKE---DGILSSQ 221 (314)
T ss_dssp CCC--------------HHHHHHHHEEE---EEEEEEE
T ss_pred cCCCC-CCcchhhhHHHHHHHHHhhcCC---CeEEEEE
Confidence 65433 3322 21 5899999999999 9988887
No 220
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.74 E-value=4.2e-09 Score=96.61 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=73.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------CceEEeccCCcCC--C-CC-CEEE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------CVEHVEGDMFVNV--P-SG-QAIF 239 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~~~--p-~~-D~i~ 239 (345)
...+|||||||+|.++..++++.|..+++++|+ |.+++.++ |++++.+|+.+.+ + .. |+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 457999999999999999999888889999999 77765432 6889999987632 2 33 9999
Q ss_pred ecccccc---CChhH--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVLLN---WSDEQ--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vlh~---~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+....|. -+.+. ...+++++++.|+| ||.+++.
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 194 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQ 194 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEE
Confidence 9766654 11111 25789999999999 9988887
No 221
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.74 E-value=4.2e-09 Score=96.92 Aligned_cols=93 Identities=16% Similarity=0.077 Sum_probs=72.1
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCC---CCC-CEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNV---PSG-QAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~---p~~-D~i~~ 240 (345)
+..+|||||||+|.++..+++..|..+++++|+ |.+++.++ |++++.+|+.+.. +.. |+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 457999999999999999998878889999999 77776543 6889999987632 233 99998
Q ss_pred ccccccCCh-hHH--HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSD-EQC--LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d-~~~--~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
...- .+.. +.. ..+++++++.|+| ||.+++.
T Consensus 196 d~~~-p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 229 (321)
T 2pt6_A 196 DSSD-PIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 229 (321)
T ss_dssp ECCC-SSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCcC-CCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 6432 2222 211 5889999999999 9988876
No 222
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.74 E-value=1.7e-08 Score=87.65 Aligned_cols=88 Identities=22% Similarity=0.141 Sum_probs=71.3
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC--------------CceEEeccCCcCCC-C-C-CE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP--------------CVEHVEGDMFVNVP-S-G-QA 237 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~~~p-~-~-D~ 237 (345)
.....+|||||||+|.++..+++.. |..+++++|+ +.+++.++ +++++.+|+....+ . . |+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3456799999999999999999885 6679999999 77776543 58899999876332 3 3 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|++...++++. +++++.|+| ||++++.
T Consensus 155 i~~~~~~~~~~--------~~~~~~Lkp---gG~lv~~ 181 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKP---GGRLILP 181 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEE---EEEEEEE
T ss_pred EEECCchHHHH--------HHHHHhcCC---CcEEEEE
Confidence 99999987654 577899999 9999887
No 223
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.73 E-value=3.5e-08 Score=93.94 Aligned_cols=105 Identities=10% Similarity=0.138 Sum_probs=79.6
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCCCceEEeccCCcCCC-CC-CEEEecc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAPCVEHVEGDMFVNVP-SG-QAIFTKS 242 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~ri~~~~gd~~~~~p-~~-D~i~~~~ 242 (345)
+..+++.++ .....+|||+|||+|.++..+++++ +..+++++|+ |.+++.|.+++++.+|+++..+ .. |+|+++-
T Consensus 28 ~~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~~~~~fD~Ii~NP 106 (421)
T 2ih2_A 28 VDFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLILGNP 106 (421)
T ss_dssp HHHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCCSSCEEEEEECC
T ss_pred HHHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcCccCCCCEEEECc
Confidence 334555554 3345699999999999999999987 6789999999 8888888889999999998444 34 9999952
Q ss_pred cc----------ccCChhHH-----------------HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VL----------LNWSDEQC-----------------LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vl----------h~~~d~~~-----------------~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
-. +|++++.. ..+++++.+.|+| ||+++++
T Consensus 107 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i 163 (421)
T 2ih2_A 107 PYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFV 163 (421)
T ss_dssp CCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEE
Confidence 21 11333322 2579999999999 9998887
No 224
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.71 E-value=2e-08 Score=85.53 Aligned_cols=85 Identities=11% Similarity=0.072 Sum_probs=64.9
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCcCCCCC-CEEEeccccccCChh
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFVNVPSG-QAIFTKSVLLNWSDE 250 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~ 250 (345)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.++ +++++.+|+.+ +|.. |+|++...+|++++.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCc
Confidence 345579999999999999999987 5557999999 88888776 68999999987 4444 999999999999875
Q ss_pred HHHHHHHHHHhhC
Q 044482 251 QCLKILKNCYDAL 263 (345)
Q Consensus 251 ~~~~iL~~~~~aL 263 (345)
...++++++.+.+
T Consensus 127 ~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 127 SDRAFIDKAFETS 139 (200)
T ss_dssp -CHHHHHHHHHHE
T ss_pred hhHHHHHHHHHhc
Confidence 5567888888875
No 225
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.70 E-value=7.5e-09 Score=94.15 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=69.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCC--C-CC-CEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNV--P-SG-QAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~--p-~~-D~i~~ 240 (345)
...+|||||||+|.++..+++..|..+++++|+ |.+++.++ |++++.+|+.+.+ + .. |+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 347999999999999999999878889999999 77766433 6899999987632 2 33 99997
Q ss_pred ccccccCChh---HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSDE---QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d~---~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
...-+..... ....+++++++.|+| ||.+++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 5332211111 115789999999999 9988877
No 226
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.68 E-value=2.4e-08 Score=92.72 Aligned_cols=94 Identities=11% Similarity=0.124 Sum_probs=77.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCC-----CeEEEeeh-hhHhhhCC--------CceEEeccCCcCCC-CC-CEEEecc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQ-----ITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVP-SG-QAIFTKS 242 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~-----~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p-~~-D~i~~~~ 242 (345)
...+|||+|||+|.++..+++..+. .+++++|+ |.+++.|+ +++++.+|.+++.+ .. |+|+++-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 4579999999999999999988765 68999999 77777766 58899999998655 33 9999998
Q ss_pred ccccCChhHH----------------HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VLLNWSDEQC----------------LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh~~~d~~~----------------~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+++++.++. ..+++++.+.|+| ||+++++
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v 255 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFL 255 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEE
Confidence 8777765542 2589999999999 9998888
No 227
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.68 E-value=2.5e-08 Score=89.61 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=73.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC---------CceEEeccCCc-CC-----CCC-CEE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NV-----PSG-QAI 238 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~-----p~~-D~i 238 (345)
.....+|||+|||+|..+..+++..++ .+++++|+ +.+++.++ +++++.+|+.+ +. +.. |+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 455679999999999999999999877 79999999 77766544 68899999876 32 333 999
Q ss_pred Eec------ccccc---CChh-------HHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 239 FTK------SVLLN---WSDE-------QCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 239 ~~~------~vlh~---~~d~-------~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
++. .+++. |+.+ ...++|+++.+.|+| ||++++. ...
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~s-tcs 213 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYS-TCS 213 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEE-ESC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEE-ECC
Confidence 986 23321 2222 126899999999999 9999887 543
No 228
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.68 E-value=3.5e-08 Score=87.17 Aligned_cols=87 Identities=15% Similarity=0.186 Sum_probs=64.8
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCC-CC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPS-GQ 236 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~-~D 236 (345)
...+++.++ .....+|||||||+|.++..++++. .+++++|+ +.+++.++ +++++.+|+.+ +++. .+
T Consensus 19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 445666666 6667899999999999999999986 68999998 77776554 78999999998 6664 35
Q ss_pred EEEeccccccCChhHHHHHH
Q 044482 237 AIFTKSVLLNWSDEQCLKIL 256 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL 256 (345)
..++.+.-++++.+....++
T Consensus 96 ~~vv~nlPy~~~~~~l~~~l 115 (244)
T 1qam_A 96 YKIFGNIPYNISTDIIRKIV 115 (244)
T ss_dssp CEEEEECCGGGHHHHHHHHH
T ss_pred eEEEEeCCcccCHHHHHHHH
Confidence 56666666665554444443
No 229
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.67 E-value=1.2e-08 Score=92.13 Aligned_cols=93 Identities=17% Similarity=0.154 Sum_probs=70.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC-----------------C--CceEEeccCCcCC--CCC-
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA-----------------P--CVEHVEGDMFVNV--PSG- 235 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a-----------------~--ri~~~~gd~~~~~--p~~- 235 (345)
...+|||||||+|.++..++++ |..+++++|+ |.+++.+ . |++++.+|..+.+ +..
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 4579999999999999999998 8889999999 7776532 2 6889999986522 333
Q ss_pred CEEEeccccccCChhH--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQ--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++....+..+.+. ...+++++++.|+| ||.+++.
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 192 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ 192 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 9999866543322222 25789999999999 9988776
No 230
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.66 E-value=2.9e-08 Score=92.86 Aligned_cols=90 Identities=16% Similarity=0.093 Sum_probs=68.3
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCC-CEEEeccccccC
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSG-QAIFTKSVLLNW 247 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~-D~i~~~~vlh~~ 247 (345)
.++|||||||+|.++...+++. ..+++++|..++++.|+ +|+++.+|+.+ .+|+. |+|++-+.-+.+
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l 162 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGL 162 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTTB
T ss_pred CCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccccc
Confidence 4689999999999987766653 34799999866766554 79999999988 77865 999885544333
Q ss_pred Chh-HHHHHHHHHHhhCCCCCCCcEEE
Q 044482 248 SDE-QCLKILKNCYDALPKSRKHGRTQ 273 (345)
Q Consensus 248 ~d~-~~~~iL~~~~~aL~p~~~gG~ll 273 (345)
-.+ ....++....+.|+| ||.++
T Consensus 163 ~~e~~l~~~l~a~~r~Lkp---~G~~i 186 (376)
T 4hc4_A 163 LHESMLSSVLHARTKWLKE---GGLLL 186 (376)
T ss_dssp TTTCSHHHHHHHHHHHEEE---EEEEE
T ss_pred cccchhhhHHHHHHhhCCC---CceEC
Confidence 333 345778888899999 88764
No 231
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.65 E-value=2.8e-08 Score=88.66 Aligned_cols=84 Identities=11% Similarity=-0.004 Sum_probs=69.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCCCCC-CEEEeccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNVPSG-QAIFTKSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~p~~-D~i~~~~v 243 (345)
+..+|||||||+|.++..+++. + .+++++|+ |.+++.|+ |++++.+|..+.. .. |+|++.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~d-- 146 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFCL-- 146 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEES--
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEEC--
Confidence 4579999999999999999988 7 89999999 88888765 5788999988743 43 999875
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+++. .+++++++.|+| ||.+++.
T Consensus 147 ---~~dp~--~~~~~~~~~L~p---gG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPDI--HRIDGLKRMLKE---DGVFISV 170 (262)
T ss_dssp ---SCCCH--HHHHHHHTTEEE---EEEEEEE
T ss_pred ---CCChH--HHHHHHHHhcCC---CcEEEEE
Confidence 34443 489999999999 9988776
No 232
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.65 E-value=1.6e-07 Score=87.58 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=94.9
Q ss_pred ccceEEecCCccHHHHHH--------HHHC-------CCCeEEEeehhhH--------hhhCC-----------------
Q 044482 180 LKKLVDVASCLGANMSLI--------VNTY-------PQITGINFDLPYV--------IKNAP----------------- 219 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l--------~~~~-------p~~~~~~~Dlp~~--------i~~a~----------------- 219 (345)
.-+|+|+|||+|..+..+ .+++ |++++..-|+|.- ++..+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 468999999999988877 3444 7889999998642 22210
Q ss_pred CceEEeccCCc-CCCCC--CEEEeccccccCCh------------------------------------hHHHHHHHHHH
Q 044482 220 CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSD------------------------------------EQCLKILKNCY 260 (345)
Q Consensus 220 ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d------------------------------------~~~~~iL~~~~ 260 (345)
=+.-++|.|.. .+|++ |+++++++||.+++ .+...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13456788888 77865 99999999998762 13456799999
Q ss_pred hhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhcc-chh-----hhhhc------------CCCccCCHHHHHHHHH-H
Q 044482 261 DALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTL-DIV-----MYDLF------------PQAKGRTAGEFKALAM-A 321 (345)
Q Consensus 261 ~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~-d~~-----~~~~~------------~~~~~rt~~e~~~ll~-~ 321 (345)
+.|+| ||++++. -.-.++. .+.........+ +.. -|+.. ---..++.+|++++++ +
T Consensus 213 ~eL~p---GG~mvl~-~~gr~~~-~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~ 287 (374)
T 3b5i_A 213 AEVKR---GGAMFLV-CLGRTSV-DPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDAN 287 (374)
T ss_dssp HHEEE---EEEEEEE-EEECCCS-STTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHH
T ss_pred HHhCC---CCEEEEE-EecCCCC-ccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhc
Confidence 99999 9999887 4333221 100000000111 110 01110 0113479999999998 5
Q ss_pred CCCCceEEEe
Q 044482 322 AGFGTIKVIC 331 (345)
Q Consensus 322 aGf~~~~~~~ 331 (345)
.||++.++..
T Consensus 288 ~~F~I~~le~ 297 (374)
T 3b5i_A 288 GSFAIDKLVV 297 (374)
T ss_dssp CSEEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 9999887643
No 233
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.64 E-value=4.1e-08 Score=94.50 Aligned_cols=106 Identities=12% Similarity=0.108 Sum_probs=80.3
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC---------CceEEeccCCc-C--CC-C
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP---------CVEHVEGDMFV-N--VP-S 234 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~--~p-~ 234 (345)
+...++ .....+|||+|||+|..+..+++..++ .+++++|+ +.+++.++ +++++.+|+.+ + ++ .
T Consensus 251 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 329 (450)
T 2yxl_A 251 ASIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEE 329 (450)
T ss_dssp HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSS
T ss_pred HHHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccC
Confidence 344445 556679999999999999999999887 79999999 66665443 68899999987 3 44 3
Q ss_pred C-CEEEe------ccccccCChh-------HH-------HHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 235 G-QAIFT------KSVLLNWSDE-------QC-------LKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 235 ~-D~i~~------~~vlh~~~d~-------~~-------~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
. |+|++ ..+++..++. +. ..+|+++.+.|+| ||++++. +...
T Consensus 330 ~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~-tcs~ 392 (450)
T 2yxl_A 330 VADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYT-TCSI 392 (450)
T ss_dssp CEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEE-ESCC
T ss_pred CCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEE-eCCC
Confidence 3 99996 3455544432 11 5789999999999 9999988 6543
No 234
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.61 E-value=1.2e-08 Score=90.02 Aligned_cols=102 Identities=13% Similarity=0.166 Sum_probs=76.3
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCC-CCE
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPS-GQA 237 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~-~D~ 237 (345)
..+++.++ .....+|||||||+|.++..++++. .+++++|+ +.+++.++ +++++.+|+.+ +++. +..
T Consensus 19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence 35566666 6667899999999999999999985 68999999 77877765 58899999988 6653 344
Q ss_pred EEeccccccCChhHHHHHH--------------HHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLLNWSDEQCLKIL--------------KNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL--------------~~~~~aL~p~~~gG~lli~ 275 (345)
+++.+.-++.+.+....++ +.+.+.|+| ||++.+.
T Consensus 96 ~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~ 144 (245)
T 1yub_A 96 KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLL 144 (245)
T ss_dssp EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHH
T ss_pred EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhh
Confidence 5555554555544444444 558899999 9987776
No 235
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.56 E-value=1.1e-07 Score=87.80 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=69.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCC------CCC-CEEE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNV------PSG-QAIF 239 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~------p~~-D~i~ 239 (345)
...+|||+|||+|.++..+++... +++++|+ +.+++.++ +++++.+|+++.. ... |+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 346899999999999999998643 8999999 78877665 2899999998732 223 9999
Q ss_pred eccc---------cccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSV---------LLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~v---------lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+.-- ++++ .+....+++++.+.|+| ||.+++.
T Consensus 231 ~dPP~~~~~~~~~~~~~-~~~~~~ll~~~~~~Lkp---gG~lli~ 271 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQL-FDHLPLMLDICREILSP---KALGLVL 271 (332)
T ss_dssp ECCCSEEECTTCCEEEH-HHHHHHHHHHHHHTBCT---TCCEEEE
T ss_pred ECCccccCCchHHHHHH-HHHHHHHHHHHHHhcCc---CcEEEEE
Confidence 8422 1111 22346899999999999 9987776
No 236
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.55 E-value=1.7e-07 Score=84.67 Aligned_cols=116 Identities=10% Similarity=0.049 Sum_probs=81.5
Q ss_pred cccccceEEecC------CccHHHHHHHHHCC-CCeEEEeehhhHhhhCCCceE-EeccCCc-CCCCC-CEEEecccccc
Q 044482 177 FKELKKLVDVAS------CLGANMSLIVNTYP-QITGINFDLPYVIKNAPCVEH-VEGDMFV-NVPSG-QAIFTKSVLLN 246 (345)
Q Consensus 177 ~~~~~~vlDiGg------G~G~~~~~l~~~~p-~~~~~~~Dlp~~i~~a~ri~~-~~gd~~~-~~p~~-D~i~~~~vlh~ 246 (345)
.....+|||||| |+|. ..+++..| +.+++++|+.+.+ .++++ +.+|+.+ +++.. |+|++....+.
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v---~~v~~~i~gD~~~~~~~~~fD~Vvsn~~~~~ 135 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV---SDADSTLIGDCATVHTANKWDLIISDMYDPR 135 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB---CSSSEEEESCGGGCCCSSCEEEEEECCCCCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC---CCCEEEEECccccCCccCcccEEEEcCCccc
Confidence 566789999999 4477 55566776 6899999994433 47899 9999988 44444 99998533211
Q ss_pred ---C--C----hhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHH
Q 044482 247 ---W--S----DEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKA 317 (345)
Q Consensus 247 ---~--~----d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ 317 (345)
+ + .+....+|+++++.|+| ||++++. ..... ...++.+
T Consensus 136 ~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~-~~~~~-----------------------------~~~~l~~ 182 (290)
T 2xyq_A 136 TKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVK-ITEHS-----------------------------WNADLYK 182 (290)
T ss_dssp ---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEE-ECSSS-----------------------------CCHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHhcCC---CcEEEEE-EeccC-----------------------------CHHHHHH
Confidence 1 1 22345799999999999 9999886 32110 1236778
Q ss_pred HHHHCCCCceEEE
Q 044482 318 LAMAAGFGTIKVI 330 (345)
Q Consensus 318 ll~~aGf~~~~~~ 330 (345)
++++.||..+++.
T Consensus 183 ~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 183 LMGHFSWWTAFVT 195 (290)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHHHcCCcEEEEE
Confidence 8888888877665
No 237
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.54 E-value=1.2e-07 Score=86.20 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=67.5
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~ 235 (345)
...+++.++ .....+|||||||+|.++..++++ ..+++++|+ +.+++.++ +++++.+|+.+ +.+.-
T Consensus 31 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 31 LDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 344555555 566789999999999999999987 358999999 77776544 68999999987 55444
Q ss_pred CEEEeccccccCChhHHHHHH---------------HHHHhhCCC
Q 044482 236 QAIFTKSVLLNWSDEQCLKIL---------------KNCYDALPK 265 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL---------------~~~~~aL~p 265 (345)
|+|+++ .-++|+.+...++| ..+.+.+++
T Consensus 108 D~Vv~n-~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~ 151 (299)
T 2h1r_A 108 DVCTAN-IPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLAN 151 (299)
T ss_dssp SEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCC
T ss_pred CEEEEc-CCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcC
Confidence 998875 45567777766777 335677877
No 238
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.53 E-value=2e-07 Score=89.20 Aligned_cols=106 Identities=13% Similarity=0.174 Sum_probs=79.8
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-C--CCC-C-
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-N--VPS-G- 235 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~--~p~-~- 235 (345)
+...++ .....+|||+|||+|..+..+++..|+.+++++|+ +..++.++ +++++.+|+.+ + ++. .
T Consensus 238 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~f 316 (429)
T 1sqg_A 238 CMTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQF 316 (429)
T ss_dssp HHHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCE
T ss_pred HHHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCC
Confidence 344444 45667999999999999999999999889999998 66666544 57899999987 3 343 3
Q ss_pred CEEEe------ccccccCCh-------hHH-------HHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 236 QAIFT------KSVLLNWSD-------EQC-------LKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 236 D~i~~------~~vlh~~~d-------~~~-------~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
|+|++ ..++++.++ ++. ..+|+++.+.|+| ||++++. +...
T Consensus 317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvys-tcs~ 377 (429)
T 1sqg_A 317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYA-TCSV 377 (429)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEE-ESCC
T ss_pred CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE-ECCC
Confidence 99986 244544433 222 4889999999999 9999988 6443
No 239
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.50 E-value=3.1e-07 Score=78.40 Aligned_cols=84 Identities=11% Similarity=-0.018 Sum_probs=68.2
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCCC-CEEEeccccccC
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPSG-QAIFTKSVLLNW 247 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~~-D~i~~~~vlh~~ 247 (345)
....+|||+|||+|.++..+++..+ .+++++|+ +.+++.++ +++++.+|+.+ ++.. |+|++.-.+|.+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGSQ 125 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCccc
Confidence 3457999999999999999998743 47999999 77877665 58899999887 3434 999999999888
Q ss_pred ChhHHHHHHHHHHhhC
Q 044482 248 SDEQCLKILKNCYDAL 263 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL 263 (345)
......++|+++.+.+
T Consensus 126 ~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 126 RKHADRPFLLKAFEIS 141 (207)
T ss_dssp STTTTHHHHHHHHHHC
T ss_pred cCCchHHHHHHHHHhc
Confidence 7655567889888886
No 240
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.49 E-value=1.5e-06 Score=80.58 Aligned_cols=148 Identities=18% Similarity=0.134 Sum_probs=92.4
Q ss_pred cccceEEecCCccHHHHHHHHH----------------CCCCeEEEeehhhH--------hhhC----C--CceEEeccC
Q 044482 179 ELKKLVDVASCLGANMSLIVNT----------------YPQITGINFDLPYV--------IKNA----P--CVEHVEGDM 228 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~----------------~p~~~~~~~Dlp~~--------i~~a----~--ri~~~~gd~ 228 (345)
+.-+|+|+||++|..+..+... .|+++++.-|+|.- +..- + -+.-++|.|
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 4568999999999766554433 57788999999741 2210 1 244567889
Q ss_pred Cc-CCCCC--CEEEeccccccCCh-------------------------------hHHHHHHHHHHhhCCCCCCCcEEEE
Q 044482 229 FV-NVPSG--QAIFTKSVLLNWSD-------------------------------EQCLKILKNCYDALPKSRKHGRTQL 274 (345)
Q Consensus 229 ~~-~~p~~--D~i~~~~vlh~~~d-------------------------------~~~~~iL~~~~~aL~p~~~gG~lli 274 (345)
.. .+|++ |+++.++.||.+++ .+...+|+..++.|+| ||++++
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mvl 207 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMVL 207 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEEE
Confidence 88 78865 99999999997654 1334669999999999 999988
Q ss_pred EeccCCCCCCC-Cch----h-hhhhhccchhhhhh---------cCCCccCCHHHHHHHHHHCC-CCceEEE
Q 044482 275 RSKRGLPESPE-FSS----I-NRNILTLDIVMYDL---------FPQAKGRTAGEFKALAMAAG-FGTIKVI 330 (345)
Q Consensus 275 ~~d~~~~~~~~-~~~----~-~~~~~~~d~~~~~~---------~~~~~~rt~~e~~~ll~~aG-f~~~~~~ 330 (345)
. -.-.++... ... . .....+.|+..--. ..--..++.+|++++++++| |++.+..
T Consensus 208 ~-~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 208 T-ILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp E-EEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred E-EecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence 7 443332210 000 0 00001111100000 00113578999999999996 4776653
No 241
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.45 E-value=2.1e-07 Score=89.35 Aligned_cols=99 Identities=8% Similarity=0.044 Sum_probs=75.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC--------CceEEeccCCc-C--CCCC-CEEEe--
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP--------CVEHVEGDMFV-N--VPSG-QAIFT-- 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~--~p~~-D~i~~-- 240 (345)
.....+|||+|||+|..+..+++..++ .+++++|+ +.+++.++ .++++.+|+.+ + .+.. |+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECC
Confidence 456689999999999999999999875 78999999 77777665 37888899876 2 2333 99996
Q ss_pred -----------ccccccCChhHH-------HHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 241 -----------KSVLLNWSDEQC-------LKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 241 -----------~~vlh~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
..+...|+.+.. .++|+++.+.|+| ||+|+.. ...
T Consensus 179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~Lvys-TCs 231 (464)
T 3m6w_A 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYS-TCT 231 (464)
T ss_dssp CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEE-ESC
T ss_pred CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEE-ecc
Confidence 222334544433 6799999999999 9999886 443
No 242
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.45 E-value=1.7e-07 Score=84.05 Aligned_cols=117 Identities=13% Similarity=0.048 Sum_probs=84.9
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC--CEEEeccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG--QAIFTKSV 243 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~--D~i~~~~v 243 (345)
+....+|||+|||+|.++..++++. ..+++.+|+ |..++.++ +++++.+|..+-.+++ |.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 3466899999999999999998774 568999999 77766554 6899999998744433 98887633
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAG 323 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aG 323 (345)
- .+...|..+.+.|+| ||.|.+. +.+..+.. .....+.++++.++.|
T Consensus 202 ~------~~~~~l~~a~~~lk~---gG~ih~~-~~~~e~~~-----------------------~~~~~e~i~~~~~~~g 248 (278)
T 3k6r_A 202 V------RTHEFIPKALSIAKD---GAIIHYH-NTVPEKLM-----------------------PREPFETFKRITKEYG 248 (278)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEE-EEEEGGGT-----------------------TTTTHHHHHHHHHHTT
T ss_pred C------cHHHHHHHHHHHcCC---CCEEEEE-eeeccccc-----------------------chhHHHHHHHHHHHcC
Confidence 1 123578888899999 9988777 55422110 1123566788899999
Q ss_pred CCce
Q 044482 324 FGTI 327 (345)
Q Consensus 324 f~~~ 327 (345)
+++.
T Consensus 249 ~~v~ 252 (278)
T 3k6r_A 249 YDVE 252 (278)
T ss_dssp CEEE
T ss_pred CcEE
Confidence 8753
No 243
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.44 E-value=6.5e-07 Score=86.58 Aligned_cols=98 Identities=23% Similarity=0.271 Sum_probs=75.0
Q ss_pred cccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC---------CceEEeccCCc-C--CCCC-CEEEec--
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP---------CVEHVEGDMFV-N--VPSG-QAIFTK-- 241 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~--~p~~-D~i~~~-- 241 (345)
...+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++ +++++.+|+.+ + .+.. |+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 567999999999999999999875 578999999 77776554 68899999887 3 3333 999872
Q ss_pred ----cc-------cccCChhH-------HHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 242 ----SV-------LLNWSDEQ-------CLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 242 ----~v-------lh~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
.+ .++|+.++ ..++|+++.+.|+| ||+|++. ....
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~Lvys-Tcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYS-TCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE-ESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEe-cccC
Confidence 22 23455443 24789999999999 9999887 5543
No 244
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.43 E-value=4.4e-07 Score=85.59 Aligned_cols=107 Identities=7% Similarity=-0.024 Sum_probs=76.9
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ--------------------------------------ITGIN 208 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~--------------------------------------~~~~~ 208 (345)
+..++.... |....+|||.+||+|.+++..+....+ .++++
T Consensus 190 Aa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 190 AAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 344556555 877889999999999999988875433 56999
Q ss_pred eeh-hhHhhhCC----------CceEEeccCCc-CCCCC-CEEEecccccc-C-ChhHHHHHHHHHHhhCCCCCCCcEEE
Q 044482 209 FDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG-QAIFTKSVLLN-W-SDEQCLKILKNCYDALPKSRKHGRTQ 273 (345)
Q Consensus 209 ~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~-D~i~~~~vlh~-~-~d~~~~~iL~~~~~aL~p~~~gG~ll 273 (345)
+|+ +.+++.|+ +++++.+|+++ +.+.. |+|+++--.+. . ..++...+.+.+.+.|++ -+|++++
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~ 347 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPTWSVY 347 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-CTTCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc-CCCCEEE
Confidence 999 88888766 58999999998 44444 99998833321 1 224455667766666654 2388888
Q ss_pred EE
Q 044482 274 LR 275 (345)
Q Consensus 274 i~ 275 (345)
|+
T Consensus 348 ii 349 (393)
T 3k0b_A 348 VL 349 (393)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 245
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.42 E-value=6.5e-07 Score=83.68 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=92.9
Q ss_pred ccceEEecCCccHHHHHHHHH-----------------CCCCeEEEeehhh--------Hhhh---------C---C--C
Q 044482 180 LKKLVDVASCLGANMSLIVNT-----------------YPQITGINFDLPY--------VIKN---------A---P--C 220 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~-----------------~p~~~~~~~Dlp~--------~i~~---------a---~--r 220 (345)
.-+|+|+||++|..+..++.. .|+++++.-|+|. .++. . . =
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999999888766 5788999999981 1111 1 1 2
Q ss_pred ceEEeccCCc-CCCCC--CEEEeccccccCChh-------------------------HH------------HHHHHHHH
Q 044482 221 VEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDE-------------------------QC------------LKILKNCY 260 (345)
Q Consensus 221 i~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~-------------------------~~------------~~iL~~~~ 260 (345)
+.-++|.|+. .+|++ |+++++++||.+++. .+ ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888 78865 999999999976532 12 23488889
Q ss_pred hhCCCCCCCcEEEEEeccCCCCCC-CCchh-hhhhhccchhh--------hhhc-CCCccCCHHHHHHHHHHCC-CCceE
Q 044482 261 DALPKSRKHGRTQLRSKRGLPESP-EFSSI-NRNILTLDIVM--------YDLF-PQAKGRTAGEFKALAMAAG-FGTIK 328 (345)
Q Consensus 261 ~aL~p~~~gG~lli~~d~~~~~~~-~~~~~-~~~~~~~d~~~--------~~~~-~~~~~rt~~e~~~ll~~aG-f~~~~ 328 (345)
+.|+| ||++++. -.-.++.. .+... .....+.++.. +..+ .--..++.+|++++++++| |++.+
T Consensus 213 ~eL~p---GG~mvl~-~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~ 288 (384)
T 2efj_A 213 EELIS---RGRMLLT-FICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILY 288 (384)
T ss_dssp HHEEE---EEEEEEE-EECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEE
T ss_pred HHhcc---CCeEEEE-EecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEE
Confidence 99999 9999888 44333220 11100 00111111110 0000 0123479999999999985 78776
Q ss_pred EE
Q 044482 329 VI 330 (345)
Q Consensus 329 ~~ 330 (345)
+.
T Consensus 289 le 290 (384)
T 2efj_A 289 LE 290 (384)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 246
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=98.41 E-value=2.2e-06 Score=78.94 Aligned_cols=142 Identities=9% Similarity=0.016 Sum_probs=101.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhC------------------------------CCceEEeccC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNA------------------------------PCVEHVEGDM 228 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a------------------------------~ri~~~~gd~ 228 (345)
+...||.+|||.....-.+...+|+++++-+|+|++++.. .+..+++.|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 4578999999999999999999899999999999886532 2578999999
Q ss_pred Cc-CC--------C--CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhcc
Q 044482 229 FV-NV--------P--SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTL 296 (345)
Q Consensus 229 ~~-~~--------p--~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~ 296 (345)
.+ .+ + +. .++++-.+|++++.+++.++|+.+.+.. | +|.+++. |.+.+..+...........+
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~---~~~~v~~-e~i~~~~~~~~fg~~m~~~l 251 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S---HGLWISY-DPIGGSQPNDRFGAIMQSNL 251 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S---SEEEEEE-EECCCCSTTCCHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C---CcEEEEE-eccCCCCCcchHHHHHHHHh
Confidence 87 32 1 22 6888889999999999999999999987 6 7888889 99877332221110000000
Q ss_pred ch-hhhhhcCCCccCCHHHHHHHHHHCCCC
Q 044482 297 DI-VMYDLFPQAKGRTAGEFKALAMAAGFG 325 (345)
Q Consensus 297 d~-~~~~~~~~~~~rt~~e~~~ll~~aGf~ 325 (345)
.- .-..+.......+.++..+.|.++||+
T Consensus 252 ~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 252 KESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred hcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 00 000011012346889999999999997
No 247
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.40 E-value=1.3e-06 Score=82.03 Aligned_cols=107 Identities=10% Similarity=-0.002 Sum_probs=79.5
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ--------------------------------------ITGIN 208 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~--------------------------------------~~~~~ 208 (345)
+..++.... |.....|+|.+||+|.+++..+....+ .++++
T Consensus 183 Aaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G 261 (384)
T 3ldg_A 183 AAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG 261 (384)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 344555555 777889999999999999988865433 56999
Q ss_pred eeh-hhHhhhCC----------CceEEeccCCc-CCCCC-CEEEeccccc-cC-ChhHHHHHHHHHHhhCCCCCCCcEEE
Q 044482 209 FDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG-QAIFTKSVLL-NW-SDEQCLKILKNCYDALPKSRKHGRTQ 273 (345)
Q Consensus 209 ~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~-D~i~~~~vlh-~~-~d~~~~~iL~~~~~aL~p~~~gG~ll 273 (345)
+|+ +.+++.|+ +++++.+|+++ +.+.. |+|+++--.+ -+ +.++...+.+++.+.|++ -+|+++.
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~ 340 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKTWSQF 340 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT-CTTSEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh-CCCcEEE
Confidence 999 88887766 58999999998 44444 9999873332 12 345667788888888775 3488888
Q ss_pred EE
Q 044482 274 LR 275 (345)
Q Consensus 274 i~ 275 (345)
|+
T Consensus 341 ii 342 (384)
T 3ldg_A 341 IL 342 (384)
T ss_dssp EE
T ss_pred EE
Confidence 88
No 248
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.40 E-value=6.6e-07 Score=81.02 Aligned_cols=87 Identities=11% Similarity=0.137 Sum_probs=64.5
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC--
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG-- 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~-- 235 (345)
...+++..+ .....+|||||||+|.++..++++ ..+++++|+ +.+++.++ +++++.+|+.+ ++++.
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 345666666 666789999999999999999998 468999998 77777655 78999999998 77653
Q ss_pred CEEEeccccccCChhHHHHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILK 257 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~ 257 (345)
|+|+.+ .-++++.+-..++|+
T Consensus 116 D~Iv~N-lPy~is~pil~~lL~ 136 (295)
T 3gru_A 116 NKVVAN-LPYQISSPITFKLIK 136 (295)
T ss_dssp SEEEEE-CCGGGHHHHHHHHHH
T ss_pred cEEEEe-CcccccHHHHHHHHh
Confidence 888855 334455544344443
No 249
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.36 E-value=1.1e-06 Score=78.66 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=66.3
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCc-CCCC--CCE
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFV-NVPS--GQA 237 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~-~~p~--~D~ 237 (345)
..+++..+ .... +|||||||+|.++..++++. .+++++|+ +.+++.++ +++++.+|+++ ++++ ...
T Consensus 37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~ 112 (271)
T 3fut_A 37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGS 112 (271)
T ss_dssp HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTE
T ss_pred HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCcc
Confidence 35666666 5666 99999999999999999985 57899998 77777654 79999999998 6663 334
Q ss_pred EEeccccccCChhHHHHHHHH
Q 044482 238 IFTKSVLLNWSDEQCLKILKN 258 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~ 258 (345)
.++.|.-++.+.+-..++|..
T Consensus 113 ~iv~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 113 LLVANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEEEECSSCCHHHHHHHHHH
T ss_pred EEEecCcccccHHHHHHHhcC
Confidence 566677777787766666654
No 250
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.33 E-value=9.2e-07 Score=78.20 Aligned_cols=89 Identities=17% Similarity=0.138 Sum_probs=66.3
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCCc-CCCC--CCE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMFV-NVPS--GQA 237 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~-~~p~--~D~ 237 (345)
...+++..+ .....+|||||||+|.++..++++ +..+++++|+ +.+++.++ +++++.+|+++ ++++ ++.
T Consensus 20 ~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 20 LKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 345666666 666789999999999999999987 4578999999 77777654 68999999998 6663 256
Q ss_pred EEeccccccCChhHHHHHHH
Q 044482 238 IFTKSVLLNWSDEQCLKILK 257 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~ 257 (345)
+++.+.-++.+.+-..++|+
T Consensus 98 ~vv~NlPy~i~~~il~~ll~ 117 (249)
T 3ftd_A 98 KVVGNLPYNVASLIIENTVY 117 (249)
T ss_dssp EEEEECCTTTHHHHHHHHHH
T ss_pred EEEEECchhccHHHHHHHHh
Confidence 67777766665554444443
No 251
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.32 E-value=4.9e-07 Score=86.70 Aligned_cols=100 Identities=13% Similarity=0.133 Sum_probs=73.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC---------CceEEeccCCc-C--CCCC-CEEEec
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP---------CVEHVEGDMFV-N--VPSG-QAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~--~p~~-D~i~~~ 241 (345)
.....+|||+|||+|..+..+++..++ .+++.+|+ +..++.++ ++.++.+|..+ + .+.. |+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 456689999999999999999998654 78999999 77766554 68888999876 2 3333 999873
Q ss_pred c------ccc-------cCChhHH-------HHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 242 S------VLL-------NWSDEQC-------LKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 242 ~------vlh-------~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
- ++. .|+.+.. .++|+++.+.|+| ||+|+.. ....
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYs-TCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYS-TCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEE-ESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEE-Eeec
Confidence 2 222 2332221 3789999999999 9998887 5433
No 252
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.31 E-value=1.4e-06 Score=81.90 Aligned_cols=107 Identities=17% Similarity=0.075 Sum_probs=78.2
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCC--------------------------------------CCeEEE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP--------------------------------------QITGIN 208 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p--------------------------------------~~~~~~ 208 (345)
+..++.... |....+|||.+||+|.+++.++.... ..++++
T Consensus 184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 344556555 87788999999999999999887632 257999
Q ss_pred eeh-hhHhhhCC----------CceEEeccCCc-CCCCC-CEEEecccccc-CC-hhHHHHHHHHHHhhCCCCCCCcEEE
Q 044482 209 FDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG-QAIFTKSVLLN-WS-DEQCLKILKNCYDALPKSRKHGRTQ 273 (345)
Q Consensus 209 ~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~-D~i~~~~vlh~-~~-d~~~~~iL~~~~~aL~p~~~gG~ll 273 (345)
+|+ +.+++.|+ ++++..+|+++ +.+.. |+|+++--... +. .++...+.+++.+.|++ -+|++++
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~ 341 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKNWSYY 341 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-SBSCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh-CCCCEEE
Confidence 999 88888776 58999999998 44444 99999644322 22 34556777777777765 3377887
Q ss_pred EE
Q 044482 274 LR 275 (345)
Q Consensus 274 i~ 275 (345)
|+
T Consensus 342 ii 343 (385)
T 3ldu_A 342 LI 343 (385)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 253
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.30 E-value=4.3e-07 Score=85.89 Aligned_cols=93 Identities=12% Similarity=0.093 Sum_probs=71.1
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCC------CCC-CEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNV------PSG-QAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~------p~~-D~i~~ 240 (345)
...+|||+|||+|.++..+++. +..+++++|+ +.+++.++ +++++.+|+++.. ... |+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5579999999999999999986 4458999999 77777655 5889999998732 223 99998
Q ss_pred ccccccCCh-------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSD-------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.--....+. .....+++++.+.|+| ||.+++.
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~ 334 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTC 334 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEE
Confidence 532222221 3456789999999999 9988887
No 254
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.29 E-value=4e-07 Score=85.69 Aligned_cols=92 Identities=12% Similarity=0.054 Sum_probs=71.3
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCC------CCC-CEEEec
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNV------PSG-QAIFTK 241 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~------p~~-D~i~~~ 241 (345)
...+|||+|||+|.++..+++. ..+++++|+ +.+++.++ +++++.+|+++.. +.. |+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5579999999999999999998 568999999 78887666 4899999998732 223 999984
Q ss_pred cccccCCh-------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 242 SVLLNWSD-------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 242 ~vlh~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
--....+. +....+++++.+.|+| ||.+++.
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 324 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATA 324 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 32222111 3446799999999999 9998888
No 255
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.23 E-value=7.7e-07 Score=85.44 Aligned_cols=104 Identities=14% Similarity=0.093 Sum_probs=75.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHC-------------CCCeEEEeeh-hhHhhhCC-----------Cce
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-------------PQITGINFDL-PYVIKNAP-----------CVE 222 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-------------p~~~~~~~Dl-p~~i~~a~-----------ri~ 222 (345)
..+++.+. .....+|+|.|||+|.++..+++.. +..+++++|+ |.+++.|+ +++
T Consensus 161 ~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~ 239 (445)
T 2okc_A 161 QAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 239 (445)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred HHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 34445444 3455799999999999999988763 4567999999 77776654 357
Q ss_pred EEeccCCc-CCCCC-CEEEeccccccCChh---------------HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 223 HVEGDMFV-NVPSG-QAIFTKSVLLNWSDE---------------QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 223 ~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~---------------~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+..+|.+. +.... |+|+++-.++..... .-..+++++.+.|+| ||++.++
T Consensus 240 i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V 306 (445)
T 2okc_A 240 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVV 306 (445)
T ss_dssp EEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred EeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEE
Confidence 89999988 33334 999998665542211 124789999999999 9999888
No 256
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.22 E-value=1.2e-06 Score=77.51 Aligned_cols=87 Identities=11% Similarity=0.044 Sum_probs=61.7
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCC---
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPS--- 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~--- 234 (345)
...+++.++ .....+|||||||+|.++. +. +.++.+++++|+ +.+++.++ +++++.+|+.+ ++++
T Consensus 10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 445666666 6667899999999999999 54 555445999998 78877554 68999999988 5542
Q ss_pred ---CCEEEeccccccCChhHHHHHH
Q 044482 235 ---GQAIFTKSVLLNWSDEQCLKIL 256 (345)
Q Consensus 235 ---~D~i~~~~vlh~~~d~~~~~iL 256 (345)
.+.+++++.-++.+.+...++|
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2456666666666555444444
No 257
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.20 E-value=9.2e-07 Score=81.73 Aligned_cols=86 Identities=13% Similarity=0.076 Sum_probs=67.8
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCCCEEEecccccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSGQAIFTKSVLLN 246 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~D~i~~~~vlh~ 246 (345)
....+|||+|||+|.++.. ++ +..+++++|+ |.+++.++ +++++.+|+++.....|+|++.-.-
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~-- 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPK-- 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTT--
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcH--
Confidence 3557999999999999999 76 4678999999 77777654 5899999998844223999985211
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
....+++.+.+.|+| ||.+++.
T Consensus 269 ----~~~~~l~~~~~~L~~---gG~l~~~ 290 (336)
T 2yx1_A 269 ----FAHKFIDKALDIVEE---GGVIHYY 290 (336)
T ss_dssp ----TGGGGHHHHHHHEEE---EEEEEEE
T ss_pred ----hHHHHHHHHHHHcCC---CCEEEEE
Confidence 123789999999999 9988888
No 258
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.19 E-value=1.5e-06 Score=81.84 Aligned_cols=92 Identities=12% Similarity=0.111 Sum_probs=68.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCC---CCC-CEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNV---PSG-QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~---p~~-D~i~~~~vlh 245 (345)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.++ ..++..+|+++.+ +.. |+|++.--..
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 36799999999999999999874 44999999 88888776 2357789998732 233 9998854321
Q ss_pred cCCh-------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 246 NWSD-------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..+. ..-.++++++.+.|+| ||.+++.
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~ 325 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLS 325 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 1111 1235789999999999 9999877
No 259
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.19 E-value=9.9e-07 Score=79.26 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=52.8
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCC--CeEEEeeh-hhHhhhCC-----CceEEeccCCc-CCC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ--ITGINFDL-PYVIKNAP-----CVEHVEGDMFV-NVP 233 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~--~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~-~~p 233 (345)
..+++.++ .....+|||||||+|.++..++++.+. .+++++|+ +.+++.++ +++++.+|+++ +++
T Consensus 32 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 32 DAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 34566666 666789999999999999999998764 56999998 88887665 78999999988 555
No 260
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.18 E-value=4.3e-06 Score=79.96 Aligned_cols=95 Identities=9% Similarity=0.169 Sum_probs=66.7
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-----
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP----- 233 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p----- 233 (345)
.+++.++ .....+|||+|||+|.++..+++. ..+++++|. +.+++.|+ +++|+.+|+.+.++
T Consensus 277 ~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~ 353 (433)
T 1uwv_A 277 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 353 (433)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG
T ss_pred HHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhh
Confidence 4445554 555679999999999999999987 568999999 78887665 68999999987332
Q ss_pred C-C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 S-G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 ~-~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. . |+|++.--- ..+..+++.+.+ ++| ++.+++.
T Consensus 354 ~~~fD~Vv~dPPr-----~g~~~~~~~l~~-~~p---~~ivyvs 388 (433)
T 1uwv_A 354 KNGFDKVLLDPAR-----AGAAGVMQQIIK-LEP---IRIVYVS 388 (433)
T ss_dssp TTCCSEEEECCCT-----TCCHHHHHHHHH-HCC---SEEEEEE
T ss_pred cCCCCEEEECCCC-----ccHHHHHHHHHh-cCC---CeEEEEE
Confidence 2 2 999874222 112245555543 688 6655555
No 261
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.17 E-value=1.6e-06 Score=76.80 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=59.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCC---
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPS--- 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~--- 234 (345)
...+++..+ .....+|||||||+|.++..++++. .+++++|+ +.+++.++ +++++.+|+++ ++++
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 94 (255)
T 3tqs_A 18 LQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKT 94 (255)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhcc
Confidence 345666666 6667899999999999999999875 58999998 77877654 78999999998 5542
Q ss_pred -CCEEEeccccccCChh
Q 044482 235 -GQAIFTKSVLLNWSDE 250 (345)
Q Consensus 235 -~D~i~~~~vlh~~~d~ 250 (345)
+...++.|.=++.+.+
T Consensus 95 ~~~~~vv~NlPY~is~~ 111 (255)
T 3tqs_A 95 DKPLRVVGNLPYNISTP 111 (255)
T ss_dssp SSCEEEEEECCHHHHHH
T ss_pred CCCeEEEecCCcccCHH
Confidence 2333444444444443
No 262
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.14 E-value=3.3e-06 Score=83.69 Aligned_cols=122 Identities=13% Similarity=0.062 Sum_probs=81.2
Q ss_pred hhhhhccCchhHHHHHHHHHHhhHHHHHHHHHhcc---CcccccceEEecCCccHHHH---HHHHHC-CCCeEEEeehhh
Q 044482 141 DCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYK---GFKELKKLVDVASCLGANMS---LIVNTY-PQITGINFDLPY 213 (345)
Q Consensus 141 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~~---~~~~~~~vlDiGgG~G~~~~---~l~~~~-p~~~~~~~Dlp~ 213 (345)
.|+.+++||-..+.|.+|+.. .+.+... .-.....|+|||||+|-+.. ..+++. -+++++.++-.+
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 367777888777778777643 1222211 02234579999999998843 333332 234778898855
Q ss_pred HhhhCC----------CceEEeccCCc-CCCCC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEE
Q 044482 214 VIKNAP----------CVEHVEGDMFV-NVPSG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRT 272 (345)
Q Consensus 214 ~i~~a~----------ri~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~l 272 (345)
+...++ +|+++.||+.+ .+|+. |+|+.-+.=...-.|-...+|-...+-||| ||.+
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKP---gGim 463 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKD---DGVS 463 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEE---EEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCC---CcEE
Confidence 554443 89999999999 88865 999876554333444455677777889999 8854
No 263
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.05 E-value=2.2e-06 Score=80.65 Aligned_cols=94 Identities=13% Similarity=0.026 Sum_probs=69.0
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCCC------CC-CEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNVP------SG-QAI 238 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~p------~~-D~i 238 (345)
....+|||+|||+|.++..+++.. ..+++++|+ +.+++.|+ +++++.+|+++.++ .. |+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 345799999999999999999863 237999999 77777654 47899999987322 13 999
Q ss_pred Eecccc-----ccCCh--hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 239 FTKSVL-----LNWSD--EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 239 ~~~~vl-----h~~~d--~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++.--. ++..+ +...++++.+.+.|+| ||.+++.
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~ 330 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAS 330 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEE
Confidence 984322 12222 2335688999999999 9988877
No 264
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.05 E-value=6.8e-06 Score=78.25 Aligned_cols=87 Identities=14% Similarity=0.066 Sum_probs=64.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCCC-CEEEeccccccCC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPSG-QAIFTKSVLLNWS 248 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~~-D~i~~~~vlh~~~ 248 (345)
...+|||+|||+|.++..+++. ..+++++|. +.+++.|+ .++|+.+|+.+..+.. |+|++.---....
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~~fD~Vv~dPPr~g~~ 367 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVKGFDTVIVDPPRAGLH 367 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCTTCSEEEECCCTTCSC
T ss_pred CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCccCCCEEEEcCCccchH
Confidence 4578999999999999999986 358999999 88888776 2789999998854434 9999853322221
Q ss_pred hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 249 DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 249 d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..+++.++ .|+| +|.+++.
T Consensus 368 ----~~~~~~l~-~l~p---~givyvs 386 (425)
T 2jjq_A 368 ----PRLVKRLN-REKP---GVIVYVS 386 (425)
T ss_dssp ----HHHHHHHH-HHCC---SEEEEEE
T ss_pred ----HHHHHHHH-hcCC---CcEEEEE
Confidence 13455554 4899 8877777
No 265
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.04 E-value=2.6e-06 Score=80.45 Aligned_cols=92 Identities=15% Similarity=0.043 Sum_probs=69.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCCC------CC-CEEE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNVP------SG-QAIF 239 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~p------~~-D~i~ 239 (345)
...+|||+|||+|.++..+++.. ..+++++|+ +.+++.++ +++++.+|+++..+ .. |+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 45799999999999999999874 458999999 77776544 46799999987322 23 9998
Q ss_pred ecccc--------ccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVL--------LNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vl--------h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+.--. ++.. .....++.++.+.|+| ||.+++.
T Consensus 299 ~dpP~~~~~~~~~~~~~-~~~~~~l~~~~~~Lkp---gG~l~~~ 338 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGAC-RGYKDINMLAIQLLNE---GGILLTF 338 (396)
T ss_dssp ECCSSTTTCSSSSSCCC-THHHHHHHHHHHTEEE---EEEEEEE
T ss_pred ECCCCCCCChhHHHHHH-HHHHHHHHHHHHhcCC---CcEEEEE
Confidence 85321 1111 3456899999999999 9988887
No 266
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.03 E-value=2.6e-06 Score=78.72 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=66.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------------CceEEeccCCcCC------CC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------------CVEHVEGDMFVNV------PS 234 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------------ri~~~~gd~~~~~------p~ 234 (345)
++.+|||||||+|.++..++++.+ .+++.+|+ |.+++.++ |++++.+|.++.+ ..
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~ 266 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 266 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCC
Confidence 568999999999999999998765 78999999 88877554 4788999998732 22
Q ss_pred C-CEEEecccc-c-cCChh--HHHHHHHHH----HhhCCCCCCCcEEEEE
Q 044482 235 G-QAIFTKSVL-L-NWSDE--QCLKILKNC----YDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~-D~i~~~~vl-h-~~~d~--~~~~iL~~~----~~aL~p~~~gG~lli~ 275 (345)
. |+|++--.- . ..... -....++.+ +++|+| ||.+++.
T Consensus 267 ~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~p---gGilv~q 313 (364)
T 2qfm_A 267 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFTQ 313 (364)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCC---CcEEEEE
Confidence 3 999886422 1 00110 113445555 999999 9977776
No 267
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.00 E-value=5.9e-06 Score=74.97 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=57.7
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-C--CC--
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-N--VP-- 233 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~--~p-- 233 (345)
..+++.+. .....+|||+|||+|..+..+++++|+.+++++|. |.+++.|+ |++++.+|+.+ + ++
T Consensus 16 ~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~ 94 (301)
T 1m6y_A 16 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL 94 (301)
T ss_dssp HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhc
Confidence 34555555 55668999999999999999999999889999999 88887665 68999999865 2 11
Q ss_pred --CC-CEEEecc
Q 044482 234 --SG-QAIFTKS 242 (345)
Q Consensus 234 --~~-D~i~~~~ 242 (345)
.. |+|++.-
T Consensus 95 g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 95 GIEKVDGILMDL 106 (301)
T ss_dssp TCSCEEEEEEEC
T ss_pred CCCCCCEEEEcC
Confidence 23 8887643
No 268
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=97.99 E-value=1.4e-05 Score=71.00 Aligned_cols=96 Identities=14% Similarity=0.199 Sum_probs=65.8
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-h-------hHhhhCC----------CceEEeccCCcC---CC--
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-P-------YVIKNAP----------CVEHVEGDMFVN---VP-- 233 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p-------~~i~~a~----------ri~~~~gd~~~~---~p-- 233 (345)
.....+|||+|||+|..+..+++. ..+++++|+ | .+++.++ |++++.+|+.+. ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 445579999999999999999986 468999999 7 6666554 599999998762 33
Q ss_pred -CC-CEEEeccccccCCh------------------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 234 -SG-QAIFTKSVLLNWSD------------------EQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 234 -~~-D~i~~~~vlh~~~d------------------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
.. |+|++.-.+++-.. .+...+++.+.+..+. +++|. ....
T Consensus 159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~-----~vvvk-~p~~ 219 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK-----RVVVK-RPRL 219 (258)
T ss_dssp HCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS-----EEEEE-EETT
T ss_pred CCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc-----EEEEE-cCCC
Confidence 33 99999765544221 1234556666666544 67776 5543
No 269
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=97.97 E-value=0.00028 Score=64.76 Aligned_cols=185 Identities=9% Similarity=0.059 Sum_probs=116.6
Q ss_pred cchhhhhccCc--hhHHHHHHHHHHhhHHHHHHHHHhc-cCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeehhhH
Q 044482 139 IMDCIYLTMLP--MMLNLFNQSMQNHTAIVMKKILEIY-KGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDLPYV 214 (345)
Q Consensus 139 ~~~~~~~~~~~--~~~~~f~~~m~~~~~~~~~~i~~~~-~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dlp~~ 214 (345)
.+++.++-..+ ......++++...+... +.+++.+ ....+...||-+|||.=...-.+... .++++++-+|+|++
T Consensus 48 Dpf~~~Fv~~~~~rr~P~inrG~~~Rt~~i-D~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~v 126 (334)
T 3iei_A 48 DPYIQHFVRLSKERKAPEINRGYFARVHGV-SQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMI 126 (334)
T ss_dssp CSSGGGTSCCCCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHH
T ss_pred CHHHHHHcCcccCCCCchHHHHHHHHHHHH-HHHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHH
Confidence 45666654322 33345555555444432 3333322 20123568999999999999998875 36789999999988
Q ss_pred hhh--------------------------------CCCceEEeccCCc--C---------CC-CC-CEEEeccccccCCh
Q 044482 215 IKN--------------------------------APCVEHVEGDMFV--N---------VP-SG-QAIFTKSVLLNWSD 249 (345)
Q Consensus 215 i~~--------------------------------a~ri~~~~gd~~~--~---------~p-~~-D~i~~~~vlh~~~d 249 (345)
++. ..+..+++.|+.+ . +. +. -++++-.+|.+++.
T Consensus 127 i~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~ 206 (334)
T 3iei_A 127 VTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTP 206 (334)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCH
T ss_pred HHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCH
Confidence 652 1267889999876 1 22 22 57777899999999
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEE
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKV 329 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~ 329 (345)
+++..+|+.+.+..++ |.+++. |.+.++++-..............+..+ ....+.++..+++.++||+.+++
T Consensus 207 ~~~~~ll~~ia~~f~~----~~~i~y-E~i~p~d~fg~~M~~~l~~~g~pl~sl---~~y~t~~~~~~r~~~~Gw~~~~~ 278 (334)
T 3iei_A 207 EQSANLLKWAANSFER----AMFINY-EQVNMGDRFGQIMIENLRRRQCDLAGV---ETCKSLESQKERLLSNGWETASA 278 (334)
T ss_dssp HHHHHHHHHHHHHCSS----EEEEEE-EECCTTSHHHHHHHHHHHTTTCCCTTG---GGGGCHHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHHHhCCC----ceEEEE-eccCCCCHHHHHHHHHHHHhCCCCccc---ccCCCHHHHHHHHHHcCCCccee
Confidence 9999999999998755 678888 988553310000000000000000000 12357888999999999999877
Q ss_pred Eec
Q 044482 330 ICR 332 (345)
Q Consensus 330 ~~~ 332 (345)
.+.
T Consensus 279 ~d~ 281 (334)
T 3iei_A 279 VDM 281 (334)
T ss_dssp EEH
T ss_pred ecH
Confidence 655
No 270
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=97.94 E-value=2.6e-05 Score=68.88 Aligned_cols=103 Identities=8% Similarity=-0.015 Sum_probs=64.2
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehh-hH----hhhCC---CceEEeccCCc-CCCC--CCE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLP-YV----IKNAP---CVEHVEGDMFV-NVPS--GQA 237 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp-~~----i~~a~---ri~~~~gd~~~-~~p~--~D~ 237 (345)
.+.+..- +....+|||||||+|.++..++++.+-.++.++|+- .+ +.... ++.....++-. .++. .|+
T Consensus 65 ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~Dl 143 (277)
T 3evf_A 65 WFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDT 143 (277)
T ss_dssp HHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred HHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccE
Confidence 4445433 666779999999999999998887665455555542 11 11010 33444444322 4443 399
Q ss_pred EEeccccc---cCChh-HHHHHHHHHHhhCCCCCCC-cEEEEE
Q 044482 238 IFTKSVLL---NWSDE-QCLKILKNCYDALPKSRKH-GRTQLR 275 (345)
Q Consensus 238 i~~~~vlh---~~~d~-~~~~iL~~~~~aL~p~~~g-G~lli~ 275 (345)
|++.-..+ +|.|. ....+|+.+.+.|+| | |.+++-
T Consensus 144 VlsD~apnsG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~K 183 (277)
T 3evf_A 144 LLCDIGESSSSSVTEGERTVRVLDTVEKWLAC---GVDNFCVK 183 (277)
T ss_dssp EEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEEE
T ss_pred EEecCccCcCchHHHHHHHHHHHHHHHHHhCC---CCCeEEEE
Confidence 99876554 23333 233578999999999 9 877664
No 271
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.93 E-value=2.3e-05 Score=79.24 Aligned_cols=105 Identities=11% Similarity=-0.071 Sum_probs=73.1
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHH------------------------------------------CCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNT------------------------------------------YPQI 204 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~------------------------------------------~p~~ 204 (345)
+..++.... |....+|+|.+||+|.+++..+.. .++.
T Consensus 179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 344555555 777789999999999999987764 2346
Q ss_pred eEEEeeh-hhHhhhCC----------CceEEeccCCc-CCC--C-C-CEEEeccccc--cCChhHHHHHHHHHH---hhC
Q 044482 205 TGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVP--S-G-QAIFTKSVLL--NWSDEQCLKILKNCY---DAL 263 (345)
Q Consensus 205 ~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p--~-~-D~i~~~~vlh--~~~d~~~~~iL~~~~---~aL 263 (345)
+++++|+ |.+++.|+ +++|..+|+.+ ..| . . |+|+++--.. .=++++...+.+.+. +.+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 8999999 88888776 48999999987 333 2 3 9999873322 112334445555444 445
Q ss_pred CCCCCCcEEEEE
Q 044482 264 PKSRKHGRTQLR 275 (345)
Q Consensus 264 ~p~~~gG~lli~ 275 (345)
.| ||+++|+
T Consensus 338 ~~---g~~~~il 346 (703)
T 3v97_A 338 FG---GWNLSLF 346 (703)
T ss_dssp CT---TCEEEEE
T ss_pred CC---CCeEEEE
Confidence 58 9998887
No 272
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=97.93 E-value=8.2e-06 Score=73.36 Aligned_cols=94 Identities=12% Similarity=0.033 Sum_probs=71.6
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------CceEEeccCCcCCC---CC-CEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------CVEHVEGDMFVNVP---SG-QAI 238 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~~~p---~~-D~i 238 (345)
+++++||=||||.|..++.+++..|..+++++|+ |.|++.++ |++++.+|.++.+. +. |+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 4568999999999999999998777778999999 88887654 89999999998443 23 998
Q ss_pred EeccccccCChhH---HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 239 FTKSVLLNWSDEQ---CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 239 ~~~~vlh~~~d~~---~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++-..=- ..... -...++.|+++|+| ||.++..
T Consensus 162 i~D~~dp-~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~q 197 (294)
T 3o4f_A 162 ISDCTDP-IGPGESLFTSAFYEGCKRCLNP---GGIFVAQ 197 (294)
T ss_dssp EESCCCC-CCTTCCSSCCHHHHHHHHTEEE---EEEEEEE
T ss_pred EEeCCCc-CCCchhhcCHHHHHHHHHHhCC---CCEEEEe
Confidence 8643211 11110 13579999999999 9977765
No 273
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.92 E-value=8.9e-06 Score=82.30 Aligned_cols=93 Identities=13% Similarity=0.119 Sum_probs=69.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCCC---CC-CEEEecc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNVP---SG-QAIFTKS 242 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~p---~~-D~i~~~~ 242 (345)
...+|||+|||+|.++..+++.. ..+++++|+ +.+++.++ +++++.+|+++.++ .. |+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 34689999999999999998753 346999999 77777665 48899999987322 23 9999853
Q ss_pred cc--------ccCC-hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VL--------LNWS-DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vl--------h~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
-. +.+. .....++++++.+.|+| ||.|++.
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp---gG~L~~s 656 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA---GGTIMFS 656 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCC---CcEEEEE
Confidence 21 1111 13456899999999999 9998876
No 274
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=97.88 E-value=8.1e-06 Score=72.36 Aligned_cols=125 Identities=16% Similarity=0.093 Sum_probs=82.6
Q ss_pred cccceEEecCCccHHHHHHHHH-------CCC-----CeEEEeeh-h---hHhh------------------h-------
Q 044482 179 ELKKLVDVASCLGANMSLIVNT-------YPQ-----ITGINFDL-P---YVIK------------------N------- 217 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~-------~p~-----~~~~~~Dl-p---~~i~------------------~------- 217 (345)
...+|||||+|+|..+..+++. +|+ ++++.++. | +.+. .
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 3468999999999999887765 674 67898886 4 2211 1
Q ss_pred ------CC---CceEEeccCCcC---CCC----C-CEEEeccc-cc----cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 218 ------AP---CVEHVEGDMFVN---VPS----G-QAIFTKSV-LL----NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 218 ------a~---ri~~~~gd~~~~---~p~----~-D~i~~~~v-lh----~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.. +++++.||+.+- ++. . |+|++--. -. .|+ ..+|+.+++.|+| ||.++..
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~----~~~l~~l~~~L~p---GG~l~ty 212 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWT----QNLFNAMARLARP---GGTLATF 212 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCC----HHHHHHHHHHEEE---EEEEEES
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcC----HHHHHHHHHHcCC---CcEEEEE
Confidence 11 577889998762 322 3 88887421 10 133 3689999999999 9977654
Q ss_pred eccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 276 SKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 276 ~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
.. ...+++.|.++||++.++...+.-..++.+.|+
T Consensus 213 -sa---------------------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~~ 247 (257)
T 2qy6_A 213 -TS---------------------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLCGVME 247 (257)
T ss_dssp -CC---------------------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEEEEEC
T ss_pred -eC---------------------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEEEEec
Confidence 10 023578888999997765444444556666654
No 275
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=97.87 E-value=3e-05 Score=77.04 Aligned_cols=122 Identities=10% Similarity=0.006 Sum_probs=76.4
Q ss_pred hhhhhccCchhHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHH----C---------CCCeEE
Q 044482 141 DCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNT----Y---------PQITGI 207 (345)
Q Consensus 141 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~----~---------p~~~~~ 207 (345)
.|+.+++|+...+.|.+|+... +.+....-.....|+|||||+|-++...+++ . ...+++
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy 450 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY 450 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred HHHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence 3555666776666777665432 1111110122467999999999996432222 1 234789
Q ss_pred Eeeh-hhHhhhCC---------CceEEeccCCc-CC------CC-CCEEEeccccccCChhHHHHHHHHHHhhCCCCCCC
Q 044482 208 NFDL-PYVIKNAP---------CVEHVEGDMFV-NV------PS-GQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKH 269 (345)
Q Consensus 208 ~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~------p~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~g 269 (345)
.+|- |..+...+ +|+++.+|+.+ .+ |+ .|+|+.-+.=.....+-...+|..+.+.|+| |
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp---~ 527 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP---T 527 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT---T
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC---C
Confidence 9998 32221111 79999999998 66 54 3999887664333444455678888899999 8
Q ss_pred cEE
Q 044482 270 GRT 272 (345)
Q Consensus 270 G~l 272 (345)
|.+
T Consensus 528 Gi~ 530 (745)
T 3ua3_A 528 TIS 530 (745)
T ss_dssp CEE
T ss_pred cEE
Confidence 843
No 276
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=97.71 E-value=1.2e-05 Score=75.07 Aligned_cols=83 Identities=8% Similarity=0.004 Sum_probs=59.9
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcC---CCC------------
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVN---VPS------------ 234 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~---~p~------------ 234 (345)
..+|||+|||+|.++..+++.. .+++++|. +.+++.|+ +++|+.+|+.+. ++.
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 3679999999999999998754 47999998 78877665 689999998762 221
Q ss_pred ---C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 ---G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ---~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|++.-- . ..+..++.+.|++ +|+|+.+
T Consensus 292 ~~~~fD~Vv~dPP-----r---~g~~~~~~~~l~~---~g~ivyv 325 (369)
T 3bt7_A 292 KSYQCETIFVDPP-----R---SGLDSETEKMVQA---YPRILYI 325 (369)
T ss_dssp GGCCEEEEEECCC-----T---TCCCHHHHHHHTT---SSEEEEE
T ss_pred ccCCCCEEEECcC-----c---cccHHHHHHHHhC---CCEEEEE
Confidence 3 88876321 1 1234455566678 8888888
No 277
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=97.69 E-value=0.00016 Score=65.79 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=91.8
Q ss_pred cccceEEecCCccHHHHHHHHHCC-CCeEEEeehhhHhhhCC------------CceEEeccCCcCCC----------CC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYP-QITGINFDLPYVIKNAP------------CVEHVEGDMFVNVP----------SG 235 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dlp~~i~~a~------------ri~~~~gd~~~~~p----------~~ 235 (345)
+...||+||||-=..+..+. .| +++++-+|.|.+++..+ +..++..|+.+.+. +.
T Consensus 102 g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 179 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred CCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence 34679999999988866654 35 47899999999876433 67889999875211 11
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhcc-chhhhhhc--------C
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTL-DIVMYDLF--------P 305 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~-d~~~~~~~--------~ 305 (345)
-++++-.+||++++++...+|+.+.+.+.| |+. ++. |.+.++.. ........+. . .+... .
T Consensus 180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~---gs~-l~~-d~~~~~~~--~~~~~~~~~~~~--~~~~~g~~~~~~l~ 250 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV---GSR-IAV-ETSPLHGD--EWREQMQLRFRR--VSDALGFEQAVDVQ 250 (310)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT---TCE-EEE-ECCCTTCS--HHHHHHHHHHHH--HHC-----------
T ss_pred CEEEEEechHhhCCHHHHHHHHHHHHHhCCC---CeE-EEE-EecCCCCc--chhHHHHHHHHH--HHHHcCCcCCCCcc
Confidence 467888999999999999999999999888 765 455 56554331 0000000000 0 00000 0
Q ss_pred CCcc-CC-HHHHHHHHHHCCCCce
Q 044482 306 QAKG-RT-AGEFKALAMAAGFGTI 327 (345)
Q Consensus 306 ~~~~-rt-~~e~~~ll~~aGf~~~ 327 (345)
+-.. ++ .++..++|.+.||+.+
T Consensus 251 ~~~~~~~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 251 ELIYHDENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp CCTTCCTTCCCHHHHHTTTTEEEE
T ss_pred ccccCCCChHHHHHHHHHCcCccc
Confidence 1112 36 7899999999999887
No 278
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=97.64 E-value=2.9e-05 Score=72.74 Aligned_cols=87 Identities=13% Similarity=-0.025 Sum_probs=66.5
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------------------CceEEeccCCcC---
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------------------CVEHVEGDMFVN--- 231 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------------ri~~~~gd~~~~--- 231 (345)
..+|||+|||+|..+..++++.|..+++.+|+ +..++.++ +++++.+|+.+.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 47899999999999999999988889999999 66655443 277888998762
Q ss_pred CCCC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 232 VPSG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 232 ~p~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+.. |+|++.- . .+ ...+|..+.+.|+| ||.+++.
T Consensus 128 ~~~~fD~I~lDP-~--~~---~~~~l~~a~~~lk~---gG~l~vt 163 (378)
T 2dul_A 128 RHRYFHFIDLDP-F--GS---PMEFLDTALRSAKR---RGILGVT 163 (378)
T ss_dssp STTCEEEEEECC-S--SC---CHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccCCCCEEEeCC-C--CC---HHHHHHHHHHhcCC---CCEEEEE
Confidence 2233 9888542 1 11 14688999999999 9977776
No 279
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=97.63 E-value=7.2e-05 Score=66.18 Aligned_cols=104 Identities=13% Similarity=0.074 Sum_probs=67.2
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehh-hHhhhCC-------Cc-eEEec-cCCcCCC-C-
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLP-YVIKNAP-------CV-EHVEG-DMFVNVP-S- 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp-~~i~~a~-------ri-~~~~g-d~~~~~p-~- 234 (345)
...+.+.+- +....+|||||||.|.++...+++.+-.+++++|+- .+...+. ++ .+... |+.. ++ .
T Consensus 79 L~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~-l~~~~ 156 (282)
T 3gcz_A 79 LRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFN-MEVIP 156 (282)
T ss_dssp HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGG-SCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhh-cCCCC
Confidence 345666664 777789999999999999999988776678888872 2111111 22 23322 4433 33 2
Q ss_pred CCEEEeccccc---cCChh-HHHHHHHHHHhhCCCCCCC--cEEEEE
Q 044482 235 GQAIFTKSVLL---NWSDE-QCLKILKNCYDALPKSRKH--GRTQLR 275 (345)
Q Consensus 235 ~D~i~~~~vlh---~~~d~-~~~~iL~~~~~aL~p~~~g--G~lli~ 275 (345)
.|+|++--..+ .+.|. ....+|.-+.+.|+| | |.+++-
T Consensus 157 ~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~K 200 (282)
T 3gcz_A 157 GDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCIK 200 (282)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEEE
T ss_pred cCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEEE
Confidence 39999876654 11122 233578888999999 8 877665
No 280
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=97.56 E-value=0.00024 Score=64.64 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=50.3
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-----CC-CEEE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-----SG-QAIF 239 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-----~~-D~i~ 239 (345)
.....+|||+|||+|..+..+++.. +..+++.+|+ +..++.++ +++++.+|+.+..+ .. |.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4556799999999999999999874 5689999999 77666544 68999999877221 22 8888
Q ss_pred e
Q 044482 240 T 240 (345)
Q Consensus 240 ~ 240 (345)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 6
No 281
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.49 E-value=0.00012 Score=71.88 Aligned_cols=104 Identities=14% Similarity=0.087 Sum_probs=73.0
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCC------------------CCeEEEeeh-hhHhhhCC---------
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP------------------QITGINFDL-PYVIKNAP--------- 219 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p------------------~~~~~~~Dl-p~~i~~a~--------- 219 (345)
..+++.+. .....+|+|.|||+|.++..+++... ..+++++|+ |.+++.|+
T Consensus 159 ~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~ 237 (541)
T 2ar0_A 159 KTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 237 (541)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 33445444 34457999999999999988876531 237899998 77766554
Q ss_pred C-----ceEEeccCCc-C-CC-CC-CEEEeccccccCC------------hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 C-----VEHVEGDMFV-N-VP-SG-QAIFTKSVLLNWS------------DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 r-----i~~~~gd~~~-~-~p-~~-D~i~~~~vlh~~~------------d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. +.+..+|.+. + .+ .. |+|+++--+.... ...-...+.++.+.|+| ||++.++
T Consensus 238 ~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V 311 (541)
T 2ar0_A 238 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVV 311 (541)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEE
Confidence 2 6789999987 3 22 23 9999875443221 11124689999999999 9998888
No 282
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.34 E-value=0.00011 Score=69.06 Aligned_cols=88 Identities=11% Similarity=0.017 Sum_probs=67.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC----------C-ceEEeccCCcCC----CCC-CEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP----------C-VEHVEGDMFVNV----PSG-QAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~----------r-i~~~~gd~~~~~----p~~-D~i~~ 240 (345)
...+|||++||+|.++..++++.++ .+++.+|+ |..++.++ + ++++.+|.++-. +.. |+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4578999999999999999998766 57899999 77666554 3 899999987622 223 99988
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.- . ... ..++..+.+.|+| ||.|++.
T Consensus 132 DP--~--g~~--~~~l~~a~~~Lk~---gGll~~t 157 (392)
T 3axs_A 132 DP--F--GTP--VPFIESVALSMKR---GGILSLT 157 (392)
T ss_dssp CC--S--SCC--HHHHHHHHHHEEE---EEEEEEE
T ss_pred CC--C--cCH--HHHHHHHHHHhCC---CCEEEEE
Confidence 64 1 111 3578899999999 9977776
No 283
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.28 E-value=0.001 Score=59.18 Aligned_cols=103 Identities=9% Similarity=0.032 Sum_probs=64.3
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhh-HhhhC------C-C-ceEEec-cCCcCCCC-CCE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPY-VIKNA------P-C-VEHVEG-DMFVNVPS-GQA 237 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~-~i~~a------~-r-i~~~~g-d~~~~~p~-~D~ 237 (345)
.+.+. .-+....+||||||++|.++..++++.+-..++++|+.. +.... . + +.+..+ |++.-.+. .|+
T Consensus 72 ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~Dl 150 (300)
T 3eld_A 72 WLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDT 150 (300)
T ss_dssp HHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred HHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCE
Confidence 44444 335667899999999999999999877656778888732 11111 1 2 233333 54432222 399
Q ss_pred EEeccccc----cCChhHHHHHHHHHHhhCCCCCCC-cEEEEE
Q 044482 238 IFTKSVLL----NWSDEQCLKILKNCYDALPKSRKH-GRTQLR 275 (345)
Q Consensus 238 i~~~~vlh----~~~d~~~~~iL~~~~~aL~p~~~g-G~lli~ 275 (345)
|++.-.-+ ..+......+|.-+.+.|+| | |.+++-
T Consensus 151 VlsD~APnsG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~K 190 (300)
T 3eld_A 151 LLCDIGESSSNPLVERDRTMKVLENFERWKHV---NTENFCVK 190 (300)
T ss_dssp EEECCCCCCSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEEE
T ss_pred EeecCcCCCCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEEE
Confidence 98865443 11111224578888999999 9 987765
No 284
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.28 E-value=0.00074 Score=62.39 Aligned_cols=91 Identities=12% Similarity=0.017 Sum_probs=66.1
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhh---CCCceEEeccCCcCCC-CC--CEEEeccccccCChh
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKN---APCVEHVEGDMFVNVP-SG--QAIFTKSVLLNWSDE 250 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~---a~ri~~~~gd~~~~~p-~~--D~i~~~~vlh~~~d~ 250 (345)
+....++||+||++|.++..++++ +.+++.+|.-++-.. ..+|+++.+|.++..| .+ |+|++-.+. +..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~---~p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE---KPA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS---CHH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC---ChH
Confidence 345689999999999999999987 579999997444332 2289999999999444 33 888886654 445
Q ss_pred HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 251 QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 251 ~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
....++.+....... ++.|+.+
T Consensus 284 ~~~~l~~~wl~~~~~---~~aI~~l 305 (375)
T 4auk_A 284 KVAALMAQWLVNGWC---RETIFNL 305 (375)
T ss_dssp HHHHHHHHHHHTTSC---SEEEEEE
T ss_pred HhHHHHHHHHhcccc---ceEEEEE
Confidence 556666666666665 5655555
No 285
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.26 E-value=0.00059 Score=60.27 Aligned_cols=74 Identities=11% Similarity=0.219 Sum_probs=53.6
Q ss_pred HHHhccCcccc--cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhH-------hhhC-----------CCceEEeccC
Q 044482 170 ILEIYKGFKEL--KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYV-------IKNA-----------PCVEHVEGDM 228 (345)
Q Consensus 170 i~~~~~~~~~~--~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~-------i~~a-----------~ri~~~~gd~ 228 (345)
+.+.+. .... .+|||+|||+|..+..++.+ +.+++++|. |.+ ++.+ .|++++.+|.
T Consensus 78 l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp HHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 344444 4444 79999999999999999998 457999999 543 2211 2688999998
Q ss_pred CcC---CCCC-CEEEecccccc
Q 044482 229 FVN---VPSG-QAIFTKSVLLN 246 (345)
Q Consensus 229 ~~~---~p~~-D~i~~~~vlh~ 246 (345)
.+. +++. |+|++.-..++
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHHhCcccCCEEEEcCCCCC
Confidence 763 2334 99999876654
No 286
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.24 E-value=0.00021 Score=70.05 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=91.9
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCC---------------CCeEEEeeh-hhHhhhCC----------C
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP---------------QITGINFDL-PYVIKNAP----------C 220 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p---------------~~~~~~~Dl-p~~i~~a~----------r 220 (345)
+..+++.+. -. ..+|+|.+||+|.++..+++..+ ..+++++|+ |.++..|+ +
T Consensus 234 v~lmv~ll~-p~-~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~ 311 (544)
T 3khk_A 234 VTLIVEMLE-PY-KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFN 311 (544)
T ss_dssp HHHHHHHHC-CC-SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCB
T ss_pred HHHHHHHHh-cC-CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence 344445444 22 24999999999999988765432 467899999 77776665 3
Q ss_pred ceEEeccCCc-CC-CC-C-CEEEeccccc--cCChhH-------------------------HHHHHHHHHhhCCCCCCC
Q 044482 221 VEHVEGDMFV-NV-PS-G-QAIFTKSVLL--NWSDEQ-------------------------CLKILKNCYDALPKSRKH 269 (345)
Q Consensus 221 i~~~~gd~~~-~~-p~-~-D~i~~~~vlh--~~~d~~-------------------------~~~iL~~~~~aL~p~~~g 269 (345)
+.+..+|.+. +. +. . |+|+++=-+. .|..+. -...++++.+.|+| |
T Consensus 312 i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---g 388 (544)
T 3khk_A 312 FGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP---T 388 (544)
T ss_dssp CCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE---E
T ss_pred cceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc---C
Confidence 4448899887 32 32 3 9999863332 232211 12588999999999 9
Q ss_pred cEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCC--------ceEEEEE
Q 044482 270 GRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSY--------CYWVIEF 341 (345)
Q Consensus 270 G~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~--------~~~vi~~ 341 (345)
|++.++ +|+. . ++ ++ ......++++|-+.+. +..+..+|. ...|+..
T Consensus 389 Gr~aiV----lP~g----------~--------L~-~~-~~~~~~iRk~Lle~~~-l~aII~LP~~lF~~t~i~t~Ilvl 443 (544)
T 3khk_A 389 GSMALL----LANG----------S--------MS-SN-TNNEGEIRKTLVEQDL-VECMVALPGQLFTNTQIPACIWFL 443 (544)
T ss_dssp EEEEEE----EETH----------H--------HH-CC-GGGHHHHHHHHHHTTC-EEEEEECCTTBCCSCSSCEEEEEE
T ss_pred ceEEEE----ecch----------h--------hh-cC-cchHHHHHHHHHhCCc-HhEEEECCCCCCCCCCCCeEEEEE
Confidence 998877 1111 0 01 10 0125667887777753 556666653 2466766
Q ss_pred EcC
Q 044482 342 YKP 344 (345)
Q Consensus 342 ~k~ 344 (345)
.|.
T Consensus 444 ~K~ 446 (544)
T 3khk_A 444 TKD 446 (544)
T ss_dssp ESC
T ss_pred ecC
Confidence 664
No 287
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.20 E-value=0.00086 Score=53.40 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=57.2
Q ss_pred cccceEEecCCcc-HHHHHHHHHCCCCeEEEeeh-hhHhhhCCCceEEeccCCcCCC---CC-CEEEeccccccCChhHH
Q 044482 179 ELKKLVDVASCLG-ANMSLIVNTYPQITGINFDL-PYVIKNAPCVEHVEGDMFVNVP---SG-QAIFTKSVLLNWSDEQC 252 (345)
Q Consensus 179 ~~~~vlDiGgG~G-~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ri~~~~gd~~~~~p---~~-D~i~~~~vlh~~~d~~~ 252 (345)
...++||||||.| ..+..|++.. +..+++.|+ |..++ ++..|+|++.. ++ |+|+..+ ++.+.
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~------~v~dDiF~P~~~~Y~~~DLIYsir-----PP~El 102 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG------IVRDDITSPRMEIYRGAALIYSIR-----PPAEI 102 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT------EECCCSSSCCHHHHTTEEEEEEES-----CCTTT
T ss_pred CCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc------eEEccCCCCcccccCCcCEEEEcC-----CCHHH
Confidence 4579999999999 5888888753 678999998 54333 89999999665 24 8886654 34455
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 253 LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 253 ~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..-+.++++...- -++|.
T Consensus 103 ~~~i~~lA~~v~a-----dliI~ 120 (153)
T 2k4m_A 103 HSSLMRVADAVGA-----RLIIK 120 (153)
T ss_dssp HHHHHHHHHHHTC-----EEEEE
T ss_pred HHHHHHHHHHcCC-----CEEEE
Confidence 5666666666544 56666
No 288
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.01 E-value=0.00031 Score=66.14 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=48.7
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCCC-----CCCEEEec
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNVP-----SGQAIFTK 241 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~p-----~~D~i~~~ 241 (345)
...+|||+|||+|..+..+++.. .+++++|. +.+++.++ +++++.+|+++.++ ..|+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 35799999999999999998774 58999999 77777554 48899999987322 23999983
No 289
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.00 E-value=0.0014 Score=66.18 Aligned_cols=94 Identities=7% Similarity=-0.032 Sum_probs=65.7
Q ss_pred cccceEEecCCccHHHHHHHHHCC---CCeEEEeeh-hhHhhhC--C-------------CceEEeccCCcCC--C-CC-
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYP---QITGINFDL-PYVIKNA--P-------------CVEHVEGDMFVNV--P-SG- 235 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p---~~~~~~~Dl-p~~i~~a--~-------------ri~~~~gd~~~~~--p-~~- 235 (345)
...+|+|.|||+|.++.+++++.+ ..+++++|+ |.+++.| + ...+...|++++. + ..
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 457899999999999999999876 357899999 6666655 1 1355666776622 2 23
Q ss_pred CEEEecccc-ccCC-hhH-------------------------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVL-LNWS-DEQ-------------------------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vl-h~~~-d~~-------------------------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|+++=-. ..+. +.. ...+++++.+.|+| ||++.++
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfI 464 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAI 464 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEE
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEE
Confidence 999986333 1111 111 23478889999999 9998887
No 290
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.00 E-value=0.0025 Score=62.36 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=68.1
Q ss_pred cccceEEecCCccHHHHHHHHHC---CCCeEEEeeh-hhHhhhCC-----------CceEEeccCCc-CCC---C-C-CE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTY---PQITGINFDL-PYVIKNAP-----------CVEHVEGDMFV-NVP---S-G-QA 237 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~---p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~-~~p---~-~-D~ 237 (345)
...+|+|.+||+|.++..+++.. +..+++++|+ +.++..|+ ++.+..+|.+. ++| . . |+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 45689999999999999998884 3578999999 66666554 35688999997 333 2 2 99
Q ss_pred EEecccc-ccCCh---------------------hHHHHHHHHHHhhCC-CCCCCcEEEEE
Q 044482 238 IFTKSVL-LNWSD---------------------EQCLKILKNCYDALP-KSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vl-h~~~d---------------------~~~~~iL~~~~~aL~-p~~~gG~lli~ 275 (345)
|+++=-+ ..|.. .+ ...+.++.+.|+ | ||++.++
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~---gGr~a~V 357 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQD---NGVMAIV 357 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTT---TCEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCC---ceeEEEE
Confidence 9976211 12211 11 248999999999 9 9998877
No 291
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=96.98 E-value=0.00042 Score=64.24 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=66.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------------CceEEeccCCcCC---C---C
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------------CVEHVEGDMFVNV---P---S 234 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------------ri~~~~gd~~~~~---p---~ 234 (345)
++++||=||||.|..++++++. |..+++++|+ |.|++.++ |++++.+|.++.+ + .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 3579999999999999999974 5578999999 88887654 5788889987522 1 2
Q ss_pred C-CEEEecccccc-CCh------hH-HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 G-QAIFTKSVLLN-WSD------EQ-CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~-D~i~~~~vlh~-~~d------~~-~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|++--.-.. -++ .. ...+++.++++|+| ||.++..
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFTQ 330 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEEEe
Confidence 2 88887522110 011 11 24678999999999 8866654
No 292
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.94 E-value=0.011 Score=59.66 Aligned_cols=143 Identities=11% Similarity=0.033 Sum_probs=100.8
Q ss_pred cccceEEecCCccHHHHHHHHHCC--------CCeEEEeehhhHhhhCC-------------------------------
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYP--------QITGINFDLPYVIKNAP------------------------------- 219 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p--------~~~~~~~Dlp~~i~~a~------------------------------- 219 (345)
+...||-+|||.=...-.|...+| +++++-+|+|++++.-+
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 356899999999999999988866 67889999998865211
Q ss_pred --CceEEeccCCc--CC----------C-CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCC
Q 044482 220 --CVEHVEGDMFV--NV----------P-SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPES 283 (345)
Q Consensus 220 --ri~~~~gd~~~--~~----------p-~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~ 283 (345)
+..+++.|+.+ .+ . +. -++++--+|.+++.+++.++|+.+.+ + | +|.+++. |.+.+..
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~---~~~~~~~-e~~~~~~ 260 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E---NSHFIIL-EQLIPKG 260 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S---SEEEEEE-EECCTTC
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C---CceEEEE-EeecCCC
Confidence 56788889876 21 2 22 56777899999999999999999984 5 6 7888888 9887754
Q ss_pred CCCchhhhhhhccchhhhhhc----C-CCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 284 PEFSSINRNILTLDIVMYDLF----P-QAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 284 ~~~~~~~~~~~~~d~~~~~~~----~-~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
+.++. ...+ +..+... . -....+.++..+.|.+.||+.+.....
T Consensus 261 ~~d~f----~~~m-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 261 PFEPF----SKQM-LAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp TTSHH----HHHH-HHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred CCChH----HHHH-HHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 43321 1111 0011110 0 013457999999999999987666543
No 293
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=96.86 E-value=0.00059 Score=59.48 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=63.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHH--CCC--CeEEEeehhhHhhhC---CCc---eEEec-cCCcCCCC-
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNT--YPQ--ITGINFDLPYVIKNA---PCV---EHVEG-DMFVNVPS- 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~--~p~--~~~~~~Dlp~~i~~a---~ri---~~~~g-d~~~~~p~- 234 (345)
..+|-+.+ -+....+|||+||+.|.++...+++ -.. ...+++|+ ++.+.. .++ +|..| ||++..+.
T Consensus 62 L~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~ 139 (269)
T 2px2_A 62 LRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKPSEI 139 (269)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCCCCC
Confidence 34555665 3777889999999999999999886 211 12355563 222221 244 45557 99984343
Q ss_pred CCEEEecccc--ccCChhH--HHHHHHHHHhhCCCCCCCc-EEEEE
Q 044482 235 GQAIFTKSVL--LNWSDEQ--CLKILKNCYDALPKSRKHG-RTQLR 275 (345)
Q Consensus 235 ~D~i~~~~vl--h~~~d~~--~~~iL~~~~~aL~p~~~gG-~lli~ 275 (345)
.|+|++--.= -++.-++ ....|.-+.+.|+| || .+++-
T Consensus 140 ~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~FvvK 182 (269)
T 2px2_A 140 SDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSR---GPKEFCIK 182 (269)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEEE
T ss_pred CCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhc---CCcEEEEE
Confidence 4999874322 1111111 12356667789999 88 66665
No 294
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=96.77 E-value=0.0014 Score=58.24 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=50.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCCc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMFV 230 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~ 230 (345)
.+.+++.+. ......+||.+||.|..+..|+++ +.+++++|. |..++.++ |++++.+||.+
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 456677776 667789999999999999999998 679999999 77776553 78888888765
No 295
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=96.56 E-value=0.0055 Score=55.16 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=75.0
Q ss_pred ccceEEecCCccHHHHHH----HHHCCCCe--EEEeehh---------hH--------hhhCC-------CceEEeccCC
Q 044482 180 LKKLVDVASCLGANMSLI----VNTYPQIT--GINFDLP---------YV--------IKNAP-------CVEHVEGDMF 229 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l----~~~~p~~~--~~~~Dlp---------~~--------i~~a~-------ri~~~~gd~~ 229 (345)
.-+|+|+|=|+|...... .+..|+.+ ++.++.. +. .+... .+.+.-||+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 357999999999865443 34578765 4555521 00 01111 3556778876
Q ss_pred cCCC---CC--CEEEecccc-----ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchh
Q 044482 230 VNVP---SG--QAIFTKSVL-----LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIV 299 (345)
Q Consensus 230 ~~~p---~~--D~i~~~~vl-----h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~ 299 (345)
+.++ .. |++++-..= ..|+ ..+|+++++.++| ||.+.-.
T Consensus 177 ~~l~~l~~~~~Da~flDgFsP~kNPeLWs----~e~f~~l~~~~~p---gg~laTY------------------------ 225 (308)
T 3vyw_A 177 KRIKEVENFKADAVFHDAFSPYKNPELWT----LDFLSLIKERIDE---KGYWVSY------------------------ 225 (308)
T ss_dssp HHGGGCCSCCEEEEEECCSCTTTSGGGGS----HHHHHHHHTTEEE---EEEEEES------------------------
T ss_pred HHHhhhcccceeEEEeCCCCcccCcccCC----HHHHHHHHHHhCC---CcEEEEE------------------------
Confidence 6333 22 888774322 2233 3578999999999 8755433
Q ss_pred hhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 300 MYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 300 ~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
+ ....+++-|.+|||++.++...+.-..++.+.++
T Consensus 226 ----t------aag~VRR~L~~aGF~V~k~~G~g~KReml~A~~~ 260 (308)
T 3vyw_A 226 ----S------SSLSVRKSLLTLGFKVGSSREIGRKRKGTVASLK 260 (308)
T ss_dssp ----C------CCHHHHHHHHHTTCEEEEEECC---CEEEEEESS
T ss_pred ----e------CcHHHHHHHHHCCCEEEecCCCCCCCceeEEecC
Confidence 0 1244688999999998777655544566777654
No 296
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=96.55 E-value=0.0045 Score=53.19 Aligned_cols=97 Identities=11% Similarity=0.066 Sum_probs=65.1
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhH-hhh---CC-----CceEEec-cCCcCCC-CC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYV-IKN---AP-----CVEHVEG-DMFVNVP-SG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~-i~~---a~-----ri~~~~g-d~~~~~p-~~ 235 (345)
...+.+.+- +....+||||||++|.++...+....-.+++++|+-.. -+. .+ .++|..+ |++.-.| ..
T Consensus 67 L~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~ 145 (267)
T 3p8z_A 67 LQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC 145 (267)
T ss_dssp HHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence 445666664 77778999999999999998888776668999998322 121 11 6999999 9876323 34
Q ss_pred CEEEeccccccCChh--HH---HHHHHHHHhhCCC
Q 044482 236 QAIFTKSVLLNWSDE--QC---LKILKNCYDALPK 265 (345)
Q Consensus 236 D~i~~~~vlh~~~d~--~~---~~iL~~~~~aL~p 265 (345)
|+++|--.= --+.. +. .++|.-+.+.|++
T Consensus 146 DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~ 179 (267)
T 3p8z_A 146 DTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN 179 (267)
T ss_dssp SEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS
T ss_pred cEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc
Confidence 888874322 11111 22 3466666788888
No 297
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=96.54 E-value=0.01 Score=52.74 Aligned_cols=104 Identities=12% Similarity=0.106 Sum_probs=67.1
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhH-------hhhCC--CceEEec-cCCcCCC-CC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYV-------IKNAP--CVEHVEG-DMFVNVP-SG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~-------i~~a~--ri~~~~g-d~~~~~p-~~ 235 (345)
...+.+.+. +....+||||||++|.++...+....-.+++++|+-.. .++-. -+.+..+ |++.--| ..
T Consensus 83 L~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 83 LRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 345556555 66677999999999999998887776567999998222 11111 5788888 8766222 34
Q ss_pred CEEEeccccccCChh--HH---HHHHHHHHhhCCCCCCC-cEEEEE
Q 044482 236 QAIFTKSVLLNWSDE--QC---LKILKNCYDALPKSRKH-GRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~--~~---~~iL~~~~~aL~p~~~g-G~lli~ 275 (345)
|+++|--. ---+.. +. .++|.-+.+.|++ + |.++|-
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~---~~~~f~~K 203 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR---GPREFCVK 203 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT---CCCEEEEE
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc---CCCcEEEE
Confidence 88887543 222221 22 3466666788888 6 666554
No 298
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=96.44 E-value=0.0012 Score=75.35 Aligned_cols=150 Identities=14% Similarity=0.023 Sum_probs=66.8
Q ss_pred ccceEEecCCccHHHHHHHHHCCC-----CeEEEeeh-hhHhhhCC-C-----ceEEeccCCcC---CCCC-CEEEeccc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQ-----ITGINFDL-PYVIKNAP-C-----VEHVEGDMFVN---VPSG-QAIFTKSV 243 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~-----~~~~~~Dl-p~~i~~a~-r-----i~~~~gd~~~~---~p~~-D~i~~~~v 243 (345)
.-+||+||+|+|..+..+++...+ .+.+.-|. +...+.++ + ++...-|..++ .+.+ |+|+..++
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence 358999999999887777766432 24566676 55566665 3 22211122222 1233 99999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAG 323 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aG 323 (345)
||.-++. ...|+++++.|+| ||++++. +......-.. ...+ .+.. .. .+....+.++|.++|+++|
T Consensus 1321 l~~t~~~--~~~l~~~~~lL~p---~G~l~~~-e~~~~~~~g~-~~~~----~~~~--~r-~~~~~~~~~~w~~~l~~~g 1386 (2512)
T 2vz8_A 1321 LATLGDP--AVAVGNMAATLKE---GGFLLLH-TLLAGHPLGE-MVGF----LTSP--EQ-GGRHLLSQDQWESLFAGAS 1386 (2512)
T ss_dssp -------------------------CCEEEEE-EC----------------------------------CTTTTSSTTTT
T ss_pred ccccccH--HHHHHHHHHhcCC---CcEEEEE-eccccccccc-cccc----cccc--cc-cCCcccCHHHHHHHHHhCC
Confidence 9865554 4679999999999 9999988 7532100000 0000 0000 00 0122346778999999999
Q ss_pred CCceEEEecCCceEEEEEEc
Q 044482 324 FGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 324 f~~~~~~~~~~~~~vi~~~k 343 (345)
|..+..........++..++
T Consensus 1387 f~~~~~~~~~~~~~~~~~~~ 1406 (2512)
T 2vz8_A 1387 LHLVALKRSFYGSVLFLCRQ 1406 (2512)
T ss_dssp EEEEEEEEETTSCEEEEEEE
T ss_pred CceeeeccCCCceEEEEEec
Confidence 98876643222334444443
No 299
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=95.96 E-value=0.0099 Score=54.04 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=50.9
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC-----CceEEeccCCc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP-----CVEHVEGDMFV 230 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~ 230 (345)
..++++.+. ......+||..+|.|..+..|+++. |+.+++++|. |..++.++ |++++.++|-+
T Consensus 46 l~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 46 LDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp THHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 456777777 6677899999999999999999984 7899999999 88887765 66666666543
No 300
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=95.87 E-value=0.042 Score=46.36 Aligned_cols=88 Identities=8% Similarity=0.003 Sum_probs=58.1
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------CceEEeccCCcC------------
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------CVEHVEGDMFVN------------ 231 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~~------------ 231 (345)
..+..+||+||+| ..+..+++ .++.+++.+|. ++..+.++ +|+++.||..+.
T Consensus 28 l~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 28 YEEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HHHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred hhCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence 3456799999985 56666665 45778999997 55544332 588999996431
Q ss_pred ------------CC-CC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 232 ------------VP-SG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 232 ------------~p-~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
.+ .+ |+|++-.-- . ...+..+.+.|+| ||.| |+ |.+
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k------~-~~~~~~~l~~l~~---GG~I-v~-DNv 155 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGRF------R-VGCALATAFSITR---PVTL-LF-DDY 155 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSSS------H-HHHHHHHHHHCSS---CEEE-EE-TTG
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCCC------c-hhHHHHHHHhcCC---CeEE-EE-eCC
Confidence 22 13 999987521 1 2445557789999 8866 66 554
No 301
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=95.38 E-value=0.024 Score=50.54 Aligned_cols=88 Identities=18% Similarity=0.124 Sum_probs=62.2
Q ss_pred ccceEEecCCccHHHHHHHHHC-----CCCeEEEeeh----hh------------------------------HhhhC--
Q 044482 180 LKKLVDVASCLGANMSLIVNTY-----PQITGINFDL----PY------------------------------VIKNA-- 218 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~-----p~~~~~~~Dl----p~------------------------------~i~~a-- 218 (345)
...||++|+..|..+..+++.. |+.+++++|. |+ .++.+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 5799999999999998887654 5778999994 11 01111
Q ss_pred --CCceEEeccCCcCCC---CC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 219 --PCVEHVEGDMFVNVP---SG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 219 --~ri~~~~gd~~~~~p---~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+|+++.||+.+.+| .+ |++++-.- + -+.....|..+...|+| || ++|+
T Consensus 187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~-y~~~~~~Le~~~p~L~p---GG-iIv~ 242 (282)
T 2wk1_A 187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---L-YESTWDTLTNLYPKVSV---GG-YVIV 242 (282)
T ss_dssp CSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---S-HHHHHHHHHHHGGGEEE---EE-EEEE
T ss_pred CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---c-cccHHHHHHHHHhhcCC---CE-EEEE
Confidence 279999999987544 22 77776542 1 12346789999999999 77 5566
No 302
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=95.35 E-value=0.023 Score=52.26 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=38.1
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhh---h--CC-CceEEeccCCc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIK---N--AP-CVEHVEGDMFV 230 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~---~--a~-ri~~~~gd~~~ 230 (345)
..+|||||.|.|.++..|+++....+++++++ +..++ . .. +++++.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 47899999999999999998743345777776 33322 1 12 89999999976
No 303
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=95.31 E-value=0.018 Score=53.26 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=68.1
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------------CceEEeccCCc--CC-CCC-C
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------------CVEHVEGDMFV--NV-PSG-Q 236 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------------ri~~~~gd~~~--~~-p~~-D 236 (345)
.....+|||+.+|.|.-+..+++..++..++..|. +.-++..+ ++.+...|... +. +.. |
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 55678999999999999999999887777899997 33222111 56777788765 22 233 8
Q ss_pred EEEec----c----c-------cccCChhHH-------HHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 237 AIFTK----S----V-------LLNWSDEQC-------LKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 237 ~i~~~----~----v-------lh~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
.|++- . + ...|..++. .+||+++.+.||| ||+|+-. ..-+
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYs-TCSl 287 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYS-TCSL 287 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEE-ESCC
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEE-eCCC
Confidence 88762 1 1 222333322 4799999999999 9987766 4433
No 304
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=94.34 E-value=0.035 Score=49.78 Aligned_cols=50 Identities=10% Similarity=0.159 Sum_probs=38.2
Q ss_pred HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP 219 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ 219 (345)
....+++.+. .....|||++||+|.++.++++. +.+++++|+ |.+++.|+
T Consensus 224 l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~ 274 (297)
T 2zig_A 224 LAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAK 274 (297)
T ss_dssp HHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 3445555543 34578999999999999998876 358999999 77777766
No 305
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=93.97 E-value=0.21 Score=48.61 Aligned_cols=105 Identities=10% Similarity=0.053 Sum_probs=66.4
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHC-------------CCCeEEEeeh-hhHhhhCC---------CceE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-------------PQITGINFDL-PYVIKNAP---------CVEH 223 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-------------p~~~~~~~Dl-p~~i~~a~---------ri~~ 223 (345)
+.-+++.++ -....+|+|-+||+|.++....+.. .+..+.++|+ +.+...|+ .-.+
T Consensus 206 v~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I 284 (530)
T 3ufb_A 206 VRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRI 284 (530)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEE
T ss_pred HHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccc
Confidence 344455555 3445699999999999998776532 1346889998 66555544 3456
Q ss_pred EeccCCc-CCC----C-C-CEEEeccccc-cCCh-------------hHHHHHHHHHHhhCC-------CCCCCcEEEEE
Q 044482 224 VEGDMFV-NVP----S-G-QAIFTKSVLL-NWSD-------------EQCLKILKNCYDALP-------KSRKHGRTQLR 275 (345)
Q Consensus 224 ~~gd~~~-~~p----~-~-D~i~~~~vlh-~~~d-------------~~~~~iL~~~~~aL~-------p~~~gG~lli~ 275 (345)
..+|.+. +.. . . |+|+.+=-+- .|.. +.....+.++.+.|+ | ||++.++
T Consensus 285 ~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~---gGr~avV 361 (530)
T 3ufb_A 285 DPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN---GGRAAVV 361 (530)
T ss_dssp ECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS---CCEEEEE
T ss_pred cccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC---CceEEEE
Confidence 7788876 322 1 2 9998864431 1111 112346777777776 6 8998877
No 306
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=93.94 E-value=0.11 Score=46.25 Aligned_cols=92 Identities=11% Similarity=0.111 Sum_probs=61.8
Q ss_pred cccccceEEecC------CccHHHHHHHHHCCC-CeEEEeehhhHhhhCCCceEEeccCCc-CCCCC-CEEEeccc----
Q 044482 177 FKELKKLVDVAS------CLGANMSLIVNTYPQ-ITGINFDLPYVIKNAPCVEHVEGDMFV-NVPSG-QAIFTKSV---- 243 (345)
Q Consensus 177 ~~~~~~vlDiGg------G~G~~~~~l~~~~p~-~~~~~~Dlp~~i~~a~ri~~~~gd~~~-~~p~~-D~i~~~~v---- 243 (345)
.+...+|||+|+ -.|.+ .+.+..|+ ..++.+|+.++...+. .++.||+.+ ..... |+|++--.
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~--~~IqGD~~~~~~~~k~DLVISDMAPNtT 182 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDAD--STLIGDCATVHTANKWDLIISDMYDPRT 182 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSS--EEEESCGGGEEESSCEEEEEECCCCTTS
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCC--eEEEccccccccCCCCCEEEecCCCCcC
Confidence 345689999995 77774 44455786 6899999966654432 458999776 22223 88876311
Q ss_pred ---cccC--ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 244 ---LLNW--SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 244 ---lh~~--~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
-++- ...-+..+|.=+.+.|+| ||.+++-
T Consensus 183 G~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvVK 216 (344)
T 3r24_A 183 KHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVK 216 (344)
T ss_dssp CSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CccccchhHHHHHHHHHHHHHHHhCcC---CCEEEEE
Confidence 1111 222467778888899999 9988887
No 307
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=93.20 E-value=0.0061 Score=54.29 Aligned_cols=56 Identities=5% Similarity=-0.016 Sum_probs=44.6
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-eeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-MYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-~y~~t~~s~~ 101 (345)
|.++| ...+.+.|+.|||+++|+ ....+.|+|+.|+..|++.++++ +|.+++..-.
T Consensus 35 IL~~l-~~~~~~ltl~eia~~lgl-------~ksTv~RlL~tL~~~G~v~~~~~~~Y~LG~~~~~ 91 (275)
T 3mq0_A 35 ILDLV-AGSPRDLTAAELTRFLDL-------PKSSAHGLLAVMTELDLLARSADGTLRIGPHSLR 91 (275)
T ss_dssp HHHHH-HHCSSCEEHHHHHHHHTC-------C--CHHHHHHHHHHTTSEEECTTSEEEECTHHHH
T ss_pred HHHHH-hhCCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEECCCCcEEehHHHHH
Confidence 77777 333457999999999999 67889999999999999998753 7999876543
No 308
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=93.17 E-value=0.0082 Score=52.95 Aligned_cols=56 Identities=14% Similarity=0.030 Sum_probs=46.7
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe--EeeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV--VMYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~--~~y~~t~~s~~ 101 (345)
|.++| ...+.+.|+.|||+++|+ ....+.|+|+.|+..|++.+++ .+|++++..-.
T Consensus 11 IL~~l-~~~~~~lsl~eia~~lgl-------~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~~~~ 68 (260)
T 3r4k_A 11 LLTYF-NHGRLEIGLSDLTRLSGM-------NKATVYRLMSELQEAGFVEQVEGARSYRLGPQVLR 68 (260)
T ss_dssp HHTTC-BTTBSEEEHHHHHHHHCS-------CHHHHHHHHHHHHHTTSEEECSSSSEEEECTTHHH
T ss_pred HHHHH-hhCCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEcCCCCcEEcCHHHHH
Confidence 67777 332347999999999999 6789999999999999999876 48999887654
No 309
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=92.78 E-value=0.011 Score=51.93 Aligned_cols=56 Identities=5% Similarity=-0.121 Sum_probs=46.0
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~ 101 (345)
|.+.| ...+.+.|+.|||+++++ ....+.|+|+.|...|++++++..|++++....
T Consensus 19 iL~~l-~~~~~~~~~~eia~~~gl-------~~stv~r~l~~L~~~G~v~~~~~~Y~Lg~~~~~ 74 (257)
T 2g7u_A 19 VLLAF-DAQRPNPTLAELATEAGL-------SRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLS 74 (257)
T ss_dssp HHHTC-SSSCSSCBHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTEEEECGGGHH
T ss_pred HHHHH-HhCCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEeCCCEEEEcHHHHH
Confidence 66677 332347899999999999 678899999999999999987678999876643
No 310
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=92.62 E-value=0.0079 Score=41.23 Aligned_cols=54 Identities=6% Similarity=0.007 Sum_probs=41.9
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-EeeecC
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-VMYNLF 96 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-~~y~~t 96 (345)
+.. |.++| ...+.++|..|||+++++ ....+.+.+..|...|++.... +.|.++
T Consensus 12 ~~~-IL~~L-~~~~~~~s~~eLA~~lgl-------sr~tv~~~l~~L~~~G~I~~~~~G~y~lg 66 (67)
T 2heo_A 12 EQK-ILQVL-SDDGGPVAIFQLVKKCQV-------PKKTLNQVLYRLKKEDRVSSPSPKYWSIG 66 (67)
T ss_dssp HHH-HHHHH-HHHCSCEEHHHHHHHHCS-------CHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred HHH-HHHHH-HHcCCCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCcEecCCCceEeeC
Confidence 445 77777 332347999999999999 6789999999999999986643 367654
No 311
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=92.46 E-value=0.0096 Score=52.64 Aligned_cols=56 Identities=11% Similarity=-0.041 Sum_probs=46.3
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~ 101 (345)
|.+.| ...+.+.|+.|||+++|+ ....+.|+|+.|...|++++++..|.+++..-.
T Consensus 26 iL~~l-~~~~~~~~~~eia~~~gl-------~~stv~r~l~tL~~~G~v~~~~~~Y~Lg~~~~~ 81 (265)
T 2ia2_A 26 VIRCF-DHRNQRRTLSDVARATDL-------TRATARRFLLTLVELGYVATDGSAFWLTPRVLE 81 (265)
T ss_dssp HHHTC-CSSCSSEEHHHHHHHHTC-------CHHHHHHHHHHHHHHTSEEESSSEEEECGGGGG
T ss_pred HHHHH-HhCCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEecCCEEEEcHHHHH
Confidence 66777 332347999999999999 678899999999999999988778999876544
No 312
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=91.82 E-value=0.94 Score=36.16 Aligned_cols=119 Identities=16% Similarity=0.105 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-----hhHhhhCCCceEEec
Q 044482 152 LNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-----PYVIKNAPCVEHVEG 226 (345)
Q Consensus 152 ~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-----p~~i~~a~ri~~~~g 226 (345)
.+.|.+-|.+..... ...+.... .-..-|+|+|=|+|.+=-.+.+.+|+-++.++|. |..+.. .=.++.|
T Consensus 16 LDsfirRltaQR~~L-~~a~~~v~--~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~--~e~~ilG 90 (174)
T 3iht_A 16 LDLFIDRMVSQRACL-EHAIAQTA--GLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPP--EAQLILG 90 (174)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHTT--TCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCC--GGGEEES
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhc--CCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCc--hHheecc
Confidence 356666666544432 23333332 2236899999999999999999999999999996 222221 3457888
Q ss_pred cCCcCCCC-----C-CEEEeccccccCChh----HHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 227 DMFVNVPS-----G-QAIFTKSVLLNWSDE----QCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 227 d~~~~~p~-----~-D~i~~~~vlh~~~d~----~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
|+.+.+|. + .+.+...=|---..+ .+..+=.-+...|.| ||.++.- +.+
T Consensus 91 di~~tL~~~~~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~---GGi~vS~-~pl 149 (174)
T 3iht_A 91 DIRETLPATLERFGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQ---GGLMVSS-DRM 149 (174)
T ss_dssp CHHHHHHHHHHHHCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEE---EEEEEES-SCC
T ss_pred cHHHHHHHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcC---CcEEEeC-Ccc
Confidence 88774442 3 444443333222222 223334446778889 7754444 554
No 313
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=91.59 E-value=0.11 Score=47.93 Aligned_cols=71 Identities=45% Similarity=0.874 Sum_probs=54.0
Q ss_pred cCCCchhhhhhcCHHHHHHHHHHHHHhhh---------hc-cccccceeeccCCCchhHHHHHHHcCCCcccCCCccccc
Q 044482 4 HNGLHLFDYASKDARLQNLFNQSMHNHTA---------IG-FEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVI 73 (345)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~f~~~~~l~~a---------~~-l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l 73 (345)
++|.++|+++..+|+....|...|...+. +. +.+.-.+||.++|.|..+..|+++.+-++++.+|.|..+
T Consensus 158 ~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~ 237 (364)
T 3p9c_A 158 AYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVI 237 (364)
T ss_dssp HHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHH
T ss_pred hcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHH
Confidence 56889999999999999999887754321 12 322456889999999999999999987777777666555
Q ss_pred c
Q 044482 74 E 74 (345)
Q Consensus 74 ~ 74 (345)
.
T Consensus 238 ~ 238 (364)
T 3p9c_A 238 S 238 (364)
T ss_dssp T
T ss_pred H
Confidence 4
No 314
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=91.47 E-value=0.14 Score=47.24 Aligned_cols=72 Identities=44% Similarity=0.841 Sum_probs=53.8
Q ss_pred ccCCCchhhhhhcCHHHHHHHHHHHHHhhh---------hc-cccccceeeccCCCchhHHHHHHHcCCCcccCCCcccc
Q 044482 3 AHNGLHLFDYASKDARLQNLFNQSMHNHTA---------IG-FEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHV 72 (345)
Q Consensus 3 ~~~g~~~~~~~~~~~~~~~~f~~~~~l~~a---------~~-l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~ 72 (345)
..+|.++|+++..+|+....|...|.-.+. +. +.+...+||.++|.|..+..|+++.+-++++.+|.|..
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~ 238 (368)
T 3reo_A 159 KAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHV 238 (368)
T ss_dssp HHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH
T ss_pred HHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHH
Confidence 357899999999999999989887754321 11 22245688999999999999999998767777766555
Q ss_pred cc
Q 044482 73 IE 74 (345)
Q Consensus 73 l~ 74 (345)
+.
T Consensus 239 ~~ 240 (368)
T 3reo_A 239 IQ 240 (368)
T ss_dssp HT
T ss_pred HH
Confidence 44
No 315
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=91.44 E-value=0.019 Score=49.97 Aligned_cols=56 Identities=7% Similarity=0.006 Sum_probs=45.2
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe--EeeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV--VMYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~--~~y~~t~~s~~ 101 (345)
|.+.| ...+.+.|+.|||+++++ +...+.|+|+.|...|+++++. .+|++++....
T Consensus 11 iL~~l-~~~~~~~s~~ela~~~gl-------~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~~~ 68 (241)
T 2xrn_A 11 IMRAL-GSHPHGLSLAAIAQLVGL-------PRSTVQRIINALEEEFLVEALGPAGGFRLGPALGQ 68 (241)
T ss_dssp HHHHH-HTCTTCEEHHHHHHHTTS-------CHHHHHHHHHHHHTTTSEEECGGGCEEEECSHHHH
T ss_pred HHHHH-HhCCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEeCCCCeEEECHHHHH
Confidence 56666 332346999999999999 6788999999999999998875 48999876544
No 316
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=91.17 E-value=0.025 Score=41.42 Aligned_cols=62 Identities=5% Similarity=-0.019 Sum_probs=48.2
Q ss_pred HHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCc
Q 044482 28 HNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGA 99 (345)
Q Consensus 28 ~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s 99 (345)
++....++. |...| ..+ ++.|..+||+.+++ .+..+.+.|+.|...|++..... .|.+|+..
T Consensus 20 ~l~~~~~~~-il~~l-~~~-~~~s~~ela~~l~i-------s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~ 85 (99)
T 3cuo_A 20 AMSHPKRLL-ILCML-SGS-PGTSAGELTRITGL-------SASATSQHLARMRDEGLIDSQRDAQRILYSIKNEA 85 (99)
T ss_dssp HHCSHHHHH-HHHHH-TTC-CSEEHHHHHHHHCC-------CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHH
T ss_pred HhCChHHHH-HHHHH-HhC-CCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHH
Confidence 445556777 88888 543 36899999999999 67889999999999999977543 56666554
No 317
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=90.45 E-value=0.29 Score=44.82 Aligned_cols=70 Identities=23% Similarity=0.322 Sum_probs=54.8
Q ss_pred CchhhhhhcCHHHHHHHHHHHHHh---------hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCcccccccc
Q 044482 7 LHLFDYASKDARLQNLFNQSMHNH---------TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENA 76 (345)
Q Consensus 7 ~~~~~~~~~~~~~~~~f~~~~~l~---------~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rl 76 (345)
.++|+++.++|+....|...|.-. .+.++...-.++|.+||.|..+.+|+++.+-++++.+|.|..+...
T Consensus 140 ~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a 218 (353)
T 4a6d_A 140 EELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTA 218 (353)
T ss_dssp SSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHH
Confidence 458999999999999998877533 2334443455789999999999999999999899888888766543
No 318
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=90.23 E-value=0.014 Score=41.34 Aligned_cols=55 Identities=5% Similarity=-0.062 Sum_probs=43.5
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccc-cccccCCCCccCceeeEEe---EeeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPH-VIENASSSPVSRNISTIDV---VMYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~-~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~ 101 (345)
|.++|-.. | +.|+.+||+.+++ .+. .+++-|..|...|++...+ +.|.+|+.+..
T Consensus 16 IL~~Lk~~-g-~~ta~eiA~~Lgi-------t~~~aVr~hL~~Le~eGlV~~~~~gRP~w~LT~~g~~ 74 (79)
T 1xmk_A 16 ICDYLFNV-S-DSSALNLAKNIGL-------TKARDINAVLIDMERQGDVYRQGTTPPIWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHT-C-CEEHHHHHHHHCG-------GGHHHHHHHHHHHHHTTSEEEECSSSCEEEECHHHHT
T ss_pred HHHHHHHc-C-CcCHHHHHHHcCC-------CcHHHHHHHHHHHHHCCCEEecCCCCCCeEeCHhHHh
Confidence 55666333 3 6899999999999 577 8999999999999998654 37888876654
No 319
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=89.74 E-value=0.025 Score=41.44 Aligned_cols=62 Identities=8% Similarity=-0.076 Sum_probs=49.6
Q ss_pred HHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCccc
Q 044482 28 HNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKE 101 (345)
Q Consensus 28 ~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~ 101 (345)
++....++. |++.| . + +.+..+||+++++ .+..+.+.|+.|...|++.+..+.|.+|+.+..
T Consensus 27 ~l~~~~r~~-Il~~L-~--~-~~~~~eLa~~l~i-------s~~tv~~~L~~L~~~Glv~~~~g~y~l~~~g~~ 88 (96)
T 1y0u_A 27 AVTNPVRRK-ILRML-D--K-GRSEEEIMQTLSL-------SKKQLDYHLKVLEAGFCIERVGERWVVTDAGKI 88 (96)
T ss_dssp HHSCHHHHH-HHHHH-H--T-TCCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTEEEECTTTCC
T ss_pred HhCCHHHHH-HHHHH-c--C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEECCEEEECCCchH
Confidence 444555677 88888 3 2 5899999999999 578899999999999999765468888887654
No 320
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=89.74 E-value=0.023 Score=49.59 Aligned_cols=55 Identities=9% Similarity=-0.081 Sum_probs=44.2
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE-eEeeecCCCcc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID-VVMYNLFPGAK 100 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~-~~~y~~t~~s~ 100 (345)
|.+.| ...+.+.|+.|||+++++ ....+.|+|+.|...|+++++ ...|.+++...
T Consensus 13 iL~~l-~~~~~~~~~~ela~~~gl-------~~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~~~ 68 (249)
T 1mkm_A 13 ILDFI-VKNPGDVSVSEIAEKFNM-------SVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLI 68 (249)
T ss_dssp HHHHH-HHCSSCBCHHHHHHHTTC-------CHHHHHHHHHHHHHTTSEEECTTSCEEECTHHH
T ss_pred HHHHH-HhCCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCcEEECCCCcEEECHHHH
Confidence 66666 332346899999999999 678899999999999999887 44888887653
No 321
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=89.38 E-value=0.027 Score=49.53 Aligned_cols=55 Identities=20% Similarity=0.150 Sum_probs=43.9
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-eeecCCCcc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-MYNLFPGAK 100 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-~y~~t~~s~ 100 (345)
|.+.|... +.+.|+.|||+++|+ ....+.|+|+.|...|+++++.. .|.+++...
T Consensus 28 iL~~l~~~-~~~~~~~eia~~~gl-------~kstv~r~l~tL~~~G~v~~~~~~~Y~lg~~~~ 83 (260)
T 2o0y_A 28 LLELFDAA-HPTRSLKELVEGTKL-------PKTTVVRLVATMCARSVLTSRADGSYSLGPEML 83 (260)
T ss_dssp HHTTCBTT-BSSBCHHHHHHHHCC-------CHHHHHHHHHHHHHTTSEEECTTSCEEECHHHH
T ss_pred HHHHHhhC-CCCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEECCCCeEEecHHHH
Confidence 66777322 247999999999999 67889999999999999988744 788876543
No 322
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=88.53 E-value=0.11 Score=38.99 Aligned_cols=63 Identities=8% Similarity=0.019 Sum_probs=48.7
Q ss_pred HHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCc
Q 044482 26 SMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGA 99 (345)
Q Consensus 26 ~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s 99 (345)
..++..-.++. |...| .. | +.+..|||+.+++ .+..+.+.|+.|...|+++.... .|.+++..
T Consensus 19 ~~al~~~~r~~-IL~~L-~~-~-~~s~~eLa~~lgi-------s~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~ 85 (108)
T 2kko_A 19 GKALANGRRLQ-ILDLL-AQ-G-ERAVEAIATATGM-------NLTTASANLQALKSGGLVEARREGTRQYYRIAGED 85 (108)
T ss_dssp HHHHTTSTTHH-HHHHH-TT-C-CEEHHHHHHHHTC-------CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHH
T ss_pred HHHhCCHHHHH-HHHHH-Hc-C-CcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHH
Confidence 34555666788 88888 54 3 6899999999999 67889999999999999976542 56666543
No 323
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=88.42 E-value=0.11 Score=40.28 Aligned_cols=47 Identities=15% Similarity=-0.017 Sum_probs=38.7
Q ss_pred CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE-e--EeeecCCCcc
Q 044482 47 GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID-V--VMYNLFPGAK 100 (345)
Q Consensus 47 g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~-~--~~y~~t~~s~ 100 (345)
+.+.|..+||+++++ .+..+.++|+.|...|+++.. + +.|.++.-..
T Consensus 24 ~~~~s~~ela~~~~i-------~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~~ 73 (129)
T 2y75_A 24 EGPTSLKSIAQTNNL-------SEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPD 73 (129)
T ss_dssp SCCBCHHHHHHHTTS-------CHHHHHHHHHHHHHTTSEEEC----CCEEESSCGG
T ss_pred CCcCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCceEecCCCCCceEeCCCHH
Confidence 347899999999999 689999999999999999765 2 3688766543
No 324
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=88.39 E-value=0.028 Score=40.05 Aligned_cols=63 Identities=6% Similarity=0.052 Sum_probs=43.2
Q ss_pred hhhhccccccceeeccC-CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE---eeecCCCcc
Q 044482 30 HTAIGFEELNELVDVAG-GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV---MYNLFPGAK 100 (345)
Q Consensus 30 ~~a~~l~~lfd~L~~~g-g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~---~y~~t~~s~ 100 (345)
..-.+-. |.++|...+ |.++|+.+||+++|+ ....+.+.|.-|...|++...+. .|...+...
T Consensus 8 ~~~~~~~-IL~~L~~~~pg~~~t~~eLA~~Lgv-------sr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~~ 74 (81)
T 1qbj_A 8 YQDQEQR-ILKFLEELGEGKATTAHDLSGKLGT-------PKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHH-HHHHHHHHCTTCCBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEESSSSCEEEEC----
T ss_pred chHHHHH-HHHHHHHcCCCCCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcHH
Confidence 3334555 666663332 346899999999999 56789999999999999987642 666665543
No 325
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=88.02 E-value=1.2 Score=41.37 Aligned_cols=63 Identities=11% Similarity=0.180 Sum_probs=40.4
Q ss_pred CchhHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHH---C----CCCeEEEeehhhHh
Q 044482 148 LPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNT---Y----PQITGINFDLPYVI 215 (345)
Q Consensus 148 ~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~---~----p~~~~~~~Dlp~~i 215 (345)
.|++.+.|.+.++..-.. +.+... .+..-+|+++|+|+|.++..+++. . ..++++++|..+.+
T Consensus 54 apeis~~FGe~la~~~~~----~w~~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~L 123 (387)
T 1zkd_A 54 SPEISQMFGELLGLWSAS----VWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL 123 (387)
T ss_dssp HHHHCHHHHHHHHHHHHH----HHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred CCchHHHHHHHHHHHHHH----HHHHcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHH
Confidence 366667777766543221 112222 334457999999999999998865 2 34588999984433
No 326
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=87.74 E-value=0.056 Score=39.61 Aligned_cols=61 Identities=5% Similarity=-0.012 Sum_probs=47.6
Q ss_pred HHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCc
Q 044482 28 HNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGA 99 (345)
Q Consensus 28 ~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s 99 (345)
++....++. |...| .. | +.|..+||+.+++ .+..+.+-|+.|...|+++.... .|++++..
T Consensus 19 ~l~~~~r~~-Il~~L-~~-~-~~~~~ela~~l~i-------s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~ 83 (98)
T 3jth_A 19 AMANERRLQ-ILCML-HN-Q-ELSVGELCAKLQL-------SQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEE 83 (98)
T ss_dssp HHCSHHHHH-HHHHT-TT-S-CEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHH
T ss_pred HcCCHHHHH-HHHHH-hc-C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHH
Confidence 445556777 88888 55 3 6899999999999 57889999999999999976542 56666543
No 327
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=87.63 E-value=0.031 Score=40.89 Aligned_cols=64 Identities=5% Similarity=-0.082 Sum_probs=49.0
Q ss_pred HHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---E----eeecCCCc
Q 044482 27 MHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---V----MYNLFPGA 99 (345)
Q Consensus 27 ~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~----~y~~t~~s 99 (345)
.++....++. |+..|... + +.|..+||+.+++ .+..+.+.|+.|...|+++... + .|.+|+.+
T Consensus 11 ~~l~~~~~~~-iL~~L~~~-~-~~~~~ela~~l~i-------s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g 80 (100)
T 1ub9_A 11 HILGNPVRLG-IMIFLLPR-R-KAPFSQIQKVLDL-------TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFG 80 (100)
T ss_dssp HHHHSHHHHH-HHHHHHHH-S-EEEHHHHHHHTTC-------CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHH
T ss_pred cccCChHHHH-HHHHHHhc-C-CcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHH
Confidence 4555666777 88877323 3 6899999999999 6788999999999999998643 1 56776665
Q ss_pred c
Q 044482 100 K 100 (345)
Q Consensus 100 ~ 100 (345)
.
T Consensus 81 ~ 81 (100)
T 1ub9_A 81 M 81 (100)
T ss_dssp H
T ss_pred H
Confidence 4
No 328
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=87.57 E-value=0.66 Score=40.43 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=37.0
Q ss_pred HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP 219 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ 219 (345)
....+++.+. .....|||..||+|+++.+..+. +.+++++|+ |..++.++
T Consensus 201 l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 201 LIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 3445555443 34578999999999999998876 468999999 66666554
No 329
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=87.40 E-value=0.081 Score=40.65 Aligned_cols=63 Identities=6% Similarity=-0.044 Sum_probs=47.5
Q ss_pred HHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCc
Q 044482 27 MHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGA 99 (345)
Q Consensus 27 ~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s 99 (345)
.++....++. |+..| ...+ +.+..+||+.+++ .+..+.+.|+.|...|++..... .|++++..
T Consensus 37 ~al~~~~rl~-IL~~L-~~~~-~~s~~eLa~~l~i-------s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~ 103 (122)
T 1u2w_A 37 KAIADENRAK-ITYAL-CQDE-ELCVCDIANILGV-------TIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEH 103 (122)
T ss_dssp HHHHSHHHHH-HHHHH-HHSS-CEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEC----CCEEEESCHH
T ss_pred HHhCCHHHHH-HHHHH-HHCC-CcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHH
Confidence 3445556778 88888 4223 6899999999999 67889999999999999976432 57776644
No 330
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=86.86 E-value=0.071 Score=40.68 Aligned_cols=63 Identities=3% Similarity=-0.146 Sum_probs=50.2
Q ss_pred HHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCcc
Q 044482 27 MHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGAK 100 (345)
Q Consensus 27 ~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s~ 100 (345)
.++..-..+. |...| ..| +.+..+||+.+++ .+..+.+-|+.|...|++..... .|++++...
T Consensus 13 ~al~~~~R~~-Il~~L-~~~--~~~~~eLa~~l~i-------s~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~ 79 (118)
T 3f6o_A 13 QALADPTRRA-VLGRL-SRG--PATVSELAKPFDM-------ALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPF 79 (118)
T ss_dssp HHHTSHHHHH-HHHHH-HTC--CEEHHHHHTTCCS-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred HHhCCHHHHH-HHHHH-HhC--CCCHHHHHHHhCc-------CHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHH
Confidence 4566667888 89888 543 6899999999999 57889999999999999976543 677777543
No 331
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=86.83 E-value=0.35 Score=44.07 Aligned_cols=71 Identities=24% Similarity=0.367 Sum_probs=51.9
Q ss_pred cCCCchhhhhhcCHHHHHHHHHHHHHhh---------hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCcccccc
Q 044482 4 HNGLHLFDYASKDARLQNLFNQSMHNHT---------AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIE 74 (345)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~f~~~~~l~~---------a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~ 74 (345)
.+|.++|+++.++|+....|...|.-.+ .+.+..--.+||.++|.|..+..|+++.+-++++..|.+..+.
T Consensus 142 ~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 221 (348)
T 3lst_A 142 IFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA 221 (348)
T ss_dssp HHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT
T ss_pred HhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh
Confidence 4678899999999999999988775432 2233223468899988999999999998765666665555443
No 332
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=86.44 E-value=0.22 Score=37.18 Aligned_cols=54 Identities=9% Similarity=0.031 Sum_probs=43.7
Q ss_pred ccceeeccCCCchhHHHHHHHc-CCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTY-SQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~-~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
|...| .. | +.+..|||+.+ ++ .+..+.+.|+.|...|++++... .|.+|+.++.
T Consensus 19 IL~~L-~~-~-~~~~~eLa~~l~~i-------s~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~ 80 (107)
T 2hzt_A 19 ILXHL-TH-G-KKRTSELKRLMPNI-------TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRS 80 (107)
T ss_dssp HHHHH-TT-C-CBCHHHHHHHCTTS-------CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGG
T ss_pred HHHHH-Hh-C-CCCHHHHHHHhcCC-------CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHH
Confidence 45555 33 3 68999999999 88 68899999999999999977542 7999988865
No 333
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=86.42 E-value=0.074 Score=39.30 Aligned_cols=62 Identities=10% Similarity=0.031 Sum_probs=48.6
Q ss_pred HHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCc
Q 044482 27 MHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGA 99 (345)
Q Consensus 27 ~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s 99 (345)
.++..-..+. |...| .+| +.+..+||+.+++ .+..+.+-|+.|...|++..... .|++|+..
T Consensus 18 ~~l~~~~r~~-Il~~L-~~~--~~~~~ela~~l~i-------s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~ 83 (102)
T 3pqk_A 18 KTLSHPVRLM-LVCTL-VEG--EFSVGELEQQIGI-------GQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAK 83 (102)
T ss_dssp HHHCSHHHHH-HHHHH-HTC--CBCHHHHHHHHTC-------CTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSST
T ss_pred HHcCCHHHHH-HHHHH-HhC--CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHH
Confidence 3455566777 88888 553 5899999999999 57789999999999999976532 67777754
No 334
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=86.00 E-value=0.36 Score=43.57 Aligned_cols=73 Identities=25% Similarity=0.399 Sum_probs=51.6
Q ss_pred cCCCchhhhhhcCHHHHHHHHHHHHHhh---------hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCcccccc
Q 044482 4 HNGLHLFDYASKDARLQNLFNQSMHNHT---------AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIE 74 (345)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~f~~~~~l~~---------a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~ 74 (345)
.+|.++|+++.++|+....|...|.-.+ .+.+...-.+||.++|.|..+..|+++.+-.+.+..|.|..+.
T Consensus 127 ~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 206 (332)
T 3i53_A 127 RYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPAS 206 (332)
T ss_dssp HHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHH
T ss_pred hhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHH
Confidence 4578899999999999999988775332 1122223467888888899999999998765655555555444
Q ss_pred cc
Q 044482 75 NA 76 (345)
Q Consensus 75 rl 76 (345)
..
T Consensus 207 ~a 208 (332)
T 3i53_A 207 AA 208 (332)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 335
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=85.88 E-value=0.092 Score=39.43 Aligned_cols=62 Identities=8% Similarity=-0.007 Sum_probs=48.0
Q ss_pred HHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCcc
Q 044482 28 HNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGAK 100 (345)
Q Consensus 28 ~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s~ 100 (345)
++.....+. |...| ..| +.+..+||+.+++ .+..+.+.|+.|...|++..... .|.+|+.+.
T Consensus 17 ~l~~~~r~~-IL~~L-~~~--~~~~~ela~~l~i-------s~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 17 ALSDETRWE-ILTEL-GRA--DQSASSLATRLPV-------SRQAIAKHLNALQACGLVESVKVGREIRYRALGAEL 82 (114)
T ss_dssp HTTCHHHHH-HHHHH-HHS--CBCHHHHHHHSSS-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred HhCChHHHH-HHHHH-HcC--CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHH
Confidence 344455677 88888 543 5899999999999 67889999999999999976543 477776553
No 336
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=85.72 E-value=0.72 Score=46.25 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=24.5
Q ss_pred ccceEEecCCccHHHHHHHHHC-------CC-----CeEEEeeh
Q 044482 180 LKKLVDVASCLGANMSLIVNTY-------PQ-----ITGINFDL 211 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~-------p~-----~~~~~~Dl 211 (345)
.-+|+|+|-|+|.......+.+ |+ ++++.++.
T Consensus 59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~ 102 (689)
T 3pvc_A 59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEK 102 (689)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeC
Confidence 4589999999999888876653 33 56788775
No 337
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=85.45 E-value=0.14 Score=38.17 Aligned_cols=62 Identities=10% Similarity=-0.009 Sum_probs=47.7
Q ss_pred HHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCc
Q 044482 27 MHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGA 99 (345)
Q Consensus 27 ~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s 99 (345)
.++..-.++. |+..| ..+ +.+..+||+.+++ .+..+.+.|+.|...|++..... .|++++..
T Consensus 21 ~~l~~~~r~~-IL~~L-~~~--~~~~~ela~~l~i-------s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~ 86 (106)
T 1r1u_A 21 KALGDYNRIR-IMELL-SVS--EASVGHISHQLNL-------SQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIH 86 (106)
T ss_dssp HHTCSHHHHH-HHHHH-HHC--CBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHH
T ss_pred HHhCCHHHHH-HHHHH-HhC--CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHH
Confidence 3455566788 88888 543 5899999999999 67889999999999999976543 56665543
No 338
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=85.42 E-value=0.18 Score=40.73 Aligned_cols=47 Identities=13% Similarity=0.006 Sum_probs=39.6
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCCCccc
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFPGAKE 101 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~ 101 (345)
.+.|.++||+++++ ++..++++|..|...|++.... +.|.++.-.+.
T Consensus 43 ~~~s~~eIA~~~~i-------~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~e 92 (159)
T 3lwf_A 43 GPISLRSIAQDKNL-------SEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEK 92 (159)
T ss_dssp CCBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCTTT
T ss_pred CCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCeEEEecCCCCceEecCCHHH
Confidence 47899999999999 7899999999999999997654 37888765544
No 339
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=85.36 E-value=0.27 Score=38.29 Aligned_cols=47 Identities=11% Similarity=0.001 Sum_probs=41.1
Q ss_pred chhHHHHHHHc-CCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCcccc
Q 044482 49 GVNMSLIVNTY-SQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKER 102 (345)
Q Consensus 49 ~~t~~eLA~~~-~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~l 102 (345)
+.+..||++.+ ++ .+..|.+.|+.|...|++++... .|++|+.++.+
T Consensus 39 ~~rf~eL~~~l~gI-------s~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l 93 (131)
T 4a5n_A 39 KKRFNEFRRICPSI-------TQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTL 93 (131)
T ss_dssp CBCHHHHHHHCTTS-------CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGG
T ss_pred CcCHHHHHHHhccc-------CHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHH
Confidence 68999999999 88 57899999999999999987642 79999999864
No 340
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=85.31 E-value=0.12 Score=36.20 Aligned_cols=56 Identities=7% Similarity=0.069 Sum_probs=41.5
Q ss_pred ccccccceeeccC-CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE---eeecCC
Q 044482 34 GFEELNELVDVAG-GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV---MYNLFP 97 (345)
Q Consensus 34 ~l~~lfd~L~~~g-g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~---~y~~t~ 97 (345)
+.. |.++|...+ |.+.|+.|||+++++ ....+.+.|..|...|++...++ .|..++
T Consensus 16 ~~~-IL~~L~~~~~~~~~t~~eLA~~Lgv-------s~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~~ 75 (77)
T 1qgp_A 16 EQR-ILKFLEELGEGKATTAHDLSGKLGT-------PKKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 75 (77)
T ss_dssp HHH-HHHHHHHHCSSSCEEHHHHHHHHCC-------CHHHHHHHHHHHHHHTSEEEECSSSCEEEECC
T ss_pred HHH-HHHHHHHcCCCCCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEecCCCCCceEecC
Confidence 445 666663332 346899999999999 56789999999999999987652 565544
No 341
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=85.11 E-value=0.084 Score=37.34 Aligned_cols=48 Identities=8% Similarity=-0.063 Sum_probs=37.8
Q ss_pred ccccccceeeccCC-CchhHHHHHHHc-----CCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 34 GFEELNELVDVAGG-LGVNMSLIVNTY-----SQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 34 ~l~~lfd~L~~~gg-~~~t~~eLA~~~-----~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
+.. |.+.| ...+ .+.|++||++++ ++ ...-+.|.|+.|...|++.+..
T Consensus 19 r~~-IL~~l-~~~~~~~~s~~el~~~l~~~~~~i-------s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 19 RLK-ILEVL-QEPDNHHVSAEDLYKRLIDMGEEI-------GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHH-HHHHH-TSGGGSSBCHHHHHHHHHHTTCCC-------CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHH-HHHHH-HhCCCCCCCHHHHHHHHHHhCCCC-------CHhhHHHHHHHHHHCCCeEEEe
Confidence 445 77777 3322 378999999999 77 5788999999999999998753
No 342
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=84.92 E-value=1.1 Score=44.87 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=23.7
Q ss_pred cceEEecCCccHHHHHHHHHC-------CC-----CeEEEeeh
Q 044482 181 KKLVDVASCLGANMSLIVNTY-------PQ-----ITGINFDL 211 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~-------p~-----~~~~~~Dl 211 (345)
-+|+|+|-|+|.......+.+ |+ ++++.++.
T Consensus 68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~ 110 (676)
T 3ps9_A 68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK 110 (676)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeC
Confidence 589999999999888776653 33 45788875
No 343
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=84.65 E-value=3.9 Score=31.50 Aligned_cols=85 Identities=11% Similarity=0.001 Sum_probs=51.3
Q ss_pred cceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCcC--C---C--CCCEEEeccccccCC-
Q 044482 181 KKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFVN--V---P--SGQAIFTKSVLLNWS- 248 (345)
Q Consensus 181 ~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~~--~---p--~~D~i~~~~vlh~~~- 248 (345)
.+|+=+|+|. |......+.+. +.+++++|. ++.++.++ ++.++.||..++ + . ..|++++. .+
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~-----~~~ 81 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILT-----IPN 81 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEEC-----CSC
T ss_pred CCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEE-----CCC
Confidence 5788888865 44444444443 468999998 66666554 788899998762 1 1 23777654 23
Q ss_pred hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 249 DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 249 d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+++...+.. ..+.+.| +.+++..
T Consensus 82 ~~~n~~~~~-~a~~~~~---~~~iiar 104 (140)
T 3fwz_A 82 GYEAGEIVA-SARAKNP---DIEIIAR 104 (140)
T ss_dssp HHHHHHHHH-HHHHHCS---SSEEEEE
T ss_pred hHHHHHHHH-HHHHHCC---CCeEEEE
Confidence 333333444 4556677 6776655
No 344
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=83.75 E-value=0.21 Score=39.57 Aligned_cols=47 Identities=13% Similarity=-0.012 Sum_probs=39.5
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCCCccc
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFPGAKE 101 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~ 101 (345)
.+.|.++||+++++ .+..++++|..|...|++.... +.|.++.-.+.
T Consensus 27 ~~~s~~~IA~~~~i-------~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~~ 76 (143)
T 3t8r_A 27 GCISLKSIAEENNL-------SDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAEE 76 (143)
T ss_dssp CCEEHHHHHHHTTC-------CHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCGGG
T ss_pred CCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCccc
Confidence 47999999999999 7899999999999999997553 37888765544
No 345
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=83.70 E-value=0.17 Score=36.84 Aligned_cols=46 Identities=7% Similarity=0.013 Sum_probs=38.7
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s~~ 101 (345)
+.|..+||+++++ ++..+.++++.|...|++....+ .|.+|+.+..
T Consensus 30 ~~t~~eLa~~l~i-------~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~ 79 (95)
T 2qvo_A 30 DVYIQYIASKVNS-------PHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQK 79 (95)
T ss_dssp CEEHHHHHHHSSS-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHH
T ss_pred CcCHHHHHHHHCc-------CHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHH
Confidence 4899999999999 68899999999999999944333 6888887765
No 346
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=83.46 E-value=1.2 Score=41.60 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=32.5
Q ss_pred ccccceEEecCCccHHHHHHH-HHCCC-CeEEEeeh-hhHhhh
Q 044482 178 KELKKLVDVASCLGANMSLIV-NTYPQ-ITGINFDL-PYVIKN 217 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~-~~~p~-~~~~~~Dl-p~~i~~ 217 (345)
.+..+++|||++.|.++..++ +..+. .+++.++. |...+.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~ 267 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQT 267 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence 456789999999999999988 66775 79999997 665443
No 347
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=83.04 E-value=0.08 Score=37.60 Aligned_cols=53 Identities=6% Similarity=-0.046 Sum_probs=41.0
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE---eeecCCCcc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV---MYNLFPGAK 100 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~---~y~~t~~s~ 100 (345)
|.++| ... +.|+.|||+++|+ ....+++.|..|...|++....+ .|.++..+.
T Consensus 22 IL~lL-~~~--g~sa~eLAk~Lgi-------Sk~aVr~~L~~Le~eG~I~~~~~~PP~W~~~~~~~ 77 (82)
T 1oyi_A 22 AIKTI-GIE--GATAAQLTRQLNM-------EKREVNKALYDLQRSAMVYSSDDIPPRWFMTTEAD 77 (82)
T ss_dssp HHHHH-SSS--TEEHHHHHHHSSS-------CHHHHHHHHHHHHHHTSSEECSSSSCEEESCC---
T ss_pred HHHHH-HHc--CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEeCCCCCCcceeccCcc
Confidence 66677 332 3899999999999 57889999999999999987643 777776543
No 348
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=82.88 E-value=0.37 Score=38.99 Aligned_cols=47 Identities=19% Similarity=0.041 Sum_probs=40.0
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE---eeecCCCccc
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV---MYNLFPGAKE 101 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~---~y~~t~~s~~ 101 (345)
.++|.++||+++++ .+..+++++..|...|+++-..+ .|.+..-...
T Consensus 27 ~~~s~~~IA~~~~i-------s~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~~ 76 (162)
T 3k69_A 27 SKVASRELAQSLHL-------NPVMIRNILSVLHKHGYLTGTVGKNGGYQLDLALAD 76 (162)
T ss_dssp SCBCHHHHHHHHTS-------CGGGTHHHHHHHHHTTSSEEECSTTCEEECCSCGGG
T ss_pred CCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEeecCCCCCeEecCChhh
Confidence 47899999999999 78999999999999999966533 7988766654
No 349
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=82.82 E-value=1.1 Score=41.10 Aligned_cols=72 Identities=43% Similarity=0.814 Sum_probs=44.3
Q ss_pred ccCCCchhhhhhcCHHHHHHHHHHHHHhh---------hhc-cccccceeeccCCCchhHHHHHHHcCCCcccCCCcccc
Q 044482 3 AHNGLHLFDYASKDARLQNLFNQSMHNHT---------AIG-FEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHV 72 (345)
Q Consensus 3 ~~~g~~~~~~~~~~~~~~~~f~~~~~l~~---------a~~-l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~ 72 (345)
..+|.++|+++.++|+....|...|.-.. .+. +..--.+||.++|.|..+..|+++.+-++++..|.|..
T Consensus 165 ~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~ 244 (372)
T 1fp1_D 165 NVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQV 244 (372)
T ss_dssp ---------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH
T ss_pred HHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHH
Confidence 35688899999999999998987764321 111 22134678988888999999999987656665555544
Q ss_pred cc
Q 044482 73 IE 74 (345)
Q Consensus 73 l~ 74 (345)
+.
T Consensus 245 ~~ 246 (372)
T 1fp1_D 245 IE 246 (372)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 350
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=82.78 E-value=0.11 Score=39.69 Aligned_cols=61 Identities=8% Similarity=-0.032 Sum_probs=47.0
Q ss_pred HHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCc
Q 044482 28 HNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGA 99 (345)
Q Consensus 28 ~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s 99 (345)
++..-.++. |...| ..+ +.+..+||+.+++ .+..+.+.|+.|...|++..... .|++|+..
T Consensus 17 aL~~~~r~~-IL~~L-~~~--~~~~~eLa~~lgi-------s~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~ 81 (118)
T 2jsc_A 17 ALADPTRCR-ILVAL-LDG--VCYPGQLAAHLGL-------TRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSH 81 (118)
T ss_dssp HHSSHHHHH-HHHHH-HTT--CCSTTTHHHHHSS-------CHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHH
T ss_pred HhCCHHHHH-HHHHH-HcC--CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCceEEEEECCEEEEEEChHH
Confidence 344455677 88888 543 5799999999999 67889999999999999976532 67777643
No 351
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=82.72 E-value=0.55 Score=42.87 Aligned_cols=71 Identities=31% Similarity=0.568 Sum_probs=50.7
Q ss_pred cCCCchhhhhhcCHHHHH--HHHHHHHHhh--------hh--ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccc
Q 044482 4 HNGLHLFDYASKDARLQN--LFNQSMHNHT--------AI--GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPH 71 (345)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~--~f~~~~~l~~--------a~--~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~ 71 (345)
.+|.++|+++.++|+... .|...|+-.+ .+ .+...-.+||.++|.|..+..|+++.+-++.+..|.+.
T Consensus 148 ~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~ 227 (358)
T 1zg3_A 148 ATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQ 227 (358)
T ss_dssp HHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHHHHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHH
T ss_pred HhCCCHHHHHhcChhhhhHHHHHHHHhcccHHHHHHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHH
Confidence 357889999999999998 8877765322 11 12113568899888999999999998765666665554
Q ss_pred ccc
Q 044482 72 VIE 74 (345)
Q Consensus 72 ~l~ 74 (345)
.+.
T Consensus 228 ~~~ 230 (358)
T 1zg3_A 228 VVG 230 (358)
T ss_dssp HHS
T ss_pred HHh
Confidence 443
No 352
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=82.69 E-value=0.11 Score=38.18 Aligned_cols=45 Identities=11% Similarity=-0.057 Sum_probs=42.3
Q ss_pred hhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCccc
Q 044482 50 VNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKE 101 (345)
Q Consensus 50 ~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~ 101 (345)
++..+||..+++ .++.+...++.|...|++++..+.|.+|+.+..
T Consensus 21 ~~~t~La~~~~l-------s~~~~~~~l~~L~~~GLI~~~~~~~~LT~kG~~ 65 (95)
T 1r7j_A 21 SPKTRIMYGANL-------SYALTGRYIKMLMDLEIIRQEGKQYMLTKKGEE 65 (95)
T ss_dssp BCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTEEEECHHHHH
T ss_pred CCHHHHHHHhCc-------CHHHHHHHHHHHHHCCCeEEECCeeEEChhHHH
Confidence 789999999999 799999999999999999998888999999987
No 353
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=82.67 E-value=0.72 Score=42.35 Aligned_cols=75 Identities=28% Similarity=0.539 Sum_probs=52.6
Q ss_pred cCCCchhhhhhcCHHHHHHHHHHHHHh---------hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCcccccc
Q 044482 4 HNGLHLFDYASKDARLQNLFNQSMHNH---------TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIE 74 (345)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~f~~~~~l~---------~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~ 74 (345)
.+|.++|+++.++|+....|...|... ..+.+...-.+||.++|.|..+..|+++.+-.+.+..|.|..+.
T Consensus 160 ~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 239 (369)
T 3gwz_A 160 ANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAE 239 (369)
T ss_dssp HHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHH
T ss_pred hcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHH
Confidence 357789999999999999998766532 22233224568899988999999999998765665555555444
Q ss_pred ccCC
Q 044482 75 NASS 78 (345)
Q Consensus 75 rlL~ 78 (345)
..-+
T Consensus 240 ~a~~ 243 (369)
T 3gwz_A 240 EARE 243 (369)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 354
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=82.40 E-value=0.75 Score=41.85 Aligned_cols=71 Identities=31% Similarity=0.639 Sum_probs=49.7
Q ss_pred cCCCchhhhhhcCHHHHHHHHHHHHHhhhh----------ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccc
Q 044482 4 HNGLHLFDYASKDARLQNLFNQSMHNHTAI----------GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVI 73 (345)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~f~~~~~l~~a~----------~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l 73 (345)
.+|.++|+++.++|+....|...|.-.+.. .+...-.+||.++|.|..+..|+++.+-.+.+..|.|..+
T Consensus 145 ~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~ 224 (352)
T 1fp2_A 145 TLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVV 224 (352)
T ss_dssp HHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHH
T ss_pred HcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhHHHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHH
Confidence 357889999999999999998877533211 1221346789988889999999999865455555554444
Q ss_pred c
Q 044482 74 E 74 (345)
Q Consensus 74 ~ 74 (345)
.
T Consensus 225 ~ 225 (352)
T 1fp2_A 225 E 225 (352)
T ss_dssp T
T ss_pred h
Confidence 3
No 355
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=82.30 E-value=0.14 Score=40.01 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=41.6
Q ss_pred hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 32 AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 32 a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
..++. +...|... + +.|..+||+.+++ .+..+.++++.|...|++++..+ .+.+|+.++.
T Consensus 37 ~~~~~-vL~~l~~~-~-~~t~~eLa~~l~~-------~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~ 103 (142)
T 3ech_A 37 PPDVH-VLKLIDEQ-R-GLNLQDLGRQMCR-------DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLA 103 (142)
T ss_dssp HHHHH-HHHHHHHT-T-TCCHHHHHHHHC----------CHHHHHHHHHHHTTSEEC----------CCEECHHHHH
T ss_pred HHHHH-HHHHHHhC-C-CcCHHHHHHHhCC-------CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHH
Confidence 44555 66677333 3 6899999999999 68899999999999999976432 4566666654
No 356
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=81.63 E-value=0.15 Score=40.81 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=49.7
Q ss_pred HHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCcc
Q 044482 27 MHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGAK 100 (345)
Q Consensus 27 ~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s~ 100 (345)
.+|..-.++. |...| .. + +.++.+||+.+++ .+..+.+-|+.|...|+++.... .|++|+...
T Consensus 53 ~aL~~p~R~~-IL~~L-~~-~-~~t~~eLa~~lgl-------s~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~ 119 (151)
T 3f6v_A 53 EVAAEPTRRR-LVQLL-TS-G-EQTVNNLAAHFPA-------SRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGL 119 (151)
T ss_dssp HHHTSHHHHH-HHHHG-GG-C-CEEHHHHHTTSSS-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHH
T ss_pred HHhCCHHHHH-HHHHH-Hh-C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHH
Confidence 4555666788 99899 54 3 6899999999999 57889999999999999976543 677776543
No 357
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=81.51 E-value=0.092 Score=38.45 Aligned_cols=55 Identities=7% Similarity=-0.013 Sum_probs=41.8
Q ss_pred ccceeeccCCCchhHHHH----HHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLI----VNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eL----A~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s~~ 101 (345)
++..| ...+ +.+..+| |+.+++ .+..+.++++.|...|++++..+ .|.+|+.++.
T Consensus 13 iL~~l-~~~~-~~~~~el~~~la~~l~i-------s~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~ 75 (99)
T 1tbx_A 13 VLAYL-YDNE-GIATYDLYKKVNAEFPM-------STATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKL 75 (99)
T ss_dssp HHHHH-TTCT-TCBHHHHHHHHHTTSCC-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHH-HHcC-CcCHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHH
Confidence 55556 3322 5899999 888899 68899999999999999987543 5666766655
No 358
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=81.36 E-value=0.25 Score=35.78 Aligned_cols=46 Identities=7% Similarity=0.074 Sum_probs=38.4
Q ss_pred chhHHHHHHHcCCCcccCCCcccc-ccccCCCCccCceeeEEeE-----eeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHV-IENASSSPVSRNISTIDVV-----MYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~-l~rlL~~L~~~gl~~~~~~-----~y~~t~~s~~ 101 (345)
+.|..+||+.+++ .+.. +.++++.|...|++..+.. .+.+|+.++.
T Consensus 30 ~~t~~eLa~~l~i-------s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~ 81 (95)
T 2pg4_A 30 EPSLAEIVKASGV-------SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRR 81 (95)
T ss_dssp CCCHHHHHHHHCC-------CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHH
T ss_pred CCCHHHHHHHHCC-------CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHH
Confidence 5899999999999 6788 9999999999999984422 5777777765
No 359
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=80.91 E-value=0.094 Score=40.73 Aligned_cols=61 Identities=8% Similarity=-0.084 Sum_probs=45.7
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
.++. +...|...++.+.|..+||+.+++ .+..+.++++.|...|++++..+ .+.+|+.++.
T Consensus 32 ~~~~-vL~~l~~~~~~~~t~~ela~~l~~-------~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~ 99 (139)
T 3eco_A 32 EQGH-TLGYLYAHQQDGLTQNDIAKALQR-------TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIK 99 (139)
T ss_dssp HHHH-HHHHHHHSTTTCEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHH
T ss_pred HHHH-HHHHHHhcCCCCcCHHHHHHHhCC-------CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHH
Confidence 3455 666663333247999999999999 68899999999999999987532 5666666655
No 360
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=80.62 E-value=0.24 Score=38.00 Aligned_cols=61 Identities=8% Similarity=0.012 Sum_probs=47.0
Q ss_pred HHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCc
Q 044482 28 HNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGA 99 (345)
Q Consensus 28 ~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s 99 (345)
++..-.++. |+..| ..+ +.+..+||+.+++ .+..+.+.|+.|...|++..... .|++++..
T Consensus 42 aL~~~~rl~-IL~~L-~~~--~~s~~ela~~lgi-------s~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~ 106 (122)
T 1r1t_A 42 VLADPNRLR-LLSLL-ARS--ELCVGDLAQAIGV-------SESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHH 106 (122)
T ss_dssp HHCCHHHHH-HHHHH-TTC--CBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHH
T ss_pred HhCCHHHHH-HHHHH-HcC--CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHH
Confidence 444555778 88888 543 5899999999999 57889999999999999976532 56666543
No 361
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=80.43 E-value=0.11 Score=40.59 Aligned_cols=59 Identities=7% Similarity=-0.045 Sum_probs=45.3
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
.++. +...| ... ++.|..+||+.+++ .+..+.++++.|...|++++..+ .+.+|+.++.
T Consensus 37 ~q~~-vL~~l-~~~-~~~t~~eLa~~l~~-------~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~ 102 (140)
T 3hsr_A 37 TGYI-VLMAI-END-EKLNIKKLGERVFL-------DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKA 102 (140)
T ss_dssp HHHH-HHHHS-CTT-CEEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHH
T ss_pred HHHH-HHHHH-HHc-CCcCHHHHHHHHCC-------ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHH
Confidence 3455 56667 332 37999999999999 68899999999999999987532 5777777765
No 362
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=80.30 E-value=0.29 Score=38.89 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=39.1
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE--eEeeecCCCccc
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID--VVMYNLFPGAKE 101 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~--~~~y~~t~~s~~ 101 (345)
.+.|.++||+++++ .+..+++++..|...|+++.. .+.|.++.-.+.
T Consensus 29 ~~~~~~~iA~~~~i-------~~~~l~kil~~L~~~Glv~s~rG~GGy~L~~~p~~ 77 (149)
T 1ylf_A 29 SLCTSDYMAESVNT-------NPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDLHE 77 (149)
T ss_dssp GGCCHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEEEC---CCEEESSCGGG
T ss_pred CCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCcEEEccCCCceEeCCChhh
Confidence 47899999999999 789999999999999999764 347888766544
No 363
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=80.29 E-value=1.1 Score=40.19 Aligned_cols=68 Identities=22% Similarity=0.356 Sum_probs=47.4
Q ss_pred cCCCchhhhhhcCHHHHHHHHHHHHHh---------hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccc
Q 044482 4 HNGLHLFDYASKDARLQNLFNQSMHNH---------TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVI 73 (345)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~f~~~~~l~---------~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l 73 (345)
.+|.++|+++.++|+....|...| -. ..+.+.+ -.+||.++|.|.....|+++.+-.+.+..|.+..+
T Consensus 127 ~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~ 203 (334)
T 2ip2_A 127 AFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSL 203 (334)
T ss_dssp HHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCT
T ss_pred hcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHH
Confidence 357889999999999999998877 22 1122332 46788888888899999998765444444444333
No 364
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=80.19 E-value=0.15 Score=36.65 Aligned_cols=44 Identities=5% Similarity=0.041 Sum_probs=36.8
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
|.++|... | .++++|||+.+++ .+.-++|.|+.|...|++.+..
T Consensus 7 Il~~L~~~-g-~vsv~eLA~~l~V-------S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQ-G-RMEAKQLSARLQT-------PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHS-C-SEEHHHHHHHTTC-------CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHc-C-CCcHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEEe
Confidence 55666333 3 5999999999999 6889999999999999998764
No 365
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=80.10 E-value=6.9 Score=36.01 Aligned_cols=92 Identities=12% Similarity=0.073 Sum_probs=60.6
Q ss_pred ceEEecCCccHHHHHHHHHCCCCe-EEEeeh-hhHhhhCC----CceEEeccCCcC----C-----C-CC-CEEEecccc
Q 044482 182 KLVDVASCLGANMSLIVNTYPQIT-GINFDL-PYVIKNAP----CVEHVEGDMFVN----V-----P-SG-QAIFTKSVL 244 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~~p~~~-~~~~Dl-p~~i~~a~----ri~~~~gd~~~~----~-----p-~~-D~i~~~~vl 244 (345)
+++|+-||.|.++..+.++. .+ +..+|. +..++..+ ...++.+|+.+- + + .. |+++..--+
T Consensus 4 ~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPC 81 (376)
T 3g7u_A 4 NVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPC 81 (376)
T ss_dssp EEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCC
T ss_pred eEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCC
Confidence 69999999999999999884 44 457777 44444322 567788888762 1 2 23 999988777
Q ss_pred ccCCh-------hHHHHHHH---HHHhhCCCCCCCcEEEEEeccCCC
Q 044482 245 LNWSD-------EQCLKILK---NCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 245 h~~~d-------~~~~~iL~---~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
..|+- +..-.++. ++.+.++| +++++ |.|..
T Consensus 82 Q~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P-----~~~v~-ENV~g 122 (376)
T 3g7u_A 82 QGFSSIGKGNPDDSRNQLYMHFYRLVSELQP-----LFFLA-ENVPG 122 (376)
T ss_dssp CTTC-------CHHHHHHHHHHHHHHHHHCC-----SEEEE-EECTT
T ss_pred CCcccccCCCCCCchHHHHHHHHHHHHHhCC-----CEEEE-ecchH
Confidence 76652 11222332 35556688 68888 77644
No 366
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=79.95 E-value=0.12 Score=40.17 Aligned_cols=60 Identities=8% Similarity=-0.027 Sum_probs=44.3
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. +...|...++.+.|..+||+.+++ .+..+.++++.|...|+++...+ .+.+|+.+..
T Consensus 36 ~~~-iL~~l~~~~~~~~~~~ela~~l~~-------~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~ 102 (141)
T 3bro_A 36 QMT-IIDYLSRNKNKEVLQRDLESEFSI-------KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANK 102 (141)
T ss_dssp HHH-HHHHHHHTTTSCCBHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHT
T ss_pred HHH-HHHHHHHCCCCCcCHHHHHHHHCC-------CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHH
Confidence 454 566663333336899999999999 67889999999999999987542 4556665544
No 367
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=79.68 E-value=0.19 Score=39.17 Aligned_cols=46 Identities=9% Similarity=0.043 Sum_probs=38.7
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~ 101 (345)
+.|..+||+++++ .+..+.+.++.|...|++.+....|.+|+.+..
T Consensus 31 ~~s~~ela~~l~i-------s~~tv~~~l~~Le~~Gli~r~~~~~~Lt~~g~~ 76 (139)
T 2x4h_A 31 GAKINRIAKDLKI-------APSSVFEEVSHLEEKGLVKKKEDGVWITNNGTR 76 (139)
T ss_dssp CBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTEEEECHHHHH
T ss_pred CcCHHHHHHHhCC-------ChHHHHHHHHHHHHCCCEEecCCeEEEChhHHH
Confidence 6899999999999 678899999999999999886556666665543
No 368
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=79.55 E-value=0.05 Score=41.23 Aligned_cols=58 Identities=5% Similarity=0.001 Sum_probs=46.8
Q ss_pred ccccccceeeccCCCchhHHHHHHHc--CCCcccCCCccccccccCCCCccCceeeEEeE-eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTY--SQIRGINFDLPHVIENASSSPVSRNISTIDVV-MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~--~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-~y~~t~~s~~ 101 (345)
+-. |.+.|...| +.|+.+||+.+ ++ .+..+.+-|+.|...|+++..+. .|++|+.+..
T Consensus 15 d~~-IL~~L~~~g--~~s~~eLA~~l~~gi-------S~~aVs~rL~~Le~~GLV~~~~rg~Y~LT~~G~~ 75 (111)
T 3b73_A 15 DDR-ILEIIHEEG--NGSPKELEDRDEIRI-------SKSSVSRRLKKLADHDLLQPLANGVYVITEEGEA 75 (111)
T ss_dssp HHH-HHHHHHHHS--CBCHHHHHTSTTCCS-------CHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHH
T ss_pred HHH-HHHHHHHcC--CCCHHHHHHHHhcCC-------CHHHHHHHHHHHHHCCCEEecCCceEEECchHHH
Confidence 445 777773333 68999999999 88 57899999999999999987543 7999988876
No 369
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=78.68 E-value=0.28 Score=36.91 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=43.2
Q ss_pred ccceeeccCCCchhHHHHHHHc-CCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTY-SQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~-~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
|...| ..| +.+..+||+.+ ++ .+..+.+.|+.|...|+++.... .|.+|+.+..
T Consensus 27 IL~~L-~~~--~~~~~eLa~~l~~i-------s~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~ 88 (112)
T 1z7u_A 27 LMDEL-FQG--TKRNGELMRALDGI-------TQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYA 88 (112)
T ss_dssp HHHHH-HHS--CBCHHHHHHHSTTC-------CHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHH
T ss_pred HHHHH-HhC--CCCHHHHHHHhccC-------CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHH
Confidence 55556 333 58999999999 98 68899999999999999977542 6888887765
No 370
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=78.64 E-value=2 Score=37.43 Aligned_cols=89 Identities=19% Similarity=0.217 Sum_probs=60.1
Q ss_pred ccceEEecCCccHHHHHHHHH-------CCCCeEEEeeh----hhH------------------------hh-------h
Q 044482 180 LKKLVDVASCLGANMSLIVNT-------YPQITGINFDL----PYV------------------------IK-------N 217 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~-------~p~~~~~~~Dl----p~~------------------------i~-------~ 217 (345)
...|+++|+-.|..+..+++. .++-+++++|. |+. ++ .
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 368999999999988886642 46778999994 321 01 0
Q ss_pred -C------CCceEEeccCCcCCC-------CC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 218 -A------PCVEHVEGDMFVNVP-------SG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 218 -a------~ri~~~~gd~~~~~p-------~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. .+|+++.|++.+.+| .. |++++-. ++ -+.....|..+...|.| ||.|++-
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~---D~-Y~~t~~~le~~~p~l~~---GGvIv~D 216 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL---DL-YEPTKAVLEAIRPYLTK---GSIVAFD 216 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC---CC-HHHHHHHHHHHGGGEEE---EEEEEES
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC---cc-cchHHHHHHHHHHHhCC---CcEEEEc
Confidence 0 179999999987433 22 6666554 22 23346789999999999 7644444
No 371
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=78.62 E-value=0.2 Score=35.28 Aligned_cols=43 Identities=7% Similarity=-0.077 Sum_probs=34.8
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID 89 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~ 89 (345)
|.+.| ...+ +.|..|||+.+++ .+..+.+.|+.|...|++...
T Consensus 5 Il~~L-~~~~-~~s~~eLa~~lgv-------s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 5 ILEFL-NRHN-GGKTAEIAEALAV-------TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHH-HHSC-CCCHHHHHHHHTS-------CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHH-HHcC-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEe
Confidence 45555 3223 5899999999999 578899999999999999864
No 372
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=78.49 E-value=0.16 Score=41.08 Aligned_cols=59 Identities=3% Similarity=-0.082 Sum_probs=44.7
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. |...|...+ ++.|..+||+.+++ .+..+.++++.|...|++++..+ .+.+|+.++.
T Consensus 55 q~~-vL~~L~~~~-~~~t~~eLa~~l~i-------~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~ 120 (166)
T 3deu_A 55 HWV-TLHNIHQLP-PDQSQIQLAKAIGI-------EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEP 120 (166)
T ss_dssp HHH-HHHHHHHSC-SSEEHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHH
T ss_pred HHH-HHHHHHHcC-CCCCHHHHHHHHCC-------CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHH
Confidence 454 555663212 36999999999999 68899999999999999987532 5777777765
No 373
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=78.01 E-value=0.35 Score=35.98 Aligned_cols=54 Identities=6% Similarity=0.001 Sum_probs=43.0
Q ss_pred ccceeeccCCCchhHHHHHHHcC-CCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYS-QIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~-~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
|...| .. | +.+..|||+.++ + .+..+.+.|+.|...|++++... .|.+|+.++.
T Consensus 30 IL~~L-~~-~-~~~~~eL~~~l~gi-------s~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~ 91 (107)
T 2fsw_A 30 IIFQI-NR-R-IIRYGELKRAIPGI-------SEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEK 91 (107)
T ss_dssp HHHHH-TT-S-CEEHHHHHHHSTTC-------CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHT
T ss_pred HHHHH-Hh-C-CcCHHHHHHHcccC-------CHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHH
Confidence 45555 33 2 689999999995 8 68899999999999999987542 6888888765
No 374
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=77.89 E-value=0.34 Score=33.97 Aligned_cols=35 Identities=6% Similarity=-0.208 Sum_probs=31.5
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
+.|+.|||+++|+ .+..+++-|..|...|++....
T Consensus 24 ~psv~EIa~~lgv-------S~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 24 PVKTRDIADAAGL-------SIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp CEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEES
T ss_pred CcCHHHHHHHHCC-------CHHHHHHHHHHHHHCCcEEecC
Confidence 6799999999999 4677999999999999998864
No 375
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=77.87 E-value=0.16 Score=39.27 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=44.1
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
.++. +...| ...+ +.|..+||+.++. .+..+.+.++.|...|+++.... .+.+|+.++.
T Consensus 34 ~~~~-iL~~l-~~~~-~~~~~ela~~l~~-------~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~ 99 (139)
T 3bja_A 34 VQFG-VIQVL-AKSG-KVSMSKLIENMGC-------VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEE 99 (139)
T ss_dssp HHHH-HHHHH-HHSC-SEEHHHHHHHCSS-------CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHH
T ss_pred HHHH-HHHHH-HHcC-CcCHHHHHHHHCC-------ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHH
Confidence 3455 66667 3333 6899999999999 67889999999999999987532 4666666654
No 376
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=77.05 E-value=7.7 Score=36.16 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=54.1
Q ss_pred cceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCcC--C-----CCCCEEEeccccccCCh
Q 044482 181 KKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFVN--V-----PSGQAIFTKSVLLNWSD 249 (345)
Q Consensus 181 ~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~~--~-----p~~D~i~~~~vlh~~~d 249 (345)
.+|+=+|+|. |......+.+. +..++++|. |+.++.++ .+.++.||..++ + ..+|++++. .++
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~-g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~-----~~~ 78 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSS-GVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINA-----IDD 78 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT-TCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEEC-----CSS
T ss_pred CeEEEECCCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEEC-----CCC
Confidence 4678888754 33333344443 568999998 77777665 788899998772 1 133776654 234
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++....+....+.+.| ..++++.
T Consensus 79 ~~~n~~i~~~ar~~~p---~~~Iiar 101 (413)
T 3l9w_A 79 PQTNLQLTEMVKEHFP---HLQIIAR 101 (413)
T ss_dssp HHHHHHHHHHHHHHCT---TCEEEEE
T ss_pred hHHHHHHHHHHHHhCC---CCeEEEE
Confidence 4444445556667788 7677665
No 377
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=76.93 E-value=0.17 Score=35.59 Aligned_cols=43 Identities=14% Similarity=0.120 Sum_probs=36.4
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID 89 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~ 89 (345)
|.+.|... | .++++|||+.+++ .+.-++|-|+.|...|++.+.
T Consensus 7 Il~~L~~~-g-~vsv~eLa~~l~V-------S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR-G-RMEAAQISQTLNT-------PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS-C-SBCHHHHHHHTTC-------CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc-C-CCcHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEe
Confidence 55666333 3 5899999999999 688999999999999999886
No 378
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=76.64 E-value=0.21 Score=38.39 Aligned_cols=51 Identities=4% Similarity=0.010 Sum_probs=40.3
Q ss_pred hhhccccccceeeccCCCc-hhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 31 TAIGFEELNELVDVAGGLG-VNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 31 ~a~~l~~lfd~L~~~gg~~-~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
+..+.. |...| ...+.+ .|..|||+++++ ....+.|.|+.|...|++.+..
T Consensus 25 t~~e~~-il~~L-~~~~~~~~t~~eLa~~l~~-------s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 25 TKADLN-VMKSF-LNEPDRWIDTDALSKSLKL-------DVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp CHHHHH-HHHHH-HHSTTCCEEHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHH-HHHHH-HHCCCCCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEeeC
Confidence 344666 77777 332335 899999999999 6789999999999999998754
No 379
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=76.59 E-value=5.3 Score=36.23 Aligned_cols=94 Identities=7% Similarity=-0.032 Sum_probs=56.8
Q ss_pred cceEEecCCccHHHHHHHHHCCCC-eEEEeeh-hhHhhhCC----CceEEeccCCcC----CC--CCCEEEeccccccCC
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQI-TGINFDL-PYVIKNAP----CVEHVEGDMFVN----VP--SGQAIFTKSVLLNWS 248 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~----ri~~~~gd~~~~----~p--~~D~i~~~~vlh~~~ 248 (345)
.+++|+-||.|.++..+.++.-+. .+..+|. +..++..+ ...++.+|+.+- ++ +-|+++..--+..|+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS 82 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence 479999999999999999885322 3677787 55444433 456788888762 22 239999887766655
Q ss_pred hhH--------HHHHHH---HHHhhCC--CCCCCcEEEEEeccCC
Q 044482 249 DEQ--------CLKILK---NCYDALP--KSRKHGRTQLRSKRGL 280 (345)
Q Consensus 249 d~~--------~~~iL~---~~~~aL~--p~~~gG~lli~~d~~~ 280 (345)
-.. .-.++. ++.+.++ | ++++. |.|.
T Consensus 83 ~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P-----~~~~~-ENV~ 121 (343)
T 1g55_A 83 RIGRQGDMTDSRTNSFLHILDILPRLQKLP-----KYILL-ENVK 121 (343)
T ss_dssp -------------CHHHHHHHHGGGCSSCC-----SEEEE-EEET
T ss_pred hcCCcCCccCccchHHHHHHHHHHHhcCCC-----CEEEE-eCCc
Confidence 321 112333 3455666 7 57777 7664
No 380
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=76.45 E-value=0.25 Score=38.59 Aligned_cols=46 Identities=11% Similarity=-0.005 Sum_probs=39.9
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-EeeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-VMYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-~~y~~t~~s~~ 101 (345)
+.|..+||+++++ .+..+.++++.|...|++.+.. ..|.+|+.+..
T Consensus 22 ~~~~~ela~~l~v-------s~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~g~~ 68 (142)
T 1on2_A 22 YARVSDIAEALAV-------HPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKK 68 (142)
T ss_dssp SCCHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHH
T ss_pred CCCHHHHHHHhCC-------CHHHHHHHHHHHHHCCCEEEeeCceEEEchhHHH
Confidence 5899999999999 6788999999999999998764 47888887765
No 381
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=76.10 E-value=0.44 Score=38.27 Aligned_cols=60 Identities=10% Similarity=-0.018 Sum_probs=43.1
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. +...|...|+++.|..+||+.+++ .+..+.++++.|...|++++... .+.+|+.++.
T Consensus 48 q~~-vL~~l~~~~~~~~t~~eLa~~l~~-------~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~ 114 (168)
T 3u2r_A 48 QYN-TLRLLRSVHPEGMATLQIADRLIS-------RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLK 114 (168)
T ss_dssp HHH-HHHHHHHHTTSCEEHHHHHHHC----------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHH
T ss_pred HHH-HHHHHHhcCCCCcCHHHHHHHHCC-------ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHH
Confidence 455 566663332347999999999999 67889999999999999987542 5667776665
No 382
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=75.61 E-value=0.33 Score=37.71 Aligned_cols=59 Identities=5% Similarity=0.049 Sum_probs=44.5
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
.++. +...|... ++.|..+||+.+++ .+..+.++++.|...|++++..+ .+.+|+.++.
T Consensus 38 ~~~~-iL~~l~~~--~~~t~~eLa~~l~~-------~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~ 103 (143)
T 3oop_A 38 EQWS-VLEGIEAN--EPISQKEIALWTKK-------DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRK 103 (143)
T ss_dssp HHHH-HHHHHHHH--SSEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHH
T ss_pred HHHH-HHHHHHHc--CCcCHHHHHHHHCC-------CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHH
Confidence 3454 56666333 26899999999999 68899999999999999987532 5667766655
No 383
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=74.93 E-value=0.17 Score=40.03 Aligned_cols=59 Identities=7% Similarity=-0.010 Sum_probs=44.3
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
.++. +...| ...+ +.|..+||+.+++ .+..+.++++.|...|++++... .+.+|+.++.
T Consensus 44 ~~~~-iL~~l-~~~~-~~t~~ela~~l~i-------~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~ 109 (155)
T 3cdh_A 44 PEWR-VLACL-VDND-AMMITRLAKLSLM-------EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRA 109 (155)
T ss_dssp HHHH-HHHHH-SSCS-CBCHHHHHHHTTC-------CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHH
T ss_pred HHHH-HHHHH-HHCC-CcCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHH
Confidence 3555 66667 3323 6899999999999 67889999999999999987431 4666666654
No 384
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=74.68 E-value=0.19 Score=39.24 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=42.5
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---E----eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---V----MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~----~y~~t~~s~~ 101 (345)
++. |...| ..++ .|..+||+.+++ .+..+.++++.|...|++++.. + .+.+|+.+..
T Consensus 40 ~~~-iL~~l-~~~~--~t~~eLa~~l~~-------s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~ 103 (146)
T 3tgn_A 40 QEH-ILMLL-SEES--LTNSELARRLNV-------SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARP 103 (146)
T ss_dssp HHH-HHHHH-TTCC--CCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHH
T ss_pred HHH-HHHHH-HhCC--CCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHH
Confidence 344 55566 3333 899999999999 6888999999999999997643 1 6777777665
No 385
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=74.64 E-value=1.9 Score=39.40 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=53.9
Q ss_pred ccCC--CchhhhhhcCHHHHHH----HHHHHH-------HhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCc
Q 044482 3 AHNG--LHLFDYASKDARLQNL----FNQSMH-------NHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDL 69 (345)
Q Consensus 3 ~~~g--~~~~~~~~~~~~~~~~----f~~~~~-------l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~ 69 (345)
..+| .++|+++.++|+.... |...|. +......+ .-.+||.++|.|..+..|+++.+-.+.+..|.
T Consensus 133 ~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~-~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 211 (363)
T 3dp7_A 133 KVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIVFSHH-PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL 211 (363)
T ss_dssp GGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCCCHHHHHHHGGGC-CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC
T ss_pred cccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhhHHHHHHHhcccC-CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC
Confidence 3456 6899999999997763 444432 22223345 56789999999999999999987656666666
Q ss_pred cccccccCCCCccCc
Q 044482 70 PHVIENASSSPVSRN 84 (345)
Q Consensus 70 ~~~l~rlL~~L~~~g 84 (345)
|..+...-+.+...|
T Consensus 212 ~~~~~~a~~~~~~~~ 226 (363)
T 3dp7_A 212 PQQLEMMRKQTAGLS 226 (363)
T ss_dssp HHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcC
Confidence 655544443333333
No 386
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=74.10 E-value=0.23 Score=34.45 Aligned_cols=51 Identities=8% Similarity=0.066 Sum_probs=41.6
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-eeecC
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-MYNLF 96 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-~y~~t 96 (345)
|.++| .+.|.|++..+||+.+|+ +-.-+.+.+..|-..|.+..... .|.++
T Consensus 24 VLe~L-keaG~PlkageIae~~Gv-------dKKeVdKaik~LKkEgkI~SPkRCyw~~~ 75 (80)
T 2lnb_A 24 ILQVL-TEAGSPVKLAQLVKECQA-------PKRELNQVLYRMKKELKVSLTSPATWCLG 75 (80)
T ss_dssp HHHHH-HHHTSCEEHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEEEEETTEEEES
T ss_pred HHHHH-HHcCCCCCHHHHHHHHCC-------CHHHHHHHHHHHHHcCCccCCCCceeeCC
Confidence 66677 444579999999999999 67889999999999998876654 77765
No 387
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=74.02 E-value=0.54 Score=37.46 Aligned_cols=59 Identities=5% Similarity=0.022 Sum_probs=45.3
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
.++. +...|... + +.|..+||+.+++ .+..+.++++.|...|++++..+ .+.+|+.++.
T Consensus 47 ~q~~-iL~~l~~~-~-~~t~~eLa~~l~~-------~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~ 112 (162)
T 3k0l_A 47 PQFT-ALSVLAAK-P-NLSNAKLAERSFI-------KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLD 112 (162)
T ss_dssp HHHH-HHHHHHHC-T-TCCHHHHHHHHTS-------CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHH
T ss_pred HHHH-HHHHHHHC-C-CCCHHHHHHHHCC-------CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHH
Confidence 3455 66667333 3 6899999999999 68889999999999999987642 5677776665
No 388
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=73.96 E-value=0.68 Score=36.66 Aligned_cols=56 Identities=4% Similarity=-0.123 Sum_probs=43.1
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
+.-.|... +++.+..+||+.+++ ++..+.++++.|...|++++..+ ...+|+.++.
T Consensus 36 vL~~L~~~-~~~~~~~eLa~~l~~-------~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~ 98 (151)
T 4aik_A 36 TLYNINRL-PPEQSQIQLAKAIGI-------EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSP 98 (151)
T ss_dssp HHHHHHHS-CTTSCHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHH
T ss_pred HHHHHHHc-CCCCcHHHHHHHHCc-------CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHH
Confidence 44455222 345788999999999 78899999999999999987542 6777887765
No 389
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=73.95 E-value=0.26 Score=35.74 Aligned_cols=48 Identities=10% Similarity=0.015 Sum_probs=38.0
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID 89 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~ 89 (345)
++. |...|...|.++++..+||+++++ +..-+.++|+.|...|++.+.
T Consensus 22 q~~-Vl~~I~~~g~~gi~qkeLa~~~~l-------~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 22 EKL-VYQIIEDAGNKGIWSRDVRYKSNL-------PLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHH-HHHHHHHHCTTCEEHHHHHHHTTC-------CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHH-HHHHHHHcCCCCcCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEEe
Confidence 344 566663333457999999999999 678899999999999999854
No 390
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=73.73 E-value=0.4 Score=35.99 Aligned_cols=57 Identities=7% Similarity=0.091 Sum_probs=44.6
Q ss_pred ccccccceeeccCCCchh--HHHHHHHc-CCCcccCCCccccccccCCCCccCceeeEEe---EeeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVN--MSLIVNTY-SQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t--~~eLA~~~-~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~ 101 (345)
.+. |...| ..| +.+ ..||++.+ ++ .+..+.+.|+.|...|++++.. ..|++|+.++.
T Consensus 29 rl~-IL~~L-~~g--~~~~~~~eL~~~l~gi-------s~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~ 91 (111)
T 3df8_A 29 TML-IISVL-GNG--STRQNFNDIRSSIPGI-------SSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMN 91 (111)
T ss_dssp HHH-HHHHH-TSS--SSCBCHHHHHHTSTTC-------CHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHH
T ss_pred HHH-HHHHH-hcC--CCCCCHHHHHHHccCC-------CHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHHH
Confidence 344 55556 333 456 99999999 88 6889999999999999998873 47888888865
No 391
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=73.68 E-value=0.63 Score=36.05 Aligned_cols=58 Identities=9% Similarity=-0.079 Sum_probs=44.2
Q ss_pred cccccccee-eccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELV-DVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L-~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. +...| ... ++.|..+||+.+++ .+..+.++++.|...|+++.... .+.+|+.+..
T Consensus 39 ~~~-iL~~l~~~~--~~~t~~~la~~l~~-------s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~ 104 (146)
T 2fbh_A 39 RWL-VLLHLARHR--DSPTQRELAQSVGV-------EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADV 104 (146)
T ss_dssp HHH-HHHHHHHCS--SCCBHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHH
T ss_pred HHH-HHHHHHHcC--CCCCHHHHHHHhCC-------ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHH
Confidence 444 55556 332 36899999999999 67889999999999999987542 4677777665
No 392
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=73.52 E-value=0.67 Score=30.04 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=36.8
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCc
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGA 99 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s 99 (345)
.|+|+.|+|+..++ .-+..+..|..|-+.|-+.+...+|++.|--
T Consensus 17 QGMTaGEVAA~f~w-------~Le~ar~aLeqLf~~G~LRKRsSRYrlkphl 61 (68)
T 3i71_A 17 QGMTAGEVAAHFGW-------PLEKARNALEQLFSAGTLRKRSSRYRLKPHL 61 (68)
T ss_dssp TCBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEECCEEEECC--
T ss_pred ccccHHHHHHHhCC-------cHHHHHHHHHHHHhcchhhhhccccccCcch
Confidence 46999999999999 4566677788888999999999999887643
No 393
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=73.01 E-value=0.46 Score=36.90 Aligned_cols=54 Identities=9% Similarity=0.010 Sum_probs=43.0
Q ss_pred ccceeeccCCCchhHHHHHHHc-CCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTY-SQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~-~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
|...| .. | +.+..||++.+ ++ .+..+.+.|+.|...|++++... .|.+|+.++.
T Consensus 40 IL~~L-~~-g-~~~~~eLa~~l~gi-------s~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~ 101 (131)
T 1yyv_A 40 ILVAL-RD-G-THRFSDLRRXMGGV-------SEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQ 101 (131)
T ss_dssp HHHHG-GG-C-CEEHHHHHHHSTTC-------CHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHH
T ss_pred HHHHH-Hc-C-CCCHHHHHHHhccC-------CHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHH
Confidence 55556 33 3 58999999999 68 68899999999999999977542 7888887765
No 394
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=72.72 E-value=0.12 Score=40.69 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=43.1
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
.++. +...|... +.++|..+||+++++ .+..+.++++.|...|++++... .+.+|+.++.
T Consensus 40 ~q~~-vL~~l~~~-~~~~t~~eLa~~l~i-------~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~ 106 (150)
T 3fm5_A 40 RSYS-VLVLACEQ-AEGVNQRGVAATMGL-------DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRR 106 (150)
T ss_dssp HHHH-HHHHHHHS-TTCCCSHHHHHHHTC-------CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHH
T ss_pred HHHH-HHHHHHhC-CCCcCHHHHHHHHCC-------CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHH
Confidence 3455 55566323 336899999999999 68899999999999999976432 4667766655
No 395
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=72.55 E-value=0.62 Score=35.80 Aligned_cols=58 Identities=9% Similarity=0.035 Sum_probs=44.5
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. ++..|... + +.|..+||+.+++ .+..+.++++.|...|+++.... .|.+|+.+..
T Consensus 40 ~~~-iL~~l~~~-~-~~t~~ela~~l~~-------~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~ 104 (140)
T 2nnn_A 40 QWA-ALVRLGET-G-PCPQNQLGRLTAM-------DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRA 104 (140)
T ss_dssp HHH-HHHHHHHH-S-SBCHHHHHHHTTC-------CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHH
T ss_pred HHH-HHHHHHHc-C-CCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHH
Confidence 455 66667333 3 6899999999999 67899999999999999987532 4667766654
No 396
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=72.53 E-value=0.71 Score=34.80 Aligned_cols=54 Identities=6% Similarity=-0.055 Sum_probs=43.2
Q ss_pred HHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 26 SMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 26 ~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
..++....++. |+..| .. + +.+..+||+++++ .+..+.+.|+.|...|++....
T Consensus 26 ~~~l~~~~~~~-il~~L-~~-~-~~s~~ela~~l~i-------s~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 26 LQALATPSRLM-ILTQL-RN-G-PLPVTDLAEAIGM-------EQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp HHHHCCHHHHH-HHHHH-HH-C-CCCHHHHHHHHSS-------CHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHhCCHHHHH-HHHHH-HH-C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEEe
Confidence 34455566788 88888 54 2 5799999999999 6789999999999999997653
No 397
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=72.52 E-value=0.22 Score=39.73 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=44.2
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. |...| ...+ +.|..+||+.+++ .+..+.++++.|...|++++... .+.+|+.++.
T Consensus 54 ~~~-iL~~l-~~~~-~~t~~ela~~l~i-------s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~ 118 (162)
T 3cjn_A 54 KMR-ALAIL-SAKD-GLPIGTLGIFAVV-------EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRA 118 (162)
T ss_dssp HHH-HHHHH-HHSC-SEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHH
T ss_pred HHH-HHHHH-HHCC-CCCHHHHHHHHCC-------ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHH
Confidence 555 66677 3333 6899999999999 67889999999999999987532 4666666554
No 398
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=72.41 E-value=0.29 Score=37.57 Aligned_cols=60 Identities=7% Similarity=-0.022 Sum_probs=44.7
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. +...|....+++.|..+||+.+++ .+..+.++++.|...|++++..+ .+.+|+.++.
T Consensus 39 q~~-vL~~l~~~~~~~~t~~eLa~~l~~-------~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~ 105 (127)
T 2frh_A 39 EFA-VLTYISENKEKEYYLKDIINHLNY-------KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRK 105 (127)
T ss_dssp HHH-HHHHHHHTCCSEEEHHHHHHHSSS-------HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHH
T ss_pred HHH-HHHHHHhccCCCcCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHH
Confidence 444 555563321246899999999999 68899999999999999977421 5677777765
No 399
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=71.83 E-value=0.2 Score=39.38 Aligned_cols=59 Identities=10% Similarity=-0.023 Sum_probs=44.2
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
.++. +...| ...+ +.|..+||+.+++ .+..+.++++.|...|++++... .+.+|+.+..
T Consensus 41 ~~~~-iL~~l-~~~~-~~t~~ela~~l~~-------~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~ 106 (152)
T 3bj6_A 41 GQRA-ILEGL-SLTP-GATAPQLGAALQM-------KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEA 106 (152)
T ss_dssp HHHH-HHHHH-HHST-TEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHH
T ss_pred HHHH-HHHHH-HhCC-CCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHH
Confidence 3555 66667 3333 6899999999999 67889999999999999987532 4556655544
No 400
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=71.76 E-value=0.23 Score=38.62 Aligned_cols=59 Identities=8% Similarity=-0.127 Sum_probs=44.3
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
.++. ++..| ...+ +.|..+||+.+++ .+..+.++++.|...|++..... .+.+|+.+..
T Consensus 30 ~~~~-iL~~l-~~~~-~~t~~~la~~l~~-------s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~ 95 (144)
T 1lj9_A 30 GQYL-YLVRV-CENP-GIIQEKIAELIKV-------DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKN 95 (144)
T ss_dssp THHH-HHHHH-HHST-TEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHH
T ss_pred HHHH-HHHHH-HHCc-CcCHHHHHHHHCC-------CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHH
Confidence 3455 66666 3333 6899999999999 67899999999999999987542 4666666654
No 401
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=71.71 E-value=0.6 Score=35.81 Aligned_cols=58 Identities=5% Similarity=-0.035 Sum_probs=44.0
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. +...| ..++ +.|..+||+.+++ .+..+.++++.|...|+++.... .+.+|+.+..
T Consensus 31 ~~~-iL~~l-~~~~-~~~~~ela~~l~~-------s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~ 95 (138)
T 3bpv_A 31 QVA-CLLRI-HREP-GIKQDELATFFHV-------DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEE 95 (138)
T ss_dssp HHH-HHHHH-HHST-TCBHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHH
T ss_pred HHH-HHHHH-HHcC-CCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHH
Confidence 455 56666 3333 6899999999999 67889999999999999987532 4666666654
No 402
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=71.53 E-value=13 Score=33.35 Aligned_cols=118 Identities=12% Similarity=0.070 Sum_probs=70.5
Q ss_pred cceEEecCCccHHHHHHHHHCCCCe-EEEeeh-hhHhhhCC-Cc-eEEeccCCcC----CCCCCEEEeccccccCCh---
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQIT-GINFDL-PYVIKNAP-CV-EHVEGDMFVN----VPSGQAIFTKSVLLNWSD--- 249 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~-~~~~Dl-p~~i~~a~-ri-~~~~gd~~~~----~p~~D~i~~~~vlh~~~d--- 249 (345)
-+++|+-||.|.++..+.++. .+ +..+|. +..++..+ +. ....+|+.+- +|+-|+++..--+..|+.
T Consensus 12 ~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~~~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ag~ 89 (327)
T 2c7p_A 12 LRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGK 89 (327)
T ss_dssp CEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCCCBSCGGGSCGGGSCCCSEEEEECCCTTTCTTSC
T ss_pred CcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCCCcCCHHHcCHhhCCCCCEEEECCCCCCcchhcc
Confidence 579999999999999998863 44 456777 44444332 10 1115777652 233499988766665542
Q ss_pred ------hH---HHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHH
Q 044482 250 ------EQ---CLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAM 320 (345)
Q Consensus 250 ------~~---~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~ 320 (345)
+. ...++ ++.+.++| +++++ |.+..-.. ..+..+.+.+.+.|+
T Consensus 90 ~~g~~d~r~~L~~~~~-r~i~~~~P-----~~~~~-ENV~gl~~---------------------~~~~~~~~~i~~~l~ 141 (327)
T 2c7p_A 90 QKGFEDSRGTLFFDIA-RIVREKKP-----KVVFM-ENVKNFAS---------------------HDNGNTLEVVKNTMN 141 (327)
T ss_dssp CCGGGSTTSCHHHHHH-HHHHHHCC-----SEEEE-EEEGGGGT---------------------GGGGHHHHHHHHHHH
T ss_pred cCCCcchhhHHHHHHH-HHHHhccC-----cEEEE-eCcHHHHh---------------------ccccHHHHHHHHHHH
Confidence 21 11222 34455688 68888 76643110 011134567888899
Q ss_pred HCCCCceE
Q 044482 321 AAGFGTIK 328 (345)
Q Consensus 321 ~aGf~~~~ 328 (345)
+.|+.+..
T Consensus 142 ~~GY~v~~ 149 (327)
T 2c7p_A 142 ELDYSFHA 149 (327)
T ss_dssp HTTBCCEE
T ss_pred hCCCEEEE
Confidence 99997643
No 403
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=71.39 E-value=0.61 Score=36.16 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=44.5
Q ss_pred hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 32 AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 32 a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
..++. +...| . .+ +.|..+||+.+++ .+..+.++++.|...|+++.... .+.+|+.+..
T Consensus 37 ~~~~~-iL~~l-~-~~-~~~~~ela~~l~~-------s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~ 102 (146)
T 2gxg_A 37 YLDFL-VLRAT-S-DG-PKTMAYLANRYFV-------TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLE 102 (146)
T ss_dssp HHHHH-HHHHH-T-TS-CBCHHHHHHHTTC-------CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHH
T ss_pred HHHHH-HHHHH-h-cC-CcCHHHHHHHhCC-------CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHH
Confidence 33555 66677 3 33 6899999999999 67889999999999999987532 4556665544
No 404
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=70.69 E-value=0.27 Score=38.32 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=45.7
Q ss_pred hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 32 AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 32 a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
..++. +...| ...+ + |..+||+.+++ .+..+.++++.|...|++++... .+.+|+.++.
T Consensus 37 ~~~~~-iL~~l-~~~~-~-~~~~la~~l~~-------~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~ 102 (144)
T 3f3x_A 37 YLDFS-ILKAT-SEEP-R-SMVYLANRYFV-------TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQ 102 (144)
T ss_dssp HHHHH-HHHHH-HHSC-E-EHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHH
T ss_pred HHHHH-HHHHH-HHCC-C-CHHHHHHHHCC-------ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHH
Confidence 34555 66677 4333 5 99999999999 68899999999999999987542 5777777765
No 405
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=70.69 E-value=0.55 Score=37.26 Aligned_cols=58 Identities=12% Similarity=-0.054 Sum_probs=44.1
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. +...|... ++.|..+||+.+++ .+..+.++++.|...|++++..+ .+.+|+.++.
T Consensus 52 q~~-vL~~l~~~--~~~t~~eLa~~l~~-------~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~ 116 (159)
T 3s2w_A 52 QFP-FLMRLYRE--DGINQESLSDYLKI-------DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKK 116 (159)
T ss_dssp THH-HHHHHHHS--CSEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHH
T ss_pred HHH-HHHHHHHC--CCCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHH
Confidence 444 55566332 36899999999999 68899999999999999987542 5666766654
No 406
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=70.20 E-value=0.69 Score=35.81 Aligned_cols=59 Identities=7% Similarity=-0.022 Sum_probs=45.0
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
.++. +...|... + +.|..+||+.+++ .+..+.++++.|...|+++.... .|.+|+.++.
T Consensus 34 ~~~~-iL~~l~~~-~-~~~~~~la~~l~~-------s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~ 99 (145)
T 2a61_A 34 AQFD-ILQKIYFE-G-PKRPGELSVLLGV-------AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEE 99 (145)
T ss_dssp HHHH-HHHHHHHH-C-CBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHH
T ss_pred HHHH-HHHHHHHc-C-CCCHHHHHHHHCC-------CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHH
Confidence 3555 66667333 3 6899999999999 67889999999999999987532 5677776655
No 407
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=70.20 E-value=0.37 Score=33.84 Aligned_cols=53 Identities=9% Similarity=0.109 Sum_probs=37.5
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV 91 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~ 91 (345)
.++. |.+.|.. .+ +.|..+|+++++.-.++ .+..+.++|+.|...|++++...
T Consensus 10 ~e~~-vL~~L~~-~~-~~t~~ei~~~l~~~~~~---s~~Tv~~~l~rL~~kGlv~r~~~ 62 (82)
T 1p6r_A 10 AELE-VMKVIWK-HS-SINTNEVIKELSKTSTW---SPKTIQTMLLRLIKKGALNHHKE 62 (82)
T ss_dssp HHHH-HHHHHHT-SS-SEEHHHHHHHHHHHSCC---CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHH-HHHHHHc-CC-CCCHHHHHHHHhhcCCc---cHHHHHHHHHHHHHCCCeEEEec
Confidence 3445 6666633 23 68999999999730000 36789999999999999987653
No 408
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=69.89 E-value=0.47 Score=41.12 Aligned_cols=59 Identities=10% Similarity=-0.004 Sum_probs=46.1
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE--eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV--MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~--~y~~t~~s~~ 101 (345)
.++. |...|... + +.|..|||+++++ ++..+.|.|+.|...|++++.+. .|.+|+.+..
T Consensus 153 ~~~~-IL~~L~~~-~-~~s~~eLA~~lgl-------sksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~ 213 (244)
T 2wte_A 153 EEMK-LLNVLYET-K-GTGITELAKMLDK-------SEKTLINKIAELKKFGILTQKGKDRKVELNELGLN 213 (244)
T ss_dssp HHHH-HHHHHHHH-T-CBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHH
T ss_pred HHHH-HHHHHHHc-C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHH
Confidence 3444 55566333 2 5899999999999 68889999999999999988632 6888887765
No 409
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=69.87 E-value=3.6 Score=29.92 Aligned_cols=42 Identities=7% Similarity=-0.026 Sum_probs=33.4
Q ss_pred ch-hHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-eeecCC
Q 044482 49 GV-NMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-MYNLFP 97 (345)
Q Consensus 49 ~~-t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-~y~~t~ 97 (345)
.+ |..+||+++++ ....+.+.|+.|...|+++...+ .+..++
T Consensus 34 ~lps~~eLa~~~~v-------Sr~tvr~al~~L~~~Gli~~~~g~G~~v~~ 77 (102)
T 1v4r_A 34 TLPSVADIRAQFGV-------AAKTVSRALAVLKSEGLVSSRGALGTVVEK 77 (102)
T ss_dssp BCCCHHHHHHHSSS-------CTTHHHHHTTTTTTSSCCEEETTTEEESCS
T ss_pred CCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEeCCCeEEEcc
Confidence 45 89999999999 46789999999999999977643 444433
No 410
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=69.74 E-value=0.66 Score=36.06 Aligned_cols=60 Identities=10% Similarity=0.008 Sum_probs=44.4
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
.++. ++..|....+ +.|..+||+.+++ .+..+.++++.|...|++++... .+.+|+.+..
T Consensus 36 ~~~~-iL~~l~~~~~-~~~~~~la~~l~i-------~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~ 102 (147)
T 2hr3_A 36 SQLV-VLGAIDRLGG-DVTPSELAAAERM-------RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRR 102 (147)
T ss_dssp HHHH-HHHHHHHTTS-CBCHHHHHHHTTC-------CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHH
T ss_pred HHHH-HHHHHHHcCC-CCCHHHHHHHhCC-------ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHH
Confidence 3455 6666733123 6899999999999 67889999999999999987532 4666666654
No 411
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=69.68 E-value=0.45 Score=37.36 Aligned_cols=60 Identities=3% Similarity=-0.112 Sum_probs=45.3
Q ss_pred hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 32 AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 32 a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
..++. +...|... ++.|..+||+.+++ .+..+.++++.|...|++++..+ .+.+|+.++.
T Consensus 41 ~~q~~-iL~~l~~~--~~~~~~eLa~~l~~-------~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~ 107 (149)
T 4hbl_A 41 YSQYL-VMLTLWEE--NPQTLNSIGRHLDL-------SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQ 107 (149)
T ss_dssp HHHHH-HHHHHHHS--SSEEHHHHHHHHTC-------CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHH
T ss_pred HHHHH-HHHHHHHC--CCCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHH
Confidence 33555 66667333 36899999999999 68899999999999999976431 6778887776
No 412
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=69.60 E-value=0.44 Score=37.09 Aligned_cols=61 Identities=10% Similarity=0.056 Sum_probs=45.6
Q ss_pred hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 31 TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 31 ~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
+..++. +...|... + +.|..+||+.+++ .+..+.++++.|...|++++..+ .+.+|+.++.
T Consensus 30 t~~q~~-iL~~l~~~-~-~~t~~eLa~~l~~-------~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~ 97 (145)
T 3g3z_A 30 NYNLFA-VLYTLATE-G-SRTQKHIGEKWSL-------PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKA 97 (145)
T ss_dssp CHHHHH-HHHHHHHH-C-SBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHH
T ss_pred CHHHHH-HHHHHHHC-C-CCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHH
Confidence 334555 66667333 3 5899999999999 68899999999999999987432 4666666654
No 413
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=69.20 E-value=0.68 Score=36.59 Aligned_cols=46 Identities=7% Similarity=0.050 Sum_probs=38.3
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE------eeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV------MYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~------~y~~t~~s~~ 101 (345)
+.+..||++++++ .+..+.+.|+.|...|++++... .|.+|+.++.
T Consensus 37 ~~~~~eLa~~lgi-------s~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~ 88 (146)
T 2f2e_A 37 LTRFGEFQKSLGL-------AKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRA 88 (146)
T ss_dssp CCSHHHHHHHHCC-------CHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHT
T ss_pred CCCHHHHHHHhCC-------CHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHH
Confidence 5899999999999 67889999999999999987642 6777766654
No 414
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=69.20 E-value=0.74 Score=35.42 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=45.0
Q ss_pred hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 32 AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 32 a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
..++. ++..|... + +.|..+||+.+++ .+..+.++++.|...|+++.... .+.+|+.++.
T Consensus 36 ~~~~~-iL~~l~~~-~-~~t~~ela~~l~~-------s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~ 102 (142)
T 2fbi_A 36 EQQWR-VIRILRQQ-G-EMESYQLANQACI-------LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQ 102 (142)
T ss_dssp HHHHH-HHHHHHHH-C-SEEHHHHHHHTTC-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHH
T ss_pred HHHHH-HHHHHHHc-C-CCCHHHHHHHHCC-------CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHH
Confidence 33555 66677332 3 6899999999999 67889999999999999987532 4666666654
No 415
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=68.96 E-value=0.27 Score=38.74 Aligned_cols=58 Identities=7% Similarity=-0.048 Sum_probs=43.9
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. |...| ...+ +.|..+||+.+++ .+..+.++++.|...|++++... .+.+|+.++.
T Consensus 49 ~~~-iL~~l-~~~~-~~t~~ela~~l~~-------s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~ 113 (153)
T 2pex_A 49 QYL-VMLVL-WETD-ERSVSEIGERLYL-------DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRA 113 (153)
T ss_dssp HHH-HHHHH-HHSC-SEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHH
T ss_pred HHH-HHHHH-HhCC-CcCHHHHHHHhCC-------CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHH
Confidence 444 55566 3333 6899999999999 67889999999999999987532 5667776654
No 416
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=68.56 E-value=0.44 Score=36.84 Aligned_cols=35 Identities=6% Similarity=-0.009 Sum_probs=31.3
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID 89 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~ 89 (345)
.+.|.++||+++++ .+..+.+.++.|...|+++..
T Consensus 50 ~~ps~~~LA~~l~~-------s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 50 LFPTPAELAERMTV-------SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SSCCHHHHHHTSSS-------CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEE
Confidence 34699999999999 688999999999999999874
No 417
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=68.11 E-value=0.71 Score=35.42 Aligned_cols=58 Identities=10% Similarity=0.000 Sum_probs=43.9
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. +...|... + +.|..+||+.+++ .+..+.++++.|...|+++.... .+.+|+.++.
T Consensus 36 ~~~-iL~~l~~~-~-~~~~~~la~~l~~-------~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~ 100 (138)
T 1jgs_A 36 QFK-VLCSIRCA-A-CITPVELKKVLSV-------DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAA 100 (138)
T ss_dssp HHH-HHHHHHHH-S-SBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHH
T ss_pred HHH-HHHHHHhc-C-CCCHHHHHHHHCC-------ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHH
Confidence 454 55666332 2 5899999999999 68899999999999999987542 4666666654
No 418
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*
Probab=68.00 E-value=4.9 Score=37.69 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=38.6
Q ss_pred cCchhHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCC-----CCeEEEeeh
Q 044482 147 MLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-----QITGINFDL 211 (345)
Q Consensus 147 ~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-----~~~~~~~Dl 211 (345)
+.|+....|.+.++..-... .+.. +.-+|+++|+|+|.++..+++... ..++++++.
T Consensus 113 TAPeiS~~FGe~la~~~~~~----~~~~----g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~ 174 (432)
T 4f3n_A 113 TAPELSPLFAQTLARPVAQA----LDAS----GTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDL 174 (432)
T ss_dssp SCGGGHHHHHHHHHHHHHHH----HHHH----TCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECT
T ss_pred CchhhhHHHHHHHHHHHHHH----HHhc----CCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 56888888888765442211 1111 135899999999999999886432 236888887
No 419
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=67.88 E-value=0.54 Score=37.04 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=39.2
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
+.|..+||+.+++ ++..+.++++.|...|++++..+ ...+|+.++.
T Consensus 51 ~~t~~eLa~~l~~-------~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~ 103 (147)
T 4b8x_A 51 ELPMSKIGERLMV-------HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGRE 103 (147)
T ss_dssp EEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHH
T ss_pred CcCHHHHHHHHCC-------CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHH
Confidence 6899999999999 78899999999999999987542 5677777765
No 420
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=67.69 E-value=0.82 Score=33.38 Aligned_cols=62 Identities=5% Similarity=0.042 Sum_probs=44.9
Q ss_pred HHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCc
Q 044482 27 MHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGA 99 (345)
Q Consensus 27 ~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s 99 (345)
.++..-.++. |+..|-..| +.++.+||+++|+ .+..+.+-|+.|... ++..... .|++++..
T Consensus 22 ~aL~~~~Rl~-IL~~l~~~~--~~~~~ela~~l~i-------s~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~ 87 (99)
T 2zkz_A 22 KTMAHPMRLK-IVNELYKHK--ALNVTQIIQILKL-------PQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPK 87 (99)
T ss_dssp HHHCSHHHHH-HHHHHHHHS--CEEHHHHHHHHTC-------CHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHH
T ss_pred HHhCCHHHHH-HHHHHHHCC--CcCHHHHHHHHCc-------CHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHH
Confidence 4455566787 885441333 5899999999999 577888999999999 8865432 57776543
No 421
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=67.36 E-value=0.95 Score=33.00 Aligned_cols=35 Identities=6% Similarity=0.095 Sum_probs=31.8
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
+.|..+||+.+++ .+..+.+.|+.|...|++.+..
T Consensus 36 ~~t~~ela~~l~i-------s~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 36 PITSEELADIFKL-------SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp CEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeEeec
Confidence 6899999999999 6788999999999999998754
No 422
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=66.93 E-value=0.21 Score=39.76 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=42.5
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. |...| ...+ +.|..+||+.+++ .+..+.++++.|...|++++... .|.+|+.++.
T Consensus 51 ~~~-iL~~l-~~~~-~~t~~ela~~l~i-------s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~ 115 (162)
T 2fa5_A 51 EWR-VITIL-ALYP-GSSASEVSDRTAM-------DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQ 115 (162)
T ss_dssp HHH-HHHHH-HHST-TCCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHH
T ss_pred HHH-HHHHH-HhCC-CCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHH
Confidence 455 66667 3333 6899999999999 67889999999999999976431 4566665554
No 423
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=66.77 E-value=0.82 Score=35.28 Aligned_cols=59 Identities=8% Similarity=0.029 Sum_probs=44.3
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
.++. +...| ...+ +.|..+||+.+++ .+..+.+.++.|...|+++.... .+.+|+.+..
T Consensus 38 ~~~~-iL~~l-~~~~-~~~~~ela~~l~~-------~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~ 103 (142)
T 2bv6_A 38 PQFL-VLTIL-WDES-PVNVKKVVTELAL-------DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSET 103 (142)
T ss_dssp HHHH-HHHHH-HHSS-EEEHHHHHHHTTC-------CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHH
T ss_pred HHHH-HHHHH-HHcC-CcCHHHHHHHHCC-------ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHH
Confidence 3555 66667 3333 6899999999999 67889999999999999987542 5566665544
No 424
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=66.41 E-value=0.73 Score=36.33 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=36.6
Q ss_pred hHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe--EeeecCCCccc
Q 044482 51 NMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV--VMYNLFPGAKE 101 (345)
Q Consensus 51 t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~--~~y~~t~~s~~ 101 (345)
|.++||++.++ ++..++++|..|...|+++... +.|.++.-.+.
T Consensus 25 s~~~IA~~~~i-------~~~~l~kIl~~L~~aGlv~s~rG~GGy~Lar~p~~ 70 (145)
T 1xd7_A 25 SSEIIADSVNT-------NPVVVRRMISLLKKADILTSRAGVPGASLKKDPAD 70 (145)
T ss_dssp CHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEECCSSSSSCEESSCGGG
T ss_pred CHHHHHHHHCc-------CHHHHHHHHHHHHHCCceEeecCCCCceecCCHHH
Confidence 99999999999 7899999999999999996542 36777655544
No 425
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=65.81 E-value=23 Score=31.43 Aligned_cols=80 Identities=13% Similarity=0.043 Sum_probs=48.5
Q ss_pred cceEEecCCc--cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--Cc-eEEeccCCc-CCCCCCEEEeccccccCChhHHH
Q 044482 181 KKLVDVASCL--GANMSLIVNTYPQITGINFDL-PYVIKNAP--CV-EHVEGDMFV-NVPSGQAIFTKSVLLNWSDEQCL 253 (345)
Q Consensus 181 ~~vlDiGgG~--G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri-~~~~gd~~~-~~p~~D~i~~~~vlh~~~d~~~~ 253 (345)
.+|.=||+|. +.++..+++.....+++++|. ++.++.+. ++ .-...|..+ -....|+|++. .+.....
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVila-----vp~~~~~ 108 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFR 108 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEEC-----SCGGGHH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEe-----CCHHHHH
Confidence 5788888764 334555555543347899998 55555544 22 111223222 23345988876 3455567
Q ss_pred HHHHHHHhhCCC
Q 044482 254 KILKNCYDALPK 265 (345)
Q Consensus 254 ~iL~~~~~aL~p 265 (345)
.+++++...++|
T Consensus 109 ~vl~~l~~~l~~ 120 (314)
T 3ggo_A 109 EIAKKLSYILSE 120 (314)
T ss_dssp HHHHHHHHHSCT
T ss_pred HHHHHHhhccCC
Confidence 789999999999
No 426
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=65.34 E-value=0.87 Score=35.02 Aligned_cols=60 Identities=3% Similarity=-0.083 Sum_probs=45.5
Q ss_pred hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 32 AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 32 a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
..++. ++..| ...+ +.|..+||+.+++ .+..+.+.++.|...|++..... .|.+|+.+..
T Consensus 31 ~~~~~-iL~~l-~~~~-~~~~~ela~~l~i-------s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~ 97 (142)
T 3bdd_A 31 LTRYS-ILQTL-LKDA-PLHQLALQERLQI-------DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQARE 97 (142)
T ss_dssp HHHHH-HHHHH-HHHC-SBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHH
T ss_pred HHHHH-HHHHH-HhCC-CCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHH
Confidence 34555 66677 3323 6899999999999 67889999999999999987642 4666666654
No 427
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=65.29 E-value=10 Score=33.43 Aligned_cols=89 Identities=15% Similarity=-0.056 Sum_probs=60.9
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCcC----CC--CC-CEEEecccc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFVN----VP--SG-QAIFTKSVL 244 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~~----~p--~~-D~i~~~~vl 244 (345)
...+||+=+|+|.++...++ +.-+++.+|+ |..++..+ +++++..|.++. .| +. |+|++-=-.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 46799999999999999998 4468899998 55544322 789999997651 23 23 999886544
Q ss_pred ccCChhHHHHHHHHHHhh--CCCCCCCcEEEEE
Q 044482 245 LNWSDEQCLKILKNCYDA--LPKSRKHGRTQLR 275 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~a--L~p~~~gG~lli~ 275 (345)
..- ++..++++.+.++ +.| +|.++|.
T Consensus 170 e~k--~~~~~vl~~L~~~~~r~~---~Gi~v~W 197 (283)
T 2oo3_A 170 ERK--EEYKEIPYAIKNAYSKFS---TGLYCVW 197 (283)
T ss_dssp CST--THHHHHHHHHHHHHHHCT---TSEEEEE
T ss_pred CCC--cHHHHHHHHHHHhCccCC---CeEEEEE
Confidence 321 2344556655554 346 7877777
No 428
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=65.28 E-value=0.65 Score=36.96 Aligned_cols=59 Identities=8% Similarity=0.045 Sum_probs=44.7
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
.++. +...|... + +.|..+||+.+++ .+..+.++++.|...|++++..+ .+.+|+.++.
T Consensus 54 ~q~~-vL~~l~~~-~-~~t~~eLa~~l~~-------~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~ 119 (161)
T 3e6m_A 54 PKLR-LLSSLSAY-G-ELTVGQLATLGVM-------EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKK 119 (161)
T ss_dssp HHHH-HHHHHHHH-S-EEEHHHHHHHTTC-------CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHH
T ss_pred HHHH-HHHHHHhC-C-CCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHH
Confidence 3555 66666333 3 6899999999999 68899999999999999987532 5666766655
No 429
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=65.26 E-value=0.72 Score=36.46 Aligned_cols=59 Identities=7% Similarity=0.029 Sum_probs=43.2
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. +...|... +++.|..+||+.+++ .+..+.++++.|...|++++... .+.+|+.+..
T Consensus 49 ~~~-iL~~L~~~-~~~~~~~ela~~l~i-------~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~ 114 (160)
T 3boq_A 49 KFD-AMAQLARN-PDGLSMGKLSGALKV-------TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLT 114 (160)
T ss_dssp HHH-HHHHHHHC-TTCEEHHHHHHHCSS-------CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHH
T ss_pred HHH-HHHHHHHc-CCCCCHHHHHHHHCC-------ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHH
Confidence 455 66667212 236999999999999 67889999999999999987532 4666666654
No 430
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=65.06 E-value=0.85 Score=36.60 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=43.7
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. |...|... + +.|..+||+.+++ .+..+.++++.|...|++++... .+.+|+.++.
T Consensus 47 ~~~-iL~~L~~~-~-~~t~~eLa~~l~i-------s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~ 111 (168)
T 2nyx_A 47 QFR-TLVILSNH-G-PINLATLATLLGV-------QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRD 111 (168)
T ss_dssp HHH-HHHHHHHH-C-SEEHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHH
T ss_pred HHH-HHHHHHHc-C-CCCHHHHHHHhCC-------CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHH
Confidence 444 56666333 3 6899999999999 68889999999999999987532 4666666654
No 431
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=64.93 E-value=0.18 Score=40.09 Aligned_cols=46 Identities=2% Similarity=-0.124 Sum_probs=37.9
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-EeeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-VMYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-~~y~~t~~s~~ 101 (345)
+.+..+||+.+++ .+..+.+.++.|...|++.... ..+.+|+.+..
T Consensus 54 ~~~~~~la~~l~v-------s~~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~~ 100 (155)
T 2h09_A 54 EARQVDMAARLGV-------SQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEK 100 (155)
T ss_dssp CCCHHHHHHHHTS-------CHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHH
T ss_pred CcCHHHHHHHhCc-------CHHHHHHHHHHHHHCCCEEEecCCceEEChhHHH
Confidence 5799999999999 6788999999999999998764 36667766654
No 432
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=64.74 E-value=0.58 Score=36.48 Aligned_cols=58 Identities=7% Similarity=0.076 Sum_probs=42.7
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. +...| ...+ +.|..+||+.+++ .+..+.++++.|...|++++... .+.+|+.++.
T Consensus 42 ~~~-iL~~l-~~~~-~~t~~ela~~l~~-------~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~ 106 (148)
T 3nrv_A 42 EWR-IISVL-SSAS-DCSVQKISDILGL-------DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQE 106 (148)
T ss_dssp HHH-HHHHH-HHSS-SBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHH
T ss_pred HHH-HHHHH-HcCC-CCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHH
Confidence 444 55566 3323 6899999999999 68899999999999999976521 5666666654
No 433
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=64.57 E-value=0.39 Score=37.60 Aligned_cols=60 Identities=5% Similarity=-0.019 Sum_probs=37.8
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. +...|...++++.|..+||+.+++ .+..+.++++.|...|++++..+ .+.+|+.++.
T Consensus 43 q~~-vL~~l~~~~~~~~t~~eLa~~l~~-------~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~ 109 (148)
T 3jw4_A 43 QGR-MIGYIYENQESGIIQKDLAQFFGR-------RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAA 109 (148)
T ss_dssp HHH-HHHHHHHHTTTCCCHHHHHHC-------------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHH
T ss_pred HHH-HHHHHHhCCCCCCCHHHHHHHHCC-------ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHH
Confidence 445 555663332247899999999999 67889999999999999976421 4555655554
No 434
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=64.51 E-value=0.92 Score=35.33 Aligned_cols=58 Identities=7% Similarity=-0.027 Sum_probs=43.4
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. ++..|... + +.|..+||+.+++ .+..+.++++.|...|++..... .+.+|+.+..
T Consensus 44 ~~~-iL~~l~~~-~-~~t~~ela~~l~~-------~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~ 108 (150)
T 2rdp_A 44 QFV-ALQWLLEE-G-DLTVGELSNKMYL-------ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGER 108 (150)
T ss_dssp HHH-HHHHHHHH-C-SBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHH
T ss_pred HHH-HHHHHHHc-C-CCCHHHHHHHHCC-------CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHH
Confidence 444 55566333 3 6899999999999 67889999999999999987531 4666666654
No 435
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=64.23 E-value=0.42 Score=35.20 Aligned_cols=55 Identities=7% Similarity=0.009 Sum_probs=41.0
Q ss_pred hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE
Q 044482 31 TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV 91 (345)
Q Consensus 31 ~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~ 91 (345)
+..++. |...|... | +.|..||+++++.-.++ .+..+.++|+.|...|++++...
T Consensus 34 T~~e~~-VL~~L~~~-~-~~t~~eL~~~l~~~~~~---s~sTVt~~L~rLe~KGlV~R~~~ 88 (99)
T 2k4b_A 34 SNAELI-VMRVIWSL-G-EARVDEIYAQIPQELEW---SLATVKTLLGRLVKKEMLSTEKE 88 (99)
T ss_dssp CCSCSH-HHHHHHHH-S-CEEHHHHHHTCCGGGCC---CHHHHHHHHHHHHHTTSCEEEEE
T ss_pred CHHHHH-HHHHHHhC-C-CCCHHHHHHHHhcccCC---CHhhHHHHHHHHHHCCCEEEEeC
Confidence 555777 88888443 3 68999999999861000 35789999999999999987654
No 436
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=63.92 E-value=0.88 Score=37.43 Aligned_cols=63 Identities=6% Similarity=-0.104 Sum_probs=47.7
Q ss_pred hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 31 TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 31 ~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
+..++. +...|....+.++|..+||+.+++ .+..+.++++.|...|++++... .+.+|+.+..
T Consensus 40 t~~q~~-vL~~L~~~~~~~~t~~eLa~~l~i-------s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~ 109 (189)
T 3nqo_A 40 TSRQYM-TILSILHLPEEETTLNNIARKMGT-------SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKK 109 (189)
T ss_dssp CHHHHH-HHHHHHHSCGGGCCHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHH
T ss_pred CHHHHH-HHHHHHhccCCCcCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHH
Confidence 344555 666663211236899999999999 67889999999999999987542 6788888876
No 437
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=63.82 E-value=8.3 Score=34.70 Aligned_cols=116 Identities=14% Similarity=0.076 Sum_probs=72.4
Q ss_pred cceEEecCCccHHHHHHHHHCCCCe-E-EEeeh-hhHhhhCC---CceEEeccCCc-C---CCC--CCEEEeccccccC-
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQIT-G-INFDL-PYVIKNAP---CVEHVEGDMFV-N---VPS--GQAIFTKSVLLNW- 247 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~-~-~~~Dl-p~~i~~a~---ri~~~~gd~~~-~---~p~--~D~i~~~~vlh~~- 247 (345)
-+++|+-||.|.+...+.++.-+.+ + ..+|. +..++.-+ .-.++.+|+.+ . ++. .|+++..--+..|
T Consensus 11 ~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~fs 90 (327)
T 3qv2_A 11 VNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEEVQVKNLDSISIKQIESLNCNTWFMSPPCQPYN 90 (327)
T ss_dssp EEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCCCBCCCTTTCCHHHHHHTCCCEEEECCCCTTCS
T ss_pred CEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCCcccCChhhcCHHHhccCCCCEEEecCCccCcc
Confidence 4799999999999999988742223 3 57887 44443322 22256778765 1 332 3999988777766
Q ss_pred ----------ChhHHHHHHHHHHh----hC--CCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCC
Q 044482 248 ----------SDEQCLKILKNCYD----AL--PKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRT 311 (345)
Q Consensus 248 ----------~d~~~~~iL~~~~~----aL--~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt 311 (345)
.|+. -.++.++.+ .+ +| +++++ |.+..-. .+ .+
T Consensus 91 ~S~ag~~~~~~d~r-~~L~~~~~r~~i~~~~~~P-----~~~~l-ENV~gl~----------------------~~--~~ 139 (327)
T 3qv2_A 91 NSIMSKHKDINDPR-AKSVLHLYRDILPYLINKP-----KHIFI-ENVPLFK----------------------ES--LV 139 (327)
T ss_dssp HHHHTTTCTTTCGG-GHHHHHHHHTTGGGCSSCC-----SEEEE-EECGGGG----------------------GS--HH
T ss_pred cccCCCCCCCcccc-chhHHHHHHHHHHHhccCC-----CEEEE-Echhhhc----------------------Ch--HH
Confidence 2332 234444444 56 67 68888 7664210 00 13
Q ss_pred HHHHHHHHHHCCCCce
Q 044482 312 AGEFKALAMAAGFGTI 327 (345)
Q Consensus 312 ~~e~~~ll~~aGf~~~ 327 (345)
.+.+.+.|++.|+.+.
T Consensus 140 ~~~i~~~l~~~GY~v~ 155 (327)
T 3qv2_A 140 FKEIYNILIKNQYYIK 155 (327)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhCCCEEE
Confidence 5677888899998764
No 438
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=63.79 E-value=42 Score=27.29 Aligned_cols=90 Identities=12% Similarity=0.021 Sum_probs=53.6
Q ss_pred eEEecCCccHHHHHHHHHC--CCCeEEEeeh-hhHhhh-CC-CceEEeccCCcCC-C--CC-CEEEeccccc--cCChhH
Q 044482 183 LVDVASCLGANMSLIVNTY--PQITGINFDL-PYVIKN-AP-CVEHVEGDMFVNV-P--SG-QAIFTKSVLL--NWSDEQ 251 (345)
Q Consensus 183 vlDiGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~-a~-ri~~~~gd~~~~~-p--~~-D~i~~~~vlh--~~~d~~ 251 (345)
||=. ||+|..+..++++. .+.++++++. +.-++. .. +++++.+|+.++- . .+ |+++...-.. ......
T Consensus 3 ilVt-GatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~ 81 (224)
T 3h2s_A 3 IAVL-GATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRGYL 81 (224)
T ss_dssp EEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCTHH
T ss_pred EEEE-cCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCccCCCcchhhH
Confidence 4434 45666666655542 2457888887 333332 22 8999999998732 1 23 8776554332 111233
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 252 CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 252 ~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.....+++.++++.. |++++.+
T Consensus 82 n~~~~~~l~~a~~~~--~~~~v~~ 103 (224)
T 3h2s_A 82 HLDFATHLVSLLRNS--DTLAVFI 103 (224)
T ss_dssp HHHHHHHHHHTCTTC--CCEEEEE
T ss_pred HHHHHHHHHHHHHHc--CCcEEEE
Confidence 566778888888873 5677777
No 439
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=63.72 E-value=0.73 Score=36.02 Aligned_cols=35 Identities=9% Similarity=-0.088 Sum_probs=31.6
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID 89 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~ 89 (345)
.+.|.++||++++. ++.-+.++++.|...|+++..
T Consensus 50 ~~ps~~~LA~~~~~-------s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 50 YFPTPNQLQEGMSI-------SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp CSCCHHHHHTTSSS-------CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEE
Confidence 35699999999999 789999999999999999874
No 440
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=63.65 E-value=0.55 Score=37.08 Aligned_cols=46 Identities=7% Similarity=-0.003 Sum_probs=32.7
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE------eeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV------MYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~------~y~~t~~s~~ 101 (345)
++|..+||+++++ ++..+-++++.|...|+++...+ ...+|+.++.
T Consensus 52 ~~t~~eLa~~l~~-------~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~ 103 (148)
T 4fx0_A 52 DLTMSELAARIGV-------ERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRA 103 (148)
T ss_dssp --CHHHHHHHHTC-------CHHHHHHHHHHHHHTTSBC-----------CCBCHHHHH
T ss_pred CcCHHHHHHHHCC-------ChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHH
Confidence 5899999999999 78899999999999999955432 3445554443
No 441
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=63.35 E-value=0.31 Score=39.85 Aligned_cols=60 Identities=10% Similarity=0.037 Sum_probs=42.9
Q ss_pred ccccccceeeccCC-CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGG-LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg-~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. |...|...++ .+.|..+||+.+++ .+..+.++++.|...|++++... .+.+|+.++.
T Consensus 71 ~~~-iL~~L~~~~~~~~~t~~eLa~~l~i-------s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~ 138 (181)
T 2fbk_A 71 GWD-LLLTLYRSAPPEGLRPTELSALAAI-------SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRA 138 (181)
T ss_dssp HHH-HHHHHHHHCCSSCBCHHHHHHHCSC-------CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHH
T ss_pred HHH-HHHHHHHcCCCCCCCHHHHHHHHCC-------CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHH
Confidence 455 5666633322 13899999999999 67889999999999999976421 4556665554
No 442
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=62.87 E-value=0.79 Score=35.95 Aligned_cols=59 Identities=5% Similarity=0.071 Sum_probs=44.4
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeE--EeE-------eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTI--DVV-------MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~--~~~-------~y~~t~~s~~ 101 (345)
.++. +...|... + +.|..+||+.++. .+..+.++++.|...|++++ ... .+.+|+.++.
T Consensus 42 ~~~~-iL~~l~~~-~-~~t~~eLa~~l~~-------~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~ 109 (154)
T 2qww_A 42 QQLA-MINVIYST-P-GISVADLTKRLII-------TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGED 109 (154)
T ss_dssp HHHH-HHHHHHHS-T-TEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHH
T ss_pred HHHH-HHHHHHHC-C-CCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHH
Confidence 3555 66667333 3 6899999999999 68899999999999999987 321 5667766655
No 443
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=62.75 E-value=1.1 Score=35.19 Aligned_cols=59 Identities=19% Similarity=0.074 Sum_probs=44.3
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
.++. |+..|... + +.|..+||+.+++ .+..+.++++.|...|++++... .+.+|+.++.
T Consensus 45 ~~~~-iL~~l~~~-~-~~t~~ela~~l~i-------s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~ 110 (154)
T 2eth_A 45 TELY-AFLYVALF-G-PKKMKEIAEFLST-------TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKE 110 (154)
T ss_dssp HHHH-HHHHHHHH-C-CBCHHHHHHHTTS-------CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHH
T ss_pred HHHH-HHHHHHHc-C-CCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHH
Confidence 3555 66667333 3 6899999999999 67889999999999999987542 4566666554
No 444
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=62.00 E-value=1.2 Score=32.61 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=36.6
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-----eeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-----MYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-----~y~~t~~s~~ 101 (345)
+.+..+||+++++ +...+.|.|..|...|+++.... ...+|+.++.
T Consensus 36 ~~s~~eLa~~l~l-------~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~ 86 (96)
T 2obp_A 36 PWSLPKIAKRAQL-------PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAA 86 (96)
T ss_dssp CCBHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHH
T ss_pred CcCHHHHHHHhCC-------chhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHH
Confidence 5899999999999 67899999999999999987432 3345555543
No 445
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=61.60 E-value=27 Score=28.35 Aligned_cols=91 Identities=12% Similarity=0.015 Sum_probs=51.2
Q ss_pred eEEecCCccHHHHHHHHHC--CCCeEEEeeh-hhHhhhC-CCceEEeccCCcCCC---CC-CEEEeccccccCChhHHHH
Q 044482 183 LVDVASCLGANMSLIVNTY--PQITGINFDL-PYVIKNA-PCVEHVEGDMFVNVP---SG-QAIFTKSVLLNWSDEQCLK 254 (345)
Q Consensus 183 vlDiGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a-~ri~~~~gd~~~~~p---~~-D~i~~~~vlh~~~d~~~~~ 254 (345)
||=. ||+|..+..++++. .+.++++++. ++-++.. .+++++.+|+.++.. .+ |+++...-...-..+....
T Consensus 3 vlVt-GatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~~ 81 (221)
T 3ew7_A 3 IGII-GATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKHVT 81 (221)
T ss_dssp EEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSHHH
T ss_pred EEEE-cCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCCccccchHHH
Confidence 4434 44566665555442 2457888887 3333322 489999999987321 23 8776554332222222345
Q ss_pred HHHHHHhhCCCCCCCcEEEEE
Q 044482 255 ILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 255 iL~~~~~aL~p~~~gG~lli~ 275 (345)
..+++.++++..+ .++++++
T Consensus 82 ~~~~l~~a~~~~~-~~~~v~~ 101 (221)
T 3ew7_A 82 SLDHLISVLNGTV-SPRLLVV 101 (221)
T ss_dssp HHHHHHHHHCSCC-SSEEEEE
T ss_pred HHHHHHHHHHhcC-CceEEEE
Confidence 5666666776521 4677777
No 446
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=61.51 E-value=0.99 Score=35.37 Aligned_cols=58 Identities=10% Similarity=0.046 Sum_probs=43.6
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. |...|... + +.|..+||+.+++ .+..+.++++.|...|++++... .+.+|+.+..
T Consensus 39 ~~~-iL~~l~~~-~-~~t~~ela~~l~~-------s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~ 103 (155)
T 1s3j_A 39 QLF-VLASLKKH-G-SLKVSEIAERMEV-------KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDI 103 (155)
T ss_dssp HHH-HHHHHHHH-S-EEEHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHH
T ss_pred HHH-HHHHHHHc-C-CCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHH
Confidence 455 66667332 3 6899999999999 68889999999999999987642 4556655544
No 447
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=61.35 E-value=45 Score=29.79 Aligned_cols=90 Identities=11% Similarity=0.046 Sum_probs=56.1
Q ss_pred cccccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--Cce-EEe------ccCCcC----CCCC-CEEEe
Q 044482 177 FKELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVE-HVE------GDMFVN----VPSG-QAIFT 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~-~~~------gd~~~~----~p~~-D~i~~ 240 (345)
.....+||-+|+|. |.++..+++...--++++.|. ++-.+.++ ... ++. .|+.+. .+.+ |+++-
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid 248 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 248 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEE
Confidence 56678899999775 889999999874338888886 54444443 221 111 111111 1124 87764
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
.- ..+ ..++...+.|+| +|+++++ -.
T Consensus 249 ~~-----g~~---~~~~~~~~~l~~---~G~iv~~-G~ 274 (356)
T 1pl8_A 249 CT-----GAE---ASIQAGIYATRS---GGTLVLV-GL 274 (356)
T ss_dssp CS-----CCH---HHHHHHHHHSCT---TCEEEEC-SC
T ss_pred CC-----CCh---HHHHHHHHHhcC---CCEEEEE-ec
Confidence 32 112 357788899999 9999988 54
No 448
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=61.01 E-value=1.6 Score=31.66 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=40.1
Q ss_pred hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 31 TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 31 ~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
+..++. |...|... + +.|..+||+.+++ .+..+.+.++.|...|++....
T Consensus 19 ~~~~~~-il~~l~~~-~-~~s~~ela~~l~i-------s~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 19 KPSDVR-IYSLLLER-G-GMRVSEIARELDL-------SARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp CHHHHH-HHHHHHHH-C-CBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHH-HHHHHHHc-C-CCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEEEe
Confidence 444566 77777333 3 5899999999999 6889999999999999998754
No 449
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=60.75 E-value=8.4 Score=34.50 Aligned_cols=49 Identities=10% Similarity=0.128 Sum_probs=36.1
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP 219 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ 219 (345)
...+++.+. .....|||-=||+|+++.+..+. +.+++++|+ |..++.++
T Consensus 242 ~~~~i~~~~--~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~ 291 (323)
T 1boo_A 242 PEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASA 291 (323)
T ss_dssp HHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHH
Confidence 344555432 34578999999999999998776 468999999 66666555
No 450
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=60.72 E-value=0.94 Score=38.27 Aligned_cols=46 Identities=11% Similarity=0.038 Sum_probs=39.6
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-eeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-MYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-~y~~t~~s~~ 101 (345)
+++..+||+++++ .+..+.+.++.|...|++++... .+.+|+.++.
T Consensus 20 ~~~~~~lA~~l~v-------s~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~G~~ 66 (214)
T 3hrs_A 20 KITNKEIAQLMQV-------SPPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLK 66 (214)
T ss_dssp CCCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHH
T ss_pred CcCHHHHHHHHCC-------ChhHHHHHHHHHHHCCCEEEecCCCeEECHHHHH
Confidence 6899999999999 68889999999999999988753 6777777765
No 451
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=60.07 E-value=0.41 Score=35.63 Aligned_cols=49 Identities=6% Similarity=-0.037 Sum_probs=38.5
Q ss_pred hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE
Q 044482 32 AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID 89 (345)
Q Consensus 32 a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~ 89 (345)
...+. |...+-.. |.+.|..+||+.+|+ ....+.+.|..|...|+++..
T Consensus 18 ~~~l~-Il~~l~~~-g~~~s~~eLa~~lgv-------s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 18 DDVID-VLRILLDK-GTEMTDEEIANQLNI-------KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp STTHH-HHHHHHHH-CSCBCHHHHHHTTTS-------CHHHHHHHHHHHHHHTSCEEE
T ss_pred hHHHH-HHHHHHHc-CCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEE
Confidence 34556 66666223 335899999999999 578899999999999999765
No 452
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=59.54 E-value=0.91 Score=35.53 Aligned_cols=60 Identities=7% Similarity=0.078 Sum_probs=44.3
Q ss_pred hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE---e--E----eeecCCCccc
Q 044482 31 TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID---V--V----MYNLFPGAKE 101 (345)
Q Consensus 31 ~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~---~--~----~y~~t~~s~~ 101 (345)
+..++. +...| ..+ +.|..+||+.+++ .+..+.++++.|...|++++. . + .+.+|+.++.
T Consensus 37 t~~q~~-iL~~l-~~~--~~t~~eLa~~l~~-------~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~ 105 (151)
T 3kp7_A 37 SAEQSH-VLNML-SIE--ALTVGQITEKQGV-------NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKK 105 (151)
T ss_dssp CHHHHH-HHHHH-HHS--CBCHHHHHHHHCS-------CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHH
T ss_pred CHHHHH-HHHHH-HcC--CcCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHH
Confidence 334555 66677 543 6899999999999 678899999999999999852 1 1 4666666654
No 453
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=59.50 E-value=31 Score=30.53 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=55.7
Q ss_pred cccccceEEec--CCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--Cce-EEe---ccCCcC---C--CCC-CEEEec
Q 044482 177 FKELKKLVDVA--SCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVE-HVE---GDMFVN---V--PSG-QAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiG--gG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~-~~~---gd~~~~---~--p~~-D~i~~~ 241 (345)
.....+||-+| ||.|..+..+++.. +.++++.|. ++-++.++ ... .+. .|+.+. . +.+ |+++-.
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~ 224 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDS 224 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEEC
Confidence 66778999998 57788999999876 568999988 55555444 111 111 111110 1 124 776643
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
-- . ..++.+.+.|++ +|+++++ -.
T Consensus 225 ~g-----~----~~~~~~~~~l~~---~G~iv~~-G~ 248 (334)
T 3qwb_A 225 VG-----K----DTFEISLAALKR---KGVFVSF-GN 248 (334)
T ss_dssp CG-----G----GGHHHHHHHEEE---EEEEEEC-CC
T ss_pred CC-----h----HHHHHHHHHhcc---CCEEEEE-cC
Confidence 21 1 247778889999 9999998 44
No 454
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=59.45 E-value=0.57 Score=40.74 Aligned_cols=60 Identities=7% Similarity=0.008 Sum_probs=45.8
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. +...|...++++.|..+||+++++ ++..+-++++-|...|++++..+ ...+|+.++.
T Consensus 160 q~~-vL~~L~~~~~~~~t~~eLa~~l~i-------~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~ 226 (250)
T 1p4x_A 160 EFT-ILAIITSQNKNIVLLKDLIETIHH-------KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQD 226 (250)
T ss_dssp HHH-HHHHHHTTTTCCEEHHHHHHHSSS-------CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHH
T ss_pred HHH-HHHHHHhCCCCCcCHHHHHHHHCC-------ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHH
Confidence 454 555663333335999999999999 78889999999999999987642 5667777765
No 455
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=58.69 E-value=42 Score=28.95 Aligned_cols=80 Identities=14% Similarity=0.054 Sum_probs=46.9
Q ss_pred cceEEecCCc--cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--Cce-EEeccCCcCCCCCCEEEeccccccCChhHHHH
Q 044482 181 KKLVDVASCL--GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVE-HVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLK 254 (345)
Q Consensus 181 ~~vlDiGgG~--G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~-~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~ 254 (345)
.+|.=||+|. +.++..+++..++.++++.|. ++.++.+. .+. ....|..+...+.|+|++. .++.....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILA-----VPIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEEC-----SCHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEc-----CCHHHHHH
Confidence 3577788775 334555666555668899997 55444332 221 1122322222234988775 35555577
Q ss_pred HHHHHHhh-CCC
Q 044482 255 ILKNCYDA-LPK 265 (345)
Q Consensus 255 iL~~~~~a-L~p 265 (345)
+++++... +++
T Consensus 82 v~~~l~~~~l~~ 93 (290)
T 3b1f_A 82 FIKILADLDLKE 93 (290)
T ss_dssp HHHHHHTSCCCT
T ss_pred HHHHHHhcCCCC
Confidence 88888888 888
No 456
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=58.66 E-value=0.97 Score=34.92 Aligned_cols=48 Identities=6% Similarity=-0.145 Sum_probs=36.9
Q ss_pred ccccccceeeccCCCchhHHHHHHHc-----CCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTY-----SQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~-----~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
+.. |.+.| ...+.+.|++||.+++ ++ ...-+.|.|+.|+..|++.+..
T Consensus 13 R~~-Il~~l-~~~~~~~sa~ei~~~l~~~~~~i-------s~~TVYR~L~~L~e~Glv~~~~ 65 (131)
T 2o03_A 13 RAA-ISTLL-ETLDDFRSAQELHDELRRRGENI-------GLTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp HHH-HHHHH-HHCCSCEEHHHHHHHHHHTTCCC-------CHHHHHHHHHHHHTTTSEEEEE
T ss_pred HHH-HHHHH-HhCCCCCCHHHHHHHHHHhCCCC-------CHhhHHHHHHHHHHCCCEEEEE
Confidence 444 66666 3323478999999998 44 4678999999999999998754
No 457
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=58.65 E-value=6.7 Score=35.39 Aligned_cols=71 Identities=14% Similarity=0.305 Sum_probs=47.9
Q ss_pred cCCCchhhhhhcCHHHHHHHHHHHHHh---------hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCcccccc
Q 044482 4 HNGLHLFDYASKDARLQNLFNQSMHNH---------TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIE 74 (345)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~f~~~~~l~---------~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~ 74 (345)
.+|.++|+++..+|+....|...|.-. ..+.+..--.+||.++|.|.....|+++.+-.+++..|.+..+.
T Consensus 141 ~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~ 220 (360)
T 1tw3_A 141 IYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVD 220 (360)
T ss_dssp HHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHH
T ss_pred hcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHH
Confidence 357889999999999999998876422 12222212457888888888899999987654554443344443
No 458
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=58.36 E-value=5.7 Score=36.16 Aligned_cols=91 Identities=16% Similarity=0.134 Sum_probs=56.8
Q ss_pred cccccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--Cce-EEe---ccCCcC---CC-CC-CEEEeccc
Q 044482 177 FKELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVE-HVE---GDMFVN---VP-SG-QAIFTKSV 243 (345)
Q Consensus 177 ~~~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~-~~~---gd~~~~---~p-~~-D~i~~~~v 243 (345)
.....+||-+|+|. |.++..+++...--++++.|. ++-++.++ ... ++. .|+.+. .. .+ |+++-.--
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g 267 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG 267 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCC
Confidence 56678999999876 889999998763336888886 55555544 222 111 121111 11 13 77653211
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
. ...++.+.+.|++ +|+++++ -..
T Consensus 268 -----~---~~~~~~~~~~l~~---~G~iv~~-G~~ 291 (371)
T 1f8f_A 268 -----S---PEILKQGVDALGI---LGKIAVV-GAP 291 (371)
T ss_dssp -----C---HHHHHHHHHTEEE---EEEEEEC-CCC
T ss_pred -----C---HHHHHHHHHHHhc---CCEEEEe-CCC
Confidence 1 2457888899999 9999988 543
No 459
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=57.26 E-value=7.6 Score=35.18 Aligned_cols=71 Identities=24% Similarity=0.368 Sum_probs=48.1
Q ss_pred cCCCchhhhhhcCHHHHHHHHHHHHHh---------hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCcccccc
Q 044482 4 HNGLHLFDYASKDARLQNLFNQSMHNH---------TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIE 74 (345)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~f~~~~~l~---------~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~ 74 (345)
.+|.++|+++..+|+....|...|... ..+.++.--.+||.++|.|.....|+++.+-.+.+..|.+..+.
T Consensus 140 ~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~ 219 (374)
T 1qzz_A 140 RYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAE 219 (374)
T ss_dssp HHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHH
T ss_pred hhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHH
Confidence 357889999999999999998876522 12222212457888888888899999987543444444344443
No 460
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=56.89 E-value=39 Score=30.15 Aligned_cols=89 Identities=11% Similarity=0.028 Sum_probs=55.2
Q ss_pred cccccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--Cce-EEe----ccCCcC----C----CCC-CEE
Q 044482 177 FKELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVE-HVE----GDMFVN----V----PSG-QAI 238 (345)
Q Consensus 177 ~~~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~-~~~----gd~~~~----~----p~~-D~i 238 (345)
.....+||-+|+|. |.++..+++.. +.++++.|. ++-.+.++ ... .+. .|+.+. . ..+ |++
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~v 244 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 244 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEE
Confidence 55667888899765 88899999877 567888886 55444443 221 111 122111 1 223 877
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
+-.- ..+ ..++.+.+.|+| +|+++++ -.
T Consensus 245 id~~-----g~~---~~~~~~~~~l~~---~G~iv~~-G~ 272 (352)
T 1e3j_A 245 IDCS-----GNE---KCITIGINITRT---GGTLMLV-GM 272 (352)
T ss_dssp EECS-----CCH---HHHHHHHHHSCT---TCEEEEC-SC
T ss_pred EECC-----CCH---HHHHHHHHHHhc---CCEEEEE-ec
Confidence 6432 112 357788899999 9999988 54
No 461
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=56.50 E-value=13 Score=33.63 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=55.0
Q ss_pred cccceEEec--CCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceE-Ee--ccCCc---CCC-CC-CEEEeccccc
Q 044482 179 ELKKLVDVA--SCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEH-VE--GDMFV---NVP-SG-QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiG--gG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~-~~--gd~~~---~~p-~~-D~i~~~~vlh 245 (345)
...+||=+| ||.|.++..+++.....++++.|. ++-++.++ .... +. .|+.+ ... .+ |+++-..
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~--- 247 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTT--- 247 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECS---
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECC---
Confidence 567888887 677999999999866789999998 55455444 2111 11 11111 111 24 7765321
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.. ...++.+.+.|++ +|+++++
T Consensus 248 --g~---~~~~~~~~~~l~~---~G~iv~~ 269 (363)
T 4dvj_A 248 --HT---DKHAAEIADLIAP---QGRFCLI 269 (363)
T ss_dssp --CH---HHHHHHHHHHSCT---TCEEEEC
T ss_pred --Cc---hhhHHHHHHHhcC---CCEEEEE
Confidence 11 2467888899999 9999988
No 462
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=56.44 E-value=5.7 Score=35.09 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=28.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCC----CeEEEeeh
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQ----ITGINFDL 211 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~----~~~~~~Dl 211 (345)
+...|+=||||.|.....|++.+|+ ++.+++|-
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDP 96 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDG 96 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcC
Confidence 3469999999999999999998886 58888884
No 463
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=55.72 E-value=2.5 Score=29.21 Aligned_cols=41 Identities=5% Similarity=-0.152 Sum_probs=33.9
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE---eeecC
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV---MYNLF 96 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~---~y~~t 96 (345)
..|+.+||+++|+ .-+.+.|+|..|...|.+...++ .|..+
T Consensus 29 ~~Ta~~IAkkLg~-------sK~~vNr~LY~L~kkG~V~~~~~~PP~W~~~ 72 (75)
T 1sfu_A 29 YTTAISLSNRLKI-------NKKKINQQLYKLQKEDTVKMVPSNPPKWFKN 72 (75)
T ss_dssp EECHHHHHHHTTC-------CHHHHHHHHHHHHHTTSEEEECCSSCEEEEC
T ss_pred chHHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEecCCCCCCCccCC
Confidence 4899999999999 46789999999999999977653 55554
No 464
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=55.25 E-value=1.9 Score=33.36 Aligned_cols=44 Identities=5% Similarity=-0.050 Sum_probs=35.2
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID 89 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~ 89 (345)
+...|....+ +.|..+||+++++ .+..+.++++.|...|+++..
T Consensus 31 il~~L~~~~~-~~t~~ela~~l~~-------~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 31 VYAILYLSDK-PLTISDIMEELKI-------SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHCSS-CEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCC-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEE
Confidence 4445521223 6899999999999 678999999999999999875
No 465
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=54.84 E-value=51 Score=29.93 Aligned_cols=96 Identities=9% Similarity=-0.017 Sum_probs=58.9
Q ss_pred cccccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEec---c-CCcCC----C-CC-CEEEecc
Q 044482 177 FKELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEG---D-MFVNV----P-SG-QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~g---d-~~~~~----p-~~-D~i~~~~ 242 (345)
.....+||-+|+|. |.++..+++...--++++.|. ++-++.++ ....+.. | +.+.+ + .+ |+|+-.-
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~ 262 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV 262 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEECC
Confidence 66678898899765 899999999874336888887 55555554 3332221 1 11111 1 24 8776432
Q ss_pred c----------cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 243 V----------LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 243 v----------lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
- .|+-.. ...++.+.+.|++ +|+++++ -..
T Consensus 263 G~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~---~G~iv~~-G~~ 302 (398)
T 1kol_A 263 GFEARGHGHEGAKHEAP---ATVLNSLMQVTRV---AGKIGIP-GLY 302 (398)
T ss_dssp CTTCBCSSTTGGGSBCT---THHHHHHHHHEEE---EEEEEEC-SCC
T ss_pred CCcccccccccccccch---HHHHHHHHHHHhc---CCEEEEe-ccc
Confidence 2 121111 1357888899999 9999888 543
No 466
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=54.72 E-value=70 Score=24.50 Aligned_cols=88 Identities=13% Similarity=0.078 Sum_probs=50.5
Q ss_pred cccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---CceEEeccCCc-C----C--CCCCEEEecccccc
Q 044482 179 ELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP---CVEHVEGDMFV-N----V--PSGQAIFTKSVLLN 246 (345)
Q Consensus 179 ~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---ri~~~~gd~~~-~----~--p~~D~i~~~~vlh~ 246 (345)
...+|+=+|+|. |......+.+. +.+++++|. ++.++.++ ++.++.+|..+ . . ...|+++..-
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~---- 92 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT---- 92 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS----
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe----
Confidence 346788888754 44444444444 358899997 66665543 46667777643 1 1 1238776652
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+++.....+..+.+.+.| ..+++..
T Consensus 93 -~~~~~~~~~~~~~~~~~~---~~~iv~~ 117 (155)
T 2g1u_A 93 -NDDSTNFFISMNARYMFN---VENVIAR 117 (155)
T ss_dssp -SCHHHHHHHHHHHHHTSC---CSEEEEE
T ss_pred -CCcHHHHHHHHHHHHHCC---CCeEEEE
Confidence 233334455556666666 5566555
No 467
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=53.78 E-value=46 Score=27.32 Aligned_cols=83 Identities=5% Similarity=-0.039 Sum_probs=49.8
Q ss_pred eEEecCCccHHHHHHHHHC--CCCeEEEeeh-hhHhhhC-C--CceEEeccCCcC-------CCCCCEEEeccccccCCh
Q 044482 183 LVDVASCLGANMSLIVNTY--PQITGINFDL-PYVIKNA-P--CVEHVEGDMFVN-------VPSGQAIFTKSVLLNWSD 249 (345)
Q Consensus 183 vlDiGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a-~--ri~~~~gd~~~~-------~p~~D~i~~~~vlh~~~d 249 (345)
|+=+|+ |.++..+++.. .+.+++++|. ++.++.. + ++.++.||..++ ..++|++++. .++
T Consensus 3 iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~-----~~~ 75 (218)
T 3l4b_C 3 VIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVIL-----TPR 75 (218)
T ss_dssp EEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEEC-----CSC
T ss_pred EEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEe-----cCC
Confidence 555565 66666665542 2457889997 6555542 2 688899998762 2234877754 234
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++...++....+.+.| ..+++..
T Consensus 76 d~~n~~~~~~a~~~~~---~~~iia~ 98 (218)
T 3l4b_C 76 DEVNLFIAQLVMKDFG---VKRVVSL 98 (218)
T ss_dssp HHHHHHHHHHHHHTSC---CCEEEEC
T ss_pred cHHHHHHHHHHHHHcC---CCeEEEE
Confidence 4444555666666666 5665554
No 468
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=53.65 E-value=58 Score=29.10 Aligned_cols=94 Identities=11% Similarity=-0.062 Sum_probs=56.6
Q ss_pred HhccCcccccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----C-ceEEe-----ccCCcC----C-CC
Q 044482 172 EIYKGFKELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP----C-VEHVE-----GDMFVN----V-PS 234 (345)
Q Consensus 172 ~~~~~~~~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----r-i~~~~-----gd~~~~----~-p~ 234 (345)
+... .....+||=+|+|. |.++..+++...--++++.|. ++-.+.++ . +.+.. .|+.+. . +.
T Consensus 173 ~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~ 251 (363)
T 3m6i_A 173 QRAG-VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGI 251 (363)
T ss_dssp HHHT-CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSC
T ss_pred HHcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCC
Confidence 3344 66678888888765 889999998874334888886 44444333 1 11111 121111 1 23
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 235 G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 235 ~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
+ |+++-.- ..+ ..++.+.+.|++ +|+++++ -.
T Consensus 252 g~Dvvid~~-----g~~---~~~~~~~~~l~~---~G~iv~~-G~ 284 (363)
T 3m6i_A 252 EPAVALECT-----GVE---SSIAAAIWAVKF---GGKVFVI-GV 284 (363)
T ss_dssp CCSEEEECS-----CCH---HHHHHHHHHSCT---TCEEEEC-CC
T ss_pred CCCEEEECC-----CCh---HHHHHHHHHhcC---CCEEEEE-cc
Confidence 4 8876432 222 357888899999 9999998 54
No 469
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=53.51 E-value=1e+02 Score=26.01 Aligned_cols=89 Identities=8% Similarity=-0.036 Sum_probs=52.2
Q ss_pred cceEEecCCccHHHHHHHHHCC--CCeEEEeeh-hhHhhhC--CCceEEeccCCc-CCCCC-CEEEeccccccCChhHHH
Q 044482 181 KKLVDVASCLGANMSLIVNTYP--QITGINFDL-PYVIKNA--PCVEHVEGDMFV-NVPSG-QAIFTKSVLLNWSDEQCL 253 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p--~~~~~~~Dl-p~~i~~a--~ri~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~~~~ 253 (345)
.+||=.| + |..+..++++.- +.++++++. +.-.+.. .+++++.+|+.+ . -.+ |+|+.........+....
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~-~~~~d~vi~~a~~~~~~~~~~~ 82 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS-LDGVTHLLISTAPDSGGDPVLA 82 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC-CTTCCEEEECCCCBTTBCHHHH
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc-cCCCCEEEECCCccccccHHHH
Confidence 4688888 4 888887776542 357888887 3322221 278999999877 4 333 877665444433344445
Q ss_pred HHHHHHHhhCCCCCCCcEEEEE
Q 044482 254 KILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 254 ~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+++.+.+.-.. -.+++.+
T Consensus 83 ~l~~a~~~~~~~---~~~~v~~ 101 (286)
T 3ius_A 83 ALGDQIAARAAQ---FRWVGYL 101 (286)
T ss_dssp HHHHHHHHTGGG---CSEEEEE
T ss_pred HHHHHHHhhcCC---ceEEEEe
Confidence 556555543122 2466655
No 470
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Probab=52.94 E-value=18 Score=31.89 Aligned_cols=104 Identities=12% Similarity=0.041 Sum_probs=62.3
Q ss_pred HHHHHHCCCCeEEEeehhhHhhhCC--------CceEE-eccCCcCCC-C-CCEEEecc----ccccCC--hhHH---HH
Q 044482 195 SLIVNTYPQITGINFDLPYVIKNAP--------CVEHV-EGDMFVNVP-S-GQAIFTKS----VLLNWS--DEQC---LK 254 (345)
Q Consensus 195 ~~l~~~~p~~~~~~~Dlp~~i~~a~--------ri~~~-~gd~~~~~p-~-~D~i~~~~----vlh~~~--d~~~---~~ 254 (345)
..++.+.++-++.++|.+-.+..-+ ...+. .+||..|.- . .|+|++.- .-|++. .+.. ..
T Consensus 156 ~~~~~k~~g~~vl~v~~~~~~p~k~v~wi~Pi~GAt~~~~lDfg~p~~~~k~DvV~SDMApn~sGh~yqQC~DHarii~L 235 (320)
T 2hwk_A 156 SSFVSKLKGRTVLVVGEKLSVPGKMVDWLSDRPEATFRARLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSM 235 (320)
T ss_dssp HHHHHTSSCSEEEEEESCCCCTTSEEEEEESSTTCSEECCGGGCSCTTSCCEEEEEEECCCCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCcEEEEEecccccCCceeEeeccCCCceeecccccCCccccCcCCEEEEcCCCCCCCccccccchHHHHHHH
Confidence 3456677777776665333333222 45566 678877433 2 39998853 234433 2221 23
Q ss_pred HHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEE
Q 044482 255 ILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVI 330 (345)
Q Consensus 255 iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~ 330 (345)
+++.+.+.|+| ||.+++- - . +|..|..+++...|++. |+.+++.
T Consensus 236 al~fA~~vLkP---GGtfV~K-v--------------------------y-ggaDr~se~lv~~LaR~-F~~Vr~v 279 (320)
T 2hwk_A 236 LTKKACLHLNP---GGTCVSI-G--------------------------Y-GYADRASESIIGAIARQ-FKFSRVC 279 (320)
T ss_dssp THHHHGGGEEE---EEEEEEE-E--------------------------C-CCCSHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHhcCC---CceEEEE-E--------------------------e-cCCcccHHHHHHHHHHh-cceeeee
Confidence 57778899999 9998888 1 1 44445566777777665 7766654
No 471
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=52.64 E-value=10 Score=33.39 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=33.7
Q ss_pred CceEEeccCCc---CCCCC--CEEEecccccc---CCh---------------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 CVEHVEGDMFV---NVPSG--QAIFTKSVLLN---WSD---------------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 ri~~~~gd~~~---~~p~~--D~i~~~~vlh~---~~d---------------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+++++.||.++ .++++ |+|++.--... ..+ +....+++++++.|+| ||.+++.
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~---~G~l~i~ 96 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVP---GGRLVIV 96 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCC---CcEEEEE
Confidence 56778888776 23433 88877633221 110 1124688999999999 9988776
No 472
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=52.41 E-value=1.5 Score=36.64 Aligned_cols=58 Identities=14% Similarity=-0.030 Sum_probs=45.7
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. |...|... + +.|..+||+.+++ .+..+.++++.|...|++++... .+.+|+.++.
T Consensus 50 q~~-iL~~L~~~-~-~~t~~eLa~~l~i-------~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~ 114 (207)
T 2fxa_A 50 EHH-ILWIAYQL-N-GASISEIAKFGVM-------HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTE 114 (207)
T ss_dssp HHH-HHHHHHHH-T-SEEHHHHHHHTTC-------CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHH
T ss_pred HHH-HHHHHHHC-C-CcCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHH
Confidence 444 55566333 3 6999999999999 68899999999999999987542 6788888876
No 473
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=51.89 E-value=24 Score=31.37 Aligned_cols=88 Identities=13% Similarity=0.007 Sum_probs=53.7
Q ss_pred cccccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--C----ceEEeccCCcC---CC--CC-CEEEecc
Q 044482 177 FKELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--C----VEHVEGDMFVN---VP--SG-QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--r----i~~~~gd~~~~---~p--~~-D~i~~~~ 242 (345)
.....+||=+|+|. |.++..++++.-..++++.|. ++-++.++ . +.....|+.+. .. .+ |+++...
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~~ 240 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVCA 240 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEECC
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEec
Confidence 55667888888775 567777777777889999997 54444443 1 21112222221 11 23 4444322
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. . ...+....+.|++ +|++++.
T Consensus 241 ~-----~---~~~~~~~~~~l~~---~G~~v~~ 262 (348)
T 4eez_A 241 V-----A---RIAFEQAVASLKP---MGKMVAV 262 (348)
T ss_dssp S-----C---HHHHHHHHHTEEE---EEEEEEC
T ss_pred c-----C---cchhheeheeecC---CceEEEE
Confidence 1 1 2457888899999 9999888
No 474
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=51.65 E-value=3.1 Score=37.80 Aligned_cols=59 Identities=10% Similarity=0.000 Sum_probs=0.0
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCcccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKER 102 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~l 102 (345)
... |...|... .++|..+||+++++ .+..+.|.|+.|...|+++.......+|+.++.+
T Consensus 22 ~~~-iL~~l~~~--~~~t~~eLa~~l~v-------s~~Tv~r~l~~Le~~Glv~~~~~gi~LT~~G~~~ 80 (345)
T 2o0m_A 22 RFQ-ILRNIYWM--QPIGRRSLSETMGI-------TERVLRTETDVLKQLNLIEPSKSGMTLTERGLEV 80 (345)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHH-HHHHHHHc--CCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEEecceEEcHHHHHH
Confidence 344 66677333 26999999999999 6789999999999999998655567788888763
No 475
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=51.49 E-value=78 Score=26.15 Aligned_cols=85 Identities=9% Similarity=-0.053 Sum_probs=52.3
Q ss_pred ccceEEecCCccHHHHHHHHHCCC--CeEEEeeh-hhHhhhC-CCceEEeccCCcC-------CCCCCEEEeccccccCC
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQ--ITGINFDL-PYVIKNA-PCVEHVEGDMFVN-------VPSGQAIFTKSVLLNWS 248 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~--~~~~~~Dl-p~~i~~a-~ri~~~~gd~~~~-------~p~~D~i~~~~vlh~~~ 248 (345)
..+++=+|+ |..+..+++..-. . ++++|. ++.++.+ .++.++.||..++ +..+|++++. .+
T Consensus 9 ~~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~-----~~ 80 (234)
T 2aef_A 9 SRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVD-----LE 80 (234)
T ss_dssp -CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHTTCTTCSEEEEC-----CS
T ss_pred CCEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhcCcchhcEEEEc-----CC
Confidence 356887777 6777777776533 4 788887 5544433 3688899998752 1234877764 23
Q ss_pred hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 249 DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 249 d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+++.........+.+.| +.+++..
T Consensus 81 ~d~~n~~~~~~a~~~~~---~~~iia~ 104 (234)
T 2aef_A 81 SDSETIHCILGIRKIDE---SVRIIAE 104 (234)
T ss_dssp CHHHHHHHHHHHHHHCS---SSEEEEE
T ss_pred CcHHHHHHHHHHHHHCC---CCeEEEE
Confidence 44433444555666788 6666655
No 476
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=51.47 E-value=1.2 Score=32.54 Aligned_cols=55 Identities=4% Similarity=-0.076 Sum_probs=43.2
Q ss_pred ccceeeccCCCchhHHHHHH-HcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVN-TYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~-~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~ 101 (345)
|.-.| ...+ +.|+.+||+ ..++ +...+.|-++.|...|+++.+++...+|+.++.
T Consensus 21 iL~~L-~~~~-~~t~~~Lae~~l~~-------drstvsrnl~~L~r~GlVe~~~~Dl~LT~~G~~ 76 (95)
T 1bja_A 21 ILITI-AKKD-FITAAEVREVHPDL-------GNAVVNSNIGVLIKKGLVEKSGDGLIITGEAQD 76 (95)
T ss_dssp HHHHH-HHST-TBCHHHHHHTCTTS-------CHHHHHHHHHHHHTTTSEEEETTEEEECHHHHH
T ss_pred HHHHH-HHCC-CCCHHHHHHHHhcc-------cHHHHHHHHHHHHHCCCeecCCCCeeeCHhHHH
Confidence 44455 3333 689999999 9999 778899999999999999844445888888876
No 477
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=51.42 E-value=91 Score=25.22 Aligned_cols=132 Identities=9% Similarity=-0.009 Sum_probs=65.8
Q ss_pred ceEEecCCccHHHHHHHHH---CCCCeEEEeeh-hh-Hhhh----CCCceEEeccCCcC--CC---CC-CEEEecccccc
Q 044482 182 KLVDVASCLGANMSLIVNT---YPQITGINFDL-PY-VIKN----APCVEHVEGDMFVN--VP---SG-QAIFTKSVLLN 246 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~---~p~~~~~~~Dl-p~-~i~~----a~ri~~~~gd~~~~--~p---~~-D~i~~~~vlh~ 246 (345)
+||=.| |+|..+.+++++ ..+.++++++. ++ .++. ..++.++.+|+.++ +. ++ |+++..--..+
T Consensus 7 ~vlVtG-asg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n 85 (221)
T 3r6d_A 7 YITILG-AAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESG 85 (221)
T ss_dssp EEEEES-TTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCH
T ss_pred EEEEEe-CCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCC
Confidence 355555 455555555443 24568888887 44 4332 22899999999862 21 34 88776543322
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCC-CccCCHHHHHHHHHHCCCC
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQ-AKGRTAGEFKALAMAAGFG 325 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~rt~~e~~~ll~~aGf~ 325 (345)
+ +...+++.+.+. . .++|+.+ -........+.... ...+ ... + ....+....++++++.|+.
T Consensus 86 ~---~~~~~~~~~~~~--~---~~~iv~i-Ss~~~~~~~~~~~~---~~~~----~~~-~~~y~~~K~~~e~~~~~~~i~ 148 (221)
T 3r6d_A 86 S---DMASIVKALSRX--N---IRRVIGV-SMAGLSGEFPVALE---KWTF----DNL-PISYVQGERQARNVLRESNLN 148 (221)
T ss_dssp H---HHHHHHHHHHHT--T---CCEEEEE-EETTTTSCSCHHHH---HHHH----HTS-CHHHHHHHHHHHHHHHHSCSE
T ss_pred h---hHHHHHHHHHhc--C---CCeEEEE-eeceecCCCCcccc---cccc----ccc-ccHHHHHHHHHHHHHHhCCCC
Confidence 1 134444444332 1 3577766 33322221111000 0000 000 1 1223456677888888887
Q ss_pred ceEEEe
Q 044482 326 TIKVIC 331 (345)
Q Consensus 326 ~~~~~~ 331 (345)
..-+.+
T Consensus 149 ~~~vrp 154 (221)
T 3r6d_A 149 YTILRL 154 (221)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 655554
No 478
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=51.30 E-value=0.93 Score=35.16 Aligned_cols=58 Identities=5% Similarity=-0.107 Sum_probs=43.5
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
++. +...|... + +.|..+||+.+++ .+..+.++++.|...|+++.... .+.+|+.+..
T Consensus 42 ~~~-iL~~l~~~-~-~~~~~~la~~l~~-------~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~ 106 (147)
T 1z91_A 42 QYL-ALLLLWEH-E-TLTVKKMGEQLYL-------DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGAL 106 (147)
T ss_dssp HHH-HHHHHHHH-S-EEEHHHHHHTTTC-------CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHS
T ss_pred HHH-HHHHHHHC-C-CCCHHHHHHHHCC-------CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHH
Confidence 444 55566332 3 6899999999999 68889999999999999987532 4666666654
No 479
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=51.28 E-value=1.7 Score=34.20 Aligned_cols=56 Identities=11% Similarity=-0.078 Sum_probs=39.4
Q ss_pred hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 31 TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 31 ~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
+.-+.. |.+.| ...+.+.|+++|.+.+.. ++... ...-+.|.|+.|+..|++.+..
T Consensus 21 T~qR~~-Il~~L-~~~~~~~sa~ei~~~l~~-~~~~i-s~aTVYR~L~~L~e~Glv~~~~ 76 (145)
T 2fe3_A 21 TPQRHA-ILEYL-VNSMAHPTADDIYKALEG-KFPNM-SVATVYNNLRVFRESGLVKELT 76 (145)
T ss_dssp CHHHHH-HHHHH-HHCSSCCCHHHHHHHHGG-GCTTC-CHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHHHH-HHHHH-HhCCCCCCHHHHHHHHHH-hCCCC-ChhhHHHHHHHHHHCCCEEEEe
Confidence 444555 77788 333447899999999932 10000 4678999999999999998754
No 480
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=51.10 E-value=1.3 Score=34.84 Aligned_cols=47 Identities=11% Similarity=0.000 Sum_probs=37.6
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
+.. |...|..+ + +.|..+||+++|+ .+..+.+.++.|...|++.+..
T Consensus 9 ~~~-iL~~L~~~-~-~~s~~ela~~lg~-------s~~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 9 DRI-LVRELAAD-G-RATLSELATRAGL-------SVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp HHH-HHHHHHHC-T-TCCHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHH-HHHHHHHc-C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEEE
Confidence 445 66677333 3 5899999999999 6788999999999999997654
No 481
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=50.73 E-value=1.5 Score=34.31 Aligned_cols=47 Identities=11% Similarity=0.029 Sum_probs=37.3
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
+.. |.+.|..+ + +.|..|||+++|+ .+..+.+.++.|...|++....
T Consensus 7 d~~-il~~L~~~-~-~~s~~ela~~lg~-------s~~tv~~~l~~L~~~G~i~~~~ 53 (144)
T 2cfx_A 7 DLN-IIEELKKD-S-RLSMRELGRKIKL-------SPPSVTERVRQLESFGIIKQYT 53 (144)
T ss_dssp HHH-HHHHHHHC-S-CCCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHH-HHHHHHHc-C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeEEEe
Confidence 344 66667333 3 5899999999999 5788999999999999998654
No 482
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=50.40 E-value=31 Score=30.63 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=55.2
Q ss_pred cccccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceE-Ee---ccCCcCC---CCC-CEEEecccc
Q 044482 177 FKELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEH-VE---GDMFVNV---PSG-QAIFTKSVL 244 (345)
Q Consensus 177 ~~~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~-~~---gd~~~~~---p~~-D~i~~~~vl 244 (345)
.....+||-+|+|. |..+..+++.. +.++++.|. ++-.+.++ .... +. .|+.+.+ ..+ |+++-...
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g- 241 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAV- 241 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCC-
Confidence 56677888899764 99999999987 569999987 55555444 2211 11 1111100 013 66654321
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. ...++.+.+.|+| +|+++++
T Consensus 242 ----~---~~~~~~~~~~l~~---~G~iv~~ 262 (340)
T 3s2e_A 242 ----S---PKAFSQAIGMVRR---GGTIALN 262 (340)
T ss_dssp ----C---HHHHHHHHHHEEE---EEEEEEC
T ss_pred ----C---HHHHHHHHHHhcc---CCEEEEe
Confidence 1 2457888899999 9999988
No 483
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=50.23 E-value=39 Score=30.57 Aligned_cols=90 Identities=12% Similarity=0.119 Sum_probs=56.5
Q ss_pred cccccceEEecCC-ccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceE-Eec-----cCCc---CC-CCC-CEEEec
Q 044482 177 FKELKKLVDVASC-LGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEH-VEG-----DMFV---NV-PSG-QAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG-~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~-~~g-----d~~~---~~-p~~-D~i~~~ 241 (345)
.....+||=+|+| .|.++..+++...--+++++|. ++-++.++ .... +.. |+.+ .. +.+ |+++-.
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~ 270 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFEC 270 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEEC
Confidence 6667888888876 4889999998774337999995 55555554 2211 111 1111 11 123 777643
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCC-cEEEEEecc
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKH-GRTQLRSKR 278 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~g-G~lli~~d~ 278 (345)
- .. ...++.+.+.|++ | |+++++ -.
T Consensus 271 ~-----g~---~~~~~~~~~~l~~---g~G~iv~~-G~ 296 (378)
T 3uko_A 271 I-----GN---VSVMRAALECCHK---GWGTSVIV-GV 296 (378)
T ss_dssp S-----CC---HHHHHHHHHTBCT---TTCEEEEC-SC
T ss_pred C-----CC---HHHHHHHHHHhhc---cCCEEEEE-cc
Confidence 1 12 2457888899999 8 999998 54
No 484
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=50.16 E-value=1.9 Score=36.05 Aligned_cols=63 Identities=8% Similarity=-0.081 Sum_probs=49.0
Q ss_pred HHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe------E---eeecCCC
Q 044482 28 HNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV------V---MYNLFPG 98 (345)
Q Consensus 28 ~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~------~---~y~~t~~ 98 (345)
++.....+. |..+| ..+ +.+..+||+++++ .+..+.+.|+.|...|+++... + .|++|+.
T Consensus 11 aL~~~~rl~-IL~~L-~~~--~~s~~eLa~~l~i-------s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~ 79 (202)
T 2p4w_A 11 VLGNETRRR-ILFLL-TKR--PYFVSELSRELGV-------GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKG 79 (202)
T ss_dssp HHHSHHHHH-HHHHH-HHS--CEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTT
T ss_pred HhCCHHHHH-HHHHH-HhC--CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChH
Confidence 444555677 77778 543 6899999999999 6788999999999999997642 1 6888876
Q ss_pred ccc
Q 044482 99 AKE 101 (345)
Q Consensus 99 s~~ 101 (345)
...
T Consensus 80 ~~~ 82 (202)
T 2p4w_A 80 LRL 82 (202)
T ss_dssp EEE
T ss_pred HHH
Confidence 654
No 485
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=49.92 E-value=7.4 Score=35.46 Aligned_cols=87 Identities=15% Similarity=0.043 Sum_probs=54.3
Q ss_pred cccccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--Cce-EEe---ccCCcCCCCC-CEEEeccccccC
Q 044482 177 FKELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVE-HVE---GDMFVNVPSG-QAIFTKSVLLNW 247 (345)
Q Consensus 177 ~~~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~-~~~---gd~~~~~p~~-D~i~~~~vlh~~ 247 (345)
.....+||-+|+|. |.++..+++.. +.++++.|. ++-++.++ ... ++. .|+.+....+ |+++-.---
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~--- 267 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA--- 267 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS---
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCC---
Confidence 66678899999875 88999999887 567888886 55444443 221 111 1211222234 777643211
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+ ..++.+.+.|+| +|+++++
T Consensus 268 --~---~~~~~~~~~l~~---~G~iv~~ 287 (369)
T 1uuf_A 268 --P---HNLDDFTTLLKR---DGTMTLV 287 (369)
T ss_dssp --C---CCHHHHHTTEEE---EEEEEEC
T ss_pred --H---HHHHHHHHHhcc---CCEEEEe
Confidence 1 236677889999 9999888
No 486
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=49.77 E-value=16 Score=32.66 Aligned_cols=53 Identities=11% Similarity=0.195 Sum_probs=38.5
Q ss_pred HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-h---hHhhhCC-Cce
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-P---YVIKNAP-CVE 222 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p---~~i~~a~-ri~ 222 (345)
....+++.+. .....|||-=||+|+++.+..+. +.+++++|+ | ..++.++ |++
T Consensus 231 l~~~~i~~~~--~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~ 288 (319)
T 1eg2_A 231 VIERLVRALS--HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQ 288 (319)
T ss_dssp HHHHHHHHHS--CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhC--CCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHH
Confidence 3445555443 34578999999999999998887 468999999 5 6676665 543
No 487
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=49.63 E-value=18 Score=32.41 Aligned_cols=86 Identities=15% Similarity=0.005 Sum_probs=55.3
Q ss_pred cccccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCcCCCCC-CEEEeccccccCChhH
Q 044482 177 FKELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFVNVPSG-QAIFTKSVLLNWSDEQ 251 (345)
Q Consensus 177 ~~~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~ 251 (345)
.....+||-+|+|. |.++..+++.. +.++++.|. ++-.+.++ ....+..|. +.+.++ |+++-.- ..+
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~-~~~~~~~D~vid~~-----g~~- 245 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMGVKHFYTDP-KQCKEELDFIISTI-----PTH- 245 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTTCSEEESSG-GGCCSCEEEEEECC-----CSC-
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCCCeecCCH-HHHhcCCCEEEECC-----CcH-
Confidence 66678888899765 88999999887 568999886 44444443 222222221 122235 7776321 111
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 252 CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 252 ~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..++.+.+.|+| +|+++++
T Consensus 246 --~~~~~~~~~l~~---~G~iv~~ 264 (348)
T 3two_A 246 --YDLKDYLKLLTY---NGDLALV 264 (348)
T ss_dssp --CCHHHHHTTEEE---EEEEEEC
T ss_pred --HHHHHHHHHHhc---CCEEEEE
Confidence 247778889999 9999998
No 488
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=49.47 E-value=2.2 Score=36.29 Aligned_cols=46 Identities=7% Similarity=-0.073 Sum_probs=40.3
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE----eEeeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID----VVMYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~----~~~y~~t~~s~~ 101 (345)
+.|..++|+++++ .+..+.+.++.|...|+|.+. ...+.+|+.++.
T Consensus 27 ~~s~s~aA~~L~i-------sq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~ 76 (230)
T 3cta_A 27 YLTSSKLADMLGI-------SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLD 76 (230)
T ss_dssp ECCHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHH
T ss_pred CcCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHH
Confidence 5799999999999 678899999999999999988 567888888876
No 489
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=49.10 E-value=95 Score=24.39 Aligned_cols=88 Identities=6% Similarity=-0.009 Sum_probs=48.2
Q ss_pred ccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCc-----CC-C--CCCEEEeccccccC
Q 044482 180 LKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFV-----NV-P--SGQAIFTKSVLLNW 247 (345)
Q Consensus 180 ~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~-----~~-p--~~D~i~~~~vlh~~ 247 (345)
..+|+=+|+|. |......+.+..+.+++++|. ++.++.++ .+.++.+|..+ .. . ..|++++..-
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~---- 114 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP---- 114 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS----
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC----
Confidence 35788888753 333333332221357888887 55555443 67777888754 12 2 2387776311
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+++....++ ...+.+.| +.+++..
T Consensus 115 ~~~~~~~~~-~~~~~~~~---~~~ii~~ 138 (183)
T 3c85_A 115 HHQGNQTAL-EQLQRRNY---KGQIAAI 138 (183)
T ss_dssp SHHHHHHHH-HHHHHTTC---CSEEEEE
T ss_pred ChHHHHHHH-HHHHHHCC---CCEEEEE
Confidence 233333333 45566777 7776665
No 490
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=48.50 E-value=3.7 Score=39.34 Aligned_cols=67 Identities=9% Similarity=0.082 Sum_probs=0.0
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCc-eeeEEe---EeeecCCCccc-cccchh
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRN-ISTIDV---VMYNLFPGAKE-RTMEEF 107 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~g-l~~~~~---~~y~~t~~s~~-l~~~~~ 107 (345)
++.. |...|+.. +..++.++||+.+++ +...+-+.+..|.+.| +++... ..|.+|+.++. +...+|
T Consensus 6 ~~~~-iL~~l~~~-~~~~~~~~~a~~~~~-------~~~~v~~~~~~L~~~~~~v~~~~~~~~~~~Lt~eg~~~~~~G~p 76 (508)
T 3l4g_A 6 VAEL-LLRRLEAS-DGGLDSAELAAELGM-------EHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEEIAREGSH 76 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHH-HHHHHHhc-CCCcCHHHHHHHcCC-------CHHHHHHHHHHHHhCCCeEEEEEEEEEEEEECHHHHHHHHcCCH
Confidence 4555 77777433 214688999999999 7888999999999998 886543 39999999988 666555
Q ss_pred h
Q 044482 108 N 108 (345)
Q Consensus 108 ~ 108 (345)
.
T Consensus 77 E 77 (508)
T 3l4g_A 77 E 77 (508)
T ss_dssp -
T ss_pred H
Confidence 3
No 491
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=48.27 E-value=79 Score=26.93 Aligned_cols=85 Identities=12% Similarity=0.003 Sum_probs=47.3
Q ss_pred ceEEecCCc-cH-HHHHHHHHCCCCeEEEeeh-hhHhhhCC--Cce-EEeccCCcCCC-CCCEEEeccccccCChhHHHH
Q 044482 182 KLVDVASCL-GA-NMSLIVNTYPQITGINFDL-PYVIKNAP--CVE-HVEGDMFVNVP-SGQAIFTKSVLLNWSDEQCLK 254 (345)
Q Consensus 182 ~vlDiGgG~-G~-~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~-~~~gd~~~~~p-~~D~i~~~~vlh~~~d~~~~~ 254 (345)
+|.=||+|. |. ++..+++.....+++++|. ++.++.++ .+. ....|..+... ..|+|++. .+......
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~ 77 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFRE 77 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEc-----CCHHHHHH
Confidence 466678764 33 3333433322237888997 55554433 221 11223222233 45888775 45556677
Q ss_pred HHHHHHhhCCCCCCCcEEEE
Q 044482 255 ILKNCYDALPKSRKHGRTQL 274 (345)
Q Consensus 255 iL~~~~~aL~p~~~gG~lli 274 (345)
+++++...+++ +..|+.
T Consensus 78 v~~~l~~~l~~---~~iv~~ 94 (281)
T 2g5c_A 78 IAKKLSYILSE---DATVTD 94 (281)
T ss_dssp HHHHHHHHSCT---TCEEEE
T ss_pred HHHHHHhhCCC---CcEEEE
Confidence 88889888998 764443
No 492
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=48.26 E-value=14 Score=33.57 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=26.9
Q ss_pred ccceEEecCCccHHHHH--HHHHCCCCeEEEeeh
Q 044482 180 LKKLVDVASCLGANMSL--IVNTYPQITGINFDL 211 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~--l~~~~p~~~~~~~Dl 211 (345)
.++|+=||+|.+.++.+ |++..++++++++|-
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~ 35 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEP 35 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeC
Confidence 46899999999987655 777888999999995
No 493
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=47.70 E-value=96 Score=28.21 Aligned_cols=86 Identities=14% Similarity=0.107 Sum_probs=46.7
Q ss_pred cccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhh-CC--CceEEeccCCcCCCCCCEEE-eccccccCChhHH
Q 044482 179 ELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKN-AP--CVEHVEGDMFVNVPSGQAIF-TKSVLLNWSDEQC 252 (345)
Q Consensus 179 ~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~-a~--ri~~~~gd~~~~~p~~D~i~-~~~vlh~~~d~~~ 252 (345)
..++|+--|+|+ |......+...++.-..++|. |.-.-. .. ++.++.-+.+... .-|.|+ +.+.. .
T Consensus 318 ~gk~v~~yGa~~~g~~l~~~~~~~~~~i~~~~D~~~~k~g~~~~g~~ipi~~p~~~~~~-~~d~vl~~~~~~-------~ 389 (416)
T 4e2x_A 318 EGRSVVGYGATAKSATVTNFCGIGPDLVHSVYDTTPDKQNRLTPGAHIPVRPASAFSDP-YPDYALLFAWNH-------A 389 (416)
T ss_dssp TTCCEEEECCCSHHHHHHHHHTCCTTTSCCEEESCGGGTTEECTTTCCEEEEGGGCCSS-CCSEEEESCGGG-------H
T ss_pred cCCeEEEEccccHHHHHHHhcCCCcceeeEEEeCCccccCccCCCCCCcCCCHHHHhhc-CCCEEEEecchh-------H
Confidence 456888888765 444444444444433345565 332111 11 4666665544421 126544 44333 2
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 253 LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 253 ~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+|+++......- ||++++-
T Consensus 390 ~ei~~~~~~~~~~---g~~~~~~ 409 (416)
T 4e2x_A 390 EEIMAKEQEFHQA---GGRWILY 409 (416)
T ss_dssp HHHHHHCHHHHHT---TCEEEEC
T ss_pred HHHHHHHHHHHhc---CCEEEEE
Confidence 4677777777777 9998776
No 494
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=47.23 E-value=1.9 Score=34.44 Aligned_cols=49 Identities=6% Similarity=0.005 Sum_probs=38.4
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV 91 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~ 91 (345)
.+.. |...| ...+ +.|..|||+++|+ .+..+.+.++.|...|++.....
T Consensus 11 ~~~~-il~~L-~~~~-~~s~~ela~~lg~-------s~~tv~~~l~~L~~~G~i~~~~~ 59 (162)
T 2p5v_A 11 TDIK-ILQVL-QENG-RLTNVELSERVAL-------SPSPCLRRLKQLEDAGIVRQYAA 59 (162)
T ss_dssp HHHH-HHHHH-HHCT-TCCHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHH-HHHHH-HHcC-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEeeecc
Confidence 3445 66777 3333 5899999999999 57889999999999999986543
No 495
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=47.09 E-value=1.7 Score=34.23 Aligned_cols=49 Identities=6% Similarity=0.061 Sum_probs=38.6
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV 91 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~ 91 (345)
.+.. |...|..+ + ..|..+||+++|+ .+..+.+.++.|...|++.....
T Consensus 10 ~d~~-il~~L~~~-~-~~s~~ela~~lg~-------s~~tv~~~l~~L~~~G~i~~~~~ 58 (151)
T 2dbb_A 10 VDMQ-LVKILSEN-S-RLTYRELADILNT-------TRQRIARRIDKLKKLGIIRKFTI 58 (151)
T ss_dssp HHHH-HHHHHHHC-T-TCCHHHHHHHTTS-------CHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHH-HHHHHHHc-C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEEEe
Confidence 4455 77777333 3 5899999999999 57888999999999999986543
No 496
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=47.05 E-value=1.2 Score=34.98 Aligned_cols=45 Identities=2% Similarity=-0.037 Sum_probs=36.5
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeE
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTI 88 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~ 88 (345)
++. |...| ...+ +.|..+||+++|+ .+..+.+.++.|...|++..
T Consensus 5 ~~~-il~~L-~~~~-~~~~~ela~~lg~-------s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 5 DLR-ILKIL-QYNA-KYSLDEIAREIRI-------PKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHH-HHHHH-TTCT-TSCHHHHHHHHTS-------CHHHHHHHHHHHHHTTSSCC
T ss_pred HHH-HHHHH-HHcC-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCcEEE
Confidence 445 66677 3333 5899999999999 67889999999999999975
No 497
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=46.94 E-value=73 Score=28.90 Aligned_cols=86 Identities=13% Similarity=0.036 Sum_probs=54.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh--hh-Hhh-hCC-------CceEEeccCCcCCCCC-CEEEecccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL--PY-VIK-NAP-------CVEHVEGDMFVNVPSG-QAIFTKSVLLN 246 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl--p~-~i~-~a~-------ri~~~~gd~~~~~p~~-D~i~~~~vlh~ 246 (345)
...+||.|+-+.|.++..++...| . .+-|. .+ .++ +.+ ++++ .+-.++.+.. |++++..-
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~~~--~-~~~ds~~~~~~~~~n~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~lp--- 109 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEHKP--Y-SIGDSYISELATRENLRLNGIDESSVKF--LDSTADYPQQPGVVLIKVP--- 109 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGGCC--E-EEESCHHHHHHHHHHHHHTTCCGGGSEE--EETTSCCCSSCSEEEEECC---
T ss_pred CCCCEEEECCCCCHHHHhhccCCc--e-EEEhHHHHHHHHHHHHHHcCCCccceEe--cccccccccCCCEEEEEcC---
Confidence 346899999999999999986543 2 22453 11 111 111 2333 2333445544 88777532
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
-+..+....|+++...|+| |++|++.
T Consensus 110 k~~~~l~~~L~~l~~~l~~---~~~i~~~ 135 (375)
T 4dcm_A 110 KTLALLEQQLRALRKVVTS---DTRIIAG 135 (375)
T ss_dssp SCHHHHHHHHHHHHTTCCT---TSEEEEE
T ss_pred CCHHHHHHHHHHHHhhCCC---CCEEEEE
Confidence 1344667889999999999 9999887
No 498
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=46.62 E-value=10 Score=34.51 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=56.6
Q ss_pred cccccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceE-E---eccCCc---C---C-CCC-CEEEe
Q 044482 177 FKELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEH-V---EGDMFV---N---V-PSG-QAIFT 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~-~---~gd~~~---~---~-p~~-D~i~~ 240 (345)
.....+||-+|+|. |.++..+++...--++++.|. ++-.+.++ .... + ..|+.+ . . +.+ |+++-
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid 259 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIE 259 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEE
Confidence 56667888888765 889999999874338888887 54455444 2211 1 112211 1 1 124 77764
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
.- ... ..++.+.+.|++ ||+++++ -..
T Consensus 260 ~~-----G~~---~~~~~~~~~l~~---~G~vv~~-G~~ 286 (370)
T 4ej6_A 260 CA-----GVA---ETVKQSTRLAKA---GGTVVIL-GVL 286 (370)
T ss_dssp CS-----CCH---HHHHHHHHHEEE---EEEEEEC-SCC
T ss_pred CC-----CCH---HHHHHHHHHhcc---CCEEEEE-ecc
Confidence 31 212 457888899999 9999998 543
No 499
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=46.51 E-value=2.4 Score=34.34 Aligned_cols=48 Identities=8% Similarity=0.049 Sum_probs=38.0
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
.+.. |...|..+ + ..|..+||+++|+ .+..+.+.++.|...|++....
T Consensus 18 ~d~~-IL~~L~~~-~-~~s~~eLA~~lgl-------S~~tv~~~l~~L~~~G~I~~~~ 65 (171)
T 2ia0_A 18 LDRN-ILRLLKKD-A-RLTISELSEQLKK-------PESTIHFRIKKLQERGVIERYT 65 (171)
T ss_dssp HHHH-HHHHHHHC-T-TCCHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHH-HHHHHHHc-C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEeec
Confidence 3445 66677333 3 5899999999999 5788999999999999997654
No 500
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=46.43 E-value=2.4 Score=31.77 Aligned_cols=59 Identities=8% Similarity=0.071 Sum_probs=39.5
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----e-eecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----M-YNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~-y~~t~~s~~ 101 (345)
|...|... + +.|..+||+.++.-.++ .+..+.++++.|...|++++... . +.+|+.++.
T Consensus 15 vL~~l~~~-~-~~t~~ela~~l~~~~~~---s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~ 78 (123)
T 1okr_A 15 VMNIIWMK-K-YASANNIIEEIQMQKDW---SPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDI 78 (123)
T ss_dssp HHHHHHHH-S-SEEHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHH
T ss_pred HHHHHHhC-C-CcCHHHHHHHHhccCCC---cHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHH
Confidence 55555222 3 68999999999830000 37789999999999999987653 1 345555443
Done!