BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044483
         (235 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
 pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
 pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
 pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
          Length = 237

 Score = 28.1 bits (61), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 124 RLTLLFAASNGITEILKEIIHQHPQAILLDNLNEKEQNILHVSVKRRQYKVFELIMKDMR 183
           R  L+ AA N   E +K +I       L+D  + +    LH++ K+  Y+V + ++ + +
Sbjct: 45  RTPLMEAAENNHLEAVKYLI---KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101

Query: 184 LSVPKWASRIDKKGYTLLHHVADMKH 209
           + V    +  D  G+T +    + KH
Sbjct: 102 MDV----NCQDDGGWTPMIWATEYKH 123


>pdb|4AIP|A Chain A, The Frpb Iron Transporter From Neisseria Meningitidis
           (f3-3 Variant)
 pdb|4AIP|B Chain B, The Frpb Iron Transporter From Neisseria Meningitidis
           (f3-3 Variant)
 pdb|4AIP|C Chain C, The Frpb Iron Transporter From Neisseria Meningitidis
           (f3-3 Variant)
          Length = 742

 Score = 27.7 bits (60), Expect = 5.8,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 118 DKNWAFRLTLLFAASNGIT 136
           DKNW  RL   FA++NG++
Sbjct: 182 DKNWGVRLNSGFASNNGVS 200


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,754,103
Number of Sequences: 62578
Number of extensions: 244903
Number of successful extensions: 568
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 7
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)