BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044483
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana
GN=At3g12360 PE=2 SV=1
Length = 590
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 127 LLFAASNGITEILKEIIHQHPQAILLDNLNEKEQNILHVSVKRRQYKVFE-LIMKDMRLS 185
L+ AA G TE++ +++ + + + N K N LH++ ++ +V + L+ KD
Sbjct: 202 LVSAAMRGHTEVVNQLLSKAGNLLEISRSNNK--NALHLAARQGHVEVIKALLSKD---- 255
Query: 186 VPKWASRIDKKGYTLLH 202
P+ A RIDKKG T LH
Sbjct: 256 -PQLARRIDKKGQTALH 271
>sp|Q6GNY1|MIB1_XENLA E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2
SV=1
Length = 1011
Score = 35.4 bits (80), Expect = 0.37, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Query: 116 KKDKNWAFRLTLLFAASNGITEILKEIIHQHPQAILLDNLNEKEQNILHVSVKRRQYKVF 175
KKD + L AA N E+ + ++HQ + + N+N +Q LH++V+R+ ++
Sbjct: 628 KKDDGYT---ALHLAALNNHVEVAELLVHQGSANLDIQNVN--QQTALHLAVERQHTQIV 682
Query: 176 ELIMK-DMRLSVPKWASRIDKKGYTLLHHVADMKHY 210
L+++ + +L + DK G T LH ++H+
Sbjct: 683 RLLVRAEAKLDIQ------DKDGDTPLHEA--LRHH 710
>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1
Length = 1030
Score = 35.0 bits (79), Expect = 0.45, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Query: 116 KKDKNWAFRLTLLFAASNGITEILKEIIHQHPQAILLDNLNEKEQNILHVSVKRRQYKVF 175
KKD + L AA N E+ + ++HQ + + N+N +Q LH++V+R+ ++
Sbjct: 628 KKDDGYT---ALHLAALNNHVEVAELLVHQGNANLDVQNVN--QQTALHLAVERQHTQIV 682
Query: 176 ELIMK-DMRLSVPKWASRIDKKGYTLLHHVADMKHY 210
L+++ + +L V DK G T LH ++H+
Sbjct: 683 RLLVRAEAKLDVQ------DKDGDTPLHEA--LRHH 710
>sp|Q80SY4|MIB1_MOUSE E3 ubiquitin-protein ligase MIB1 OS=Mus musculus GN=Mib1 PE=1 SV=1
Length = 1006
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 14/96 (14%)
Query: 116 KKDKNWAFRLTLLFAASNGITEILKEIIHQHPQAILLDNLNEKEQNILHVSVKRRQYKVF 175
KKD + L AA N E+ + ++HQ + + N+N +Q LH++V+R+ ++
Sbjct: 628 KKDDGYT---ALHLAALNNHVEVAELLVHQGNANLDIQNVN--QQTALHLAVERQHTQIV 682
Query: 176 ELIMK-DMRLSVPKWASRIDKKGYTLLHHVADMKHY 210
L+++ +L + DK G T LH ++H+
Sbjct: 683 RLLVRAGAKLDIQ------DKDGDTPLHEA--LRHH 710
>sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1
Length = 1006
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 14/96 (14%)
Query: 116 KKDKNWAFRLTLLFAASNGITEILKEIIHQHPQAILLDNLNEKEQNILHVSVKRRQYKVF 175
KKD + L AA N E+ + ++HQ + + N+N +Q LH++V+R+ ++
Sbjct: 628 KKDDGYT---ALHLAALNNHVEVAELLVHQGNANLDIQNVN--QQTALHLAVERQHTQIV 682
Query: 176 ELIMK-DMRLSVPKWASRIDKKGYTLLHHVADMKHY 210
L+++ +L + DK G T LH ++H+
Sbjct: 683 RLLVRAGAKLDIQ------DKDGDTPLHEA--LRHH 710
>sp|Q6RI86|TRPA1_RAT Transient receptor potential cation channel subfamily A member 1
OS=Rattus norvegicus GN=Trpa1 PE=2 SV=1
Length = 1125
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 109 NKAVHNYKKDKNWAFRLTLLFAASNGITEILKEIIHQHPQAILLDNLNEKEQNILHVSVK 168
N +VH+ KDK + L FAAS G + ++ LL+ + LH++ K
Sbjct: 437 NVSVHSKSKDK----KSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAK 492
Query: 169 RRQYKVFELIMKDMRLSVPKWASRIDKKGYTLLHHVADMKHYKE 212
KV +L++K L + D G+T LHH A M Y +
Sbjct: 493 NGHDKVVQLLLKKGALFLS------DHNGWTALHH-ASMGGYTQ 529
>sp|O75762|TRPA1_HUMAN Transient receptor potential cation channel subfamily A member 1
OS=Homo sapiens GN=TRPA1 PE=2 SV=3
Length = 1119
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 109 NKAVHNYKKDKNWAFRLTLLFAASNGITEILKEIIHQHPQAILLDNLNEKEQNILHVSVK 168
N ++H+ KDK + L FAAS G + ++ LL+ + LH++ K
Sbjct: 436 NVSIHSKSKDK----KSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAK 491
Query: 169 RRQYKVFELIMKDMRLSVPKWASRIDKKGYTLLHHVADMKHYKE 212
KV +L++K L + D G+T LHH A M Y +
Sbjct: 492 NGHDKVVQLLLKKGALFLS------DHNGWTALHH-ASMGGYTQ 528
>sp|Q8BLA8|TRPA1_MOUSE Transient receptor potential cation channel subfamily A member 1
OS=Mus musculus GN=Trpa1 PE=1 SV=1
Length = 1125
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 109 NKAVHNYKKDKNWAFRLTLLFAASNGITEILKEIIHQHPQAILLDNLNEKEQNILHVSVK 168
N ++H+ KDK + L FAAS G + ++ LL+ + LH++ K
Sbjct: 437 NVSIHSKSKDK----KSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAK 492
Query: 169 RRQYKVFELIMKDMRLSVPKWASRIDKKGYTLLHHVADMKHYKE 212
KV +L++K L + D G+T LHH A M Y +
Sbjct: 493 NGHDKVVQLLLKKGALFLS------DHNGWTALHH-ASMGGYTQ 529
>sp|Q0IEY3|EIF3B_AEDAE Eukaryotic translation initiation factor 3 subunit B OS=Aedes
aegypti GN=eIF3-S9 PE=3 SV=1
Length = 688
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 26/151 (17%)
Query: 6 DKLLKMLVKETPCLGDGEQNLEIFSPNPESSTTSSDKISIISLGLGKGNMLKA--KKLVD 63
++LL +K+ PC DG +N+ + D I ++ G + + L+ +KL
Sbjct: 38 EELLGDFLKQKPCESDGVENVIVV-----------DNIPVV--GPARFHKLQGVLEKLFK 84
Query: 64 FSAGELNELLLKKDCTNKGNMIKAKKFVDFSAGELVELFVKKDCTNKAVHNYKKDKNWAF 123
+ +N K D N + F++F E+ E V KA +NY+ DK+
Sbjct: 85 TAGTIVNIHYPKDDEEN----TRGYAFIEFKNPEMAEEAV------KAFNNYRLDKSHTL 134
Query: 124 RLTLLFAASNGITEILKEIIHQHPQAILLDN 154
L LF+ ++I KE PQ + N
Sbjct: 135 -LVNLFSDFQKYSDIPKEWSPPEPQPYKMQN 164
>sp|Q04B12|UVRC_LACDB UvrABC system protein C OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC BAA-365) GN=uvrC PE=3 SV=1
Length = 600
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 17/76 (22%)
Query: 59 KKLVDFSAGELNELLLKKDCTNKGNMIKAKKFVDFS-AGEL------VELFVKK------ 105
KK+ F G++ E+ KKD TNK M++A ++F AGEL +E V+K
Sbjct: 186 KKIKRFLNGDIQEV--KKDLTNK--MLQASADLEFERAGELRDQLKYIEETVEKQKIISN 241
Query: 106 DCTNKAVHNYKKDKNW 121
D T + + NY D++W
Sbjct: 242 DHTQRDIFNYYVDRSW 257
>sp|Q1GAM4|UVRC_LACDA UvrABC system protein C OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC 11842 / DSM 20081) GN=uvrC PE=3
SV=1
Length = 600
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 17/76 (22%)
Query: 59 KKLVDFSAGELNELLLKKDCTNKGNMIKAKKFVDFS-AGEL------VELFVKK------ 105
KK+ F G++ E+ KKD TNK M++A ++F AGEL +E V+K
Sbjct: 186 KKIKRFLNGDIQEV--KKDLTNK--MLQASADLEFERAGELRDQLKYIEETVEKQKIISN 241
Query: 106 DCTNKAVHNYKKDKNW 121
D T + + NY D++W
Sbjct: 242 DHTQRDIFNYYVDRSW 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,174,730
Number of Sequences: 539616
Number of extensions: 3328871
Number of successful extensions: 8957
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 8948
Number of HSP's gapped (non-prelim): 34
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)