BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044484
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 168/324 (51%), Gaps = 38/324 (11%)
Query: 1 MGVKGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALPFHSNSATVF 60
M VK F+ G A+ +A T PLD KVR+Q+QGE+ + +
Sbjct: 1 MTVK-FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVR------------------- 40
Query: 61 PSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDV 120
TA R G + + + +TEG +L++G+ A + RQ +++ R+GLYD
Sbjct: 41 ---------TAASAQYR-GVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDS 90
Query: 121 LKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPPAQRRNYKSV 180
+KQ +T K S + ++ AG +GA+ V P DV VR QA R +R Y+S
Sbjct: 91 VKQFYT-KGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRR--YQST 147
Query: 181 IDAITQMLRQEGVASLWRGSSLTVNRAMIVTASQLATYDQVKEMILKKGVMRDGLGTHVT 240
++A + R+EG+ LW+G+S V R IV ++L TYD +K+ +LK +M D L H T
Sbjct: 148 VEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFT 207
Query: 241 XXXXXXXXXXXXXNPVDVIKTRVMNMTVEAGRDPPYKGALDCALKTVRAEGPMALYKGFI 300
+PVDV+KTR MN + Y A CAL +R EGP A YKGF+
Sbjct: 208 SAFGAGFCTTVIASPVDVVKTRYMNSAL-----GQYHSAGHCALTMLRKEGPRAFYKGFM 262
Query: 301 PTISRQGPFTVVLFVTLEQVRKLL 324
P+ R G + VV+FVT EQ+++ L
Sbjct: 263 PSFLRLGSWNVVMFVTYEQLKRAL 286
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 10/142 (7%)
Query: 87 IFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMT--LSRKVAAGLI 144
I + EG+ L+ G S V R + + + YD++K T +N MT L +
Sbjct: 154 IAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKD--TLLKANLMTDDLPCHFTSAFG 211
Query: 145 SGAVGATVGNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTV 204
+G + +P DV R + Y S MLR+EG + ++G +
Sbjct: 212 AGFCTTVIASPVDVVKTRYM------NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSF 265
Query: 205 NRAMIVTASQLATYDQVKEMIL 226
R TY+Q+K ++
Sbjct: 266 LRLGSWNVVMFVTYEQLKRALM 287
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 139/330 (42%), Gaps = 48/330 (14%)
Query: 3 VKGFVEGGIASIVAGCSTHPLDLIKVRMQLQ--GENVAVPQQVHSLRPALPFHSNSATVF 60
+K F+ GG+A+ ++ + P++ +K+ +Q+Q + ++ +Q + +
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCV---------- 57
Query: 61 PSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDV 120
+ IP L G ++ ++ F T+ + F + Y +G D
Sbjct: 58 ----VRIPKEQGFLSFWRGNLANVIRYFPTQALNFAF---------KDKYKQIFLGGVDR 104
Query: 121 LKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPPAQRRNYKSV 180
KQ W N +A+G +GA P D A R+ AD AQ R + +
Sbjct: 105 HKQFWRYFAGN-------LASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQ-REFTGL 156
Query: 181 IDAITQMLRQEGVASLWRGSSLTVNRAMIVTASQLATYDQVKEMILKKGVMRDGLGTHVT 240
+ IT++ + +G+ L++G +++V +I A+ YD KG++ D H+
Sbjct: 157 GNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTA------KGMLPDPKNVHII 210
Query: 241 XXXXXXXXXXXXXN----PVDVIKTRVMNMTVEAGRDPPYKGALDCALKTVRAEGPMALY 296
P D ++ R+M + G D Y G +DC K + EGP A +
Sbjct: 211 VSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFF 270
Query: 297 KGFIPTISR--QGPFTVVLFVTLEQVRKLL 324
KG + R G F +VL+ ++++K +
Sbjct: 271 KGAWSNVLRGMGGAFVLVLY---DEIKKFV 297
>pdb|1R13|A Chain A, Carbohydrate Recognition And Neck Domains Of Surfactant
Protein A (Sp- A)
pdb|1R14|A Chain A, Carbohydrate Recognition And Neck Domains Of Surfactant
Protein A (Sp- A) Containing Samarium
pdb|3PAK|A Chain A, Crystal Structure Of Rat Surfactant Protein A Neck And
Carbohydrate Recognition Domain (Ncrd) Complexed With
Mannose
pdb|3PAQ|A Chain A, Surfactant Protein A Neck And Carbohydrate Recognition
Domain (Ncrd) Complexed With Alpha-Methylmannose
pdb|3PAR|A Chain A, Surfactant Protein-A Neck And Carbohydrate Recognition
Domain (Ncrd) In The Absence Of Ligand
pdb|3PBF|A Chain A, Surfactant Protein-A Neck And Carbohydrate Recognition
Domain (Ncrd) Complexed With Glycerol
Length = 148
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 186 QMLRQEGVASLWRGSSLTVNRAMIVTASQLATYDQVKEMILKKG 229
Q+L+ GV SL +GS L+V + T Q +D +KEM + G
Sbjct: 17 QILQTMGVLSL-QGSMLSVGDKVFSTNGQSVNFDTIKEMCTRAG 59
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 109 LYSTTRMGLYDVLKQKWTDK---DSNRMTLSRKVAAGLISGAVGATVGNPA 156
L+ RM Y+V+K W K + R +L+ A G I + G+ VGN A
Sbjct: 66 LFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSA 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,391,674
Number of Sequences: 62578
Number of extensions: 303405
Number of successful extensions: 669
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 13
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)