Query 044484
Match_columns 327
No_of_seqs 156 out of 1935
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 05:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 5.2E-57 1.8E-61 400.1 24.2 285 4-325 3-287 (303)
2 1okc_A ADP, ATP carrier protei 100.0 3.1E-56 1.1E-60 394.2 25.6 286 3-324 8-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 9.7E-36 3.3E-40 262.9 18.8 194 132-325 4-202 (297)
4 2lck_A Mitochondrial uncouplin 100.0 7.5E-35 2.6E-39 257.8 18.0 183 3-226 105-287 (303)
5 3tgu_G UQCRQ, mitochondrial ub 36.0 17 0.00057 24.3 1.7 36 291-326 33-68 (81)
6 1pp9_G Ubiquinol-cytochrome C 22.4 35 0.0012 22.7 1.4 47 272-326 22-68 (81)
7 3cx5_H Cytochrome B-C1 complex 20.5 52 0.0018 22.5 1.9 36 290-325 42-77 (93)
8 3vjj_A P9-1; 3.00A {Rice black 20.0 47 0.0016 27.6 1.9 36 247-292 273-308 (368)
9 3f2e_A SIRV coat protein; four 13.3 57 0.002 21.2 0.7 34 274-307 6-43 (100)
10 4b19_A PEPA1; toxin, toxin apo 12.8 37 0.0013 17.8 -0.3 23 236-258 4-26 (30)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=5.2e-57 Score=400.14 Aligned_cols=285 Identities=39% Similarity=0.674 Sum_probs=252.2
Q ss_pred hhhHHHhhHHHhHhhhcchhhHHHHHHhhcCcccccccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCcChHHH
Q 044484 4 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALPFHSNSATVFPSNSIHIPTTAPELPPRVGPISV 83 (327)
Q Consensus 4 ~~~~~g~~a~~~~~~~~~Pld~vk~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (327)
.++++|++||+++.+++||||+||+|+|++........ ......+++.+++
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~-----------------------------~~~~~~~~~~~~~ 53 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVR-----------------------------TAASAQYRGVLGT 53 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHH-----------------------------HCSCSSCSCHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccc-----------------------------cccCCCCCCHHHH
Confidence 57999999999999999999999999999865210000 0002346799999
Q ss_pred HHHHHHhhcHhhhhcChhHHHHHHhhhchhhHhhHHHHHHhhcccCCCccchHHHHHHHHHHHHHHhhhcCcHHHHHHHH
Q 044484 84 GVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRM 163 (327)
Q Consensus 84 ~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~r~ 163 (327)
+++|+++||++|||||+.+++++.++..+++|.+||.+++.+.+..+ ..+....+++|++|++++.++++|+|++|+|+
T Consensus 54 ~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrl 132 (303)
T 2lck_A 54 ILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRF 132 (303)
T ss_dssp HHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999876422 46678899999999999999999999999999
Q ss_pred hcCCCCCCcccCCCccHHHHHHHHHHhhchhhccccchhhhhhHHHHhhHHHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 044484 164 QADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNRAMIVTASQLATYDQVKEMILKKGVMRDGLGTHVTASF 243 (327)
Q Consensus 164 q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~g~ 243 (327)
|++... .....|++.++++++|+++||+++||||+.+++++.+|+.+++|.+||.+++.+.+....+.+....+++|+
T Consensus 133 q~~~~~--~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~ 210 (303)
T 2lck_A 133 QAQARA--GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAF 210 (303)
T ss_dssp HHSCSC--CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHH
T ss_pred hccccc--CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 998642 123578999999999999999999999999999999999999999999999988765444566788999999
Q ss_pred HHHHhhhhccchhHHHHHHHhhccccCCCCCCCCCHHHHHHHHHHhhCccccccchhHHHhhhccchhHHHHHHHHHHHH
Q 044484 244 AAGFVASVASNPVDVIKTRVMNMTVEAGRDPPYKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKL 323 (327)
Q Consensus 244 ~ag~~~~~~~~Pld~i~~r~q~~~~~~~~~~~~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~i~~~~ye~~~~~ 323 (327)
+||++++++++|+|+||+|+|.+.. ..|.++++|+++|+++||++|||||+.++++|.+|.++++|.+||.+++.
T Consensus 211 ~ag~~~~~~~~P~dvvktrlq~~~~-----~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~ 285 (303)
T 2lck_A 211 GAGFCTTVIASPVDVVKTRYMNSAL-----GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRA 285 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCS-----SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCHHHHHHHHHHhccc-----cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999764 36999999999999999999999999999999999999999999999977
Q ss_pred Hh
Q 044484 324 LK 325 (327)
Q Consensus 324 ~~ 325 (327)
+.
T Consensus 286 l~ 287 (303)
T 2lck_A 286 LM 287 (303)
T ss_dssp CC
T ss_pred HH
Confidence 64
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.1e-56 Score=394.25 Aligned_cols=286 Identities=24% Similarity=0.391 Sum_probs=242.9
Q ss_pred hhhhHHHhhHHHhHhhhcchhhHHHHHHhhcCcccccccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCcChHH
Q 044484 3 VKGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALPFHSNSATVFPSNSIHIPTTAPELPPRVGPIS 82 (327)
Q Consensus 3 ~~~~~~g~~a~~~~~~~~~Pld~vk~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (327)
++++++|++||+++.+++||||+||+|+|++...... .....+++.++
T Consensus 8 ~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~--------------------------------~~~~~~~~~~~ 55 (297)
T 1okc_A 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQI--------------------------------SAEKQYKGIID 55 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSC--------------------------------CGGGSCCSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccccccc--------------------------------ccccccccHHH
Confidence 5789999999999999999999999999998642100 00223679999
Q ss_pred HHHHHHHhhcHhhhhcChhHHHHHHhhhchhhHhhHHHHHHhhccc-CCC-c--cchHHHHHHHHHHHHHHhhhcCcHHH
Q 044484 83 VGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDK-DSN-R--MTLSRKVAAGLISGAVGATVGNPADV 158 (327)
Q Consensus 83 ~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~f~~~~~~~~~~~~~-~~~-~--~~~~~~~~~g~~a~~~~~~~~~Pld~ 158 (327)
++++|+++||++|||||+.+++++.++..+++|.+||.+++.+.+. +.. . ......+++|++|++++.++++|+|+
T Consensus 56 ~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~ 135 (297)
T 1okc_A 56 CVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDF 135 (297)
T ss_dssp HHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 9999999999999999999999999999999999999999954322 211 1 23467899999999999999999999
Q ss_pred HHHHHhcCCCCCCcccCCCccHHHHHHHHHHhhchhhccccchhhhhhHHHHhhHHHHHHHHHHHHHHhcCCCCCChhhH
Q 044484 159 AMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNRAMIVTASQLATYDQVKEMILKKGVMRDGLGTH 238 (327)
Q Consensus 159 ik~r~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 238 (327)
||+|+|++... ......|++.++++++++++||+++||||+.+++++.+|+.+++|.+||.+++.+.+.. +.+....
T Consensus 136 vktrlq~~~~~-~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~--~~~~~~~ 212 (297)
T 1okc_A 136 ARTRLAADVGK-GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK--NVHIIVS 212 (297)
T ss_dssp HHHHHHHCCCS-STTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG--CSCHHHH
T ss_pred HHHHHhccccC-CCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC--CccHHHH
Confidence 99999997542 12235789999999999999999999999999999999999999999999999764332 3567788
Q ss_pred HHHHHHHHHhhhhccchhHHHHHHHhhccccCCCCCCCCCHHHHHHHHHHhhCccccccchhHHHhhhccchhHHHHHHH
Q 044484 239 VTASFAAGFVASVASNPVDVIKTRVMNMTVEAGRDPPYKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLE 318 (327)
Q Consensus 239 ~~~g~~ag~~~~~~~~Pld~i~~r~q~~~~~~~~~~~~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~i~~~~ye 318 (327)
+++|+++|++++++++|+|+||+|+|.+....+....|+++++|+++|+|+||++|||||+.++++|. +.++++|.+||
T Consensus 213 ~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye 291 (297)
T 1okc_A 213 WMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYD 291 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHH
Confidence 99999999999999999999999999986533334579999999999999999999999999999996 57899999999
Q ss_pred HHHHHH
Q 044484 319 QVRKLL 324 (327)
Q Consensus 319 ~~~~~~ 324 (327)
.+++++
T Consensus 292 ~~k~~l 297 (297)
T 1okc_A 292 EIKKFV 297 (297)
T ss_dssp TC----
T ss_pred HHHhhC
Confidence 988754
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=9.7e-36 Score=262.89 Aligned_cols=194 Identities=20% Similarity=0.341 Sum_probs=168.4
Q ss_pred ccchHHHHHHHHHHHHHHhhhcCcHHHHHHHHhcCCCCCC-cccCCCccHHHHHHHHHHhhchhhccccchhhhhhHHHH
Q 044484 132 RMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPP-AQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNRAMIV 210 (327)
Q Consensus 132 ~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~r~q~~~~~~~-~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~l~~~~~~ 210 (327)
..+....+++|++|++++.++++|+|++|+|+|++..... .....|++.++++++++++||+++||||+.+.+++.+++
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 3456778999999999999999999999999999753211 123578999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCC----ChhhHHHHHHHHHHhhhhccchhHHHHHHHhhccccCCCCCCCCCHHHHHHHH
Q 044484 211 TASQLATYDQVKEMILKKGVMRD----GLGTHVTASFAAGFVASVASNPVDVIKTRVMNMTVEAGRDPPYKGALDCALKT 286 (327)
Q Consensus 211 ~~~~~~~y~~~~~~~~~~~~~~~----~~~~~~~~g~~ag~~~~~~~~Pld~i~~r~q~~~~~~~~~~~~~~~~~~~~~i 286 (327)
.+++|.+||.+++.+......+. .....+++|++||++++++++|+|+||+|+|.+....+....|.++++++++|
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i 163 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 163 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHH
Confidence 99999999999996543222122 24668899999999999999999999999999865433456799999999999
Q ss_pred HHhhCccccccchhHHHhhhccchhHHHHHHHHHHHHHh
Q 044484 287 VRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKLLK 325 (327)
Q Consensus 287 ~~~eG~~~ly~G~~~~~~~~~~~~~i~~~~ye~~~~~~~ 325 (327)
+++||++|||||+.+++++.+|..++.|.+||.+++.+.
T Consensus 164 ~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~ 202 (297)
T 1okc_A 164 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202 (297)
T ss_dssp HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998664
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=7.5e-35 Score=257.82 Aligned_cols=183 Identities=21% Similarity=0.312 Sum_probs=164.7
Q ss_pred hhhhHHHhhHHHhHhhhcchhhHHHHHHhhcCcccccccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCcChHH
Q 044484 3 VKGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALPFHSNSATVFPSNSIHIPTTAPELPPRVGPIS 82 (327)
Q Consensus 3 ~~~~~~g~~a~~~~~~~~~Pld~vk~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (327)
+.++++|++||+++.++++|+|+||+|+|++.... ....+++.++
T Consensus 105 ~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-----------------------------------~~~~~~~~~~ 149 (303)
T 2lck_A 105 GSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG-----------------------------------GGRRYQSTVE 149 (303)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCC-----------------------------------CSSSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccC-----------------------------------CCCCCCCHHH
Confidence 46799999999999999999999999999985410 0224679999
Q ss_pred HHHHHHHhhcHhhhhcChhHHHHHHhhhchhhHhhHHHHHHhhcccCCCccchHHHHHHHHHHHHHHhhhcCcHHHHHHH
Q 044484 83 VGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVR 162 (327)
Q Consensus 83 ~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~r 162 (327)
++++|+++||++|||||+.|++++.++..+++|.+||.+++.+.+......+....+++|++|+++++++++|+|+||+|
T Consensus 150 ~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktr 229 (303)
T 2lck_A 150 AYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTR 229 (303)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999987644445567788999999999999999999999999
Q ss_pred HhcCCCCCCcccCCCccHHHHHHHHHHhhchhhccccchhhhhhHHHHhhHHHHHHHHHHHHHH
Q 044484 163 MQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNRAMIVTASQLATYDQVKEMIL 226 (327)
Q Consensus 163 ~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~l~~~~~~~~~~~~~y~~~~~~~~ 226 (327)
+|.+.. ..|+++++++++++++||+++||||+.|+++|.+|..+++|.+||.+++.+.
T Consensus 230 lq~~~~------~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 230 YMNSAL------GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp HTTCCS------SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhccc------cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999753 4689999999999999999999999999999999999999999999997553
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=35.99 E-value=17 Score=24.30 Aligned_cols=36 Identities=6% Similarity=0.109 Sum_probs=28.9
Q ss_pred CccccccchhHHHhhhccchhHHHHHHHHHHHHHhh
Q 044484 291 GPMALYKGFIPTISRQGPFTVVLFVTLEQVRKLLKE 326 (327)
Q Consensus 291 G~~~ly~G~~~~~~~~~~~~~i~~~~ye~~~~~~~~ 326 (327)
|+...+|-+.-+++..+|...+.+.+|++..+.-++
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~ 68 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFER 68 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 455566666778888999999999999999887654
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=22.40 E-value=35 Score=22.74 Aligned_cols=47 Identities=11% Similarity=0.156 Sum_probs=35.7
Q ss_pred CCCCCCCHHHHHHHHHHhhCccccccchhHHHhhhccchhHHHHHHHHHHHHHhh
Q 044484 272 RDPPYKGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKLLKE 326 (327)
Q Consensus 272 ~~~~~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~i~~~~ye~~~~~~~~ 326 (327)
+++...++++ .|+...+|-+.-+.+..+|...+.+.+|++..+..++
T Consensus 22 ~Qr~~~g~~~--------~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~ 68 (81)
T 1pp9_G 22 EQRAFPHYFS--------KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEK 68 (81)
T ss_dssp TBCSSTTHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchHh--------hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHH
Confidence 4556666554 3566677777888888999999999999999887654
No 7
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=20.47 E-value=52 Score=22.52 Aligned_cols=36 Identities=3% Similarity=-0.065 Sum_probs=31.1
Q ss_pred hCccccccchhHHHhhhccchhHHHHHHHHHHHHHh
Q 044484 290 EGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKLLK 325 (327)
Q Consensus 290 eG~~~ly~G~~~~~~~~~~~~~i~~~~ye~~~~~~~ 325 (327)
.|+...+|-+.-+++..+|...+...+|++..+..+
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e 77 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNE 77 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHH
Confidence 477888888888889999999999999999887654
No 8
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=19.96 E-value=47 Score=27.65 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=26.5
Q ss_pred HhhhhccchhHHHHHHHhhccccCCCCCCCCCHHHHHHHHHHhhCc
Q 044484 247 FVASVASNPVDVIKTRVMNMTVEAGRDPPYKGALDCALKTVRAEGP 292 (327)
Q Consensus 247 ~~~~~~~~Pld~i~~r~q~~~~~~~~~~~~~~~~~~~~~i~~~eG~ 292 (327)
-++++=-||||.+|-.++... ++...+++.+.++|+
T Consensus 273 qLaTFdnypfdllRfqL~Sli----------stp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLI----------STPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCC----------CCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhhc----------cChHHHHHHHHhcCc
Confidence 355677899999998877654 334677888888884
No 9
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=13.26 E-value=57 Score=21.23 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHHHHhhCc----cccccchhHHHhhhc
Q 044484 274 PPYKGALDCALKTVRAEGP----MALYKGFIPTISRQG 307 (327)
Q Consensus 274 ~~~~~~~~~~~~i~~~eG~----~~ly~G~~~~~~~~~ 307 (327)
+++.++.+-+..++.+.|+ +.+|.|+...+.|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 4677777777888888887 458899988776653
No 10
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=12.77 E-value=37 Score=17.76 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHhhhhccchhHH
Q 044484 236 GTHVTASFAAGFVASVASNPVDV 258 (327)
Q Consensus 236 ~~~~~~g~~ag~~~~~~~~Pld~ 258 (327)
+..+++-.++|++-++++|-|+.
T Consensus 4 fv~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 4 FVHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp GTSSTTTTHHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHHHHHHHh
Confidence 34455667788888888887763
Done!