BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044488
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 19 SPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-DLKRGDEISQSLLDTIE 77
S + K+ +FLSFRG DTR NF S LY L +I TF D+ +L+ G S L IE
Sbjct: 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIE 61
Query: 78 ASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVFCRVDPSH 125
S ++++ SE YA+S WCLDEL+ I++ + V+P+F V+P+H
Sbjct: 62 VSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNH 109
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 65/104 (62%), Gaps = 2/104 (1%)
Query: 23 SNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTI 81
S ++ +FLSFRG DTR+ FT LY +L I TF D+D L +G EI +LL I+ S I
Sbjct: 33 SVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKI 92
Query: 82 SIIIFSERYASSGWCLDELLKILECK-HDYGQIVIPVFCRVDPS 124
+ I S YA S WCL EL +I+ + D +I++P+F VDPS
Sbjct: 93 YVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPS 136
>pdb|3DC5|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC5|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 195
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 46 YSALCHNNIETFIDNDLKRGDEISQSLLDTIE------------ASTISIIIFSERYASS 93
++ H N F N K G E S+ L+DTI+ S I+I + +
Sbjct: 67 FNGGGHINHSIFWTNLAKDGGEPSKELMDTIKRDFGSLDNLQKRLSDITIAVQGSGWGWL 126
Query: 94 GWC-LDELLKILECK-HDYGQIVIPVF 118
G+C D++LKI C D + ++P+F
Sbjct: 127 GYCKKDKILKIATCANQDPLEGMVPLF 153
>pdb|2XSX|A Chain A, Crystal Structure Of Human Beta Enolase Enob
pdb|2XSX|B Chain B, Crystal Structure Of Human Beta Enolase Enob
Length = 435
Score = 28.9 bits (63), Expect = 0.68, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 23 SNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIET 56
SN G+ +S R +T D F + L LC I+T
Sbjct: 363 SNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 396
>pdb|2PSN|A Chain A, Crystal Structure Of Enolase1
pdb|2PSN|B Chain B, Crystal Structure Of Enolase1
pdb|2PSN|C Chain C, Crystal Structure Of Enolase1
pdb|2PSN|D Chain D, Crystal Structure Of Enolase1
Length = 434
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 23 SNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIET 56
+N G+ +S R +T D F + L LC I+T
Sbjct: 362 ANGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 395
>pdb|3B97|A Chain A, Crystal Structure Of Human Enolase 1
pdb|3B97|B Chain B, Crystal Structure Of Human Enolase 1
pdb|3B97|C Chain C, Crystal Structure Of Human Enolase 1
pdb|3B97|D Chain D, Crystal Structure Of Human Enolase 1
Length = 433
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 23 SNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIET 56
+N G+ +S R +T D F + L LC I+T
Sbjct: 361 ANGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 394
>pdb|1FYX|A Chain A, Crystal Structure Of P681h Mutant Of Tir Domain Of Human
Tlr2
Length = 149
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 61 DLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDEL 100
D G I +++D+IE S ++ + SE + S W EL
Sbjct: 43 DFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYEL 82
>pdb|4G1B|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|B Chain B, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|C Chain C, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|D Chain D, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1V|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin
Length = 399
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 4 RNNEYDVSVMASSSPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLK 63
+ N+YD S + S K+G+ + + E R+NF + L S H D K
Sbjct: 199 QENQYDALRHYSLCSA---STKNGLRFAVKMEAARENFPAGLVSEYLH--------KDAK 247
Query: 64 RGDEISQS 71
GDEI S
Sbjct: 248 VGDEIKLS 255
>pdb|1TE6|A Chain A, Crystal Structure Of Human Neuron Specific Enolase At 1.8
Angstrom
pdb|1TE6|B Chain B, Crystal Structure Of Human Neuron Specific Enolase At 1.8
Angstrom
pdb|2AKM|A Chain A, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKM|B Chain B, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKZ|A Chain A, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKZ|B Chain B, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
Length = 439
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 24 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIET 56
N G+ +S R +T D F + L LC I+T
Sbjct: 362 NGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 394
>pdb|3UJE|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-3-PgaPEP
pdb|3UJE|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-3-PgaPEP
pdb|3UJF|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-4-PgaPEP
pdb|3UJF|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-4-PgaPEP
pdb|3UJR|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-5-PgaPEP
pdb|3UJR|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-5-PgaPEP
pdb|3UJS|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-6-PgaPEP
pdb|3UJS|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-6-PgaPEP
Length = 443
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 24 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIET 56
N G+ +S R +T D F + L LC I+T
Sbjct: 362 NGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 394
>pdb|3UCC|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-1-PgaPEP
pdb|3UCC|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-1-PgaPEP
pdb|3UCD|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-2-PgaPEP
pdb|3UCD|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-2-PgaPEP
Length = 439
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 24 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIET 56
N G+ +S R +T D F + L LC I+T
Sbjct: 362 NGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 394
>pdb|1O77|A Chain A, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
pdb|1O77|B Chain B, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
pdb|1O77|C Chain C, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
pdb|1O77|D Chain D, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
pdb|1O77|E Chain E, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
Length = 146
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 61 DLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDEL 100
D G I +++D+IE S ++ + SE + S W EL
Sbjct: 40 DFIPGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWSKYEL 79
>pdb|1FYW|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr2
Length = 149
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 61 DLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDEL 100
D G I +++D+IE S ++ + SE + S W EL
Sbjct: 43 DFIPGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYEL 82
>pdb|3IYD|C Chain C, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|4IGC|C Chain C, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
pdb|4IGC|H Chain H, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
Length = 1342
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 51 HNNIETFIDNDLKRGDEISQSL 72
H IET NDL G IS++L
Sbjct: 330 HKRIETLFTNDLDHGPYISETL 351
>pdb|3LU0|C Chain C, Molecular Model Of Escherichia Coli Core Rna Polymerase
Length = 1342
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 51 HNNIETFIDNDLKRGDEISQSL 72
H IET NDL G IS++L
Sbjct: 330 HKRIETLFTNDLDHGPYISETL 351
>pdb|3TQP|A Chain A, Structure Of An Enolase (Eno) From Coxiella Burnetii
pdb|3TQP|B Chain B, Structure Of An Enolase (Eno) From Coxiella Burnetii
Length = 428
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 23 SNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQ 70
SNK+G+ +S R +T D + L A I+T L R D +++
Sbjct: 356 SNKYGVIISHRSGETEDTTIADLAVATDARQIKT---GSLCRSDRVAK 400
>pdb|1QB0|A Chain A, Human Cdc25b Catalytic Domain
pdb|1CWS|A Chain A, Human Cdc25b Catalytic Domain With Tungstate
pdb|1CWR|A Chain A, Human Cdc25b Catalytic Domain Without Ion In Catalytic
Site
Length = 211
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 47 SALCHNNIETFIDNDLKR--GDEISQSLLDTIEAS 79
+LCH+ IE +D+D + GD LL T++
Sbjct: 5 KSLCHDEIENLLDSDHRELIGDYSKAFLLQTVDGK 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,628,604
Number of Sequences: 62578
Number of extensions: 126867
Number of successful extensions: 372
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 25
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)