Query 044488
Match_columns 125
No_of_seqs 127 out of 1041
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 05:56:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044488.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044488hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1E-37 3.6E-42 230.2 6.8 109 17-125 27-137 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 1E-37 3.5E-42 226.2 5.7 106 20-125 3-109 (176)
3 3h16_A TIR protein; bacteria T 100.0 1E-33 3.5E-38 200.4 4.7 105 20-125 15-120 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.9 4E-29 1.4E-33 176.0 2.5 102 20-123 5-109 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 1.4E-27 4.7E-32 168.4 2.2 100 22-123 2-107 (149)
6 2js7_A Myeloid differentiation 99.9 4.6E-27 1.6E-31 167.6 4.3 101 20-122 11-116 (160)
7 1t3g_A X-linked interleukin-1 99.9 2.3E-26 7.9E-31 163.9 6.2 97 24-120 1-111 (159)
8 2j67_A TOLL like receptor 10; 99.9 1.1E-26 3.8E-31 168.3 4.0 99 20-120 30-133 (178)
9 3j0a_A TOLL-like receptor 5; m 99.8 1.4E-20 4.7E-25 160.5 7.0 100 21-122 666-773 (844)
10 1eiw_A Hypothetical protein MT 98.5 1.2E-07 4.1E-12 63.5 4.2 72 24-118 3-74 (111)
11 3hyn_A Putative signal transdu 97.2 0.0011 3.7E-08 47.8 7.2 78 40-120 32-118 (189)
12 2f62_A Nucleoside 2-deoxyribos 95.9 0.049 1.7E-06 38.1 8.1 75 39-117 26-104 (161)
13 2khz_A C-MYC-responsive protei 93.0 0.7 2.4E-05 32.0 8.4 86 24-117 10-109 (165)
14 3ehd_A Uncharacterized conserv 91.2 1.4 4.9E-05 30.6 8.1 75 39-118 19-104 (162)
15 4fyk_A Deoxyribonucleoside 5'- 90.4 1.5 5.2E-05 30.3 7.6 72 39-118 18-101 (152)
16 1s2d_A Purine trans deoxyribos 88.5 2.9 9.8E-05 29.1 7.9 74 39-117 22-115 (167)
17 1f8y_A Nucleoside 2-deoxyribos 77.0 6.4 0.00022 27.0 5.8 74 39-117 18-112 (157)
18 2yvq_A Carbamoyl-phosphate syn 72.9 18 0.00061 24.1 8.7 62 28-91 27-107 (143)
19 1byr_A Protein (endonuclease); 66.5 19 0.00064 23.3 6.1 36 41-77 15-51 (155)
20 2d00_A V-type ATP synthase sub 58.3 25 0.00087 22.4 5.3 43 47-92 16-58 (109)
21 2jug_A TUBC protein; docking d 55.0 11 0.00036 22.5 2.9 36 43-78 8-47 (78)
22 1sc3_B Interleukin-1 beta conv 54.5 3.4 0.00011 25.7 0.5 25 29-53 21-45 (88)
23 2ql9_B Caspase-7; cysteine pro 51.1 3.9 0.00013 25.7 0.4 24 30-53 24-47 (97)
24 1qtn_B Caspase-8; apoptosis, d 50.6 3.8 0.00013 25.7 0.3 29 25-53 12-49 (95)
25 3aon_B V-type sodium ATPase su 49.0 16 0.00055 23.7 3.2 50 47-102 15-64 (115)
26 2dko_B Caspase-3; low barrier 47.1 4.9 0.00017 25.6 0.4 29 25-53 16-53 (103)
27 1pyo_B Caspase-2; apoptosis, c 46.7 5 0.00017 25.6 0.4 24 30-53 28-51 (105)
28 3l4e_A Uncharacterized peptida 46.0 74 0.0025 22.3 7.0 57 25-84 28-85 (206)
29 4g85_A Histidine-tRNA ligase, 45.3 52 0.0018 26.3 6.3 60 24-87 418-478 (517)
30 1wu7_A Histidyl-tRNA synthetas 44.8 44 0.0015 25.9 5.7 57 25-85 332-389 (434)
31 2pw6_A Uncharacterized protein 44.0 38 0.0013 25.0 5.0 69 39-109 95-164 (271)
32 1v95_A Nuclear receptor coacti 44.0 68 0.0023 21.3 6.4 47 38-85 20-67 (130)
33 1evl_A Threonyl-tRNA synthetas 43.8 35 0.0012 26.3 4.9 60 25-88 298-357 (401)
34 3net_A Histidyl-tRNA synthetas 43.3 29 0.001 27.5 4.5 62 24-89 370-431 (465)
35 4g84_A Histidine--tRNA ligase, 43.0 44 0.0015 26.0 5.5 60 24-87 365-425 (464)
36 3ftb_A Histidinol-phosphate am 41.3 72 0.0024 23.0 6.2 62 48-111 114-177 (361)
37 3lc0_A Histidyl-tRNA synthetas 41.1 48 0.0016 26.3 5.4 61 24-88 360-420 (456)
38 1ccw_A Protein (glutamate muta 38.7 76 0.0026 20.6 5.4 87 27-121 5-92 (137)
39 2xzd_B Caspase-3; hydrolase-pr 38.5 8.4 0.00029 25.2 0.5 24 30-53 29-52 (118)
40 2i2x_B MTAC, methyltransferase 38.0 55 0.0019 23.7 5.0 85 27-121 125-211 (258)
41 3ikl_A DNA polymerase subunit 37.5 89 0.003 25.1 6.5 52 36-89 361-414 (459)
42 1bax_A M-PMV MA, M-PMV matrix 36.2 18 0.00063 22.9 1.8 18 39-56 9-26 (94)
43 1qe0_A Histidyl-tRNA synthetas 35.9 36 0.0012 26.1 3.9 60 24-88 328-388 (420)
44 3rjm_B Caspase-2; caspase-2, c 33.9 10 0.00035 24.8 0.3 29 25-53 15-52 (117)
45 4e51_A Histidine--tRNA ligase; 33.4 46 0.0016 26.4 4.2 63 25-88 354-417 (467)
46 2e4u_A Metabotropic glutamate 32.6 68 0.0023 25.4 5.1 35 28-62 189-223 (555)
47 3sm9_A Mglur3, metabotropic gl 32.2 40 0.0014 26.4 3.6 53 28-80 188-243 (479)
48 3pid_A UDP-glucose 6-dehydroge 31.7 42 0.0014 26.6 3.7 50 35-84 347-401 (432)
49 2a5l_A Trp repressor binding p 31.6 92 0.0032 20.7 5.1 54 39-93 20-85 (200)
50 3h5l_A Putative branched-chain 30.9 68 0.0023 24.0 4.7 58 27-85 166-224 (419)
51 3mwd_B ATP-citrate synthase; A 30.4 1.2E+02 0.0041 23.1 6.0 46 45-92 70-117 (334)
52 3kbq_A Protein TA0487; structu 29.2 52 0.0018 22.7 3.4 46 40-85 23-69 (172)
53 3ks9_A Mglur1, metabotropic gl 29.2 54 0.0018 25.8 3.9 33 28-60 200-232 (496)
54 1qf6_A THRRS, threonyl-tRNA sy 29.0 1E+02 0.0035 25.5 5.7 61 25-89 539-599 (642)
55 1nj1_A PROR, proline-tRNA synt 28.7 40 0.0014 27.1 3.1 43 25-67 314-361 (501)
56 3h16_A TIR protein; bacteria T 28.5 78 0.0027 20.8 4.2 64 51-118 18-81 (154)
57 2j3l_A Prolyl-tRNA synthetase; 28.2 81 0.0028 25.4 4.9 61 26-89 471-533 (572)
58 2i4r_A V-type ATP synthase sub 28.0 57 0.002 20.5 3.2 44 47-92 22-65 (102)
59 3n0x_A Possible substrate bind 27.8 93 0.0032 22.8 4.9 53 27-80 143-196 (374)
60 2i4l_A Proline-tRNA ligase; al 27.8 24 0.00083 27.9 1.7 37 25-61 365-403 (458)
61 1jdp_A NPR-C, atrial natriuret 27.8 83 0.0028 23.7 4.7 30 28-57 157-189 (441)
62 2h1v_A Ferrochelatase; rossman 27.7 92 0.0031 23.2 4.8 63 41-105 63-134 (310)
63 3hjn_A DTMP kinase, thymidylat 27.4 86 0.0029 21.5 4.4 31 29-59 2-34 (197)
64 1nyr_A Threonyl-tRNA synthetas 27.3 61 0.0021 26.7 4.1 58 26-87 546-604 (645)
65 1ati_A Glycyl-tRNA synthetase; 27.3 68 0.0023 25.8 4.3 61 25-89 398-461 (505)
66 1htt_A Histidyl-tRNA synthetas 27.2 76 0.0026 24.3 4.4 58 24-85 326-386 (423)
67 2zt5_A Glycyl-tRNA synthetase; 26.8 99 0.0034 26.0 5.3 60 26-88 560-620 (693)
68 3ojo_A CAP5O; rossmann fold, c 26.7 72 0.0025 25.2 4.2 52 35-87 330-383 (431)
69 4ggj_A Mitochondrial cardiolip 26.7 1.5E+02 0.0053 20.2 6.0 35 43-77 49-83 (196)
70 1ydg_A Trp repressor binding p 26.5 51 0.0018 22.4 3.0 54 39-93 21-92 (211)
71 2f5t_X Archaeal transcriptiona 25.8 1.5E+02 0.0051 21.3 5.6 20 66-85 9-28 (233)
72 2lpy_A Matrix protein P10; GAG 25.8 31 0.001 22.9 1.6 18 39-56 8-25 (124)
73 3pzy_A MOG; ssgcid, seattle st 25.1 67 0.0023 21.7 3.4 45 40-84 27-72 (164)
74 2hfv_A Hypothetical protein RP 24.7 50 0.0017 20.9 2.4 33 27-61 22-54 (97)
75 2p5s_A RAS and EF-hand domain 24.5 1.5E+02 0.0052 19.4 6.2 27 64-90 85-112 (199)
76 3t18_A Aminotransferase class 24.3 2.2E+02 0.0074 21.0 6.5 39 70-108 164-209 (413)
77 2fcj_A Small toprim domain pro 24.1 29 0.00098 22.8 1.2 64 41-107 40-104 (119)
78 1egw_A MADS box transcription 24.1 21 0.00071 21.6 0.5 33 75-107 36-68 (77)
79 4evq_A Putative ABC transporte 24.0 2E+02 0.0069 20.6 6.1 40 40-80 166-206 (375)
80 3hly_A Flavodoxin-like domain; 23.8 1.6E+02 0.0054 19.2 9.1 50 39-92 15-64 (161)
81 4a7p_A UDP-glucose dehydrogena 23.6 72 0.0025 25.2 3.7 61 35-95 337-406 (446)
82 3h6g_A Glutamate receptor, ion 23.5 1.1E+02 0.0039 22.5 4.7 39 41-80 153-191 (395)
83 1dlj_A UDP-glucose dehydrogena 23.3 1.1E+02 0.0039 23.4 4.8 54 31-84 318-379 (402)
84 4f21_A Carboxylesterase/phosph 22.9 1.5E+02 0.0052 20.7 5.1 33 26-58 184-218 (246)
85 1svv_A Threonine aldolase; str 22.7 1.3E+02 0.0045 21.4 4.8 41 69-109 128-175 (359)
86 2is8_A Molybdopterin biosynthe 22.5 1.3E+02 0.0043 20.1 4.4 45 40-84 21-68 (164)
87 4hde_A SCO1/SENC family lipopr 22.4 1.7E+02 0.0058 19.1 5.5 44 80-124 33-79 (170)
88 3d7n_A Flavodoxin, WRBA-like p 22.1 1.8E+02 0.0063 19.4 5.5 48 39-93 21-68 (193)
89 3p57_A Myocyte-specific enhanc 21.9 28 0.00097 21.7 0.8 32 75-106 36-67 (90)
90 3s83_A Ggdef family protein; s 21.6 2.1E+02 0.0072 19.9 6.1 66 45-115 144-213 (259)
91 3czq_A Putative polyphosphate 21.5 1.6E+02 0.0056 22.1 5.2 95 27-124 86-202 (304)
92 4h3d_A 3-dehydroquinate dehydr 21.4 1.1E+02 0.0038 22.2 4.1 63 48-111 107-169 (258)
93 3bul_A Methionine synthase; tr 21.3 2.8E+02 0.0096 22.8 6.9 86 27-121 100-186 (579)
94 3u5e_c L32, RP73, YL38, 60S ri 21.3 1.5E+02 0.0053 18.2 4.8 32 71-104 29-60 (105)
95 1z0f_A RAB14, member RAS oncog 21.2 1.6E+02 0.0055 18.4 6.6 29 64-92 72-101 (179)
96 4h0c_A Phospholipase/carboxyle 20.9 1.8E+02 0.0061 19.7 5.0 34 25-58 151-186 (210)
97 3rq1_A Aminotransferase class 20.9 2.6E+02 0.0088 20.6 7.1 39 70-108 165-210 (418)
98 3czx_A Putative N-acetylmuramo 20.7 1.4E+02 0.0048 20.4 4.4 46 39-85 31-77 (182)
99 3en0_A Cyanophycinase; serine 20.7 1.3E+02 0.0045 22.3 4.5 58 27-86 59-118 (291)
100 3sg0_A Extracellular ligand-bi 20.6 1.3E+02 0.0045 21.7 4.4 17 40-56 174-190 (386)
101 2l82_A Designed protein OR32; 20.5 1.9E+02 0.0064 18.9 7.0 46 66-118 62-110 (162)
102 2bon_A Lipid kinase; DAG kinas 20.5 2.6E+02 0.0087 20.7 6.1 34 25-60 31-64 (332)
103 3t5x_B 26S proteasome complex 20.4 47 0.0016 19.8 1.5 18 38-55 49-66 (70)
104 3snr_A Extracellular ligand-bi 20.0 1.4E+02 0.0048 21.3 4.5 40 40-80 150-190 (362)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1e-37 Score=230.23 Aligned_cols=109 Identities=43% Similarity=0.720 Sum_probs=97.6
Q ss_pred CCCCCCCCeeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCchh
Q 044488 17 SPSPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGW 95 (125)
Q Consensus 17 ~~~~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~w 95 (125)
++++.++++|||||||+++|+++.|+.+|+++|+++||++|+|++ +++|+.|.++|.+||++|+++|+|||++|+.|.|
T Consensus 27 ~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~W 106 (204)
T 3ozi_A 27 PSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKW 106 (204)
T ss_dssp -------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHH
T ss_pred CcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcH
Confidence 335677899999999999999889999999999999999999987 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhh-CCCEEEEEEeecCCCC
Q 044488 96 CLDELLKILECKHD-YGQIVIPVFCRVDPSH 125 (125)
Q Consensus 96 c~~El~~~~~~~~~-~~~~IiPI~~~v~ps~ 125 (125)
|++||..|+++.++ .+++||||||+|+|++
T Consensus 107 Cl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~ 137 (204)
T 3ozi_A 107 CLMELAEIVRRQEEDPRRIILPIFYMVDPSD 137 (204)
T ss_dssp HHHHHHHHHHHHHHCTTSEECCEEESSCHHH
T ss_pred HHHHHHHHHHHHHhcCCeeeEEEEeecCHHH
Confidence 99999999998865 5789999999999974
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1e-37 Score=226.17 Aligned_cols=106 Identities=42% Similarity=0.794 Sum_probs=85.7
Q ss_pred CCCCCeeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCchhhHH
Q 044488 20 PRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLD 98 (125)
Q Consensus 20 ~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~ 98 (125)
++++++|||||||+++|+++.|+.+|+++|+++|+++|+|++ +.+|+.|.++|.+||++|+++|+|||++|++|.||++
T Consensus 3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~ 82 (176)
T 3jrn_A 3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD 82 (176)
T ss_dssp ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence 345688999999999999889999999999999999999977 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCCEEEEEEeecCCCC
Q 044488 99 ELLKILECKHDYGQIVIPVFCRVDPSH 125 (125)
Q Consensus 99 El~~~~~~~~~~~~~IiPI~~~v~ps~ 125 (125)
||..++++.++.+++||||||+|+|+|
T Consensus 83 EL~~i~~~~~~~~~~ViPIfy~V~ps~ 109 (176)
T 3jrn_A 83 ELVTIMDFEKKGSITVMPIFYGVEPNH 109 (176)
T ss_dssp HHHHHHHHHHTTSCEEEEEECSSCHHH
T ss_pred HHHHHHhhhccCCCEEEEEEecCCHHH
Confidence 999999998888999999999999974
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.98 E-value=1e-33 Score=200.39 Aligned_cols=105 Identities=22% Similarity=0.411 Sum_probs=96.4
Q ss_pred CCCCCeeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCchhhHH
Q 044488 20 PRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLD 98 (125)
Q Consensus 20 ~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~ 98 (125)
..+.++|||||||+++| +..|+.+|..+|+++|+++|+|.+ +.+|+.|.++|.++|++|+++|+|+|++|+.|.||+.
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 35678999999999999 457999999999999999999997 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCCEEEEEEeecCCCC
Q 044488 99 ELLKILECKHDYGQIVIPVFCRVDPSH 125 (125)
Q Consensus 99 El~~~~~~~~~~~~~IiPI~~~v~ps~ 125 (125)
||..++++.++++.+||||||+++|++
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~ 120 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDE 120 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGG
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHH
Confidence 999999877777789999999999974
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.95 E-value=4e-29 Score=176.05 Aligned_cols=102 Identities=18% Similarity=0.304 Sum_probs=77.4
Q ss_pred CCCCCeeeEEEeceeccCcccHHHHHHHHHcc--CCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCchhh
Q 044488 20 PRNSNKHGIFLSFRGEDTRDNFTSHLYSALCH--NNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWC 96 (125)
Q Consensus 20 ~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~--~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc 96 (125)
...++.|||||||+++|+ .||.+|..+|++ .|+++|++++ +.+|+.+.++|.++|++|+.+|+|+|++|++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 556789999999999996 589999999998 5999999887 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCCEEEEEEeecCC
Q 044488 97 LDELLKILECKHDYGQIVIPVFCRVDP 123 (125)
Q Consensus 97 ~~El~~~~~~~~~~~~~IiPI~~~v~p 123 (125)
+.|+..++.+......+||||++++++
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~ 109 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSR 109 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCG
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCCh
Confidence 999999998763333478899988764
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.93 E-value=1.4e-27 Score=168.41 Aligned_cols=100 Identities=17% Similarity=0.279 Sum_probs=89.0
Q ss_pred CCCeeeEEEeceeccCcccHHHH-HHHHHccC--CeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCchhhH
Q 044488 22 NSNKHGIFLSFRGEDTRDNFTSH-LYSALCHN--NIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCL 97 (125)
Q Consensus 22 ~~~~yDVFISys~~D~~~~fv~~-L~~~L~~~--Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~ 97 (125)
.++.|||||||+++|. .||.+ |..+|++. |+++|+|++ +.+|+.+.++|.++|++|+.+|+|+|++|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4678999999999996 69986 99999986 999999987 999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hhhCCCEEEEEEee-cCC
Q 044488 98 DELLKILEC-KHDYGQIVIPVFCR-VDP 123 (125)
Q Consensus 98 ~El~~~~~~-~~~~~~~IiPI~~~-v~p 123 (125)
.|+..++.. .++++.+||||+|+ +++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~ 107 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEK 107 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCT
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCCh
Confidence 999998853 34566789999995 443
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.93 E-value=4.6e-27 Score=167.64 Aligned_cols=101 Identities=14% Similarity=0.206 Sum_probs=89.2
Q ss_pred CCCCCeeeEEEeceeccCcccHHHHHHHHHccC--CeeeEEeCC-CCCCccchHHHHHHHH-hcceEEEEecCCccCchh
Q 044488 20 PRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHN--NIETFIDND-LKRGDEISQSLLDTIE-ASTISIIIFSERYASSGW 95 (125)
Q Consensus 20 ~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~-~~~G~~~~~~i~~aI~-~s~~~IvvlS~~~~~S~w 95 (125)
...++.|||||||+++|. .||.+|..+|++. |+++|++++ +.+|+.+.++|.++|+ +|+.+|+|+|++|++|.|
T Consensus 11 ~~~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 444678999999999994 7999999999984 699999887 9999999999999999 799999999999999999
Q ss_pred hHHHHHHHHHhh-hhCCCEEEEEEeecC
Q 044488 96 CLDELLKILECK-HDYGQIVIPVFCRVD 122 (125)
Q Consensus 96 c~~El~~~~~~~-~~~~~~IiPI~~~v~ 122 (125)
|+.|+..++.+. ++++.+||||+|+.-
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~ 116 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAM 116 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEccc
Confidence 999999999864 334568999999643
No 7
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.93 E-value=2.3e-26 Score=163.87 Aligned_cols=97 Identities=22% Similarity=0.337 Sum_probs=86.4
Q ss_pred CeeeEEEeceeccC---------cccHHHHHHH-HHc-cCCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCcc
Q 044488 24 NKHGIFLSFRGEDT---------RDNFTSHLYS-ALC-HNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYA 91 (125)
Q Consensus 24 ~~yDVFISys~~D~---------~~~fv~~L~~-~L~-~~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~ 91 (125)
+.|||||||+++|. ++.||.+|.. .|+ +.|+++|++++ +.+|+.+.++|.++|++|+.+|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 57999999999996 2568888665 699 79999999887 999999999999999999999999999997
Q ss_pred -CchhhHHHHHHHHHhh-hhCCCEEEEEEee
Q 044488 92 -SSGWCLDELLKILECK-HDYGQIVIPVFCR 120 (125)
Q Consensus 92 -~S~wc~~El~~~~~~~-~~~~~~IiPI~~~ 120 (125)
.|.||+.|+..++.+. ++++.+||||+++
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~ 111 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECS 111 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 9999999999999865 5567899999985
No 8
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.93 E-value=1.1e-26 Score=168.34 Aligned_cols=99 Identities=20% Similarity=0.372 Sum_probs=85.5
Q ss_pred CCCCCeeeEEEeceeccCcccHHHH-HHHHHcc--CCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCchh
Q 044488 20 PRNSNKHGIFLSFRGEDTRDNFTSH-LYSALCH--NNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGW 95 (125)
Q Consensus 20 ~~~~~~yDVFISys~~D~~~~fv~~-L~~~L~~--~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~w 95 (125)
...++.|||||||+++|+ .||.+ |...|++ +|+++|++++ +.+|+.+.++|.++|++|+.+|+|+|++|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 456789999999999995 79975 9999998 8999999887 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhh-hhCCCEEEEEEee
Q 044488 96 CLDELLKILECK-HDYGQIVIPVFCR 120 (125)
Q Consensus 96 c~~El~~~~~~~-~~~~~~IiPI~~~ 120 (125)
|+.|+..++.+. ++++.+||||+|+
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~ 133 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLE 133 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 999999998644 4456789999995
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=1.4e-20 Score=160.53 Aligned_cols=100 Identities=19% Similarity=0.306 Sum_probs=89.2
Q ss_pred CCCCeeeEEEeceeccCcccHH-HHHHHHHcc-----CCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCc
Q 044488 21 RNSNKHGIFLSFRGEDTRDNFT-SHLYSALCH-----NNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASS 93 (125)
Q Consensus 21 ~~~~~yDVFISys~~D~~~~fv-~~L~~~L~~-----~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S 93 (125)
...+.|||||||+++|. .|| .+|...||. .|+++|++++ +.||+.+.++|.++|++||.+|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 35689999999999995 577 679999985 5899999988 99999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhh-hhCCCEEEEEEeecC
Q 044488 94 GWCLDELLKILECK-HDYGQIVIPVFCRVD 122 (125)
Q Consensus 94 ~wc~~El~~~~~~~-~~~~~~IiPI~~~v~ 122 (125)
.||..|+..|+.+. ++++++||||+|+--
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~ 773 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSL 773 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCC
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccC
Confidence 99999999998765 456789999999643
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.48 E-value=1.2e-07 Score=63.52 Aligned_cols=72 Identities=11% Similarity=0.026 Sum_probs=53.8
Q ss_pred CeeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCccCchhhHHHHHHH
Q 044488 24 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKI 103 (125)
Q Consensus 24 ~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~ 103 (125)
++|.+||||+..| . ...|...|.+.|+.. .| +.|+.|+++|++.++....|+||..|+..+
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~-~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEW-RP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSCE-EE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCee-ec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 5799999999987 2 344555554445432 22 678999999999999999999999999877
Q ss_pred HHhhhhCCCEEEEEE
Q 044488 104 LECKHDYGQIVIPVF 118 (125)
Q Consensus 104 ~~~~~~~~~~IiPI~ 118 (125)
.+ .+.+||-|.
T Consensus 64 ~~----~gkpIigV~ 74 (111)
T 1eiw_A 64 RK----SSKPIITVR 74 (111)
T ss_dssp TT----TTCCEEEEC
T ss_pred HH----cCCCEEEEE
Confidence 54 455777665
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.23 E-value=0.0011 Score=47.83 Aligned_cols=78 Identities=18% Similarity=0.122 Sum_probs=56.4
Q ss_pred cHHHHHHHHHccCCeeeEEeCC-C----CC----CccchHHHHHHHHhcceEEEEecCCccCchhhHHHHHHHHHhhhhC
Q 044488 40 NFTSHLYSALCHNNIETFIDND-L----KR----GDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDY 110 (125)
Q Consensus 40 ~fv~~L~~~L~~~Gi~vf~d~~-~----~~----G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~~~~~~~~ 110 (125)
.+.+.|+.--.....--|.|.. . .. -+.|...+.+.|..|+.+|+++|++...|.|...|+..+++ +.
T Consensus 32 ~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~~ 108 (189)
T 3hyn_A 32 VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---TK 108 (189)
T ss_dssp HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---TT
T ss_pred HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---hc
Confidence 4555666655444444455642 2 22 24577899999999999999999999999999999999873 23
Q ss_pred CCEEEEEEee
Q 044488 111 GQIVIPVFCR 120 (125)
Q Consensus 111 ~~~IiPI~~~ 120 (125)
+.+||-|..+
T Consensus 109 ~~PII~Vy~~ 118 (189)
T 3hyn_A 109 GLPVIVIYPD 118 (189)
T ss_dssp CCCEEEEETT
T ss_pred CCcEEEEECC
Confidence 5578877644
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=95.88 E-value=0.049 Score=38.11 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=54.2
Q ss_pred ccHHHHHHHHHccCCeeeEEeCC--CCCCccchHHHHHHHHhcceEEEEecC--CccCchhhHHHHHHHHHhhhhCCCEE
Q 044488 39 DNFTSHLYSALCHNNIETFIDND--LKRGDEISQSLLDTIEASTISIIIFSE--RYASSGWCLDELLKILECKHDYGQIV 114 (125)
Q Consensus 39 ~~fv~~L~~~L~~~Gi~vf~d~~--~~~G~~~~~~i~~aI~~s~~~IvvlS~--~~~~S~wc~~El~~~~~~~~~~~~~I 114 (125)
..+...+.+.|+.+|+.+|...+ ......+.+.=.++|++|+++|++++| .-..++-+..|+..+.... ++|
T Consensus 26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Alg----KPV 101 (161)
T 2f62_A 26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN----KMV 101 (161)
T ss_dssp HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT----CEE
T ss_pred HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCC----CEE
Confidence 47889999999999999987543 222233334447899999999999996 4445666889999987643 366
Q ss_pred EEE
Q 044488 115 IPV 117 (125)
Q Consensus 115 iPI 117 (125)
|-+
T Consensus 102 i~l 104 (161)
T 2f62_A 102 LTF 104 (161)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=93.05 E-value=0.7 Score=31.96 Aligned_cols=86 Identities=12% Similarity=0.135 Sum_probs=55.5
Q ss_pred CeeeEEEeceec-cCccc-HHHHHHHHHccCCeeeEEeCCCCC-----Cc-------cchHHHHHHHHhcceEEEEecCC
Q 044488 24 NKHGIFLSFRGE-DTRDN-FTSHLYSALCHNNIETFIDNDLKR-----GD-------EISQSLLDTIEASTISIIIFSER 89 (125)
Q Consensus 24 ~~yDVFISys~~-D~~~~-fv~~L~~~L~~~Gi~vf~d~~~~~-----G~-------~~~~~i~~aI~~s~~~IvvlS~~ 89 (125)
++..|||+=.-. +.... ....+.+.|+..| .|+.+....+ |. .+...-.+.|++|+++|++++
T Consensus 10 ~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~-- 86 (165)
T 2khz_A 10 APCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT-- 86 (165)
T ss_dssp CCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS--
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC--
Confidence 345799985322 21112 4588999999999 8765432211 21 122333478999999999997
Q ss_pred ccCchhhHHHHHHHHHhhhhCCCEEEEE
Q 044488 90 YASSGWCLDELLKILECKHDYGQIVIPV 117 (125)
Q Consensus 90 ~~~S~wc~~El~~~~~~~~~~~~~IiPI 117 (125)
..+.-+..|+..+... +.+||-+
T Consensus 87 -~~d~Gt~~EiGyA~al----gKPVi~l 109 (165)
T 2khz_A 87 -QPSLGVGYELGRAVAL----GKPILCL 109 (165)
T ss_dssp -SCCHHHHHHHHHHHHT----CSSEEEE
T ss_pred -CCCCCHHHHHHHHHHC----CCEEEEE
Confidence 5677889999998764 3355543
No 14
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=91.15 E-value=1.4 Score=30.65 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=51.9
Q ss_pred ccHHHHHHHHHccC--CeeeEEeCC-C----CCCccch----HHHHHHHHhcceEEEEecCCccCchhhHHHHHHHHHhh
Q 044488 39 DNFTSHLYSALCHN--NIETFIDND-L----KRGDEIS----QSLLDTIEASTISIIIFSERYASSGWCLDELLKILECK 107 (125)
Q Consensus 39 ~~fv~~L~~~L~~~--Gi~vf~d~~-~----~~G~~~~----~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~~~~~ 107 (125)
..+..++.++|+.+ |+.+|...+ - .++..+. +.=.++|++|+++|.++. ....+..+..|+..+...
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~- 96 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAK- 96 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHC-
Confidence 35778899999865 899987543 1 1223333 334457999999999995 445678899999998864
Q ss_pred hhCCCEEEEEE
Q 044488 108 HDYGQIVIPVF 118 (125)
Q Consensus 108 ~~~~~~IiPI~ 118 (125)
+.+|+.+.
T Consensus 97 ---gkPVi~~~ 104 (162)
T 3ehd_A 97 ---GIPVVALY 104 (162)
T ss_dssp ---TCCEEEEC
T ss_pred ---CCEEEEEE
Confidence 34666553
No 15
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=90.42 E-value=1.5 Score=30.27 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=48.3
Q ss_pred ccHHHHHHHHHccCCeeeEE---eCC-C-CCCc-------cchHHHHHHHHhcceEEEEecCCccCchhhHHHHHHHHHh
Q 044488 39 DNFTSHLYSALCHNNIETFI---DND-L-KRGD-------EISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILEC 106 (125)
Q Consensus 39 ~~fv~~L~~~L~~~Gi~vf~---d~~-~-~~G~-------~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~~~~ 106 (125)
..+...+.+.|++.| .|+- ... + ..|+ .+.+.-.++|++|+++|++++ ..+.-...|+..+...
T Consensus 18 ~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~d~Gt~~EiG~A~al 93 (152)
T 4fyk_A 18 QALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QPSLGVGYELGRAVAL 93 (152)
T ss_dssp HHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CCCCCHHHHHHHHHHc
Confidence 357789999999999 6753 111 1 1122 244555678999999999998 6677888999998864
Q ss_pred hhhCCCEEEEEE
Q 044488 107 KHDYGQIVIPVF 118 (125)
Q Consensus 107 ~~~~~~~IiPI~ 118 (125)
. .+|+-++
T Consensus 94 g----kPV~~l~ 101 (152)
T 4fyk_A 94 G----KPILCLF 101 (152)
T ss_dssp T----CCEEEEE
T ss_pred C----CeEEEEE
Confidence 3 3555443
No 16
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=88.46 E-value=2.9 Score=29.10 Aligned_cols=74 Identities=18% Similarity=0.125 Sum_probs=51.1
Q ss_pred ccHHHHHHHHHccC--CeeeEEeCC--C--------CCC--------ccchHHHHHHHHhcceEEEEecCCccCchhhHH
Q 044488 39 DNFTSHLYSALCHN--NIETFIDND--L--------KRG--------DEISQSLLDTIEASTISIIIFSERYASSGWCLD 98 (125)
Q Consensus 39 ~~fv~~L~~~L~~~--Gi~vf~d~~--~--------~~G--------~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~ 98 (125)
..+..++.+.|+.+ |+.+|...+ . ..+ ..+.+.=.++|++|+++|+++...- .+.-+..
T Consensus 22 ~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vVA~ldg~~-~D~GTa~ 100 (167)
T 1s2d_A 22 RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVFLYDMDQ-LDDGSAF 100 (167)
T ss_dssp HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEEEEEESSS-CCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEEEECCCCC-CCCCcee
Confidence 46788999999999 888886433 2 111 1223344568999999999998644 4567788
Q ss_pred HHHHHHHhhhhCCCEEEEE
Q 044488 99 ELLKILECKHDYGQIVIPV 117 (125)
Q Consensus 99 El~~~~~~~~~~~~~IiPI 117 (125)
|+..+... +.+|+-+
T Consensus 101 EiGyA~al----gKPVv~l 115 (167)
T 1s2d_A 101 XIGFMRAM----HKPVILV 115 (167)
T ss_dssp HHHHHHHT----TCCEEEE
T ss_pred ehhhHhhC----CCeEEEE
Confidence 99998764 3356554
No 17
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=76.95 E-value=6.4 Score=26.96 Aligned_cols=74 Identities=16% Similarity=0.093 Sum_probs=49.3
Q ss_pred ccHHHHHHHHHccCCe----eeEEeCC--C--------CC---C----ccchHHHHHHHHhcceEEEEecCCccCchhhH
Q 044488 39 DNFTSHLYSALCHNNI----ETFIDND--L--------KR---G----DEISQSLLDTIEASTISIIIFSERYASSGWCL 97 (125)
Q Consensus 39 ~~fv~~L~~~L~~~Gi----~vf~d~~--~--------~~---G----~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~ 97 (125)
..+..++.+.|+.+|. .+|...+ . .. + ..+.+.=.++|++|+++|.++...- .+.-+.
T Consensus 18 ~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vvA~ldg~~-~D~GT~ 96 (157)
T 1f8y_A 18 NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIPDE-EDVGLG 96 (157)
T ss_dssp HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCGGG-CCHHHH
T ss_pred HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEEEEEcCCCC-CCccHH
Confidence 4677889999999885 6766433 1 11 1 1223344568999999999998433 456788
Q ss_pred HHHHHHHHhhhhCCCEEEEE
Q 044488 98 DELLKILECKHDYGQIVIPV 117 (125)
Q Consensus 98 ~El~~~~~~~~~~~~~IiPI 117 (125)
.|+..+.... .+|+-+
T Consensus 97 ~EiGyA~A~g----kPVv~~ 112 (157)
T 1f8y_A 97 MELGYALSQG----KYVLLV 112 (157)
T ss_dssp HHHHHHHHTT----CEEEEE
T ss_pred HHHHHHHHCC----CeEEEE
Confidence 8999987643 466554
No 18
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=72.91 E-value=18 Score=24.06 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=40.2
Q ss_pred EEEeceeccCcccHHHHHHHHHccCCeeeEEe-------------CC-C---CCC-c-cchHHHHHHHHhcceEEEEecC
Q 044488 28 IFLSFRGEDTRDNFTSHLYSALCHNNIETFID-------------ND-L---KRG-D-EISQSLLDTIEASTISIIIFSE 88 (125)
Q Consensus 28 VFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d-------------~~-~---~~G-~-~~~~~i~~aI~~s~~~IvvlS~ 88 (125)
||||.+..|. .-+-.+.+.|...|++++-- -. + ..| + .-.++|.+.|.+-++-+||.+|
T Consensus 27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 9999987664 33445677888888877621 11 1 112 1 0004688999999999999988
Q ss_pred Ccc
Q 044488 89 RYA 91 (125)
Q Consensus 89 ~~~ 91 (125)
+-.
T Consensus 105 ~~~ 107 (143)
T 2yvq_A 105 NNN 107 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 19
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=66.52 E-value=19 Score=23.34 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=16.4
Q ss_pred HHHHHHHHHccCCeeeEEeCC-CCCCccchHHHHHHHH
Q 044488 41 FTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIE 77 (125)
Q Consensus 41 fv~~L~~~L~~~Gi~vf~d~~-~~~G~~~~~~i~~aI~ 77 (125)
+...|.+.++...-.+++-.- + +.+.+.+.+.++.+
T Consensus 15 ~~~~~~~~i~~A~~~I~i~~~~~-~~~~i~~aL~~a~~ 51 (155)
T 1byr_A 15 ARVLVLSAIDSAKTSIRMMAYSF-TAPDIMKALVAAKK 51 (155)
T ss_dssp HHHHHHHHHHHCSSEEEEEESSB-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhEEEEEEEEe-CCHHHHHHHHHHHH
Confidence 445566666544334443322 3 33444445554443
No 20
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=58.34 E-value=25 Score=22.43 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=31.3
Q ss_pred HHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCccC
Q 044488 47 SALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYAS 92 (125)
Q Consensus 47 ~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~ 92 (125)
..++..|+.+|.. ...+.+.+.+.+.+++-++.|++++.+.+.
T Consensus 16 ~GFrLaGi~~~~v---~~~ee~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 16 QGFRLAGLEGYGA---SSAEEAQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp HHHHHTTSEEEEC---SSHHHHHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred HHHHHcCCeEEEe---CCHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 4455678888753 233556666777777778999999999888
No 21
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=54.97 E-value=11 Score=22.53 Aligned_cols=36 Identities=8% Similarity=0.249 Sum_probs=25.3
Q ss_pred HHHHHHHccCCeeeEEeCC-CC---CCccchHHHHHHHHh
Q 044488 43 SHLYSALCHNNIETFIDND-LK---RGDEISQSLLDTIEA 78 (125)
Q Consensus 43 ~~L~~~L~~~Gi~vf~d~~-~~---~G~~~~~~i~~aI~~ 78 (125)
..|...|+..|++.|.+.+ +. |-..+.+++...+..
T Consensus 8 ~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~ 47 (78)
T 2jug_A 8 GALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGG 47 (78)
T ss_dssp HHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHH
Confidence 4577889999999999886 42 334466666666643
No 22
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=54.51 E-value=3.4 Score=25.65 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=17.8
Q ss_pred EEeceeccCcccHHHHHHHHHccCC
Q 044488 29 FLSFRGEDTRDNFTSHLYSALCHNN 53 (125)
Q Consensus 29 FISys~~D~~~~fv~~L~~~L~~~G 53 (125)
|.||++...+-.|+..|.+.|+++|
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 4566655555679999999988654
No 23
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=51.10 E-value=3.9 Score=25.66 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=15.4
Q ss_pred EeceeccCcccHHHHHHHHHccCC
Q 044488 30 LSFRGEDTRDNFTSHLYSALCHNN 53 (125)
Q Consensus 30 ISys~~D~~~~fv~~L~~~L~~~G 53 (125)
.||++.+.+-.|+..|.+.|+++|
T Consensus 24 ~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 24 YSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp CCEEETTTEEHHHHHHHHHHHHHT
T ss_pred EeeecCCCCCeeHHHHHHHHHHhC
Confidence 444444445578888888887644
No 24
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=50.56 E-value=3.8 Score=25.69 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=18.4
Q ss_pred eeeEEEecee---------ccCcccHHHHHHHHHccCC
Q 044488 25 KHGIFLSFRG---------EDTRDNFTSHLYSALCHNN 53 (125)
Q Consensus 25 ~yDVFISys~---------~D~~~~fv~~L~~~L~~~G 53 (125)
.-|.+++|+. .+.+-.|+..|.+.|+++|
T Consensus 12 ~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 12 EADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp TCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHG
T ss_pred CCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHhC
Confidence 4577776653 3334468888888887644
No 25
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=48.97 E-value=16 Score=23.72 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=32.8
Q ss_pred HHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCccCchhhHHHHHH
Q 044488 47 SALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLK 102 (125)
Q Consensus 47 ~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~ 102 (125)
-.++..|+.+|.. ..-+.+.+.+.+.+++ ++.|++++.+.++. +.+++..
T Consensus 15 ~GFrLaGie~~~v---~~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~ 64 (115)
T 3aon_B 15 SPFRLFGFDVQHG---TTKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER 64 (115)
T ss_dssp GGGGGGTCEEECC---CSHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH
T ss_pred HHHHHcCCeEEEe---CCHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH
Confidence 3456678887753 2334566667777777 99999999987763 4444444
No 26
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=47.06 E-value=4.9 Score=25.56 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=18.3
Q ss_pred eeeEEEecee---------ccCcccHHHHHHHHHccCC
Q 044488 25 KHGIFLSFRG---------EDTRDNFTSHLYSALCHNN 53 (125)
Q Consensus 25 ~yDVFISys~---------~D~~~~fv~~L~~~L~~~G 53 (125)
.-|.+++|+. ...+-.|+..|.+.|+++|
T Consensus 16 ~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 16 EADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp TTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 3566666653 3334568888888887644
No 27
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=46.68 E-value=5 Score=25.61 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=15.1
Q ss_pred EeceeccCcccHHHHHHHHHccCC
Q 044488 30 LSFRGEDTRDNFTSHLYSALCHNN 53 (125)
Q Consensus 30 ISys~~D~~~~fv~~L~~~L~~~G 53 (125)
+||++....-.|+..|.+.|+++|
T Consensus 28 ~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 28 AAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp CCEEETTTEEHHHHHHHHHHHHHT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHC
Confidence 334444444578888888887644
No 28
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=46.04 E-value=74 Score=22.29 Aligned_cols=57 Identities=11% Similarity=-0.001 Sum_probs=37.7
Q ss_pred eeeEEEeceecc-CcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEE
Q 044488 25 KHGIFLSFRGED-TRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISII 84 (125)
Q Consensus 25 ~yDVFISys~~D-~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~Iv 84 (125)
..=+||-|.+.+ ....++..+.++|++.|+.+-.- ++.. .-.+++.+.|++++.+++
T Consensus 28 ~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~-~i~~--~~~~~~~~~l~~ad~I~l 85 (206)
T 3l4e_A 28 KTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEEL-DIAT--ESLGEITTKLRKNDFIYV 85 (206)
T ss_dssp CEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEEC-CTTT--SCHHHHHHHHHHSSEEEE
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEE-EecC--CChHHHHHHHHhCCEEEE
Confidence 345699997652 22357888999999999876442 1222 223456678899998765
No 29
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=45.26 E-value=52 Score=26.26 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=37.8
Q ss_pred CeeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHh-cceEEEEec
Q 044488 24 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEA-STISIIIFS 87 (125)
Q Consensus 24 ~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~-s~~~IvvlS 87 (125)
...||||..-+.+. ...+..|...|++.|+++-+|. ..+..+..++..|=.. ... ++|+.
T Consensus 418 ~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~--~~~~~l~~q~k~A~~~g~~~-~viiG 478 (517)
T 4g85_A 418 TETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLY--KKNPKLLNQLQYCEEAGIPL-VAIIG 478 (517)
T ss_dssp CCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECS--SSSCCHHHHHHHHHHHCCCE-EEEEC
T ss_pred CCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEe--CCCCCHHHHHHHHHHCCCCE-EEEEC
Confidence 45899987654433 3567789999999999997753 2333455566555333 344 44443
No 30
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=44.81 E-value=44 Score=25.93 Aligned_cols=57 Identities=11% Similarity=0.190 Sum_probs=36.3
Q ss_pred eeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHH-hcceEEEE
Q 044488 25 KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIE-ASTISIII 85 (125)
Q Consensus 25 ~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~-~s~~~Ivv 85 (125)
.+||+|-.-+++. ...+..|...|++.|++|-+|.. +..+...+..|-. .+...|+|
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~~~~iii 389 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIF 389 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHCCCCEEEEE
Confidence 4899866544443 46788999999999999988753 2344444444322 34444443
No 31
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=44.04 E-value=38 Score=25.04 Aligned_cols=69 Identities=13% Similarity=0.059 Sum_probs=45.8
Q ss_pred ccHHHHHHHHHccCCeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEecCCccCchhhHHHHHHHHHhhhh
Q 044488 39 DNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHD 109 (125)
Q Consensus 39 ~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~~~~~~~ 109 (125)
-.++.++.+.|...|+.+-..+. +-.|--.. +.-.--+.++=||-+|-+...++--..+|.+++...++
T Consensus 95 peLA~~i~~~l~~~g~~~~~~~~glDHG~~vP--L~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lrd 164 (271)
T 2pw6_A 95 PALAQRLVELLAPIPVTLDKEAWGFDHGSWGV--LIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRD 164 (271)
T ss_dssp HHHHHHHHHHHTTSCEEEESSCCCCCHHHHHH--HHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchhhh--HHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 47999999999999997654333 55555433 22222456666777887766666655699998875543
No 32
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=43.98 E-value=68 Score=21.26 Aligned_cols=47 Identities=15% Similarity=0.124 Sum_probs=32.2
Q ss_pred cccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHH-hcceEEEE
Q 044488 38 RDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIE-ASTISIII 85 (125)
Q Consensus 38 ~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~-~s~~~Ivv 85 (125)
...++..+...|...|+++=+|.. ..++.+...|.++-. ..-++|+|
T Consensus 20 ~~~YA~~V~~~L~~~GiRvevD~~-r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 20 TKDYAESVGRKVRDLGMVVDLIFL-NTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp GGHHHHHHHHHHHTTTCCEEEEEC-TTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred hHHHHHHHHHHHHHCCCEEEEecC-CCCCcHHHHHHHHHHcCCCEEEEE
Confidence 358999999999999999988641 236777767766533 33334443
No 33
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=43.81 E-value=35 Score=26.27 Aligned_cols=60 Identities=8% Similarity=0.153 Sum_probs=38.0
Q ss_pred eeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecC
Q 044488 25 KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSE 88 (125)
Q Consensus 25 ~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~ 88 (125)
.++|+|---+++ ....+..|...|++.|++|-+|.. +..+..++..|=..---+++++.+
T Consensus 298 p~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~k~~~A~~~g~p~~iiiG~ 357 (401)
T 1evl_A 298 PVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLVCGD 357 (401)
T ss_dssp SSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEEECH
T ss_pred CeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEECc
Confidence 478988654433 346788999999999999999864 334555555543322223444433
No 34
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=43.28 E-value=29 Score=27.49 Aligned_cols=62 Identities=3% Similarity=0.027 Sum_probs=40.0
Q ss_pred CeeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCC
Q 044488 24 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSER 89 (125)
Q Consensus 24 ~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~ 89 (125)
..+||+|-.-+++. ...+..|...|++.|++|-+|.. +..+..++..|-..---.++++.++
T Consensus 370 ~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~---~~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 370 TPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE---KRQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp CSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHcCCCEEEEECch
Confidence 34799986644443 35788899999999999988753 3445555555544333355555544
No 35
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=43.01 E-value=44 Score=25.98 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=37.8
Q ss_pred CeeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHH-hcceEEEEec
Q 044488 24 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIE-ASTISIIIFS 87 (125)
Q Consensus 24 ~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~-~s~~~IvvlS 87 (125)
...||+|...+.+. ...+..|...|++.|+++-+|. ..+..+..++..|=. .+.. ++|+.
T Consensus 365 ~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~--~~~~~l~~q~k~A~~~g~~~-~viiG 425 (464)
T 4g84_A 365 TETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLY--KKNPKLLNQLQYCEEAGIPL-VAIIG 425 (464)
T ss_dssp CCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCS--CSSCCHHHHHHHHHHHTCCE-EEECC
T ss_pred ccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEe--CCCCCHHHHHHHHHHCCCCE-EEEEC
Confidence 45789998765543 3567789999999999996653 233345555555433 2444 44443
No 36
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=41.28 E-value=72 Score=23.03 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=35.4
Q ss_pred HHccCCeee-EEeCCCCCCccchHHHHHHHHhcceEEEEecCCcc-CchhhHHHHHHHHHhhhhCC
Q 044488 48 ALCHNNIET-FIDNDLKRGDEISQSLLDTIEASTISIIIFSERYA-SSGWCLDELLKILECKHDYG 111 (125)
Q Consensus 48 ~L~~~Gi~v-f~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~-~S~wc~~El~~~~~~~~~~~ 111 (125)
.++..|.++ +++-+-..+-.+ +.+.+++.. ..+|++.+|+.- ..-+..+|+..+.+..++.+
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~~~-~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~ 177 (361)
T 3ftb_A 114 NAKKHGVSVVFSYLDENMCIDY-EDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKK 177 (361)
T ss_dssp HHHHTTCEEEEEECCTTSCCCH-HHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCeEEEeecCcccCCCH-HHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcC
Confidence 344457654 333221112223 678888887 677778888653 34455667777776554433
No 37
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=41.14 E-value=48 Score=26.31 Aligned_cols=61 Identities=7% Similarity=-0.048 Sum_probs=39.2
Q ss_pred CeeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecC
Q 044488 24 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSE 88 (125)
Q Consensus 24 ~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~ 88 (125)
...||||..-+++. ...+-.+...|++.|+++-++. .+..+..++..|-+.--..++++.+
T Consensus 360 ~~~~v~v~~~~~~~-~~~a~~la~~LR~~Gi~ve~~~---~~~slkkq~k~A~k~ga~~vviiGe 420 (456)
T 3lc0_A 360 HVVDDVVIPFDESM-RPHALAVLRRLRDAGRSADIIL---DKKKVVQAFNYADRVGAVRAVLVAP 420 (456)
T ss_dssp CCEEEEEEESSGGG-HHHHHHHHHHHHHTTCCEEECC---SCCCHHHHHHHHHHTTEEEEEEECH
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHHCCCeEEEec---CCCCHHHHHHHHHHcCCCEEEEECC
Confidence 34788876655543 2456788999999999998763 2334666666665543345555553
No 38
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=38.75 E-value=76 Score=20.56 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=45.5
Q ss_pred eEEEeceeccCcccHHHH-HHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCccCchhhHHHHHHHHH
Q 044488 27 GIFLSFRGEDTRDNFTSH-LYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILE 105 (125)
Q Consensus 27 DVFISys~~D~~~~fv~~-L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~~~ 105 (125)
-|++.--..|. +.+-.. +...|+..|+.|..-. + .--.+++.+++.+.+.-++.+|-......--..++...++
T Consensus 5 ~vvla~~~~d~-HdiG~~~v~~~l~~~G~~Vi~lG---~-~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~ 79 (137)
T 1ccw_A 5 TIVLGVIGSDC-HAVGNKILDHAFTNAGFNVVNIG---V-LSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCD 79 (137)
T ss_dssp EEEEEEETTCC-CCHHHHHHHHHHHHTTCEEEEEE---E-EECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHH
T ss_pred EEEEEeCCCch-hHHHHHHHHHHHHHCCCEEEECC---C-CCCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHH
Confidence 35665444553 444433 4557889999987411 1 1223467777777777666666555443222334333333
Q ss_pred hhhhCCCEEEEEEeec
Q 044488 106 CKHDYGQIVIPVFCRV 121 (125)
Q Consensus 106 ~~~~~~~~IiPI~~~v 121 (125)
.. .... +||+...
T Consensus 80 ~~-g~~~--i~v~vGG 92 (137)
T 1ccw_A 80 EA-GLEG--ILLYVGG 92 (137)
T ss_dssp HT-TCTT--CEEEEEE
T ss_pred hc-CCCC--CEEEEEC
Confidence 21 1112 6777754
No 39
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=38.46 E-value=8.4 Score=25.22 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=15.5
Q ss_pred EeceeccCcccHHHHHHHHHccCC
Q 044488 30 LSFRGEDTRDNFTSHLYSALCHNN 53 (125)
Q Consensus 30 ISys~~D~~~~fv~~L~~~L~~~G 53 (125)
+||++....-.|+..|.+.|++.|
T Consensus 29 vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 29 YSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp CCCEETTTEEHHHHHHHHHHHHHT
T ss_pred EeeEeCCCCCccHHHHHHHHHHhC
Confidence 344444444578889998887644
No 40
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=38.00 E-value=55 Score=23.69 Aligned_cols=85 Identities=11% Similarity=0.181 Sum_probs=47.0
Q ss_pred eEEEeceeccCcccHHHH-HHHHHccCCeeeE-EeCCCCCCccchHHHHHHHHhcceEEEEecCCccCchhhHHHHHHHH
Q 044488 27 GIFLSFRGEDTRDNFTSH-LYSALCHNNIETF-IDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKIL 104 (125)
Q Consensus 27 DVFISys~~D~~~~fv~~-L~~~L~~~Gi~vf-~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~~ 104 (125)
-|.+.--..|. +.+-.. +...|+.+|+.|. +..+. | .+++.+++.+.+.-++.+|-....+. ..+...+
T Consensus 125 ~vlla~~~gd~-HdiG~~iva~~L~~~G~~Vi~LG~~v-p----~e~l~~~~~~~~~d~V~lS~l~~~~~---~~~~~~i 195 (258)
T 2i2x_B 125 TVVCHVAEGDV-HDIGKNIVTALLRANGYNVVDLGRDV-P----AEEVLAAVQKEKPIMLTGTALMTTTM---YAFKEVN 195 (258)
T ss_dssp EEEEEECTTCC-CCHHHHHHHHHHHHTTCEEEEEEEEC-C----SHHHHHHHHHHCCSEEEEECCCTTTT---THHHHHH
T ss_pred eEEEEeCCCCc-cHHHHHHHHHHHHHCCCEEEECCCCC-C----HHHHHHHHHHcCCCEEEEEeeccCCH---HHHHHHH
Confidence 45554434443 455544 4456789999984 44322 1 23566777777777777776544433 3343333
Q ss_pred HhhhhCCCEEEEEEeec
Q 044488 105 ECKHDYGQIVIPVFCRV 121 (125)
Q Consensus 105 ~~~~~~~~~IiPI~~~v 121 (125)
+..++.+.. +||+++.
T Consensus 196 ~~l~~~~~~-~~v~vGG 211 (258)
T 2i2x_B 196 DMLLENGIK-IPFACGG 211 (258)
T ss_dssp HHHHTTTCC-CCEEEES
T ss_pred HHHHhcCCC-CcEEEEC
Confidence 333333334 8888764
No 41
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=37.50 E-value=89 Score=25.09 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=30.6
Q ss_pred cCcccHHHHHHHHHccCCeeeE--EeCCCCCCccchHHHHHHHHhcceEEEEecCC
Q 044488 36 DTRDNFTSHLYSALCHNNIETF--IDNDLKRGDEISQSLLDTIEASTISIIIFSER 89 (125)
Q Consensus 36 D~~~~fv~~L~~~L~~~Gi~vf--~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~ 89 (125)
|.-..++..|.+.|++.|++|. +|++ .+..+...+.++=..---+++++.++
T Consensus 361 e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr--~~~siGkK~r~Ad~iGiPy~IiVG~k 414 (459)
T 3ikl_A 361 LELRQVCQGLFNELLENGISVWPGYLET--MQSSLEQLYSKYDEMSILFTVLVTET 414 (459)
T ss_dssp TTHHHHHHHHHHHHHHTSCCEECGGGSS--SCCTTHHHHHHHGGGTCSEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeecCC--cCCCHHHHHHHHHHcCCCEEEEECch
Confidence 4445789999999999999998 6542 12333334444322222244555544
No 42
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=36.15 E-value=18 Score=22.88 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=16.5
Q ss_pred ccHHHHHHHHHccCCeee
Q 044488 39 DNFTSHLYSALCHNNIET 56 (125)
Q Consensus 39 ~~fv~~L~~~L~~~Gi~v 56 (125)
..|+..|...|..+|++|
T Consensus 9 q~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV 26 (94)
T ss_pred hHHHHHHHHHHHHcCeee
Confidence 369999999999999998
No 43
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=35.86 E-value=36 Score=26.13 Aligned_cols=60 Identities=18% Similarity=0.306 Sum_probs=37.1
Q ss_pred CeeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHH-hcceEEEEecC
Q 044488 24 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIE-ASTISIIIFSE 88 (125)
Q Consensus 24 ~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~-~s~~~IvvlS~ 88 (125)
..++|+|-.-+.+. ...+..|...|+..|++|-+|.. +..+...+..|-. ... .++++.+
T Consensus 328 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p-~~iiig~ 388 (420)
T 1qe0_A 328 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL---QRKIKGQMKQADRLGAK-FTIVIGD 388 (420)
T ss_dssp CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS---CCCHHHHHHHHHHTTCS-EEEEECH
T ss_pred CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecC---CCCHHHHHHHHHHcCCC-EEEEECc
Confidence 34789876544332 35778899999999999998753 2344444544433 233 4444443
No 44
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=33.87 E-value=10 Score=24.78 Aligned_cols=29 Identities=3% Similarity=0.169 Sum_probs=18.6
Q ss_pred eeeEEEece---------eccCcccHHHHHHHHHccCC
Q 044488 25 KHGIFLSFR---------GEDTRDNFTSHLYSALCHNN 53 (125)
Q Consensus 25 ~yDVFISys---------~~D~~~~fv~~L~~~L~~~G 53 (125)
.-|.+++|+ ....+..|+..|.+.|++.|
T Consensus 15 eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 15 RSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp SCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred ccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHhC
Confidence 355665554 33344578888988887654
No 45
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=33.41 E-value=46 Score=26.41 Aligned_cols=63 Identities=10% Similarity=0.210 Sum_probs=40.6
Q ss_pred eeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCC-CCCccchHHHHHHHHhcceEEEEecC
Q 044488 25 KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDL-KRGDEISQSLLDTIEASTISIIIFSE 88 (125)
Q Consensus 25 ~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~-~~G~~~~~~i~~aI~~s~~~IvvlS~ 88 (125)
..||+|-.-+.+. ...+..+...|++.|++|-+|..- ..+..+..++..|-..---+++|+.+
T Consensus 354 p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG~ 417 (467)
T 4e51_A 354 GVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGE 417 (467)
T ss_dssp CCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEECH
T ss_pred CCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEECc
Confidence 4789876544432 356788999999999999987530 12567777777765433334455543
No 46
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=32.61 E-value=68 Score=25.41 Aligned_cols=35 Identities=9% Similarity=-0.081 Sum_probs=20.1
Q ss_pred EEEeceeccCcccHHHHHHHHHccCCeeeEEeCCC
Q 044488 28 IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDL 62 (125)
Q Consensus 28 VFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~ 62 (125)
|.|=|+..|-...++..|.++|++.|+.+-....+
T Consensus 189 V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~ 223 (555)
T 2e4u_A 189 VSTVASEGDYGETGIEAFEQEARLRNICIATAEKV 223 (555)
T ss_dssp EEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEE
T ss_pred EEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEe
Confidence 44444443434456677777777778766443333
No 47
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=32.24 E-value=40 Score=26.41 Aligned_cols=53 Identities=8% Similarity=0.004 Sum_probs=27.7
Q ss_pred EEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCC--C-ccchHHHHHHHHhcc
Q 044488 28 IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKR--G-DEISQSLLDTIEAST 80 (125)
Q Consensus 28 VFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~--G-~~~~~~i~~aI~~s~ 80 (125)
|-|=|+..|....++..|.+++++.|+.+-....+.. + ..+...+.+.|..+.
T Consensus 188 V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~ 243 (479)
T 3sm9_A 188 VSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPN 243 (479)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTT
T ss_pred EEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCC
Confidence 3333443333456777788888888876654443432 2 233333335555433
No 48
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=31.74 E-value=42 Score=26.63 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=32.9
Q ss_pred ccCcccHHHHHHHHHccCCeeeEEeCC-CC----CCccchHHHHHHHHhcceEEE
Q 044488 35 EDTRDNFTSHLYSALCHNNIETFIDND-LK----RGDEISQSLLDTIEASTISII 84 (125)
Q Consensus 35 ~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~----~G~~~~~~i~~aI~~s~~~Iv 84 (125)
.|.|.+=+-.|.+.|..+|..|.+.+- .. .|..+.+.+.++++.|+++|+
T Consensus 347 dD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv~ 401 (432)
T 3pid_A 347 DNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVIIS 401 (432)
T ss_dssp -----CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEEC
T ss_pred cchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEEE
Confidence 355667778899999999998876543 32 233345678899999998653
No 49
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=31.57 E-value=92 Score=20.69 Aligned_cols=54 Identities=7% Similarity=0.006 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHccCCeeeEE-eCC-CCCCcc---------c-hHHHHHHHHhcceEEEEecCCccCc
Q 044488 39 DNFTSHLYSALCHNNIETFI-DND-LKRGDE---------I-SQSLLDTIEASTISIIIFSERYASS 93 (125)
Q Consensus 39 ~~fv~~L~~~L~~~Gi~vf~-d~~-~~~G~~---------~-~~~i~~aI~~s~~~IvvlS~~~~~S 93 (125)
+..++.+.+.|+..|..+-+ +-. ...... . .....+.+.+++.+ ++.+|.|..+
T Consensus 20 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~i-i~gsP~y~~~ 85 (200)
T 2a5l_A 20 AEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGL-ALGSPTRFGN 85 (200)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEE-EEEEECBTTB
T ss_pred HHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEE-EEEcChhccC
Confidence 45778888888888876532 211 100000 0 00124567777755 4567888754
No 50
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=30.90 E-value=68 Score=23.95 Aligned_cols=58 Identities=9% Similarity=0.019 Sum_probs=34.1
Q ss_pred eEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCc-cchHHHHHHHHhcceEEEE
Q 044488 27 GIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGD-EISQSLLDTIEASTISIII 85 (125)
Q Consensus 27 DVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~-~~~~~i~~aI~~s~~~Ivv 85 (125)
.|.|=|...+-.......+.+.|++.|+++-....+.+|. .+. .+...|..++.=+++
T Consensus 166 ~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~-~~l~~i~~~~~d~v~ 224 (419)
T 3h5l_A 166 KIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWG-PTLAKLRADPPAVIV 224 (419)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCH-HHHHHHHHSCCSEEE
T ss_pred EEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHH-HHHHHHHhcCCCEEE
Confidence 4555554333234677778888889998876544455553 444 455566665543333
No 51
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=30.43 E-value=1.2e+02 Score=23.12 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=27.2
Q ss_pred HHHHHccC-CeeeEEeCCCCCCccchHHHHHHHHhcce-EEEEecCCccC
Q 044488 45 LYSALCHN-NIETFIDNDLKRGDEISQSLLDTIEASTI-SIIIFSERYAS 92 (125)
Q Consensus 45 L~~~L~~~-Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~-~IvvlS~~~~~ 92 (125)
+.++++.. +..+.++ +-|.....+.+.+++....+ .++++|..|..
T Consensus 70 v~ea~~~~p~~DlaVi--~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e 117 (334)
T 3mwd_B 70 MADAMRKHPEVDVLIN--FASLRSAYDSTMETMNYAQIRTIAIIAEGIPE 117 (334)
T ss_dssp HHHHHHHCTTCCEEEE--CCCTTTHHHHHHHHTTSTTCCEEEECCSCCCH
T ss_pred HHHHhhcCCCCcEEEE--ecCHHHHHHHHHHHHHHCCCCEEEEECCCCCH
Confidence 33444443 3555553 24555555677777775544 67777888876
No 52
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=29.19 E-value=52 Score=22.73 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=27.9
Q ss_pred cHHHHHHHHHccCCeeeEEeCCCCCC-ccchHHHHHHHHhcceEEEE
Q 044488 40 NFTSHLYSALCHNNIETFIDNDLKRG-DEISQSLLDTIEASTISIII 85 (125)
Q Consensus 40 ~fv~~L~~~L~~~Gi~vf~d~~~~~G-~~~~~~i~~aI~~s~~~Ivv 85 (125)
.-...|.+.|++.|+.+..-.-+... +.+.+.+.+++++++++|.-
T Consensus 23 tN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVitt 69 (172)
T 3kbq_A 23 TNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSS 69 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEc
Confidence 45567889999999877542212111 34555666666676665543
No 53
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=29.16 E-value=54 Score=25.78 Aligned_cols=33 Identities=0% Similarity=-0.055 Sum_probs=18.4
Q ss_pred EEEeceeccCcccHHHHHHHHHccCCeeeEEeC
Q 044488 28 IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN 60 (125)
Q Consensus 28 VFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~ 60 (125)
|.|=|+..|-...++..|.+++++.|+.+-...
T Consensus 200 V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~ 232 (496)
T 3ks9_A 200 VSAVHTEGNYGESGMDAFKELAAQEGLSIAHSD 232 (496)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEeccHHHHHHHHHHHHHHHHcCceEEEEE
Confidence 333343333334566777777777777654433
No 54
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=28.96 E-value=1e+02 Score=25.54 Aligned_cols=61 Identities=8% Similarity=0.170 Sum_probs=37.9
Q ss_pred eeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCC
Q 044488 25 KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSER 89 (125)
Q Consensus 25 ~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~ 89 (125)
.++|+|---+. .....+..|.+.|+..|++|-+|.+ ++.+...+.+|=..---+++|+.++
T Consensus 539 P~qv~vipi~~-~~~~~a~~v~~~L~~~Gi~v~~D~~---~~~~g~kir~a~~~g~p~~ivvG~~ 599 (642)
T 1qf6_A 539 PVQVVIMNITD-SQSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLVCGDK 599 (642)
T ss_dssp SSCEEEEESSH-HHHHHHHHHHHHHHTTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEEECTT
T ss_pred CceEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEECch
Confidence 37887754332 2356889999999999999999864 3344445545432222245555544
No 55
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=28.66 E-value=40 Score=27.14 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=30.1
Q ss_pred eeeEEEece-e-cc--CcccHHHHHHHHHccCCeeeEEeCC-CCCCcc
Q 044488 25 KHGIFLSFR-G-ED--TRDNFTSHLYSALCHNNIETFIDND-LKRGDE 67 (125)
Q Consensus 25 ~yDVFISys-~-~D--~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~ 67 (125)
.++|+|--- . .+ .....+..|.+.|+..|++|-+|.+ -.+|..
T Consensus 314 P~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~k 361 (501)
T 1nj1_A 314 AHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRK 361 (501)
T ss_dssp SCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHH
T ss_pred CceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHH
Confidence 478877654 3 21 2346888999999999999999865 344443
No 56
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=28.51 E-value=78 Score=20.80 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=39.8
Q ss_pred cCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCccCchhhHHHHHHHHHhhhhCCCEEEEEE
Q 044488 51 HNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVF 118 (125)
Q Consensus 51 ~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~~~~~~~~~~~IiPI~ 118 (125)
...+.||+...-...+.+...+..++++..+-+.+-..+.....--..++..+++..+ .+|.|+
T Consensus 18 ~~~~dvFISy~~~D~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~----~~i~v~ 81 (154)
T 3h16_A 18 APPHDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSR----FGIVVL 81 (154)
T ss_dssp CCSEEEEEEEEGGGTTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEE----EEEEEE
T ss_pred CCCceEEEECcccChHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCc----EEEEEe
Confidence 4568899865422234677888899998776555444444444444567777776443 666665
No 57
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=28.20 E-value=81 Score=25.42 Aligned_cols=61 Identities=7% Similarity=0.145 Sum_probs=37.4
Q ss_pred eeEEEecee-c-cCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCC
Q 044488 26 HGIFLSFRG-E-DTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSER 89 (125)
Q Consensus 26 yDVFISys~-~-D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~ 89 (125)
++|+|---+ + +.....+..|...|++.|+++-+|.+ +..+...+..|-..---+++++.++
T Consensus 471 ~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~---~~~~g~k~~~a~~~g~p~~iivG~~ 533 (572)
T 2j3l_A 471 FDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDR---NERAGVKFADADLIGCPIRITVGKK 533 (572)
T ss_dssp CSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECS---SCCHHHHHHHHHHHCCSEEEEECGG
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCC---CCCHhHHHHHHHhcCCCEEEEEccc
Confidence 788876543 2 22246788899999999999999864 2345545555433222344444443
No 58
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=28.00 E-value=57 Score=20.53 Aligned_cols=44 Identities=14% Similarity=0.355 Sum_probs=30.6
Q ss_pred HHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCccC
Q 044488 47 SALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYAS 92 (125)
Q Consensus 47 ~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~ 92 (125)
-.++..|+..+... ..-+.+.+.+.+.+++-++.|++++.+.++
T Consensus 22 ~GFrLaGi~~~~~~--~~~ee~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 22 IGFMLAGISDIYEV--TSDEEIVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp HHHHHTTCCCEEEC--CSHHHHHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred HHHHHcCCCcccCC--CCHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 34456788776621 223456667777777779999999999886
No 59
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=27.82 E-value=93 Score=22.83 Aligned_cols=53 Identities=6% Similarity=-0.034 Sum_probs=33.1
Q ss_pred eEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCc-cchHHHHHHHHhcc
Q 044488 27 GIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGD-EISQSLLDTIEAST 80 (125)
Q Consensus 27 DVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~-~~~~~i~~aI~~s~ 80 (125)
.|.|-|...+-....+..+.+.|++.|+.+-....+.+|. .+. .+...|..+.
T Consensus 143 ~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~-~~l~~i~~~~ 196 (374)
T 3n0x_A 143 TIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFT-AVGQRLFDAL 196 (374)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCCCCH-HHHHHHHHHH
T ss_pred EEEEEeCCchHHHHHHHHHHHHHHHcCCEEeeeecCCCCCccHH-HHHHHHHhcC
Confidence 5766665433334577888889999998876544455553 444 4555666554
No 60
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=27.81 E-value=24 Score=27.86 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=27.2
Q ss_pred eeeEEEecee-c-cCcccHHHHHHHHHccCCeeeEEeCC
Q 044488 25 KHGIFLSFRG-E-DTRDNFTSHLYSALCHNNIETFIDND 61 (125)
Q Consensus 25 ~yDVFISys~-~-D~~~~fv~~L~~~L~~~Gi~vf~d~~ 61 (125)
.++|+|---+ + +.....+..|+..|+..|++|-+|.+
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~ 403 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDT 403 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECC
Confidence 3788776432 1 22346788999999999999999875
No 61
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=27.78 E-value=83 Score=23.71 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=17.8
Q ss_pred EEEeceeccCccc---HHHHHHHHHccCCeeeE
Q 044488 28 IFLSFRGEDTRDN---FTSHLYSALCHNNIETF 57 (125)
Q Consensus 28 VFISys~~D~~~~---fv~~L~~~L~~~Gi~vf 57 (125)
|.|=|...+..+. ++..|.++|++.|+.+-
T Consensus 157 v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~ 189 (441)
T 1jdp_A 157 AALVYSDDKLERNCYFTLEGVHEVFQEEGLHTS 189 (441)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEE
T ss_pred EEEEEEcCCcccchHHHHHHHHHHHHhcCcEEE
Confidence 5454543333344 66777777777777653
No 62
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=27.68 E-value=92 Score=23.22 Aligned_cols=63 Identities=10% Similarity=0.127 Sum_probs=33.4
Q ss_pred HHHHHHHHHccCC----eeeEEeCCCCCCccchHHHHHHHHh---cceEEEEecCCccC--chhhHHHHHHHHH
Q 044488 41 FTSHLYSALCHNN----IETFIDNDLKRGDEISQSLLDTIEA---STISIIIFSERYAS--SGWCLDELLKILE 105 (125)
Q Consensus 41 fv~~L~~~L~~~G----i~vf~d~~~~~G~~~~~~i~~aI~~---s~~~IvvlS~~~~~--S~wc~~El~~~~~ 105 (125)
.+..|.+.|..+| +.|.+. +.-|.+...+..+.+.+ .+++++.+.|.|.. ..-..+++..++.
T Consensus 63 q~~~L~~~L~~~~~~~~~~V~~a--mry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~~~~i~~~l~ 134 (310)
T 2h1v_A 63 QAHNLEQHLNEIQDEITFKAYIG--LAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAE 134 (310)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEEE--ESSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCceEeeh--hcCCCCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHHHH
Confidence 4556666775443 455443 45565555444444442 34567777877743 2334455554443
No 63
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=27.38 E-value=86 Score=21.49 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=23.4
Q ss_pred EEeceeccC--cccHHHHHHHHHccCCeeeEEe
Q 044488 29 FLSFRGEDT--RDNFTSHLYSALCHNNIETFID 59 (125)
Q Consensus 29 FISys~~D~--~~~fv~~L~~~L~~~Gi~vf~d 59 (125)
||.+-|-|. ...-+..|.+.|+.+|+++..-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 788877664 2357888999999999887653
No 64
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=27.34 E-value=61 Score=26.75 Aligned_cols=58 Identities=10% Similarity=0.166 Sum_probs=36.2
Q ss_pred eeEEEeceeccCcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHH-hcceEEEEec
Q 044488 26 HGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIE-ASTISIIIFS 87 (125)
Q Consensus 26 yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~-~s~~~IvvlS 87 (125)
++|+|---+.+.....+..|.+.|++.|++|.+|.+ ++.+...+.+|-. .... ++|+.
T Consensus 546 ~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~---~~~~g~k~~~a~~~g~p~-~iivG 604 (645)
T 1nyr_A 546 KQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDR---NEKMGYKIREAQMQKIPY-QIVVG 604 (645)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCS---SCCHHHHHHHHHHHTCSE-EEEEC
T ss_pred ceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECC---CCCHHHHHHHHHhcCCCE-EEEEc
Confidence 688775433123346888999999999999999864 3345545545432 3333 44443
No 65
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=27.31 E-value=68 Score=25.76 Aligned_cols=61 Identities=8% Similarity=-0.004 Sum_probs=38.4
Q ss_pred eeeEEEeceec-c-CcccHHHHHHHHHccCC-eeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCC
Q 044488 25 KHGIFLSFRGE-D-TRDNFTSHLYSALCHNN-IETFIDNDLKRGDEISQSLLDTIEASTISIIIFSER 89 (125)
Q Consensus 25 ~yDVFISys~~-D-~~~~fv~~L~~~L~~~G-i~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~ 89 (125)
.++|+|---++ + .....+..|...|+..| ++|.+|.. ..+...+.+|=..---+++++.++
T Consensus 398 P~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~~----~sig~k~~~ad~~g~p~~iivG~~ 461 (505)
T 1ati_A 398 PIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDT----GNIGKAYRRHDEVGTPFAVTVDYD 461 (505)
T ss_dssp SCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCC----SCHHHHHHHHHHTTCSEEEEECHH
T ss_pred CceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECCC----CCHHHHHHHHHHCCCCEEEEEChH
Confidence 37888765433 1 23467889999999999 99998763 355555555443323344455443
No 66
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=27.24 E-value=76 Score=24.32 Aligned_cols=58 Identities=12% Similarity=0.289 Sum_probs=36.7
Q ss_pred CeeeEEEeceeccCcccHHHHHHHHHccC--CeeeEEeCCCCCCccchHHHHHHHH-hcceEEEE
Q 044488 24 NKHGIFLSFRGEDTRDNFTSHLYSALCHN--NIETFIDNDLKRGDEISQSLLDTIE-ASTISIII 85 (125)
Q Consensus 24 ~~yDVFISys~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~~~~G~~~~~~i~~aI~-~s~~~Ivv 85 (125)
..+||+|-.-+++ ....+..|...|++. |++|-+|.. +..+...+..|-. .+...|+|
T Consensus 326 ~p~~v~i~~~~~~-~~~~a~~l~~~Lr~~~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p~~iii 386 (423)
T 1htt_A 326 PVVDIYLVASGAD-TQSAAMALAERLRDELPGVKLMTNHG---GGNFKKQFARADKWGARVAVVL 386 (423)
T ss_dssp CSCSEEEEECSTT-HHHHHHHHHHHHHHHSTTCCEEECCS---CCCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCcEEEEEcCHH-HHHHHHHHHHHHHcCCCCcEEEEeCC---CCCHHHHHHHHHHcCCCEEEEE
Confidence 3478988775443 246778899999998 999988753 2344444544433 34444433
No 67
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=26.79 E-value=99 Score=26.04 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=37.4
Q ss_pred eeEEEeceecc-CcccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecC
Q 044488 26 HGIFLSFRGED-TRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSE 88 (125)
Q Consensus 26 yDVFISys~~D-~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~ 88 (125)
++|+|---+++ .....+..|...|+..|++|.+|.. +..+...+.++=..---+++++.+
T Consensus 560 ~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~---~~sigkk~k~Ad~~G~p~~IiIG~ 620 (693)
T 2zt5_A 560 FKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDS---SGSIGRRYARTDEIGVAFGVTIDF 620 (693)
T ss_dssp CSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCC---CSCHHHHHHHHHHTTCCEEEEECH
T ss_pred CeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEEcc
Confidence 78887654432 2356889999999999999999863 234444554443322224444443
No 68
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=26.70 E-value=72 Score=25.19 Aligned_cols=52 Identities=13% Similarity=0.320 Sum_probs=36.2
Q ss_pred ccCcccHHHHHHHHHccC-CeeeEEeCC-CCCCccchHHHHHHHHhcceEEEEec
Q 044488 35 EDTRDNFTSHLYSALCHN-NIETFIDND-LKRGDEISQSLLDTIEASTISIIIFS 87 (125)
Q Consensus 35 ~D~~~~fv~~L~~~L~~~-Gi~vf~d~~-~~~G~~~~~~i~~aI~~s~~~IvvlS 87 (125)
.|.|.+=+-.|.+.|.++ |..|...+- .... .....+.++++.++.+|+...
T Consensus 330 dD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~ad~vvi~t~ 383 (431)
T 3ojo_A 330 DDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-FVEHDMSHAVKDASLVLILSD 383 (431)
T ss_dssp CCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-TBCSTTHHHHTTCSEEEECSC
T ss_pred cchhcChHHHHHHHHHhhcCCEEEEECCCcccc-cccCCHHHHHhCCCEEEEecC
Confidence 466777788899999988 998877553 3322 233456788899988766554
No 69
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=26.69 E-value=1.5e+02 Score=20.17 Aligned_cols=35 Identities=11% Similarity=-0.065 Sum_probs=15.8
Q ss_pred HHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHH
Q 044488 43 SHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIE 77 (125)
Q Consensus 43 ~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~ 77 (125)
..|.++++..--.+++---+...+.+.+.+.+|.+
T Consensus 49 ~~ll~~I~~A~~sI~i~~y~~~~~~i~~aL~~aa~ 83 (196)
T 4ggj_A 49 SRLLRALLAARSSLELCLFAFSSPQLGRAVQLLHQ 83 (196)
T ss_dssp HHHHHHHHTCSSEEEEEESCBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhheEEEEEEEEeCCHHHHHHHHHHHH
Confidence 45566665443333332222334445555555443
No 70
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=26.51 E-value=51 Score=22.43 Aligned_cols=54 Identities=11% Similarity=0.031 Sum_probs=30.6
Q ss_pred ccHHHHHHHHHccCCeeeEE-eCC-CCCCc----------------cchHHHHHHHHhcceEEEEecCCccCc
Q 044488 39 DNFTSHLYSALCHNNIETFI-DND-LKRGD----------------EISQSLLDTIEASTISIIIFSERYASS 93 (125)
Q Consensus 39 ~~fv~~L~~~L~~~Gi~vf~-d~~-~~~G~----------------~~~~~i~~aI~~s~~~IvvlS~~~~~S 93 (125)
...++.+.+.|+..|..+-+ |-. ..+.. .+...+.+.+.+++. |++.||.|..+
T Consensus 21 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~-ii~gsP~y~~~ 92 (211)
T 1ydg_A 21 YAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEA-IVFSSPTRFGG 92 (211)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSE-EEEEEEEETTE
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCE-EEEEcCccccC
Confidence 46778888888888876532 211 11000 111234566777885 45568888754
No 71
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=25.83 E-value=1.5e+02 Score=21.29 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=10.2
Q ss_pred ccchHHHHHHHHhcceEEEE
Q 044488 66 DEISQSLLDTIEASTISIII 85 (125)
Q Consensus 66 ~~~~~~i~~aI~~s~~~Ivv 85 (125)
+.+.+.+.+.|++++.-|.+
T Consensus 9 e~Ii~r~~e~I~~A~~el~l 28 (233)
T 2f5t_X 9 DEAIEMFRESLYSAKNEVIV 28 (233)
T ss_dssp HHHHHHHHHHHHTCSSEEEE
T ss_pred HHHHHHHHHHHHHhhhEEEE
Confidence 34445555555555554433
No 72
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=25.80 E-value=31 Score=22.93 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=16.0
Q ss_pred ccHHHHHHHHHccCCeee
Q 044488 39 DNFTSHLYSALCHNNIET 56 (125)
Q Consensus 39 ~~fv~~L~~~L~~~Gi~v 56 (125)
..|+..|...|.++|++|
T Consensus 8 ~~fi~~Lk~~LK~rGvkV 25 (124)
T 2lpy_A 8 ERYVEQLKQALKTRGVKV 25 (124)
T ss_dssp HHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHCCeee
Confidence 469999999999999976
No 73
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=25.08 E-value=67 Score=21.69 Aligned_cols=45 Identities=9% Similarity=0.169 Sum_probs=26.2
Q ss_pred cHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHH-hcceEEE
Q 044488 40 NFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIE-ASTISII 84 (125)
Q Consensus 40 ~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~-~s~~~Iv 84 (125)
.-...|.+.|++.|+.+..-.-+...+.+.+.+.++++ +++++|.
T Consensus 27 sn~~~l~~~l~~~G~~v~~~~iv~Dd~~i~~al~~a~~~~~DlVit 72 (164)
T 3pzy_A 27 RCGPIITEWLAQQGFSSAQPEVVADGSPVGEALRKAIDDDVDVILT 72 (164)
T ss_dssp CHHHHHHHHHHHTTCEECCCEEECSSHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 45567889999999876432112211445556666664 5665444
No 74
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=24.70 E-value=50 Score=20.88 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=24.1
Q ss_pred eEEEeceeccCcccHHHHHHHHHccCCeeeEEeCC
Q 044488 27 GIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND 61 (125)
Q Consensus 27 DVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~ 61 (125)
+.--=|+..|. ..+..+...|+..||.+|+-+.
T Consensus 22 ~M~eL~ra~d~--v~a~~~k~LLe~aGI~~fv~De 54 (97)
T 2hfv_A 22 HLRELLRTNDA--VLLSAVGALLDGADIGHLVLDQ 54 (97)
T ss_dssp SEEEEEEECCH--HHHHHHHHHHHHTTCCEECCSC
T ss_pred cceeeeecCCH--HHHHHHHHHHHhCCCCEEEcCC
Confidence 44444566664 4667788889999999999665
No 75
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=24.52 E-value=1.5e+02 Score=19.37 Aligned_cols=27 Identities=4% Similarity=0.145 Sum_probs=19.2
Q ss_pred CC-ccchHHHHHHHHhcceEEEEecCCc
Q 044488 64 RG-DEISQSLLDTIEASTISIIIFSERY 90 (125)
Q Consensus 64 ~G-~~~~~~i~~aI~~s~~~IvvlS~~~ 90 (125)
+| +.+.......+..++.+|+|++..-
T Consensus 85 ~G~~~~~~~~~~~~~~~d~iilv~d~~~ 112 (199)
T 2p5s_A 85 AGQERFRSIAKSYFRKADGVLLLYDVTC 112 (199)
T ss_dssp TTCTTCHHHHHHHHHHCSEEEEEEETTC
T ss_pred CCCcchhhhHHHHHhhCCEEEEEEECCC
Confidence 44 3445555667889999999998653
No 76
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=24.31 E-value=2.2e+02 Score=21.01 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=25.5
Q ss_pred HHHHHHHHh-----cceEEEEecC--CccCchhhHHHHHHHHHhhh
Q 044488 70 QSLLDTIEA-----STISIIIFSE--RYASSGWCLDELLKILECKH 108 (125)
Q Consensus 70 ~~i~~aI~~-----s~~~IvvlS~--~~~~S~wc~~El~~~~~~~~ 108 (125)
+.+.+++.. .+.++++-+| |-....|..+|+..+.+..+
T Consensus 164 ~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~ 209 (413)
T 3t18_A 164 DVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEVITFLK 209 (413)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 567777764 3336666677 33456677888888777544
No 77
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=24.08 E-value=29 Score=22.77 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=41.5
Q ss_pred HHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCccCchh-hHHHHHHHHHhh
Q 044488 41 FTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGW-CLDELLKILECK 107 (125)
Q Consensus 41 fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~w-c~~El~~~~~~~ 107 (125)
-...|..+.+.+|+-+|.|.+ .+|+.+...|.+.+..+. ...+.+.+..=.- ..++|..++...
T Consensus 40 ~l~~I~~~~~~r~VIi~TD~D-~~GekIRk~i~~~lp~~~--hafi~r~~~gVE~a~~~~I~~aL~~~ 104 (119)
T 2fcj_A 40 RLEELADELEGYDVYLLADAD-EAGEKLRRQFRRMFPEAE--HLYIDRAYREVAAAPIWHLAQVLLRA 104 (119)
T ss_dssp HHHHHHHHTTTSEEEEECCSS-HHHHHHHHHHHHHCTTSE--EECCCTTTCSTTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEEECCC-ccHHHHHHHHHHHCCCCc--EEeccCCccCcccCCHHHHHHHHHhc
Confidence 345677777788999998876 578888888888887775 3344555542111 134666666543
No 78
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=24.08 E-value=21 Score=21.61 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=22.5
Q ss_pred HHHhcceEEEEecCCccCchhhHHHHHHHHHhh
Q 044488 75 TIEASTISIIIFSERYASSGWCLDELLKILECK 107 (125)
Q Consensus 75 aI~~s~~~IvvlS~~~~~S~wc~~El~~~~~~~ 107 (125)
.+.++++.++|+|++---..||-..+..++++.
T Consensus 36 vLCdaeV~livfs~~gk~~~~~s~~~~~il~ry 68 (77)
T 1egw_A 36 VLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (77)
T ss_dssp HHTTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred cccCCeEEEEEECCCCCEeeCCCCCHHHHHHHH
Confidence 457899999999998655555544555555543
No 79
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=24.04 E-value=2e+02 Score=20.63 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=21.4
Q ss_pred cHHHHHHHHHccCCeeeEEeCCCCCCc-cchHHHHHHHHhcc
Q 044488 40 NFTSHLYSALCHNNIETFIDNDLKRGD-EISQSLLDTIEAST 80 (125)
Q Consensus 40 ~fv~~L~~~L~~~Gi~vf~d~~~~~G~-~~~~~i~~aI~~s~ 80 (125)
.....+.++|++.|+.+-....+..|. .+. ...+.+.+++
T Consensus 166 ~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~-~~~~~l~~~~ 206 (375)
T 4evq_A 166 EMVSGFKKSFTAGKGEVVKDITIAFPDVEFQ-SALAEIASLK 206 (375)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECTTCCCCH-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCeEEEEEecCCCCccHH-HHHHHHHhcC
Confidence 345667778888888764332233343 333 3444455444
No 80
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=23.79 E-value=1.6e+02 Score=19.24 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCccC
Q 044488 39 DNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYAS 92 (125)
Q Consensus 39 ~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~ 92 (125)
+..++.|.+.|+..|+.+-+-+ + .+.-.+.+...+.+++. |++.||.|..
T Consensus 15 ~~~A~~ia~~l~~~g~~v~~~~-~--~~~~~~~~~~~~~~~d~-ii~Gspty~g 64 (161)
T 3hly_A 15 DRLSQAIGRGLVKTGVAVEMVD-L--RAVDPQELIEAVSSARG-IVLGTPPSQP 64 (161)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEE-T--TTCCHHHHHHHHHHCSE-EEEECCBSSC
T ss_pred HHHHHHHHHHHHhCCCeEEEEE-C--CCCCHHHHHHHHHhCCE-EEEEcCCcCC
Confidence 4688999999998898653311 1 12222345555667775 5667888864
No 81
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=23.62 E-value=72 Score=25.23 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=40.4
Q ss_pred ccCcccHHHHHHHHHccCCeeeEEeCC-CC-------CCccchHHHHHHHHhcceEEEEecC-CccCchh
Q 044488 35 EDTRDNFTSHLYSALCHNNIETFIDND-LK-------RGDEISQSLLDTIEASTISIIIFSE-RYASSGW 95 (125)
Q Consensus 35 ~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~-------~G~~~~~~i~~aI~~s~~~IvvlS~-~~~~S~w 95 (125)
.|.|.+=+-.|.+.|..+|..|...+- .. ++-.+.+...++++.++.+|++..- .|.+-+|
T Consensus 337 dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~ 406 (446)
T 4a7p_A 337 DDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTEWDAFRALDL 406 (446)
T ss_dssp CCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSCCTTTTSCCH
T ss_pred cccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeCCHHhhcCCH
Confidence 456667778899999999998876542 21 2434445677899999987665443 3444344
No 82
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=23.54 E-value=1.1e+02 Score=22.46 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=15.9
Q ss_pred HHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcc
Q 044488 41 FTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEAST 80 (125)
Q Consensus 41 fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~ 80 (125)
++..+.+.+++.|+.+-... +..|..-...+...|..++
T Consensus 153 ~~~~~~~~~~~~g~~v~~~~-~~~~~~d~~~~l~~i~~~~ 191 (395)
T 3h6g_A 153 RLQELIKAPSRYNLRLKIRQ-LPADTKDAKPLLKEMKRGK 191 (395)
T ss_dssp HTHHHHTGGGTSSCEEEEEE-CCSSGGGGHHHHHHHHHTT
T ss_pred HHHHHHHhhhcCCceEEEEE-eCCCchhHHHHHHHHhhcC
Confidence 33444444455555443322 3334222223444444433
No 83
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=23.30 E-value=1.1e+02 Score=23.37 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=36.4
Q ss_pred ece--eccCcccHHHHHHHHHccCCeeeEEeCC-CCCCc-----cchHHHHHHHHhcceEEE
Q 044488 31 SFR--GEDTRDNFTSHLYSALCHNNIETFIDND-LKRGD-----EISQSLLDTIEASTISII 84 (125)
Q Consensus 31 Sys--~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~-----~~~~~i~~aI~~s~~~Iv 84 (125)
+|. ..|.|.+=+-.|.+.|.++|..|.+.+- +.... .+.+...++++.++.+|+
T Consensus 318 afK~~~~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 379 (402)
T 1dlj_A 318 IMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVT 379 (402)
T ss_dssp CSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEEC
T ss_pred eccCCCcccccChHHHHHHHHHHCCCEEEEECCCCChHHHHcCCeecCCHHHHHhCCcEEEE
Confidence 563 3466777788899999999988876543 43321 122356778888988876
No 84
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=22.90 E-value=1.5e+02 Score=20.74 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=21.9
Q ss_pred eeEEEeceeccCc--ccHHHHHHHHHccCCeeeEE
Q 044488 26 HGIFLSFRGEDTR--DNFTSHLYSALCHNNIETFI 58 (125)
Q Consensus 26 yDVFISys~~D~~--~~fv~~L~~~L~~~Gi~vf~ 58 (125)
.-||+.|-..|.- ...+..+.+.|++.|.++-+
T Consensus 184 ~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~ 218 (246)
T 4f21_A 184 LPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEY 218 (246)
T ss_dssp CCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEE
T ss_pred CchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEE
Confidence 4588888666642 24556777888888876643
No 85
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=22.74 E-value=1.3e+02 Score=21.40 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=22.8
Q ss_pred hHHHHHHHHhc-------ceEEEEecCCccCchhhHHHHHHHHHhhhh
Q 044488 69 SQSLLDTIEAS-------TISIIIFSERYASSGWCLDELLKILECKHD 109 (125)
Q Consensus 69 ~~~i~~aI~~s-------~~~IvvlS~~~~~S~wc~~El~~~~~~~~~ 109 (125)
.+.+.++++.. ..+|++..++-...-+..+++..+.+..++
T Consensus 128 ~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~~~~~~l~~i~~~~~~ 175 (359)
T 1svv_A 128 VADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKE 175 (359)
T ss_dssp HHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCCCCceecCHHHHHHHHHHHHH
Confidence 35777788765 345555566433344444566666554443
No 86
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=22.52 E-value=1.3e+02 Score=20.10 Aligned_cols=45 Identities=9% Similarity=-0.039 Sum_probs=26.0
Q ss_pred cHHHHHHHHHccCCeeeEEeCCCCCC-ccchHHHHHHHH--hcceEEE
Q 044488 40 NFTSHLYSALCHNNIETFIDNDLKRG-DEISQSLLDTIE--ASTISII 84 (125)
Q Consensus 40 ~fv~~L~~~L~~~Gi~vf~d~~~~~G-~~~~~~i~~aI~--~s~~~Iv 84 (125)
.-...|.+.|++.|+.+..-.-+... +.+.+.+.++++ +++++|.
T Consensus 21 ~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVit 68 (164)
T 2is8_A 21 TTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILT 68 (164)
T ss_dssp CHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred chHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 45567899999999876542212111 245566666666 4554433
No 87
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=22.40 E-value=1.7e+02 Score=19.11 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=22.9
Q ss_pred ceEEEEecCCccCchhhHHHHHH---HHHhhhhCCCEEEEEEeecCCC
Q 044488 80 TISIIIFSERYASSGWCLDELLK---ILECKHDYGQIVIPVFCRVDPS 124 (125)
Q Consensus 80 ~~~IvvlS~~~~~S~wc~~El~~---~~~~~~~~~~~IiPI~~~v~ps 124 (125)
+++|+-|--.+.. .||..++.. +.+..++.+..|..|++-++|.
T Consensus 33 k~vll~F~~t~Cp-~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 33 KVWVADFMFTNCQ-TVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp SCEEEEEECTTCS-SSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CEEEEEEECCCCC-CcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 5555555333322 377655544 3333333455566777777764
No 88
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=22.11 E-value=1.8e+02 Score=19.41 Aligned_cols=48 Identities=8% Similarity=0.025 Sum_probs=29.7
Q ss_pred ccHHHHHHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCccCc
Q 044488 39 DNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASS 93 (125)
Q Consensus 39 ~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S 93 (125)
+..++.+.+.|+..++.+-. . +.+.+.+.+.+.+++.+|+. ||.|..+
T Consensus 21 ~~lA~~ia~~l~~~~~~v~~---~---~~~~~~~~~~l~~~D~ii~g-sP~y~g~ 68 (193)
T 3d7n_A 21 HRMAEAVAEGAEATLHAIDA---E---GNLSEDGWAALDAADAIIFG-TPTYMGG 68 (193)
T ss_dssp HHHHHHHHHHHTCEEEECCT---T---SCCCHHHHHHHHHCSEEEEE-EEEETTE
T ss_pred HHHHHHHHHHhhhcceEeee---c---CCCCHhHHHHHHHCCEEEEE-eCccCCC
Confidence 35777888888776654421 1 12333455678888876554 8888754
No 89
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=21.86 E-value=28 Score=21.73 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=21.9
Q ss_pred HHHhcceEEEEecCCccCchhhHHHHHHHHHh
Q 044488 75 TIEASTISIIIFSERYASSGWCLDELLKILEC 106 (125)
Q Consensus 75 aI~~s~~~IvvlS~~~~~S~wc~~El~~~~~~ 106 (125)
.+.++++.++|+|++=--..||-..+..++++
T Consensus 36 vLCda~Valiifs~~gk~~~f~s~~~~~il~r 67 (90)
T 3p57_A 36 VLCDCEIALIIFNSSNKLFQYASTDMDKVLLK 67 (90)
T ss_dssp HHHTCEEEEEEECTTCCEEEEESSCHHHHHHH
T ss_pred hccCCceEEEEECCCCCEEEeCCCCHHHHHHH
Confidence 46789999999999855555554445555543
No 90
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=21.56 E-value=2.1e+02 Score=19.91 Aligned_cols=66 Identities=9% Similarity=0.139 Sum_probs=32.0
Q ss_pred HHHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCcc----CchhhHHHHHHHHHhhhhCCCEEE
Q 044488 45 LYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYA----SSGWCLDELLKILECKHDYGQIVI 115 (125)
Q Consensus 45 L~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~----~S~wc~~El~~~~~~~~~~~~~Ii 115 (125)
....|++.|+++.+|+ +-.|.. -...+..-..-.+-+.+.++ .++....=+..+.+..+..+..+|
T Consensus 144 ~l~~l~~~G~~ialDd-fG~g~s----sl~~L~~l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~vi 213 (259)
T 3s83_A 144 ILKTLRDAGAGLALDD-FGTGFS----SLSYLTRLPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVV 213 (259)
T ss_dssp HHHHHHHHTCEEEEEC-C---CH----HHHHHHHSCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHCCCEEEEEC-CCCCch----hHHHHHhCCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeEE
Confidence 3455666677777765 333321 22345555666666666654 233332233444454454454443
No 91
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=21.45 E-value=1.6e+02 Score=22.13 Aligned_cols=95 Identities=11% Similarity=0.186 Sum_probs=53.7
Q ss_pred eEEEeceeccC--cccHHHHHHHHHccCCeeeEEeCCCCCC-----ccchHHHHHHHHhcceEEEEecCCccCch-----
Q 044488 27 GIFLSFRGEDT--RDNFTSHLYSALCHNNIETFIDNDLKRG-----DEISQSLLDTIEASTISIIIFSERYASSG----- 94 (125)
Q Consensus 27 DVFISys~~D~--~~~fv~~L~~~L~~~Gi~vf~d~~~~~G-----~~~~~~i~~aI~~s~~~IvvlS~~~~~S~----- 94 (125)
-|||-+-|-|. .-+-+.+|...|..+|++|..-. .|| ..+...+..++- .+--|+|+.+.+-++.
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~--~Pt~eE~~~~yl~R~~~~LP-~~G~IvIfDRswYs~v~~~rv 162 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT--KPTETERGQWYFQRYVATFP-TAGEFVLFDRSWYNRAGVEPV 162 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC--SCCHHHHTSCTTHHHHTTCC-CTTCEEEEEECGGGGTTHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC--CcChHHHhchHHHHHHHhcc-cCCeEEEEECCcchHHHHHHH
Confidence 58999988775 23677889999999999876532 233 333334444442 2344566665553322
Q ss_pred --hhH-HHH----HHHHH--hh-hhCCCEEEEEEeecCCC
Q 044488 95 --WCL-DEL----LKILE--CK-HDYGQIVIPVFCRVDPS 124 (125)
Q Consensus 95 --wc~-~El----~~~~~--~~-~~~~~~IiPI~~~v~ps 124 (125)
.|- .|. ..+.+ .. -..+..++=+|++|++.
T Consensus 163 ~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~e 202 (304)
T 3czq_A 163 MGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGRE 202 (304)
T ss_dssp HTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHH
Confidence 121 122 22211 11 22457888888898864
No 92
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=21.36 E-value=1.1e+02 Score=22.23 Aligned_cols=63 Identities=17% Similarity=0.280 Sum_probs=31.9
Q ss_pred HHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCccCchhhHHHHHHHHHhhhhCC
Q 044488 48 ALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHDYG 111 (125)
Q Consensus 48 ~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~~~~~~~~~ 111 (125)
.+...|.-=++|-++..++.+..++.+......+-| |+|-+-++..|-.+||...+..+.+.+
T Consensus 107 ~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~ki-I~S~Hdf~~TP~~~el~~~~~~~~~~g 169 (258)
T 4h3d_A 107 EISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKV-IISNHDFNKTPKKEEIVSRLCRMQELG 169 (258)
T ss_dssp HHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEE-EEEEEESSCCCCHHHHHHHHHHHHHTT
T ss_pred HHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEE-EEEEecCCCCCCHHHHHHHHHHHHHhC
Confidence 333344333566554444444445555444444444 445544444555677777666555444
No 93
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=21.34 E-value=2.8e+02 Score=22.83 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=48.7
Q ss_pred eEEEeceeccCcccHHHHH-HHHHccCCeeeEEeCCCCCCccchHHHHHHHHhcceEEEEecCCccCchhhHHHHHHHHH
Q 044488 27 GIFLSFRGEDTRDNFTSHL-YSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILE 105 (125)
Q Consensus 27 DVFISys~~D~~~~fv~~L-~~~L~~~Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~~~ 105 (125)
-|-+.--..|. +.+-..+ ...|+.+|+.|.. +-..-+ .+++.+++.+.+.-+|.+|-....+ +.++...++
T Consensus 100 kVLlatv~GD~-HdiG~~iva~~L~~~G~eVi~---LG~~vP-~e~iv~aa~~~~~diVgLS~l~t~~---~~~m~~~i~ 171 (579)
T 3bul_A 100 KMVIATVKGDV-HDIGKNIVGVVLQCNNYEIVD---LGVMVP-AEKILRTAKEVNADLIGLSGLITPS---LDEMVNVAK 171 (579)
T ss_dssp EEEEEEBTTCC-CCHHHHHHHHHHHTTTCEEEE---CCSSBC-HHHHHHHHHHHTCSEEEEECCSTHH---HHHHHHHHH
T ss_pred eEEEEECCCCC-chHHHHHHHHHHHHCCCEEEE---CCCCCC-HHHHHHHHHHcCCCEEEEEecCCCC---HHHHHHHHH
Confidence 35554434443 5565554 4467899999854 212222 2467778887787777777755443 444544444
Q ss_pred hhhhCCCEEEEEEeec
Q 044488 106 CKHDYGQIVIPVFCRV 121 (125)
Q Consensus 106 ~~~~~~~~IiPI~~~v 121 (125)
..++.+.. +||+++.
T Consensus 172 ~Lr~~g~~-i~ViVGG 186 (579)
T 3bul_A 172 EMERQGFT-IPLLIGG 186 (579)
T ss_dssp HHHHTTCC-SCEEEES
T ss_pred HHHHcCCC-CeEEEEc
Confidence 33333332 7777754
No 94
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=21.27 E-value=1.5e+02 Score=18.25 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=23.9
Q ss_pred HHHHHHHhcceEEEEecCCccCchhhHHHHHHHH
Q 044488 71 SLLDTIEASTISIIIFSERYASSGWCLDELLKIL 104 (125)
Q Consensus 71 ~i~~aI~~s~~~IvvlS~~~~~S~wc~~El~~~~ 104 (125)
+..++|+.-+.-++|+..|. ++....++....
T Consensus 29 ~v~kai~~gkaklVilA~D~--~~~~~~~i~~~c 60 (105)
T 3u5e_c 29 STVKSLRQGKSKLIIIAANT--PVLRKSELEYYA 60 (105)
T ss_dssp HHHHHHHTTCCSEEEECTTS--CHHHHHHHHHHH
T ss_pred HHHHHHHcCCceEEEEeCCC--CHHHHHHHHHHH
Confidence 67788998888889998888 455666665543
No 95
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=21.15 E-value=1.6e+02 Score=18.41 Aligned_cols=29 Identities=7% Similarity=0.154 Sum_probs=20.3
Q ss_pred CC-ccchHHHHHHHHhcceEEEEecCCccC
Q 044488 64 RG-DEISQSLLDTIEASTISIIIFSERYAS 92 (125)
Q Consensus 64 ~G-~~~~~~i~~aI~~s~~~IvvlS~~~~~ 92 (125)
+| +.+.......++.++.+|+|++..-..
T Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 101 (179)
T 1z0f_A 72 AGQERFRAVTRSYYRGAAGALMVYDITRRS 101 (179)
T ss_dssp TTGGGTCHHHHHHHHTCSEEEEEEETTCHH
T ss_pred CCChHhhhhHHHHhccCCEEEEEEeCcCHH
Confidence 44 344455666788999999999876543
No 96
>4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans}
Probab=20.90 E-value=1.8e+02 Score=19.66 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=25.0
Q ss_pred eeeEEEeceeccCc--ccHHHHHHHHHccCCeeeEE
Q 044488 25 KHGIFLSFRGEDTR--DNFTSHLYSALCHNNIETFI 58 (125)
Q Consensus 25 ~yDVFISys~~D~~--~~fv~~L~~~L~~~Gi~vf~ 58 (125)
..-||+.|-..|.. ......+.+.|++.|.++-+
T Consensus 151 ~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~ 186 (210)
T 4h0c_A 151 QTPVFISTGNPDPHVPVSRVQESVTILEDMNAAVSQ 186 (210)
T ss_dssp TCEEEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEecCCCCccCHHHHHHHHHHHHHCCCCeEE
Confidence 34699999888853 24567788899999987643
No 97
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=20.86 E-value=2.6e+02 Score=20.61 Aligned_cols=39 Identities=8% Similarity=0.108 Sum_probs=24.6
Q ss_pred HHHHHHHHh-----cceEEEEecC--CccCchhhHHHHHHHHHhhh
Q 044488 70 QSLLDTIEA-----STISIIIFSE--RYASSGWCLDELLKILECKH 108 (125)
Q Consensus 70 ~~i~~aI~~-----s~~~IvvlS~--~~~~S~wc~~El~~~~~~~~ 108 (125)
+.+.+++.. .+.++++-+| |-....+-.+|+..+.+..+
T Consensus 165 ~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~ 210 (418)
T 3rq1_A 165 EAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLK 210 (418)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 567777764 3346666667 44455667778877777544
No 98
>3czx_A Putative N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI, MCSG, protein structure initiative; 1.60A {Neisseria meningitidis MC58}
Probab=20.69 E-value=1.4e+02 Score=20.35 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=27.8
Q ss_pred ccHHHHHHHHHccC-CeeeEEeCCCCCCccchHHHHHHHHhcceEEEE
Q 044488 39 DNFTSHLYSALCHN-NIETFIDNDLKRGDEISQSLLDTIEASTISIII 85 (125)
Q Consensus 39 ~~fv~~L~~~L~~~-Gi~vf~d~~~~~G~~~~~~i~~aI~~s~~~Ivv 85 (125)
..++..|.+.|++. |++|.+-++-.....+.+....+ ..++++|=|
T Consensus 31 l~ia~~l~~~L~~~~G~~V~~tR~~d~~~~L~~R~~~a-n~adlfISI 77 (182)
T 3czx_A 31 QDMRNIVASILRNDYGLTVKTDGTGKGNMPLRDAVKLI-RGSDVAIEF 77 (182)
T ss_dssp HHHHHHHHHHHHHHHCCCEEESCSSCCCCCHHHHHHHH-HTCSEEEEE
T ss_pred HHHHHHHHHHHhhcCCcEEEEecCCCccCCHHHHHHHh-hCCCEEEEe
Confidence 35778899999999 99998854311112333333333 367776655
No 99
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=20.66 E-value=1.3e+02 Score=22.35 Aligned_cols=58 Identities=9% Similarity=-0.032 Sum_probs=36.1
Q ss_pred eEEEeceeccCcccHHHHHHHHHccCCe-ee-EEeCCCCCCccchHHHHHHHHhcceEEEEe
Q 044488 27 GIFLSFRGEDTRDNFTSHLYSALCHNNI-ET-FIDNDLKRGDEISQSLLDTIEASTISIIIF 86 (125)
Q Consensus 27 DVFISys~~D~~~~fv~~L~~~L~~~Gi-~v-f~d~~~~~G~~~~~~i~~aI~~s~~~Ivvl 86 (125)
=+||-+.+.|. ...+....++|++.|+ .+ .++-. ...+.-.+.+.+.|++++.+.+-=
T Consensus 59 I~~IptAs~~~-~~~~~~~~~~f~~lG~~~v~~L~i~-~r~~a~~~~~~~~l~~ad~I~v~G 118 (291)
T 3en0_A 59 IGIIPSASREP-LLIGERYQTIFSDMGVKELKVLDIR-DRAQGDDSGYRLFVEQCTGIFMTG 118 (291)
T ss_dssp EEEECTTCSSH-HHHHHHHHHHHHHHCCSEEEECCCC-SGGGGGCHHHHHHHHHCSEEEECC
T ss_pred EEEEeCCCCCh-HHHHHHHHHHHHHcCCCeeEEEEec-CccccCCHHHHHHHhcCCEEEECC
Confidence 35888877664 3566777888888887 44 23221 112233457788899888776543
No 100
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=20.58 E-value=1.3e+02 Score=21.72 Aligned_cols=17 Identities=18% Similarity=0.081 Sum_probs=10.1
Q ss_pred cHHHHHHHHHccCCeee
Q 044488 40 NFTSHLYSALCHNNIET 56 (125)
Q Consensus 40 ~fv~~L~~~L~~~Gi~v 56 (125)
.....+.++|++.|+.+
T Consensus 174 ~~~~~~~~~l~~~g~~v 190 (386)
T 3sg0_A 174 GYYKVLAAAAPKLGFEL 190 (386)
T ss_dssp HHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHcCCEE
Confidence 34455666666667655
No 101
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=20.53 E-value=1.9e+02 Score=18.94 Aligned_cols=46 Identities=17% Similarity=0.429 Sum_probs=23.8
Q ss_pred ccchHHHHHHHH---hcceEEEEecCCccCchhhHHHHHHHHHhhhhCCCEEEEEE
Q 044488 66 DEISQSLLDTIE---ASTISIIIFSERYASSGWCLDELLKILECKHDYGQIVIPVF 118 (125)
Q Consensus 66 ~~~~~~i~~aI~---~s~~~IvvlS~~~~~S~wc~~El~~~~~~~~~~~~~IiPI~ 118 (125)
+.+..+|.+-.+ +-++++++-+.+ ..|..+ +++.+++++--++-|+
T Consensus 62 edfrenireiwerypqldvvvivttdd---kewikd----fieeakergvevfvvy 110 (162)
T 2l82_A 62 EDFRENIREIWERYPQLDVVVIVTTDD---KEWIKD----FIEEAKERGVEVFVVY 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEECCC---HHHHHH----HHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEecCc---HHHHHH----HHHHHHhcCcEEEEEe
Confidence 345555554444 566666666553 345543 3333445566666554
No 102
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=20.51 E-value=2.6e+02 Score=20.65 Aligned_cols=34 Identities=9% Similarity=0.003 Sum_probs=21.7
Q ss_pred eeeEEEeceeccCcccHHHHHHHHHccCCeeeEEeC
Q 044488 25 KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN 60 (125)
Q Consensus 25 ~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~ 60 (125)
++=++++-.+... ..+..+.+.|+++|+.+.+..
T Consensus 31 ~~~vi~Np~sg~~--~~~~~i~~~l~~~g~~~~~~~ 64 (332)
T 2bon_A 31 ASLLILNGKSTDN--LPLREAIMLLREEGMTIHVRV 64 (332)
T ss_dssp CEEEEECSSSTTC--HHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCC--chHHHHHHHHHHcCCcEEEEE
Confidence 4555665433322 356778889999998776543
No 103
>3t5x_B 26S proteasome complex subunit DSS1; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} PDB: 1iyj_A 1mje_B 1miu_B
Probab=20.37 E-value=47 Score=19.83 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=15.1
Q ss_pred cccHHHHHHHHHccCCee
Q 044488 38 RDNFTSHLYSALCHNNIE 55 (125)
Q Consensus 38 ~~~fv~~L~~~L~~~Gi~ 55 (125)
...|..+|++.|++.|.+
T Consensus 49 ~DDFs~QLr~EL~k~~~k 66 (70)
T 3t5x_B 49 EDDFSNQLRAELEKHGYK 66 (70)
T ss_dssp CSHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHhhhc
Confidence 457999999999988754
No 104
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=20.05 E-value=1.4e+02 Score=21.26 Aligned_cols=40 Identities=10% Similarity=0.054 Sum_probs=20.0
Q ss_pred cHHHHHHHHHccCCeeeEEeCCCCCCc-cchHHHHHHHHhcc
Q 044488 40 NFTSHLYSALCHNNIETFIDNDLKRGD-EISQSLLDTIEAST 80 (125)
Q Consensus 40 ~fv~~L~~~L~~~Gi~vf~d~~~~~G~-~~~~~i~~aI~~s~ 80 (125)
.....+.++|++.|+.+-....+..|. .+. .....|..++
T Consensus 150 ~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~-~~~~~l~~~~ 190 (362)
T 3snr_A 150 LWFNDLKKQGEAMGLKIVGEERFARPDTSVA-GQALKLVAAN 190 (362)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECTTCSCCH-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCEEEEEeecCCCCCCHH-HHHHHHHhcC
Confidence 345566677777787654332233333 333 3334444443
Done!