Query 044489
Match_columns 207
No_of_seqs 182 out of 1690
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 05:57:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 5.1E-19 1.7E-23 124.3 9.0 81 90-172 9-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 1.5E-18 5.1E-23 117.4 3.7 69 102-173 5-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.7 1.7E-17 5.9E-22 105.3 4.7 51 121-171 4-54 (55)
4 2ep4_A Ring finger protein 24; 99.7 4.9E-17 1.7E-21 109.5 7.2 55 120-175 13-67 (74)
5 2kiz_A E3 ubiquitin-protein li 99.7 6.6E-17 2.2E-21 107.4 7.1 54 119-173 11-64 (69)
6 2ect_A Ring finger protein 126 99.7 6E-17 2.1E-21 110.1 6.7 57 120-177 13-69 (78)
7 2ecl_A Ring-box protein 2; RNF 99.7 7.4E-17 2.5E-21 110.8 5.0 52 121-172 14-76 (81)
8 1v87_A Deltex protein 2; ring- 99.6 1.3E-15 4.4E-20 110.8 7.5 61 121-182 24-104 (114)
9 2ecm_A Ring finger and CHY zin 99.6 7.8E-16 2.7E-20 97.5 4.8 50 121-171 4-54 (55)
10 3ng2_A RNF4, snurf, ring finge 99.6 5.8E-16 2E-20 103.1 3.7 56 120-176 8-67 (71)
11 2d8s_A Cellular modulator of i 99.6 2.1E-15 7.1E-20 103.3 5.9 58 120-179 13-77 (80)
12 3dpl_R Ring-box protein 1; ubi 99.6 2.3E-15 8E-20 108.4 5.6 50 121-171 36-100 (106)
13 2ea6_A Ring finger protein 4; 99.6 2.2E-15 7.6E-20 99.6 4.9 52 120-172 13-68 (69)
14 2d8t_A Dactylidin, ring finger 99.6 1.4E-15 4.9E-20 101.5 3.2 58 119-180 12-69 (71)
15 2xeu_A Ring finger protein 4; 99.5 1.7E-15 5.7E-20 98.7 2.7 54 121-175 2-59 (64)
16 2djb_A Polycomb group ring fin 99.5 1.7E-14 5.7E-19 96.6 6.4 56 120-178 13-68 (72)
17 2ecn_A Ring finger protein 141 99.5 8.4E-15 2.9E-19 97.3 4.4 51 120-175 13-63 (70)
18 2ct2_A Tripartite motif protei 99.5 4.6E-14 1.6E-18 97.6 7.5 55 120-175 13-71 (88)
19 1chc_A Equine herpes virus-1 r 99.5 2.6E-14 8.8E-19 94.4 5.1 49 121-172 4-52 (68)
20 4a0k_B E3 ubiquitin-protein li 99.5 4.6E-15 1.6E-19 108.5 0.6 51 121-172 47-112 (117)
21 2ct0_A Non-SMC element 1 homol 99.4 1.7E-13 5.7E-18 92.2 6.5 50 120-172 13-64 (74)
22 2ecy_A TNF receptor-associated 99.4 1.8E-13 6.3E-18 89.8 5.7 51 120-174 13-64 (66)
23 2ysl_A Tripartite motif-contai 99.4 3.6E-13 1.2E-17 90.0 6.6 51 120-174 18-71 (73)
24 2csy_A Zinc finger protein 183 99.4 2.7E-13 9.3E-18 92.6 5.9 48 120-171 13-60 (81)
25 1g25_A CDK-activating kinase a 99.4 2E-13 6.7E-18 89.4 4.6 54 121-175 2-58 (65)
26 4ap4_A E3 ubiquitin ligase RNF 99.4 1.6E-13 5.3E-18 101.6 3.1 55 121-176 6-64 (133)
27 2yur_A Retinoblastoma-binding 99.4 6.3E-13 2.2E-17 89.3 5.7 52 121-175 14-67 (74)
28 4ayc_A E3 ubiquitin-protein li 99.4 3.2E-13 1.1E-17 101.5 4.1 47 122-172 53-99 (138)
29 2ecw_A Tripartite motif-contai 99.4 1.2E-12 4E-17 89.6 6.2 50 121-174 18-73 (85)
30 1t1h_A Gspef-atpub14, armadill 99.3 1.2E-12 4E-17 88.6 5.6 52 120-175 6-58 (78)
31 3lrq_A E3 ubiquitin-protein li 99.3 5E-13 1.7E-17 95.1 3.8 52 122-176 22-74 (100)
32 2ecv_A Tripartite motif-contai 99.3 1.6E-12 5.5E-17 88.9 6.2 52 120-175 17-74 (85)
33 2egp_A Tripartite motif-contai 99.3 4.2E-13 1.4E-17 90.9 2.9 51 120-174 10-67 (79)
34 2y43_A E3 ubiquitin-protein li 99.3 1.2E-12 4.2E-17 92.7 4.4 50 122-174 22-71 (99)
35 4ap4_A E3 ubiquitin ligase RNF 99.3 7.1E-13 2.4E-17 98.1 2.7 54 121-175 71-128 (133)
36 2ckl_A Polycomb group ring fin 99.3 2.6E-12 8.9E-17 92.4 4.8 50 121-173 14-63 (108)
37 2ecj_A Tripartite motif-contai 99.3 3.8E-12 1.3E-16 81.0 5.0 42 121-166 14-58 (58)
38 2ysj_A Tripartite motif-contai 99.3 4.9E-12 1.7E-16 82.1 5.5 43 120-166 18-63 (63)
39 1e4u_A Transcriptional repress 99.3 1.4E-11 4.8E-16 83.7 7.6 56 120-176 9-66 (78)
40 3fl2_A E3 ubiquitin-protein li 99.2 6.8E-12 2.3E-16 92.4 5.7 48 122-173 52-100 (124)
41 2ckl_B Ubiquitin ligase protei 99.2 3.9E-12 1.3E-16 98.2 3.7 48 122-172 54-102 (165)
42 1jm7_A BRCA1, breast cancer ty 99.2 7.8E-12 2.7E-16 90.1 5.1 52 122-177 21-75 (112)
43 3ztg_A E3 ubiquitin-protein li 99.2 1.3E-11 4.4E-16 86.1 5.2 49 120-171 11-61 (92)
44 2vje_A E3 ubiquitin-protein li 99.2 8.6E-12 2.9E-16 81.5 3.0 49 120-171 6-56 (64)
45 3hct_A TNF receptor-associated 99.2 9.9E-12 3.4E-16 90.8 3.4 52 120-175 16-68 (118)
46 1z6u_A NP95-like ring finger p 99.2 2E-11 6.7E-16 93.1 4.4 49 122-174 78-127 (150)
47 1rmd_A RAG1; V(D)J recombinati 99.2 1.5E-11 5.1E-16 89.5 3.4 53 122-178 23-76 (116)
48 2kre_A Ubiquitin conjugation f 99.1 4E-11 1.4E-15 85.3 4.1 53 120-176 27-79 (100)
49 3l11_A E3 ubiquitin-protein li 99.1 7.7E-12 2.6E-16 90.9 0.3 48 121-172 14-62 (115)
50 2kr4_A Ubiquitin conjugation f 99.1 8.4E-11 2.9E-15 81.1 4.5 53 120-176 12-64 (85)
51 3k1l_B Fancl; UBC, ring, RWD, 99.1 2.7E-11 9.4E-16 102.6 2.3 55 119-173 305-374 (381)
52 2y1n_A E3 ubiquitin-protein li 99.1 6.7E-11 2.3E-15 102.4 4.4 51 122-176 332-383 (389)
53 1bor_A Transcription factor PM 99.1 4.6E-11 1.6E-15 75.9 2.5 46 120-172 4-49 (56)
54 1wgm_A Ubiquitin conjugation f 99.1 1.7E-10 5.8E-15 81.7 5.4 53 121-177 21-74 (98)
55 2vje_B MDM4 protein; proto-onc 99.1 4.9E-11 1.7E-15 77.7 2.1 49 121-171 6-55 (63)
56 3knv_A TNF receptor-associated 99.0 5.6E-11 1.9E-15 89.6 2.3 48 121-172 30-78 (141)
57 1jm7_B BARD1, BRCA1-associated 99.0 9.6E-11 3.3E-15 85.4 2.7 49 122-176 22-71 (117)
58 1vyx_A ORF K3, K3RING; zinc-bi 99.0 4.1E-10 1.4E-14 72.6 4.7 48 120-171 4-58 (60)
59 4ic3_A E3 ubiquitin-protein li 98.9 4.5E-10 1.5E-14 75.3 2.7 43 122-172 24-67 (74)
60 2ea5_A Cell growth regulator w 98.9 2.5E-09 8.4E-14 70.6 5.3 49 119-175 12-61 (68)
61 3hcs_A TNF receptor-associated 98.9 5.8E-10 2E-14 86.3 2.5 51 121-175 17-68 (170)
62 1wim_A KIAA0161 protein; ring 98.9 1.2E-09 4.1E-14 76.4 3.3 51 121-172 4-66 (94)
63 2c2l_A CHIP, carboxy terminus 98.8 1.2E-09 4E-14 90.2 3.6 54 119-176 205-259 (281)
64 2yu4_A E3 SUMO-protein ligase 98.8 9.1E-10 3.1E-14 77.2 2.4 54 121-177 6-68 (94)
65 2ecg_A Baculoviral IAP repeat- 98.8 4E-09 1.4E-13 70.7 4.2 44 122-173 25-69 (75)
66 2bay_A PRE-mRNA splicing facto 98.7 8.7E-09 3E-13 66.5 3.1 55 122-179 3-57 (61)
67 2f42_A STIP1 homology and U-bo 98.7 8E-09 2.7E-13 80.6 2.6 53 120-176 104-157 (179)
68 2yho_A E3 ubiquitin-protein li 98.6 1.1E-08 3.9E-13 69.3 2.3 44 122-173 18-62 (79)
69 3htk_C E3 SUMO-protein ligase 98.5 4.3E-08 1.5E-12 80.4 3.3 54 121-177 180-237 (267)
70 3vk6_A E3 ubiquitin-protein li 98.5 1.2E-07 4.2E-12 66.2 4.2 46 124-172 3-49 (101)
71 3t6p_A Baculoviral IAP repeat- 98.5 4.1E-08 1.4E-12 84.1 1.8 43 122-172 295-338 (345)
72 3nw0_A Non-structural maintena 98.3 6.4E-07 2.2E-11 72.9 4.9 50 121-173 179-230 (238)
73 2ko5_A Ring finger protein Z; 97.2 0.00055 1.9E-08 47.0 4.8 53 120-177 26-78 (99)
74 2lri_C Autoimmune regulator; Z 96.5 0.0043 1.5E-07 40.1 4.7 46 121-170 11-60 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 95.2 0.017 5.8E-07 39.9 3.8 34 122-156 3-36 (101)
76 1wil_A KIAA1045 protein; ring 94.6 0.057 1.9E-06 36.3 4.7 35 120-156 13-47 (89)
77 2l5u_A Chromodomain-helicase-D 94.0 0.056 1.9E-06 34.1 3.6 47 119-169 8-58 (61)
78 1mm2_A MI2-beta; PHD, zinc fin 91.9 0.059 2E-06 34.0 1.5 47 120-170 7-57 (61)
79 3o36_A Transcription intermedi 90.5 0.073 2.5E-06 41.0 1.0 46 121-170 3-52 (184)
80 1f62_A Transcription factor WS 90.5 0.17 5.7E-06 30.4 2.5 44 124-168 2-49 (51)
81 1fp0_A KAP-1 corepressor; PHD 90.5 0.25 8.7E-06 33.5 3.6 48 119-170 22-73 (88)
82 1we9_A PHD finger family prote 90.3 0.11 3.9E-06 32.8 1.6 50 120-169 4-58 (64)
83 1xwh_A Autoimmune regulator; P 89.9 0.12 4.1E-06 33.0 1.5 46 120-169 6-55 (66)
84 2yql_A PHD finger protein 21A; 89.6 0.071 2.4E-06 32.9 0.2 46 119-168 6-55 (56)
85 3u5n_A E3 ubiquitin-protein li 89.6 0.09 3.1E-06 41.3 0.8 47 120-170 5-55 (207)
86 2jwa_A Receptor tyrosine-prote 89.5 0.75 2.6E-05 26.9 4.6 23 45-67 14-36 (44)
87 1weo_A Cellulose synthase, cat 89.5 3.5 0.00012 27.8 8.5 53 120-172 14-70 (93)
88 2l43_A N-teminal domain from h 89.2 0.19 6.5E-06 34.1 2.1 54 120-173 23-79 (88)
89 3lqh_A Histone-lysine N-methyl 87.9 0.26 9E-06 38.1 2.4 49 122-170 2-64 (183)
90 1wev_A Riken cDNA 1110020M19; 87.8 0.065 2.2E-06 36.4 -0.9 52 121-172 15-75 (88)
91 3v43_A Histone acetyltransfera 87.6 0.18 6.2E-06 35.6 1.2 46 123-168 62-111 (112)
92 2ks1_B Epidermal growth factor 87.2 1.1 3.9E-05 26.2 4.3 7 45-51 13-19 (44)
93 2ku3_A Bromodomain-containing 87.1 0.37 1.3E-05 31.2 2.4 50 120-169 14-66 (71)
94 2ysm_A Myeloid/lymphoid or mix 86.8 0.26 8.8E-06 34.6 1.7 47 120-167 5-55 (111)
95 2k16_A Transcription initiatio 86.7 0.16 5.5E-06 33.1 0.5 50 121-171 17-70 (75)
96 1wep_A PHF8; structural genomi 86.3 2.1 7.2E-05 28.0 5.9 48 121-170 11-64 (79)
97 2puy_A PHD finger protein 21A; 85.7 0.18 6.2E-06 31.4 0.3 46 121-170 4-53 (60)
98 2lbm_A Transcriptional regulat 84.9 1.4 4.9E-05 32.5 5.0 46 120-169 61-117 (142)
99 3v43_A Histone acetyltransfera 84.4 1.9 6.4E-05 30.2 5.3 47 121-167 4-62 (112)
100 2l2t_A Receptor tyrosine-prote 83.8 1.6 5.4E-05 25.5 3.8 22 45-66 12-34 (44)
101 1z2q_A LM5-1; membrane protein 83.4 1.4 5E-05 29.2 4.1 39 118-156 17-55 (84)
102 2vpb_A Hpygo1, pygopus homolog 82.2 1.4 4.7E-05 28.0 3.4 49 120-168 6-65 (65)
103 3ql9_A Transcriptional regulat 82.2 2.2 7.6E-05 30.9 5.0 46 120-169 55-111 (129)
104 2yt5_A Metal-response element- 82.0 0.89 3E-05 28.6 2.5 51 120-170 4-62 (66)
105 2cs3_A Protein C14ORF4, MY039 81.9 1.9 6.6E-05 28.6 4.1 40 120-159 13-52 (93)
106 3m62_A Ubiquitin conjugation f 81.8 0.69 2.3E-05 44.3 2.6 53 121-177 890-943 (968)
107 1x4u_A Zinc finger, FYVE domai 81.4 1.7 5.8E-05 28.8 3.9 39 117-155 9-47 (84)
108 2ro1_A Transcription intermedi 81.2 0.42 1.4E-05 36.9 0.8 45 122-170 2-50 (189)
109 2lv9_A Histone-lysine N-methyl 80.6 0.83 2.8E-05 31.4 2.1 45 122-168 28-75 (98)
110 2yw8_A RUN and FYVE domain-con 80.3 1.4 4.7E-05 29.2 3.0 38 119-156 16-53 (82)
111 2klu_A T-cell surface glycopro 80.1 3.4 0.00012 26.2 4.6 6 38-43 4-9 (70)
112 2xb1_A Pygopus homolog 2, B-ce 80.0 0.39 1.3E-05 33.6 0.3 49 122-170 3-62 (105)
113 1wem_A Death associated transc 79.3 1.1 3.9E-05 29.0 2.4 47 122-170 16-71 (76)
114 3t7l_A Zinc finger FYVE domain 79.2 1.7 6E-05 29.2 3.3 51 120-170 18-74 (90)
115 1y02_A CARP2, FYVE-ring finger 79.0 0.33 1.1E-05 34.9 -0.4 50 120-169 17-66 (120)
116 2e6r_A Jumonji/ARID domain-con 79.0 0.33 1.1E-05 33.1 -0.4 48 121-169 15-66 (92)
117 2kwj_A Zinc finger protein DPF 78.4 0.87 3E-05 32.1 1.7 45 123-167 2-59 (114)
118 3shb_A E3 ubiquitin-protein li 77.3 0.36 1.2E-05 31.8 -0.6 45 124-169 28-77 (77)
119 1joc_A EEA1, early endosomal a 76.5 1.9 6.5E-05 31.0 3.1 37 119-155 66-102 (125)
120 1wfk_A Zinc finger, FYVE domai 76.0 3 0.0001 28.0 3.7 54 120-173 7-67 (88)
121 1wew_A DNA-binding family prot 75.4 1.7 6E-05 28.4 2.4 49 121-170 15-73 (78)
122 2ri7_A Nucleosome-remodeling f 74.7 0.78 2.7E-05 34.6 0.6 48 121-169 7-59 (174)
123 4gne_A Histone-lysine N-methyl 73.5 4 0.00014 28.5 4.0 47 120-172 13-65 (107)
124 2knc_A Integrin alpha-IIB; tra 73.1 13 0.00045 22.6 5.9 19 42-60 12-30 (54)
125 1vfy_A Phosphatidylinositol-3- 73.0 2.8 9.5E-05 27.0 2.9 33 123-155 12-44 (73)
126 1zbd_B Rabphilin-3A; G protein 72.6 2.2 7.6E-05 31.1 2.6 50 120-169 53-107 (134)
127 1wen_A Inhibitor of growth fam 72.4 4.5 0.00015 26.0 3.8 45 121-170 15-66 (71)
128 2e6s_A E3 ubiquitin-protein li 72.2 0.87 3E-05 29.9 0.3 46 123-169 27-77 (77)
129 1z60_A TFIIH basal transcripti 72.1 2.5 8.4E-05 26.3 2.3 42 123-166 16-58 (59)
130 2kgg_A Histone demethylase jar 71.8 1.4 5E-05 26.4 1.2 44 124-167 4-52 (52)
131 1weu_A Inhibitor of growth fam 71.6 4.1 0.00014 27.6 3.6 45 121-170 35-86 (91)
132 2co8_A NEDD9 interacting prote 70.4 3.8 0.00013 26.7 3.2 44 121-175 14-57 (82)
133 3asl_A E3 ubiquitin-protein li 69.4 1 3.5E-05 29.0 0.1 45 124-169 20-69 (70)
134 1wee_A PHD finger family prote 68.2 1.1 3.8E-05 28.8 0.1 48 122-170 16-67 (72)
135 2cu8_A Cysteine-rich protein 2 67.7 3.4 0.00012 26.3 2.4 42 121-173 8-49 (76)
136 1dvp_A HRS, hepatocyte growth 67.7 2.8 9.6E-05 32.9 2.4 35 122-156 161-195 (220)
137 2ysm_A Myeloid/lymphoid or mix 67.0 1.1 3.8E-05 31.2 -0.1 45 124-169 56-104 (111)
138 2dj7_A Actin-binding LIM prote 66.5 4.4 0.00015 26.2 2.8 41 121-172 14-54 (80)
139 3i2d_A E3 SUMO-protein ligase 65.9 4.3 0.00015 34.6 3.3 48 123-173 250-301 (371)
140 3zyq_A Hepatocyte growth facto 65.8 5.6 0.00019 31.3 3.8 49 122-170 164-220 (226)
141 2gmg_A Hypothetical protein PF 65.1 1.2 4.2E-05 31.0 -0.2 23 143-170 72-94 (105)
142 3ask_A E3 ubiquitin-protein li 64.4 1.8 6.2E-05 34.4 0.7 46 123-169 175-225 (226)
143 4fo9_A E3 SUMO-protein ligase 64.4 4.8 0.00016 34.2 3.3 48 123-173 216-267 (360)
144 2l8s_A Integrin alpha-1; trans 64.1 19 0.00063 21.9 5.0 18 43-60 10-27 (54)
145 1wyh_A SLIM 2, skeletal muscle 64.0 3.5 0.00012 25.8 1.9 42 122-173 5-46 (72)
146 1x4k_A Skeletal muscle LIM-pro 63.7 3.8 0.00013 25.6 2.1 42 122-173 5-46 (72)
147 1g47_A Pinch protein; LIM doma 63.0 4 0.00014 25.9 2.1 43 121-173 10-52 (77)
148 1x4l_A Skeletal muscle LIM-pro 61.6 5.4 0.00018 24.9 2.5 42 122-173 5-48 (72)
149 1iml_A CRIP, cysteine rich int 61.5 2.2 7.6E-05 27.2 0.6 9 163-171 30-38 (76)
150 3o70_A PHD finger protein 13; 61.2 2.2 7.7E-05 27.2 0.6 46 121-168 18-66 (68)
151 3mpx_A FYVE, rhogef and PH dom 60.9 1.8 6E-05 37.2 0.0 51 120-170 373-430 (434)
152 1x61_A Thyroid receptor intera 60.7 5.6 0.00019 24.8 2.5 40 122-171 5-44 (72)
153 2k1k_A Ephrin type-A receptor 60.6 8.4 0.00029 21.6 2.9 7 44-50 15-21 (38)
154 1iij_A ERBB-2 receptor protein 60.2 3.2 0.00011 23.0 1.0 22 45-66 10-31 (35)
155 3fyb_A Protein of unknown func 59.2 3.7 0.00013 28.2 1.4 12 147-158 41-52 (104)
156 2o35_A Hypothetical protein DU 59.2 3.7 0.00013 28.3 1.4 12 147-158 42-53 (105)
157 2kwj_A Zinc finger protein DPF 58.6 0.69 2.4E-05 32.7 -2.5 46 124-170 60-109 (114)
158 2d8y_A Eplin protein; LIM doma 58.3 10 0.00035 24.9 3.6 43 121-174 14-56 (91)
159 2k9y_A Ephrin type-A receptor 57.7 7.9 0.00027 21.7 2.5 11 45-55 15-25 (41)
160 2k1a_A Integrin alpha-IIB; sin 57.6 25 0.00084 20.1 4.8 22 41-62 9-30 (42)
161 1x63_A Skeletal muscle LIM-pro 57.3 5.7 0.00019 25.5 2.1 42 122-173 15-56 (82)
162 2cor_A Pinch protein; LIM doma 57.2 9.6 0.00033 24.4 3.2 41 121-173 14-54 (79)
163 3f6q_B LIM and senescent cell 56.4 7.6 0.00026 23.9 2.5 43 121-173 10-52 (72)
164 2vnf_A ING 4, P29ING4, inhibit 55.2 2.6 9E-05 26.1 0.1 42 122-168 10-58 (60)
165 1x68_A FHL5 protein; four-and- 55.0 7.5 0.00026 24.6 2.3 42 122-173 5-48 (76)
166 2zet_C Melanophilin; complex, 54.8 6.5 0.00022 29.2 2.2 48 121-169 67-117 (153)
167 2rsd_A E3 SUMO-protein ligase 54.5 1.8 6.1E-05 27.5 -0.8 45 123-168 11-64 (68)
168 1zfo_A LAsp-1; LIM domain, zin 52.9 7.3 0.00025 20.5 1.7 28 123-153 4-31 (31)
169 2g6q_A Inhibitor of growth pro 52.2 3.4 0.00012 25.8 0.3 43 122-169 11-60 (62)
170 1a7i_A QCRP2 (LIM1); LIM domai 52.0 3 0.0001 26.9 -0.0 41 122-173 7-47 (81)
171 3mjh_B Early endosome antigen 49.3 1.4 4.6E-05 24.3 -1.7 16 122-137 5-20 (34)
172 3a1b_A DNA (cytosine-5)-methyl 48.8 18 0.0006 27.1 3.8 45 121-169 78-134 (159)
173 2jvx_A NF-kappa-B essential mo 48.5 4.2 0.00014 21.3 0.2 13 160-172 3-15 (28)
174 1x64_A Alpha-actinin-2 associa 48.5 20 0.00067 23.3 3.7 41 121-173 24-64 (89)
175 1x62_A C-terminal LIM domain p 47.6 14 0.00046 23.5 2.7 40 121-172 14-53 (79)
176 2pk7_A Uncharacterized protein 46.5 4.4 0.00015 26.0 0.1 19 154-172 2-20 (69)
177 1nyp_A Pinch protein; LIM doma 44.9 7.7 0.00026 23.7 1.1 39 122-172 5-43 (66)
178 2jny_A Uncharacterized BCR; st 44.5 4 0.00014 26.0 -0.3 19 154-172 4-22 (67)
179 2pv0_B DNA (cytosine-5)-methyl 44.3 19 0.00066 30.8 3.8 45 121-169 92-148 (386)
180 2d8x_A Protein pinch; LIM doma 43.8 14 0.00047 22.8 2.2 41 121-173 4-44 (70)
181 2cur_A Skeletal muscle LIM-pro 42.4 16 0.00054 22.4 2.3 39 122-172 5-43 (69)
182 2l3k_A Rhombotin-2, linker, LI 42.4 8.4 0.00029 27.0 1.1 34 122-157 36-69 (123)
183 2d8z_A Four and A half LIM dom 41.8 14 0.00049 22.7 2.0 39 122-172 5-43 (70)
184 2cup_A Skeletal muscle LIM-pro 41.4 17 0.00057 24.1 2.5 46 122-172 33-78 (101)
185 2kog_A Vesicle-associated memb 40.6 28 0.00096 24.5 3.6 9 53-61 106-114 (119)
186 2ehe_A Four and A half LIM dom 40.6 13 0.00045 23.7 1.8 42 122-173 15-56 (82)
187 2d8v_A Zinc finger FYVE domain 40.5 26 0.0009 22.1 3.0 32 120-156 6-38 (67)
188 3c6w_A P28ING5, inhibitor of g 40.3 5.1 0.00018 24.6 -0.3 42 122-168 9-57 (59)
189 3o7a_A PHD finger protein 13 v 40.0 5.4 0.00019 23.7 -0.2 41 127-168 8-51 (52)
190 1wd2_A Ariadne-1 protein homol 39.0 9.9 0.00034 23.5 0.9 16 159-174 5-20 (60)
191 2dar_A PDZ and LIM domain prot 38.8 15 0.00052 24.0 1.9 41 121-173 24-64 (90)
192 2egq_A FHL1 protein; LIM domai 38.4 17 0.00057 22.8 2.0 42 122-173 15-59 (77)
193 2rgt_A Fusion of LIM/homeobox 37.1 21 0.00072 26.3 2.7 39 123-171 66-104 (169)
194 3kqi_A GRC5, PHD finger protei 36.9 8.9 0.0003 24.6 0.4 47 124-170 11-62 (75)
195 1v6g_A Actin binding LIM prote 36.1 15 0.0005 23.4 1.5 38 123-172 16-53 (81)
196 2jmi_A Protein YNG1, ING1 homo 35.7 11 0.00038 25.3 0.8 43 121-168 25-75 (90)
197 2kpi_A Uncharacterized protein 35.7 3.5 0.00012 25.2 -1.6 18 155-172 5-22 (56)
198 2jne_A Hypothetical protein YF 35.4 10 0.00035 26.0 0.5 43 122-173 32-74 (101)
199 2jmo_A Parkin; IBR, E3 ligase, 34.0 3 0.0001 27.3 -2.2 15 143-157 55-69 (80)
200 2jr6_A UPF0434 protein NMA0874 34.0 4.5 0.00015 25.8 -1.4 18 155-172 3-20 (68)
201 2l4z_A DNA endonuclease RBBP8, 33.8 20 0.00069 25.1 2.0 39 122-171 61-99 (123)
202 2cuq_A Four and A half LIM dom 31.1 22 0.00076 22.4 1.7 39 122-172 15-53 (80)
203 2hf1_A Tetraacyldisaccharide-1 31.0 4.5 0.00015 25.8 -1.7 17 156-172 4-20 (68)
204 2akl_A PHNA-like protein PA012 30.8 16 0.00054 26.4 0.9 26 122-147 27-53 (138)
205 1m3v_A FLIN4, fusion of the LI 30.0 73 0.0025 21.9 4.4 52 123-176 33-85 (122)
206 1rut_X Flinc4, fusion protein 29.8 30 0.001 25.9 2.5 37 124-170 71-107 (188)
207 2k21_A Potassium voltage-gated 29.7 1E+02 0.0035 22.1 5.0 22 45-66 56-77 (138)
208 3pwf_A Rubrerythrin; non heme 29.5 30 0.001 25.9 2.4 23 140-169 140-162 (170)
209 2js4_A UPF0434 protein BB2007; 29.4 4.9 0.00017 25.8 -1.8 16 156-171 4-19 (70)
210 2jyp_A Aragonite protein AP7; 29.3 21 0.00072 18.9 1.0 19 121-139 8-26 (36)
211 2iyb_E Testin, TESS, TES; LIM 29.3 20 0.00067 21.8 1.1 41 123-173 3-45 (65)
212 2jp3_A FXYD domain-containing 28.1 78 0.0027 19.9 3.7 22 46-67 19-40 (67)
213 2dlo_A Thyroid receptor-intera 27.4 21 0.00071 22.6 1.0 40 122-173 15-54 (81)
214 1zza_A Stannin, AG8_1; helix, 27.3 99 0.0034 19.8 4.2 15 45-59 14-28 (90)
215 2lcq_A Putative toxin VAPC6; P 26.3 15 0.00052 27.1 0.2 22 143-170 137-158 (165)
216 1x3h_A Leupaxin; paxillin fami 26.3 28 0.00095 21.9 1.5 40 122-173 15-54 (80)
217 2csz_A Synaptotagmin-like prot 25.9 38 0.0013 22.0 2.0 34 119-152 22-56 (76)
218 2ct7_A Ring finger protein 31; 25.1 7.6 0.00026 25.6 -1.5 19 139-157 44-62 (86)
219 1j2o_A FLIN2, fusion of rhombo 24.8 33 0.0011 23.4 1.8 35 122-158 30-65 (114)
220 2jrp_A Putative cytoplasmic pr 24.6 35 0.0012 22.5 1.7 14 123-136 3-16 (81)
221 2xjy_A Rhombotin-2; oncoprotei 24.4 69 0.0024 22.1 3.5 49 122-172 29-78 (131)
222 2xqn_T Testin, TESS; metal-bin 24.0 80 0.0027 21.6 3.8 46 122-172 30-75 (126)
223 1wig_A KIAA1808 protein; LIM d 23.7 43 0.0015 20.8 2.0 38 122-171 5-42 (73)
224 1yuz_A Nigerythrin; rubrythrin 23.3 44 0.0015 25.7 2.4 25 138-169 171-195 (202)
225 2k5r_A Uncharacterized protein 23.0 12 0.00042 25.5 -0.8 18 155-172 3-20 (97)
226 1b8t_A Protein (CRP1); LIM dom 22.8 23 0.0008 26.6 0.7 41 122-173 115-155 (192)
227 1lko_A Rubrerythrin all-iron(I 22.6 27 0.00094 26.5 1.0 24 140-169 157-180 (191)
228 2zxe_G FXYD10, phospholemman-l 22.5 70 0.0024 20.5 2.8 23 45-67 20-42 (74)
229 2jo1_A Phospholemman; FXYD1, N 21.0 1.7E+02 0.0058 18.6 5.0 22 46-67 18-39 (72)
230 2ku7_A MLL1 PHD3-CYP33 RRM chi 20.6 1.4E+02 0.0046 20.3 4.4 28 143-170 7-45 (140)
231 3kv5_D JMJC domain-containing 20.2 33 0.0011 30.3 1.1 48 122-170 37-89 (488)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.78 E-value=5.1e-19 Score=124.31 Aligned_cols=81 Identities=28% Similarity=0.704 Sum_probs=69.7
Q ss_pred CCCCCCCCCCHHHHhhCCCeecCCCCCCCCCCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCc
Q 044489 90 QPAFVPTGLDKPTIESYPKTILGDSGRLPKPNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNS 169 (207)
Q Consensus 90 ~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~ 169 (207)
.......+++++.++.+|...+..... ....+.+|+||+++|..++.++.++ |+|.||.+||..|++.+.+||+||++
T Consensus 9 ~~~~~~~~~s~~~i~~lp~~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 9 SHMVANPPASKESIDALPEILVTEDHG-AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp CCSSCCCCCCHHHHHTSCEEECCTTCS-SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred CCCcCCCCCCHHHHHhCCCeeeccccc-ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCcc
Confidence 455677899999999999988865442 2345678999999999999999998 99999999999999999999999998
Q ss_pred CCC
Q 044489 170 REN 172 (207)
Q Consensus 170 ~~~ 172 (207)
+..
T Consensus 87 ~~~ 89 (91)
T 2l0b_A 87 FPP 89 (91)
T ss_dssp SSC
T ss_pred CCC
Confidence 864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-18 Score=117.38 Aligned_cols=69 Identities=36% Similarity=0.937 Sum_probs=56.8
Q ss_pred HHhhCCCeecCCCCCCCCCCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 102 TIESYPKTILGDSGRLPKPNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 102 ~i~~~p~~~~~~~~~~~~~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
.++.+|...+.... ...++.+|+||+++|..++.++.++ |+|.||.+||.+|++.+.+||+||+++...
T Consensus 5 ~i~~lp~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNN--HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSS--CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCcc--ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 34566776665432 2345679999999999999999998 999999999999999999999999998654
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.69 E-value=1.7e-17 Score=105.32 Aligned_cols=51 Identities=43% Similarity=0.976 Sum_probs=46.7
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRE 171 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~ 171 (207)
++.+|+||+++|..++.+..++.|+|.||.+||.+|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 467899999999999888888779999999999999999999999999874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=4.9e-17 Score=109.47 Aligned_cols=55 Identities=31% Similarity=0.841 Sum_probs=48.9
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENSSV 175 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~~ 175 (207)
..+.+|+||+++|..++.++.++ |+|.||.+||.+|++.+.+||+||+++.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 34679999999999999998898 99999999999999988999999999865433
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=6.6e-17 Score=107.38 Aligned_cols=54 Identities=39% Similarity=0.989 Sum_probs=48.4
Q ss_pred CCCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 119 KPNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 119 ~~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
.....+|+||++.|..++.++.++ |+|.||.+||.+|++.+.+||+||+++...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 345678999999999888888898 999999999999999899999999998654
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.68 E-value=6e-17 Score=110.12 Aligned_cols=57 Identities=39% Similarity=0.937 Sum_probs=50.7
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCCCCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENSSVVT 177 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~~~~ 177 (207)
....+|+||+++|..++.++.++ |+|.||.+||.+|++.+.+||+||+++.......
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 45679999999999998888898 9999999999999998999999999987765543
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7.4e-17 Score=110.82 Aligned_cols=52 Identities=33% Similarity=0.765 Sum_probs=43.4
Q ss_pred CCCcccccCccCCC-----------CCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 044489 121 NDSTCPICLCEYHP-----------KETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSREN 172 (207)
Q Consensus 121 ~~~~C~ICL~~~~~-----------~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~ 172 (207)
++..|+||+++|.+ ++.++.+++|+|.||.+||++||+.+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 46678888888854 44566666799999999999999999999999999754
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.61 E-value=1.3e-15 Score=110.82 Aligned_cols=61 Identities=21% Similarity=0.499 Sum_probs=46.5
Q ss_pred CCCcccccCccCCCCC---------------ceeecCCCCCcccHHHHHHHh-----hcCCCCccccCcCCCCCCCCCCc
Q 044489 121 NDSTCPICLCEYHPKE---------------TLRSIPKCNHYFHAICIDEWL-----KINATCPLCRNSRENSSVVTPSS 180 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~---------------~v~~lp~C~H~FH~~CI~~Wl-----~~~~~CP~CR~~~~~~~~~~~~~ 180 (207)
.+.+|+||+++|..+. .++.++ |+|.||.+||..|+ +.+.+||+||+.+.......|..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g 102 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWG 102 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCC
Confidence 3568999999997653 333566 99999999999999 45679999999987665444443
Q ss_pred cc
Q 044489 181 SI 182 (207)
Q Consensus 181 ~~ 182 (207)
.+
T Consensus 103 ~m 104 (114)
T 1v87_A 103 KM 104 (114)
T ss_dssp SC
T ss_pred eE
Confidence 33
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.60 E-value=7.8e-16 Score=97.50 Aligned_cols=50 Identities=38% Similarity=0.889 Sum_probs=43.4
Q ss_pred CCCcccccCccCCCCC-ceeecCCCCCcccHHHHHHHhhcCCCCccccCcCC
Q 044489 121 NDSTCPICLCEYHPKE-TLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRE 171 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~-~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~ 171 (207)
++.+|+||++++.+++ .+..++ |+|.||.+||.+|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4678999999997654 466676 9999999999999988899999999874
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.59 E-value=5.8e-16 Score=103.11 Aligned_cols=56 Identities=30% Similarity=0.676 Sum_probs=46.9
Q ss_pred CCCCcccccCccCCCC----CceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCCCCC
Q 044489 120 PNDSTCPICLCEYHPK----ETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENSSVV 176 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~----~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~~~ 176 (207)
.++.+|+||++.+.+. +.+..++ |||.||.+||.+|++.+.+||+||+++....+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 67 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhee
Confidence 4577999999998653 4456676 999999999999999999999999999766553
No 11
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.1e-15 Score=103.30 Aligned_cols=58 Identities=28% Similarity=0.769 Sum_probs=47.7
Q ss_pred CCCCcccccCccCCCCCceeecCCCC-----CcccHHHHHHHhhcC--CCCccccCcCCCCCCCCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCN-----HYFHAICIDEWLKIN--ATCPLCRNSRENSSVVTPS 179 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~-----H~FH~~CI~~Wl~~~--~~CP~CR~~~~~~~~~~~~ 179 (207)
.++..|.||+++|.+++.+ ++| |+ |.||.+||++||..+ .+||+||.++.......|.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P~ 77 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSGP 77 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCCC
Confidence 4567899999999887776 588 96 999999999999654 5899999999776655543
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.57 E-value=2.3e-15 Score=108.43 Aligned_cols=50 Identities=36% Similarity=0.624 Sum_probs=42.9
Q ss_pred CCCcccccCccCCCCC---------------ceeecCCCCCcccHHHHHHHhhcCCCCccccCcCC
Q 044489 121 NDSTCPICLCEYHPKE---------------TLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRE 171 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~---------------~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~ 171 (207)
++..|+||+++|.... .++.++ |+|.||.+||++||+.+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4678999999998651 355676 9999999999999999999999999864
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.2e-15 Score=99.55 Aligned_cols=52 Identities=33% Similarity=0.748 Sum_probs=43.9
Q ss_pred CCCCcccccCccCCCC----CceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 044489 120 PNDSTCPICLCEYHPK----ETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSREN 172 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~----~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~ 172 (207)
.+..+|+||++.|.+. +.+..++ |||.||.+||..|++.+.+||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4567899999998754 3345676 99999999999999989999999998864
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-15 Score=101.55 Aligned_cols=58 Identities=26% Similarity=0.530 Sum_probs=47.6
Q ss_pred CCCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCCCCCCCCc
Q 044489 119 KPNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENSSVVTPSS 180 (207)
Q Consensus 119 ~~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~~~~~~~ 180 (207)
..++.+|+||++.+.+. ..++ |+|.||.+||..|++.+..||+||+++....+..|.+
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~p~~ 69 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSGPS 69 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSCSCS
T ss_pred CCCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccCCCC
Confidence 34567999999998554 4566 9999999999999998999999999997766655543
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.54 E-value=1.7e-15 Score=98.70 Aligned_cols=54 Identities=31% Similarity=0.688 Sum_probs=45.4
Q ss_pred CCCcccccCccCCCC----CceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCCCC
Q 044489 121 NDSTCPICLCEYHPK----ETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENSSV 175 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~----~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~~ 175 (207)
++.+|+||++.+.+. +.+..++ |||.||.+||.+|++.+.+||+||+++....+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 357899999998753 3456676 99999999999999989999999999876554
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=96.58 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=45.8
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCCCCCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENSSVVTP 178 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~~~~~ 178 (207)
.+...|+||++.+.+. +..++ |||.||.+||..|++.+..||+||+++........
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 13 TPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred CCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 3467899999998753 33345 99999999999999889999999999977666543
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8.4e-15 Score=97.35 Aligned_cols=51 Identities=29% Similarity=0.760 Sum_probs=44.0
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENSSV 175 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~~ 175 (207)
.+..+|+||++.+.+ ..++ |+|.||.+||.+|++.+.+||+||+++.....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 346799999999876 5677 99999999999999999999999999875543
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.6e-14 Score=97.62 Aligned_cols=55 Identities=22% Similarity=0.625 Sum_probs=46.0
Q ss_pred CCCCcccccCccCCCCCc-eeecCCCCCcccHHHHHHHhhcC---CCCccccCcCCCCCC
Q 044489 120 PNDSTCPICLCEYHPKET-LRSIPKCNHYFHAICIDEWLKIN---ATCPLCRNSRENSSV 175 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~-v~~lp~C~H~FH~~CI~~Wl~~~---~~CP~CR~~~~~~~~ 175 (207)
.+..+|+||++.|.+.+. ...++ |||.||.+||..|++.+ ..||+||+++....+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 356789999999988764 56676 99999999999999765 789999999866543
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.49 E-value=2.6e-14 Score=94.36 Aligned_cols=49 Identities=39% Similarity=0.915 Sum_probs=42.2
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSREN 172 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~ 172 (207)
.+.+|+||++.+.+ .+..++ |||.||.+||..|++.+.+||+||+++..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 46789999999864 346677 99999999999999988999999999863
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.47 E-value=4.6e-15 Score=108.52 Aligned_cols=51 Identities=37% Similarity=0.634 Sum_probs=1.1
Q ss_pred CCCcccccCccCCCC-------------C--ceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 044489 121 NDSTCPICLCEYHPK-------------E--TLRSIPKCNHYFHAICIDEWLKINATCPLCRNSREN 172 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~-------------~--~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~ 172 (207)
.++.|+||+++|... + .+..++ |+|.||.+||++||+.+.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 467999999999753 2 222345 99999999999999999999999998743
No 21
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.7e-13 Score=92.17 Aligned_cols=50 Identities=20% Similarity=0.541 Sum_probs=42.9
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcC--CCCccccCcCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKIN--ATCPLCRNSREN 172 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~--~~CP~CR~~~~~ 172 (207)
....+|+||.+.+..++... .|+|.||.+||.+||+++ .+||+||+++..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 34689999999998776544 599999999999999877 799999999864
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=89.82 Aligned_cols=51 Identities=20% Similarity=0.486 Sum_probs=42.3
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHh-hcCCCCccccCcCCCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWL-KINATCPLCRNSRENSS 174 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl-~~~~~CP~CR~~~~~~~ 174 (207)
.+...|+||++.+.+... ++ |||.||.+||.+|+ +.+..||+||+++....
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ---TE-CGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSCCC---CS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcCeeE---CC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 346789999999876532 55 99999999999999 56678999999987654
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3.6e-13 Score=89.96 Aligned_cols=51 Identities=31% Similarity=0.653 Sum_probs=41.5
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhh---cCCCCccccCcCCCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLK---INATCPLCRNSRENSS 174 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~---~~~~CP~CR~~~~~~~ 174 (207)
.++..|+||++.+.+. ..++ |||.||.+||..|++ .+..||+||+++....
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 3567999999998743 3456 999999999999996 4568999999986654
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.7e-13 Score=92.59 Aligned_cols=48 Identities=23% Similarity=0.570 Sum_probs=41.5
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRE 171 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~ 171 (207)
.....|+||++.|.+. + +++ |||.||..||..|++....||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~p--~-~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP--V-VTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE--E-ECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe--e-Ecc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3467899999998653 3 466 9999999999999998999999999986
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=2e-13 Score=89.41 Aligned_cols=54 Identities=24% Similarity=0.533 Sum_probs=42.8
Q ss_pred CCCcccccCc-cCCCCCce-eecCCCCCcccHHHHHHHhh-cCCCCccccCcCCCCCC
Q 044489 121 NDSTCPICLC-EYHPKETL-RSIPKCNHYFHAICIDEWLK-INATCPLCRNSRENSSV 175 (207)
Q Consensus 121 ~~~~C~ICL~-~~~~~~~v-~~lp~C~H~FH~~CI~~Wl~-~~~~CP~CR~~~~~~~~ 175 (207)
++..|+||++ .+.++... ..++ |||.||.+||.+|+. .+..||+||+++....+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 3568999999 77666543 3455 999999999999974 45689999999876554
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.37 E-value=1.6e-13 Score=101.64 Aligned_cols=55 Identities=31% Similarity=0.686 Sum_probs=46.7
Q ss_pred CCCcccccCccCCCC----CceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCCCCC
Q 044489 121 NDSTCPICLCEYHPK----ETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENSSVV 176 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~----~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~~~ 176 (207)
++.+|+||++.|.++ +.+..++ |||.||.+||.+|++.+.+||+||+++....+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 64 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEE
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccccc
Confidence 467899999998764 4456776 999999999999999999999999999766553
No 27
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.37 E-value=6.3e-13 Score=89.34 Aligned_cols=52 Identities=25% Similarity=0.531 Sum_probs=41.3
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcC--CCCccccCcCCCCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKIN--ATCPLCRNSRENSSV 175 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~--~~CP~CR~~~~~~~~ 175 (207)
.+..|+||++.|.+. + .++.|||.||..||..|++.+ ..||+||+++.....
T Consensus 14 ~~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 14 DELLCLICKDIMTDA--V-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp GGGSCSSSCCCCTTC--E-ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred CCCCCcCCChHHhCC--e-EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 467899999998754 2 354599999999999999755 689999998654333
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.36 E-value=3.2e-13 Score=101.50 Aligned_cols=47 Identities=32% Similarity=0.851 Sum_probs=40.8
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSREN 172 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~ 172 (207)
+..|+||++.|.++ ..+| |||.||.+||..|+..+.+||+||+++..
T Consensus 53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 45799999998643 4577 99999999999999999999999999854
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=1.2e-12 Score=89.62 Aligned_cols=50 Identities=34% Similarity=0.676 Sum_probs=41.9
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc------CCCCccccCcCCCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI------NATCPLCRNSRENSS 174 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~------~~~CP~CR~~~~~~~ 174 (207)
++..|+||++.+.+.. .++ |+|.||.+||..|++. ...||+||+++....
T Consensus 18 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 18 EEVTCPICLELLKEPV---SAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp TTTSCTTTCSCCSSCE---ECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred cCCCCcCCChhhCcce---eCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 4679999999987652 566 9999999999999966 678999999987543
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.34 E-value=1.2e-12 Score=88.64 Aligned_cols=52 Identities=21% Similarity=0.494 Sum_probs=43.0
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc-CCCCccccCcCCCCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI-NATCPLCRNSRENSSV 175 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~~~~~~~ 175 (207)
.++..|+||++.|.++ + .++ |||.||..||..|++. +.+||+||+++....+
T Consensus 6 ~~~~~C~IC~~~~~~P--v-~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l 58 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP--V-IVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL 58 (78)
T ss_dssp SSSSSCTTTSCCCSSE--E-EET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCC
T ss_pred cccCCCCCccccccCC--E-EcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhhC
Confidence 3467999999998654 3 456 9999999999999976 7899999999876543
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.34 E-value=5e-13 Score=95.08 Aligned_cols=52 Identities=27% Similarity=0.559 Sum_probs=42.7
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcC-CCCccccCcCCCCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKIN-ATCPLCRNSRENSSVV 176 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~-~~CP~CR~~~~~~~~~ 176 (207)
+..|+||++.|.+ .+..++ |||.||..||..|++.+ ..||+||+++....+.
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 22 VFRCFICMEKLRD--ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV 74 (100)
T ss_dssp HTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred CCCCccCCccccC--ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH
Confidence 5789999999864 333366 99999999999999776 7999999999765544
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.6e-12 Score=88.93 Aligned_cols=52 Identities=33% Similarity=0.719 Sum_probs=42.8
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc------CCCCccccCcCCCCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI------NATCPLCRNSRENSSV 175 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~------~~~CP~CR~~~~~~~~ 175 (207)
.+..+|+||++.+.+. ..++ |||.||.+||..|++. ...||+||+++....+
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 3467999999998654 2456 9999999999999976 7799999999876443
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.33 E-value=4.2e-13 Score=90.92 Aligned_cols=51 Identities=31% Similarity=0.591 Sum_probs=42.1
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc-------CCCCccccCcCCCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI-------NATCPLCRNSRENSS 174 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~-------~~~CP~CR~~~~~~~ 174 (207)
.++..|+||++.|.+.. .++ |||.||.+||..|++. ...||+||+++....
T Consensus 10 ~~~~~C~IC~~~~~~p~---~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 10 QEEVTCPICLELLTEPL---SLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCEETTTTEECSSCC---CCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred ccCCCCcCCCcccCCee---ECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 35678999999987643 466 9999999999999976 568999999987543
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=92.67 Aligned_cols=50 Identities=22% Similarity=0.601 Sum_probs=41.8
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENSS 174 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~ 174 (207)
...|+||++.|.++ +..++ |||.||..||..|+..+..||+||+++....
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChhh
Confidence 56899999998753 33335 9999999999999998899999999987543
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.30 E-value=7.1e-13 Score=98.07 Aligned_cols=54 Identities=31% Similarity=0.710 Sum_probs=45.0
Q ss_pred CCCcccccCccCCCC----CceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCCCC
Q 044489 121 NDSTCPICLCEYHPK----ETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENSSV 175 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~----~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~~ 175 (207)
+..+|+||++.|.+. .....++ |||.||..||++|++.+++||+||+++..+.+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 467899999998653 2335666 99999999999999999999999999876543
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.28 E-value=2.6e-12 Score=92.42 Aligned_cols=50 Identities=24% Similarity=0.561 Sum_probs=42.3
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
++..|+||++.|.+ .+..++ |||.||..||..|++.+..||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 36789999999864 344446 999999999999999899999999998754
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3.8e-12 Score=81.00 Aligned_cols=42 Identities=31% Similarity=0.862 Sum_probs=35.2
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHh---hcCCCCccc
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWL---KINATCPLC 166 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl---~~~~~CP~C 166 (207)
+...|+||++.+.+. ..++ |||.||.+||.+|+ +.+..||+|
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 467899999999765 2466 99999999999995 456789998
No 38
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=4.9e-12 Score=82.09 Aligned_cols=43 Identities=35% Similarity=0.722 Sum_probs=35.7
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhh---cCCCCccc
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLK---INATCPLC 166 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~---~~~~CP~C 166 (207)
.++..|+||++.+.+. ..++ |||.||.+||.+|++ .+..||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3567999999998754 3456 999999999999997 45689998
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.26 E-value=1.4e-11 Score=83.72 Aligned_cols=56 Identities=20% Similarity=0.506 Sum_probs=44.0
Q ss_pred CCCCcccccCccCCCCCc-eeecCCCCCcccHHHHHHHh-hcCCCCccccCcCCCCCCC
Q 044489 120 PNDSTCPICLCEYHPKET-LRSIPKCNHYFHAICIDEWL-KINATCPLCRNSRENSSVV 176 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~-v~~lp~C~H~FH~~CI~~Wl-~~~~~CP~CR~~~~~~~~~ 176 (207)
.++.+|+||++.+...+. +..++ |||.||..|+..++ ..+..||+||+++....+.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 456799999999865543 22244 99999999999998 4467899999999876664
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.25 E-value=6.8e-12 Score=92.41 Aligned_cols=48 Identities=23% Similarity=0.467 Sum_probs=40.0
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcC-CCCccccCcCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKIN-ATCPLCRNSRENS 173 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~-~~CP~CR~~~~~~ 173 (207)
+..|+||++.|.++ ..++ |||.||..||..|+..+ ..||+||+++...
T Consensus 52 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 100 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGRS 100 (124)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCCC
Confidence 46899999998754 3456 99999999999999754 4999999999763
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.23 E-value=3.9e-12 Score=98.24 Aligned_cols=48 Identities=38% Similarity=0.708 Sum_probs=40.4
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc-CCCCccccCcCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI-NATCPLCRNSREN 172 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~~~~ 172 (207)
...|+||++.|.+ .+..++ |||.||..||..|++. +..||+||+++..
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4689999999875 344446 9999999999999976 7789999999854
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=7.8e-12 Score=90.13 Aligned_cols=52 Identities=33% Similarity=0.679 Sum_probs=42.1
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCC---CCccccCcCCCCCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINA---TCPLCRNSRENSSVVT 177 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~---~CP~CR~~~~~~~~~~ 177 (207)
...|+||++.+.+.. .++ |||.||..||..|+..+. .||+||+++....+..
T Consensus 21 ~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (112)
T 1jm7_A 21 ILECPICLELIKEPV---STK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE 75 (112)
T ss_dssp HTSCSSSCCCCSSCC---BCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBC
T ss_pred CCCCcccChhhcCeE---ECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCc
Confidence 458999999986553 356 999999999999997654 8999999987665443
No 43
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.21 E-value=1.3e-11 Score=86.07 Aligned_cols=49 Identities=29% Similarity=0.602 Sum_probs=39.8
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcC--CCCccccCcCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKIN--ATCPLCRNSRE 171 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~--~~CP~CR~~~~ 171 (207)
.++..|+||++.|.++ + .++.|||.||..||..|+..+ ..||+||+++.
T Consensus 11 ~~~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA--V-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC--E-ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc--e-ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4568999999998754 2 454599999999999999543 58999999973
No 44
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.18 E-value=8.6e-12 Score=81.54 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=40.2
Q ss_pred CCCCcccccCccCCCCCcee-ecCCCCCc-ccHHHHHHHhhcCCCCccccCcCC
Q 044489 120 PNDSTCPICLCEYHPKETLR-SIPKCNHY-FHAICIDEWLKINATCPLCRNSRE 171 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~-~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~~~ 171 (207)
.++.+|.||++.+.+. +. .+| |||. |+.+|+..|.+.+..||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4567899999986443 32 237 9999 899999999988899999999885
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.17 E-value=9.9e-12 Score=90.83 Aligned_cols=52 Identities=25% Similarity=0.575 Sum_probs=42.2
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCC-CCccccCcCCCCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINA-TCPLCRNSRENSSV 175 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~-~CP~CR~~~~~~~~ 175 (207)
.+...|+||++.+.++ ..++ |||.||..||..|++.+. +||+||+++....+
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 68 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 68 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhc
Confidence 3467999999998754 3466 999999999999996654 99999999876543
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.15 E-value=2e-11 Score=93.07 Aligned_cols=49 Identities=20% Similarity=0.457 Sum_probs=40.9
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCC-CCccccCcCCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINA-TCPLCRNSRENSS 174 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~-~CP~CR~~~~~~~ 174 (207)
...|+||++.|.++ + .++ |||.||..||..|+.... .||+||+++....
T Consensus 78 ~~~C~IC~~~~~~p--v-~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 127 (150)
T 1z6u_A 78 SFMCVCCQELVYQP--V-TTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQNY 127 (150)
T ss_dssp HTBCTTTSSBCSSE--E-ECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTC
T ss_pred CCEeecCChhhcCC--E-EcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCCC
Confidence 46899999998654 2 366 999999999999997654 8999999997763
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.15 E-value=1.5e-11 Score=89.50 Aligned_cols=53 Identities=30% Similarity=0.656 Sum_probs=43.3
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc-CCCCccccCcCCCCCCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI-NATCPLCRNSRENSSVVTP 178 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~~~~~~~~~~ 178 (207)
+..|+||++.+.++ + .++ |||.||..||..|++. +.+||+||+++....+..+
T Consensus 23 ~~~C~IC~~~~~~p--~-~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 23 SISCQICEHILADP--V-ETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76 (116)
T ss_dssp HTBCTTTCSBCSSE--E-ECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred CCCCCCCCcHhcCc--E-EcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence 56899999998654 3 366 9999999999999976 7799999999877655443
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.11 E-value=4e-11 Score=85.31 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=44.9
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCCCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENSSVV 176 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~~~ 176 (207)
.....|+||++-|.++ | +++ |||.|+..||..|+..+.+||+||+++....+.
T Consensus 27 p~~~~CpI~~~~m~dP--V-~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~ 79 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP--V-RLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESMLE 79 (100)
T ss_dssp STTTBCTTTCSBCSSE--E-EET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSE
T ss_pred cHhhCCcCccCcccCC--e-ECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhce
Confidence 3578999999998765 3 466 999999999999999889999999998775544
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.11 E-value=7.7e-12 Score=90.88 Aligned_cols=48 Identities=25% Similarity=0.672 Sum_probs=40.0
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc-CCCCccccCcCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI-NATCPLCRNSREN 172 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~~~~ 172 (207)
++..|+||++.|.+. ..++ |||.||..||..|+.. +..||+||+++..
T Consensus 14 ~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 357899999998754 3456 9999999999999965 6789999999853
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.08 E-value=8.4e-11 Score=81.10 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=44.4
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCCCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENSSVV 176 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~~~ 176 (207)
..+..|+||++-|.++ | +++ |||.|+..||..|+..+.+||+||+++....+.
T Consensus 12 p~~~~CpI~~~~m~dP--V-~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~ 64 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP--V-RLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESMLE 64 (85)
T ss_dssp CTTTBCTTTCSBCSSE--E-ECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCE
T ss_pred chheECcccCchhcCC--e-ECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHhcc
Confidence 3578999999998765 2 466 999999999999998889999999998765443
No 51
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.08 E-value=2.7e-11 Score=102.61 Aligned_cols=55 Identities=27% Similarity=0.666 Sum_probs=41.9
Q ss_pred CCCCCcccccCccCCCCCce----eecCCCCCcccHHHHHHHhhcC-----------CCCccccCcCCCC
Q 044489 119 KPNDSTCPICLCEYHPKETL----RSIPKCNHYFHAICIDEWLKIN-----------ATCPLCRNSRENS 173 (207)
Q Consensus 119 ~~~~~~C~ICL~~~~~~~~v----~~lp~C~H~FH~~CI~~Wl~~~-----------~~CP~CR~~~~~~ 173 (207)
+....+|+||++.+.++..+ -..++|+|.||..||.+||++. .+||.||+++..+
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 34678999999998873322 2233599999999999999642 4699999998643
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.07 E-value=6.7e-11 Score=102.45 Aligned_cols=51 Identities=24% Similarity=0.666 Sum_probs=42.4
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhh-cCCCCccccCcCCCCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLK-INATCPLCRNSRENSSVV 176 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~-~~~~CP~CR~~~~~~~~~ 176 (207)
..+|+||++.+.+ ...+| |||.||..||..|+. .+.+||+||+++.....+
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 4689999998844 45677 999999999999997 788999999998765443
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=4.6e-11 Score=75.87 Aligned_cols=46 Identities=22% Similarity=0.525 Sum_probs=38.1
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSREN 172 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~ 172 (207)
.+...|+||++.|.+. +.++ |||.||..||..| ...||+||+++..
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeec
Confidence 3567899999999765 3576 9999999999874 6789999998754
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.06 E-value=1.7e-10 Score=81.69 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=44.8
Q ss_pred CCCcccccCccCCCCCceeecCCCC-CcccHHHHHHHhhcCCCCccccCcCCCCCCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCN-HYFHAICIDEWLKINATCPLCRNSRENSSVVT 177 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~-H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~~~~ 177 (207)
++..|+||++-|.++ | +++ || |.|+..||..|+..+.+||+||+++....+.+
T Consensus 21 ~~~~CpI~~~~m~dP--V-~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~p 74 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP--V-VLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRP 74 (98)
T ss_dssp TTTBCTTTCSBCSSE--E-ECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEE
T ss_pred HhcCCcCccccccCC--e-ECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceE
Confidence 468999999998765 3 456 99 99999999999988889999999998765543
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.05 E-value=4.9e-11 Score=77.68 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=39.4
Q ss_pred CCCcccccCccCCCCCceeecCCCCCc-ccHHHHHHHhhcCCCCccccCcCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHY-FHAICIDEWLKINATCPLCRNSRE 171 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~~~ 171 (207)
...+|.||++...+.. +..+| |||. |+.+|+..|.+.+..||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4578999999754331 22237 9998 999999999988899999999985
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.04 E-value=5.6e-11 Score=89.62 Aligned_cols=48 Identities=17% Similarity=0.475 Sum_probs=40.0
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCC-CCccccCcCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINA-TCPLCRNSREN 172 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~-~CP~CR~~~~~ 172 (207)
+...|+||++.+.++ + .++ |||.||..||..|++.+. .||+||+++..
T Consensus 30 ~~~~C~IC~~~~~~p--v-~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 30 AKYLCSACRNVLRRP--F-QAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGGBCTTTCSBCSSE--E-ECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCcCCCCCChhhcCc--E-ECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 467899999998766 3 355 999999999999997554 89999998743
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=9.6e-11 Score=85.41 Aligned_cols=49 Identities=18% Similarity=0.516 Sum_probs=40.4
Q ss_pred CCcccccCccCCCCCceeec-CCCCCcccHHHHHHHhhcCCCCccccCcCCCCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSI-PKCNHYFHAICIDEWLKINATCPLCRNSRENSSVV 176 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~l-p~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~~~ 176 (207)
...|+||++.|.++ + .+ + |||.||..||..|+. ..||+||+++....+.
T Consensus 22 ~~~C~IC~~~~~~p--v-~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~ 71 (117)
T 1jm7_B 22 LLRCSRCTNILREP--V-CLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLK 71 (117)
T ss_dssp TTSCSSSCSCCSSC--B-CCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCC
T ss_pred CCCCCCCChHhhCc--c-EeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcccccc
Confidence 57899999998755 3 34 5 999999999999998 8899999998654443
No 58
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.99 E-value=4.1e-10 Score=72.57 Aligned_cols=48 Identities=25% Similarity=0.558 Sum_probs=37.4
Q ss_pred CCCCcccccCccCCCCCceeecCCCC--C---cccHHHHHHHhh--cCCCCccccCcCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCN--H---YFHAICIDEWLK--INATCPLCRNSRE 171 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~--H---~FH~~CI~~Wl~--~~~~CP~CR~~~~ 171 (207)
.+...|.||+++. ++.+ ++| |. | .||.+||.+|+. .+.+||+||.++.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567899999984 3334 577 65 4 999999999994 3678999999874
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.91 E-value=4.5e-10 Score=75.30 Aligned_cols=43 Identities=23% Similarity=0.632 Sum_probs=36.3
Q ss_pred CCcccccCccCCCCCceeecCCCCCc-ccHHHHHHHhhcCCCCccccCcCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHY-FHAICIDEWLKINATCPLCRNSREN 172 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~~~~ 172 (207)
+..|+||++.+.+ ...+| |||. ||.+|+..| ..||+||+++..
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 4689999998754 34567 9999 999999998 889999999864
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=2.5e-09 Score=70.59 Aligned_cols=49 Identities=24% Similarity=0.575 Sum_probs=38.5
Q ss_pred CCCCCcccccCccCCCCCceeecCCCCCc-ccHHHHHHHhhcCCCCccccCcCCCCCC
Q 044489 119 KPNDSTCPICLCEYHPKETLRSIPKCNHY-FHAICIDEWLKINATCPLCRNSRENSSV 175 (207)
Q Consensus 119 ~~~~~~C~ICL~~~~~~~~v~~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~~~~~~~ 175 (207)
..+...|.||++... .+..+| |||. |+.+|+.. ...||+||+++.....
T Consensus 12 ~~~~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 12 EENSKDCVVCQNGTV---NWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQESFA 61 (68)
T ss_dssp CCCSSCCSSSSSSCC---CCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCEEC
T ss_pred CCCCCCCCCcCcCCC---CEEEEC-CCChhhhHHHHhc----CCCCCCCCcchhceEE
Confidence 345678999998754 355677 9999 99999984 5789999999865433
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.87 E-value=5.8e-10 Score=86.29 Aligned_cols=51 Identities=25% Similarity=0.610 Sum_probs=41.9
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc-CCCCccccCcCCCCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI-NATCPLCRNSRENSSV 175 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~~~~~~~ 175 (207)
+...|+||++.+.++ + .++ |||.||..||.+|++. +..||+||+++....+
T Consensus 17 ~~~~C~IC~~~~~~p--v-~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 68 (170)
T 3hcs_A 17 SKYECPICLMALREA--V-QTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 68 (170)
T ss_dssp GGGBCTTTCSBCSSE--E-ECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCChhhcCc--E-ECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchhhh
Confidence 467999999998765 3 466 9999999999999965 4599999999876543
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=1.2e-09 Score=76.45 Aligned_cols=51 Identities=24% Similarity=0.712 Sum_probs=41.3
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc--------CCCCcc--ccCc--CCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI--------NATCPL--CRNS--REN 172 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~--------~~~CP~--CR~~--~~~ 172 (207)
+..+|+||++++..++.+...+ |||.||.+|+..+++. ...||. |+.. +..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 4678999999998776666566 9999999999999853 247999 9998 544
No 63
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.85 E-value=1.2e-09 Score=90.25 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=43.3
Q ss_pred CCCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc-CCCCccccCcCCCCCCC
Q 044489 119 KPNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI-NATCPLCRNSRENSSVV 176 (207)
Q Consensus 119 ~~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~~~~~~~~ 176 (207)
......|+||++.|.++ | +++ |||.||..||..|+.. +.+||+||+++....+.
T Consensus 205 ~~~~~~c~i~~~~~~dP--v-~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~ 259 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP--C-ITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI 259 (281)
T ss_dssp CCSTTBCTTTCSBCSSE--E-ECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE
T ss_pred CCcccCCcCcCCHhcCC--e-ECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCc
Confidence 34578999999998755 3 466 9999999999999965 45699999999765543
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=9.1e-10 Score=77.22 Aligned_cols=54 Identities=24% Similarity=0.479 Sum_probs=41.7
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcC------CCCcc--ccCc-CCCCCCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKIN------ATCPL--CRNS-RENSSVVT 177 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~------~~CP~--CR~~-~~~~~~~~ 177 (207)
.+..|+||++.|.++ | +++.|||.|+..||..|+..+ .+||+ |++. +....+.+
T Consensus 6 ~~~~CPI~~~~~~dP--V-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP--V-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp SCCBCTTTCSBCSSE--E-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred cEeECcCcCchhcCC--E-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 467899999998754 4 343499999999999999653 58999 9987 66555443
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=4e-09 Score=70.73 Aligned_cols=44 Identities=23% Similarity=0.585 Sum_probs=35.5
Q ss_pred CCcccccCccCCCCCceeecCCCCCc-ccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHY-FHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
+.+|+||++.+.+. ..+| |||. ||.+|+.. ...||+||+++...
T Consensus 25 ~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 45899999987543 3567 9999 99999964 47899999998653
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.69 E-value=8.7e-09 Score=66.49 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=44.7
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCCCCCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENSSVVTPS 179 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~~~~~~ 179 (207)
...|+||++.+.++ | +++.|||.|.+.||.+|++.+.+||++++++..+.+++..
T Consensus 3 ~~~CpIs~~~m~dP--V-~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRP--V-LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSE--E-EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCC--E-EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence 35799999998754 4 3423999999999999998888899999999887776543
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.65 E-value=8e-09 Score=80.63 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=42.9
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc-CCCCccccCcCCCCCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI-NATCPLCRNSRENSSVV 176 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~~~~~~~~ 176 (207)
.....|+||++-|.++ | +++ |||.|+..||..|+.. +.+||+|+.++....++
T Consensus 104 p~~f~CPI~~elm~DP--V-~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~ 157 (179)
T 2f42_A 104 PDYLCGKISFELMREP--C-ITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLI 157 (179)
T ss_dssp CGGGBCTTTCSBCSSE--E-ECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred cHhhcccCccccCCCC--e-ECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCc
Confidence 4568999999998754 3 456 9999999999999965 45799999998765544
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.62 E-value=1.1e-08 Score=69.31 Aligned_cols=44 Identities=27% Similarity=0.605 Sum_probs=36.0
Q ss_pred CCcccccCccCCCCCceeecCCCCCc-ccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHY-FHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
+..|.||++.+.+ ...+| |||. |+.+|+..| ..||+||+++...
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 4589999987643 45677 9999 999999876 4999999998654
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.51 E-value=4.3e-08 Score=80.41 Aligned_cols=54 Identities=31% Similarity=0.525 Sum_probs=42.8
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcC--CCCcc--ccCcCCCCCCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKIN--ATCPL--CRNSRENSSVVT 177 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~--~~CP~--CR~~~~~~~~~~ 177 (207)
....|+||++.|.++ |+... |||.|++.||..|++.+ ..||+ ||+.+....+..
T Consensus 180 ~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEE
T ss_pred eeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCc
Confidence 467899999998655 54444 99999999999999654 47999 999887665543
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.47 E-value=1.2e-07 Score=66.24 Aligned_cols=46 Identities=30% Similarity=0.470 Sum_probs=37.8
Q ss_pred cccccCccCCCCCceeecCCCCCcccHHHHHHHh-hcCCCCccccCcCCC
Q 044489 124 TCPICLCEYHPKETLRSIPKCNHYFHAICIDEWL-KINATCPLCRNSREN 172 (207)
Q Consensus 124 ~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl-~~~~~CP~CR~~~~~ 172 (207)
-|.+|--. .....|+.| |+|+||.+|+..|. ++.++||+|+.++..
T Consensus 3 fC~~C~~P--i~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLP--IKVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSB--CSEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCC--eEEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47777544 456788898 99999999999998 567899999999854
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.45 E-value=4.1e-08 Score=84.13 Aligned_cols=43 Identities=28% Similarity=0.731 Sum_probs=36.3
Q ss_pred CCcccccCccCCCCCceeecCCCCCc-ccHHHHHHHhhcCCCCccccCcCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHY-FHAICIDEWLKINATCPLCRNSREN 172 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~~~~ 172 (207)
+..|+||++.+.+ ...+| |||. ||..|+..| ..||+||+++..
T Consensus 295 ~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 5789999998753 34567 9999 999999988 789999999854
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.28 E-value=6.4e-07 Score=72.94 Aligned_cols=50 Identities=22% Similarity=0.558 Sum_probs=41.2
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCC--CCccccCcCCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINA--TCPLCRNSRENS 173 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~--~CP~CR~~~~~~ 173 (207)
...+|+||.+-...+.. .++|+|.||..|+..|++.+. .||.|+.+++..
T Consensus 179 ~i~~C~iC~~iv~~g~~---C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEE---CSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCcc---cCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 36789999998887643 335999999999999997654 899999998664
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.17 E-value=0.00055 Score=47.04 Aligned_cols=53 Identities=23% Similarity=0.481 Sum_probs=41.0
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCCCCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENSSVVT 177 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~~~~ 177 (207)
.+-..|.-|+-+ +..-|+ ..+|.+|..|+..-|.....||+|+++++.+-.+.
T Consensus 26 ~G~~nCKsCWf~--~k~LV~---C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~ 78 (99)
T 2ko5_A 26 LGPQFCKSCWFE--NKGLVE---CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPS 78 (99)
T ss_dssp SCCCCCCSSCSC--CSSEEE---CSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTT
T ss_pred cCcccChhhccc--cCCeee---ecchhhHHHHHHHHHhhccCCcccCCcCCcceecC
Confidence 356789999954 444343 24599999999999999999999999997665543
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.48 E-value=0.0043 Score=40.12 Aligned_cols=46 Identities=17% Similarity=0.341 Sum_probs=33.4
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCC----CCccccCcC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINA----TCPLCRNSR 170 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~----~CP~CR~~~ 170 (207)
....|.||.+. ++ +..--.|...||..|++..|.... .||.|+...
T Consensus 11 ~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45689999743 33 333445899999999998885433 799998754
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.23 E-value=0.017 Score=39.94 Aligned_cols=34 Identities=12% Similarity=0.357 Sum_probs=25.1
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHH
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEW 156 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~W 156 (207)
+..|.||++++.......-+. |+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 468999998753333333365 9999999999984
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=94.59 E-value=0.057 Score=36.27 Aligned_cols=35 Identities=23% Similarity=0.588 Sum_probs=23.9
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHH
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEW 156 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~W 156 (207)
..+..|.||- .|..++... ..-|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~-~~t~~~l~p-CRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFP-CRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSS-CSSSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceec-cccccccccHhhcccc
Confidence 3578999995 444443211 1138999999999986
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=93.96 E-value=0.056 Score=34.07 Aligned_cols=47 Identities=19% Similarity=0.588 Sum_probs=32.7
Q ss_pred CCCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc----CCCCccccCc
Q 044489 119 KPNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI----NATCPLCRNS 169 (207)
Q Consensus 119 ~~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~ 169 (207)
...+..|.+|.+. + .+..--.|...||..|+..=+.. .-.||.|++.
T Consensus 8 ~~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4456789999863 3 33333358899999999975532 3379999764
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=91.95 E-value=0.059 Score=33.96 Aligned_cols=47 Identities=23% Similarity=0.479 Sum_probs=31.9
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc----CCCCccccCcC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI----NATCPLCRNSR 170 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~~ 170 (207)
..+..|.+|-+. ++ +..--.|...||..|+..=+.. .-.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 356789999752 33 3333358899999999865533 33699998754
No 79
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=90.54 E-value=0.073 Score=40.99 Aligned_cols=46 Identities=30% Similarity=0.594 Sum_probs=32.9
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc----CCCCccccCcC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI----NATCPLCRNSR 170 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~~ 170 (207)
++..|.+|.+. ++ +...-.|...||..|+..-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46789999843 33 3334458899999999877643 33699998754
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.52 E-value=0.17 Score=30.41 Aligned_cols=44 Identities=27% Similarity=0.603 Sum_probs=29.0
Q ss_pred cccccCccCCCCCceeecCCCCCcccHHHHHHHhhc----CCCCccccC
Q 044489 124 TCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI----NATCPLCRN 168 (207)
Q Consensus 124 ~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~ 168 (207)
.|.||.+.-..+ .+..--.|...||..|++.=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588898653333 33333358899999999754432 236999975
No 81
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.51 E-value=0.25 Score=33.51 Aligned_cols=48 Identities=23% Similarity=0.470 Sum_probs=33.4
Q ss_pred CCCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc----CCCCccccCcC
Q 044489 119 KPNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI----NATCPLCRNSR 170 (207)
Q Consensus 119 ~~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~~ 170 (207)
..++..|.+|.+. ++ +..--.|.-.||..|+++=+.. .-.||.|+...
T Consensus 22 d~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 22 DDSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 4456789999864 33 3333358899999999776643 23699998654
No 82
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=90.27 E-value=0.11 Score=32.77 Aligned_cols=50 Identities=24% Similarity=0.517 Sum_probs=33.6
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhh-----cCCCCccccCc
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLK-----INATCPLCRNS 169 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~-----~~~~CP~CR~~ 169 (207)
.+...|++|...+.++.....--.|..=||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 356679999988754443333334888899999864321 34579999864
No 83
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=89.93 E-value=0.12 Score=33.00 Aligned_cols=46 Identities=26% Similarity=0.571 Sum_probs=31.9
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc----CCCCccccCc
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI----NATCPLCRNS 169 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~ 169 (207)
.++..|.||.+. ++ +..--.|...||..|+..=+.. .-.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 457789999863 33 3333358899999999865532 3369999764
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.64 E-value=0.071 Score=32.90 Aligned_cols=46 Identities=26% Similarity=0.620 Sum_probs=31.0
Q ss_pred CCCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc----CCCCccccC
Q 044489 119 KPNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI----NATCPLCRN 168 (207)
Q Consensus 119 ~~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~ 168 (207)
...+..|.+|.+. ++ +..--.|...||..|+..=+.. .-.||.|++
T Consensus 6 ~~~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SC-CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---Ce-EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456789999864 33 3333358899999999865532 225888864
No 85
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=89.58 E-value=0.09 Score=41.29 Aligned_cols=47 Identities=30% Similarity=0.617 Sum_probs=33.7
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc----CCCCccccCcC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI----NATCPLCRNSR 170 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~~ 170 (207)
.++..|.+|.+. ..+...-.|...||..|+.+-+.. .-.||.|+..-
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 356789999743 334444468899999999877643 23799998754
No 86
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=89.52 E-value=0.75 Score=26.95 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 044489 45 IVIGVGIPGLLCIIGLGCYLCGR 67 (207)
Q Consensus 45 iil~i~i~~~i~~i~i~~~~~~~ 67 (207)
|+.+++.+++++++.+..+++.|
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~R 36 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIK 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhee
Confidence 33333334444444444444443
No 87
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=89.46 E-value=3.5 Score=27.82 Aligned_cols=53 Identities=15% Similarity=0.328 Sum_probs=37.3
Q ss_pred CCCCcccccCccCC---CCCceeecCCCCCcccHHHHHHHh-hcCCCCccccCcCCC
Q 044489 120 PNDSTCPICLCEYH---PKETLRSIPKCNHYFHAICIDEWL-KINATCPLCRNSREN 172 (207)
Q Consensus 120 ~~~~~C~ICL~~~~---~~~~v~~lp~C~H~FH~~CI~~Wl-~~~~~CP~CR~~~~~ 172 (207)
.....|.||=++.. +++...-...|+--.|+.|.+-=. +.+.+||.|+..+..
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 35679999998853 333222222577788999987655 567799999999853
No 88
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=89.17 E-value=0.19 Score=34.07 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=35.7
Q ss_pred CCCCcccccCccC-CCCCceeecCCCCCcccHHHHHHHh--hcCCCCccccCcCCCC
Q 044489 120 PNDSTCPICLCEY-HPKETLRSIPKCNHYFHAICIDEWL--KINATCPLCRNSRENS 173 (207)
Q Consensus 120 ~~~~~C~ICL~~~-~~~~~v~~lp~C~H~FH~~CI~~Wl--~~~~~CP~CR~~~~~~ 173 (207)
.++..|.||.+.- .+.+.+..--.|.-.||..|+..-+ ...-.||.|.......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 3567899998653 2333444444688999999997533 2344799998765443
No 89
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=87.94 E-value=0.26 Score=38.05 Aligned_cols=49 Identities=24% Similarity=0.609 Sum_probs=34.5
Q ss_pred CCcccccCccCCCCCc---eeecCCCCCcccHHHHHH------Hhh-----cCCCCccccCcC
Q 044489 122 DSTCPICLCEYHPKET---LRSIPKCNHYFHAICIDE------WLK-----INATCPLCRNSR 170 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~---v~~lp~C~H~FH~~CI~~------Wl~-----~~~~CP~CR~~~ 170 (207)
+..|+||...|.+++. ....-.|..=||.+|+.- =+. ....||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 3469999999988762 333335889999999732 111 157899998864
No 90
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.85 E-value=0.065 Score=36.40 Aligned_cols=52 Identities=15% Similarity=0.374 Sum_probs=35.4
Q ss_pred CCCcccccCccCCC-CCceeecCCCCCcccHHHHHHHhh--------cCCCCccccCcCCC
Q 044489 121 NDSTCPICLCEYHP-KETLRSIPKCNHYFHAICIDEWLK--------INATCPLCRNSREN 172 (207)
Q Consensus 121 ~~~~C~ICL~~~~~-~~~v~~lp~C~H~FH~~CI~~Wl~--------~~~~CP~CR~~~~~ 172 (207)
.+..|.+|...-.. ++.+..--.|...||..|+..=|. ..-.||.|+.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 35689999875332 234444446899999999986553 23479999876543
No 91
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=87.56 E-value=0.18 Score=35.62 Aligned_cols=46 Identities=26% Similarity=0.503 Sum_probs=30.7
Q ss_pred CcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc----CCCCccccC
Q 044489 123 STCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI----NATCPLCRN 168 (207)
Q Consensus 123 ~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~ 168 (207)
..|.||.+.-.+++.+..--.|...||..|+++=|.. .-.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3688888653333344444458899999999765533 236999975
No 92
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=87.20 E-value=1.1 Score=26.17 Aligned_cols=7 Identities=29% Similarity=0.188 Sum_probs=3.2
Q ss_pred hhHHHHH
Q 044489 45 IVIGVGI 51 (207)
Q Consensus 45 iil~i~i 51 (207)
|+.+++.
T Consensus 13 IA~gVVg 19 (44)
T 2ks1_B 13 IATGMVG 19 (44)
T ss_dssp STHHHHH
T ss_pred EEeehhH
Confidence 4444444
No 93
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=87.07 E-value=0.37 Score=31.25 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=33.4
Q ss_pred CCCCcccccCccC-CCCCceeecCCCCCcccHHHHHHHh--hcCCCCccccCc
Q 044489 120 PNDSTCPICLCEY-HPKETLRSIPKCNHYFHAICIDEWL--KINATCPLCRNS 169 (207)
Q Consensus 120 ~~~~~C~ICL~~~-~~~~~v~~lp~C~H~FH~~CI~~Wl--~~~~~CP~CR~~ 169 (207)
.++..|.||.+.- .+++.+..--.|.-.||..|+..=. +..-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 3567899998653 3334454444688999999997532 223469888653
No 94
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=86.80 E-value=0.26 Score=34.62 Aligned_cols=47 Identities=19% Similarity=0.584 Sum_probs=30.1
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc----CCCCcccc
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI----NATCPLCR 167 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR 167 (207)
.++..|.||.+.-+..+.+ .-..|+..||..|+...+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll-~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQF-FCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSE-ECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCe-ECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3577899998763322223 33359999999999877632 22455553
No 95
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=86.65 E-value=0.16 Score=33.13 Aligned_cols=50 Identities=20% Similarity=0.465 Sum_probs=33.5
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhh----cCCCCccccCcCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLK----INATCPLCRNSRE 171 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~----~~~~CP~CR~~~~ 171 (207)
+...|.||..... ++....--.|.--||..|+..-.. ....||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3456999987653 333333335889999999976543 2447999987654
No 96
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.25 E-value=2.1 Score=27.97 Aligned_cols=48 Identities=21% Similarity=0.445 Sum_probs=31.4
Q ss_pred CCCcccccCccCCCCC-ceeecCCCCCcccHHHHHHHh-----hcCCCCccccCcC
Q 044489 121 NDSTCPICLCEYHPKE-TLRSIPKCNHYFHAICIDEWL-----KINATCPLCRNSR 170 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~-~v~~lp~C~H~FH~~CI~~Wl-----~~~~~CP~CR~~~ 170 (207)
....| ||...+.++. .|.-- .|..=||..|+.--- .....||.|+..-
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECG-LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBT-TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcC-CCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34566 9988775333 34333 488889999985321 1355799998764
No 97
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=85.71 E-value=0.18 Score=31.44 Aligned_cols=46 Identities=26% Similarity=0.626 Sum_probs=31.7
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc----CCCCccccCcC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI----NATCPLCRNSR 170 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~~ 170 (207)
.+..|.+|.+. ++.+ .--.|...||..|+..=+.. .-.||.|....
T Consensus 4 ~~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSCE-ECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcEE-EcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 46789999863 3333 33358899999999865532 33699997654
No 98
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=84.93 E-value=1.4 Score=32.45 Aligned_cols=46 Identities=24% Similarity=0.389 Sum_probs=32.2
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhh-----------cCCCCccccCc
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLK-----------INATCPLCRNS 169 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~-----------~~~~CP~CR~~ 169 (207)
..+..|.+|-+- + ++..--.|-..||..||++=+. ..-.||+|+.+
T Consensus 61 g~~d~C~vC~~G---G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCC---S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCC---C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 356789999853 3 3433335889999999997652 23379999753
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.43 E-value=1.9 Score=30.23 Aligned_cols=47 Identities=23% Similarity=0.474 Sum_probs=29.4
Q ss_pred CCCcccccCccC-----CCCCceeecCCCCCcccHHHHHH------Hh-hcCCCCcccc
Q 044489 121 NDSTCPICLCEY-----HPKETLRSIPKCNHYFHAICIDE------WL-KINATCPLCR 167 (207)
Q Consensus 121 ~~~~C~ICL~~~-----~~~~~v~~lp~C~H~FH~~CI~~------Wl-~~~~~CP~CR 167 (207)
....|.+|+..- ..++++..-..|+..||..|+.. -+ +..-.||-|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 356799998753 12334444446999999999953 22 3334566664
No 100
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=83.80 E-value=1.6 Score=25.54 Aligned_cols=22 Identities=32% Similarity=0.232 Sum_probs=9.1
Q ss_pred hhHHHHH-HHHHHHHHHHHHHHh
Q 044489 45 IVIGVGI-PGLLCIIGLGCYLCG 66 (207)
Q Consensus 45 iil~i~i-~~~i~~i~i~~~~~~ 66 (207)
|+.+++. +++++++.+..+++.
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~ 34 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYV 34 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHHHHHHHHh
Confidence 4555444 333333334434433
No 101
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=83.37 E-value=1.4 Score=29.20 Aligned_cols=39 Identities=13% Similarity=0.337 Sum_probs=28.1
Q ss_pred CCCCCCcccccCccCCCCCceeecCCCCCcccHHHHHHH
Q 044489 118 PKPNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEW 156 (207)
Q Consensus 118 ~~~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~W 156 (207)
++.+...|.+|-..|..-..--.-..||++|+.+|....
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 344567899999998765432233369999999997654
No 102
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=82.25 E-value=1.4 Score=27.97 Aligned_cols=49 Identities=22% Similarity=0.419 Sum_probs=31.7
Q ss_pred CCCCcccccCccCCCCCceeecC-CCCCcccHHHHHHHh------h----cCCCCccccC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIP-KCNHYFHAICIDEWL------K----INATCPLCRN 168 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp-~C~H~FH~~CI~~Wl------~----~~~~CP~CR~ 168 (207)
.....|.+|...+.+++..+.-- .|.--||..|+.--- . ....||.|++
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 34678999999987666544443 588899999983211 1 1346888863
No 103
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=82.22 E-value=2.2 Score=30.90 Aligned_cols=46 Identities=24% Similarity=0.400 Sum_probs=31.4
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHh------h-----cCCCCccccCc
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWL------K-----INATCPLCRNS 169 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl------~-----~~~~CP~CR~~ 169 (207)
..+..|.||-+- -++..--.|-..||.+||.+=+ + ..-.|++|+.+
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 346779999853 3443333588999999999742 1 22479999654
No 104
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=81.96 E-value=0.89 Score=28.60 Aligned_cols=51 Identities=22% Similarity=0.513 Sum_probs=34.6
Q ss_pred CCCCcccccCccCC-CCCceeecCCCCCcccHHHHHHHhh-------cCCCCccccCcC
Q 044489 120 PNDSTCPICLCEYH-PKETLRSIPKCNHYFHAICIDEWLK-------INATCPLCRNSR 170 (207)
Q Consensus 120 ~~~~~C~ICL~~~~-~~~~v~~lp~C~H~FH~~CI~~Wl~-------~~~~CP~CR~~~ 170 (207)
.++..|.||..... ++..+..-..|...||..|+..=+. ..-.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 35678999997643 2344444456899999999886432 234799997643
No 105
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=81.92 E-value=1.9 Score=28.56 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=30.6
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI 159 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~ 159 (207)
.....|.+|.+.+++..-|.--..=+|.||..|-...+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 3467899999999988877522123699999999998854
No 106
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=81.79 E-value=0.69 Score=44.29 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=43.6
Q ss_pred CCCcccccCccCCCCCceeecCCCC-CcccHHHHHHHhhcCCCCccccCcCCCCCCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCN-HYFHAICIDEWLKINATCPLCRNSRENSSVVT 177 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~-H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~~~~ 177 (207)
+...|+|-++-+.++ | ++| -| +.|-..+|.+||.++.+||+=|+++....+++
T Consensus 890 ~~F~cPIs~~lM~DP--V-ilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP--V-ILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTP 943 (968)
T ss_dssp GGGBCTTTCSBCSSE--E-ECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE
T ss_pred HHhCCcchhhHHhCC--e-EcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccc
Confidence 468899999987655 3 466 76 68999999999988999999999998766543
No 107
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.44 E-value=1.7 Score=28.82 Aligned_cols=39 Identities=23% Similarity=0.459 Sum_probs=26.7
Q ss_pred CCCCCCCcccccCccCCCCCceeecCCCCCcccHHHHHH
Q 044489 117 LPKPNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDE 155 (207)
Q Consensus 117 ~~~~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~ 155 (207)
.++.+...|.+|-..|..-..--.-..||++|+..|...
T Consensus 9 ~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred ccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 344556789999999865432222336999999999543
No 108
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=81.17 E-value=0.42 Score=36.94 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=30.7
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc----CCCCccccCcC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI----NATCPLCRNSR 170 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~~ 170 (207)
+..|.+|.+. ++ +...-.|...||..|+..=+.. .-.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4579999854 33 3233358899999999764432 23699998764
No 109
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=80.63 E-value=0.83 Score=31.42 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=30.1
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhh---cCCCCccccC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLK---INATCPLCRN 168 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~---~~~~CP~CR~ 168 (207)
...| ||-.....+..+. --.|.--||..|+..=+. ....||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~-Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMIC-CDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEE-BTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEE-cCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3567 8987665554443 335889999999865332 2347999974
No 110
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=80.26 E-value=1.4 Score=29.20 Aligned_cols=38 Identities=18% Similarity=0.425 Sum_probs=27.2
Q ss_pred CCCCCcccccCccCCCCCceeecCCCCCcccHHHHHHH
Q 044489 119 KPNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEW 156 (207)
Q Consensus 119 ~~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~W 156 (207)
+.+...|.+|-..|..-..--.-..||++|+.+|....
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 44567899999998755432233369999999997653
No 111
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=80.10 E-value=3.4 Score=26.24 Aligned_cols=6 Identities=0% Similarity=-0.252 Sum_probs=2.6
Q ss_pred Ccccch
Q 044489 38 PRVARY 43 (207)
Q Consensus 38 ~~~~~y 43 (207)
...|+.
T Consensus 4 ~~~~p~ 9 (70)
T 2klu_A 4 VPRGSM 9 (70)
T ss_dssp SCCCSS
T ss_pred chhhHH
Confidence 344444
No 112
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=80.02 E-value=0.39 Score=33.57 Aligned_cols=49 Identities=20% Similarity=0.438 Sum_probs=33.7
Q ss_pred CCcccccCccCCCCCceeecC-CCCCcccHHHHHHHh----------hcCCCCccccCcC
Q 044489 122 DSTCPICLCEYHPKETLRSIP-KCNHYFHAICIDEWL----------KINATCPLCRNSR 170 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp-~C~H~FH~~CI~~Wl----------~~~~~CP~CR~~~ 170 (207)
...|.||...+.+......-- .|..=||.+|+.--- .....||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 457999999986655444332 478889999984211 1345799998764
No 113
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.32 E-value=1.1 Score=29.02 Aligned_cols=47 Identities=21% Similarity=0.454 Sum_probs=31.2
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHh---------hcCCCCccccCcC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWL---------KINATCPLCRNSR 170 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl---------~~~~~CP~CR~~~ 170 (207)
...| ||...+..+..|.-- .|..=||..|+.--. .....||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4557 898876544444433 488899999984211 2467899998754
No 114
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=79.20 E-value=1.7 Score=29.24 Aligned_cols=51 Identities=16% Similarity=0.437 Sum_probs=34.0
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHh------hcCCCCccccCcC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWL------KINATCPLCRNSR 170 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl------~~~~~CP~CR~~~ 170 (207)
.+...|.+|...|..-..--.-..||++|+..|...+. +....|-.|-..+
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 34568999999986544333344699999999977653 1223577776554
No 115
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=79.01 E-value=0.33 Score=34.88 Aligned_cols=50 Identities=16% Similarity=0.377 Sum_probs=32.3
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCc
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNS 169 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~ 169 (207)
.....|..|-..|..-..--....||.+||..|..........|-.|..-
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 34568999999986543322344799999999977766556778888654
No 116
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.96 E-value=0.33 Score=33.12 Aligned_cols=48 Identities=21% Similarity=0.445 Sum_probs=31.9
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc----CCCCccccCc
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI----NATCPLCRNS 169 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~ 169 (207)
+...|.||...-.. +.+..--.|...||..|+..=|.. .-.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 45679999875322 233333358899999999754432 3369999764
No 117
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=78.36 E-value=0.87 Score=32.15 Aligned_cols=45 Identities=29% Similarity=0.518 Sum_probs=27.8
Q ss_pred CcccccCccCC------CCCceeecCCCCCcccHHHHHHHh-------hcCCCCcccc
Q 044489 123 STCPICLCEYH------PKETLRSIPKCNHYFHAICIDEWL-------KINATCPLCR 167 (207)
Q Consensus 123 ~~C~ICL~~~~------~~~~v~~lp~C~H~FH~~CI~~Wl-------~~~~~CP~CR 167 (207)
..|.+|+..-. +++.+..-..|+..||..|+.... +..-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 46999987531 122343444599999999997542 2234566663
No 118
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=77.28 E-value=0.36 Score=31.84 Aligned_cols=45 Identities=29% Similarity=0.625 Sum_probs=27.5
Q ss_pred cccccCccCCCCCceeecCCCCCcccHHHHHHHhhc----C-CCCccccCc
Q 044489 124 TCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI----N-ATCPLCRNS 169 (207)
Q Consensus 124 ~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~----~-~~CP~CR~~ 169 (207)
.|.+|-..- +.+.+..--.|...||..|++.=|.. . -.||.|+.+
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 567776543 22333333358899999999876532 2 469999763
No 119
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=76.48 E-value=1.9 Score=30.95 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=26.0
Q ss_pred CCCCCcccccCccCCCCCceeecCCCCCcccHHHHHH
Q 044489 119 KPNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDE 155 (207)
Q Consensus 119 ~~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~ 155 (207)
......|.+|-..|..-..--....||++||..|...
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3345689999999865443223336999999999654
No 120
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=75.96 E-value=3 Score=28.01 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=36.5
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHh-------hcCCCCccccCcCCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWL-------KINATCPLCRNSRENS 173 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl-------~~~~~CP~CR~~~~~~ 173 (207)
.+...|.+|-..|..-..--.-..||++|+.+|..... +....|-.|...+...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhc
Confidence 34568999999987554322333699999999976543 1234688887766443
No 121
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=75.36 E-value=1.7 Score=28.36 Aligned_cols=49 Identities=18% Similarity=0.434 Sum_probs=31.3
Q ss_pred CCCcccccCccCCCCCceeec-CCCCCcccHHHHHHHh---------hcCCCCccccCcC
Q 044489 121 NDSTCPICLCEYHPKETLRSI-PKCNHYFHAICIDEWL---------KINATCPLCRNSR 170 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~l-p~C~H~FH~~CI~~Wl---------~~~~~CP~CR~~~ 170 (207)
....| ||-.....+..|.-- +.|..=||..|+.--- ..+..||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 45678 898875455444322 0388899999985321 1355799998753
No 122
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=74.68 E-value=0.78 Score=34.63 Aligned_cols=48 Identities=19% Similarity=0.544 Sum_probs=32.1
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHh-----hcCCCCccccCc
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWL-----KINATCPLCRNS 169 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl-----~~~~~CP~CR~~ 169 (207)
+...| +|.....++......-.|..-||..|+.--- .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45678 9998765444333333588999999984221 234579999875
No 123
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=73.47 E-value=4 Score=28.48 Aligned_cols=47 Identities=21% Similarity=0.436 Sum_probs=29.8
Q ss_pred CCCCcccccCccCCCCCceeecC--CCCCcccHHHHHHHhhcC----CCCccccCcCCC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIP--KCNHYFHAICIDEWLKIN----ATCPLCRNSREN 172 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp--~C~H~FH~~CI~~Wl~~~----~~CP~CR~~~~~ 172 (207)
.++..|.+|.+ .++ +..-- .|...||..|+. |... -.||.|+-....
T Consensus 13 ~~~~~C~~C~~---~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 13 MHEDYCFQCGD---GGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp SSCSSCTTTCC---CSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCCcCCC---CCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 45678999983 233 32222 377999999998 5432 258877655443
No 124
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=73.06 E-value=13 Score=22.56 Aligned_cols=19 Identities=26% Similarity=0.144 Sum_probs=8.5
Q ss_pred chhhhHHHHHHHHHHHHHH
Q 044489 42 RYGIVIGVGIPGLLCIIGL 60 (207)
Q Consensus 42 ~y~iil~i~i~~~i~~i~i 60 (207)
.|.|+++++..++++++.+
T Consensus 12 ~wiIi~svl~GLllL~li~ 30 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTILV 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445555544444444333
No 125
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=73.03 E-value=2.8 Score=26.97 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=23.9
Q ss_pred CcccccCccCCCCCceeecCCCCCcccHHHHHH
Q 044489 123 STCPICLCEYHPKETLRSIPKCNHYFHAICIDE 155 (207)
Q Consensus 123 ~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~ 155 (207)
..|.+|-..|..-..--.-..||++|+.+|-..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 589999999865433223336999999999653
No 126
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=72.62 E-value=2.2 Score=31.06 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=32.2
Q ss_pred CCCCcccccCccCC-CCCceeecCCCCCcccHHHHHHHhhc----CCCCccccCc
Q 044489 120 PNDSTCPICLCEYH-PKETLRSIPKCNHYFHAICIDEWLKI----NATCPLCRNS 169 (207)
Q Consensus 120 ~~~~~C~ICL~~~~-~~~~v~~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~ 169 (207)
.++..|.+|...|. ....-+.-..|.|.+|..|=..--.+ .-.|=+|++.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 35678999999994 33334455569999999985421111 1148888764
No 127
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=72.43 E-value=4.5 Score=25.95 Aligned_cols=45 Identities=24% Similarity=0.637 Sum_probs=27.6
Q ss_pred CCCcccccCccCCCCCceeecCC--CC-CcccHHHHHHHhhc----CCCCccccCcC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPK--CN-HYFHAICIDEWLKI----NATCPLCRNSR 170 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~--C~-H~FH~~CI~~Wl~~----~~~CP~CR~~~ 170 (207)
+..-| ||-... .++.+. --. |. .-||..|+. |.. +-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~-~g~MI~-CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVS-YGEMIG-CDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCS-CSSEEC-CSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCC-CCCEeE-eeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34567 898753 243222 213 44 589999997 432 34799997753
No 128
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.18 E-value=0.87 Score=29.94 Aligned_cols=46 Identities=22% Similarity=0.519 Sum_probs=29.8
Q ss_pred CcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc-----CCCCccccCc
Q 044489 123 STCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI-----NATCPLCRNS 169 (207)
Q Consensus 123 ~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~-----~~~CP~CR~~ 169 (207)
..|.||...- ++..+..--.|...||..|+++=|.. .-.||.|+.+
T Consensus 27 c~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~d 77 (77)
T 2e6s_A 27 CSCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 77 (77)
T ss_dssp SSCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCCC
T ss_pred CCCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccCc
Confidence 3788998643 23334344458899999999854422 3369988753
No 129
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=72.06 E-value=2.5 Score=26.34 Aligned_cols=42 Identities=24% Similarity=0.540 Sum_probs=30.0
Q ss_pred CcccccCccCCCCCceeecCCCCCcccHHHHHHHh-hcCCCCccc
Q 044489 123 STCPICLCEYHPKETLRSIPKCNHYFHAICIDEWL-KINATCPLC 166 (207)
Q Consensus 123 ~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl-~~~~~CP~C 166 (207)
..|--|...|.+.. +-.-++|++.|+.+| |.+. +.=.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 46999999885432 234667999999999 4444 445589988
No 130
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=71.76 E-value=1.4 Score=26.37 Aligned_cols=44 Identities=18% Similarity=0.427 Sum_probs=27.9
Q ss_pred cccccCccCCCCCceeecC-CCCCcccHHHHHHHh----hcCCCCcccc
Q 044489 124 TCPICLCEYHPKETLRSIP-KCNHYFHAICIDEWL----KINATCPLCR 167 (207)
Q Consensus 124 ~C~ICL~~~~~~~~v~~lp-~C~H~FH~~CI~~Wl----~~~~~CP~CR 167 (207)
.|.+|...+.+++.-..-- .|.-=||..|+.--- ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778988875544333332 377789999974321 3566799885
No 131
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.63 E-value=4.1 Score=27.62 Aligned_cols=45 Identities=24% Similarity=0.637 Sum_probs=27.6
Q ss_pred CCCcccccCccCCCCCceeecCC--CC-CcccHHHHHHHhhc----CCCCccccCcC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPK--CN-HYFHAICIDEWLKI----NATCPLCRNSR 170 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~--C~-H~FH~~CI~~Wl~~----~~~CP~CR~~~ 170 (207)
+..-| ||-... .++.+. --+ |. .-||..|+. |.. +..||.|+..-
T Consensus 35 e~~yC-iC~~~~-~g~MI~-CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVS-YGEMIG-CDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBC-CSCCCC-CSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCC-CCCEeE-ecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34567 998764 243222 113 44 579999997 432 34799998754
No 132
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.43 E-value=3.8 Score=26.65 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=32.4
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENSSV 175 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~~ 175 (207)
....|+-|-..+...+.+.. -+..||.+|+ .|-.|++++.....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~CF--------~C~~C~~~L~~~~~ 57 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSCF--------RCHTCEATLWPGGY 57 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTTC--------BCSSSCCBCCTTSE
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCcC--------EEcCCCCCcCCCce
Confidence 45689999998876666542 5788998884 48889888765543
No 133
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=69.44 E-value=1 Score=28.97 Aligned_cols=45 Identities=29% Similarity=0.615 Sum_probs=28.3
Q ss_pred cccccCccCCCCCceeecCCCCCcccHHHHHHHhhc-----CCCCccccCc
Q 044489 124 TCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI-----NATCPLCRNS 169 (207)
Q Consensus 124 ~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~-----~~~CP~CR~~ 169 (207)
.|.||...- ++..+..--.|...||..|++.=|.. .-.||.|+.+
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 567787542 23333333358899999999854432 3369998753
No 134
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=68.15 E-value=1.1 Score=28.79 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=30.7
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHh----hcCCCCccccCcC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWL----KINATCPLCRNSR 170 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl----~~~~~CP~CR~~~ 170 (207)
...| ||-....+++....--.|..=||..|+.--- .....||.|+..-
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 4568 7987765554333333488889999986421 2345799998754
No 135
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.73 E-value=3.4 Score=26.26 Aligned_cols=42 Identities=24% Similarity=0.495 Sum_probs=32.0
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
....|+.|-+.+..++.+.. -+..||.+|+ .|-.|++++...
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccCCC
Confidence 35689999998887776542 5788998874 499999988654
No 136
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=67.71 E-value=2.8 Score=32.85 Aligned_cols=35 Identities=17% Similarity=0.431 Sum_probs=25.4
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHH
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEW 156 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~W 156 (207)
+..|.+|-..|..-..--....||++||.+|-...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 47999999998654432233469999999996543
No 137
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=67.00 E-value=1.1 Score=31.25 Aligned_cols=45 Identities=20% Similarity=0.499 Sum_probs=29.1
Q ss_pred cccccCccCCCCCceeecCCCCCcccHHHHHHHhhc----CCCCccccCc
Q 044489 124 TCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI----NATCPLCRNS 169 (207)
Q Consensus 124 ~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~ 169 (207)
.|.+|-..-.+ +.+..-..|...||..|+.+=+.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57777655332 334444458999999999865432 3369988664
No 138
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.46 E-value=4.4 Score=26.24 Aligned_cols=41 Identities=22% Similarity=0.474 Sum_probs=31.1
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSREN 172 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~ 172 (207)
....|+-|-+.+.+++.+.. -+..||.+|+ .|-.|++++..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~~ 54 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILTG 54 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcCC
Confidence 45689999998877766553 4688998874 48999998863
No 139
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=65.86 E-value=4.3 Score=34.62 Aligned_cols=48 Identities=25% Similarity=0.457 Sum_probs=30.1
Q ss_pred CcccccCccCCCCCceeecCCCCCc--ccHHHHHHHhh--cCCCCccccCcCCCC
Q 044489 123 STCPICLCEYHPKETLRSIPKCNHY--FHAICIDEWLK--INATCPLCRNSRENS 173 (207)
Q Consensus 123 ~~C~ICL~~~~~~~~v~~lp~C~H~--FH~~CI~~Wl~--~~~~CP~CR~~~~~~ 173 (207)
..|++-...+. ..+|-.. |.|. |-.+=+..... ..-.||+|.+.+...
T Consensus 250 L~CPlS~~ri~--~PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 250 LQCPISYTRMK--YPSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp SBCTTTSSBCS--SEEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred ecCCCcccccc--ccCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 56888776654 4466665 9998 44433333332 234799999987443
No 140
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=65.78 E-value=5.6 Score=31.35 Aligned_cols=49 Identities=14% Similarity=0.387 Sum_probs=32.4
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhh--------cCCCCccccCcC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLK--------INATCPLCRNSR 170 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~--------~~~~CP~CR~~~ 170 (207)
+..|.+|-..|..-..--....||++||..|-..... ..+.|-.|...+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 4689999999875543333446999999999765431 123566665544
No 141
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=65.15 E-value=1.2 Score=31.05 Aligned_cols=23 Identities=30% Similarity=0.804 Sum_probs=15.4
Q ss_pred CCCCcccHHHHHHHhhcCCCCccccCcC
Q 044489 143 KCNHYFHAICIDEWLKINATCPLCRNSR 170 (207)
Q Consensus 143 ~C~H~FH~~CI~~Wl~~~~~CP~CR~~~ 170 (207)
+||+.|. .=+.....||.|+++.
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCc
Confidence 5899881 1123456799999875
No 142
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=64.40 E-value=1.8 Score=34.42 Aligned_cols=46 Identities=28% Similarity=0.611 Sum_probs=26.3
Q ss_pred CcccccCccCCCCCceeecCCCCCcccHHHHHHHhhc-----CCCCccccCc
Q 044489 123 STCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI-----NATCPLCRNS 169 (207)
Q Consensus 123 ~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~-----~~~CP~CR~~ 169 (207)
..|.+|...-. ++.+...-.|...||..|+++=|.. .-.||.|+.+
T Consensus 175 c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 35888876422 2333333358899999999865432 3369999764
No 143
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=64.36 E-value=4.8 Score=34.21 Aligned_cols=48 Identities=21% Similarity=0.447 Sum_probs=30.7
Q ss_pred CcccccCccCCCCCceeecCCCCCc--ccHHHHHHHhhc--CCCCccccCcCCCC
Q 044489 123 STCPICLCEYHPKETLRSIPKCNHY--FHAICIDEWLKI--NATCPLCRNSRENS 173 (207)
Q Consensus 123 ~~C~ICL~~~~~~~~v~~lp~C~H~--FH~~CI~~Wl~~--~~~CP~CR~~~~~~ 173 (207)
..|++-...+. ..+|-.. |.|. |-..=+....++ .-.||+|.+.+...
T Consensus 216 L~CPlS~~ri~--~P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 216 LMCPLGKMRLT--IPCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp SBCTTTCSBCS--SEEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeCCCccceec--cCCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 46888776654 4466665 9998 554443333332 34799999997543
No 144
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=64.12 E-value=19 Score=21.88 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=7.8
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 044489 43 YGIVIGVGIPGLLCIIGL 60 (207)
Q Consensus 43 y~iil~i~i~~~i~~i~i 60 (207)
|.|+++++..++++++.+
T Consensus 10 WiIi~svl~GLLLL~Lii 27 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLI 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 434454444444444333
No 145
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.05 E-value=3.5 Score=25.80 Aligned_cols=42 Identities=19% Similarity=0.360 Sum_probs=29.5
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
...|+-|-+.+...+.+. .. -+..||.+|+ .|-.|++++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL-EY-GGQTWHEHCF--------LCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE-CS-TTCCEETTTC--------BCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccEE-EE-CccccCcccC--------eECCCCCcCCCC
Confidence 457999998887654432 22 5788998774 488898887653
No 146
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.68 E-value=3.8 Score=25.57 Aligned_cols=42 Identities=19% Similarity=0.419 Sum_probs=29.6
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
...|+.|-+.+...+.+... -+..||.+|+ .|-.|++++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCCC
Confidence 34799999888776544322 5688998774 488898887654
No 147
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.99 E-value=4 Score=25.87 Aligned_cols=43 Identities=21% Similarity=0.557 Sum_probs=30.8
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
....|+-|-+.+...+.+... -+..||.+|+ .|-.|++++...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCCC
Confidence 356899999988765554322 5788998774 488898887654
No 148
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.61 E-value=5.4 Score=24.93 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=29.4
Q ss_pred CCcccccCccCCC--CCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 122 DSTCPICLCEYHP--KETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 122 ~~~C~ICL~~~~~--~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
...|+-|-+.+.. ++.+. .. -+..||.+|+ .|-.|++++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~-~a-~~~~wH~~CF--------~C~~C~~~L~~~ 48 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYI-SF-EERQWHNDCF--------NCKKCSLSLVGR 48 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCE-EC-SSCEECTTTC--------BCSSSCCBCTTS
T ss_pred CCCCcCCCccccCCCCcceE-EE-CCcccCcccC--------EeccCCCcCCCC
Confidence 4579999988775 33332 22 6789998884 588999988643
No 149
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=61.55 E-value=2.2 Score=27.19 Aligned_cols=9 Identities=22% Similarity=0.719 Sum_probs=4.4
Q ss_pred CccccCcCC
Q 044489 163 CPLCRNSRE 171 (207)
Q Consensus 163 CP~CR~~~~ 171 (207)
|-.|++++.
T Consensus 30 C~~C~~~L~ 38 (76)
T 1iml_A 30 CEKCGKTLT 38 (76)
T ss_dssp CTTTCCBCC
T ss_pred ccccCccCC
Confidence 555555443
No 150
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=61.22 E-value=2.2 Score=27.16 Aligned_cols=46 Identities=20% Similarity=0.526 Sum_probs=29.7
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHh---hcCCCCccccC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWL---KINATCPLCRN 168 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl---~~~~~CP~CR~ 168 (207)
+...| ||-.....+..|.-- .|..=||..|+.--- .....||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd-~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECT-TTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECC-CCCccccccccCcCcccCCCcEECCCCCC
Confidence 45678 998776533344433 488899999986322 23447999975
No 151
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=60.89 E-value=1.8 Score=37.24 Aligned_cols=51 Identities=14% Similarity=0.313 Sum_probs=0.0
Q ss_pred CCCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhh-------cCCCCccccCcC
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLK-------INATCPLCRNSR 170 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~-------~~~~CP~CR~~~ 170 (207)
.....|.+|-..|..-..-.....||++||..|-..+.. ..+.|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 345789999998864432222336999999999977641 134677776554
No 152
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.69 E-value=5.6 Score=24.80 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=26.2
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRE 171 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~ 171 (207)
...|+.|-+.+...+.+. .. =+..||.+|+ .|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGV-VA-LDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCE-EC-SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEE-EE-CCCeEcccCC--------cccccCCcCC
Confidence 457888887766543322 22 5678887774 4888888874
No 153
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=60.57 E-value=8.4 Score=21.59 Aligned_cols=7 Identities=14% Similarity=0.558 Sum_probs=2.9
Q ss_pred hhhHHHH
Q 044489 44 GIVIGVG 50 (207)
Q Consensus 44 ~iil~i~ 50 (207)
+|+++++
T Consensus 15 GiVvG~v 21 (38)
T 2k1k_A 15 AVIFGLL 21 (38)
T ss_dssp HHHHHHH
T ss_pred eeehHHH
Confidence 3444443
No 154
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=60.16 E-value=3.2 Score=22.96 Aligned_cols=22 Identities=18% Similarity=-0.090 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 044489 45 IVIGVGIPGLLCIIGLGCYLCG 66 (207)
Q Consensus 45 iil~i~i~~~i~~i~i~~~~~~ 66 (207)
|+.+++.+++++++++...++.
T Consensus 10 IaagVvglll~vii~l~~~~~i 31 (35)
T 1iij_A 10 IIATVVGVLLFLILVVVVGILI 31 (35)
T ss_dssp HHHHHHHHHHHHHHTTTTTHHH
T ss_pred eHHHHHHHHHHHHHHHHhheEE
Confidence 5555555444444444444444
No 155
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=59.22 E-value=3.7 Score=28.22 Aligned_cols=12 Identities=33% Similarity=0.874 Sum_probs=10.6
Q ss_pred cccHHHHHHHhh
Q 044489 147 YFHAICIDEWLK 158 (207)
Q Consensus 147 ~FH~~CI~~Wl~ 158 (207)
-||..|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 156
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=59.21 E-value=3.7 Score=28.27 Aligned_cols=12 Identities=25% Similarity=0.858 Sum_probs=10.6
Q ss_pred cccHHHHHHHhh
Q 044489 147 YFHAICIDEWLK 158 (207)
Q Consensus 147 ~FH~~CI~~Wl~ 158 (207)
-||..|+.+|++
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999984
No 157
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=58.64 E-value=0.69 Score=32.66 Aligned_cols=46 Identities=20% Similarity=0.475 Sum_probs=29.5
Q ss_pred cccccCccCCCCCceeecCCCCCcccHHHHHHHhhc----CCCCccccCcC
Q 044489 124 TCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKI----NATCPLCRNSR 170 (207)
Q Consensus 124 ~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~~ 170 (207)
.|.||...-..+ .+..--.|...||..|+..=|.. .-.||.|+...
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 578887653333 33333358899999999864432 23588887644
No 158
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.31 E-value=10 Score=24.88 Aligned_cols=43 Identities=28% Similarity=0.549 Sum_probs=31.5
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENSS 174 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~ 174 (207)
....|+-|-+.+...+.+. . -+..||.+|+ .|-.|++++....
T Consensus 14 ~~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~~~ 56 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLL--A-NQQVFHISCF--------RCSYCNNKLSLGT 56 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEE--C-SSSEEETTTC--------BCTTTCCBCCTTT
T ss_pred CCCcCccCCCccCCceeEE--E-CCCEECCCCC--------eeCCCCCCCCCCC
Confidence 3568999998887666553 2 6788998884 4888888876643
No 159
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=57.68 E-value=7.9 Score=21.71 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=4.6
Q ss_pred hhHHHHHHHHH
Q 044489 45 IVIGVGIPGLL 55 (207)
Q Consensus 45 iil~i~i~~~i 55 (207)
|+.+++..+++
T Consensus 15 I~~~vv~Gv~l 25 (41)
T 2k9y_A 15 VIGGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHHHH
T ss_pred EEeehhHHHHH
Confidence 44444443333
No 160
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=57.61 E-value=25 Score=20.14 Aligned_cols=22 Identities=23% Similarity=0.070 Sum_probs=10.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHH
Q 044489 41 ARYGIVIGVGIPGLLCIIGLGC 62 (207)
Q Consensus 41 ~~y~iil~i~i~~~i~~i~i~~ 62 (207)
+.|.|++++...++++++.+..
T Consensus 9 p~wiIi~s~l~GLllL~li~~~ 30 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLA 30 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555444444444333
No 161
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.29 E-value=5.7 Score=25.48 Aligned_cols=42 Identities=17% Similarity=0.370 Sum_probs=30.6
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
...|+.|-+.+..++.+.. . =+..||.+|+ .|-.|++++...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE-Y-KGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE-C-SSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEE-E-CccccccccC--------chhhCCCccCCC
Confidence 3589999998877665432 2 5788998774 488999888654
No 162
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.24 E-value=9.6 Score=24.40 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=29.2
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
....|+-|-+.+. +..+. . -+..||.+|+ .|-.|++++...
T Consensus 14 ~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPLI--F-KNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCC-SCCCC--C-SSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCCccCCCEec-ceEEE--E-CcceeCCCCC--------EeCCCCCccCCC
Confidence 3568999988876 33332 2 6788998774 589999988754
No 163
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=56.37 E-value=7.6 Score=23.91 Aligned_cols=43 Identities=21% Similarity=0.557 Sum_probs=31.8
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
....|+-|-..+...+.+... =+..||.+|+ .|-.|.+++...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 356899999988777655322 5778998885 588999887654
No 164
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=55.23 E-value=2.6 Score=26.06 Aligned_cols=42 Identities=26% Similarity=0.687 Sum_probs=25.3
Q ss_pred CCcccccCccCCCCCceeecCC--CC-CcccHHHHHHHhhc----CCCCccccC
Q 044489 122 DSTCPICLCEYHPKETLRSIPK--CN-HYFHAICIDEWLKI----NATCPLCRN 168 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~--C~-H~FH~~CI~~Wl~~----~~~CP~CR~ 168 (207)
..-| ||.... .++.+ .--. |. .-||..|+. |.. +-.||.|++
T Consensus 10 ~~~C-~C~~~~-~g~mi-~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YGEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CCCEE-EeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4456 898753 23322 2223 43 579999998 533 336999975
No 165
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.99 E-value=7.5 Score=24.59 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=28.9
Q ss_pred CCcccccCccCCC--CCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 122 DSTCPICLCEYHP--KETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 122 ~~~C~ICL~~~~~--~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
...|+-|-+.+.. ...+. .. -+..||.+|+ .|-.|++++...
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~-~a-~~~~wH~~CF--------~C~~C~~~L~~~ 48 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFI-CF-QDSQWHSECF--------NCGKCSVSLVGK 48 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEE-EE-TTEEEEGGGC--------BCTTTCCBCSSS
T ss_pred CCCCccCCCcccCCCCceeE-EE-CCcccCcccC--------ChhhCCCcCCCC
Confidence 3579999988774 22332 22 6788999884 488898887643
No 166
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=54.81 E-value=6.5 Score=29.23 Aligned_cols=48 Identities=21% Similarity=0.449 Sum_probs=31.3
Q ss_pred CCCcccccCccCCCCC-ceeecCCCCCcccHHHHHHHhhcCC--CCccccCc
Q 044489 121 NDSTCPICLCEYHPKE-TLRSIPKCNHYFHAICIDEWLKINA--TCPLCRNS 169 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~-~v~~lp~C~H~FH~~CI~~Wl~~~~--~CP~CR~~ 169 (207)
++..|++|...|..-. .-+....|.|.+|..|= .|+.... .|-+|++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 4679999999863332 22234469999999996 2443322 47777654
No 167
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=54.55 E-value=1.8 Score=27.50 Aligned_cols=45 Identities=22% Similarity=0.427 Sum_probs=27.1
Q ss_pred CcccccCccCCCCCceeec-CCCCCcccHHHHHHH---hh-----cCCCCccccC
Q 044489 123 STCPICLCEYHPKETLRSI-PKCNHYFHAICIDEW---LK-----INATCPLCRN 168 (207)
Q Consensus 123 ~~C~ICL~~~~~~~~v~~l-p~C~H~FH~~CI~~W---l~-----~~~~CP~CR~ 168 (207)
..| ||-.....+..|.-- ..|..=||..|+--- .. .+..||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 456 897665555544321 137778999997321 01 1457999975
No 168
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=52.93 E-value=7.3 Score=20.54 Aligned_cols=28 Identities=21% Similarity=0.555 Sum_probs=19.8
Q ss_pred CcccccCccCCCCCceeecCCCCCcccHHHH
Q 044489 123 STCPICLCEYHPKETLRSIPKCNHYFHAICI 153 (207)
Q Consensus 123 ~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI 153 (207)
..|+.|-...-..+.+. .=|..||+.|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE---ECCeEecccCC
Confidence 47889988776665544 25788998883
No 169
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=52.20 E-value=3.4 Score=25.80 Aligned_cols=43 Identities=28% Similarity=0.675 Sum_probs=26.2
Q ss_pred CCcccccCccCCCCCceeecCC--CC-CcccHHHHHHHhhc----CCCCccccCc
Q 044489 122 DSTCPICLCEYHPKETLRSIPK--CN-HYFHAICIDEWLKI----NATCPLCRNS 169 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~--C~-H~FH~~CI~~Wl~~----~~~CP~CR~~ 169 (207)
..-| +|-+.. .++.+. --+ |. .-||..|+. |.. +-.||.|++.
T Consensus 11 ~~yC-~C~~~~-~g~MI~-CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMIG-CDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CEET-TTTEEC-CSEEEE-CSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CcEE-ECCCCC-CCCeee-eeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 4456 898753 343222 223 43 789999997 422 3479999763
No 170
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=52.04 E-value=3 Score=26.93 Aligned_cols=41 Identities=22% Similarity=0.547 Sum_probs=30.0
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
...|+.|-+.+..++.+.. -+..||.+|+ .|-.|++++...
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCCCC
Confidence 4689999998876665442 5788998774 488898888654
No 171
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=49.26 E-value=1.4 Score=24.35 Aligned_cols=16 Identities=19% Similarity=0.559 Sum_probs=10.4
Q ss_pred CCcccccCccCCCCCc
Q 044489 122 DSTCPICLCEYHPKET 137 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~ 137 (207)
...|++|+.++...+.
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 4678888777655543
No 172
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=48.82 E-value=18 Score=27.08 Aligned_cols=45 Identities=22% Similarity=0.480 Sum_probs=31.9
Q ss_pred CCCcccccCccCCCCCceeecC--CCCCcccHHHHHHHhhc----------CCCCccccCc
Q 044489 121 NDSTCPICLCEYHPKETLRSIP--KCNHYFHAICIDEWLKI----------NATCPLCRNS 169 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp--~C~H~FH~~CI~~Wl~~----------~~~CP~CR~~ 169 (207)
.+..|.||-+ +.++..-- +|...||.+||+..+.. .-+|=+|.-.
T Consensus 78 ~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 78 YQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp SBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 4678999975 34444433 48899999999999743 2269888643
No 173
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=48.54 E-value=4.2 Score=21.31 Aligned_cols=13 Identities=23% Similarity=0.751 Sum_probs=8.7
Q ss_pred CCCCccccCcCCC
Q 044489 160 NATCPLCRNSREN 172 (207)
Q Consensus 160 ~~~CP~CR~~~~~ 172 (207)
+..||+|+...++
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 3468888876543
No 174
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=48.54 E-value=20 Score=23.33 Aligned_cols=41 Identities=17% Similarity=0.412 Sum_probs=29.4
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
....|+-|-+.+.. ..+. . -+..||.+|+ .|-.|++++...
T Consensus 24 ~~~~C~~C~~~I~~-~~~~--a-~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVVK--A-RDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCS-CCEE--S-SSCEECTTTC--------CCSSSCCCTTTS
T ss_pred cCCCcccCCCEecc-cEEE--E-CCceECccCC--------EecCCCCCCCCC
Confidence 35689999988764 3332 2 6789998884 488999988654
No 175
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.63 E-value=14 Score=23.55 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=28.6
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSREN 172 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~ 172 (207)
....|+-|-+.+.. +.+ .. -+..||.+|+ .|-.|++++..
T Consensus 14 ~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFV--KL-RDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCS-SCE--EC-SSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCCccccCCCCccC-cEE--EE-CcceeCcCcC--------eeCCCCCCCCC
Confidence 35689999887764 333 22 6789998885 48889888753
No 176
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=46.55 E-value=4.4 Score=25.96 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=13.9
Q ss_pred HHHhhcCCCCccccCcCCC
Q 044489 154 DEWLKINATCPLCRNSREN 172 (207)
Q Consensus 154 ~~Wl~~~~~CP~CR~~~~~ 172 (207)
+.||..--.||.|+.++..
T Consensus 2 d~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKL 20 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEE
T ss_pred ChHHHhheeCCCCCCcCeE
Confidence 4566677789999998753
No 177
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=44.90 E-value=7.7 Score=23.69 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=28.0
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSREN 172 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~ 172 (207)
...|+-|-+.+. ++.+ .. -+..||.+|+ .|-.|++++..
T Consensus 5 ~~~C~~C~~~I~-~~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVV--NA-MGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEE--CC-TTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEE--EE-CccccccCcC--------EECCCCCCCCC
Confidence 457999988876 4433 22 5788998774 48899988864
No 178
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=44.55 E-value=4 Score=26.02 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=14.5
Q ss_pred HHHhhcCCCCccccCcCCC
Q 044489 154 DEWLKINATCPLCRNSREN 172 (207)
Q Consensus 154 ~~Wl~~~~~CP~CR~~~~~ 172 (207)
++||..--.||.|+.++..
T Consensus 4 d~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEE
T ss_pred CHHHHHHhCCCCCCCcCeE
Confidence 4567777789999998754
No 179
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=44.27 E-value=19 Score=30.80 Aligned_cols=45 Identities=33% Similarity=0.598 Sum_probs=32.3
Q ss_pred CCCcccccCccCCCCCceeecC--CCCCcccHHHHHHHhh----------cCCCCccccCc
Q 044489 121 NDSTCPICLCEYHPKETLRSIP--KCNHYFHAICIDEWLK----------INATCPLCRNS 169 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp--~C~H~FH~~CI~~Wl~----------~~~~CP~CR~~ 169 (207)
.+..|.+|-+. .++...- .|...||.+||+..+. ..-.|=+|.-.
T Consensus 92 ~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 46789999753 3444433 5889999999999983 23379999755
No 180
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.81 E-value=14 Score=22.75 Aligned_cols=41 Identities=22% Similarity=0.499 Sum_probs=28.6
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
....|+-|-+.+. ++.+.. -+..||.+|+ .|-.|++++...
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 4 GSSGCHQCGEFII-GRVIKA---MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp CSSBCSSSCCBCC-SCCEEE---TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCCcCccCCCEec-ceEEEE---CcccccccCC--------EeCCCCCcCCCC
Confidence 3467999988776 333332 5688998874 588898888654
No 181
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.42 E-value=16 Score=22.40 Aligned_cols=39 Identities=21% Similarity=0.433 Sum_probs=27.0
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSREN 172 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~ 172 (207)
...|+-|-+.+.. +.+.. -+..||.+|+ .|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~ 43 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITY---QDQPWHADCF--------VCVTCSKKLAG 43 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEE---TTEEECTTTT--------BCTTTCCBCTT
T ss_pred cCCCcccCCEeCc-ceEEE---CccccccCcC--------EECCCCCCCCC
Confidence 4578889887753 33332 5688898774 48889888753
No 182
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=42.41 E-value=8.4 Score=26.98 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=20.9
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHh
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWL 157 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl 157 (207)
-..|..|-..+..++..... =+..||..|..+.+
T Consensus 36 CF~C~~C~~~L~~g~~f~~~--~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYLLI--NSDIVCEQDIYEWT 69 (123)
T ss_dssp TCBCTTTCCBCCTTCEEEEC--SSSEEEGGGHHHHH
T ss_pred cCccccCCCCCCCCCcEEee--CCEEEcHHHhHHHh
Confidence 46677777776555433222 46777777776655
No 183
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.79 E-value=14 Score=22.66 Aligned_cols=39 Identities=21% Similarity=0.450 Sum_probs=27.5
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSREN 172 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~ 172 (207)
...|+-|-+.+.. +.+ .. -+..||.+|+ .|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GGV--TY-REQPWHKECF--------VCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCS-SEE--ES-SSSEEETTTS--------BCSSSCCBCTT
T ss_pred CCCCcccCCeecc-ceE--EE-CccccCCCCC--------ccCCCCCcCCc
Confidence 4579999887763 333 22 6788998774 48889888754
No 184
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=41.38 E-value=17 Score=24.14 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=26.5
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSREN 172 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~ 172 (207)
-..|..|-..+....-.. .=+..|+..|..+ .....|..|.++|..
T Consensus 33 CF~C~~C~~~L~~~~~~~---~~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 33 CFRCAKCLHPLANETFVA---KDNKILCNKCTTR--EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TCCCSSSCCCTTSSCCEE---ETTEEECHHHHTT--CCCCBCSSSCCBCCS
T ss_pred CCcccccCCCCCcCeeEC---cCCEEEChhHhhh--hcCCccccCCCcccc
Confidence 356777776664332111 1456677777533 334578888888763
No 185
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=40.63 E-value=28 Score=24.54 Aligned_cols=9 Identities=11% Similarity=-0.031 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 044489 53 GLLCIIGLG 61 (207)
Q Consensus 53 ~~i~~i~i~ 61 (207)
+++++++|+
T Consensus 106 v~iii~iIi 114 (119)
T 2kog_A 106 CAIILIIII 114 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 333333333
No 186
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.59 E-value=13 Score=23.70 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=28.6
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
...|+-|-..+..++.+.. . =+..||.+|+ .|-.|++++...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELF-Y-EDRHFHEGCF--------RCCRCQRSLADE 56 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCC-C-SSCCCBTTTS--------BCTTTCCBCSSC
T ss_pred CCcCccCCCccccCcEEEE-e-CCccccccCC--------eecCCCCccCCC
Confidence 3479999988774343322 1 4788998774 488999888643
No 187
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=40.48 E-value=26 Score=22.12 Aligned_cols=32 Identities=31% Similarity=0.533 Sum_probs=23.8
Q ss_pred CCCCcccccCccCCCCCceeecCCC-CCcccHHHHHHH
Q 044489 120 PNDSTCPICLCEYHPKETLRSIPKC-NHYFHAICIDEW 156 (207)
Q Consensus 120 ~~~~~C~ICL~~~~~~~~v~~lp~C-~H~FH~~CI~~W 156 (207)
.+..-|.||.++ -.++-+. | +-+||..|..+-
T Consensus 6 ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 345679999876 4576665 8 789999996653
No 188
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=40.35 E-value=5.1 Score=24.65 Aligned_cols=42 Identities=29% Similarity=0.695 Sum_probs=26.0
Q ss_pred CCcccccCccCCCCCceeecCC--CC-CcccHHHHHHHhhc----CCCCccccC
Q 044489 122 DSTCPICLCEYHPKETLRSIPK--CN-HYFHAICIDEWLKI----NATCPLCRN 168 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~--C~-H~FH~~CI~~Wl~~----~~~CP~CR~ 168 (207)
..-| ||-+.. .++.+ .--+ |. .-||..|+. |.. +-.||.|++
T Consensus 9 ~~yC-~C~~~~-~g~mi-~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMI-GCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCee-EeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4456 898754 34322 2223 54 589999998 433 337999975
No 189
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=40.02 E-value=5.4 Score=23.70 Aligned_cols=41 Identities=17% Similarity=0.514 Sum_probs=25.5
Q ss_pred ccCccCCCCCceeecCCCCCcccHHHHHHHh---hcCCCCccccC
Q 044489 127 ICLCEYHPKETLRSIPKCNHYFHAICIDEWL---KINATCPLCRN 168 (207)
Q Consensus 127 ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl---~~~~~CP~CR~ 168 (207)
||-.....+..+.-- .|..=||..|+.--- .....||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd-~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECT-TTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcC-CCCccccccccCCCcccCCCcEECcCCCC
Confidence 676655433444433 488889999985322 23457999975
No 190
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=39.04 E-value=9.9 Score=23.45 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=11.3
Q ss_pred cCCCCccccCcCCCCC
Q 044489 159 INATCPLCRNSRENSS 174 (207)
Q Consensus 159 ~~~~CP~CR~~~~~~~ 174 (207)
..+.||.|+..++...
T Consensus 5 ~~k~CP~C~~~Iek~~ 20 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDG 20 (60)
T ss_dssp CCCCCTTTCCCCSSCC
T ss_pred cceECcCCCCeeEeCC
Confidence 3457888888887654
No 191
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.82 E-value=15 Score=23.96 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=29.5
Q ss_pred CCCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
....|+-|-+.+. ++.+. . -+..||.+|+ .|-.|++++...
T Consensus 24 ~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~~ 64 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV--A-LGKSWHPEEF--------NCAHCKNTMAYI 64 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE--E-TTEEECTTTC--------BCSSSCCBCSSS
T ss_pred CCCCCccCCCEec-ceEEE--E-CCccccccCC--------ccCCCCCCCCCC
Confidence 3568999998874 43333 2 6789998874 589999988754
No 192
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=38.40 E-value=17 Score=22.81 Aligned_cols=42 Identities=17% Similarity=0.368 Sum_probs=29.0
Q ss_pred CCcccccCccCCC---CCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 122 DSTCPICLCEYHP---KETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 122 ~~~C~ICL~~~~~---~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
...|+-|-+.+.. ...+. .. =+..||.+|+ .|-.|++++...
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L~~~ 59 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVV-AY-EGQSWHDYCF--------HCKKCSVNLANK 59 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEE-EE-TTEEEETTTC--------BCSSSCCBCTTS
T ss_pred CccCcccCCcccCCCCCceeE-EE-CcceeCcccC--------EehhcCCCCCCC
Confidence 3579999988774 22322 22 5688998874 589999988643
No 193
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=37.08 E-value=21 Score=26.29 Aligned_cols=39 Identities=21% Similarity=0.665 Sum_probs=22.2
Q ss_pred CcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCC
Q 044489 123 STCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRE 171 (207)
Q Consensus 123 ~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~ 171 (207)
..|+.|-+.+...+.+.. . -++.||.+|+ .|-.|++.+.
T Consensus 66 ~~C~~C~~~I~~~~~v~~-a-~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVRR-A-QDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp CBCTTTCCBCCTTSEEEE-E-TTEEEEGGGC--------BCTTTCCBCC
T ss_pred ccccccccccCCCcEEEE-c-CCceEeeCCC--------cCCCCCCCCC
Confidence 356666665554443322 2 4567777664 5667766664
No 194
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=36.94 E-value=8.9 Score=24.61 Aligned_cols=47 Identities=19% Similarity=0.477 Sum_probs=29.1
Q ss_pred cccccCccCCCCCceeecCCCCCcccHHHHHHHhh-----cCCCCccccCcC
Q 044489 124 TCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLK-----INATCPLCRNSR 170 (207)
Q Consensus 124 ~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~-----~~~~CP~CR~~~ 170 (207)
.--||-..+..+.....--.|.-=||..|+.---. ....||.|+..-
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 33489877643333222334888899999953321 345799998753
No 195
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.11 E-value=15 Score=23.42 Aligned_cols=38 Identities=21% Similarity=0.464 Sum_probs=27.0
Q ss_pred CcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 044489 123 STCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSREN 172 (207)
Q Consensus 123 ~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~ 172 (207)
..|+-|-+.+. ++.+. . -+..||.+|+ .|-.|++++..
T Consensus 16 ~~C~~C~~~I~-~~~v~--a-~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--A-LGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--E-TTEEECTTTS--------SCSSSCCCCCS
T ss_pred CcCccccCEec-cceEE--E-CCceeCccCC--------ccccCCCCCCC
Confidence 47999988776 34333 2 5788998774 48888888754
No 196
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=35.70 E-value=11 Score=25.32 Aligned_cols=43 Identities=21% Similarity=0.441 Sum_probs=25.7
Q ss_pred CCCcccccCccCCCCCceeecCCCC---CcccHHHHHHHhh----cCCCCcc-ccC
Q 044489 121 NDSTCPICLCEYHPKETLRSIPKCN---HYFHAICIDEWLK----INATCPL-CRN 168 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~~lp~C~---H~FH~~CI~~Wl~----~~~~CP~-CR~ 168 (207)
+..-| ||-... .++.|. --.|+ .-||..|+. |. ..-.||. |++
T Consensus 25 ~~~yC-iC~~~~-~g~MI~-CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVS-YGPMVA-CDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCC-SSSEEC-CCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCC-CCCEEE-ecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34567 998643 244322 22344 579999986 32 2447999 974
No 197
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=35.70 E-value=3.5 Score=25.24 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=13.2
Q ss_pred HHhhcCCCCccccCcCCC
Q 044489 155 EWLKINATCPLCRNSREN 172 (207)
Q Consensus 155 ~Wl~~~~~CP~CR~~~~~ 172 (207)
+||..--.||.|+.++..
T Consensus 5 ~~lL~iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 5 AGLLEILACPACHAPLEE 22 (56)
T ss_dssp CSCTTSCCCSSSCSCEEE
T ss_pred HHHHhheeCCCCCCccee
Confidence 455566689999998653
No 198
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=35.39 E-value=10 Score=25.99 Aligned_cols=43 Identities=21% Similarity=0.461 Sum_probs=25.8
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
+..|+.|-.+++.... +.+|..|=.. ++....||-|.++++..
T Consensus 32 ~~~CP~Cq~eL~~~g~--------~~hC~~C~~~-f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNG--------HARCRSCGEF-IEMKALCPDCHQPLQVL 74 (101)
T ss_dssp CCBCSSSCSBEEEETT--------EEEETTTCCE-EEEEEECTTTCSBCEEE
T ss_pred cccCccCCCcceecCC--------EEECccccch-hhccccCcchhhHHHHH
Confidence 4689999887654322 2223333221 34456799999988643
No 199
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=34.04 E-value=3 Score=27.32 Aligned_cols=15 Identities=20% Similarity=0.561 Sum_probs=12.9
Q ss_pred CCCCcccHHHHHHHh
Q 044489 143 KCNHYFHAICIDEWL 157 (207)
Q Consensus 143 ~C~H~FH~~CI~~Wl 157 (207)
.|+|.|+..|-..|=
T Consensus 55 ~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 55 GCGFAFCRECKEAYH 69 (80)
T ss_dssp CCSCCEETTTTEECC
T ss_pred CCCCeeccccCcccc
Confidence 599999999988873
No 200
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=33.97 E-value=4.5 Score=25.84 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=12.5
Q ss_pred HHhhcCCCCccccCcCCC
Q 044489 155 EWLKINATCPLCRNSREN 172 (207)
Q Consensus 155 ~Wl~~~~~CP~CR~~~~~ 172 (207)
.||..--.||.|+.++..
T Consensus 3 ~~LL~iL~CP~ck~~L~~ 20 (68)
T 2jr6_A 3 KKFLDILVCPVTKGRLEY 20 (68)
T ss_dssp CSSSCCCBCSSSCCBCEE
T ss_pred hHHhhheECCCCCCcCeE
Confidence 345556679999988753
No 201
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=33.76 E-value=20 Score=25.13 Aligned_cols=39 Identities=21% Similarity=0.498 Sum_probs=29.1
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRE 171 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~ 171 (207)
...|+-|-..+.....+.. -+..||.+|+ .|-.|++++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEccccc--------CcCcCCCccc
Confidence 4689999988765433432 6789998884 5999999885
No 202
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.14 E-value=22 Score=22.36 Aligned_cols=39 Identities=15% Similarity=0.424 Sum_probs=27.3
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSREN 172 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~ 172 (207)
...|+-|-+.+.. +.+ .. =+..||.+|+ .|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~-~~v--~a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 2cuq_A 15 APRCARCSKTLTQ-GGV--TY-RDQPWHRECL--------VCTGCQTPLAG 53 (80)
T ss_dssp SCCCTTTCCCCCS-CCE--ES-SSSEECTTTC--------BCSSSCCBCTT
T ss_pred CCcCCCCCCEecC-cEE--EE-CCchhhhhhC--------CcccCCCcCCC
Confidence 3579999887754 333 23 6788998774 58889888854
No 203
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=31.04 E-value=4.5 Score=25.83 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=11.5
Q ss_pred HhhcCCCCccccCcCCC
Q 044489 156 WLKINATCPLCRNSREN 172 (207)
Q Consensus 156 Wl~~~~~CP~CR~~~~~ 172 (207)
||..--.||.|+.++..
T Consensus 4 ~LL~iL~CP~ck~~L~~ 20 (68)
T 2hf1_A 4 KFLEILVCPLCKGPLVF 20 (68)
T ss_dssp CCEEECBCTTTCCBCEE
T ss_pred HHhhheECCCCCCcCeE
Confidence 44445579999988753
No 204
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=30.80 E-value=16 Score=26.42 Aligned_cols=26 Identities=35% Similarity=0.741 Sum_probs=16.2
Q ss_pred CCcccccCccCCCCC-ceeecCCCCCc
Q 044489 122 DSTCPICLCEYHPKE-TLRSIPKCNHY 147 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~-~v~~lp~C~H~ 147 (207)
-..|+-|-++|...| ..-+.|.|+|-
T Consensus 27 lP~CP~C~seytYeDg~l~vCPeC~hE 53 (138)
T 2akl_A 27 LPPCPQCNSEYTYEDGALLVCPECAHE 53 (138)
T ss_dssp SCCCTTTCCCCCEECSSSEEETTTTEE
T ss_pred CCCCCCCCCcceEecCCeEECCccccc
Confidence 357999999876555 23344555554
No 205
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.97 E-value=73 Score=21.88 Aligned_cols=52 Identities=8% Similarity=0.013 Sum_probs=35.3
Q ss_pred CcccccCccCCC-CCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCCCCC
Q 044489 123 STCPICLCEYHP-KETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENSSVV 176 (207)
Q Consensus 123 ~~C~ICL~~~~~-~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~~~~ 176 (207)
..|+.|-..+.+ +.... . .=+..||..|..+-+..+..|-.|.++|....+.
T Consensus 33 F~C~~C~~~L~~~~~~~~-~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~~ 85 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSY-T-KSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDVM 85 (122)
T ss_dssp HCCSSSCCCTTTSEECCE-E-ETTEEECHHHHHHHHCCCCSSSCSSCCSCCEESS
T ss_pred CCcCCCCCcccccCCeEE-E-ECCeeecHHHHHHHcCCCCccccCCCCcCchheE
Confidence 568888777653 22221 1 2567889999888666555899999999865543
No 206
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=29.77 E-value=30 Score=25.95 Aligned_cols=37 Identities=27% Similarity=0.602 Sum_probs=24.0
Q ss_pred cccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcC
Q 044489 124 TCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSR 170 (207)
Q Consensus 124 ~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~ 170 (207)
.|+.|-..+...+.+.. . -++.||.+|+ .|-.|++++
T Consensus 71 ~C~~C~~~I~~~e~~i~-a-~~~~~H~~CF--------~C~~C~~~L 107 (188)
T 1rut_X 71 ACSACGQSIPASELVMR-A-QGNVYHLKCF--------TCSTCRNRL 107 (188)
T ss_dssp ECTTTCCEECTTSEEEE-E-TTEEECGGGC--------BCTTTCCBC
T ss_pred ccccCCCccccCcEEEE-c-CCCEEeCCCC--------eECCCCCCC
Confidence 69999887765554432 2 5788998884 355555554
No 207
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=29.67 E-value=1e+02 Score=22.05 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 044489 45 IVIGVGIPGLLCIIGLGCYLCG 66 (207)
Q Consensus 45 iil~i~i~~~i~~i~i~~~~~~ 66 (207)
|++.+++..++.+-+++.++..
T Consensus 56 IL~vmgffgff~~GImLsYiRS 77 (138)
T 2k21_A 56 VLMVLGFFGFFTLGIMLSYIRS 77 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHh
Confidence 4444444444444444444444
No 208
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.45 E-value=30 Score=25.89 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=14.5
Q ss_pred ecCCCCCcccHHHHHHHhhcCCCCccccCc
Q 044489 140 SIPKCNHYFHAICIDEWLKINATCPLCRNS 169 (207)
Q Consensus 140 ~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~ 169 (207)
+.+.|||++-. .-...||+|..+
T Consensus 140 ~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 140 ICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp ECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred EeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 34458887652 223389999865
No 209
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=29.37 E-value=4.9 Score=25.83 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=10.6
Q ss_pred HhhcCCCCccccCcCC
Q 044489 156 WLKINATCPLCRNSRE 171 (207)
Q Consensus 156 Wl~~~~~CP~CR~~~~ 171 (207)
||..--.||.|+.++.
T Consensus 4 ~LL~iL~CP~ck~~L~ 19 (70)
T 2js4_A 4 RLLDILVCPVCKGRLE 19 (70)
T ss_dssp CCCCCCBCTTTCCBEE
T ss_pred HHhhheECCCCCCcCE
Confidence 4445557888888764
No 210
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=29.27 E-value=21 Score=18.93 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=13.9
Q ss_pred CCCcccccCccCCCCCcee
Q 044489 121 NDSTCPICLCEYHPKETLR 139 (207)
Q Consensus 121 ~~~~C~ICL~~~~~~~~v~ 139 (207)
.-.+|+.|.+--.+++.-+
T Consensus 8 pfhecalcysitdpgerqr 26 (36)
T 2jyp_A 8 PFHECALCYSITDPGERQR 26 (36)
T ss_dssp TTTCCSSSTTTTTTTCTTC
T ss_pred ccchheeEEeecCcchhhh
Confidence 3468999998777776544
No 211
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=29.25 E-value=20 Score=21.81 Aligned_cols=41 Identities=20% Similarity=0.419 Sum_probs=28.0
Q ss_pred CcccccCccCCCCCceeecCCCCCccc--HHHHHHHhhcCCCCccccCcCCCC
Q 044489 123 STCPICLCEYHPKETLRSIPKCNHYFH--AICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 123 ~~C~ICL~~~~~~~~v~~lp~C~H~FH--~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
..|+-|-+.+..++.... . -+..|| .+|+ .|-.|++++...
T Consensus 3 ~~C~~C~~~I~~~~~~v~-a-~~~~wH~~~~CF--------~C~~C~~~L~~~ 45 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVT-Y-NNFSWHASTECF--------LCSCCSKCLIGQ 45 (65)
T ss_dssp EECTTTSSEECTTSCEEE-E-TTEEEETTTTTS--------BCTTTCCBCTTS
T ss_pred CCCcCCCCeeccCceEEE-E-CCCccCCCCCCE--------ECCCCCCcCCCC
Confidence 368889888776433322 2 578899 8884 588898888543
No 212
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=28.08 E-value=78 Score=19.93 Aligned_cols=22 Identities=41% Similarity=0.750 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 044489 46 VIGVGIPGLLCIIGLGCYLCGR 67 (207)
Q Consensus 46 il~i~i~~~i~~i~i~~~~~~~ 67 (207)
+.++++..++++++|+.++..+
T Consensus 19 igGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTH
T ss_pred ecchhhHHHHHHHHHHHHHcCc
Confidence 4445555555555555555443
No 213
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.38 E-value=21 Score=22.65 Aligned_cols=40 Identities=23% Similarity=0.533 Sum_probs=28.2
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
...|+-|-..+. +..+. . -+..||.+|+ .|-.|++++...
T Consensus 15 ~~~C~~C~~~I~-~~~~~--a-~~~~~H~~CF--------~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPIL-DRILR--A-MGKAYHPGCF--------TCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCC-SCCEE--E-TTEEECTTTC--------BCSSSCCBCTTS
T ss_pred CCccccCCCeec-ceeEE--E-CCccccHHhc--------CcccCCCccCCC
Confidence 467999988876 33332 2 5788998774 589999988643
No 214
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=27.34 E-value=99 Score=19.85 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=5.8
Q ss_pred hhHHHHHHHHHHHHH
Q 044489 45 IVIGVGIPGLLCIIG 59 (207)
Q Consensus 45 iil~i~i~~~i~~i~ 59 (207)
++..+++++.+.+++
T Consensus 14 vvtv~viliavaalg 28 (90)
T 1zza_A 14 VVTVIVILIAIAALG 28 (90)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eEEehhHHHHHHHHH
Confidence 333333334444433
No 215
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=26.35 E-value=15 Score=27.08 Aligned_cols=22 Identities=23% Similarity=0.634 Sum_probs=13.4
Q ss_pred CCCCcccHHHHHHHhhcCCCCccccCcC
Q 044489 143 KCNHYFHAICIDEWLKINATCPLCRNSR 170 (207)
Q Consensus 143 ~C~H~FH~~CI~~Wl~~~~~CP~CR~~~ 170 (207)
.|||.|-.. .....||.|-.++
T Consensus 137 ~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 137 GCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp SSCCEESSC------CGGGBCTTTCCBE
T ss_pred CCCCcccCC------CCCCcCCCCCCcc
Confidence 477776532 2234788887764
No 216
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.34 E-value=28 Score=21.89 Aligned_cols=40 Identities=20% Similarity=0.393 Sum_probs=28.4
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
...|+-|-+.+.. +.+.. -+..||.+|+ .|-.|++++...
T Consensus 15 ~~~C~~C~~~I~~-~~v~a---~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYLSA---MDTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCS-SCEEE---TTEEECTTTC--------BCSSSCCBSCSS
T ss_pred CCccccCCCeecc-eeEEE---CCCeEecCcC--------ChhhCCCCCCCC
Confidence 3579999888764 33332 5678998774 489999988654
No 217
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.86 E-value=38 Score=22.02 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=22.6
Q ss_pred CCCCCcccccCccCCCC-CceeecCCCCCcccHHH
Q 044489 119 KPNDSTCPICLCEYHPK-ETLRSIPKCNHYFHAIC 152 (207)
Q Consensus 119 ~~~~~~C~ICL~~~~~~-~~v~~lp~C~H~FH~~C 152 (207)
...+..|+.|.+.|-.- +.-..-+.|.|..|.+|
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 34678999999987422 12223446888888877
No 218
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=25.09 E-value=7.6 Score=25.65 Aligned_cols=19 Identities=26% Similarity=0.815 Sum_probs=14.1
Q ss_pred eecCCCCCcccHHHHHHHh
Q 044489 139 RSIPKCNHYFHAICIDEWL 157 (207)
Q Consensus 139 ~~lp~C~H~FH~~CI~~Wl 157 (207)
..-|.|+|.||..|-..|=
T Consensus 44 v~C~~C~~~FC~~C~~~w~ 62 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWE 62 (86)
T ss_dssp EECTTTCCEECSSSCSBCC
T ss_pred eEeCCCCCccccccCCchh
Confidence 3455699999988877773
No 219
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.84 E-value=33 Score=23.41 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=19.3
Q ss_pred CCcccccCccCCC-CCceeecCCCCCcccHHHHHHHhh
Q 044489 122 DSTCPICLCEYHP-KETLRSIPKCNHYFHAICIDEWLK 158 (207)
Q Consensus 122 ~~~C~ICL~~~~~-~~~v~~lp~C~H~FH~~CI~~Wl~ 158 (207)
-..|+.|-..+.. +.... . .=+..||..|-.+-+.
T Consensus 30 CF~C~~C~~~L~~~g~~~~-~-~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 30 CLSCDLCGCRLGEVGRRLY-Y-KLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TCCCSSSCSCCCCSSSCCC-C-BTTBCCCHHHHHHHHT
T ss_pred cCcccccCCchhcCCCeeE-E-ECCeeechHHHHHHhC
Confidence 4667777766653 22211 1 1356777777766443
No 220
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=24.65 E-value=35 Score=22.47 Aligned_cols=14 Identities=29% Similarity=0.731 Sum_probs=8.2
Q ss_pred CcccccCccCCCCC
Q 044489 123 STCPICLCEYHPKE 136 (207)
Q Consensus 123 ~~C~ICL~~~~~~~ 136 (207)
..|+.|-.++....
T Consensus 3 ~~CP~C~~~l~~~~ 16 (81)
T 2jrp_A 3 ITCPVCHHALERNG 16 (81)
T ss_dssp CCCSSSCSCCEECS
T ss_pred CCCCCCCCccccCC
Confidence 45777776654443
No 221
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=24.36 E-value=69 Score=22.05 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=26.3
Q ss_pred CCcccccCccCCC-CCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 044489 122 DSTCPICLCEYHP-KETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSREN 172 (207)
Q Consensus 122 ~~~C~ICL~~~~~-~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~ 172 (207)
-..|..|-..+.. +...... =|..||..|-.+-+.....|..|.++|..
T Consensus 29 CF~C~~C~~~L~~~~~~~~~~--~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRLYYK--LGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TCBCTTTCCBCSSTTCCEEEE--TTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HcccCcCCCccccCCCeEEEE--CCEEeecCchhhhCCCccChhhcCCccCc
Confidence 4566666666643 2222111 35667777766544333367777777654
No 222
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=24.03 E-value=80 Score=21.57 Aligned_cols=46 Identities=13% Similarity=0.157 Sum_probs=29.3
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSREN 172 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~ 172 (207)
-..|..|-..+.... ... .=|..||..|-.+ .....|..|.++|..
T Consensus 30 CF~C~~C~~~L~~~~-f~~--~~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAGEI-YVM--VNDKPVCKPCYVK--NHAVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTTSE-EEE--ETTEEEEHHHHHH--HSCCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCcCE-EEe--ECCEEechHHhCc--CcCccCcccCCcCCc
Confidence 467777777765332 211 1467788888655 345678888888865
No 223
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.68 E-value=43 Score=20.77 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=24.5
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRE 171 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~ 171 (207)
...|+-|-..+.. ..+ . --+..||.+|+ .|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~-~~v--~-a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG-RVL--E-AGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS-CCB--C-CSSCCBCTTTS--------CCSSSCCCCC
T ss_pred cCCcccCCCEecC-eeE--E-eCCCCCCCCcC--------EeCCCCCCCC
Confidence 3468888776654 222 2 26778887773 4777887775
No 224
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=23.31 E-value=44 Score=25.69 Aligned_cols=25 Identities=20% Similarity=0.537 Sum_probs=15.4
Q ss_pred eeecCCCCCcccHHHHHHHhhcCCCCccccCc
Q 044489 138 LRSIPKCNHYFHAICIDEWLKINATCPLCRNS 169 (207)
Q Consensus 138 v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~ 169 (207)
.-+.+.|||++-- ..-..||+|..+
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 3344468888542 122489999875
No 225
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=23.01 E-value=12 Score=25.52 Aligned_cols=18 Identities=17% Similarity=-0.073 Sum_probs=13.6
Q ss_pred HHhhcCCCCccccCcCCC
Q 044489 155 EWLKINATCPLCRNSREN 172 (207)
Q Consensus 155 ~Wl~~~~~CP~CR~~~~~ 172 (207)
.||..--.||.|+.++..
T Consensus 3 ~~LLdILaCP~cK~pL~l 20 (97)
T 2k5r_A 3 RKLLHLLCSPDTRQPLSL 20 (97)
T ss_dssp TTTCSSCCCCTTSSCCEE
T ss_pred hHHhhheECCCCCCcccc
Confidence 456666689999998754
No 226
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=22.76 E-value=23 Score=26.64 Aligned_cols=41 Identities=24% Similarity=0.524 Sum_probs=28.7
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhhcCCCCccccCcCCCC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLKINATCPLCRNSRENS 173 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~~~~~ 173 (207)
...|+.|-..+..++.+.. =+..||.+| ..|-.|++++...
T Consensus 115 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~~ 155 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG---AGKSWHKSC--------FRCAKCGKSLEST 155 (192)
T ss_dssp CEECTTTSCEECSSSCEEE---TTEEECTTT--------CBCTTTCCBCCSS
T ss_pred CCcCCCCCCEecCcEEEec---CCCccchhc--------CCccccCCCCCCC
Confidence 4569999888776665542 567888777 3478888887543
No 227
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=22.55 E-value=27 Score=26.53 Aligned_cols=24 Identities=17% Similarity=0.469 Sum_probs=14.3
Q ss_pred ecCCCCCcccHHHHHHHhhcCCCCccccCc
Q 044489 140 SIPKCNHYFHAICIDEWLKINATCPLCRNS 169 (207)
Q Consensus 140 ~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~ 169 (207)
+.+.|||++--+ .-...||+|..+
T Consensus 157 ~C~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 157 RCRNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp EETTTCCEEEEE------ECCSBCTTTCCB
T ss_pred EECCCCCEeeCC------CCCCCCCCCcCC
Confidence 344588875421 112389999875
No 228
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=22.47 E-value=70 Score=20.54 Aligned_cols=23 Identities=35% Similarity=0.781 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 044489 45 IVIGVGIPGLLCIIGLGCYLCGR 67 (207)
Q Consensus 45 iil~i~i~~~i~~i~i~~~~~~~ 67 (207)
-+.++++..++++++|++++..+
T Consensus 20 RigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 20 RVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred eeccchhHHHHHHHHHHHHHcCc
Confidence 34445555555555555555443
No 229
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=20.98 E-value=1.7e+02 Score=18.58 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 044489 46 VIGVGIPGLLCIIGLGCYLCGR 67 (207)
Q Consensus 46 il~i~i~~~i~~i~i~~~~~~~ 67 (207)
+.++++..++++++|++++..+
T Consensus 18 iGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHcCc
Confidence 3444444455555555544433
No 230
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=20.57 E-value=1.4e+02 Score=20.32 Aligned_cols=28 Identities=36% Similarity=0.745 Sum_probs=18.7
Q ss_pred CCCCcccHHHH---H---HHhhc-----CCCCccccCcC
Q 044489 143 KCNHYFHAICI---D---EWLKI-----NATCPLCRNSR 170 (207)
Q Consensus 143 ~C~H~FH~~CI---~---~Wl~~-----~~~CP~CR~~~ 170 (207)
.|++=||..|+ + .-+.. ...||.|...-
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 38899999996 1 11222 36899997654
No 231
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=20.16 E-value=33 Score=30.28 Aligned_cols=48 Identities=21% Similarity=0.475 Sum_probs=30.1
Q ss_pred CCcccccCccCCCCCceeecCCCCCcccHHHHHHHhh-----cCCCCccccCcC
Q 044489 122 DSTCPICLCEYHPKETLRSIPKCNHYFHAICIDEWLK-----INATCPLCRNSR 170 (207)
Q Consensus 122 ~~~C~ICL~~~~~~~~v~~lp~C~H~FH~~CI~~Wl~-----~~~~CP~CR~~~ 170 (207)
...| ||-..+..+......-.|.-=||..|+.---. ....||.|+..-
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 3445 99887653333323334888899999853211 235799998653
Done!