Your job contains 1 sequence.
>044490
SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL
GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE
RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL
SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS
APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE
LPDDITYAHIKACLVMENCGISPEVIPPSQKKGNTDELPSKASETWHAEEPHEVEECGKS
MVTFGCAYNNKEMTSLPVTKAEVQELSVGCGDDELCSHKRQRVDCPDGGFTVLEATASSV
LNLLQKHDEG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 044490
(430 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
MGI|MGI:109635 - symbol:Wrn "Werner syndrome homolog (hum... 142 1.4e-13 2
UNIPROTKB|F1NAR0 - symbol:F1NAR0 "Uncharacterized protein... 131 2.6e-12 2
UNIPROTKB|F1RX70 - symbol:WRN "Uncharacterized protein" s... 133 4.7e-11 2
UNIPROTKB|I3LC91 - symbol:WRN "Uncharacterized protein" s... 133 5.5e-11 2
TIGR_CMR|BA_2818 - symbol:BA_2818 "ATP-dependent DNA heli... 175 9.5e-11 2
UNIPROTKB|O93530 - symbol:wrn "Werner syndrome ATP-depend... 127 1.7e-10 2
ZFIN|ZDB-GENE-070702-2 - symbol:wrn "Werner syndrome" spe... 122 9.8e-10 2
RGD|1564788 - symbol:Wrn "Werner syndrome, RecQ helicase-... 118 1.7e-09 2
UNIPROTKB|Q14191 - symbol:WRN "Werner syndrome ATP-depend... 115 1.7e-09 2
UNIPROTKB|E1BEE6 - symbol:WRN "Uncharacterized protein" s... 123 1.9e-09 2
UNIPROTKB|F1PZR3 - symbol:WRN "Uncharacterized protein" s... 114 2.6e-08 2
UNIPROTKB|F1PUF8 - symbol:WRN "Uncharacterized protein" s... 114 2.9e-08 2
UNIPROTKB|F1PZR2 - symbol:WRN "Uncharacterized protein" s... 114 3.2e-08 2
TIGR_CMR|CBU_0472 - symbol:CBU_0472 "ATP-dependent DNA he... 134 1.5e-05 1
TIGR_CMR|GSU_0898 - symbol:GSU_0898 "ATP-dependent DNA he... 126 0.00011 1
DICTYBASE|DDB_G0268512 - symbol:wrn "Werner syndrome prot... 127 0.00019 1
UNIPROTKB|Q9KVF0 - symbol:VC_0196 "ATP-dependent DNA heli... 83 0.00085 2
TIGR_CMR|VC_0196 - symbol:VC_0196 "ATP-dependent DNA heli... 83 0.00085 2
>MGI|MGI:109635 [details] [associations]
symbol:Wrn "Werner syndrome homolog (human)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000403
"Y-form DNA binding" evidence=ISO] [GO:0000405 "bubble DNA binding"
evidence=ISO] [GO:0000723 "telomere maintenance"
evidence=ISO;IGI;IMP] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=ISO] [GO:0001302 "replicative cell aging"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=ISO;IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO;IMP] [GO:0006260
"DNA replication" evidence=ISO;IMP] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=ISO] [GO:0006979 "response to oxidative
stress" evidence=ISO] [GO:0007569 "cell aging" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO;IDA] [GO:0009267 "cellular
response to starvation" evidence=ISO] [GO:0009378 "four-way
junction helicase activity" evidence=ISO] [GO:0010225 "response to
UV-C" evidence=ISO] [GO:0010259 "multicellular organismal aging"
evidence=ISO;IGI] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030145 "manganese
ion binding" evidence=ISO] [GO:0031297 "replication fork
processing" evidence=ISO] [GO:0032066 "nucleolus to nucleoplasm
transport" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0040009 "regulation of growth rate" evidence=IMP] [GO:0042803
"protein homodimerization activity" evidence=ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0043138 "3'-5'
DNA helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051345 "positive regulation of hydrolase
activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0071480 "cellular response to gamma radiation"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00474 SMART:SM00490 SMART:SM00956 MGI:MGI:109635
GO:GO:0005524 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145 GO:GO:0006310
GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408
GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000723 eggNOG:COG0514
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0032066 KO:K10900 CTD:7486
HOGENOM:HOG000146447 HOVERGEN:HBG000325 OMA:GIEGDQW
OrthoDB:EOG4DNF3J EMBL:D86527 EMBL:D86526 EMBL:AF091215
EMBL:AF091216 EMBL:AF241636 EMBL:AC153789 EMBL:AC115809
EMBL:BC050921 EMBL:BC060700 IPI:IPI00113830 PIR:T17452 PIR:T30247
RefSeq:NP_001116294.1 RefSeq:NP_035851.3 UniGene:Mm.228805 PDB:2E6L
PDB:2E6M PDBsum:2E6L PDBsum:2E6M ProteinModelPortal:O09053
SMR:O09053 DIP:DIP-27642N STRING:O09053 PhosphoSite:O09053
PaxDb:O09053 PRIDE:O09053 Ensembl:ENSMUST00000033990
Ensembl:ENSMUST00000033991 GeneID:22427 KEGG:mmu:22427
InParanoid:Q80YP9 EvolutionaryTrace:O09053 NextBio:302865
Bgee:O09053 CleanEx:MM_WRN Genevestigator:O09053
GermOnline:ENSMUSG00000031583 Uniprot:O09053
Length = 1401
Score = 142 (55.0 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKD-VY-RTVSVSQQGKQYLGSARPDHQPPL 71
L G GK+ + +WWKTL++ LI+ G+L E K+ Y +T S++++G+++LG A P L
Sbjct: 968 LFGAGKEQAESWWKTLSHHLIAEGFLVEVPKENKYIKTCSLTKKGRKWLGEASSQSPPSL 1027
Query: 72 LLTFNGEM 79
LL N EM
Sbjct: 1028 LLQANEEM 1035
Score = 122 (48.0 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 63/266 (23%), Positives = 106/266 (39%)
Query: 97 SSATLENE-GFSEADMQ--LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKA 153
SS+ LE E D + LY L+E R+K A P L ++ + +A RP+T
Sbjct: 1102 SSSPLEPAISAQELDARTGLYARLVEARQKHANKMDVPPAILATNKVLLDMAKMRPTTVE 1161
Query: 154 RLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLD--GKVGEHTAFTRKLHVVVNTRTK 211
+ IDGV++ LL+ I+H Q ++ D H K +
Sbjct: 1162 NMKQIDGVSEGKAALLAP-LLEVIKHFCQVTSVQTDLLSSAKPHKE-QEKSQEMEKKDCS 1219
Query: 212 LTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEV 271
L + + ++ E + + IA R P+ + +L +AV G+ ++ R
Sbjct: 1220 LPQSVAVTYTLFQEKKMPLHSIAE--NRLLPLTAAGM--HLAQAVKAGYPLDMER----A 1271
Query: 272 GLTDEIFSAIQEAISKVGCKD---KLKPIKNELPDDI-TYAHIKACLVMENCGISPEVIP 327
GLT E + I + I K+K I+ +P+++ TY A ++++ G P
Sbjct: 1272 GLTPETWKIIMDVIRNPPINSDMYKVKLIRMLVPENLDTYLIHMAIEILQS-GSDSRTQP 1330
Query: 328 PSQKKGNTDELPSKASETWHAEEPHE 353
P PS A +E E
Sbjct: 1331 PCDSSRKR-RFPSSAESCESCKESKE 1355
>UNIPROTKB|F1NAR0 [details] [associations]
symbol:F1NAR0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000403 "Y-form DNA
binding" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IEA] [GO:0009378 "four-way junction helicase activity"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0010259 "multicellular organismal aging" evidence=IEA]
[GO:0030145 "manganese ion binding" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0032066 "nucleolus
to nucleoplasm transport" evidence=IEA] [GO:0032389 "MutLalpha
complex" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
GO:GO:0032066 OMA:GIEGDQW EMBL:AADN02016143 IPI:IPI01017120
Ensembl:ENSGALT00000016720 Uniprot:F1NAR0
Length = 1367
Score = 131 (51.2 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 56/215 (26%), Positives = 97/215 (45%)
Query: 107 SEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIAL--ARPSTKARLANIDGVNQH 164
+E + LY LL R+K+A P L ++ + ++A RP+T + IDGV++
Sbjct: 1065 NELETALYGKLLTARQKVANEKVIPPAVLATNKILVEMARMRTRPTTVENVKRIDGVSEA 1124
Query: 165 LVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWH 224
T LL I+ Q L D + ++ NT+ L+P+++ + ++
Sbjct: 1125 KA-TMLVLLLAEIKEFCQANGLQTDIFPKPESTDQKETSPWKNTKA-LSPSEHVTYVLFQ 1182
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
E LS++ I+ RS P+ E V +L AV G+ +N R GLT E+ I +
Sbjct: 1183 EKNLSLRTISET--RSLPLTE--VGTHLFRAVKAGYPVNLER----AGLTPEVQQIISDI 1234
Query: 285 ISKVGCKD---KLKPIKNELPDDITYAHIKACLVM 316
I K++ I+ +P I I+ +V+
Sbjct: 1235 IRNPPIDSDTTKIQAIRKLVPAHIELYLIQMAIVL 1269
Score = 121 (47.7 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETI-KDVYRTV-SVSQQGKQ 58
S+++ D ++ K L+G GKD + NWWK+L+ QLI G+L E + + T ++Q+G+
Sbjct: 904 SQRLPD-RYRKHPLYGSGKDWTENWWKSLSQQLIMEGFLREVSGRSKFATTCGLTQKGRN 962
Query: 59 YLGSARPDHQPPLLLTFNGEM 79
+L A P LLL N ++
Sbjct: 963 WLLKAGSASNPSLLLQSNEDL 983
Score = 60 (26.2 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 40/148 (27%), Positives = 64/148 (43%)
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
PP +L N +V+ T + V ++K +G SEA + +LL E K+ +
Sbjct: 1089 PPAVLATNKILVEMARMRTRPTTVENVKRI-----DGVSEAKATMLVLLLAEIKEFCQAN 1143
Query: 129 GTAPYALCG-DQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLS 187
G + T +K +TKA L+ + V V+ +L ++R +S+ +L
Sbjct: 1144 GLQTDIFPKPESTDQKETSPWKNTKA-LSPSEHVTY--VLFQEKNL--SLRTISETRSLP 1198
Query: 188 LDGKVGEHTAFTRKLHVVVNT-RTKLTP 214
L +VG H K VN R LTP
Sbjct: 1199 LT-EVGTHLFRAVKAGYPVNLERAGLTP 1225
>UNIPROTKB|F1RX70 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:FP102088 EMBL:FP565873
Ensembl:ENSSSCT00000017248 Uniprot:F1RX70
Length = 1409
Score = 133 (51.9 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 62/252 (24%), Positives = 114/252 (45%)
Query: 108 EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVI 167
E +LY L+E R+K A P L ++ + +A RP+T + IDGV++ +
Sbjct: 1122 ETQTELYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAM 1181
Query: 168 THGDHLLQTIRHLSQ----KLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMW 223
LL+ I+H Q + N+ K E +K V+ + + L+ ++ + ++
Sbjct: 1182 MLAP-LLEVIKHFCQINSVQTNVFSSAKPQEEQ---KKSLVMKDKASLLSQSEAITYSLF 1237
Query: 224 HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQE 283
E + ++ IA R P+ + +L +AV G+ ++ D GLT E+ I +
Sbjct: 1238 QEKKMCLKSIAEE--RILPLT--AIGMHLSQAVKAGYPLDM----DRAGLTPEVQKIIAD 1289
Query: 284 AISKVGCK---DKLKPIKNELPDDI-TYA-HIKACLVMENCG--ISPEVIPPSQKK---G 333
I +K+K I+ +P+ I TY H+ ++ ++C I + S KK
Sbjct: 1290 VIRNPPINSDINKIKLIRKYVPESIDTYLIHMAIEILEKDCDNRIQCQSACDSSKKRYFS 1349
Query: 334 NTDELPSKASET 345
N++E S A +
Sbjct: 1350 NSEESCSDAKRS 1361
Score = 107 (42.7 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 10 DKLLLH---GLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQYLGSAR 64
DK H G GKDH+ +WWK + QL++ G+L + + +++++G+ +L A+
Sbjct: 965 DKYRSHSFFGTGKDHTESWWKAFSRQLVTEGFLVDVPGQSKFVKICTLTKKGRNWLAKAK 1024
Query: 65 PDHQPPLLLTFNGEM 79
+ L+L N E+
Sbjct: 1025 TESPQRLILQANEEL 1039
>UNIPROTKB|I3LC91 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
"MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0030145 "manganese ion binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:FP102088 EMBL:FP565873
Ensembl:ENSSSCT00000022344 Uniprot:I3LC91
Length = 1507
Score = 133 (51.9 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 62/252 (24%), Positives = 114/252 (45%)
Query: 108 EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVI 167
E +LY L+E R+K A P L ++ + +A RP+T + IDGV++ +
Sbjct: 1220 ETQTELYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAM 1279
Query: 168 THGDHLLQTIRHLSQ----KLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMW 223
LL+ I+H Q + N+ K E +K V+ + + L+ ++ + ++
Sbjct: 1280 MLAP-LLEVIKHFCQINSVQTNVFSSAKPQEEQ---KKSLVMKDKASLLSQSEAITYSLF 1335
Query: 224 HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQE 283
E + ++ IA R P+ + +L +AV G+ ++ D GLT E+ I +
Sbjct: 1336 QEKKMCLKSIAEE--RILPLT--AIGMHLSQAVKAGYPLDM----DRAGLTPEVQKIIAD 1387
Query: 284 AISKVGCK---DKLKPIKNELPDDI-TYA-HIKACLVMENCG--ISPEVIPPSQKK---G 333
I +K+K I+ +P+ I TY H+ ++ ++C I + S KK
Sbjct: 1388 VIRNPPINSDINKIKLIRKYVPESIDTYLIHMAIEILEKDCDNRIQCQSACDSSKKRYFS 1447
Query: 334 NTDELPSKASET 345
N++E S A +
Sbjct: 1448 NSEESCSDAKRS 1459
Score = 107 (42.7 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 10 DKLLLH---GLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQYLGSAR 64
DK H G GKDH+ +WWK + QL++ G+L + + +++++G+ +L A+
Sbjct: 1064 DKYRSHSFFGTGKDHTESWWKAFSRQLVTEGFLVDVPGQSKFVKICTLTKKGRNWLAKAK 1123
Query: 65 PDHQPPLLLTFNGEM 79
+ L+L N E+
Sbjct: 1124 TESPQRLILQANEEL 1138
>TIGR_CMR|BA_2818 [details] [associations]
symbol:BA_2818 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0009378 "four-way junction helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614
GO:GO:0009432 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK RefSeq:NP_845165.1
RefSeq:YP_019461.1 RefSeq:YP_028886.1 ProteinModelPortal:Q81PI6
DNASU:1085972 EnsemblBacteria:EBBACT00000011651
EnsemblBacteria:EBBACT00000017455 EnsemblBacteria:EBBACT00000023670
GeneID:1085972 GeneID:2814571 GeneID:2847794 KEGG:ban:BA_2818
KEGG:bar:GBAA_2818 KEGG:bat:BAS2627 ProtClustDB:CLSK916814
BioCyc:BANT260799:GJAJ-2691-MONOMER
BioCyc:BANT261594:GJ7F-2786-MONOMER Uniprot:Q81PI6
Length = 705
Score = 175 (66.7 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 47/192 (24%), Positives = 90/192 (46%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLS 229
G H LQ ++H ++ N + + RK + + L YE +K G+
Sbjct: 575 GSHFLQAVQHFIEE-NPNYAETIKTEVVSERKKSGKASANSHLET--YEMYKQ----GID 627
Query: 230 IQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVG 289
+ +IA G S QT+ ++L+ +G +++W I +A+Q A + G
Sbjct: 628 LDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFVP-AEYEQLIETAVQNA--EGG 680
Query: 290 CKDKLKPIKNEL 301
K + + NE+
Sbjct: 681 LKSIKEQLPNEV 692
Score = 52 (23.4 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV++ F L +GL + S LIS L Y T+ V+++GK+ L
Sbjct: 437 NKKVIEFNFHTLPTYGLLSNRSVKEVSEFIEFLIS-DELIAVEHGTYPTLKVTEKGKEVL 495
>UNIPROTKB|O93530 [details] [associations]
symbol:wrn "Werner syndrome ATP-dependent helicase homolog"
species:8355 "Xenopus laevis" [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS] [GO:0030145
"manganese ion binding" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030145 GO:GO:0006310
SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 KO:K10900 CTD:7486 HOVERGEN:HBG000325
EMBL:AF067418 PIR:T14895 RefSeq:NP_001081838.1 UniGene:Xl.404
ProteinModelPortal:O93530 SMR:O93530 GeneID:398079 KEGG:xla:398079
Xenbase:XB-GENE-992879 Uniprot:O93530
Length = 1436
Score = 127 (49.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 72/269 (26%), Positives = 116/269 (43%)
Query: 108 EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVI 167
E LY L+ R+K+A P L ++ + +A RP+T + +DGV++
Sbjct: 1099 ELQTTLYGRLVVARQKIASERDILPAVLATNKVLVDMAKLRPTTSENMKKLDGVSEAKSA 1158
Query: 168 THGDHLLQTIRHLSQKLNLSLD---GKVG--EHTAFTRKLHVVVNTRTKLTPAKYEAWKM 222
LL+ ++ +L +D G V E T FT + R L ++ ++ +
Sbjct: 1159 MLAP-LLEVVKEFCIANSLKVDVFSGSVSQSESTFFTPR----EQERISLPESQRMSYSL 1213
Query: 223 WHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQ 282
+ E LS++KIA+ S + V +L +A+ G+ + R GLT E+ I
Sbjct: 1214 FQEQNLSLKKIADVRCLSMAV----VGMHLWQALKAGYSFDVQR----AGLTPEMKKLIT 1265
Query: 283 EAISKVGCKDKL---KPIKNELPDDITYAHIKACL-VMENCGIS-----PEVIPPSQKKG 333
AI K L K I+ +P +I I+ + ++E G S PE P+QK
Sbjct: 1266 YAIKKPPINSDLSSFKAIREYVPANIDGYPIRMVISLLEKEGSSGAQGQPEF--PTQKTL 1323
Query: 334 -NTDELPSKASETWHAEEPHEVEECGKSM 361
T+E P S H+V GKSM
Sbjct: 1324 IQTEENPKNVSVQ---NTKHKVT-MGKSM 1348
Score = 108 (43.1 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDV-YRTV-SVSQQGKQ 58
S++V D +F L GKD + +WK LA QLI+ GYL E+ + T+ ++ +G
Sbjct: 934 SQRVPD-RFRNHSLFSSGKDQTEAFWKVLARQLITEGYLQESSGQTKFSTICGLTSKGSN 992
Query: 59 YLGSARPDHQPPLLLTFNGEM 79
+L A + P LLL N E+
Sbjct: 993 WLIKANNEQCPSLLLPSNNEL 1013
>ZFIN|ZDB-GENE-070702-2 [details] [associations]
symbol:wrn "Werner syndrome" species:7955 "Danio
rerio" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00474 SMART:SM00490
SMART:SM00956 ZFIN:ZDB-GENE-070702-2 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:BX537303 IPI:IPI00993584
ProteinModelPortal:E9QGF6 Ensembl:ENSDART00000136531 Uniprot:E9QGF6
Length = 1436
Score = 122 (48.0 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 48/200 (24%), Positives = 94/200 (47%)
Query: 112 QLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGD 171
+LY L+ ER+KLA + P L ++ + ++ RP T + L +DGV++
Sbjct: 1096 ELYGKLVSERQKLASIRDIPPALLATNKILLDMSKLRPCTMSSLKQVDGVSEAKAAMLTP 1155
Query: 172 HLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV----VVNTRTKLTPAKYE-AWKMWHED 226
L+ I Q L +D V ++A + + H VV + + P + ++ +
Sbjct: 1156 -LIDIIAKFCQTHGLQVD--VSSNSASSVQTHSSRESVVGSVAQCLPDSISITYSLFQIE 1212
Query: 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAIS 286
S++++++ RS PI V +LL+A G ++ D GL+ I + I++ +
Sbjct: 1213 HKSLRQVSD--ARSLPIA--VVESHLLQAQKMGCAVD----TDRAGLSTSIMNTIRKNTA 1264
Query: 287 KVGCKDKLKPIKNELPDDIT 306
D K +++ +P+DI+
Sbjct: 1265 GSDLCD-FKAVRSRVPEDIS 1283
Score = 106 (42.4 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 5 VDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTE-TIKDVYRTV-SVSQQGKQYLGS 62
V +F K L G+G+D S WWK L +LI+ YL E T + T+ ++ +G+ +L
Sbjct: 942 VPERFRKHSLFGIGRDVSETWWKALGRELIAEKYLMEVTGHSKFTTLCKITTKGRSWLSK 1001
Query: 63 ARPDHQPPLLLTFNGEM 79
A + LLL N ++
Sbjct: 1002 AEDEKHRQLLLQPNRDL 1018
>RGD|1564788 [details] [associations]
symbol:Wrn "Werner syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
"telomere maintenance" evidence=ISO] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0001302 "replicative cell
aging" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=ISO] [GO:0004527 "exonuclease activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006259 "DNA metabolic
process" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=ISO] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0006979 "response to oxidative stress"
evidence=ISO] [GO:0007569 "cell aging" evidence=ISO] [GO:0008408
"3'-5' exonuclease activity" evidence=IEA;ISO] [GO:0009267
"cellular response to starvation" evidence=ISO] [GO:0009378
"four-way junction helicase activity" evidence=ISO] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0010259 "multicellular
organismal aging" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0030145 "manganese ion binding" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0032066
"nucleolus to nucleoplasm transport" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0040009 "regulation of growth rate"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=ISO] [GO:0043138 "3'-5' DNA helicase activity"
evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0051345 "positive regulation of
hydrolase activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA
binding" evidence=ISO] [GO:0071480 "cellular response to gamma
radiation" evidence=ISO] [GO:0032389 "MutLalpha complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
SMART:SM00490 SMART:SM00956 RGD:1564788 GO:GO:0005524 GO:GO:0005813
GO:GO:0005654 GO:GO:0006979 GO:GO:0005730 GO:GO:0042981
GO:GO:0000287 GO:GO:0006284 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0030145 GO:GO:0006310 GO:GO:0009267
SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345
GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
GO:GO:0032066 IPI:IPI00960063 ProteinModelPortal:F1LTH9
Ensembl:ENSRNOT00000058805 Uniprot:F1LTH9
Length = 1448
Score = 118 (46.6 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQQGKQYLGSARPDHQPPL 71
L G GK+ + +WWK L++ LI+ G+L E K +T S++++G+++LG A P L
Sbjct: 1016 LFGAGKEQAESWWKALSHHLIAEGFLVEVPKQNKFIKTCSLTKKGRKWLGEAILQSPPSL 1075
Query: 72 LLTFNGE 78
+L + E
Sbjct: 1076 VLQADEE 1082
Score = 108 (43.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 65/274 (23%), Positives = 107/274 (39%)
Query: 52 VSQQGKQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFS---- 107
VS + K + + +P G D + E SS K S +++ G S
Sbjct: 1096 VSSETKPHSSNQKPTGSSTQQSNLEGAYSD-KVPEKFSSGSNIPKKSVVMQSPGTSYSSW 1154
Query: 108 -------EADMQ--LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANI 158
E D + LY L+E R+K A P L ++ + +A RP+T + I
Sbjct: 1155 EPVISAQEVDTRTVLYARLVEARQKHANEVDVPPAVLATNKVLLDMAKMRPTTVENVKQI 1214
Query: 159 DGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVG-EHTAFTRKLHVVVNTRTKLTPAKY 217
DGV++ L + I+H Q ++ D + K + N L +
Sbjct: 1215 DGVSEGKAALLAP-LTEVIKHFCQVNSVQTDLFASTKPQEDEEKSQEMENKACSLPQSAA 1273
Query: 218 EAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEI 277
+ ++ E +S+ IA R P+ V +L +AV G ++ R GLT E
Sbjct: 1274 VTYALFQEKKMSLHSIAE--NRLLPLT--AVGMHLAQAVKAGHPLDMER----AGLTPET 1325
Query: 278 FSAIQEAISKVGCKD---KLKPIKNELPDDI-TY 307
I + I K+K I+ +P++I TY
Sbjct: 1326 RKIIMDVIRNPPINSDMYKVKLIRMLVPENIDTY 1359
>UNIPROTKB|Q14191 [details] [associations]
symbol:WRN "Werner syndrome ATP-dependent helicase"
species:9606 "Homo sapiens" [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0040009
"regulation of growth rate" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031297 "replication fork processing" evidence=IMP;IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0007569 "cell aging" evidence=IMP]
[GO:0010259 "multicellular organismal aging" evidence=IMP]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0007568 "aging" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=IDA;IMP]
[GO:0004386 "helicase activity" evidence=IDA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0000731 "DNA synthesis involved
in DNA repair" evidence=IDA] [GO:0010225 "response to UV-C"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0032389 "MutLalpha complex" evidence=IDA] [GO:0000403 "Y-form
DNA binding" evidence=IDA] [GO:0043138 "3'-5' DNA helicase
activity" evidence=IDA] [GO:0000405 "bubble DNA binding"
evidence=IDA] [GO:0009378 "four-way junction helicase activity"
evidence=IDA] [GO:0051880 "G-quadruplex DNA binding" evidence=IDA]
[GO:0006284 "base-excision repair" evidence=IDA] [GO:0051345
"positive regulation of hydrolase activity" evidence=IDA]
[GO:0006979 "response to oxidative stress" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0000287 "magnesium ion
binding" evidence=IDA] [GO:0030145 "manganese ion binding"
evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=IDA]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0071480 "cellular response to gamma
radiation" evidence=IDA] [GO:0004527 "exonuclease activity"
evidence=IDA] [GO:0009267 "cellular response to starvation"
evidence=IDA] [GO:0032066 "nucleolus to nucleoplasm transport"
evidence=IDA] [GO:0042981 "regulation of apoptotic process"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IMP;IDA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00474 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005813 Pathway_Interaction_DB:telomerasepathway
GO:GO:0042803 GO:GO:0005654 GO:GO:0006979 GO:GO:0005730
GO:GO:0042981 GO:GO:0032403 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 GO:GO:0004003 SUPFAM:SSF53098
MIM:114500 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345 GO:GO:0010259
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000723 GO:GO:0010225 GO:GO:0007569 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403
GO:GO:0000731 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
GO:GO:0031297 GO:GO:0043138 GO:GO:0032066 KO:K10900 EMBL:L76937
EMBL:AY818673 EMBL:AF091214 EMBL:AF181897 EMBL:AF181896
EMBL:AY442327 EMBL:AC084736 IPI:IPI00029107 RefSeq:NP_000544.2
UniGene:Hs.632050 PDB:2AXL PDB:2DGZ PDB:2E1E PDB:2E1F PDB:2FBT
PDB:2FBV PDB:2FBX PDB:2FBY PDB:2FC0 PDB:3AAF PDBsum:2AXL
PDBsum:2DGZ PDBsum:2E1E PDBsum:2E1F PDBsum:2FBT PDBsum:2FBV
PDBsum:2FBX PDBsum:2FBY PDBsum:2FC0 PDBsum:3AAF DisProt:DP00443
ProteinModelPortal:Q14191 SMR:Q14191 DIP:DIP-31380N IntAct:Q14191
MINT:MINT-95856 STRING:Q14191 PhosphoSite:Q14191 DMDM:6136393
PaxDb:Q14191 PRIDE:Q14191 Ensembl:ENST00000298139 GeneID:7486
KEGG:hsa:7486 UCSC:uc003xio.4 CTD:7486 GeneCards:GC08P030948
H-InvDB:HIX0007441 HGNC:HGNC:12791 HPA:HPA028661 MIM:277700
MIM:604611 neXtProt:NX_Q14191 Orphanet:902 PharmGKB:PA367
HOGENOM:HOG000146447 HOVERGEN:HBG000325 InParanoid:Q14191
OMA:GIEGDQW OrthoDB:EOG4DNF3J PhylomeDB:Q14191
EvolutionaryTrace:Q14191 GenomeRNAi:7486 NextBio:29326 Bgee:Q14191
CleanEx:HS_WRN Genevestigator:Q14191 GermOnline:ENSG00000165392
Uniprot:Q14191
Length = 1432
Score = 115 (45.5 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 50/205 (24%), Positives = 89/205 (43%)
Query: 108 EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVI 167
E + LY L+E R+K A P L ++ + +A RP+T + IDGV++
Sbjct: 1151 ETQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAA 1210
Query: 168 THGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRT-KLTPAKYEAWKMWHED 226
LL+ I+H Q ++ D +K +V + L+ + + ++ E
Sbjct: 1211 MLAP-LLEVIKHFCQTNSVQTDLFSSTKPQEEQKTSLVAKNKICTLSQSMAITYSLFQEK 1269
Query: 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAIS 286
+ ++ IA R P+ T+ +L +AV G ++ R GLT E+ I + I
Sbjct: 1270 KMPLKSIAE--SRILPL--MTIGMHLSQAVKAGCPLDLER----AGLTPEVQKIIADVIR 1321
Query: 287 KVGCKD---KLKPIKNELPDDI-TY 307
K+ I+ +P++I TY
Sbjct: 1322 NPPVNSDMSKISLIRMLVPENIDTY 1346
Score = 111 (44.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIK--DVYRTVSVSQQGKQ 58
S+++ D Q+ + L G GKD + +WWK + QLI+ G+L E + + +++++G+
Sbjct: 991 SQRLAD-QYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRN 1049
Query: 59 YLGSARPDHQPPLLLTFNGEM 79
+L A + Q L+L N E+
Sbjct: 1050 WLHKANTESQS-LILQANEEL 1069
>UNIPROTKB|E1BEE6 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
"MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0030145 "manganese ion binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:DAAA02060458
EMBL:DAAA02060459 EMBL:DAAA02060460 EMBL:DAAA02060461
EMBL:DAAA02060462 EMBL:DAAA02060463 EMBL:DAAA02060464
EMBL:DAAA02060465 EMBL:DAAA02060466 EMBL:DAAA02060467
EMBL:DAAA02060468 EMBL:DAAA02060469 EMBL:DAAA02060470
EMBL:DAAA02060471 EMBL:DAAA02060472 EMBL:DAAA02060473
EMBL:DAAA02060474 EMBL:DAAA02060475 EMBL:DAAA02060476
EMBL:DAAA02060477 EMBL:DAAA02060478 EMBL:DAAA02060479
EMBL:DAAA02060480 EMBL:DAAA02060481 EMBL:DAAA02060482
EMBL:DAAA02060483 EMBL:DAAA02060484 EMBL:DAAA02060485
EMBL:DAAA02060486 EMBL:DAAA02060487 EMBL:DAAA02060488
EMBL:DAAA02060489 EMBL:DAAA02060490 EMBL:DAAA02060491
EMBL:DAAA02060492 EMBL:DAAA02060493 EMBL:DAAA02060494
IPI:IPI00920936 Ensembl:ENSBTAT00000028778 Uniprot:E1BEE6
Length = 1404
Score = 123 (48.4 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 56/230 (24%), Positives = 100/230 (43%)
Query: 96 KSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARL 155
KSS + + E LY L+ R+K A + P L ++ + +A RP+T +
Sbjct: 1105 KSSEPVISAQEQETQTALYGELVAARQKHANMMDVPPAILATNKILLDMAKMRPTTVENV 1164
Query: 156 ANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVV-NTRTKLTP 214
IDGV++ + LL+ IR Q ++ D K ++V+ N L+P
Sbjct: 1165 KRIDGVSEGKAVMLAP-LLEVIRRFCQINSVQTDLFSSSELQEEEKKNLVLENKANSLSP 1223
Query: 215 AKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLT 274
+ + + E +S++ A R+ P+ V +L +A+ G+ ++ R GLT
Sbjct: 1224 SMAITYFFFQEKKMSLKDTAEK--RTLPLT--AVGMHLSQAMKAGYPVDTER----AGLT 1275
Query: 275 DEIFSAIQEAISKVGCK---DKLKPIKNELPDDI-TYAHIKACLVMENCG 320
EI I + I +K+ I+ +P++I TY ++E G
Sbjct: 1276 PEIQKIIADVIRNPPINSDTNKINLIRIYVPENIDTYLIHMTIKILEKDG 1325
Score = 102 (41.0 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETI-KDVY-RTVSVSQQGKQYLGSARPDHQPPLLL 73
G GKD + WWK L+ QLI G+L E Y + +++++G+ + A+ + P L L
Sbjct: 971 GTGKDRTEKWWKALSRQLIIEGFLAEVPGHSKYVKICTLTEKGRNWFAKAKTESPPRLFL 1030
Query: 74 TFNGEM 79
N ++
Sbjct: 1031 QTNEQL 1036
>UNIPROTKB|F1PZR3 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010395
Uniprot:F1PZR3
Length = 1499
Score = 114 (45.2 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 55/218 (25%), Positives = 96/218 (44%)
Query: 96 KSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARL 155
KSS + + E LY +L+E R+K A P L ++ + ++A RP+T +
Sbjct: 1199 KSSEPVISAEEQETQTVLYGILVEARQKHAGKMDVPPAILATNKILLEMAKMRPTTFENM 1258
Query: 156 ANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVV--NTRTKLT 213
I+GV++ T LL+ I+H Q N+ D + + VV N L+
Sbjct: 1259 KRINGVSEGKA-TMLTPLLEVIKHFCQINNVQSD-LFSSTKPWEEPRNSVVEENETCSLS 1316
Query: 214 PAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGL 273
+ + ++ E +S+ + R P+ V +L +AV G ++ R GL
Sbjct: 1317 QSAAITYSLFQEKKMSLISLTE--DRIMPLT--AVGMHLTQAVKAGCPLDMER----AGL 1368
Query: 274 TDEIFSAIQEAISKVGCK---DKLKPIKNELPDDI-TY 307
T E+ I + I +K+K I+ +P++I TY
Sbjct: 1369 TPEVQKIITDVIRNPPINSDINKIKLIRKLVPENIDTY 1406
Score = 101 (40.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQ 58
S+++ D ++ + L G GKD +WWK L+ QL++ G+L E + R +++++G+
Sbjct: 1050 SQRLED-KYRRHSLFGTGKDQKESWWKALSRQLMAEGFLVEVPGRQKFIRICTLTEKGRC 1108
Query: 59 YLGSARPDHQPPLLLTFNGEM 79
+L A + L L N E+
Sbjct: 1109 WLHEANREFPKKLKLEANEEL 1129
>UNIPROTKB|F1PUF8 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000037050
OMA:TERICLM Uniprot:F1PUF8
Length = 1574
Score = 114 (45.2 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 55/218 (25%), Positives = 96/218 (44%)
Query: 96 KSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARL 155
KSS + + E LY +L+E R+K A P L ++ + ++A RP+T +
Sbjct: 1231 KSSEPVISAEEQETQTVLYGILVEARQKHAGKMDVPPAILATNKILLEMAKMRPTTFENM 1290
Query: 156 ANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVV--NTRTKLT 213
I+GV++ T LL+ I+H Q N+ D + + VV N L+
Sbjct: 1291 KRINGVSEGKA-TMLTPLLEVIKHFCQINNVQSD-LFSSTKPWEEPRNSVVEENETCSLS 1348
Query: 214 PAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGL 273
+ + ++ E +S+ + R P+ V +L +AV G ++ R GL
Sbjct: 1349 QSAAITYSLFQEKKMSLISLTE--DRIMPLT--AVGMHLTQAVKAGCPLDMER----AGL 1400
Query: 274 TDEIFSAIQEAISKVGCK---DKLKPIKNELPDDI-TY 307
T E+ I + I +K+K I+ +P++I TY
Sbjct: 1401 TPEVQKIITDVIRNPPINSDINKIKLIRKLVPENIDTY 1438
Score = 101 (40.6 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQ 58
S+++ D ++ + L G GKD +WWK L+ QL++ G+L E + R +++++G+
Sbjct: 1082 SQRLED-KYRRHSLFGTGKDQKESWWKALSRQLMAEGFLVEVPGRQKFIRICTLTEKGRC 1140
Query: 59 YLGSARPDHQPPLLLTFNGEM 79
+L A + L L N E+
Sbjct: 1141 WLHEANREFPKKLKLEANEEL 1161
>UNIPROTKB|F1PZR2 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010396
Uniprot:F1PZR2
Length = 1336
Score = 114 (45.2 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 55/218 (25%), Positives = 96/218 (44%)
Query: 96 KSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARL 155
KSS + + E LY +L+E R+K A P L ++ + ++A RP+T +
Sbjct: 1118 KSSEPVISAEEQETQTVLYGILVEARQKHAGKMDVPPAILATNKILLEMAKMRPTTFENM 1177
Query: 156 ANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVV--NTRTKLT 213
I+GV++ T LL+ I+H Q N+ D + + VV N L+
Sbjct: 1178 KRINGVSEGKA-TMLTPLLEVIKHFCQINNVQSD-LFSSTKPWEEPRNSVVEENETCSLS 1235
Query: 214 PAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGL 273
+ + ++ E +S+ + R P+ V +L +AV G ++ R GL
Sbjct: 1236 QSAAITYSLFQEKKMSLISLTE--DRIMPLT--AVGMHLTQAVKAGCPLDMER----AGL 1287
Query: 274 TDEIFSAIQEAISKVGCK---DKLKPIKNELPDDI-TY 307
T E+ I + I +K+K I+ +P++I TY
Sbjct: 1288 TPEVQKIITDVIRNPPINSDINKIKLIRKLVPENIDTY 1325
Score = 99 (39.9 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQ 58
S+++ D ++ + L G GKD +WWK L+ QL++ G+L E + R +++++G+
Sbjct: 970 SQRLED-KYRRHSLFGTGKDQKESWWKALSRQLMAEGFLVEVPGRQKFIRICTLTEKGRC 1028
Query: 59 YLGSARPDHQPPLLLTFNGE 78
+L A + L L N E
Sbjct: 1029 WLHEANREFPKKLKLEANEE 1048
>TIGR_CMR|CBU_0472 [details] [associations]
symbol:CBU_0472 "ATP-dependent DNA helicase RecQ"
species:227377 "Coxiella burnetii RSA 493" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_819507.1 ProteinModelPortal:Q83E59 SMR:Q83E59
GeneID:1208356 KEGG:cbu:CBU_0472 PATRIC:17929635
ProtClustDB:CLSK914091 BioCyc:CBUR227377:GJ7S-469-MONOMER
Uniprot:Q83E59
Length = 601
Score = 134 (52.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 49/180 (27%), Positives = 80/180 (44%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
++ A D+L +G+GK+ S N W ++ QLI GYL + + + Y + ++ L
Sbjct: 438 RIKRAGHDRLSTYGIGKELSQNEWYSVFRQLIHLGYLEQDLAN-YSILRLTPLAHSILRG 496
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
+ L+L A+ E NV K A N S D L+ L E RK
Sbjct: 497 -----KETLIL--------AKPREKY--NVLKKKYKAAKANSSASPYDAALFEKLRELRK 541
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQ 182
+AR + AP+ + D ++ ++A P + + I+GV Q + +G L IR Q
Sbjct: 542 AIARESRVAPFIIFSDASLVEMASRLPVSDSEFLAINGVGQKKLENYGKLFLHLIREHQQ 601
>TIGR_CMR|GSU_0898 [details] [associations]
symbol:GSU_0898 "ATP-dependent DNA helicase RecQ"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_951954.1 ProteinModelPortal:Q74ER2 SMR:Q74ER2
GeneID:2687381 KEGG:gsu:GSU0898 PATRIC:22024565
ProtClustDB:CLSK828090 BioCyc:GSUL243231:GH27-885-MONOMER
Uniprot:Q74ER2
Length = 603
Score = 126 (49.4 bits), Expect = 0.00011, P = 0.00011
Identities = 44/178 (24%), Positives = 82/178 (46%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S++++ D+L +G+G ++ W ++ QLI GYL + + + Y + ++ + L
Sbjct: 436 SERILALGHDRLSTYGIGASLAAEAWGSIIRQLIHRGYLEQDLAN-YSVLKLTPAARPLL 494
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ L+L + A + E G +AT +E D +L+ L
Sbjct: 495 RG-----EESLVLAKPRLRMAAPKKEKAPRRPG----AATP-----AERDEELFQELRAL 540
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK+LA PY + D T+ ++A RP+T L ++GV + + +G L+ IR
Sbjct: 541 RKRLADDQQVPPYIIFSDATLAEMASLRPTTPEELLRVNGVGERKLGRYGAPFLEAIR 598
>DICTYBASE|DDB_G0268512 [details] [associations]
symbol:wrn "Werner syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 dictyBase:DDB_G0268512 GO:GO:0005524
GenomeReviews:CM000150_GR GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000003 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_001732947.1 ProteinModelPortal:B0G0Y4
EnsemblProtists:DDB0238429 GeneID:8616084 KEGG:ddi:DDB_G0268512
OMA:FLFNKTE Uniprot:B0G0Y4
Length = 1136
Score = 127 (49.8 bits), Expect = 0.00019, P = 0.00019
Identities = 32/116 (27%), Positives = 66/116 (56%)
Query: 83 EEHETISSNVGDLKSSATLENEGFS---EAD---MQLYHMLLEERKKLARVTGTAPYALC 136
++ + ++++ + S L+ E F+ E D M+L+ +L+E RK+L+ + T + +
Sbjct: 871 QQSQKLNNDNSNNNESKLLKIEAFTKPNEIDPIVMKLFKILIEFRKELSMFSETPTFLIF 930
Query: 137 GDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKV 192
+ T++KIA RP T L+ I+G++ V+ HG +L+ ++ S + LS+ K+
Sbjct: 931 PENTLRKIAQFRPLTIDELSQIEGMDHKKVLDHGQSILKKVQEFSIQEGLSITPKL 986
>UNIPROTKB|Q9KVF0 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 83 (34.3 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D +L+ L + RK +A G PY + D T+ +A P++ + ++GV Q + +
Sbjct: 545 DKKLFAKLRKLRKSIADDEGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKY 604
Query: 170 GDHLLQTIR-HLS 181
D L I+ HL+
Sbjct: 605 ADPFLDLIQEHLT 617
Score = 81 (33.6 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ + L
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEARPLL 514
>TIGR_CMR|VC_0196 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 83 (34.3 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D +L+ L + RK +A G PY + D T+ +A P++ + ++GV Q + +
Sbjct: 545 DKKLFAKLRKLRKSIADDEGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKY 604
Query: 170 GDHLLQTIR-HLS 181
D L I+ HL+
Sbjct: 605 ADPFLDLIQEHLT 617
Score = 81 (33.6 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ + L
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEARPLL 514
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 430 430 0.00086 118 3 11 23 0.45 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 620 (66 KB)
Total size of DFA: 288 KB (2150 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.84u 0.18s 41.02t Elapsed: 00:00:02
Total cpu time: 40.85u 0.18s 41.03t Elapsed: 00:00:02
Start: Mon May 20 15:55:45 2013 End: Mon May 20 15:55:47 2013