BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044490
(430 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359478480|ref|XP_002275696.2| PREDICTED: Werner syndrome ATP-dependent helicase-like [Vitis
vinifera]
Length = 913
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 263/439 (59%), Positives = 322/439 (73%), Gaps = 11/439 (2%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
SK+++DA+FDKL LHGLGKDHSSNWWK LAYQLISYGYL E++KDVY+TVSVSQ+G Q+L
Sbjct: 436 SKRILDAKFDKLPLHGLGKDHSSNWWKALAYQLISYGYLMESVKDVYKTVSVSQKGAQFL 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S+ P HQP L+L EMVD EEHE S G+LK AT E EGFSE + QLYHMLL+E
Sbjct: 496 SSSTPAHQPKLVLQVTNEMVDDEEHEGTSGKFGELKGLATFEYEGFSETEGQLYHMLLDE 555
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R K AR GTAPYA+CG++TIKKIAL RPSTKARLANIDGVNQH + T+GDH LQ+I+HL
Sbjct: 556 RMKFARGIGTAPYAICGNETIKKIALIRPSTKARLANIDGVNQHFLTTYGDHFLQSIQHL 615
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
SQ LNL LDG A RK+ V N + KLTPAKYEAWKMW EDGLSI+K+AN+P RS
Sbjct: 616 SQALNLPLDGDASMQAAVVRKMQPVPNQQRKLTPAKYEAWKMWQEDGLSIEKVANFPSRS 675
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
APIK+QTV++YLL A EGF I+WTRLCDEVGLT E+FS I+ AI+KVG +DKLKP+K E
Sbjct: 676 APIKDQTVLEYLLGAAQEGFAIDWTRLCDEVGLTREMFSDIEAAITKVGSRDKLKPVKIE 735
Query: 301 LPDDITYAHIKACLVMENCGISPEVIPPSQKKGNT-DELPSKASE----TWH---AEEPH 352
P+ I+YAHIK CL +++CG+S EVIPP T DELPSKASE T H P
Sbjct: 736 SPEYISYAHIKVCLTLQDCGMSKEVIPPGNHNTLTADELPSKASEASMDTMHKCLIRGPC 795
Query: 353 EVEECGKSMVTFGCAYNNKEMTSLPVTKAEVQELSVGCGDDELCSHKRQRVDCPDGGFTV 412
EVE +++ C N+ TS+P T ++ G D+ KRQ++D P+ +
Sbjct: 796 EVETSVDNIIA-SCCLENEVTTSIPFT-VDLDMHPPGVHDEIFSLRKRQKIDEPEEESLI 853
Query: 413 L-EATASSVLNLLQKHDEG 430
+ EAT SS+L+LL+ +D+G
Sbjct: 854 MQEATESSILDLLRNYDDG 872
>gi|224124876|ref|XP_002319444.1| predicted protein [Populus trichocarpa]
gi|222857820|gb|EEE95367.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 254/436 (58%), Positives = 306/436 (70%), Gaps = 31/436 (7%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+++A FDKL HGLGKD+SSNWWK+LAYQLIS+GYL ET +D Y+ V VS +GKQY+
Sbjct: 403 AKKILNAHFDKLPFHGLGKDYSSNWWKSLAYQLISHGYLMETFRDTYKFVRVSPKGKQYI 462
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
SARPDHQP L+L EMV+ EE + + VG+L S ATLE E SEA+ +++HMLL+E
Sbjct: 463 QSARPDHQPALILPLTDEMVEDEEQQCTTGGVGELNSMATLECEQLSEAEARIFHMLLDE 522
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R KLA+ GTAPYA+CGDQTIKKIAL RPSTKARLANIDGVNQHLV+ HGD+LLQTIR L
Sbjct: 523 RTKLAKSIGTAPYAVCGDQTIKKIALVRPSTKARLANIDGVNQHLVVRHGDYLLQTIRDL 582
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
SQ+LNLSLDG TA TRK + V N + KLTPAK +AWKMWHE+GL IQKIAN+PGRS
Sbjct: 583 SQELNLSLDGGANLQTANTRKANQVPNHK-KLTPAKLDAWKMWHENGLPIQKIANFPGRS 641
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
APIKE +VV+YLLEA G I WTRLC EVGL+ E S I+ AISKVG ++KLKPIK+E
Sbjct: 642 APIKEGSVVEYLLEAAQGGLQIEWTRLCGEVGLSRERLSEIEGAISKVGSREKLKPIKDE 701
Query: 301 LPDDITYAHIKACLVMENCGISPEVIPPSQ-KKGNTDELPSKAS-----ETWHAEEPHEV 354
LP+DI+YAHIK CL M+NCG PEV PPS DE S T + HEV
Sbjct: 702 LPEDISYAHIKICLAMQNCGFLPEVTPPSHLDTSKADEFVESESGMVSTGTSCLDTVHEV 761
Query: 355 EECGKSMVTFGCAYNNKEMTSLPVTKAEVQELSVGCGDDELCSHKRQRVDCPDGGFTVLE 414
E K M T C+ +N+E +SL +VD P+ T LE
Sbjct: 762 EISVKIMATHCCSDHNEETSSL------------------------MKVDIPEESTTALE 797
Query: 415 ATASSVLNLLQKHDEG 430
AT SS+L+ L+ +DEG
Sbjct: 798 ATESSILDWLKNYDEG 813
>gi|255570869|ref|XP_002526386.1| conserved hypothetical protein [Ricinus communis]
gi|223534248|gb|EEF35962.1| conserved hypothetical protein [Ricinus communis]
Length = 795
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 237/432 (54%), Positives = 298/432 (68%), Gaps = 25/432 (5%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+K+++D FDKL LHGLGK +SSNWWK LA QLI +GYL ETIKDVY+ VSV +G++YL
Sbjct: 346 AKRILDMHFDKLPLHGLGKGYSSNWWKALANQLICHGYLMETIKDVYKFVSVHTKGEKYL 405
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
SARPD+QPPL+L +MVD EE++ + V + S ATL++E F E ++QLY LLEE
Sbjct: 406 SSARPDYQPPLVLPLTDQMVDDEEYQCTTGGVENFNSLATLQSESFLEVEVQLYQKLLEE 465
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R KLAR GTAPYA+CGDQTIK+IAL RPSTKARLANI+GVNQHLV HGD +LQ+IRHL
Sbjct: 466 RIKLARSIGTAPYAICGDQTIKRIALTRPSTKARLANIEGVNQHLVAKHGDRILQSIRHL 525
Query: 181 SQKLNLSLDGKVG-EHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGR 239
+Q+LNLSLDG+ + T TRK+ N + L+PAK+EAWKMWHEDGLSI KIAN P R
Sbjct: 526 TQELNLSLDGEASLQITVNTRKVCPTPNLQKTLSPAKFEAWKMWHEDGLSIHKIANLPSR 585
Query: 240 SAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKN 299
APIK +TV +YLL+A EG + +W R C E+GLT EIFS IQ AI KVG ++KLKPIKN
Sbjct: 586 QAPIKVETVCEYLLDAAQEGLEFDWIRFCSEIGLTGEIFSDIQGAIIKVGSREKLKPIKN 645
Query: 300 ELPDDITYAHIKACLVMENCGISPEVIPPSQKKGNTDELPSKASETWHAEEPHEVEECGK 359
ELP+D++YAHIK L M+ G+S E + PS PSK + + VE
Sbjct: 646 ELPEDVSYAHIKTFLAMQTSGMSLEGMQPSHLS------PSKDDPVQNKVPANSVEIASL 699
Query: 360 SMVTFGCAYNNKEMTSLPVTKAEVQELSVGCGDDELCS-HKRQRVDCPDGGFTVLEATAS 418
+ VT KE+ P+ D++LCS KRQ+ DG T LEAT +
Sbjct: 700 TTVT-----ERKELKPDPIH------------DEDLCSPEKRQKTIITDGSSTALEATET 742
Query: 419 SVLNLLQKHDEG 430
S+L+LL+ +DEG
Sbjct: 743 SILDLLKNYDEG 754
>gi|356537724|ref|XP_003537375.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase homolog [Glycine max]
Length = 920
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 245/444 (55%), Positives = 299/444 (67%), Gaps = 20/444 (4%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
SKK++D QFDKL LHGLGK++ +NWWK L YQLIS GYL E + +YRT+SVS +G+Q+L
Sbjct: 442 SKKILDVQFDKLPLHGLGKNYPANWWKALGYQLISQGYLKEILSGIYRTISVSSKGEQFL 501
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S+RPD++PPL+LT EM+ E++ + K+ +T E+EGFSEA+ QLY MLLEE
Sbjct: 502 ASSRPDYKPPLVLTLTAEMLGVEDNGNTKE---EFKTLSTSESEGFSEAEGQLYQMLLEE 558
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R KLAR GTAPYA+CGDQTIKKIAL RPSTKARLANIDGVNQHLV +GDH LQ I+ L
Sbjct: 559 RLKLARSVGTAPYAICGDQTIKKIALPRPSTKARLANIDGVNQHLVTKYGDHFLQVIQKL 618
Query: 181 SQKLNLSLDGKVGEHTAF-----TRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIAN 235
SQ LNLSLDG+ TA RK+ +V N KLTPAK+EAWKMWHEDG SI +IAN
Sbjct: 619 SQGLNLSLDGEARVATASLQTNEVRKVSLVTNKSNKLTPAKFEAWKMWHEDGCSIHEIAN 678
Query: 236 YPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLK 295
+PGRSAPIKEQ V +YLLEA EG +W R + +GLT EI S IQ AISKVG DKLK
Sbjct: 679 FPGRSAPIKEQIVAEYLLEAAQEGLPFDWARFSEMIGLTQEIISEIQGAISKVGSTDKLK 738
Query: 296 PIKNELPDDITYAHIKACLVMENCGISPEVIPP----SQKKG----NTDELPSKASETWH 347
PIKNELP +ITY HIK L M NCGIS E I ++K G N L ET H
Sbjct: 739 PIKNELPKEITYQHIKTYLTMRNCGISLEAIQSGSIQTEKDGEPAHNASNLSGPTLETCH 798
Query: 348 AEEPHEVEECGKSMVTFGCAYNNKEMTSLPVTKAEVQELSVGCGDDELCSHKRQRV-DCP 406
E H + T C E+ +LPV +EVQ+LS+ + ++KR +V +
Sbjct: 799 VER-HCEDGISAISSTEKCNLEINEVPTLPVNGSEVQKLSL--TSEGGFTNKRHKVSETK 855
Query: 407 DGGFTVLEATASSVLNLLQKHDEG 430
+ T L+AT SSV+ L+ DEG
Sbjct: 856 EVNSTKLKATESSVVEXLKNFDEG 879
>gi|297745728|emb|CBI15784.3| unnamed protein product [Vitis vinifera]
Length = 969
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/402 (56%), Positives = 282/402 (70%), Gaps = 18/402 (4%)
Query: 32 QLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSN 91
Q+ + YL E++KDVY+TVSVSQ+G Q+L S+ P HQP L+L EMVD EEHE S
Sbjct: 542 QVTVFCYLMESVKDVYKTVSVSQKGAQFLSSSTPAHQPKLVLQVTNEMVDDEEHEGTSGK 601
Query: 92 VGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPST 151
G+LK AT E EGFSE + QLYHMLL+ER K AR GTAPYA+CG++TIKKIAL RPST
Sbjct: 602 FGELKGLATFEYEGFSETEGQLYHMLLDERMKFARGIGTAPYAICGNETIKKIALIRPST 661
Query: 152 KARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTK 211
KARLANIDGVNQH + T+GDH LQ+I+HLSQ LNL LDG A RK+ V N + K
Sbjct: 662 KARLANIDGVNQHFLTTYGDHFLQSIQHLSQALNLPLDGDASMQAAVVRKMQPVPNQQRK 721
Query: 212 LTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEV 271
LTPAKYEAWKMW EDGLSI+K+AN+P RSAPIK+QTV++YLL A EGF I+WTRLCDEV
Sbjct: 722 LTPAKYEAWKMWQEDGLSIEKVANFPSRSAPIKDQTVLEYLLGAAQEGFAIDWTRLCDEV 781
Query: 272 GLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKACLVMENCGISPEVIPPSQK 331
GLT E+FS I+ AI+KVG +DKLKP+K E P+ I+YAHIK CL +++CG+S EVIPP
Sbjct: 782 GLTREMFSDIEAAITKVGSRDKLKPVKIESPEYISYAHIKVCLTLQDCGMSKEVIPPGNH 841
Query: 332 KGNT-DELPSKASETWHAEEPHEVEECGKSMVTF-GCAYNNKEMTSLPVTKAEVQELSVG 389
T DELPSKASE SM T C TS+P T ++ G
Sbjct: 842 NTLTADELPSKASEA--------------SMDTMHKCLIRGPFTTSIPFT-VDLDMHPPG 886
Query: 390 CGDDELCSHKRQRVDCPDGGFTVL-EATASSVLNLLQKHDEG 430
D+ KRQ++D P+ ++ EAT SS+L+LL+ +D+G
Sbjct: 887 VHDEIFSLRKRQKIDEPEEESLIMQEATESSILDLLRNYDDG 928
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETI 43
SK+++DA+FDKL LHGLGKDHSSNWWK LAYQLISYG ++E +
Sbjct: 436 SKRILDAKFDKLPLHGLGKDHSSNWWKALAYQLISYGTISERL 478
>gi|356569961|ref|XP_003553162.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Glycine
max]
Length = 920
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 244/444 (54%), Positives = 298/444 (67%), Gaps = 20/444 (4%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK++D QFDKL LHGLGK++ +NWWK L +QLIS GYL E + D YRT+SVS +G+Q+L
Sbjct: 442 AKKILDVQFDKLPLHGLGKNYPANWWKALRHQLISQGYLKEIVSDRYRTISVSSKGEQFL 501
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S+RPD+QPPL+LT EM+ E++ K+ +T E+EGFSEA+ QLY MLLEE
Sbjct: 502 ASSRPDYQPPLVLTLTAEMLGEEDNGNTQEA---FKTLSTSESEGFSEAEGQLYQMLLEE 558
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R KLAR GTAPYA+CGDQTIKKIAL RPSTKARLANIDGVNQHLV +GD LQ I+ L
Sbjct: 559 RLKLARSVGTAPYAICGDQTIKKIALTRPSTKARLANIDGVNQHLVTEYGDDFLQVIQKL 618
Query: 181 SQKLNLSLDGKVGEHTAF-----TRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIAN 235
SQ LNLSLDG+ TA RK+ +V N KLTPAK+EAWK WHEDG SI +IAN
Sbjct: 619 SQVLNLSLDGEARVATASLQTNEVRKVSLVTNKSNKLTPAKFEAWKKWHEDGCSIHEIAN 678
Query: 236 YPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLK 295
+PGRSAPIKEQ+V +YLLEA EG +W R + +GLT I S IQ AISKVG DKLK
Sbjct: 679 FPGRSAPIKEQSVAEYLLEAAQEGLPFDWARFSEMIGLTQGIISEIQGAISKVGSTDKLK 738
Query: 296 PIKNELPDDITYAHIKACLVMENCGISPEVIPP-SQKKGNTDELPSKAS-------ETWH 347
PIKNELP++I+Y HIK L M NCGIS E I S + G DE AS ET H
Sbjct: 739 PIKNELPEEISYQHIKTYLTMRNCGISLEAIQSGSNQTGKDDEPAHNASNLSDPTLETCH 798
Query: 348 AEEPHEVEECGKSMVTFGCAYNNKEMTSLPVTKAEVQELSVGCGDDELCSHKRQRV-DCP 406
E E KS + E+ LPV +EVQ+L + C + ++KRQ+V +
Sbjct: 799 VERYCEDGISAKSSLE-KWDLEIDEVPILPVNGSEVQKLPLVCEGE--FTNKRQKVSETK 855
Query: 407 DGGFTVLEATASSVLNLLQKHDEG 430
+ T L+AT SSV+ L+ DEG
Sbjct: 856 EVNSTKLKATESSVVEWLKNLDEG 879
>gi|449462782|ref|XP_004149119.1| PREDICTED: ATP-dependent DNA helicase RecQ-like [Cucumis sativus]
Length = 906
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/350 (57%), Positives = 255/350 (72%), Gaps = 27/350 (7%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLIS----------------------YGY 38
+KK++D QFDKL LHGLGK++SSNWWK LA QLIS GY
Sbjct: 437 AKKILDTQFDKLPLHGLGKEYSSNWWKALASQLISNGSVLNATFLTKVLEKLKHFPKTGY 496
Query: 39 LTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSS 98
LTE I+DVYRT+ +S +G+Q+L SAR D QPPL+L EM+ E ++ G + +
Sbjct: 497 LTENIRDVYRTIGISAKGEQFLDSARQDCQPPLVLPVTSEMIGENEDDSALIEAGKMDNL 556
Query: 99 ATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANI 158
AT ++ G SEA+ +L+ +LLEER KLAR GTAPYA+CGDQTIK+IAL RPSTKARLANI
Sbjct: 557 ATFKS-GLSEAEEKLFQLLLEERMKLARSAGTAPYAICGDQTIKRIALIRPSTKARLANI 615
Query: 159 DGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGE----HTAFTRKLHVVVNTRTKLTP 214
DGVNQHL+ HGD +L+ ++ LSQ+++LSLDG+ E RKL+ N R L P
Sbjct: 616 DGVNQHLLKMHGDLILEAVKRLSQQVSLSLDGEYREEGNGQGTTMRKLYTEPNQRRPLAP 675
Query: 215 AKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLT 274
AK+EAWKMWHEDGLSIQKIAN+PGR APIKE TV Y+++AV EG++I+WT+ CDE+GLT
Sbjct: 676 AKFEAWKMWHEDGLSIQKIANFPGRLAPIKETTVFGYIVDAVQEGYEIDWTKFCDEIGLT 735
Query: 275 DEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKACLVMENCGISPE 324
+IFS IQ A++KVG +KLK IK+ELP++I YAHIKACLVM++ G+SPE
Sbjct: 736 CQIFSDIQSAVTKVGSAEKLKAIKDELPEEINYAHIKACLVMQSRGMSPE 785
>gi|449517403|ref|XP_004165735.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Cucumis
sativus]
Length = 919
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/363 (54%), Positives = 254/363 (69%), Gaps = 40/363 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLIS----------------------YGY 38
+KK++D QFDKL LHGLGK++SSNWWK LA QLIS GY
Sbjct: 437 AKKILDTQFDKLPLHGLGKEYSSNWWKALASQLISNGSVLNATFLTKVLEKLKHFPKTGY 496
Query: 39 LTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSS 98
LTE I+DVYRT+ +S +G+Q+L SAR D QPPL+L EM+ E ++ G + +
Sbjct: 497 LTENIRDVYRTIGISAKGEQFLDSARQDCQPPLVLPVTSEMIGENEDDSALIEAGKMDNL 556
Query: 99 ATLENEGFSEADM-------------QLYHMLLEERKKLARVTGTAPYALCGDQTIKKIA 145
AT ++ G SE + +L+ +LLEER KLAR GTAPYA+CGDQT+K+IA
Sbjct: 557 ATFKS-GLSEVCLLNTNCLLMPWLRKKLFQLLLEERMKLARSAGTAPYAICGDQTVKRIA 615
Query: 146 LARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGE----HTAFTRK 201
L RPSTKARLANIDGVNQHL+ HGD +L+ ++ LSQ+++LSLDG+ E RK
Sbjct: 616 LTRPSTKARLANIDGVNQHLLKMHGDLILEAVKRLSQQVSLSLDGEYREEGNGQGTTMRK 675
Query: 202 LHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFD 261
L+ N R L PAK+EAWKMWHEDGLSIQKIAN+PGR APIKE TV Y+++AV EG++
Sbjct: 676 LYTEPNQRRPLAPAKFEAWKMWHEDGLSIQKIANFPGRLAPIKETTVFGYIVDAVQEGYE 735
Query: 262 INWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKACLVMENCGI 321
I+WT+ CDE+GLT +IFS IQ A++KVG +KLK IK+ELP++I YAHIKACLVM++ G+
Sbjct: 736 IDWTKFCDEIGLTCQIFSDIQSAVTKVGSAEKLKAIKDELPEEINYAHIKACLVMQSRGM 795
Query: 322 SPE 324
SPE
Sbjct: 796 SPE 798
>gi|449462784|ref|XP_004149120.1| PREDICTED: ATP-dependent DNA helicase RecQ-like [Cucumis sativus]
Length = 822
Score = 363 bits (932), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 181/342 (52%), Positives = 241/342 (70%), Gaps = 31/342 (9%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVS---------- 51
KK+ AQFDKL L+GLG+++SS WWK LA QLIS GYLTE I D YRT+
Sbjct: 438 KKIRYAQFDKLPLYGLGREYSSKWWKALASQLISNGYLTENICDFYRTIGSSTFTQSFTS 497
Query: 52 ---------VSQQGKQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLE 102
+S +G+Q+L SAR D QPPL+L EM+ E ++ S G + + ATL+
Sbjct: 498 RTLEFYSYLISAKGEQFLDSARQDCQPPLVLPVMSEMIGENEDDSALSEAGKMDNLATLK 557
Query: 103 NEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVN 162
+ G SEA+ +L+ +LLEER K+AR T PYA+CGDQTIK+IAL RPSTKARLANIDGVN
Sbjct: 558 S-GLSEAEEKLFQLLLEERMKIARSVRTVPYAICGDQTIKRIALIRPSTKARLANIDGVN 616
Query: 163 QHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKM 222
+HL+ HGD +L+ ++ LSQ+++ SLDG E+ R+ R L+PA+++ WKM
Sbjct: 617 RHLLKMHGDLILEAVKRLSQQVSQSLDG---EYRKPNRR-------RRPLSPARFKTWKM 666
Query: 223 WHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQ 282
WHEDGLSIQKIAN+PGRSAPI+E +V Y+++AV +G++I+WT+ CDE+G T +IFS IQ
Sbjct: 667 WHEDGLSIQKIANFPGRSAPIRETSVFQYIIDAVQKGYEIDWTKFCDEIGFTGQIFSDIQ 726
Query: 283 EAISKVGCKDKLKPIKNELPDDITYAHIKACLVMENCGISPE 324
A++KVG KLK IKNE+P +I+YAHIK L M+ CGIS +
Sbjct: 727 SAVTKVGSAKKLKAIKNEVP-EISYAHIKTFLAMQRCGISSK 767
>gi|414888136|tpg|DAA64150.1| TPA: hypothetical protein ZEAMMB73_018829 [Zea mays]
Length = 898
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 164/360 (45%), Positives = 221/360 (61%), Gaps = 12/360 (3%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+VD +DKL +HG GKD+SSNWWK L LI++ YL ET++D +R VSVS +G ++L
Sbjct: 436 AKKIVDNNYDKLQMHGRGKDYSSNWWKALGGLLIAHDYLKETVRDTFRFVSVSPKGVKFL 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+A PL+ EM++ EEH + G L TLE+E FSE + +LY LL
Sbjct: 496 STADKIDGAPLVFQLTAEMIELEEHGSSHHKEGGLNLVPTLESEKFSEDESKLYQRLLNV 555
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R K+A+ GTAPYA+CGDQTI+ A RPST ARLANIDGVNQH + + +Q I L
Sbjct: 556 RMKIAQDIGTAPYAVCGDQTIRNFAKMRPSTGARLANIDGVNQHFISRFSNIFIQNIAEL 615
Query: 181 SQKLNLSLDGK----------VGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSI 230
S++LNL LD E+ A K V N L AK AW++WH+ S
Sbjct: 616 SKELNLPLDNSPFPPPPPTNPAAENIAGIPK-PVQNNLPGILGDAKLTAWELWHKQEYSF 674
Query: 231 QKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGC 290
KIA Y R+ PIKEQTV+ Y+L+A EG +++W+R C EVGLT +I +AI+ AISKVG
Sbjct: 675 LKIA-YFRRAVPIKEQTVIAYILDAAREGCEMDWSRFCREVGLTPDIATAIRLAISKVGS 733
Query: 291 KDKLKPIKNELPDDITYAHIKACLVMENCGISPEVIPPSQKKGNTDELPSKASETWHAEE 350
++K+KPIK ELP+++TY IK L +E CG+S +V G + + + HA E
Sbjct: 734 REKMKPIKEELPENVTYDMIKTFLTIEGCGLSEQVFGNGTADGVSSRIAESPISSCHASE 793
>gi|242046956|ref|XP_002461224.1| hypothetical protein SORBIDRAFT_02g043160 [Sorghum bicolor]
gi|241924601|gb|EER97745.1| hypothetical protein SORBIDRAFT_02g043160 [Sorghum bicolor]
Length = 901
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 217/355 (61%), Gaps = 18/355 (5%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+VD +DKL +HG GKD+SSNWWK L LI+Y YL ET+ D +R VSVS +G ++L
Sbjct: 436 AKKIVDKNYDKLQMHGRGKDYSSNWWKALGGLLIAYDYLKETVHDTFRFVSVSPKGVKFL 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEH-ETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
+A PL+ EM++ EEH + G L TLE E FSE + +LY MLL
Sbjct: 496 STADKMDGAPLVFQLTAEMIELEEHGSSHHKEGGGLNPVPTLEAEKFSEDESKLYQMLLN 555
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
R KLA+ GTAPYA+CGDQTI+ A RPST ARLANIDGVNQH + + +Q I
Sbjct: 556 VRMKLAQDIGTAPYAICGDQTIRNFAKMRPSTGARLANIDGVNQHFISRFSNIFIQNIAQ 615
Query: 180 LSQKLNLSLDGK----------VGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLS 229
LS++LNL LD V + L N L AK AW++WH+ S
Sbjct: 616 LSKELNLPLDNSPLPAPPTNPAVENIAGLPKPLQN--NLPGILGDAKLTAWELWHKQEYS 673
Query: 230 IQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVG 289
KIA Y R+ PIKEQTV+ Y+L+A EG +++W+R C EVGLT +I +AI+ AISKVG
Sbjct: 674 FLKIA-YFRRAVPIKEQTVIAYILDAAREGCEMDWSRFCREVGLTPDIATAIRLAISKVG 732
Query: 290 CKDKLKPIKNELPDDITYAHIKACLVMENCGISPEVIPPSQKKGNTDELPSKASE 344
DKLKPIK ELP+++TY IK L +E G+S +V G D +PS+ +E
Sbjct: 733 SHDKLKPIKEELPENVTYEMIKTFLTIEGHGLSEQVF----GSGTADGVPSRRAE 783
>gi|357121465|ref|XP_003562440.1| PREDICTED: Werner syndrome ATP-dependent helicase-like
[Brachypodium distachyon]
Length = 894
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 154/347 (44%), Positives = 217/347 (62%), Gaps = 13/347 (3%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+V+ +DKL +H GKD+ NWWK L L+++GYL ETI D +R +SVS QG ++L
Sbjct: 436 AKKIVEHNYDKLPMHARGKDYPPNWWKALGGLLLAHGYLKETISDTFRLLSVSPQGVKFL 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
PL+L EM++ EEH + G L AT+E+E SE +++LY MLL
Sbjct: 496 SGT----GTPLVLQLTAEMIEQEEHGSSEHKEGALNPVATVESEKSSEEELKLYQMLLNV 551
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R KLA GTAPYA+CGDQT++ A RPST ARLANIDGVNQH V +G +Q I
Sbjct: 552 RMKLAHDIGTAPYAICGDQTLRHFAKIRPSTGARLANIDGVNQHFVTRYGAIFIQNITQF 611
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
S++L+L +D G + V N L AK+ +W++W + G S +KIA++ R+
Sbjct: 612 SKELSLQMDDSSGVEDMMSVSKPVNNNLPRNLGDAKFTSWELWQKSGYSFKKIAHFR-RA 670
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
IKEQTV+ Y+L+A +G ++NW R C+E GLT EI S I+ AI+KVG +DKLKPIK E
Sbjct: 671 VAIKEQTVISYILDAARDGCEMNWNRFCEETGLTHEIASQIRLAIAKVGSRDKLKPIKEE 730
Query: 301 LPDDITYAHIKACLVMENCGISPEVIPPSQKKGNT--DELPSKASET 345
LP+++TY IK L +++ G S + GN D++P+ +E+
Sbjct: 731 LPENVTYEMIKIFLAIDDVGASEKTF------GNVSADKVPASTTES 771
>gi|115474113|ref|NP_001060655.1| Os07g0681600 [Oryza sativa Japonica Group]
gi|33146670|dbj|BAC80016.1| putative ATP-dependent DNA helicase recQ [Oryza sativa Japonica
Group]
gi|113612191|dbj|BAF22569.1| Os07g0681600 [Oryza sativa Japonica Group]
gi|215707030|dbj|BAG93490.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 886
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 144/345 (41%), Positives = 210/345 (60%), Gaps = 4/345 (1%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
KK+V+ FDKL LHG GKD+ NWWK L L+++ YL ET+ D +R++SVS G ++L
Sbjct: 437 KKIVENNFDKLPLHGRGKDYPPNWWKALGGLLLAHDYLKETVHDTFRSISVSPNGYKFLS 496
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
+A L L EM++ E H L E+E SE ++++Y +LL R
Sbjct: 497 TADKGDGASLFLQLTAEMIELEGHGGSQCKEEGLNPLGPSESEKISEDELKIYQVLLNVR 556
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
+LA+ GTAPYA+CGDQT++ A RPST ARLANIDGVNQH + +G +Q I L+
Sbjct: 557 MQLAQDIGTAPYAICGDQTLRNFAKFRPSTIARLANIDGVNQHFISHYGSIFIQNITQLA 616
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
++LNL +D + N L AK+ +W++W + S QK+A+Y R+
Sbjct: 617 KELNLPVDDLSAVESIPAAPKPTQNNLPRSLGGAKFCSWELWQKMKFSFQKVAHYR-RAV 675
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNEL 301
PIKE+TV+ Y+L+A +G +++W+R C+EVGLT EI S I+ AI+K+G +KLKPIK+EL
Sbjct: 676 PIKEKTVISYILDAARDGCEMDWSRFCEEVGLTHEIASQIRLAITKLGSHEKLKPIKDEL 735
Query: 302 PDDITYAHIKACLVMENCGISPEV---IPPSQKKGNTDELPSKAS 343
P+++TY I+ L +E G+S +V +P + T E P S
Sbjct: 736 PENVTYEMIQTFLAIEGLGLSDQVFGTVPTDGIQSKTSEAPKTTS 780
>gi|222637699|gb|EEE67831.1| hypothetical protein OsJ_25607 [Oryza sativa Japonica Group]
Length = 905
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 146/364 (40%), Positives = 212/364 (58%), Gaps = 23/364 (6%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYG-------------------YLTET 42
KK+V+ FDKL LHG GKD+ NWWK L L+++G YL ET
Sbjct: 437 KKIVENNFDKLPLHGRGKDYPPNWWKALGGLLLAHGTIISEYRFVNAVLLINGYNYLKET 496
Query: 43 IKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLE 102
+ D +R++SVS G ++L +A L L EM++ E H L E
Sbjct: 497 VHDTFRSISVSPNGYKFLSTADKGDGASLFLQLTAEMIELEGHGGSQCKEEGLNPLGPSE 556
Query: 103 NEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVN 162
+E SE ++++Y +LL R +LA+ GTAPYA+CGDQT++ A RPST ARLANIDGVN
Sbjct: 557 SEKISEDELKIYQVLLNVRMQLAQDIGTAPYAICGDQTLRNFAKFRPSTIARLANIDGVN 616
Query: 163 QHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKM 222
QH + +G +Q I L+++LNL +D + N L AK+ +W++
Sbjct: 617 QHFISHYGSIFIQNITQLAKELNLPVDDLSAVESIPAAPKPTQNNLPRSLGGAKFCSWEL 676
Query: 223 WHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQ 282
W + S QK+A+Y R+ PIKE+TV+ Y+L+A +G +++W+RLC+EVGLT EI S I+
Sbjct: 677 WQKMKFSFQKVAHYR-RAVPIKEKTVISYILDAARDGCEMDWSRLCEEVGLTHEIASQIR 735
Query: 283 EAISKVGCKDKLKPIKNELPDDITYAHIKACLVMENCGISPEV---IPPSQKKGNTDELP 339
AI+K+G +KLKPIK+ELP+++TY I+ L +E G+S +V +P + T E P
Sbjct: 736 LAITKLGSHEKLKPIKDELPENVTYEMIQTFLAIEGLGLSDQVFGTVPTDGIQSKTSEAP 795
Query: 340 SKAS 343
S
Sbjct: 796 KTTS 799
>gi|218200270|gb|EEC82697.1| hypothetical protein OsI_27361 [Oryza sativa Indica Group]
Length = 905
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 161/450 (35%), Positives = 243/450 (54%), Gaps = 46/450 (10%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYG-------------------YLTET 42
KK+V+ FDKL LHG GKD+ NWWK L L+++G YL ET
Sbjct: 437 KKIVENNFDKLPLHGRGKDYPPNWWKALGGLLLAHGTIISEYRFVNAVLLINGYNYLKET 496
Query: 43 IKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLE 102
+ D +R++SVS G ++L +A L L EM++ E H L E
Sbjct: 497 VHDTFRSISVSPNGYKFLSTADKGDGASLFLQLTAEMIELEGHGGSQCKEEGLNPLGPSE 556
Query: 103 NEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVN 162
+E SE ++++Y +LL R +L++ GTAPYA+CGDQT++ A RPST ARLANIDGVN
Sbjct: 557 SEKISEDELKIYQVLLNVRMQLSQDIGTAPYAICGDQTLRNFAKFRPSTIARLANIDGVN 616
Query: 163 QHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKM 222
QH + +G +Q I L+++LNL +D + N L AK+ +W++
Sbjct: 617 QHFISHYGSIFIQNITQLAKELNLPVDDLSAVESIPAAPKPTQNNLPRSLGGAKFCSWEL 676
Query: 223 WHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQ 282
W + S QK+A+Y R+ PIKE+TV+ Y+L+A +G +++W+R C+EVGLT EI S I+
Sbjct: 677 WQKMKFSFQKVAHYR-RAVPIKEKTVISYILDAARDGCEMDWSRFCEEVGLTHEIASQIR 735
Query: 283 EAISKVGCKDKLKPIKNELPDDITYAHIKACLVMENCGISPEV---IPPSQKKGNTDELP 339
AI+K+G +KLKPIK+ELP+++TY I+ L +E G+S +V +P + T E P
Sbjct: 736 LAITKLGSHEKLKPIKDELPENVTYEMIQTFLAIEGLGLSDQVFGTVPTDGIQSKTSEAP 795
Query: 340 SKASETWHAEEPHEVEECGKSMVTFGCAYNNKEMTSLPVTKAEVQELSVGCGDDELCSHK 399
S E G + + P+TK + S+ CGD+ + K
Sbjct: 796 KTTSNG---------SEVGADVC-----------DASPLTKRGQTDGSLICGDEP--ASK 833
Query: 400 RQRVDCPDGGFT-VLEATASSVLNLLQKHD 428
Q++D T + AT ++L L++ +
Sbjct: 834 LQKIDGQGVNSTAAIGATEDAILELVEGRN 863
>gi|168036322|ref|XP_001770656.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678017|gb|EDQ64480.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 964
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 149/370 (40%), Positives = 209/370 (56%), Gaps = 19/370 (5%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVS-----VSQQG 56
KKVVD FDK +HGLG+ + NWWK+LA QL+ GYL ET + +R VS V+ +G
Sbjct: 467 KKVVDNGFDKSPVHGLGRGRNQNWWKSLADQLLGLGYLKETAGNNFRLVSLAILSVADKG 526
Query: 57 KQYLGSA-RPDHQPPLLLTFNGEMV--DAEEHETISSNVGDLKSSATLENEGFSEADMQL 113
Q+L SA L+L N EM DA+ E + ++ L++EGFS + +
Sbjct: 527 DQFLWSASNMGLISSLMLPINQEMALEDAKRGEALPLPKSNM--DMHLQSEGFSVVEQKF 584
Query: 114 YHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHL 173
YH+L+E R +AR T+PYA+ + T++KIA RPST+ARL NIDGVNQ LV HG +
Sbjct: 585 YHLLMEMRADIARRNSTSPYAILNESTLQKIAKMRPSTEARLRNIDGVNQWLVNWHGKEI 644
Query: 174 LQTIRHLSQKLNLSLDGKVGEHTAFT-------RKLHVVVNTRTKLTPAKYEAWKMWHED 226
L I+ S + NLSLD T K++ TKL+P K EAW+MW E
Sbjct: 645 LDAIKTHSMEFNLSLDDFENSSQPSTVPKPKVDGKMNSSNGDATKLSPGKEEAWRMWQEQ 704
Query: 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAIS 286
GLS +IAN P R PI E TV+ YL + + G++++W R CDEVG T E A++ A+
Sbjct: 705 GLSFLEIANLPERPKPILENTVISYLCDCIKAGYEVDWGRFCDEVGFTRETALAVRAAVE 764
Query: 287 KVGCKDKLKPIKNELPDDITYAHIKACLVMENCGISPEVIPPSQKKGNTDELPSKASETW 346
+ G + LKPIK + P+ ITY IK L+ E C + P + + T+EL + +
Sbjct: 765 RAGSTELLKPIKEQAPEHITYRDIKVYLLQEECKLPFPKTP--ELESETEELGFEIVDAA 822
Query: 347 HAEEPHEVEE 356
+ P E+ +
Sbjct: 823 TVDAPQELSD 832
>gi|302767148|ref|XP_002966994.1| hypothetical protein SELMODRAFT_408296 [Selaginella moellendorffii]
gi|300164985|gb|EFJ31593.1| hypothetical protein SELMODRAFT_408296 [Selaginella moellendorffii]
Length = 901
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 206/332 (62%), Gaps = 20/332 (6%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKVV+ ++KL +HGLG++ ++ WWK L QL+S GYL ET ++ +RTVSVSQ+G+++L
Sbjct: 435 AKKVVERGYEKLHVHGLGREKTATWWKALGDQLLSLGYLRET-REKFRTVSVSQKGQRFL 493
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLEN--EGFSEADMQLYHMLL 118
+ L+L EM+ E+ S+ D +++T G E +M+L+ L+
Sbjct: 494 EEL--PNGASLVLPVTEEMLREEK-----SSAPDTATASTPGPTLNGLPEVEMKLFKALI 546
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
+ R ++A + TAPY +C ++T+++I RPS RL N++G+NQ LV +G+ L+ ++
Sbjct: 547 DLRAEIADKSSTAPYMICNERTLQRITNTRPSNIVRLRNVEGINQWLVTEYGEAFLECVK 606
Query: 179 HLSQKLNLSLDGK-VGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYP 237
+ Q+ L D + + + A +R + R+ LTPAK EAW MWHE +S +IAN P
Sbjct: 607 RICQETGLEQDKESIVQKAAASR-----TSDRSMLTPAKSEAWSMWHEKKMSFFEIANLP 661
Query: 238 GRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPI 297
R PIKE TV++Y+LE + G + +W+R DE G+T I I+ AI KVG ++K+KP+
Sbjct: 662 ERPRPIKEDTVIEYILECLRAGCEADWSRFFDETGMTTCIREQIRAAIGKVGSREKMKPL 721
Query: 298 KNELPDDITYAHIKACLVME----NCGISPEV 325
K LP+ ++YAHIK L+ E + G+SP V
Sbjct: 722 KENLPETVSYAHIKIYLLAEELGVDLGLSPNV 753
>gi|302755182|ref|XP_002961015.1| hypothetical protein SELMODRAFT_402571 [Selaginella moellendorffii]
gi|300171954|gb|EFJ38554.1| hypothetical protein SELMODRAFT_402571 [Selaginella moellendorffii]
Length = 935
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 203/332 (61%), Gaps = 20/332 (6%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKVV+ ++KL +HGLG++ ++ WWK L QL+S GYL ET ++ +RTVSVS +G+++L
Sbjct: 435 AKKVVERGYEKLHVHGLGRERTATWWKALGDQLLSLGYLRET-REKFRTVSVSPKGQRFL 493
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLEN--EGFSEADMQLYHMLL 118
+ L+L EM+ E+ S+ D +++T G E +M+L+ L+
Sbjct: 494 EEL--PNGASLVLPVTEEMLREEK-----SSAPDAATASTPGPTLNGLPEVEMKLFKALI 546
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
+ R +A + TAPY +C ++T+++I RPS RL N++G+NQ LV +G+ L+ ++
Sbjct: 547 DLRADIADKSSTAPYMICNERTLQRITNTRPSNIVRLRNVEGINQWLVTEYGEAFLECVK 606
Query: 179 HLSQKLNLSLDGK-VGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYP 237
+ Q+ L D + + + A +R + R+ LTPAK EAW MWHE +S +IAN P
Sbjct: 607 RICQETGLEQDKESIVQKAAASR-----TSDRSMLTPAKSEAWSMWHEKKMSFFEIANLP 661
Query: 238 GRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPI 297
R PIKE TV++Y+LE + G + +W+R D G+T I I+ AI KVG ++K+KP+
Sbjct: 662 ERPRPIKEDTVIEYILECLRAGCEADWSRFFDATGMTTCIREQIRAAIGKVGSREKMKPL 721
Query: 298 KNELPDDITYAHIKACLVME----NCGISPEV 325
K LP+ ++YAHIK L+ E + G+SP V
Sbjct: 722 KENLPETVSYAHIKIYLLAEELGVDLGLSPNV 753
>gi|449510454|ref|XP_004163669.1| PREDICTED: Bloom syndrome protein homolog [Cucumis sativus]
Length = 1050
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 125/204 (61%), Gaps = 16/204 (7%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+ +AQFD L LHGLGK++SSNWWK LA QLIS GYLTE I+DVYRT+S+S +GK++L
Sbjct: 802 AKKIRNAQFDMLPLHGLGKEYSSNWWKALASQLISNGYLTENIRDVYRTISISAKGKKFL 861
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENE---------------G 105
S R D PPL+L EM+ E+ + S G +++ AT
Sbjct: 862 NSVRQDCLPPLILPVTSEMIGENENNSALSEAGKMENLATYFQSLPLAICTMFGHIIKWN 921
Query: 106 FSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKAR-LANIDGVNQH 164
+ A+++L+ +L EER KL+R GTAPYA+C QT+K+IAL RPST+ L + +
Sbjct: 922 TNWAEVKLFQLLSEERMKLSRSAGTAPYAICDAQTVKRIALTRPSTRCNSLPHSSPFSSS 981
Query: 165 LVITHGDHLLQTIRHLSQKLNLSL 188
V++ D L+ + + L+ SL
Sbjct: 982 GVLSFSDEPLEPVILVHPSLSGSL 1005
>gi|357161973|ref|XP_003579266.1| PREDICTED: uncharacterized protein LOC100836820 [Brachypodium
distachyon]
Length = 1374
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 113/188 (60%), Gaps = 12/188 (6%)
Query: 117 LLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQT 176
LL R KLA GTA YA+CGDQT++ A RPST ARLANIDGVNQH V + +Q
Sbjct: 124 LLNARMKLAHDIGTALYAICGDQTLRHFAKIRPSTGARLANIDGVNQHFVRHYSGIFIQN 183
Query: 177 IRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANY 236
I LS +L+L +D G + + N L AK+ +W++W + G +
Sbjct: 184 ITQLSNELSLPMDDSSGVEDMISVSKPLNNNLPRNLGDAKFTSWELWQKSGAVL------ 237
Query: 237 PGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKP 296
IK+QTV+ Y+L+A +G +NW R C+E GLT EI S I+ AI++VG +DKLKP
Sbjct: 238 ------IKKQTVISYILDAARDGCGMNWNRFCEETGLTHEIASQIRLAIAEVGSRDKLKP 291
Query: 297 IKNELPDD 304
IK ELP++
Sbjct: 292 IKEELPEN 299
>gi|440801622|gb|ELR22632.1| ATPdependent DNA helicase, RecQ subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 1067
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 152/319 (47%), Gaps = 33/319 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ K++ +FD+L HG GK +S WW L QL+ GY+ E I+D+Y+T +VS +G ++
Sbjct: 723 AAKILQYKFDRLPTHGQGKQYSKEWWGALMRQLMCQGYIAENIRDLYKTYAVSAKGLKWT 782
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATL----ENEGFSEADM-QLYH 115
+ ++L EM E+ N +K L + F + ++ +L+
Sbjct: 783 NVGYKAGE-RMVLPIPVEMRQEEK------NRAQVKERQKLITDHQQLRFMDTNVEELFG 835
Query: 116 MLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQ 175
L+ ++ AR G APY + ++ +A RP+T+AR I+G + + Q
Sbjct: 836 SLISLNREEARSRGLAPYMVIPIAVLESLARIRPTTEARFRAIEGRGMRTDVEGPEA--Q 893
Query: 176 TIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIAN 235
++ ++ + K G+ ++ K+T AK E +K++ E LSI I+
Sbjct: 894 KPGMVAVDMSATSPQKRGQKR--------TLDCAEKMTQAKMEVYKLFAEQNLSIDTISQ 945
Query: 236 YPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDK-- 293
G +K TV+ YL A+ G+ ++W+RL G++ + +++ + + +
Sbjct: 946 MRG----VKPTTVMSYLGAAIENGYAVDWSRL----GISPDARRTVEQTLDALPPAKRAV 997
Query: 294 LKPIKNELPDD-ITYAHIK 311
L+ IK +PD I Y ++
Sbjct: 998 LRAIKERIPDPAIDYGVVR 1016
>gi|134299124|ref|YP_001112620.1| ATP-dependent DNA helicase RecQ [Desulfotomaculum reducens MI-1]
gi|134051824|gb|ABO49795.1| ATP-dependent DNA helicase, RecQ-like protein [Desulfotomaculum
reducens MI-1]
Length = 707
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 140/314 (44%), Gaps = 51/314 (16%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV+ F++L +GL K++++ L + LI+ GY+ T +G+ +
Sbjct: 439 NKKVIQNGFNRLSTYGLMKEYTTKEISDLIHILIAEGYIYLT------------EGQYPV 486
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+P P L + E + V + E EAD LY+ LL
Sbjct: 487 AKLQPKAIPVL-----------KGKEKVLQKVR--------KKESIKEADNSLYNQLLNL 527
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK++++ PY + D T++++ + P+ + + NI GV Q + G ++ I+
Sbjct: 528 RKEISQRNNVPPYIVFSDSTLREMCVHYPTNEIEMLNIKGVGQVKLEHFGKEFMEVIKKY 587
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
L G V L + R K P+ + M+ E G S+Q+IA R
Sbjct: 588 -------LKGNVNNKETDQELLQ--QSARDKGLPSYVVSLNMFRE-GFSLQEIA----RQ 633
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
IK TV D+++ EG+DI W + + E I + I ++G +KLKPIK E
Sbjct: 634 RKIKPVTVQDHIIRCGVEGYDIVWDQF-----IPTEFEELILQKIEELGT-NKLKPIKEE 687
Query: 301 LPDDITYAHIKACL 314
LP+ I Y IKA +
Sbjct: 688 LPNTIDYMAIKAVI 701
>gi|405954059|gb|EKC21596.1| Werner syndrome ATP-dependent helicase-like protein [Crassostrea
gigas]
Length = 1136
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 148/336 (44%), Gaps = 49/336 (14%)
Query: 7 AQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTET-IKDVY-RTVSVSQQGKQYLGSAR 64
++F L G GK +NWWK+ LI GYL E I + + TV +S +G + A
Sbjct: 724 SRFTNLSGFGNGKYRKTNWWKSFGKALIYEGYLKEVAIPNSFGSTVELSSKGSVWRRGAS 783
Query: 65 P-----------DHQPPLLLTFN-GEMVDAEEHETI--SSNVGDLKSS-----------A 99
P + +PP+ +T V ++ S++ D S+
Sbjct: 784 PLKLTPTTDMLAEMRPPVAVTVRPAPSVSLSRSTSVPPSASASDWNSTQEEVKKTVSPQK 843
Query: 100 TLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANID 159
+ +E A LY L+++R LA+ TG P+++ ++ + +A RPS+K L ++
Sbjct: 844 LVVDEKTMRARADLYAKLVKKRNDLAQETGYTPHSIASNKVLLDLAKIRPSSKESLLKLE 903
Query: 160 GVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEA 219
Q V G ++ ++ Q+ ++ +D T+ ++ +LT + +
Sbjct: 904 DFPQAKVEKFGPTFIKILKDYCQEKDVKMDD--FPEIKLTKNDTDLMRELLRLTETQRAS 961
Query: 220 WKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFS 279
+ +++ D S++++A+ G +K TVV +L EA+ G +++ RL
Sbjct: 962 YVLFNRDNKSVEEVASLRG----LKTTTVVSHLCEAIKVGLEVDPVRL----------LF 1007
Query: 280 AIQEAISKVGCKDKLKPIKNELPDDITYAHIKACLV 315
I IS KL PIK+ LPD I Y I+ +
Sbjct: 1008 LISAVIS------KLTPIKDRLPDYIEYNQIRVVIA 1037
>gi|319651761|ref|ZP_08005887.1| ATP-dependent DNA helicase [Bacillus sp. 2_A_57_CT2]
gi|317396580|gb|EFV77292.1| ATP-dependent DNA helicase [Bacillus sp. 2_A_57_CT2]
Length = 713
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 115/209 (55%), Gaps = 19/209 (9%)
Query: 107 SEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLV 166
++ +++L+ ML + RKK+A P+ + D ++K+++ P +K + NI GV Q
Sbjct: 516 TDENIELFEMLRKLRKKIADEENVPPFVVFADASLKEMSRYFPVSKDMMLNIKGVGQMKY 575
Query: 167 ITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHED 226
+G+ +Q IR +++ N+S + + K ++ R P+ ++ +++D
Sbjct: 576 EKYGEDFIQAIREFAEEHNISPNPAAEAPS----KTEEPIDDR----PSYLISFD-YYKD 626
Query: 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAIS 286
G SI++IA S PI T+ +++ +V EG I+W+ + +E T+E + +A
Sbjct: 627 GDSIREIAKKRNFS-PI---TIQEHIFRSVREGNVIDWSEIFNE---TEE--KLVLQAAE 677
Query: 287 KVGCKDKLKPIKNELPDDITYAHIKACLV 315
K G +DKLKPIK ELP++I Y IKA LV
Sbjct: 678 KAG-RDKLKPIKEELPEEIDYFKIKAVLV 705
>gi|407475074|ref|YP_006789474.1| ATP-dependent DNA helicase RecQ [Clostridium acidurici 9a]
gi|407051582|gb|AFS79627.1| ATP-dependent DNA helicase RecQ [Clostridium acidurici 9a]
Length = 734
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 151/319 (47%), Gaps = 30/319 (9%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+K ++ D++ +G+ K++S + + L+S GYL T D + + ++Q+ L
Sbjct: 438 NKNILTYGLDRISTYGIMKEYSEGSIREIIMTLVSKGYLGIT-TDRFPILKLTQKSMDIL 496
Query: 61 -GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
G + H+ L+ + +D + E + K T+E E D +L+ +L +
Sbjct: 497 KGKEKIYHKRELV---HRRRIDNKNGE-------NSKIKNTIE-----EYDEELFALLRD 541
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
R ++++ P+ + D T+K+++ P K L I GV +G + + I+
Sbjct: 542 IRFEISKEKELPPFVIFHDITLKQMSSYYPQNKDELLKIKGVGIKKYENYGKNFINAIKD 601
Query: 180 LSQKLNLSLDG---KVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANY 236
Q N+ ++ + + T + + + ++ + YE + +G S+ KIA
Sbjct: 602 YCQDKNIDIEKVRENINRESNQTNDNYKIDDGSIEI-ESTYELTYNKYIEGKSLDKIA-- 658
Query: 237 PGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKP 296
+ E+TV+ +L++ +G DI+W+ + E I EAI KVG ++KLKP
Sbjct: 659 --EERNLTEETVLKHLMKLEEDGKDIDWSSFVSDT----EKEKMILEAIKKVG-REKLKP 711
Query: 297 IKNELPDDITYAHIKACLV 315
IK LPDDI+Y IK L+
Sbjct: 712 IKESLPDDISYLDIKLILI 730
>gi|333373944|ref|ZP_08465838.1| ATP-dependent helicase RecQ [Desmospora sp. 8437]
gi|332968696|gb|EGK07748.1| ATP-dependent helicase RecQ [Desmospora sp. 8437]
Length = 712
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 133/314 (42%), Gaps = 46/314 (14%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+K+V++ FD L +GL + HS L + GYL + +D Y T+S++
Sbjct: 438 AKRVLELGFDSLPTYGLLRSHSEKEINHRIRILAAEGYLRLS-EDEYPTLSLT------- 489
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P + GE + + K T E L+ L
Sbjct: 490 --------PAAVEVLKGE-------RQVLLRLKKPKERTTPRRE-------DLFEELRVL 527
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK L+ PY + D T+ +A P + + + GV + + +GD L IR
Sbjct: 528 RKSLSEAEQVPPYMIFPDSTLTDLARVLPMDRESMRAVKGVGEKKLEKYGDRFLAAIREY 587
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
++K ++ D E A + ++ P+ W +W E G ++ +I+ G S
Sbjct: 588 AEKQGITPDAGEQEVAA-----TLSTEKKSDSPPSHLTTWSLWQE-GKNLDEISRERGLS 641
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
T+ ++LL A EG ++W RL + +E I++AI KVG LKPIK
Sbjct: 642 P----TTLENHLLRAAGEGHPVDWDRL---IPAGEEPL--IRQAIEKVG-GTLLKPIKEA 691
Query: 301 LPDDITYAHIKACL 314
LP++ITY IKA L
Sbjct: 692 LPEEITYTSIKAVL 705
>gi|148266306|ref|YP_001233012.1| ATP-dependent DNA helicase RecQ [Geobacter uraniireducens Rf4]
gi|146399806|gb|ABQ28439.1| ATP-dependent DNA helicase RecQ [Geobacter uraniireducens Rf4]
Length = 715
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 133/305 (43%), Gaps = 46/305 (15%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL +G+G+ SS+ W ++ QL+ GYL + + Y + ++ + ARP
Sbjct: 446 DKLSTYGIGRGLSSDIWGSIFRQLVHLGYLEQDLA-AYSVLKLTAK-------ARP---- 493
Query: 70 PLLLTFNGEMVDAEEHETIS---SNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLAR 126
++ EE T++ + +K++ G D L+ L RK+LA
Sbjct: 494 ---------LLRGEERLTLARPRAKAIPVKNAPRTTATG-GAYDEGLFQSLRALRKQLAD 543
Query: 127 VTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNL 186
G P+ + GD T+ ++ALARP L I GV H + +G L IR
Sbjct: 544 DAGVPPFVVFGDATLAEMALARPHDAEALLRISGVGVHKLGRYGADFLAVIRE------- 596
Query: 187 SLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQ 246
G A + + + L+ E W++ H++GL+ +IA G +A
Sbjct: 597 ----HCGLAPAPLAGVPQAPSVKEGLSDTHLETWRL-HQEGLNQDEIAARRGLTA----V 647
Query: 247 TVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDIT 306
TVV +L + G ++ RL V + I+ I +VG LK IK+ LPD I+
Sbjct: 648 TVVGHLEALIQAGKPVDIDRL---VAAGHRVM--IEAKIREVGSNSPLKAIKDGLPDVIS 702
Query: 307 YAHIK 311
Y I+
Sbjct: 703 YEEIR 707
>gi|443717544|gb|ELU08558.1| hypothetical protein CAPTEDRAFT_162090 [Capitella teleta]
Length = 818
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/367 (23%), Positives = 155/367 (42%), Gaps = 54/367 (14%)
Query: 7 AQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTE--TIKDVYRTVSVSQQGKQYLGSAR 64
A F LHG GK WWK A QL++ GYL + + TV ++ +G +L S +
Sbjct: 393 ATFHSHELHGKGKARVEKWWKAFARQLMNAGYLKDCPIVGGFGSTVELTDKGVTWL-SRQ 451
Query: 65 PDHQPPLLLTFNGEMVDAEEHETISSNVG------------------------DLKSSAT 100
P P + +T N E+ E T + G +L S+A
Sbjct: 452 PLSSPSMKMTPNLELKSMENAATANIRPGGSSLGPSILPSVPTNVWLSSRQSVNLSSNAA 511
Query: 101 LENEGFSEA------------DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALAR 148
N ++ M LY L+ R ++A T Y + ++ + +A R
Sbjct: 512 QRNPEVIDSKQQQLQVSRRDISMDLYAKLIILRNEIADETSLPSYRVFSNKNLLDMAKFR 571
Query: 149 PSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNT 208
P++ +L ++ V + +G L I ++S D K E+ + + N
Sbjct: 572 PTSLHKLQALEDVAKEKANVYGTRFLSAISQFCNSNSISTDTKPKEN--LMQHNATLDNQ 629
Query: 209 R----TKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINW 264
+ K++ ++ ++ E+ +++ +A+ G +K T+ ++L EA+ G ++
Sbjct: 630 QKSLFMKMSETARMSYSLYEEENKAVESVASIRG----LKTSTIFNHLSEAIKIGLPLDI 685
Query: 265 TRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKACL-VMENCGISP 323
RL + D I + I++ +L PIK++LPD + + HIK + +++ SP
Sbjct: 686 DRLGISARIIDLITNVIRQPPINSDI-SRLTPIKDQLPDHVQFHHIKVVIAILQRRYGSP 744
Query: 324 E---VIP 327
E VIP
Sbjct: 745 EGASVIP 751
>gi|423616875|ref|ZP_17592709.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD115]
gi|401256899|gb|EJR63104.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD115]
Length = 705
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 104/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPRNDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ RTK A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IDENPNYAETIKTEVVSARTKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ + +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERDLSRQTIENHLIRSFEDGMEVDWQSF-----VPKEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|449517401|ref|XP_004165734.1| PREDICTED: uncharacterized protein LOC101225859 [Cucumis sativus]
Length = 160
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 78 EMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCG 137
EM+ E ++ S G + + ATL++ G SEA+ +L+ +LLEER K+AR T PYA+CG
Sbjct: 3 EMIGENEDDSALSEAGKMDNLATLKS-GLSEAEEKLFQLLLEERMKIARSVRTVPYAICG 61
Query: 138 DQTIKKIALARPSTKARLANIDGVN 162
DQTIK+IAL RPSTK+ + + VN
Sbjct: 62 DQTIKRIALIRPSTKSSVYHNKLVN 86
>gi|423611203|ref|ZP_17587064.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD107]
gi|401248656|gb|EJR54978.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD107]
Length = 705
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 105/212 (49%), Gaps = 28/212 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+++ +IA + + QT+ ++L+ +G +++W + E S I+ A
Sbjct: 624 Q-GINLVEIA----KKRDLSRQTIENHLIRCYEDGMEVDWKSF-----VPAEYESLIENA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACLVM 316
+ + LK IK +LPD+++Y I+A L M
Sbjct: 674 VQ--NAEGGLKSIKEQLPDEVSYFMIRAYLQM 703
>gi|395541837|ref|XP_003772843.1| PREDICTED: Werner syndrome ATP-dependent helicase [Sarcophilus
harrisii]
Length = 1448
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 144/340 (42%), Gaps = 41/340 (12%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTET--IKDVYRTVSVSQQGKQYLGSARPDHQPPL 71
L G GKDH +WWK LA QLIS G+L E K + ++++G+ +L A L
Sbjct: 1024 LFGGGKDHLESWWKALARQLISEGFLEEKSGSKKFAKICVLTKKGRIWLDKATDKSSQTL 1083
Query: 72 LLTFNGEMV-------------DAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLL 118
LL N ++ A+ G S ++ ++ + LY L+
Sbjct: 1084 LLHANEDLCPRKLLKLRVWPTSPAKPLPLPLPLPGSCDSPESISSKE-QQFQTALYCKLM 1142
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
E R+K A P L ++ + +A RPST L NIDGV++ T L++ IR
Sbjct: 1143 EARQKQASEKDIPPALLATNKVLVDMAKMRPSTLESLKNIDGVSEA-KCTMLAPLVEVIR 1201
Query: 179 HLSQKLNLSLD-------GKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQ 231
SQ NL D G ++++ + H+ + +T + ++ E +S+
Sbjct: 1202 AFSQTNNLPTDLFSSPSPGLKEKNSSAKKCEHIPLPKSVSIT------YSLFQEKNMSLW 1255
Query: 232 KIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK 291
IA R+ P+ V +L +AV G+ ++ R GLT + I + I K
Sbjct: 1256 SIAE--SRTMPLP--VVGSHLSQAVKAGYPLDLER----AGLTPHVRKMITDVIQKPPIN 1307
Query: 292 ---DKLKPIKNELPDDITYAHIKACLVMENCGISPEVIPP 328
K+K I+ +P ++ I+ + + PE P
Sbjct: 1308 SDTSKIKAIRTLVPSEVETYLIQIAVALVEKERKPETTLP 1347
>gi|443476000|ref|ZP_21065927.1| ATP-dependent DNA helicase RecQ [Pseudanabaena biceps PCC 7429]
gi|443019101|gb|ELS33248.1| ATP-dependent DNA helicase RecQ [Pseudanabaena biceps PCC 7429]
Length = 769
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 144/313 (46%), Gaps = 36/313 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK++ + L HG+GKD S + W+ L+ LI GYLT+T D Y + ++ + + +
Sbjct: 478 NKKILQHGHENLSTHGIGKDRSLDEWRQLSRSLIHQGYLTQT-TDGYAILKLNDRSWEVM 536
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S R +LL +M E T++ G + +E L+ L
Sbjct: 537 RSQR-----NVLLPIERDM----EPATVTEREGARERPVDVEI---------LFERLRLL 578
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK LA PY + + T+ ++A +P+++ A + GV + + D+ + I
Sbjct: 579 RKNLADEQEVPPYVIFSNATLNQMAEQQPTSRKEFAKLSGVGAKKLEQYADNFIAII--- 635
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPA--KYEAWKMWHEDGLSIQKIANYPG 238
+ +L E + R V ++KL+ A + E M+ E+GL I +IA
Sbjct: 636 -LEHHLQYPPAEPEESITARGKQEAVTPKSKLSKASTQRETLAMY-ENGLDIDEIA---- 689
Query: 239 RSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIK 298
R +K TV +L++ + G+ IN RL +T E + I EA+ +G D L+ +
Sbjct: 690 RDRGLKPATVWTHLVQLIEAGYAINCDRL-----VTPERQNVIYEALEAIG-GDSLRNLF 743
Query: 299 NELPDDITYAHIK 311
+ L ++ TY IK
Sbjct: 744 DHLREEYTYDEIK 756
>gi|365161200|ref|ZP_09357349.1| hypothetical protein HMPREF1014_02812 [Bacillus sp. 7_6_55CFAA_CT2]
gi|363621427|gb|EHL72638.1| hypothetical protein HMPREF1014_02812 [Bacillus sp. 7_6_55CFAA_CT2]
Length = 396
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 104/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 206 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 265
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 266 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 314
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G +++W ++ E S I+ A
Sbjct: 315 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVDWQSF-----VSAEYESLIETA 364
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 365 VQ--NADGGLKSIKEQLPNEVSYFMIRAYL 392
>gi|340382607|ref|XP_003389810.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog, partial
[Amphimedon queenslandica]
Length = 864
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 109/219 (49%), Gaps = 26/219 (11%)
Query: 113 LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDH 172
LY L+ R ++A T P+ + ++ + ++L+RP+T+ L IDGV+Q + G
Sbjct: 585 LYEELVSYRNQIAHETDIPPFMIASNKLLGILSLSRPTTEESLRLIDGVSQQFITKFGMK 644
Query: 173 LLQTIR-----HLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEA----WKMW 223
LL I+ H + + + L+ + T K+ V + R + E + +
Sbjct: 645 LLTKIKEYCTAHPTLRTDTELNKGREDTDTDTGKIQVAIKVRKSIIGPISEKNGSYYDSY 704
Query: 224 HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQE 283
+GLS+++IA+ G ++ QTV+ +L++ G+ +N+ E+G T+EI I +
Sbjct: 705 TREGLSVEEIASRRG----VQVQTVMGHLVDCYEAGYMLNYR----ELGFTEEIERLITD 756
Query: 284 AI------SKVGCKDKLKPIKNELPDDITYAHIKACLVM 316
I S VG +LKPIK +LP+ I Y I+ + +
Sbjct: 757 TIRRPPISSDVG---RLKPIKEQLPEHIEYWQIRMTIAL 792
>gi|428773638|ref|YP_007165426.1| ATP-dependent DNA helicase RecQ [Cyanobacterium stanieri PCC 7202]
gi|428687917|gb|AFZ47777.1| ATP-dependent DNA helicase RecQ [Cyanobacterium stanieri PCC 7202]
Length = 713
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 136/310 (43%), Gaps = 54/310 (17%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
KK+ + L +G+GKDH+++ WK LA L+ Y L D + + +++Q K+ L
Sbjct: 440 KKIYEYGHHLLSTYGIGKDHTTDEWKNLATSLV-YQNLVRQTNDGFNILKINEQSKKILK 498
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
+ ++ A + +TI D S A LE E L + L R
Sbjct: 499 GEK-------------KVYIAVKGKTIKKVTRDTNSQA-LEVEI-------LLNKLKMLR 537
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
KKLA + APY + D T+ +A +P TKA+ A + GVN + + +GD + IR
Sbjct: 538 KKLADLENIAPYVIFNDATLTIMAQMQPDTKAKFAQLSGVNDYKLNKYGDIFISEIRTFI 597
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
Q+ ++L + T T++ + ++ GL+I IA G S
Sbjct: 598 QQ----------------KQLPFQLPTNTQMKTLR------LYQQGLNIADIAKERGLS- 634
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNEL 301
V ++ +SE ++N D + + E I + +G K KLK IK L
Sbjct: 635 -------VSSIVSHLSELIELNQPVTIDNL-VKAEKQKVILNTLKIIGNK-KLKEIKERL 685
Query: 302 PDDITYAHIK 311
PD+ TY IK
Sbjct: 686 PDEYTYDEIK 695
>gi|423390942|ref|ZP_17368168.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG1X1-3]
gi|401636775|gb|EJS54528.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG1X1-3]
Length = 705
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + ++A G S QT+ ++L+ +G +++W + E + I+ A
Sbjct: 624 Q-GIDLNEVAKERGLS----RQTIENHLIRCFEDGMEVDWNSF-----VPAEYEALIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LPD+++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPDEVSYFMIRAYL 701
>gi|229173465|ref|ZP_04301009.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MM3]
gi|228610159|gb|EEK67437.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MM3]
Length = 705
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 18/205 (8%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEILREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLS 229
G H LQ ++H K N + V RK + + L E ++M+ + G+
Sbjct: 575 GSHFLQAVQHFI-KDNPNYAETVKTEVVTERKKSGKASANSHL-----ETYEMYKQ-GID 627
Query: 230 IQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVG 289
+ +IA G S QT+ ++L+ + +G +I+W + E S I+ A+
Sbjct: 628 LDEIAKERGLS----RQTIENHLIRSFEDGMEIDWNSF-----VPAEYESLIETAVQ--N 676
Query: 290 CKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 677 AEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|229018126|ref|ZP_04175001.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1273]
gi|229024308|ref|ZP_04180766.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1272]
gi|228737002|gb|EEL87539.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1272]
gi|228743217|gb|EEL93342.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1273]
Length = 705
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + ++A G S QT+ ++L+ +G +++W + E + I+ A
Sbjct: 624 Q-GIDLNEVAKERGLS----RQTIENHLIRCFEDGMEVDWNSF-----VPAEYEALIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LPD+++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPDEVSYFMIRAYL 701
>gi|7595900|gb|AAF64490.1|AF241636_1 WRN protein [Mus musculus]
Length = 1401
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/400 (23%), Positives = 155/400 (38%), Gaps = 70/400 (17%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQQGKQYLGSARPDHQPPL 71
L G GK+ + +WWKTL++ LI+ G+L E K+ +T S++++G+++LG A P L
Sbjct: 968 LFGAGKEQAESWWKTLSHHLIAEGFLVEVPKENKYIKTCSLTKKGRKWLGEASLQSPPSL 1027
Query: 72 LLTFNGEMV--------------DAEEH-------------------------ETISSNV 92
LL N EM + +H E +SS
Sbjct: 1028 LLQANEEMFPRKVLLPSSNPVSPETTQHSSNQNPAGLTTKQSNLERTHSYKVPEKVSSGT 1087
Query: 93 GDLKSSATLENEGFSEADMQ-------------LYHMLLEERKKLARVTGTAPYALCGDQ 139
K SA + + G S + ++ LY L+E R+K A P L ++
Sbjct: 1088 NIPKKSAVMPSPGTSSSPLEPAISAQELDARTGLYARLVEARQKHANKMDVPPAILATNK 1147
Query: 140 TIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLD--GKVGEHTA 197
+ +A RP+T + IDGV++ LL I+H Q ++ D H
Sbjct: 1148 VLLDMAKMRPTTVENMKQIDGVSEGKAALLAP-LLGVIKHFCQVTSVQTDLLSSAKPHKE 1206
Query: 198 FTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVS 257
K + L + + ++ E + + IA R P+ V +L +AV
Sbjct: 1207 -QEKSQEMEKKDCSLPQSVAVTYTLFQEKKMPLHSIAE--NRLLPL--TAVGMHLAQAVK 1261
Query: 258 EGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD---KLKPIKNELPDDITYAHIKACL 314
G+ ++ R GLT E + I + I K+K I+ +P++I I +
Sbjct: 1262 AGYPLDMER----AGLTPETWKIIMDVIRNPPINSDMYKVKLIRMLVPENIDTYLIHMAI 1317
Query: 315 VMENCGISPEVIPPSQKKGNTDELPSKASETWHAEEPHEV 354
+ G PP PS A +E EV
Sbjct: 1318 EILQSGSDSRTQPPCD-SSRKRRFPSSAESCESCKESKEV 1356
>gi|229190913|ref|ZP_04317904.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ATCC 10876]
gi|228592581|gb|EEK50409.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ATCC 10876]
Length = 705
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 104/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IKENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G +++W ++ E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVDWQSF-----VSAEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NADGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|354474937|ref|XP_003499686.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Cricetulus
griseus]
gi|344242328|gb|EGV98431.1| Werner syndrome ATP-dependent helicase-like [Cricetulus griseus]
Length = 1405
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/363 (24%), Positives = 150/363 (41%), Gaps = 67/363 (18%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQQGKQYLGSARPDHQPPL 71
L G GKD + +WWK L++ LI G+L E K +T S++++G+++LG A P L
Sbjct: 975 LFGTGKDQTESWWKALSHLLIGEGFLIEVPKQNKFVKTCSLTKKGREWLGEASMQSPPSL 1034
Query: 72 LLTFNGEMV--------------DAEEHETISSNVGDLKSSATLE--------------- 102
+L N M + E+H + +G + LE
Sbjct: 1035 VLQANEAMCPKKVLLPSSNPGSSEIEQHSSDQKPIGLTTEQSNLERMYLYKAPEKSSGSN 1094
Query: 103 -------------NEGFSEADMQ---------LYHMLLEERKKLARVTGTAPYALCGDQT 140
+ G SE + LY L+E R+K A P L ++
Sbjct: 1095 ILNKSVGMQSPGKSYGSSEPAISAQELDTRTALYAKLVEARQKHANKMNVPPAILATNKI 1154
Query: 141 IKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLD-GKVGEHTAFT 199
+ +A RP+T + IDGV++ T D LL+ I+H Q ++ D +
Sbjct: 1155 LLDMAKMRPTTAENVKQIDGVSEGKA-TLLDPLLEVIKHFCQVNSVQTDLFSSTKPQEEQ 1213
Query: 200 RKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEG 259
+K VV N L+ + + ++ + +S+ IA R P+ V +L +AV G
Sbjct: 1214 KKSQVVENGECSLSQSVAVTYSLFQDKKMSLHNIAE--NRLLPL--TAVGMHLAQAVKAG 1269
Query: 260 FDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD---KLKPIKNELPDDI-TYAHIKACLV 315
+ ++ R GLT E+ I + I K+K I+ +P++I TY +
Sbjct: 1270 YPLDMER----AGLTPEVQKIITDVIRNPPINSDMYKVKLIRMLVPENIDTYLIHMVIEI 1325
Query: 316 MEN 318
+EN
Sbjct: 1326 LEN 1328
>gi|423465493|ref|ZP_17442261.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6O-1]
gi|402417308|gb|EJV49610.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6O-1]
Length = 705
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKNMCAKMPRNDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IDENPNYVETIKTEVVSERKKSGKASVNSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ + +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERDLSRQTIENHLIRSFEDGMEVDWQSF-----VPKEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|229116327|ref|ZP_04245717.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock1-3]
gi|423379378|ref|ZP_17356662.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG1O-2]
gi|423546120|ref|ZP_17522478.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB5-5]
gi|423624078|ref|ZP_17599856.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD148]
gi|228667159|gb|EEL22611.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock1-3]
gi|401181933|gb|EJQ89080.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB5-5]
gi|401257390|gb|EJR63589.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD148]
gi|401633026|gb|EJS50808.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG1O-2]
Length = 705
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPRNDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IDENPNYVETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ + +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERDLSRQTIENHLIRSFEDGMEVDWQSF-----VPKEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|229097332|ref|ZP_04228294.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-29]
gi|423442425|ref|ZP_17419331.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG4X2-1]
gi|423534838|ref|ZP_17511256.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB2-9]
gi|228686143|gb|EEL40059.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-29]
gi|402414277|gb|EJV46610.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG4X2-1]
gi|402462569|gb|EJV94274.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB2-9]
Length = 705
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPRNDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IDENPNYVETIKTEVVSERKKSGKASVNSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ + +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERDLSRQTIENHLIRSFEDGMEVDWQSF-----VPKEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|423539895|ref|ZP_17516286.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB4-10]
gi|401173430|gb|EJQ80642.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB4-10]
Length = 705
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPRNDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IDENPNYVETIKTEVVSERKKSGKASVNSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ + +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERDLSRQTIENHLIRSFEDGMEVDWQSF-----VPKEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|423447358|ref|ZP_17424237.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG5O-1]
gi|401131354|gb|EJQ39008.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG5O-1]
Length = 705
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPRNDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IDENPNYVETIKTEVVSERKKSGKASVNSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ + +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERDLSRQTIENHLIRSFEDGMEVDWQSF-----VPKEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|407705241|ref|YP_006828826.1| lipoprotein [Bacillus thuringiensis MC28]
gi|407382926|gb|AFU13427.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis MC28]
Length = 705
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPRNDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IDENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ + +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERDLSRQTIENHLIRSFEDGMEVDWQSF-----VPKEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|2130973|dbj|BAA20269.1| WRN typeI [Mus musculus]
gi|2130975|dbj|BAA20270.1| WRN typeII [Mus musculus]
Length = 1401
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 94/400 (23%), Positives = 155/400 (38%), Gaps = 70/400 (17%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQQGKQYLGSARPDHQPPL 71
L G GK+ + +WWKTL++ LI+ G+L E K+ +T S++++G+++LG A P L
Sbjct: 968 LFGAGKEQAESWWKTLSHHLIAEGFLVEVPKENKYIKTCSLTKKGRKWLGEASLQSPPSL 1027
Query: 72 LLTFNGEMV--------------DAEEH-------------------------ETISSNV 92
LL N EM + +H E +SS
Sbjct: 1028 LLQANEEMFPRKVLLPSSNPVSPETTQHSSNQNPAGLTTKQSNLERTHSYKVPEKVSSGT 1087
Query: 93 GDLKSSATLENEGFSEADMQ-------------LYHMLLEERKKLARVTGTAPYALCGDQ 139
K SA + + G S + ++ LY L+E R+K A P L ++
Sbjct: 1088 NIPKKSAVMPSPGTSSSPLEPAISAQELDARTGLYARLVEARQKHANKMDVPPAILAANK 1147
Query: 140 TIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLD--GKVGEHTA 197
+ +A RP+T + IDGV++ L+ I+H Q ++ D H
Sbjct: 1148 VLLDMAKMRPTTVENMKQIDGVSEGKAALLAP-LVGVIKHFCQVTSVQTDLLSSAKPHKE 1206
Query: 198 FTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVS 257
K + L + + ++ E + + IA R P+ V +L +AV
Sbjct: 1207 -QEKSQEMEKKDCSLPQSVAVTYTLFQEKKMPLHSIAE--NRLLPL--TAVGMHLAQAVK 1261
Query: 258 EGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD---KLKPIKNELPDDITYAHIKACL 314
G+ ++ R GLT E + I + I K+K I+ +P++I I +
Sbjct: 1262 AGYPLDMER----AGLTPETWKIIMDVIRNPPINSDMYKVKLIRMLVPENIDTYLIHMAI 1317
Query: 315 VMENCGISPEVIPPSQKKGNTDELPSKASETWHAEEPHEV 354
+ G PP PS A +E EV
Sbjct: 1318 EILQSGSDSRTQPPCD-SSRKRRFPSSAESCESCKESKEV 1356
>gi|229145390|ref|ZP_04273778.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-ST24]
gi|228638062|gb|EEK94504.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-ST24]
Length = 705
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G ++ W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVEWQSF-----VPSEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|52142697|ref|YP_084132.1| ATP-dependent DNA helicase Q [Bacillus cereus E33L]
gi|51976166|gb|AAU17716.1| ATP-dependent DNA helicase Q [Bacillus cereus E33L]
Length = 705
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 102/205 (49%), Gaps = 18/205 (8%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLS 229
G H LQ ++H ++ N + + RK V+ + L E ++M+ + G+
Sbjct: 575 GSHFLQAVQHFIEE-NPNYAETIKTEVVSERKKSGKVSANSHL-----ETYEMYKQ-GID 627
Query: 230 IQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVG 289
+ +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 628 LDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA----- 677
Query: 290 CKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 678 -EGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|228939936|ref|ZP_04102512.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228972828|ref|ZP_04133425.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228979410|ref|ZP_04139744.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis Bt407]
gi|384186880|ref|YP_005572776.1| ATP-dependent DNA helicase recQ [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410675184|ref|YP_006927555.1| putative ATP-dependent DNA helicase RecQ [Bacillus thuringiensis
Bt407]
gi|452199240|ref|YP_007479321.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228780310|gb|EEM28543.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis Bt407]
gi|228786879|gb|EEM34861.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228819727|gb|EEM65776.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326940589|gb|AEA16485.1| ATP-dependent DNA helicase recQ [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409174313|gb|AFV18618.1| putative ATP-dependent DNA helicase RecQ [Bacillus thuringiensis
Bt407]
gi|452104633|gb|AGG01573.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 705
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G ++ W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVEWQSF-----VPSEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|229030497|ref|ZP_04186534.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1271]
gi|228730807|gb|EEL81750.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1271]
Length = 705
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 103/208 (49%), Gaps = 24/208 (11%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P +++ L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQEEGVPPFVIFSDQTLKDMCAKMPQSESELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTK---LTPAKYEAWKMWHED 226
G H LQ ++H ++ + A T K VV + + E ++M+ +
Sbjct: 575 GSHFLQAVQHFIEE---------NPNYAETVKTEVVTEPKKSGKASANSHLETYEMYKQ- 624
Query: 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAIS 286
G+ + IA G S QT+ ++L+ +G +++W + E S I+ A+
Sbjct: 625 GIDLDVIAKERGLS----RQTIENHLIRCFEDGMEVDWNSF-----VPAEYESLIETAVQ 675
Query: 287 KVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK++LP++++Y I+A L
Sbjct: 676 --NAEGGLKSIKDQLPNEVSYFMIRAYL 701
>gi|229161685|ref|ZP_04289665.1| ATP-dependent DNA helicase RecQ [Bacillus cereus R309803]
gi|228621930|gb|EEK78776.1| ATP-dependent DNA helicase RecQ [Bacillus cereus R309803]
Length = 705
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 105/210 (50%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ +++ + E+ + + VV+ R K A E ++M++
Sbjct: 575 GSHFLQAVQNF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYN 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA G S QT+ ++L+ + +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIAKERGLS----RQTIENHLIRSFEDGMEVDWNSF-----VPKEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP +++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPGEVSYFMIRAYL 701
>gi|229196988|ref|ZP_04323727.1| ATP-dependent DNA helicase RecQ [Bacillus cereus m1293]
gi|228586477|gb|EEK44556.1| ATP-dependent DNA helicase RecQ [Bacillus cereus m1293]
Length = 705
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 30/211 (14%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSNSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAK------YEAWKMW 223
G H LQ ++H + E+ + + V T K P K E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVMTERK-KPGKASANSHLETYEMY 622
Query: 224 HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQE 283
+ G+++ +IA G S QT+ ++L+ +G +++W I +A+Q
Sbjct: 623 KQ-GINLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQN 676
Query: 284 AISKVGCKDKLKPIKNELPDDITYAHIKACL 314
A LK IK +LP++++Y I+A L
Sbjct: 677 A------DGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|229046514|ref|ZP_04192169.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH676]
gi|228724876|gb|EEL76178.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH676]
Length = 705
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G ++ W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVEWQSF-----VPSEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|228997737|ref|ZP_04157342.1| ATP-dependent DNA helicase RecQ [Bacillus mycoides Rock3-17]
gi|229005275|ref|ZP_04162990.1| ATP-dependent DNA helicase RecQ [Bacillus mycoides Rock1-4]
gi|228755914|gb|EEM05244.1| ATP-dependent DNA helicase RecQ [Bacillus mycoides Rock1-4]
gi|228761979|gb|EEM10920.1| ATP-dependent DNA helicase RecQ [Bacillus mycoides Rock3-17]
Length = 705
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P ++ L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCTKMPQSENELLQVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLS 229
G H LQ + H ++ N + RK + + L E ++M+ + G
Sbjct: 575 GSHFLQAVIHFMEQ-NPDYAETIKTEVVTERKKSGKASANSHL-----ETYEMYKQ-GTE 627
Query: 230 IQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVG 289
+ IA G S QTV ++L+ EG +++W + E S I+ A+
Sbjct: 628 LSTIAKERGLS----RQTVENHLIRCFEEGMEVDWPSF-----VPTEYESLIETAVQ--N 676
Query: 290 CKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LPD+++Y I+A L
Sbjct: 677 AEGGLKSIKEQLPDEVSYFMIRAYL 701
>gi|423642180|ref|ZP_17617798.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD166]
gi|401277123|gb|EJR83067.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD166]
Length = 705
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVDWKSF-----VPSEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NADGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|152975682|ref|YP_001375199.1| ATP-dependent DNA helicase RecQ [Bacillus cytotoxicus NVH 391-98]
gi|152024434|gb|ABS22204.1| ATP-dependent DNA helicase RecQ [Bacillus cytotoxicus NVH 391-98]
Length = 706
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+ + P + L + G+ +H + +
Sbjct: 516 DHPLFEVLREIRKEIAQSEGVPPFVIFSDQTLTDMCAKMPKNETELLQVKGIGEHKLAKY 575
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ + H + E+ + L VV R KL A E ++M+
Sbjct: 576 GSHFLQAVLHFME-----------ENPNYEETLKTEVVTERKKLGKASKNSHLETYEMY- 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
E G + +IA G S QTV ++L+ EG + W E + E S I+ A
Sbjct: 624 ERGTELSEIAKVRGLS----RQTVENHLIRCSEEGMKVEW-----ESFVPTEYKSLIESA 674
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LPD+++Y I+A L
Sbjct: 675 VQH--AEGGLKSIKEQLPDEVSYFMIRAYL 702
>gi|340382611|ref|XP_003389812.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Amphimedon
queenslandica]
Length = 1072
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 26/219 (11%)
Query: 113 LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDH 172
LY L+ R ++A T P+ + ++ + ++L+RP+ + L IDGV+Q + G
Sbjct: 796 LYEELVSYRNQMAHETDIPPFMIASNKLLGNLSLSRPTAEESLRLIDGVSQQFITKFGMK 855
Query: 173 LLQTIR-----HLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEA----WKMW 223
LL I+ H + + + L + T ++ V + R + E + +
Sbjct: 856 LLTKIKEYCTAHPTLRTDTELSKGREDTDTDTGEIQVAIKVRKSIIGPISEKNGSYYDSY 915
Query: 224 HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQE 283
+GLS+++IA+ G ++ QTV+ +L++ G+ +N+ E+G T+EI I +
Sbjct: 916 TREGLSVEEIASRRG----VQAQTVMGHLVDCYEAGYMLNYR----ELGFTEEIERLITD 967
Query: 284 AI------SKVGCKDKLKPIKNELPDDITYAHIKACLVM 316
I S VG +LKPIK +LP+ I Y IK + +
Sbjct: 968 TIRRPPISSDVG---RLKPIKEQLPEHIEYWQIKMAIAL 1003
>gi|229103419|ref|ZP_04234101.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-28]
gi|228679915|gb|EEL34110.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-28]
Length = 705
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 102/207 (49%), Gaps = 28/207 (13%)
Query: 113 LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDH 172
L+ +L E RK++A+ G P+ + DQT+K + P + L + G+ +H ++ +G H
Sbjct: 518 LFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPRNDSELLTVKGIGEHKLVKYGSH 577
Query: 173 LLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWHEDG 227
LQ ++H + E+ + + VV+ R K A E ++M+ + G
Sbjct: 578 FLQAVQHF-----------IDENPNYAETIKTEVVSERKKSGKASANSHLETYEMYKQ-G 625
Query: 228 LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISK 287
+ + +IA + + QT+ ++L+ + +G +++W + E S I+ A+
Sbjct: 626 IDLNEIA----KERDLSRQTIENHLIRSFEDGMEVDWQSF-----VPKEYESLIETAVQ- 675
Query: 288 VGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 676 -NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|196041721|ref|ZP_03109012.1| ATP-dependent DNA helicase RecQ [Bacillus cereus NVH0597-99]
gi|196027490|gb|EDX66106.1| ATP-dependent DNA helicase RecQ [Bacillus cereus NVH0597-99]
Length = 705
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLT-----PAKYEAWKMWH 224
G H LQ ++H + E+ + + V T K T + E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVTERKKTGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+D + + +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 QD-IDLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 678 ------EGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|196043483|ref|ZP_03110721.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 03BB108]
gi|225864791|ref|YP_002750169.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 03BB102]
gi|196025792|gb|EDX64461.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 03BB108]
gi|225790780|gb|ACO30997.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 03BB102]
Length = 705
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLT-----PAKYEAWKMWH 224
G H LQ ++H + E+ + + V T K T + E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVTERKKTGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+D + + +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 QD-IDLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 678 ------EGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|118478170|ref|YP_895321.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis str. Al
Hakam]
gi|229185033|ref|ZP_04312223.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BGSC 6E1]
gi|376266680|ref|YP_005119392.1| ATP-dependent DNA helicase RecQ [Bacillus cereus F837/76]
gi|118417395|gb|ABK85814.1| ATP-dependent DNA helicase, RecQ-like protein [Bacillus
thuringiensis str. Al Hakam]
gi|228598508|gb|EEK56138.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BGSC 6E1]
gi|364512480|gb|AEW55879.1| ATP-dependent DNA helicase RecQ [Bacillus cereus F837/76]
Length = 705
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLT-----PAKYEAWKMWH 224
G H LQ ++H + E+ + + V T K T + E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVTERKKTGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+D + + +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 QD-IDLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 678 ------EGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|49479115|ref|YP_036901.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|301054339|ref|YP_003792550.1| ATP-dependent DNA helicase RecQ [Bacillus cereus biovar anthracis
str. CI]
gi|49330671|gb|AAT61317.1| ATP-dependent DNA helicase (RecQ) [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|300376508|gb|ADK05412.1| ATP-dependent DNA helicase RecQ [Bacillus cereus biovar anthracis
str. CI]
Length = 705
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLT-----PAKYEAWKMWH 224
G H LQ ++H + E+ + + V T K T + E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVTERKKTGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+D + + +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 QD-IDLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 678 ------EGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|228953148|ref|ZP_04115207.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229080004|ref|ZP_04212535.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock4-2]
gi|229151025|ref|ZP_04279236.1| ATP-dependent DNA helicase RecQ [Bacillus cereus m1550]
gi|423424939|ref|ZP_17401970.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG3X2-2]
gi|423436318|ref|ZP_17413299.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG4X12-1]
gi|423506474|ref|ZP_17483064.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HD73]
gi|449089824|ref|YP_007422265.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228632585|gb|EEK89203.1| ATP-dependent DNA helicase RecQ [Bacillus cereus m1550]
gi|228703383|gb|EEL55838.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock4-2]
gi|228806563|gb|EEM53123.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|401113711|gb|EJQ21580.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG3X2-2]
gi|401122932|gb|EJQ30716.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG4X12-1]
gi|402447915|gb|EJV79764.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HD73]
gi|449023581|gb|AGE78744.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 705
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQNDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVDWQSF-----VPAEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|229070293|ref|ZP_04203543.1| ATP-dependent DNA helicase RecQ [Bacillus cereus F65185]
gi|228712857|gb|EEL64782.1| ATP-dependent DNA helicase RecQ [Bacillus cereus F65185]
Length = 705
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQNDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVDWQSF-----VPAEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|423482562|ref|ZP_17459252.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6X1-2]
gi|401143866|gb|EJQ51400.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6X1-2]
Length = 705
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA G S QT+ ++L+ +G +++W + E + I+ A
Sbjct: 624 Q-GIDLNEIAKDRGLS----RQTIENHLIRCFEDGMEVDWNSF-----VPAEYETLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|228921484|ref|ZP_04084807.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|423581092|ref|ZP_17557203.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD014]
gi|423636460|ref|ZP_17612113.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD156]
gi|228838257|gb|EEM83575.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|401215857|gb|EJR22572.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD014]
gi|401274811|gb|EJR80780.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD156]
Length = 705
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IKENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVDWQSF-----VPAEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NADGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|423419182|ref|ZP_17396271.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG3X2-1]
gi|401105788|gb|EJQ13755.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG3X2-1]
Length = 705
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA G S QT+ ++L+ +G +++W + E + I+ A
Sbjct: 624 Q-GIDLNEIAKDRGLS----RQTIENHLIRCFEDGMEVDWNSF-----VPAEYETLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|228959047|ref|ZP_04120748.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|423627884|ref|ZP_17603633.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD154]
gi|228800708|gb|EEM47624.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|401271181|gb|EJR77199.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD154]
Length = 705
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKAEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVDWQSF-----VPAEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NADGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|423551448|ref|ZP_17527775.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ISP3191]
gi|401187286|gb|EJQ94359.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ISP3191]
Length = 705
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHLLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLT-----PAKYEAWKMWH 224
G H LQ ++H + E+ + + V T K T + E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVTERKKTGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+D + + +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 QD-IDLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 678 ------EGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|196032153|ref|ZP_03099567.1| ATP-dependent DNA helicase RecQ [Bacillus cereus W]
gi|228915416|ref|ZP_04079009.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228927868|ref|ZP_04090916.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228934090|ref|ZP_04096931.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228946431|ref|ZP_04108750.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|195994904|gb|EDX58858.1| ATP-dependent DNA helicase RecQ [Bacillus cereus W]
gi|228813235|gb|EEM59537.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228825604|gb|EEM71396.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228831931|gb|EEM77520.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228844359|gb|EEM89417.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 705
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 Q-GIDLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 678 ------EGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|218903941|ref|YP_002451775.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH820]
gi|218536429|gb|ACK88827.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH820]
Length = 705
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 Q-GIDLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 678 ------EGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|30020934|ref|NP_832565.1| ATP-dependent DNA helicase recQ [Bacillus cereus ATCC 14579]
gi|229128155|ref|ZP_04257137.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-Cer4]
gi|29896487|gb|AAP09766.1| ATP-dependent DNA helicase recQ [Bacillus cereus ATCC 14579]
gi|228655430|gb|EEL11286.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-Cer4]
Length = 705
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVDWKSF-----VPAEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NADGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|423384359|ref|ZP_17361615.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG1X1-2]
gi|423529268|ref|ZP_17505713.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB1-1]
gi|401640260|gb|EJS57992.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG1X1-2]
gi|402448697|gb|EJV80536.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB1-1]
Length = 705
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G ++ W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVEWQSF-----VPAEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|423662335|ref|ZP_17637504.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VDM022]
gi|401297954|gb|EJS03559.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VDM022]
Length = 705
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 103/208 (49%), Gaps = 24/208 (11%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTK---LTPAKYEAWKMWHED 226
G H LQ ++H + + A T K VV ++ + E ++M+ +
Sbjct: 575 GSHFLQAVQHFIED---------NPNYAETIKTEVVSESKKSGKASANSHLETYEMYKQ- 624
Query: 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAIS 286
G+ + +IA + + QT+ ++L+ +G +++W + E S I+ A+
Sbjct: 625 GIDLDEIA----KERSLSRQTIENHLIRCFEDGMEVDWNSF-----VPAEYESLIETAVQ 675
Query: 287 KVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK++LP++++Y I+A L
Sbjct: 676 --NAEGGLKSIKDQLPNEVSYFMIRAYL 701
>gi|423655607|ref|ZP_17630906.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD200]
gi|401292875|gb|EJR98529.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD200]
Length = 705
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVDWKSF-----VPAEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NADGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|296503352|ref|YP_003665052.1| ATP-dependent DNA helicase recQ [Bacillus thuringiensis BMB171]
gi|296324404|gb|ADH07332.1| ATP-dependent DNA helicase recQ [Bacillus thuringiensis BMB171]
Length = 705
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVDWKSF-----VPAEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NADGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|229091823|ref|ZP_04223018.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-42]
gi|228691513|gb|EEL45269.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-42]
Length = 705
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IDENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 Q-GIDLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
LK IK +LP++++Y I+A L
Sbjct: 678 ------DGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|229012075|ref|ZP_04169254.1| ATP-dependent DNA helicase RecQ [Bacillus mycoides DSM 2048]
gi|229133703|ref|ZP_04262529.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-ST196]
gi|229167360|ref|ZP_04295098.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH621]
gi|423487941|ref|ZP_17464623.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BtB2-4]
gi|423493663|ref|ZP_17470307.1| ATP-dependent DNA helicase RecQ [Bacillus cereus CER057]
gi|423499545|ref|ZP_17476162.1| ATP-dependent DNA helicase RecQ [Bacillus cereus CER074]
gi|423599875|ref|ZP_17575875.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD078]
gi|228615922|gb|EEK73009.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH621]
gi|228649738|gb|EEL05747.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-ST196]
gi|228749163|gb|EEL99009.1| ATP-dependent DNA helicase RecQ [Bacillus mycoides DSM 2048]
gi|401153334|gb|EJQ60761.1| ATP-dependent DNA helicase RecQ [Bacillus cereus CER057]
gi|401156803|gb|EJQ64205.1| ATP-dependent DNA helicase RecQ [Bacillus cereus CER074]
gi|401234562|gb|EJR41040.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD078]
gi|402436006|gb|EJV68039.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BtB2-4]
Length = 705
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 103/208 (49%), Gaps = 24/208 (11%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTK---LTPAKYEAWKMWHED 226
G H LQ ++H + + A T K VV ++ + E ++M+ +
Sbjct: 575 GSHFLQAVQHFIED---------NPNYAETIKTEVVSESKKSGKASANSHLETYEMYKQ- 624
Query: 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAIS 286
G+ + +IA + + QT+ ++L+ +G +++W + E S I+ A+
Sbjct: 625 GIDLDEIA----KERSLSRQTIENHLIRCFEDGMEVDWNSF-----VPAEYESLIETAVQ 675
Query: 287 KVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK++LP++++Y I+A L
Sbjct: 676 --NAEGGLKSIKDQLPNEVSYFMIRAYL 701
>gi|26342697|dbj|BAC35005.1| unnamed protein product [Mus musculus]
Length = 436
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 88/379 (23%), Positives = 151/379 (39%), Gaps = 79/379 (20%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQQGKQYLGSARPDHQPPL 71
L G GK+ + +WWKTL++ LI+ G+L E K+ +T S++++G+++LG A P L
Sbjct: 3 LFGAGKEQAESWWKTLSHHLIAEGFLVEVPKENKYIKTCSLTKKGRKWLGEASSQSPPSL 62
Query: 72 LLTFNGEMV--------------DAEEH-------------------------ETISSNV 92
LL N EM + +H E +SS
Sbjct: 63 LLQANEEMFPRKVLLPSSNPVSPETTQHSSNQNPAGLTTKQSNLERTHSYKVPEKVSSGT 122
Query: 93 GDLKSSATLENEGFSEADMQ-------------LYHMLLEERKKLARVTGTAPYALCGDQ 139
K SA + + G S + ++ LY L+E R+K A P L ++
Sbjct: 123 NIPKKSAVMPSPGTSSSPLEPAISAQELDARTGLYARLVEARQKHANKMDVPPAILATNK 182
Query: 140 TIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLD-------GKV 192
+ +A RP+T + IDGV++ LL+ I+H Q ++ D K
Sbjct: 183 VLLDMAKMRPTTVENMKQIDGVSEGKAALLAP-LLEVIKHFCQVTSVQTDLLSSAKPHKE 241
Query: 193 GEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYL 252
E + K + +T + ++ E + + IA R P+ + +L
Sbjct: 242 QEKSQEMEKKDCSLPQSVAVT------YTLFQEKKMPLHSIAE--NRLLPLTAAGM--HL 291
Query: 253 LEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD---KLKPIKNELPDDITYAH 309
+AV G+ ++ R GLT E + I + I K+K I+ +P+++
Sbjct: 292 AQAVKAGYPLDMER----AGLTPETWKIIMDVIRNPPINSDMYKVKLIRMLVPENLDTYL 347
Query: 310 IKACLVMENCGISPEVIPP 328
I + + G PP
Sbjct: 348 IHMAIEILQSGSDSRTQPP 366
>gi|229110265|ref|ZP_04239839.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock1-15]
gi|423586762|ref|ZP_17562849.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD045]
gi|423648707|ref|ZP_17624277.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD169]
gi|228673251|gb|EEL28521.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock1-15]
gi|401230280|gb|EJR36788.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD045]
gi|401284205|gb|EJR90071.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD169]
Length = 705
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVDWKSF-----VPAEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NADGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|165868634|ref|ZP_02213294.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0488]
gi|167631805|ref|ZP_02390132.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0442]
gi|167637571|ref|ZP_02395850.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0193]
gi|170685476|ref|ZP_02876700.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0465]
gi|177649646|ref|ZP_02932648.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0174]
gi|190565352|ref|ZP_03018272.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str.
Tsiankovskii-I]
gi|227814370|ref|YP_002814379.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. CDC 684]
gi|254685381|ref|ZP_05149241.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str.
CNEVA-9066]
gi|254722788|ref|ZP_05184576.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A1055]
gi|254737836|ref|ZP_05195539.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Western
North America USA6153]
gi|254742990|ref|ZP_05200675.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Kruger B]
gi|254752151|ref|ZP_05204188.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Vollum]
gi|254760670|ref|ZP_05212694.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Australia
94]
gi|386736560|ref|YP_006209741.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. H9401]
gi|421510247|ref|ZP_15957143.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. UR-1]
gi|421636606|ref|ZP_16077205.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. BF1]
gi|164715360|gb|EDR20877.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0488]
gi|167514120|gb|EDR89487.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0193]
gi|167532103|gb|EDR94739.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0442]
gi|170670836|gb|EDT21575.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0465]
gi|172084720|gb|EDT69778.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0174]
gi|190563379|gb|EDV17344.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str.
Tsiankovskii-I]
gi|227007076|gb|ACP16819.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. CDC 684]
gi|384386412|gb|AFH84073.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. H9401]
gi|401819703|gb|EJT18877.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. UR-1]
gi|403397134|gb|EJY94371.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. BF1]
Length = 705
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 Q-GIDLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 678 ------EGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|30262788|ref|NP_845165.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Ames]
gi|47528112|ref|YP_019461.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. 'Ames
Ancestor']
gi|49185634|ref|YP_028886.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Sterne]
gi|65320112|ref|ZP_00393071.1| COG0514: Superfamily II DNA helicase [Bacillus anthracis str.
A2012]
gi|170704762|ref|ZP_02895228.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0389]
gi|229603340|ref|YP_002867093.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0248]
gi|30257420|gb|AAP26651.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Ames]
gi|47503260|gb|AAT31936.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. 'Ames
Ancestor']
gi|49179561|gb|AAT54937.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Sterne]
gi|170130563|gb|EDS99424.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0389]
gi|229267748|gb|ACQ49385.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0248]
Length = 705
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 Q-GIDLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 678 ------EGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|423605483|ref|ZP_17581376.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD102]
gi|401242838|gb|EJR49209.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD102]
Length = 705
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSNSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVTERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+++ +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 Q-GINLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
LK IK +LP++++Y I+A L
Sbjct: 678 ------DGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|423668466|ref|ZP_17643495.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VDM034]
gi|423675407|ref|ZP_17650346.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VDM062]
gi|401301670|gb|EJS07257.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VDM034]
gi|401308431|gb|EJS13826.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VDM062]
Length = 705
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 103/208 (49%), Gaps = 24/208 (11%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTK---LTPAKYEAWKMWHED 226
G H LQ ++H + + A T K VV ++ + E ++M+ +
Sbjct: 575 GSHFLQAVQHFIED---------NPNYAETIKTEVVSESKKSGKASANSHLETYEMYKQ- 624
Query: 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAIS 286
G+ + +IA + + QT+ ++L+ +G +++W + E S I+ A+
Sbjct: 625 GIDLDEIA----KERSLSRQTIENHLIRCFEDGMEVDWNSF-----VPAEYESLIETAVQ 675
Query: 287 KVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK++LP++++Y I+A L
Sbjct: 676 --NAEGGLKSIKDQLPNEVSYFMIRAYL 701
>gi|228985910|ref|ZP_04146058.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228773839|gb|EEM22257.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 705
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IDENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 Q-GIDLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
LK IK +LP++++Y I+A L
Sbjct: 678 ------DGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|229122366|ref|ZP_04251580.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 95/8201]
gi|228661215|gb|EEL16841.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 95/8201]
Length = 705
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 102/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA G S QT+ ++L+ +G +++W + E I+ A
Sbjct: 624 Q-GIDLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSF-----VPPEYEQLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|47567630|ref|ZP_00238340.1| ATP-dependent DNA helicase RecQ [Bacillus cereus G9241]
gi|47555607|gb|EAL13948.1| ATP-dependent DNA helicase RecQ [Bacillus cereus G9241]
Length = 705
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IDENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 Q-GIDLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
LK IK +LP++++Y I+A L
Sbjct: 678 ------DGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|170763502|ref|NP_035851.3| Werner syndrome ATP-dependent helicase homolog [Mus musculus]
gi|170763504|ref|NP_001116294.1| Werner syndrome ATP-dependent helicase homolog [Mus musculus]
gi|342187359|sp|O09053.3|WRN_MOUSE RecName: Full=Werner syndrome ATP-dependent helicase homolog;
AltName: Full=Exonuclease WRN
gi|3885838|gb|AAC78077.1| Wrn protein [Mus musculus]
gi|29748014|gb|AAH50921.1| Wrn protein [Mus musculus]
gi|38173728|gb|AAH60700.1| Wrn protein [Mus musculus]
Length = 1401
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 87/374 (23%), Positives = 149/374 (39%), Gaps = 69/374 (18%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQQGKQYLGSARPDHQPPL 71
L G GK+ + +WWKTL++ LI+ G+L E K+ +T S++++G+++LG A P L
Sbjct: 968 LFGAGKEQAESWWKTLSHHLIAEGFLVEVPKENKYIKTCSLTKKGRKWLGEASSQSPPSL 1027
Query: 72 LLTFNGEMV--------------DAEEH-------------------------ETISSNV 92
LL N EM + +H E +SS
Sbjct: 1028 LLQANEEMFPRKVLLPSSNPVSPETTQHSSNQNPAGLTTKQSNLERTHSYKVPEKVSSGT 1087
Query: 93 GDLKSSATLENEGFSEADMQ-------------LYHMLLEERKKLARVTGTAPYALCGDQ 139
K SA + + G S + ++ LY L+E R+K A P L ++
Sbjct: 1088 NIPKKSAVMPSPGTSSSPLEPAISAQELDARTGLYARLVEARQKHANKMDVPPAILATNK 1147
Query: 140 TIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLD--GKVGEHTA 197
+ +A RP+T + IDGV++ LL+ I+H Q ++ D H
Sbjct: 1148 VLLDMAKMRPTTVENMKQIDGVSEGKAALLAP-LLEVIKHFCQVTSVQTDLLSSAKPHKE 1206
Query: 198 FTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVS 257
K + L + + ++ E + + IA R P+ + +L +AV
Sbjct: 1207 -QEKSQEMEKKDCSLPQSVAVTYTLFQEKKMPLHSIAE--NRLLPLTAAGM--HLAQAVK 1261
Query: 258 EGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD---KLKPIKNELPDDITYAHIKACL 314
G+ ++ R GLT E + I + I K+K I+ +P+++ I +
Sbjct: 1262 AGYPLDMER----AGLTPETWKIIMDVIRNPPINSDMYKVKLIRMLVPENLDTYLIHMAI 1317
Query: 315 VMENCGISPEVIPP 328
+ G PP
Sbjct: 1318 EILQSGSDSRTQPP 1331
>gi|228965757|ref|ZP_04126836.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
sotto str. T04001]
gi|402559862|ref|YP_006602586.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis HD-771]
gi|423360197|ref|ZP_17337700.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD022]
gi|228793958|gb|EEM41482.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
sotto str. T04001]
gi|401082287|gb|EJP90557.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD022]
gi|401788514|gb|AFQ14553.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis HD-771]
Length = 705
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 104/209 (49%), Gaps = 26/209 (12%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAK----YEAWKMWHE 225
G H LQ ++H ++ + A T K VV R K A E ++M+ +
Sbjct: 575 GSHFLQAVQHFIEE---------NPNYAETIKTEVVAE-RKKSGKASANSHLETYEMYKQ 624
Query: 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
G+ + +IA + + QT+ ++L+ +G +++W + E S I+ A+
Sbjct: 625 -GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVDWQSF-----VPAEYESLIETAV 674
Query: 286 SKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 675 Q--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|229060489|ref|ZP_04197852.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH603]
gi|228718872|gb|EEL70493.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH603]
Length = 705
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 104/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G LQT++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSQFLQTVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + ++A G S QT+ ++L+ +G +++W + E + I+ A
Sbjct: 624 Q-GIDLNEVAKERGLS----RQTIENHLIRCFEDGMEVDWNSF-----VPAEYEALIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK++LP++++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKDQLPNEVSYFMIRAYL 701
>gi|386716047|ref|YP_006182371.1| ATP-dependent DNA helicase RecQ [Halobacillus halophilus DSM 2266]
gi|384075604|emb|CCG47100.1| ATP-dependent DNA helicase RecQ [Halobacillus halophilus DSM 2266]
Length = 713
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 18/220 (8%)
Query: 95 LKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKAR 154
L S T ++E AD + L + RK +A G PY + D T+K+ + P K
Sbjct: 505 LVESTTAKHESNYNAD--YFEELRQIRKSIADEAGLPPYVIFSDATLKEFTIYLPENKNE 562
Query: 155 LANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTP 214
+ I GV + +G+ L+TIR +++ + + +K P
Sbjct: 563 MLAIKGVGERKFEQYGETFLETIRPWARETDAKPVPDKSSSVSIRKK------EANDERP 616
Query: 215 AKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLT 274
+ ++MW E+ I +IA G S+ QT+ ++L + EG ++NW R +E
Sbjct: 617 SYQVTFEMWKEESKEIGEIAKERGLSS----QTIENHLFRSAHEGLELNWDRWFNEEQEK 672
Query: 275 DEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ I ++E + KLKP+K LP+D TY+ IKA L
Sbjct: 673 N-ILQKLEEMEER-----KLKPLKEALPEDYTYSMIKAVL 706
>gi|402556977|ref|YP_006598248.1| ATP-dependent DNA helicase RecQ [Bacillus cereus FRI-35]
gi|401798187|gb|AFQ12046.1| ATP-dependent DNA helicase RecQ [Bacillus cereus FRI-35]
Length = 705
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVTERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+++ +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 Q-GINLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
LK IK +LP++++Y I+A L
Sbjct: 678 ------DGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|384180700|ref|YP_005566462.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324326784|gb|ADY22044.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 705
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IDENPNYAETIKTEVVTERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+++ +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 Q-GINLAEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
LK IK +LP++++Y I+A L
Sbjct: 678 ------DGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|42781899|ref|NP_979146.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ATCC 10987]
gi|217960255|ref|YP_002338815.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH187]
gi|222096315|ref|YP_002530372.1| ATP-dependent DNA helicase recq [Bacillus cereus Q1]
gi|229139452|ref|ZP_04268023.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-ST26]
gi|375284769|ref|YP_005105208.1| ATP-dependent DNA helicase RecQ [Bacillus cereus NC7401]
gi|423352562|ref|ZP_17330189.1| ATP-dependent DNA helicase RecQ [Bacillus cereus IS075]
gi|423372701|ref|ZP_17350041.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AND1407]
gi|423568327|ref|ZP_17544574.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MSX-A12]
gi|42737823|gb|AAS41754.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ATCC 10987]
gi|217065979|gb|ACJ80229.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH187]
gi|221240373|gb|ACM13083.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Q1]
gi|228643999|gb|EEL00260.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-ST26]
gi|358353296|dbj|BAL18468.1| ATP-dependent DNA helicase RecQ [Bacillus cereus NC7401]
gi|401091661|gb|EJP99801.1| ATP-dependent DNA helicase RecQ [Bacillus cereus IS075]
gi|401099138|gb|EJQ07148.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AND1407]
gi|401210615|gb|EJR17366.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MSX-A12]
Length = 705
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVTERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+++ +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 Q-GINLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
LK IK +LP++++Y I+A L
Sbjct: 678 ------DGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|423575539|ref|ZP_17551658.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MSX-D12]
gi|401208864|gb|EJR15624.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MSX-D12]
Length = 705
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVTERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+++ +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 Q-GINLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
LK IK +LP++++Y I+A L
Sbjct: 678 ------DGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|229156395|ref|ZP_04284489.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ATCC 4342]
gi|228627072|gb|EEK83805.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ATCC 4342]
Length = 705
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 100/210 (47%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQNDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IDENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 Q-GIDLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAKYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
LK IK +LP++++Y I+A L
Sbjct: 678 ------DGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|206973530|ref|ZP_03234448.1| ATP-dependent DNA helicase RecQ [Bacillus cereus H3081.97]
gi|206747686|gb|EDZ59075.1| ATP-dependent DNA helicase RecQ [Bacillus cereus H3081.97]
Length = 705
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVTERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+++ +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 Q-GINLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
LK IK +LP++++Y I+A L
Sbjct: 678 ------DGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|423453794|ref|ZP_17430647.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG5X1-1]
gi|401137476|gb|EJQ45057.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG5X1-1]
Length = 705
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAK----YEAWKMWHE 225
G H LQ ++H + D T T VV+ R K A E ++M+ +
Sbjct: 575 GFHFLQAVQHFIE------DNPNYAETIKTE----VVSERKKSGKASANSHIETYEMYKQ 624
Query: 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
G+ + +IA G S QT+ ++L+ + +G ++ W I +A+Q A
Sbjct: 625 -GIDLNEIAKDRGLS----RQTIENHLIRSFEDGMEVEWQSFV-PAAYEALIETAVQNA- 677
Query: 286 SKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LPD+++Y I+A L
Sbjct: 678 -----EGGLKSIKEQLPDEVSYFMIRAYL 701
>gi|449462780|ref|XP_004149118.1| PREDICTED: putative ATP-dependent RNA helicase R290-like [Cucumis
sativus]
Length = 352
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 38/137 (27%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYG------YLTETIKDV-------- 46
+KK+ +AQFD L LHGLGK++SSNWWK LA QLIS G +LT+ ++ +
Sbjct: 211 AKKIRNAQFDMLPLHGLGKEYSSNWWKALASQLISNGSVLNATFLTKVLEKLKHFPKTGY 270
Query: 47 -----------------------YRTVSVSQQGKQYLGSARPDHQPPLLLTFNGEMVDAE 83
Y+ + +S +GK++L S R D PPL+L EM+
Sbjct: 271 NFALLVAGNALLFDREHTRCLQNYKVI-ISAKGKKFLNSVRQDCLPPLILPVTSEMIGEN 329
Query: 84 EHETISSNVGDLKSSAT 100
E ++ S G +++ AT
Sbjct: 330 EDDSALSEAGKMENLAT 346
>gi|423459146|ref|ZP_17435943.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG5X2-1]
gi|401144224|gb|EJQ51754.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG5X2-1]
Length = 705
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA G S QT+ ++L+ +G +++W I +A+Q A
Sbjct: 624 Q-GIDLDEIAKERGLS----RQTIENHLIRCFEDGMEVDWNSFV-PAEYEQLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
LK IK +LP++++Y I+A L
Sbjct: 678 ------DGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|434389644|ref|YP_007100255.1| ATP-dependent DNA helicase RecQ [Chamaesiphon minutus PCC 6605]
gi|428020634|gb|AFY96728.1| ATP-dependent DNA helicase RecQ [Chamaesiphon minutus PCC 6605]
Length = 743
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 142/310 (45%), Gaps = 39/310 (12%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
KV+ D L +G+GKD S + W+ L L+ G + ET D Y ++++ + L S
Sbjct: 460 KVLKNGHDTLSTYGIGKDRSVDEWRMLGRSLLHQGLVDET-SDGYSVLTLNGLSMEILKS 518
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQ-LYHMLLEER 121
R + + +K S + A++Q LY+ L + R
Sbjct: 519 QR----------------------KVEIAISPIKPSVAANEVSTNTAEIQALYNRLHKLR 556
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
K+ A APY + D +++ +A +P T A+ A I GV + +G+ IR
Sbjct: 557 KQYADANKVAPYVIFADSSLRLMAQQQPQTLAQFAQISGVGARKLAQYGEMFTGEIRAFR 616
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
+ L V + T L V T++ ++ + ++++ GLS+ IA +
Sbjct: 617 AESGLP----VLTESDPTPPLPVSAPTKSDVSHTHLQTLDLYNQ-GLSLAAIA----KKR 667
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNEL 301
++E T+ D+L++ + G++++ R+ + + +AI +AI+ VG +KL PIK L
Sbjct: 668 SVQENTIYDHLVKLLDCGYEVDLDRI-----VPSDRAAAIAQAITAVG-DEKLTPIKAHL 721
Query: 302 PDDITYAHIK 311
DD +Y IK
Sbjct: 722 GDDYSYEEIK 731
>gi|218232745|ref|YP_002367534.1| ATP-dependent DNA helicase RecQ [Bacillus cereus B4264]
gi|218160702|gb|ACK60694.1| ATP-dependent DNA helicase RecQ [Bacillus cereus B4264]
Length = 705
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVDWHSF-----VPAEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NADGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|228908560|ref|ZP_04072400.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis IBL 200]
gi|228851113|gb|EEM95927.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis IBL 200]
Length = 705
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 102/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + E+ + + VV R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEENPNYAETIKTEVVAERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G ++ W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVEWQSF-----VPAEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|75762555|ref|ZP_00742410.1| ATP-dependent DNA helicase recQ [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218897840|ref|YP_002446251.1| ATP-dependent DNA helicase RecQ [Bacillus cereus G9842]
gi|228901356|ref|ZP_04065548.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis IBL 4222]
gi|423562776|ref|ZP_17539052.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MSX-A1]
gi|434375793|ref|YP_006610437.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis HD-789]
gi|74489957|gb|EAO53318.1| ATP-dependent DNA helicase recQ [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218543132|gb|ACK95526.1| ATP-dependent DNA helicase RecQ [Bacillus cereus G9842]
gi|228858280|gb|EEN02748.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis IBL 4222]
gi|401199914|gb|EJR06807.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MSX-A1]
gi|401874350|gb|AFQ26517.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis HD-789]
Length = 705
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 26/209 (12%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAK----YEAWKMWHE 225
G H LQ ++H ++ + A T K VV R K A E ++M+ +
Sbjct: 575 GSHFLQAVQHFIEE---------NPNYAETIKTEVVAE-RKKSGKASANSHLETYEMYKQ 624
Query: 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
G+ + +IA + + QT+ ++L+ +G ++ W + E S I+ A+
Sbjct: 625 -GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVEWQSF-----VPAEYESLIETAV 674
Query: 286 SKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 675 Q--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|423402487|ref|ZP_17379660.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG2X1-2]
gi|423476816|ref|ZP_17453531.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6X1-1]
gi|401650759|gb|EJS68328.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG2X1-2]
gi|402433123|gb|EJV65178.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6X1-1]
Length = 705
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H + +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLAKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAK----YEAWKMWHE 225
G H LQ ++H K + A T K VV R K A E ++M+ +
Sbjct: 575 GSHFLQAVQHFI---------KDNPNYAETVKTEVVTE-RKKSGKASANSHLETYEMYKQ 624
Query: 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
G+ + +IA G S QT+ ++L+ + +G I+W + E S I+ A+
Sbjct: 625 -GIDLDEIAKERGLS----RQTIENHLIRSFEDGMGIDWNSF-----VPAEYESLIETAV 674
Query: 286 SKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 675 Q--NAEGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|423510797|ref|ZP_17487328.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuA2-1]
gi|402453750|gb|EJV85550.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuA2-1]
Length = 705
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 103/208 (49%), Gaps = 24/208 (11%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTK---LTPAKYEAWKMWHED 226
G H LQ ++H + + A T K VV ++ + E ++M+ +
Sbjct: 575 GSHFLQAVQHFIED---------NPNYAETIKTEVVSESKKSGKASANSHLETYEMYKQ- 624
Query: 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAIS 286
G+ + +IA + + QT+ ++L+ +G +++W + E + I+ A+
Sbjct: 625 GIDLDEIA----KERSLSRQTIENHLIRCFEDGMEVDWNSF-----VPAEYEALIETAVQ 675
Query: 287 KVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK++LP++++Y I+A L
Sbjct: 676 --NAEGGLKSIKDQLPNEVSYFMIRAYL 701
>gi|327279914|ref|XP_003224700.1| PREDICTED: Werner syndrome ATP-dependent helicase-like [Anolis
carolinensis]
Length = 1327
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 133/284 (46%), Gaps = 25/284 (8%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTET--IKDVYRTVSVSQQGKQYLGSARPDHQPPL 71
L G GKD N WK L L+ G+L E I ++S +GK +L A+ + P L
Sbjct: 890 LFGSGKDWPENLWKALGRSLVLEGFLKEVSGINKFSTICTLSAKGKDWLCKAKENSSPKL 949
Query: 72 LLTFNGEM-VDAEEHETISSNVGDLKSSATLENEGFSEADMQ--LYHMLLEERKKLARVT 128
LL N ++ + + T+ + S T+ E ++Q LY L+ R+KLA
Sbjct: 950 LLLMNEDLYLKTPSNATVQLPLPLAPVSPTVPAVSQREKELQTALYGKLVAARQKLANEK 1009
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSL 188
P L ++ + + RP+T + IDGV++ + LL I+ SQ NL
Sbjct: 1010 DIPPAVLATNKVLVDMTTIRPTTIESIKRIDGVSEAKSAML-ESLLIMIKEFSQTNNLQT 1068
Query: 189 DGKVGEHTAFTRKLHVVVNTRTK---LTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKE 245
D + + + + ++++ R++ LT ++ + ++ E +S++ + RS P+
Sbjct: 1069 D--IFKTSGSQDQPNIILQKRSECGTLTESERVTYTLFQEKNMSLRSVCE--SRSLPL-- 1122
Query: 246 QTVV-DYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKV 288
TVV +L +A+ + ++ R GLT E IQE I+K+
Sbjct: 1123 -TVVGTHLSQALKADYPVDLER----AGLTPE----IQEMITKI 1157
>gi|426256366|ref|XP_004021811.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase [Ovis aries]
Length = 1446
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 141/350 (40%), Gaps = 67/350 (19%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQYLGSARPDHQPPL 71
+ G GKDH+ NWWK L++QLI G+L E + + +++++G+ + A+ + L
Sbjct: 1011 VFGTGKDHTENWWKALSHQLIIEGFLAEVPGHRKYVKICTLTEKGRNWFAKAKTESPQRL 1070
Query: 72 LLTFN---------------------------------------GEMVDAEEHETISSNV 92
LL N +M + H+ ISS
Sbjct: 1071 LLQANEQLCPRTFLPSSKAVSSGTEEHVSDQVPVELTSEKQFNLDQMYSYKAHDKISSGR 1130
Query: 93 GDLKSSATLENEGF-------------SEADMQLYHMLLEERKKLARVTGTAPYALCGDQ 139
K+S + + G E LY L+ R+K A P L ++
Sbjct: 1131 NSPKNSTIVSSPGKYYKSSEPVTSTQEQETQTALYGELVAARQKHANTMDVPPAILATNK 1190
Query: 140 TIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLD-GKVGEHTAF 198
+ +A RP+T + IDGV++ + LL+ IR Q ++ D E
Sbjct: 1191 ILVDMAKIRPTTVENVKRIDGVSEGKAVMLAP-LLEVIRRFCQINSVQTDLFSSTELQEE 1249
Query: 199 TRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSE 258
RK V+ N L+P+ + + E +S++ A R+ P+ TV +L +A+
Sbjct: 1250 QRKSLVLENKANSLSPSVAVTYSFFQEKKMSLKDTAE--KRTLPL--TTVGMHLSQAMKA 1305
Query: 259 GFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK---DKLKPIKNELPDDI 305
G+ ++ R GLT EI I + I +K+ I+ +P++I
Sbjct: 1306 GYPVDTER----AGLTPEIRKVIADVIRNPPINSDTNKINLIRIYVPENI 1351
>gi|423517540|ref|ZP_17494021.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuA2-4]
gi|401163812|gb|EJQ71157.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuA2-4]
Length = 705
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 103/208 (49%), Gaps = 24/208 (11%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTK---LTPAKYEAWKMWHED 226
G H LQ ++H + + A T K VV ++ + E ++M+ +
Sbjct: 575 GSHFLQAVQHFIED---------NPNYAETIKTEVVSESKKSGKASANSHLETYEMYKQ- 624
Query: 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAIS 286
G+ + +IA + + QT+ ++L+ +G +++W + E + I+ A+
Sbjct: 625 GIDLDEIA----KERSLSRQTIENHLIRCFEDGMEVDWNSF-----VPAEYEALIETAVQ 675
Query: 287 KVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK++LP++++Y I+A L
Sbjct: 676 --NAEGGLKSIKDQLPNEVSYFMIRAYL 701
>gi|423365441|ref|ZP_17342874.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD142]
gi|401090808|gb|EJP98960.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD142]
Length = 705
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 103/208 (49%), Gaps = 24/208 (11%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTK---LTPAKYEAWKMWHED 226
G H LQ ++H + + A T K VV ++ + E ++M+ +
Sbjct: 575 GSHFLQAVQHFIED---------NPNYAETIKTEVVSESKKSGKASANSHLETYEMYKQ- 624
Query: 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAIS 286
G+ + +IA + + QT+ ++L+ +G +++W + E + I+ A+
Sbjct: 625 GIDLDEIA----KERSLSRQTIENHLIRCFEDGMEVDWNSF-----VPAEYEALIETAVQ 675
Query: 287 KVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK++LP++++Y I+A L
Sbjct: 676 --NAEGGLKSIKDQLPNEVSYFMIRAYL 701
>gi|163940564|ref|YP_001645448.1| ATP-dependent DNA helicase RecQ [Bacillus weihenstephanensis KBAB4]
gi|163862761|gb|ABY43820.1| ATP-dependent DNA helicase RecQ [Bacillus weihenstephanensis KBAB4]
Length = 705
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 103/208 (49%), Gaps = 24/208 (11%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTK---LTPAKYEAWKMWHED 226
G H LQ ++H + + A T K VV ++ + E ++M+ +
Sbjct: 575 GSHFLQAVQHFIED---------NPNYAETIKTEVVSESKKSGKASANSHLETYEMYKQ- 624
Query: 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAIS 286
G+ + +IA + + QT+ ++L+ +G +++W + E + I+ A+
Sbjct: 625 GIDLDEIA----KERSLSRQTIENHLIRCFEDGMEVDWNSF-----VPAEYEALIETAVQ 675
Query: 287 KVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK++LP++++Y I+A L
Sbjct: 676 --NAEGGLKSIKDQLPNEVSYFMIRAYL 701
>gi|423523321|ref|ZP_17499794.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuA4-10]
gi|401171563|gb|EJQ78789.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuA4-10]
Length = 705
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAK----YEAWKMWHE 225
G H LQ ++H + D T T VV+ R K A E ++M+ +
Sbjct: 575 GSHFLQAVQHFIE------DNPNYAETIKTE----VVSERKKSGKASANSHIETYEMYKQ 624
Query: 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
G+ + +IA G S QT+ ++L+ +G ++ W + E + I+ A+
Sbjct: 625 -GIDLNEIAKDRGLS----RQTIENHLIRCHEDGMEVEWQSF-----VPTEYEALIETAV 674
Query: 286 SKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LPD+++Y I+A L
Sbjct: 675 Q--NAEGGLKSIKEQLPDEVSYFMIRAYL 701
>gi|427722202|ref|YP_007069479.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7376]
gi|427353922|gb|AFY36645.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7376]
Length = 715
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 132/314 (42%), Gaps = 62/314 (19%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+KV+ + ++L +G+G+DH+ + WK L L+ G++ ET D YR + ++ + L
Sbjct: 444 EKVLQNRHNELSTYGIGRDHTKDEWKNLGRSLLHQGFMAET-SDGYRVLKLNALSWEILR 502
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE- 120
R E+ A E + T E G S + M + ML EE
Sbjct: 503 KQR-------------EVKIAVE-----------RRKTTEEILGISSSRMDV-EMLFEEL 537
Query: 121 ---RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
RK LA V APY + D T+KK+A RP T+A I GV +G+ L I
Sbjct: 538 RRLRKHLADVNWVAPYMIFSDSTLKKMAKKRPQTRADFMQISGVTIAKTQRYGEPFLNKI 597
Query: 178 RHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYP 237
+ + S KV E FT +L + LS+ +IA
Sbjct: 598 KEFC-RTQPSPKPKVSETHIFTLQL---------------------FQQNLSVPEIAKQR 635
Query: 238 GRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPI 297
+A T+ +L + + G ++ RL +T E I EAI+K+G + L I
Sbjct: 636 NLTA----GTINKHLSDLIDNGEALDLNRL-----VTPEAQQEITEAIAKIG-HESLSKI 685
Query: 298 KNELPDDITYAHIK 311
+ L + +Y I+
Sbjct: 686 RTHLNERFSYDAIR 699
>gi|113476788|ref|YP_722849.1| ATP-dependent DNA helicase RecQ [Trichodesmium erythraeum IMS101]
gi|110167836|gb|ABG52376.1| ATP-dependent DNA helicase RecQ [Trichodesmium erythraeum IMS101]
Length = 731
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 139/312 (44%), Gaps = 45/312 (14%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S+K++D + D+L +G+GKD ++ WK LA L+ G + ET D Y + ++Q + +
Sbjct: 451 SQKILDRRHDQLSTYGIGKDRATEEWKNLAKSLLHQGLMDET-ADGYSVLKLNQHSWEVM 509
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
G + E+ I K++ +L + + +L+ L
Sbjct: 510 GRK------------TKVKIAIEKKRQIE------KTTTSLAVD-----EKRLFEELRAL 546
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK++A P + D T++++A RP T I GV +G ++ I++
Sbjct: 547 RKRMADEQSIPPTTIFQDHTLQEMAKKRPQTLDEFIRISGVGNWKRDKYGKKFIEKIKNY 606
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAK-YEAWKMWHEDGLSIQKIANYPGR 239
K L + + R L VV+ LT K E +K GLSI IAN G
Sbjct: 607 CLKYGLPIKSEP------IRDLAKVVDNVPSLTQIKTLELYK----KGLSIHAIANERG- 655
Query: 240 SAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKN 299
+K +V++L E + + I+ RL + + EI +AI+ KVG +KLKPI
Sbjct: 656 ---VKASGIVNHLAELIEKEQPIDIDRLV-KPAIQKEIIAAIE----KVG-DEKLKPIYE 706
Query: 300 ELPDDITYAHIK 311
L + TY IK
Sbjct: 707 YLQERYTYDDIK 718
>gi|148703462|gb|EDL35409.1| Werner syndrome homolog (human) [Mus musculus]
Length = 1385
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 144/354 (40%), Gaps = 70/354 (19%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQQGKQYLGSARPDHQPPL 71
L G GK+ + +WWKTL++ LI+ G+L E K+ +T S++++G+++LG A P L
Sbjct: 968 LFGAGKEQAESWWKTLSHHLIAEGFLVEVPKENKYIKTCSLTKKGRKWLGEASSQSPPSL 1027
Query: 72 LLTFNGEMV--------------DAEEH-------------------------ETISSNV 92
LL N EM + +H E +SS
Sbjct: 1028 LLQANEEMFPRKVLLPSSNPVSPETTQHSSNQNPAGLTTKQSNLERTHSYKVPEKVSSGT 1087
Query: 93 GDLKSSATLENEGFSEADMQ-------------LYHMLLEERKKLARVTGTAPYALCGDQ 139
K SA + + G S + ++ LY L+E R+K A P L ++
Sbjct: 1088 NIPKKSAVMPSPGTSSSPLEPAISAQELDARTGLYARLVEARQKHANKMDVPPAILATNK 1147
Query: 140 TIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLD--GKVGEHTA 197
+ +A RP+T + IDGV++ LL I+H Q ++ D H
Sbjct: 1148 VLLDMAKMRPTTVENMKQIDGVSEGKAALLAP-LLGVIKHFCQVTSVQTDLLSSAKPHKE 1206
Query: 198 FTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVS 257
K + L + + ++ E + + IA R P+ V +L +AV
Sbjct: 1207 -QEKSQEMEKKDCSLPQSVAVTYTLFQEKKMPLHSIAE--NRLLPLT--AVGMHLAQAVK 1261
Query: 258 EGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD---KLKPIKNELPDDI-TY 307
G+ ++ R GLT E + I + I K+K I+ +P+++ TY
Sbjct: 1262 AGYPLDMER----AGLTPETWKIIMDVIRNPPINSDMYKVKLIRMLVPENLDTY 1311
>gi|428778146|ref|YP_007169933.1| ATP-dependent DNA helicase RecQ [Halothece sp. PCC 7418]
gi|428692425|gb|AFZ45719.1| ATP-dependent DNA helicase RecQ [Halothece sp. PCC 7418]
Length = 709
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 131/297 (44%), Gaps = 56/297 (18%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
+G+GKD + W+ LA L+ G+L ET D YR + ++Q+ + L R + L
Sbjct: 453 YGIGKDKTVEEWRNLARSLLHQGFLAETT-DGYRVLKLNQRSWEILRQKRTVYIAVL--- 508
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYA 134
+ S N D+++ QL L ++RK LA TAPY
Sbjct: 509 -------PSSQKRKSHNTLDIETQ-------------QLLIRLRKKRKWLADTQSTAPYM 548
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGE 194
+ DQ ++++A +P +LA+ GV +H + +G+ + IR Q+
Sbjct: 549 IFSDQALREMAQIKPKHLDQLADFSGVTEHKLHQYGEAFISEIRSFLQE----------- 597
Query: 195 HTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLE 254
++L + V ++TK+ + + G SI+ IA G ++ T+ D+L E
Sbjct: 598 -----KRLPIPVPSQTKMKTLRLA------QQGYSIEDIAETRG----MRTSTINDHLCE 642
Query: 255 AVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIK 311
+ + + E +D+ I + I++VG D LK I+ L ++ +Y IK
Sbjct: 643 LIEMNQPVKLEQFVPE---SDQ--KVIWQVINQVG-DDSLKTIREALGEEYSYEQIK 693
>gi|423396692|ref|ZP_17373893.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG2X1-1]
gi|401651268|gb|EJS68833.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG2X1-1]
Length = 705
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPRNDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSQFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ + +G +++W I +A+Q A
Sbjct: 624 Q-GIDLSEIA----KERSLSRQTIENHLIRSFEDGMEVDWQSFVP-AEYEPLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LPD+++Y I+A L
Sbjct: 678 ------EGGLKSIKEQLPDEVSYFMIRAYL 701
>gi|334338943|ref|YP_004543923.1| ATP-dependent DNA helicase RecQ [Desulfotomaculum ruminis DSM 2154]
gi|334090297|gb|AEG58637.1| ATP-dependent DNA helicase RecQ [Desulfotomaculum ruminis DSM 2154]
Length = 715
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 134/314 (42%), Gaps = 51/314 (16%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
SK+V F +L +GL K+++ L + LI+ GYL T
Sbjct: 439 SKRVKQYGFHQLSTYGLLKEYTVKQITDLIHVLIAEGYLFLT------------------ 480
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ Q P++ + E + + + +E++ L+ L
Sbjct: 481 -----ESQYPVVQLLPKAFAVLKGQEKVLQKIRQKEQVKDIEDD--------LFEKLRSL 527
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+L++ PY + D T+++++ P+ + + I GV Q +G L+ I+
Sbjct: 528 RKELSQRNKVPPYIIFPDSTLREMSQHCPADQGAMLAIKGVGQAKFQQYGQEFLKLIQQY 587
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
Q+ +SL+ + + K P+ WK+ + G S+ +IA R
Sbjct: 588 VQEKGISLEKERASSGE---------PDQEKEPPSHVITWKLL-QKGYSLPEIA----RE 633
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
+K T+ D+L+ EG+DI W L + + + I + I ++G DKLKP+K +
Sbjct: 634 RNLKPVTIQDHLIRCGLEGYDIPWDTL-----IPQKYEALILQKIEELGA-DKLKPLKEQ 687
Query: 301 LPDDITYAHIKACL 314
LPD++ Y IKA L
Sbjct: 688 LPDEVDYMAIKAVL 701
>gi|423407543|ref|ZP_17384692.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG2X1-3]
gi|401658869|gb|EJS76358.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG2X1-3]
Length = 705
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPRNDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSQFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ + +G +++W I +A+Q A
Sbjct: 624 Q-GIDLSEIA----KERSLSRQTIENHLIRSFEDGMEVDWQSFV-PAEYEPLIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LPD+++Y I+A L
Sbjct: 678 ------EGGLKSIKEQLPDEVSYFMIRAYL 701
>gi|423559544|ref|ZP_17535846.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MC67]
gi|401188048|gb|EJQ95117.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MC67]
Length = 705
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQRDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + ++ + + VV+ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEDNPNYAESIKTEVVSERKKSGKASVNSHIETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA G S QT+ ++L+ + +G ++ W + E + I+ A
Sbjct: 624 Q-GIDLNEIAKDRGLS----RQTIENHLIRSFEDGMEVEWQSF-----VPTEYEALIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LP +++Y I+A L
Sbjct: 674 VQ--NAEGGLKSIKEQLPGEVSYFMIRAYL 701
>gi|312384688|gb|EFR29358.1| hypothetical protein AND_01775 [Anopheles darlingi]
Length = 936
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 91/384 (23%), Positives = 169/384 (44%), Gaps = 69/384 (17%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--------VYRTVSVSQQGKQYLGS-AR 64
L+G+GK WWK+L L G+LT+ D +Y+ + ++ +++L S +
Sbjct: 441 LYGVGKTRDEEWWKSLGSLLEREGFLTKVKLDNTFNRFATIYK-IQLTAAARKWLNSQSE 499
Query: 65 PDHQPPLLLTFNGEM-----VDAEEHETISSNVGDLKSSATLE-------NEGFSEADM- 111
P ++ LLL +M V A E ++ + + A + + GF A +
Sbjct: 500 PPNRRQLLLKPTADMFKSFKVIAPSSERVAVSDHTISPPANRKPVLNITTSRGFLPASVA 559
Query: 112 -------QLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARP--STKARLANIDGVN 162
+L LL++R +LA PY + + + ++A RP T+ R A +DG +
Sbjct: 560 GPQNITQELVQTLLKKRSELATAFECMPYMIASNAALHQMATKRPLNMTEMRNAQLDGFS 619
Query: 163 QHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRT-----KLTPAKY 217
+ G L I+ QKLN + ++K V ++ + L+ +
Sbjct: 620 DVKLQKFGREFLICIQ---QKLN---------YLPPSQKPSVAESSDSDFPGGTLSATQQ 667
Query: 218 EAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDI---NWTRLCDEVGLT 274
++W+MW +G ++ +IA+ + E T++++L +A+ G + RL + GL
Sbjct: 668 QSWRMWRGEGKAVPEIAS----ERRLAESTIINHLQDAIRVGASFGKPDLVRLGIDDGLY 723
Query: 275 DEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKACLVMENCGISPEVIPPSQKKGN 334
I S + + + KL IK P ++T+ +K + +E + PP + K N
Sbjct: 724 ATIVSHLPPNMEQQPI--KLTTIKELCPPEVTFDQLKIVIALE------KRKPPRETKPN 775
Query: 335 ----TDELPSKASETWHAEEPHEV 354
T+ LPS S T ++P E+
Sbjct: 776 SFTSTESLPSSTS-TSETKKPPEI 798
>gi|423469086|ref|ZP_17445830.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6O-2]
gi|402440437|gb|EJV72430.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6O-2]
Length = 705
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G H LQ ++H + ++ + + V++ R K A E ++M+
Sbjct: 575 GSHFLQAVQHF-----------IEDNPNYAETIKTEVISERKKSGKASANSHIETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA G S QT+ ++L+ + +G ++ W I +A+Q A
Sbjct: 624 Q-GIDLNEIAKDRGLS----RQTIENHLIRSFEDGMEVEWQSFV-PAAYEALIETAVQNA 677
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP +++Y I+A L
Sbjct: 678 ------EGGLKSIKEQLPGEVSYFMIRAYL 701
>gi|206971887|ref|ZP_03232836.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1134]
gi|206733272|gb|EDZ50445.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1134]
Length = 705
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 102/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSRFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVDWQSF-----VPAEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NADGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|407261615|ref|XP_003946318.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Mus
musculus]
Length = 1434
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 144/354 (40%), Gaps = 70/354 (19%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQQGKQYLGSARPDHQPPL 71
L G GK+ + +WWKTL++ LI+ G+L E K+ +T S++++G+++LG A P L
Sbjct: 1035 LFGAGKEQAESWWKTLSHHLIAEGFLVEVPKENKYIKTCSLTKKGRKWLGEASSQSPPSL 1094
Query: 72 LLTFNGEMV--------------DAEEH-------------------------ETISSNV 92
LL N EM + +H E +SS
Sbjct: 1095 LLQANEEMFPRKVLLPSSNPVSPETTQHSSNQNPAGLTTKQSNLERTHSYKVPEKVSSGT 1154
Query: 93 GDLKSSATLENEGFSEADMQ-------------LYHMLLEERKKLARVTGTAPYALCGDQ 139
K SA + + G S + ++ LY L+E R+K A P L ++
Sbjct: 1155 NIPKKSAVMPSPGTSSSPLEPAISAQELDARTGLYARLVEARQKHANKMDVPPAILATNK 1214
Query: 140 TIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLD--GKVGEHTA 197
+ +A RP+T + IDGV++ LL I+H Q ++ D H
Sbjct: 1215 VLLDMAKMRPTTVENMKQIDGVSEGKAALLAP-LLGVIKHFCQVTSVQTDLLSSAKPHKE 1273
Query: 198 FTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVS 257
K + L + + ++ E + + IA R P+ V +L +AV
Sbjct: 1274 -QEKSQEMEKKDCSLPQSVAVTYTLFQEKKMPLHSIAE--NRLLPL--TAVGMHLAQAVK 1328
Query: 258 EGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD---KLKPIKNELPDDI-TY 307
G+ ++ R GLT E + I + I K+K I+ +P+++ TY
Sbjct: 1329 AGYPLDMER----AGLTPETWKIIMDVIRNPPINSDMYKVKLIRMLVPENLDTY 1378
>gi|254413079|ref|ZP_05026851.1| ATP-dependent DNA helicase RecQ [Coleofasciculus chthonoplastes PCC
7420]
gi|196180243|gb|EDX75235.1| ATP-dependent DNA helicase RecQ [Coleofasciculus chthonoplastes PCC
7420]
Length = 731
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 131/297 (44%), Gaps = 54/297 (18%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
+G+G+D S + WK LA L+ G + ET D YR + ++++ + L R H
Sbjct: 478 YGIGRDKSIDAWKMLARSLLHQGLMDET-TDGYRVLKLNKRSWEVLRKQRSVH------- 529
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYA 134
A ++ + D+ S T E E L+ L + RK++A + PY
Sbjct: 530 ------IAITQTPVAKALSDV-SPRTAEIE-------LLFERLRKLRKQIADIQSVPPYV 575
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGE 194
+ D ++K +A +P T A I GV H + +G+ + +R Q
Sbjct: 576 IFADSSLKLMARMKPKTLEEFAQISGVTAHKLTQYGERFVSEVREFCQ------------ 623
Query: 195 HTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLE 254
+KL V + + +++ + ++ GLSI++IA G AP T++ +L E
Sbjct: 624 ----GQKLPVPLPSNSQMVTLQ------LYQQGLSIEEIAEKRG-YAP---STILTHLSE 669
Query: 255 AVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIK 311
+ + I+ RL + E I +AI VG + L+ ++ EL +D +Y I+
Sbjct: 670 LIEQNQPIDLNRL-----VAAERQKPILQAIQNVGT-NSLRILREELGEDYSYGEIR 720
>gi|228991633|ref|ZP_04151574.1| ATP-dependent DNA helicase RecQ [Bacillus pseudomycoides DSM 12442]
gi|228768071|gb|EEM16693.1| ATP-dependent DNA helicase RecQ [Bacillus pseudomycoides DSM 12442]
Length = 705
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 26/210 (12%)
Query: 109 ADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVIT 168
D L+ +L E RK++A+ G P+ + DQT+K + P ++ L + G+ +H +
Sbjct: 514 GDHPLFEILREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSETELLQVKGIGEHKLAK 573
Query: 169 HGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAK----YEAWKMWH 224
+G H LQ + H ++ A T K VV R K A E ++M+
Sbjct: 574 YGSHFLQAVIHFMEQ---------NPDYAETMKTEVVTE-RKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G + IA + + QTV ++L+ EG +++W + E S I+ A
Sbjct: 624 Q-GTELITIA----KERDLSRQTVENHLIRCYEEGMEVDWPSF-----VPAEYESLIESA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + LK IK +LPD+++Y I+A L
Sbjct: 674 VQH--AEGGLKSIKEQLPDEVSYFMIRAYL 701
>gi|229179100|ref|ZP_04306457.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 172560W]
gi|228604468|gb|EEK61932.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 172560W]
Length = 705
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + + P + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQNDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSRFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVDWQSF-----VPAEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NADGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|410956163|ref|XP_003984713.1| PREDICTED: Werner syndrome ATP-dependent helicase, partial [Felis
catus]
Length = 1190
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 158/382 (41%), Gaps = 74/382 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTET--IKDVYRTVSVSQQGKQ 58
S+++ D Q+ + L G GKDH+ NWWK L+ QL++ G+LTE R +++++G+
Sbjct: 742 SQRLAD-QYRRHDLFGNGKDHTENWWKALSRQLMTEGFLTEIPGSSKFIRICTLTKKGRD 800
Query: 59 YLGSARPDHQPPLLLTFNGE---------------------------------------- 78
+L A+ + L+L N E
Sbjct: 801 WLDKAKTEFPKKLILQANEELCLTEFPQPSSKTVSLGMQQCSYTQEPTELTAEKQSNLEK 860
Query: 79 MVDAEEHETISSNVGDLKSSATLENEGFS-------------EADMQLYHMLLEERKKLA 125
M + + ISS K S + + G S + LY L+E R++ A
Sbjct: 861 MYSYKASDKISSGSNIPKRSIMVHSPGKSYKSSEPVISAEEQKTQTMLYSKLVEARQEHA 920
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
G P L ++ + +A RP+T + IDGV++ + LL+ I+H QK +
Sbjct: 921 NQKGVPPAILATNKILLDMAKIRPTTVENVKRIDGVSEGKALMLAP-LLEVIKHFCQKNS 979
Query: 186 LSLDGKVGEHTAFTRKLH---VVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAP 242
+ D + +T K V N L+ + + ++ E +S+ +IA R P
Sbjct: 980 IQTD--LFPNTKLQEKQGNSLVPKNGACSLSQSVAITYSLFQEKKMSLMRIAE--NRILP 1035
Query: 243 IKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK---DKLKPIKN 299
+ V +L +AV G ++ R GLT E+ I + I +K+K I+
Sbjct: 1036 LT--AVGMHLSQAVRAGCPLDTER----AGLTPEVQKIIADVIRNPPINSDINKIKLIRA 1089
Query: 300 ELPDDI-TYAHIKACLVMENCG 320
+P +I TY A ++E G
Sbjct: 1090 LVPKNIDTYLIHMAIEILEKDG 1111
>gi|326918448|ref|XP_003205500.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase-like [Meleagris gallopavo]
Length = 1569
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 88/374 (23%), Positives = 154/374 (41%), Gaps = 69/374 (18%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQ 58
S+++ D ++ K L+G GKD + NWWK+L+ QLI G+L E T ++Q+G+
Sbjct: 1043 SQRLPD-RYRKHPLYGSGKDWTENWWKSLSQQLIMEGFLREVSGRSKFATTCGLTQKGRN 1101
Query: 59 YLGSARPDHQPPLLLTFNGEM-VDAEEHETISSNVGDLKSSATLENEGFSEA-DMQLYHM 116
+L A P LLL + ++ + + +S V ++ S ++ S M LY M
Sbjct: 1102 WLLKAESASNPSLLLQSSEDLNLQRTPRSSRTSPVVSMQRSPDMKGTKQSPVKQMSLYEM 1161
Query: 117 ---------------------------------------------------LLEERKKLA 125
LL R+K+A
Sbjct: 1162 FAYERKAGTLPKSNTVVNSPTECSPVKSPLRSRVSVVSSQENKLETALYGKLLTARQKVA 1221
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
P L ++ + ++A RP+T + IDGV++ G LL I+ Q
Sbjct: 1222 NEKVIPPAVLATNKILVEMARTRPTTVENVKRIDGVSEAKSTMLG-LLLAEIKDFCQANG 1280
Query: 186 LSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKE 245
L D + ++ NT+ L+P+++ + ++ E LS++ I+ RS P+ E
Sbjct: 1281 LQTDIFPKPESTDKKETSPWKNTKA-LSPSEHVTYVLFQEKNLSLRTISET--RSLPLTE 1337
Query: 246 QTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD---KLKPIKNELP 302
V +L +AV G+ +N R GLT E+ I + I K++ I+ +P
Sbjct: 1338 --VGTHLFQAVKAGYPVNLER----AGLTPEVQQIISDIIRNPPIDSDTTKIQAIRKLVP 1391
Query: 303 DDITYAHIKACLVM 316
+I I+ + +
Sbjct: 1392 ANIELYLIQMAIAL 1405
>gi|254425231|ref|ZP_05038949.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 7335]
gi|196192720|gb|EDX87684.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 7335]
Length = 738
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 140/313 (44%), Gaps = 38/313 (12%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
K++ + D+L + +GK+ +++ W+ L +I GYL ET D Y + ++++ Q L
Sbjct: 448 KRIFELGHDRLTTYSIGKERTADEWRMLCRAMIYQGYLEET-TDGYPILRLTRKSNQILK 506
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGD-LKSSATLENEGFSEADMQLYHMLLEE 120
P ++ + + S + + +E + L L
Sbjct: 507 KFVSVKIP------------------VTQKIAQPIASKEKVTSTELNEESVSLMRQLKTL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA PY + D +++++A RP T + I GV +I +G Q IR
Sbjct: 549 RKELADQQNVPPYVVFSDSSLRQMAQLRPQTADDFSKISGVGSRKLIQYGKIFTQAIRKF 608
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVV--VNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPG 238
NL + + +F+++ VV ++++ ++ + ++ ++GLS I+
Sbjct: 609 CSDHNLEVSTE-----SFSKEPTVVDKGSSKSDISSTHLKTLDLY-QNGLSPSDIS---- 658
Query: 239 RSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIK 298
+ I+ TV ++ E +S G+ I+ +L D E + I++AI+KVG L+ I+
Sbjct: 659 LTRNIRLSTVNGHIAELISAGYPIDINKLVDR-----ERQTVIKQAIAKVG-PHSLRNIR 712
Query: 299 NELPDDITYAHIK 311
E + Y IK
Sbjct: 713 EETGETYDYQEIK 725
>gi|423413420|ref|ZP_17390540.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG3O-2]
gi|423430795|ref|ZP_17407799.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG4O-1]
gi|401101518|gb|EJQ09507.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG3O-2]
gi|401118872|gb|EJQ26700.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG4O-1]
Length = 705
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 101/210 (48%), Gaps = 28/210 (13%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ L E RK++A+ G P+ + DQT+K + + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEALREVRKEIAQGEGVPPFVIFSDQTLKDMCVKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHV-VVNTRTKLTPAK----YEAWKMWH 224
G LQ ++H + E+ + + VV+ R K A E ++M+
Sbjct: 575 GSRFLQAVQHF-----------IEENPNYAETIKTEVVSERKKSGKASANSHLETYEMYK 623
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
+ G+ + +IA + + QT+ ++L+ +G +++W + E S I+ A
Sbjct: 624 Q-GIDLNEIA----KERNLSRQTIENHLIRCYEDGMEVDWQSF-----VPAEYESLIETA 673
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 674 VQ--NADGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|433461248|ref|ZP_20418861.1| ATP-dependent DNA helicase RecQ [Halobacillus sp. BAB-2008]
gi|432190413|gb|ELK47446.1| ATP-dependent DNA helicase RecQ [Halobacillus sp. BAB-2008]
Length = 711
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 131/326 (40%), Gaps = 69/326 (21%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+KV +FD L +G+ +++ + L + GYL Y G
Sbjct: 438 QKVKQFRFDSLSTYGIMSNYTEKELTRFIHFLTAEGYL-------------------YPG 478
Query: 62 SARPDHQPPLLLTFNGE-MVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S R P L LT + ++ EE + K+ A E F E L
Sbjct: 479 SGR---YPTLQLTQEAKKVIKGEEPVIMLVEAVVTKTKADYNVEYFEE--------LRRL 527
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI--- 177
RK++A PY + D T+K + P TK + I G+ + +G+ L+ I
Sbjct: 528 RKQIAEQESLPPYVIFSDATLKDLTAYLPETKDNMLKIKGIGEQKYQKYGEAFLEMIQPW 587
Query: 178 --------RHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLS 229
R S + L G+ R H++ YE WK+ + +
Sbjct: 588 AKAAADKPRPASSSPSAPLKRDPGDD----RPSHII----------SYEMWKLGEQ---T 630
Query: 230 IQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVG 289
++IA G S + T+ +L A EG+DINW DE T ++ EA ++
Sbjct: 631 PKEIAEARGMS----QLTIESHLFRAAKEGYDINWPSWFDEQQET-----SVLEAYEQLE 681
Query: 290 CKDKLKPIKNELPDDITYAHIKACLV 315
K KLKP+K+ LPD +Y+ IKA LV
Sbjct: 682 DK-KLKPLKDMLPDTYSYSAIKAVLV 706
>gi|452992935|emb|CCQ95594.1| putative ATP-dependent DNA helicase recQ [Clostridium ultunense
Esp]
Length = 722
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 143/316 (45%), Gaps = 39/316 (12%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL- 60
K++++ D L +G+ K+++ K + L++ Y+ T D Y + ++ L
Sbjct: 439 KRILELGLDNLSTYGIMKEYTEPALKEIIMTLVAMDYIHMT-ADKYPVLKLTSASIPVLK 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSE-ADMQLYHMLLE 119
G + H+ LL E + I+ TL+ E E D +L+ L E
Sbjct: 498 GDVKVYHKKELL-----------ESKQITR-------KRTLDLEYIDENYDTKLFAELRE 539
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
R +LA+ G AP+ + D T+K++A P K I G+ +G+ + IR
Sbjct: 540 LRYRLAQQKGVAPFIIFHDSTLKEMATYFPKDKEEFLRIKGIGLKKYENYGEDFINIIRD 599
Query: 180 LSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGR 239
+ N+ + +++ + + + + + +YE + +GLS+++IA
Sbjct: 600 YLDRNNMDISN--------IKRVEIEKSLKVE-SIDRYEETYNCYLEGLSLEEIAKIRNF 650
Query: 240 SAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKN 299
+ T++ +L G ++W+R D+ ++I +AI +VG ++L+PIK
Sbjct: 651 TP----NTIIKHLERCEKRGKTVDWSRFIDDPAKEEKIL----KAIDQVGL-ERLRPIKE 701
Query: 300 ELPDDITYAHIKACLV 315
LP++I+Y I+ ++
Sbjct: 702 ILPEEISYEDIRIIII 717
>gi|332800411|ref|YP_004461910.1| ATP-dependent DNA helicase RecQ [Tepidanaerobacter acetatoxydans
Re1]
gi|438003800|ref|YP_007273543.1| ATP-dependent DNA helicase RecQ [Tepidanaerobacter acetatoxydans
Re1]
gi|332698146|gb|AEE92603.1| ATP-dependent DNA helicase RecQ [Tepidanaerobacter acetatoxydans
Re1]
gi|432180594|emb|CCP27567.1| ATP-dependent DNA helicase RecQ [Tepidanaerobacter acetatoxydans
Re1]
Length = 729
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 140/318 (44%), Gaps = 34/318 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
SK+V++ DK+ + + +++SS+ K + L+S GY+ T D + + ++ + L
Sbjct: 438 SKRVIEYGLDKISTYKIMQEYSSDAIKEMIMALVSNGYIHMT-ADKFPILKLTDISWEIL 496
Query: 61 -GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
G + H+ LL N E I++N D +L+ L
Sbjct: 497 HGKTKFFHKKDLLQKANLSKEKRLFAERINNNF-----------------DKELFKRLKN 539
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
R+ +A+ Y + D +++++A P + I GV Q ++G+ + I
Sbjct: 540 LRQTIAQEKNLPTYIIFHDSSLREMAAFMPRNREEFFKIKGVGQKKYESYGEEFVCLINE 599
Query: 180 LSQKLNLS---LDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANY 236
Q L L ++ +T + TK +YE + GLS+++IA
Sbjct: 600 YIQTEGLDVNELRRQIANNTMIDSLPGELQEDNTK--TGRYELTYNCYLKGLSLKEIA-- 655
Query: 237 PGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKP 296
+ + E T++++L EG ++W+R D E I AI KVG +KLKP
Sbjct: 656 --QQRNLTENTIINHLERCQQEGKIVDWSRFID-----SEKEKQILNAIEKVGA-EKLKP 707
Query: 297 IKNELPDDITYAHIKACL 314
IK LP++I+Y+ I+ +
Sbjct: 708 IKEALPEEISYSDIRLVI 725
>gi|158320015|ref|YP_001512522.1| ATP-dependent DNA helicase RecQ [Alkaliphilus oremlandii OhILAs]
gi|158140214|gb|ABW18526.1| ATP-dependent DNA helicase RecQ [Alkaliphilus oremlandii OhILAs]
Length = 745
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 133/289 (46%), Gaps = 19/289 (6%)
Query: 31 YQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTFNGEMV-DAEEHETIS 89
++L +YG + + KD R + + Y+ +R D P L ++ +G MV ++ TI
Sbjct: 447 HKLSTYGIMKDCSKDFLREIISYMIAEGYIHVSR-DQYPVLSISPDGAMVLKGKQQVTIR 505
Query: 90 SNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARP 149
+ + + A N +E + L+ L RK +A P+ + D T+K++ + P
Sbjct: 506 KVLSEKRKFAETTN-THTEYNRNLFEELRALRKGIADQLRLPPFVVFSDATLKEMCVQFP 564
Query: 150 STKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSL----DGKVGEHTAFTRKLHVV 205
TK I GV + + + I++ +K NL+L K + T R
Sbjct: 565 QTKVEFLQIKGVGEVKAEKYSAPFAEAIQNYVEKNNLNLQELKSEKTDQDTEIDRSDKEN 624
Query: 206 VNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWT 265
V + K P + +++M+ E G SI +IA ++ +KE TV ++ G++IN+
Sbjct: 625 VEKQPK-EPTREISYRMYRE-GKSIPEIA----KARELKETTVESHIENCARLGYEINYR 678
Query: 266 RLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+++EI + I K KLK +K+ LPD+ITY I+ L
Sbjct: 679 DF-----ISEEIEALIIHTYRKKRGA-KLKEMKDSLPDEITYTEIRFAL 721
>gi|428771662|ref|YP_007163452.1| ATP-dependent DNA helicase RecQ [Cyanobacterium aponinum PCC 10605]
gi|428685941|gb|AFZ55408.1| ATP-dependent DNA helicase RecQ [Cyanobacterium aponinum PCC 10605]
Length = 707
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 132/297 (44%), Gaps = 54/297 (18%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
+G+GKDH++ W+ L L+ G ++++ D Y+ + ++ + + L H+ + +
Sbjct: 453 YGIGKDHTTKEWQYLGRSLVYQGLVSQS-NDGYKILKLNNESWKIL-----QHKRKVKIA 506
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYA 134
N E ++N DL + LE E L L + RKKLA APY
Sbjct: 507 LNNEQ---------NNNSQDLDNPRKLETE-------ILLSRLKKLRKKLADEENIAPYV 550
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGE 194
+ GD T+K +A +P + L+ I GV ++ + +G++ L+ I
Sbjct: 551 IFGDSTLKVMAQLQPISLESLSKISGVTEYKLNKYGNYFLREI----------------- 593
Query: 195 HTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLE 254
AF + V+ T L + +++ GL++ +IA G + E T++ + E
Sbjct: 594 -IAFNHEQPVI----TPLPSHTHMKTLQFYQQGLTVSEIAKKRG----LTESTIISHFCE 644
Query: 255 AVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIK 311
+ +N + E I EA++K+G K LKPI++ L + +Y IK
Sbjct: 645 LIELNQPVNVNEFVN-----PEKQKNISEALNKIGDKF-LKPIRDYLGSEYSYDEIK 695
>gi|410611552|ref|ZP_11322650.1| ATP-dependent DNA helicase RecQ [Glaciecola psychrophila 170]
gi|410168970|dbj|GAC36539.1| ATP-dependent DNA helicase RecQ [Glaciecola psychrophila 170]
Length = 728
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 142/311 (45%), Gaps = 40/311 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV+ Q + L + +G +++ W TLA QLI G L + ++ + + ++Q+ L
Sbjct: 438 AEKVLQNQHNLLSTYNIGNEYNKKQWMTLARQLIQKGLLNQ--EEQFGGLKLTQKAGDVL 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P + V A H +S TL N G D QL +L +
Sbjct: 496 KGKVP------FFALLQQPVAASSH-----------TSKTLVNPG----DQQLVAILKAD 534
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA PYA+ D+T+ ++A P ++ L I GV Q + +G+H L I
Sbjct: 535 RKRLADAANLPPYAIFSDRTLNEMAHFFPHSQESLLRIHGVGQAKLDKYGEHYLALISDY 594
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKM--WHEDGLSIQKIANYPG 238
Q+ N+ E A T+ +++ T + + ++ +E G SI +A
Sbjct: 595 CQQHNI-------EEVANTQTASKATVSKSTSTNSSSRSAEIVSAYEAGQSIVSLA---- 643
Query: 239 RSAPIKEQTVVDYLLEAVSEGFDINW-TRLCDEVGLT-DEIFSAIQEAISKVGCKDKLKP 296
+K+ T++++L V +G + T L D+ GL+ D+I SA+ A ++LKP
Sbjct: 644 EQFKVKDGTIINHLYRYVQDGHEFKQPTLLLDQSGLSQDQIDSAL--AAFAEYSHERLKP 701
Query: 297 IKNELPDDITY 307
+ + L + TY
Sbjct: 702 VYDALNEQATY 712
>gi|440780974|ref|ZP_20959445.1| ATP-dependent DNA helicase [Clostridium pasteurianum DSM 525]
gi|440221562|gb|ELP60767.1| ATP-dependent DNA helicase [Clostridium pasteurianum DSM 525]
Length = 722
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 142/317 (44%), Gaps = 48/317 (15%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
KK++ +F++L +GL K++S LIS+G++
Sbjct: 440 KKILQYRFNELSTYGLMKNYSKKNLAEFINTLISHGFI---------------------- 477
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
+ + P ++L+ N M + HE + ++E + SE D +L+ +L R
Sbjct: 478 NLKEGEYPTVVLS-NKSMDVLKGHEKVVF-------KESIEAKKISE-DNELFEILRNLR 528
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
K++A G PY + D T+K+++L P K + +I GV Q +G+ L I
Sbjct: 529 KEIAVKEGIPPYYIFSDNTLKEMSLRYPLDKDHILDISGVGQVKYEKYGETFLNIINEYV 588
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKM---WHEDGLSIQKIANYPG 238
K N+ ++ +T K+ ++ TK K + ++ + G SI+ IA+
Sbjct: 589 NKNNIEVN--------WTEKIENKISHATKAVNKKEKTHEITIDMIKSGNSIKDIASQRN 640
Query: 239 RSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIK 298
+ + Y E +E +IN+ + T+E +I A+ K+G ++L PIK
Sbjct: 641 LTIGTILTHIDKYFREGNAEKLNINFDGI-----FTEEQEKSIISAVDKLGV-ERLAPIK 694
Query: 299 NELPDDITYAHIKACLV 315
E+ D+I+Y IKA ++
Sbjct: 695 AEVSDEISYDAIKAVIL 711
>gi|423593267|ref|ZP_17569298.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD048]
gi|401226933|gb|EJR33463.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD048]
Length = 705
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 103/208 (49%), Gaps = 24/208 (11%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L E RK++A+ G P+ + DQT+K + P + + L + G+ +H ++ +
Sbjct: 515 DHPLFEVLREVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTK---LTPAKYEAWKMWHED 226
G + LQ +++ + + A T K VV ++ + E ++M+ +
Sbjct: 575 GSYFLQAVQYFIED---------NPNYAETIKTEVVSESKKSGKASANSHLETYEMYKQ- 624
Query: 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAIS 286
G+ + +IA + + QT+ ++L+ +G +++W + E + I+ A+
Sbjct: 625 GIDLDEIA----KERSLSRQTIENHLIRCFEDGMEVDWNSF-----VPTEYEALIETAVQ 675
Query: 287 KVGCKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK++LP++++Y I+A L
Sbjct: 676 --NAEGGLKSIKDQLPNEVSYFMIRAYL 701
>gi|427416527|ref|ZP_18906710.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7375]
gi|425759240|gb|EKV00093.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7375]
Length = 736
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 136/310 (43%), Gaps = 34/310 (10%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
K++++ D+L +G+G+DHS + W+ L L+ L ET D Y + ++ Q L
Sbjct: 449 KRLMELGHDQLSTYGIGQDHSVDDWRQLCRSLLHQELLAET-TDGYSVLKLNSGSWQVLK 507
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
P + + + E A T +S+ L + TL L L R
Sbjct: 508 KEIPVN---IHVFQRAESTKA----TKASDEVQLNADETL-----------LLEQLRSLR 549
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
K+LA PY + D +++++A RP T A I GV + + +G I+H
Sbjct: 550 KRLADEQSVPPYIVFADASLRQMAQQRPITTEAFATISGVGRRKLEQYGQVFTNEIQHFC 609
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
Q NL+ + + A T + +LT + Y H+ GLS +IA G
Sbjct: 610 QSHNLTPNNNITSSPATTE----TRRSSNELT-STYIITHQLHQQGLSPSEIALERG--- 661
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNEL 301
++ T++++L + + G D++ L ++ E I EAI KVG L+ I++EL
Sbjct: 662 -LRLGTIIEHLNQLIEMGQDVDLNAL-----VSPERQVPIFEAIEKVGSH-SLRTIRDEL 714
Query: 302 PDDITYAHIK 311
+ Y I+
Sbjct: 715 GETFDYNEIR 724
>gi|89098913|ref|ZP_01171793.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911]
gi|89086317|gb|EAR65438.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911]
Length = 719
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 145/324 (44%), Gaps = 48/324 (14%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+K++ D +F++L +GL ++ + + L++ G+L+ T GK
Sbjct: 441 NKRIRDMKFNELSTYGLMRNRAEKEIAAVINYLLAEGFLSLT------------DGKY-- 486
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P ++LT + V + ETI ++ + +E + +E D L+ L
Sbjct: 487 --------PVIMLTSRVQGV-LKGQETIM-----MRKTKAIEQKPEAEGDHDLFERLRAL 532
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK++A PY + D T+++++ P+ + I GV Q +G + I+
Sbjct: 533 RKQVAEQGKIPPYVVFPDSTLREMSKYYPADGESMLQIKGVGQMKYDKYGSMFAEEIKLY 592
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKL--TPAKYEAWKMWHEDGLSIQKIANYPG 238
Q+ N+ +A K + R K+ P+ ++K + E G+ I++IA G
Sbjct: 593 MQENNIE------PPSALPPKEEKQAD-RLKVDEEPSYMVSYKHYME-GMGIKEIAKQRG 644
Query: 239 RSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIK 298
S TV +++L AV+EG NW+ L DE +I SA E+ KLKPIK
Sbjct: 645 FSLV----TVQNHVLRAVTEGNPFNWSELFDE-ETEQKIMSAAVES-----GDTKLKPIK 694
Query: 299 NELPDDITYAHIKACLVMENCGIS 322
L D+I Y IKA L+ ++
Sbjct: 695 ELLGDEIDYFTIKAVLIKNEAAVT 718
>gi|363733349|ref|XP_001235033.2| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase homolog [Gallus gallus]
Length = 1498
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/371 (23%), Positives = 148/371 (39%), Gaps = 76/371 (20%)
Query: 8 QFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQYLGSARP 65
++ K L+G GKD + NWWK+L+ QLI G+L E T ++Q+G+ +L A
Sbjct: 978 RYRKHPLYGSGKDWTENWWKSLSQQLIMEGFLREVSGRSKFATTCGLTQKGRNWLLKAGS 1037
Query: 66 DHQPPLLLTFNGEM-VDAEEHETISSNVGDLKSSATLENEGFSEA-DMQLYHM------- 116
P LLL N ++ + SS ++ S ++ S M LY M
Sbjct: 1038 ASNPSLLLQSNEDLNLQRTPRSNRSSPAVSVQRSPDMKGSKQSPVKQMSLYEMFAHEKKA 1097
Query: 117 --------------------------------------------LLEERKKLARVTGTAP 132
LL R+K+A P
Sbjct: 1098 GTLPRSNTMFNSPPERSPVKSPLRPRVPVVSSRENELETALYGKLLTARQKVANEKVIPP 1157
Query: 133 YALCGDQTIKKIALARPSTKARLANIDGVNQ----HLVITHGDHLLQTIRHLSQKLNLSL 188
L ++ + ++A RP+T + IDGV++ LV+ LL I+ Q L
Sbjct: 1158 AVLATNKILVEMARMRPTTVENVKRIDGVSEAKATMLVL-----LLAEIKEFCQANGLQT 1212
Query: 189 DGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTV 248
D + ++ NT+ L+P+++ + ++ E LS++ I+ RS P+ E V
Sbjct: 1213 DIFPKPESTDQKETSPWKNTKA-LSPSEHVTYVLFQEKNLSLRTISET--RSLPLTE--V 1267
Query: 249 VDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD---KLKPIKNELPDDI 305
+L AV G+ +N R GLT E+ I + I K++ I+ +P I
Sbjct: 1268 GTHLFRAVKAGYPVNLER----AGLTPEVQQIISDIIRNPPIDSDTTKIQAIRKLVPAHI 1323
Query: 306 TYAHIKACLVM 316
I+ +V+
Sbjct: 1324 ELYLIQMAIVL 1334
>gi|428781470|ref|YP_007173256.1| ATP-dependent DNA helicase RecQ [Dactylococcopsis salina PCC 8305]
gi|428695749|gb|AFZ51899.1| ATP-dependent DNA helicase RecQ [Dactylococcopsis salina PCC 8305]
Length = 713
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 133/297 (44%), Gaps = 55/297 (18%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
+G+GK+ ++ W+ LA L+ +TET D YR + ++Q+ + L R T
Sbjct: 455 YGIGKEKTTEEWRNLARSLLHQNLITETT-DGYRVLKLNQRSWEILRHKR---------T 504
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYA 134
+V + +++SS D+++ QL L ++RK LA + TAPY
Sbjct: 505 VYIAVVKSASEKSVSSANLDIETQ-------------QLLVRLRKKRKGLADMQNTAPYM 551
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGE 194
+ DQT+K++A +P+ ++ NI GV +H + +G + I+ LN
Sbjct: 552 IFSDQTLKEMARLKPTQINKMTNISGVTEHKLNEYGQSFVSEIQAF---LN--------- 599
Query: 195 HTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLE 254
++L + V ++TK+ + + G I++IA G +K T+ ++L E
Sbjct: 600 ----EKRLPIPVPSQTKMKTL------LLAQQGYGIEEIAETRG----MKSSTISEHLSE 645
Query: 255 AVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIK 311
+ I + ++ E AI E IS VG LK I+ L + Y IK
Sbjct: 646 LIEMNQAIKLEQF-----VSKEDQEAIWEVISIVG-DQSLKTIRETLGESYDYEPIK 696
>gi|90424478|ref|YP_532848.1| ATP-dependent DNA helicase RecQ [Rhodopseudomonas palustris BisB18]
gi|90106492|gb|ABD88529.1| ATP-dependent DNA helicase RecQ [Rhodopseudomonas palustris BisB18]
Length = 600
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 89/175 (50%), Gaps = 17/175 (9%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
++ + D++ G+GK+H S W+ + QLI+ + + + +S+S+ G+++L
Sbjct: 438 RIAQSGHDRISTFGIGKEHDSRTWRAILRQLIALRLIAVDLTG-HGGLSISEAGRRFL-- 494
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
+P L+L V A+ T + V S+A EAD L+ L E+R
Sbjct: 495 ---REKPVLMLR-----VPAKPRATQAKGVRAQASTA------LPEADRTLFQALREKRT 540
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+LAR+ PY + D+T+ ++A ARP +++++A + GV + + +G L I
Sbjct: 541 ELARMQNVPPYVIFHDKTLIEMAAARPGSRSQMAKVPGVGEAKLDRYGAAFLAVI 595
>gi|404449892|ref|ZP_11014879.1| ATP-dependent DNA helicase RecQ [Indibacter alkaliphilus LW1]
gi|403764371|gb|EJZ25272.1| ATP-dependent DNA helicase RecQ [Indibacter alkaliphilus LW1]
Length = 726
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 24/195 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL + GLGKD WKT+ Q + G+L + I++ Y + + +G +YL S P
Sbjct: 447 DKLSVFGLGKDEDERTWKTVIRQAMIGGFLEKDIEN-YGVIKTTAKGLEYLKS------P 499
Query: 70 PLLLTFNG----EMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLA 125
F EM++ E + + + G D +L+ +L ERKK+A
Sbjct: 500 YSFFIFKDHNFEEMIENETPDEVPAGGG-------------KAYDEKLFELLKAERKKVA 546
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
+ G PY + D +++++A P+++ LA I+GV V G L+ I + ++
Sbjct: 547 KAKGLPPYVIFQDPSLEEMATVYPTSREELAQINGVGMGKVTKFGTPFLKLIENYVEENE 606
Query: 186 LSLDGKVGEHTAFTR 200
+ V TA +R
Sbjct: 607 IITASDVVVKTAGSR 621
>gi|290490726|dbj|BAI79323.1| WRN helicase [Gallus gallus]
Length = 1498
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 148/371 (39%), Gaps = 76/371 (20%)
Query: 8 QFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQYLGSARP 65
++ K L+G GKD + NWWK+L+ QLI G+L E T ++Q+G+ +L A
Sbjct: 978 RYRKHPLYGSGKDWTENWWKSLSQQLIMEGFLREVSGRSKFATTCGLTQKGRNWLLKAGS 1037
Query: 66 DHQPPLLLTFNGEM-VDAEEHETISSNVGDLKSSATLENEGFSEA-DMQLYHM------- 116
P LLL N ++ + + SS ++ S ++ S M LY M
Sbjct: 1038 ASNPSLLLQSNEDLNLQRTPRSSRSSPAVSVQRSPDMKGSKQSPVKQMSLYEMFAHEKKA 1097
Query: 117 --------------------------------------------LLEERKKLARVTGTAP 132
LL R+K+A P
Sbjct: 1098 GTLPRSNTMFNSPPERSPVKSPLRPRVPVVSSRENELETALYGKLLTARQKVANEKVIPP 1157
Query: 133 YALCGDQTIKKIALARPSTKARLANIDGVNQ----HLVITHGDHLLQTIRHLSQKLNLSL 188
L ++ + ++A RP+T + IDGV++ LV+ LL I+ Q L
Sbjct: 1158 AVLATNKILVEMARMRPTTVENVKRIDGVSEAEATMLVL-----LLAEIKEFCQANGLQT 1212
Query: 189 DGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTV 248
D + ++ NT+ L+P+++ + ++ E LS++ I+ RS P+ E V
Sbjct: 1213 DIFPKPESTDQKETSPWKNTKA-LSPSEHVTYVLFQEKNLSLRTISET--RSLPLTE--V 1267
Query: 249 VDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD---KLKPIKNELPDDI 305
+L V G+ +N R GLT E+ I + I K++ I+ +P I
Sbjct: 1268 GTHLFRVVKAGYPVNLER----AGLTPEVQQIISDIIRNPPIDSDTTKIQAIRKLVPAHI 1323
Query: 306 TYAHIKACLVM 316
I+ +V+
Sbjct: 1324 ELYLIQMAIVL 1334
>gi|149179859|ref|ZP_01858364.1| ATP-dependent DNA helicase recQ [Bacillus sp. SG-1]
gi|148852051|gb|EDL66196.1| ATP-dependent DNA helicase recQ [Bacillus sp. SG-1]
Length = 707
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 126/319 (39%), Gaps = 63/319 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+ + F+KL +GL K LIS Y+ + + + VS++GK L
Sbjct: 439 NKKIREFGFEKLSTYGLMKAQKQKDISLFIDFLISEEYIN-VVSGTFPILKVSERGKNVL 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
E V +E +K+ E D +L+ +L
Sbjct: 498 QGK--------------EKVTRKE---------TMKAGKVTHQE-----DDELFQVLRAI 529
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK LA G P+ + D+T++ + P+ A + GV H +G + I
Sbjct: 530 RKDLADSEGVPPFVIFSDETLRDMCRRLPTDSASFLEVKGVGSHKNDKYGSRFNEAIAEY 589
Query: 181 SQKLNLSLD-----GKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIAN 235
D GK GE +F + M+ E G+ + KI
Sbjct: 590 KADDMKDEDPSPTKGKNGEEPSFIT------------------TYNMFKE-GMDLVKITE 630
Query: 236 YPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLK 295
S TV +++L+++ E ++N LT+E IQ+AI K G DKLK
Sbjct: 631 ERNLSLT----TVQNHILQSIEEEMEVNTDNF-----LTEEERKMIQQAIEKAG-PDKLK 680
Query: 296 PIKNELPDDITYAHIKACL 314
PIK ELPD+I+Y IK +
Sbjct: 681 PIKEELPDEISYFQIKIFM 699
>gi|443322394|ref|ZP_21051417.1| ATP-dependent DNA helicase RecQ [Gloeocapsa sp. PCC 73106]
gi|442787869|gb|ELR97579.1| ATP-dependent DNA helicase RecQ [Gloeocapsa sp. PCC 73106]
Length = 701
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 131/297 (44%), Gaps = 58/297 (19%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
+G+GKD SS WK L L+ G + T D Y + +++ + L ++R ++
Sbjct: 453 YGIGKDISSEAWKRLGRSLLDQGLVNAT-NDDYAILKLNKLSWEILRNSRR-------VS 504
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYA 134
AE+ +T D++S L+ L + R+KLA G PY+
Sbjct: 505 VAVATPKAEKQQT-----KDIESEF-------------LWLQLRQLRQKLADRLGIPPYS 546
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGE 194
+ D T+K ++ +P+TKA+L I G+NQ + +GD L+ I+
Sbjct: 547 IISDSTLKVLSQRQPTTKAQLGQISGLNQSKIAQYGDLFLEEIK---------------- 590
Query: 195 HTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLE 254
AF H+ + A E H+ GLS++ IA R + T+ +L E
Sbjct: 591 --AFLASTHLPEQLPSPTQIATLE----LHQQGLSVKAIA----RERNLTTSTIYRHLAE 640
Query: 255 AVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIK 311
+S +N D + L + +AI+ A+ K G + L P+K L +D TY+ I+
Sbjct: 641 LISLNRPVN----LDSLVLPSKQ-AAIKAALLKWGATN-LTPVKAYLGEDYTYSEIQ 691
>gi|298251484|ref|ZP_06975287.1| ATP-dependent DNA helicase RecQ [Ktedonobacter racemifer DSM 44963]
gi|297546076|gb|EFH79944.1| ATP-dependent DNA helicase RecQ [Ktedonobacter racemifer DSM 44963]
Length = 739
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 138/311 (44%), Gaps = 31/311 (9%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+ D D+L +G+GKD S++ W L L+ ++ET +D Y + +++ + L
Sbjct: 441 TKKIRDMGHDQLTTYGIGKDLSADEWTRLGRALLQQELISET-QDGYPVLKLNRLSAEIL 499
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R P + +E+ + N ++ L+ E + LYH L E
Sbjct: 500 RRQRIVEIPA---------IASEQRQNSKRNAPQVE----LKPEEWG-----LYHHLREL 541
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA APY + D +++ +A RP T+ + A I GV + I
Sbjct: 542 RKRLADEYNIAPYIIFSDNSLQVMAQQRPQTQKQFAAIPGVGDRKLEAFFSPFTHAIEDY 601
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
+ N+ + + E T++ +V R+ + Y A ++ G SI++IA G
Sbjct: 602 CDQHNMEVGLESAEEPKTTKEETPLVRKRS--SQESYRASLELYQQGYSIEEIAQQRG-- 657
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
T++++L + G +++ + L + G ++I + Q+ +V LKP K
Sbjct: 658 --FVPSTIINHLSALIEAGEEVDVSPLI-QAGHYEDIANVYQQVGMEV-----LKPAKEL 709
Query: 301 LPDDITYAHIK 311
L D +Y ++
Sbjct: 710 LGDAYSYEELR 720
>gi|410029263|ref|ZP_11279099.1| ATP-dependent DNA helicase RecQ [Marinilabilia sp. AK2]
Length = 726
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 97/191 (50%), Gaps = 16/191 (8%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D+L + G GK+ W+T+ Q + G+L + I++ Y + ++++G++Y +Q
Sbjct: 447 DQLEVFGKGKEDDERLWRTVIRQAMIGGFLEKDIEN-YGVIKITEKGEKY-------YQD 498
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
P +TF + + E++ N ++ AT G D +L+ +L ERKK+A+ G
Sbjct: 499 PYTVTFCKD----HDFESMLENEAPEEAPAT----GGKAYDEKLFELLKAERKKVAKAKG 550
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLD 189
PY + D +++++A P+++ LA I+GV V G L+ I + ++ ++
Sbjct: 551 LPPYVIFQDPSLEEMATVYPTSREELAQINGVGMGKVAKFGAPFLKLIENYVEENDIITA 610
Query: 190 GKVGEHTAFTR 200
V T+ TR
Sbjct: 611 SDVVVKTSGTR 621
>gi|334330890|ref|XP_001372295.2| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase [Monodelphis domestica]
Length = 1391
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 96/376 (25%), Positives = 147/376 (39%), Gaps = 73/376 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTET--IKDVYRTVSVSQQGKQ 58
S+++ D +F + L G GKDH +WWK LA QLI G+L E + +S++G+
Sbjct: 1026 SQRLPD-KFRRHCLFGGGKDHLESWWKALARQLILEGFLEEMPGYNKFAKFCVLSEKGRN 1084
Query: 59 YLGSARPDHQPPLLLTFNGEM-----VDAEEHETISSNV--------------------- 92
+L A + LLL N ++ ++ SSN
Sbjct: 1085 WLDQATDESARTLLLHANEDLCPRKLLNLSXKVVFSSNFVIYVFSAICIYLNQENLQKMY 1144
Query: 93 --------------------------GDLKSSATLENEGFSEADMQLYHMLLEERKKLAR 126
L S A++ ++ E LY L+EER+K A
Sbjct: 1145 SYKLTDKIYSGNNSSNKRYMVMKPLPAPLNSPASVSSKE-QELQTMLYCKLVEERQKQAS 1203
Query: 127 VTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNL 186
P L ++ + +A RPST L NIDGV++ T LL+ I SQ NL
Sbjct: 1204 EKDIPPALLATNKVLVDMAKMRPSTLESLKNIDGVSEA-KCTMLSPLLEVICKFSQMNNL 1262
Query: 187 SLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQ 246
D K + ++L + + ++ E LS++ IA R+ P+
Sbjct: 1263 LTDLFSSPSPGLEEKKRCL----SQLPASVSITYSLFQEKNLSLRSIAE--SRTMPLP-- 1314
Query: 247 TVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDIT 306
V +L +AV G+ ++ R GLT I I + I K +P LP I
Sbjct: 1315 VVGTHLSQAVKAGYPVDLER----AGLTPHIQKIITDVIQKPPISSGEQPSLGCLPVTIG 1370
Query: 307 Y--AHIKACLVMENCG 320
A + CL + CG
Sbjct: 1371 AKGAASQTCLAL--CG 1384
>gi|406933301|gb|EKD67994.1| Strongly similar to ATP-dependent DNA helicase [uncultured
bacterium]
Length = 360
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 136/302 (45%), Gaps = 39/302 (12%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
G+GKD S W+ +LI +GYL T D Y ++++ + + L +
Sbjct: 95 GVGKDVSVRAWRQHINELIHHGYLNRT-ADEYPVLTLTGKSRAVLKGEK----------- 142
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
+ EE ET +G +K+ E D++L++ L + R ++A+V Y +
Sbjct: 143 TVRLTVVEEKETF---MGTVKTK---------EHDIELFNKLRQLRSQIAQVERVPAYLI 190
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEH 195
D T+ ++A P + L NI G + +G L + +K +S ++G H
Sbjct: 191 FSDATLVELATYFPQSPEDLHNITGFGTIKMEKYGRAFLNVVTAYCRKNAIS--SRMG-H 247
Query: 196 TAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEA 255
T + + T + T K + M+ E G +I +IA R+ T+ +L
Sbjct: 248 KVRTSRRQRIKRTLSGTTDTKLISLNMF-EQGKTIGEIA----RARQFALSTIEGHLASF 302
Query: 256 VSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKACLV 315
+ G I +L ++ E + IQ+AIS+ G LKPIK LP++I+Y I+A +V
Sbjct: 303 IPSG-HIRIEQL-----VSKEHTALIQKAISQHGT-TALKPIKESLPEEISYGEIRAVIV 355
Query: 316 ME 317
E
Sbjct: 356 YE 357
>gi|399887480|ref|ZP_10773357.1| ATP-dependent DNA helicase [Clostridium arbusti SL206]
Length = 722
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 137/316 (43%), Gaps = 42/316 (13%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
KK++ +F++L +GL K++S LIS+G++
Sbjct: 439 KKILQYRFNELSTYGLMKNYSKKDLSEFINTLISHGFI---------------------- 476
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
+ + P ++L+ N V E + + K + ++ SE + +L+ +L R
Sbjct: 477 NLKEGEYPTVILSDNSMKVLKGEEKVV------FKEAIVVKK--ISENN-ELFEVLRSLR 527
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
K +A G PY + D T+K+++L P K + +I GV Q +G+ L I H
Sbjct: 528 KDIAASDGVPPYFIFPDNTLKEMSLRYPLNKEHMLDISGVGQVKYEKYGETFLNEINHYV 587
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAK--YEAWKMWHEDGLSIQKIANYPGR 239
+K N+ + K E T+ LH + ++ +DG SI++IA
Sbjct: 588 EKNNIEV--KWTERIE-TKTLHTTKTRNRTTNHKEKTHDITINMIKDGKSIKEIAKERNL 644
Query: 240 SAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKN 299
+ + Y E +E F+IN+ L E + I +A K+G DK+ PIK
Sbjct: 645 TLTTVLGHIDKYFREGNTENFEINFDGLFTEDQEQEVILAA-----DKLGM-DKISPIKA 698
Query: 300 ELPDDITYAHIKACLV 315
E+ D I+Y I+A L+
Sbjct: 699 EVSDGISYDAIRAVLL 714
>gi|390943602|ref|YP_006407363.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
gi|390417030|gb|AFL84608.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
Length = 725
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 93/191 (48%), Gaps = 17/191 (8%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL + G+GKD WKT+ Q + +L + I++ Y + V+Q+G ++ + P
Sbjct: 447 DKLSVFGIGKDEDERLWKTVVRQAMINNFLEKDIEN-YGVIKVTQKGLDFIKN------P 499
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
++ +++H+ V D +L + + E +L+ +L ERKK+A+ G
Sbjct: 500 YSVMI-------SKDHDFEQMLVNDSTEDISLGGKAYDE---KLFELLKLERKKVAKSKG 549
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLD 189
PY + D +++++A P+T+ LA I+GV V G L+ I + ++ ++
Sbjct: 550 LPPYVIFQDPSLEEMATVYPTTREELAQINGVGMGKVTKFGSSFLKLIENYVEENDIMTA 609
Query: 190 GKVGEHTAFTR 200
V TA R
Sbjct: 610 SDVVVKTAGNR 620
>gi|410632528|ref|ZP_11343186.1| ATP-dependent DNA helicase RecQ [Glaciecola arctica BSs20135]
gi|410147954|dbj|GAC20053.1| ATP-dependent DNA helicase RecQ [Glaciecola arctica BSs20135]
Length = 728
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 137/310 (44%), Gaps = 38/310 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV+ Q + L + +G +++ W LA QLI G L + ++ Y + ++Q+ L
Sbjct: 438 AEKVLQNQHNLLSTYNIGNEYNKKQWMALARQLIQKGLLNQ--EEQYGGLKLTQKAGDVL 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P + V A H +S TL N G D QL +L +
Sbjct: 496 KGKVP------FFALLQQPVAASGH-----------ASKTLANPG----DQQLVAILKAD 534
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA PYA+ D+T+ ++A P ++ L I GV Q + +G+H L I
Sbjct: 535 RKRLADEANLPPYAIFSDRTLNEMAYYFPHSEENLLRIHGVGQAKLDKYGEHYLMLINDY 594
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKM--WHEDGLSIQKIANYPG 238
QK N+ E + T+ V + + + + ++ ++ G SI +A+
Sbjct: 595 CQKNNI-------EEVSNTQTASKAVVNKASSSNSNSRSIEIVSAYQQGQSIYSLAS--- 644
Query: 239 RSAPIKEQTVVDYLLEAVSEGFDINW-TRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPI 297
+K+ T++++L V +G T L ++ GL+ A ++ ++LKP+
Sbjct: 645 -QFKVKDGTIINHLYRYVQDGHKFAQPTLLLEQSGLSQNQIDMALAAFAE-HSHERLKPV 702
Query: 298 KNELPDDITY 307
+ L + ++Y
Sbjct: 703 FDSLNEQVSY 712
>gi|229085593|ref|ZP_04217828.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-44]
gi|228697741|gb|EEL50491.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-44]
Length = 705
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 18/205 (8%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ +L + RK++A+ G P+ + DQT+K + P A L + G+ +H ++ +
Sbjct: 515 DHPLFEVLRDVRKEIAQGEGVPPFVIFSDQTLKDMCAKMPQNDAELLQVKGIGEHKLVKY 574
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLS 229
G LQ + H ++ N + RK + + L E ++M+ + G
Sbjct: 575 GSQFLQAVIHFIEQ-NPDYADTIKTEVVTERKKSGKASANSHL-----ETYEMYKQ-GTE 627
Query: 230 IQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVG 289
+ IA + + QTV ++L+ EG +++W I SA+Q A
Sbjct: 628 LSMIA----KERNLSSQTVENHLIRCYEEGMEVDWPSFVP-AEYEPLIESAVQHA----- 677
Query: 290 CKDKLKPIKNELPDDITYAHIKACL 314
+ LK IK +LP++++Y I+A L
Sbjct: 678 -EGGLKSIKEQLPNEVSYFMIRAYL 701
>gi|379011907|ref|YP_005269719.1| ATP-dependent DNA helicase RecQ [Acetobacterium woodii DSM 1030]
gi|375302696|gb|AFA48830.1| ATP-dependent DNA helicase RecQ [Acetobacterium woodii DSM 1030]
Length = 739
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 141/324 (43%), Gaps = 38/324 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK++ Q DKL +G+ KDH+ + + L++ GY+ T + + GK
Sbjct: 438 NKKIIAFQLDKLSTYGIMKDHTLESLREIIMTLVAKGYILVTADEYPVLKLTATAGKVLK 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
G + H+ LL + ++ +T++ V + T+ FSE L
Sbjct: 498 GDEKVYHKKHLL------EIKTDKTKTMAKQVSPVDYDETM----FSE--------LRSL 539
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R+ +A+ PY + D T+K++A P + I+GV Q +G + TI+
Sbjct: 540 RQTIAQEKKLPPYVIFHDATLKEMAAYFPMDENEFLKINGVGQTRYDHYGAIFIDTIKRY 599
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHV-------VVNTRTKLTPAKYEAWKMWHE---DGLSI 230
++ + + ++ T+F + V++ T K + ++ +E G S+
Sbjct: 600 AENNPIKIRTRLAIETSFNANQTIEKNRNDAVIDKTTADNGEKQPSHEVTYELFIHGQSM 659
Query: 231 QKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGC 290
+IA + + T++ +L+ EG +NW L +T++ I AI VG
Sbjct: 660 SEIA----KQRSLTVNTILGHLIRCDEEGKTVNWAGL-----VTEDKEVQIINAIGTVGI 710
Query: 291 KDKLKPIKNELPDDITYAHIKACL 314
+ LKPIK LP+ +Y IK +
Sbjct: 711 -EGLKPIKEILPETCSYEDIKIVI 733
>gi|440748399|ref|ZP_20927652.1| ATP-dependent DNA helicase RecQ [Mariniradius saccharolyticus AK6]
gi|436483223|gb|ELP39291.1| ATP-dependent DNA helicase RecQ [Mariniradius saccharolyticus AK6]
Length = 725
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 17/168 (10%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D+ + G G + +WKT+ Q + GYL + I++ Y + VS++G+ YL S
Sbjct: 447 DQSSVFGKGIEDDEKFWKTIVRQALVMGYLEKDIEN-YGVIKVSEKGENYLES------- 498
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
P ++F +++H+ VGD + + N G D +L+ +L ERK++A+
Sbjct: 499 PFSVSF------SKDHDY-EQEVGD-SIAEEVSNSG-KAYDEKLFELLKAERKRVAKAKN 549
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D +++++A P+TK LA I+GV V G L+ I
Sbjct: 550 LPPYVIFQDPSLEEMATVYPTTKEELAQINGVGMGKVAKFGASFLKLI 597
>gi|345306474|ref|XP_001508312.2| PREDICTED: Werner syndrome ATP-dependent helicase-like
[Ornithorhynchus anatinus]
Length = 1751
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 134/328 (40%), Gaps = 70/328 (21%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETI-KDVYRTVSV-SQQGKQYLGSARPDHQPPL 71
L G+GK SNWWK L QLI G L E ++ + + V + +GK + A+ L
Sbjct: 1222 LFGIGKGQPSNWWKALGRQLILEGLLKEVSGQNKFTAICVLTNKGKNWFAEAQSISSQKL 1281
Query: 72 LLTFNGEMV--------------DAEEH--------------------------ETISS- 90
+L N E+ D E+H E ISS
Sbjct: 1282 MLQANEELCPRKLLLPSATTTSSDKEQHFPSKGLTKLTPEKKANLQKMYSYQVAEKISSR 1341
Query: 91 NVGDL--------KSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIK 142
N D+ KS+ T + + M LY LL R+K A P L ++ +
Sbjct: 1342 NKSDMMQLLPEPYKSAKTAISSSEPDYQMMLYGKLLAARQKYANEKDIPPAILATNKVLV 1401
Query: 143 KIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLD----GKVGEHTAF 198
+A RP++ L IDGV++ T LL I+ Q NL D + E T
Sbjct: 1402 DMAKMRPTSVQNLITIDGVSEAKS-TMLAPLLDVIKIFCQTNNLQTDLFSSSRPKEETQL 1460
Query: 199 TRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVV-DYLLEAVS 257
+K V + L+P++ + + + +S++ IA R+ P+ TVV +L +AV
Sbjct: 1461 LQKKEVY----SSLSPSEAITYSWFQDKNMSMRSIAE--SRTLPL---TVVGTHLSQAVK 1511
Query: 258 EGFDINWTRLCDEVGLTDEIFSAIQEAI 285
G+ ++ R GLT E+ I + I
Sbjct: 1512 VGYPVDTER----AGLTPEVQKIITDVI 1535
>gi|338720942|ref|XP_001915839.2| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase-like [Equus caballus]
Length = 1405
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/387 (23%), Positives = 159/387 (41%), Gaps = 70/387 (18%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQ 58
SK++ D ++ G GKD + WW+ L+ QLI+ G+L E + + +++++G+
Sbjct: 959 SKRLAD-KYRSHSFFGTGKDQTRAWWRALSRQLITEGFLVEVPGKEKFIKICTLTKKGRN 1017
Query: 59 YLGSARPDHQPPLLLTFNGEMVDAE----EHETISSNVGDLKSSA-----TLENEGF--- 106
+L A+ L+L N E+ +T+SS+ G SS T EN+
Sbjct: 1018 WLDKAKRGSPQRLILEANEELRPRRFLLPSSKTVSSDTGQHSSSQVPTELTAENKANLEK 1077
Query: 107 -----------------------------------------SEADMQLYHMLLEERKKLA 125
E+ LY L+E R+K A
Sbjct: 1078 MYSYKAFDKISSGSNIPKKSVMLESPRKSYKSSEPVISAQEQESQTLLYGELVEARQKRA 1137
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
P L ++ + +A RP+T + IDGV++ T LL+ I+H SQ +
Sbjct: 1138 HNMDVPPAILATNKILLDMAKMRPTTVENVKRIDGVSEGKA-TMLAPLLEVIKHFSQTNS 1196
Query: 186 LSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKE 245
+ D +K VV + L+ + + ++ E +S++ I+ R+ P+
Sbjct: 1197 IQTDLFPSTKPQEQQKSPVVKDEARSLSHSVAVTYSLFQEKNMSLKSISE--NRTLPL-- 1252
Query: 246 QTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK---DKLKPIKNELP 302
V +LL+A+ G+ ++ R GLT E I + I +K K I+ +P
Sbjct: 1253 TAVGAHLLQALKAGYPLDMER----AGLTPETHKIIADVIRNPPVNSDINKTKLIRMFVP 1308
Query: 303 DDI-TYAHIKACLVM-ENCGISPEVIP 327
++I TY A ++ ++C P P
Sbjct: 1309 ENIDTYLIYMAIEILRKDCDNRPLCQP 1335
>gi|335430604|ref|ZP_08557493.1| ATP-dependent DNA helicase RecQ [Haloplasma contractile SSD-17B]
gi|335431256|ref|ZP_08558139.1| ATP-dependent DNA helicase RecQ [Haloplasma contractile SSD-17B]
gi|334886961|gb|EGM25306.1| ATP-dependent DNA helicase RecQ [Haloplasma contractile SSD-17B]
gi|334887821|gb|EGM26140.1| ATP-dependent DNA helicase RecQ [Haloplasma contractile SSD-17B]
Length = 716
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 136/318 (42%), Gaps = 38/318 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV D ++L HG+ K++ ++ K + LI+ YL +G +Y
Sbjct: 436 AKKVRDFGLEELSTHGIMKEYHADSIKEIISFLIAEDYL-------------GTRGTKY- 481
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P L LT + V + + V D K ++ D L+ L
Sbjct: 482 --------PTLALTTKSKDVLFGNEKVLIKRVID-KHKEEKDSHYVEAYDETLFEKLRSL 532
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R L+ G P+ + D ++ + P T ++ GV +H + +G + I+
Sbjct: 533 RTGLSGEQGVPPFVIFSDAALQDMCRKFPKTDNEFLSVSGVGEHKLSKYGQLFMDIIKDY 592
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
+ ++++D ++ + T +K E + ++ E GLSI +I G S
Sbjct: 593 TNAHDINVD----QYQTTESLETKKKSKSTTTKESKLETYDLYKE-GLSIDEIKTKRGLS 647
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
+ T+ ++L E EG++I++ R ++ + + I + I +VG KLKPIK
Sbjct: 648 ----QTTIENHLFECFKEGYEIDFDRFINK-----DFETEIVDVIKEVGGA-KLKPIKEA 697
Query: 301 LPDDITYAHIKACLVMEN 318
LPD++TY IK + N
Sbjct: 698 LPDEVTYTDIKFTISKYN 715
>gi|431902275|gb|ELK08776.1| Werner syndrome ATP-dependent helicase [Pteropus alecto]
Length = 1338
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 149/364 (40%), Gaps = 69/364 (18%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQYLGSARPDHQPPL 71
G GKD + +WWK L + L++ G+L E + +++ +G+ +L A + L
Sbjct: 877 FFGTGKDQTESWWKALFHHLLTEGFLVEHSGGSKFAKICTLTNKGRSWLHKANTESPQRL 936
Query: 72 LLTFNGEM--------------VDAEEHET--------------------------ISSN 91
+L N E+ + E+H + ISS
Sbjct: 937 ILQANEELCPRQFLLSRSKTVSLGTEQHSSNQVTIELTAKDKSNLEKMYSYKTYDEISSA 996
Query: 92 VGDLKSSATLENEGFS-------------EADMQLYHMLLEERKKLARVTGTAPYALCGD 138
K S L++ G S E LY L+E R+K A P L +
Sbjct: 997 SDFPKKSIMLQSPGKSYNSSELVISSKEQETQTMLYGKLVESRQKYASKMDVPPAILATN 1056
Query: 139 QTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAF 198
+ + +A RP+T + IDGV++ I LL+ I+H Q ++ D
Sbjct: 1057 KILVDMAKIRPTTVENVKRIDGVSEGKAIMLAP-LLEVIKHFCQVNSIQTDLFSSSKPQE 1115
Query: 199 TRKLHV-VVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVS 257
+K + NT L+ ++ + ++ E +S++ +A R P+ E V +LL+AV
Sbjct: 1116 EQKKSLEAKNTACPLSQSEAITYSLFQEKKMSMKSVAE--NRILPLTE--VGMHLLQAVK 1171
Query: 258 EGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK---DKLKPIKNELPDDI-TYAHIKAC 313
G+ ++ R GLT E+ I + I +K+K I+ +P++I TY A
Sbjct: 1172 AGYPLDMER----AGLTPEVQKIITDVIRNPPINSELNKIKLIRMFVPENIDTYLISMAI 1227
Query: 314 LVME 317
++E
Sbjct: 1228 EILE 1231
>gi|449676966|ref|XP_002163905.2| PREDICTED: Werner syndrome ATP-dependent helicase-like [Hydra
magnipapillata]
Length = 261
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 112/236 (47%), Gaps = 20/236 (8%)
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDG---- 190
+ ++ ++ I RPS K+ L IDG+++HL GD ++ I ++ NLSLD
Sbjct: 2 IATNKNLQDIIKFRPSCKSSLLTIDGISEHLCQRIGDAFIKEIEEFCREKNLSLDNMPNK 61
Query: 191 KVGEHTAFTRKLHVVVN---TRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQT 247
V E+++ T K + + L+ + E+++++ E S+ ++A + + E T
Sbjct: 62 PVNENSSITLKNLTLTRGDGYKKPLSGTQLESYELYQEQKSSVSEVA----KQRSLLEDT 117
Query: 248 VVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD--KLKPIKNELPDDI 305
+ +L A+ G I++ RL E+ EI +Q SK D +L PIK+ LP DI
Sbjct: 118 IYGHLSAALVSGKSIDFNRL--EIS-EHEIAKVVQVIRSKEINSDIRRLHPIKDMLPVDI 174
Query: 306 TYAHIKACLVMENC--GISPEVIPPSQKKGNTDELP--SKASETWHAEEPHEVEEC 357
Y I+ + M G++ + P+ N D +P SK + +E +C
Sbjct: 175 GYGKIRFIITMLEITYGVTDNMQTPAIIANNFDYVPKASKVDAYFKKDEASPKVDC 230
>gi|292617367|ref|XP_697980.4| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Danio
rerio]
Length = 1361
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 150/357 (42%), Gaps = 70/357 (19%)
Query: 5 VDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTV--SVSQQGKQYLGS 62
V +F K L G+G+D S WWK L +LI+ YL E T ++ +G+ +L
Sbjct: 942 VPERFRKHSLFGIGRDVSETWWKALGRELIAEKYLMEVTGHSKFTTLCKITTKGRSWLSK 1001
Query: 63 ARPDHQPPLLLTFNGEMV----------DAEEHETISSNV-------------------- 92
A + LLL N ++ D + E SN+
Sbjct: 1002 AEDEKHRQLLLQPNRDLFSRVCAPRRKADPAQVEPTVSNLQSPHIRRTKLGSESPQIVKK 1061
Query: 93 GDLKSSATL-----------ENEGFSEADMQL----YHMLLEERKKLARVTGTAPYALCG 137
GDL S + + G S ++QL Y L+ ER+KLA + P L
Sbjct: 1062 GDLPSRSAARQTQIQTDVRAQTPGASAKEIQLQSELYGKLVSERQKLASIRDIPPALLAT 1121
Query: 138 DQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTA 197
++ + ++ RP T + L +DGV++ L+ I Q L +D V ++A
Sbjct: 1122 NKILLDMSKLRPCTMSSLKQVDGVSEAKAAMLTP-LIDIIAKFCQTHGLQVD--VSSNSA 1178
Query: 198 FTRKLH----VVVNTRTKLTP----AKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVV 249
+ + H VV + + P Y +++ H+ S++++++ RS PI V
Sbjct: 1179 SSVQTHSSRESVVGSVAQCLPDSISITYSLFQIEHK---SLRQVSD--ARSLPIA--VVE 1231
Query: 250 DYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDIT 306
+LL+A G ++ D GL+ I + I++ + D K +++ +P+DI+
Sbjct: 1232 SHLLQAQKMGCAVD----TDRAGLSTSIMNTIRKNTAGSDLCD-FKAVRSRVPEDIS 1283
>gi|15895945|ref|NP_349294.1| DNA helicase [Clostridium acetobutylicum ATCC 824]
gi|337737898|ref|YP_004637345.1| DNA helicase [Clostridium acetobutylicum DSM 1731]
gi|384459408|ref|YP_005671828.1| RecQ protein, superfamily II DNA helicase [Clostridium
acetobutylicum EA 2018]
gi|15025719|gb|AAK80634.1|AE007766_7 RecQ protein, superfamily II DNA helicase [Clostridium
acetobutylicum ATCC 824]
gi|325510097|gb|ADZ21733.1| RecQ protein, superfamily II DNA helicase [Clostridium
acetobutylicum EA 2018]
gi|336293149|gb|AEI34283.1| DNA helicase [Clostridium acetobutylicum DSM 1731]
Length = 714
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 136/312 (43%), Gaps = 48/312 (15%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
KV+ FDKL +G+ KD + L LI+ GYL + + Y TV +SQ+ + L
Sbjct: 441 KVLRFNFDKLSTYGIMKDCTLKQITNLINTLIADGYLYLSDSE-YATVKMSQKSIEVLKG 499
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
+ Q + E ++S+ D L+ +L R
Sbjct: 500 YKKVVQK----------IHIVEELSLST-------------------DNTLFEILKALRL 530
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQ 182
++AR PY + D + ++ P K + I GV + +G+ + IR +
Sbjct: 531 EIARRENVPPYIIFSDSVLSEMCKYYPKDKNSMLQIKGVGEIKYNKYGEIFEEKIREYIK 590
Query: 183 KLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAP 242
+ NL+ + ++ T K+ ++ +K P E + ++ + G++I +A S P
Sbjct: 591 ETNLTPE----DNNKGTLKVPELL---SKKIPTHIETFNLYKK-GITIADMAKIRNLSIP 642
Query: 243 IKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELP 302
T+ +++L+ +EG ++N + + E I E I +G KL+PIK+ LP
Sbjct: 643 ----TIQEHILKCANEGLNVNL-----DAYIPAEYKDLIYEKIRILGT-SKLRPIKDALP 692
Query: 303 DDITYAHIKACL 314
DD+ Y IKA +
Sbjct: 693 DDVDYMAIKAAI 704
>gi|334121014|ref|ZP_08495090.1| ATP-dependent DNA helicase RecQ [Microcoleus vaginatus FGP-2]
gi|333455733|gb|EGK84376.1| ATP-dependent DNA helicase RecQ [Microcoleus vaginatus FGP-2]
Length = 731
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 136/311 (43%), Gaps = 42/311 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K++ Q +L +G+GKD S+ WK L+ L++ G+L E D + + ++++ + +
Sbjct: 450 NQKILQYQHHQLSTYGIGKDRSAEEWKKLSRSLLNQGFLDEKT-DGFPILKLNEKSWEIM 508
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R + E + V S +E EG L+ +L
Sbjct: 509 KRQRTVE------------IAIEPQREVQGKV----RSLAVEVEG-------LFTVLRTL 545
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK++A PY + D++++ +A RP + GV + +G L+ IR+
Sbjct: 546 RKQIADEQFVPPYVVFADKSLRDMAEKRPQNLREFEEVYGVGSNKRDKYGKVFLEAIRNF 605
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
Q+ L G A L V + ++ + W+++ + GL++Q IAN G S
Sbjct: 606 CQEQGLP-SGAASSEVANLPNLSNVASY------SQMQTWELYRQ-GLTVQGIANARGMS 657
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
T+ +L+E + G +++ L + E AI AI +G +KL+ I +
Sbjct: 658 P----NTISGHLIELMEMGREVDINLLVE-----PERQQAIVYAIEVMG-DEKLRAIYDF 707
Query: 301 LPDDITYAHIK 311
L + T+ IK
Sbjct: 708 LEERYTFEEIK 718
>gi|406891234|gb|EKD36913.1| hypothetical protein ACD_75C01327G0003, partial [uncultured
bacterium]
Length = 782
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 141/331 (42%), Gaps = 55/331 (16%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLIS-----YGYLTETIKDVYRTVSVSQQ 55
S+K++ + L +G+G +S+ W+ +A QLI Y Y ++K + V +
Sbjct: 265 SQKILKFGHEILSTYGIGTAYSAKQWRHIARQLIQKSLLLYEYEHGSLKLTPKAWEV-MR 323
Query: 56 GKQYLGSARPDHQPPLLLTFNGEMVDAE-EHETISSNVGDLKSSATLENEGFSEA-DMQL 113
GK+ TF G M A+ EH + + EG +E D L
Sbjct: 324 GKE---------------TFLGRMEGAKKEH-----------GAVLRQREGEAETFDSGL 357
Query: 114 YHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHL 173
+ +L ++RK+LA PYA+ D+T+K++A P T+ L+ I G+ + + + D
Sbjct: 358 FEILRKKRKELADQANLPPYAIFHDRTLKEMATYYPRTRESLSAIYGIGKSKLEKYADAF 417
Query: 174 LQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTP-----AKYEAWKMWHEDGL 228
L IR Q H R+ + + P +Y +G
Sbjct: 418 LDIIREHCQT-----------HQIPERQKPAPMAEPAPIPPDDSGKRRYLVIGERFNEGC 466
Query: 229 SIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKV 288
+I+++A I+ TV+D+L + + + L LT + ++ + +++
Sbjct: 467 TIEQLAG----DFNIQRSTVIDHLYLYLRKNHPLRQNNLLISSSLTSDQRQSVLSSFARL 522
Query: 289 GCKDKLKPIKNELPDDITYAHIKACLVMENC 319
G ++L+P+ +L I Y +K CL+ + C
Sbjct: 523 GT-ERLRPVFEDLNGTIPYEELKLCLLHQLC 552
>gi|288556771|ref|YP_003428706.1| ATP-dependent DNA helicase RecS [Bacillus pseudofirmus OF4]
gi|288547931|gb|ADC51814.1| ATP-dependent DNA helicase RecS [Bacillus pseudofirmus OF4]
Length = 708
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 99/208 (47%), Gaps = 18/208 (8%)
Query: 107 SEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLV 166
+E + +++ L + RK LA PY + D+T+K+++ P TK L+ I GV + +
Sbjct: 517 AEENDEVFEALRDCRKNLAAKENIPPYMVFSDKTLKQMSQYIPLTKEELSMIQGVGEQKL 576
Query: 167 ITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHED 226
+G+ L + + ++ ++ ++ TK T + +D
Sbjct: 577 ERYGETFLNVLSLFKDQKTTMINETATRSSSSSKG--------TKATKGSHLITIKMFQD 628
Query: 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAIS 286
G ++ IA G S EQTV++++L++ EG D+ +E E+ I++A
Sbjct: 629 GQKVEDIAKERGLS----EQTVLNHILKSKDEGIDLKLPTYVEE-----EVRKEIEKAAE 679
Query: 287 KVGCKDKLKPIKNELPDDITYAHIKACL 314
++G D+L+PIK L D ITY I+ +
Sbjct: 680 QIGT-DRLRPIKEALGDHITYQEIRFTI 706
>gi|428224630|ref|YP_007108727.1| ATP-dependent DNA helicase RecQ [Geitlerinema sp. PCC 7407]
gi|427984531|gb|AFY65675.1| ATP-dependent DNA helicase RecQ [Geitlerinema sp. PCC 7407]
Length = 741
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 47/293 (16%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV+ L +G+G+D S + W++LA LI G + ET D + + ++ + +
Sbjct: 457 NKKVLSNGHQALSTYGIGRDRSVDAWRSLARTLIHQGLVDET-SDGFSVLKLNAASWEVM 515
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLE--NEGFSEADMQLYHMLL 118
R + V L + LE E EA+M L+ L
Sbjct: 516 RKQR------------------------TVLVAALPAEPVLEARAEAQIEAEM-LFERLR 550
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK+LA APY + D +++ +A RP+T + A I GV H + +GD + IR
Sbjct: 551 SLRKQLADEQAIAPYMVFADSSLRLMAQQRPTTLQQFAGISGVGSHKLALYGDRFIAEIR 610
Query: 179 HLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTK--LTPAKYEAWKMWHEDGLSIQKIANY 236
++ L++ + +R L +R++ L+ + + H++G S IA
Sbjct: 611 DYCEEQGLTVASE-------SRSLASPARSRSRGALSNTHFATLAL-HQEGASASDIAQQ 662
Query: 237 PGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVG 289
G + T+VD+L + G ++ RL + E +AI EAI+ G
Sbjct: 663 RG----YRLGTIVDHLALLLEAGQRVDIDRL-----VPPERQNAILEAIAAHG 706
>gi|359793461|ref|ZP_09296210.1| ATP-dependent DNA helicase RecQ [Mesorhizobium alhagi CCNWXJ12-2]
gi|359250336|gb|EHK53850.1| ATP-dependent DNA helicase RecQ [Mesorhizobium alhagi CCNWXJ12-2]
Length = 227
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 20/175 (11%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D++ G+G+++ W+++ QLI++G + + + +S+S +G+ +L +P
Sbjct: 68 DQISTFGIGREYDGATWRSILRQLIAHGMIAVDLAG-HGGLSISDRGRDFL-----RDKP 121
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEG-FSEADMQLYHMLLEERKKLARVT 128
L+L T + K +A E AD ++ L E R +LAR
Sbjct: 122 ALML------------RTPRKPRKEGKKAARREAANTLQPADRAMFEALRERRLELARAQ 169
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI-RHLSQ 182
G PY + D+T+ ++A ARP+++ A I GV Q + +GD L I RH ++
Sbjct: 170 GLPPYVIFHDRTLLEMAAARPASRHEFAAISGVGQAKLDRYGDAFLDIITRHATE 224
>gi|258513377|ref|YP_003189599.1| RecQ familyATP-dependent DNA helicase [Desulfotomaculum acetoxidans
DSM 771]
gi|257777082|gb|ACV60976.1| ATP-dependent DNA helicase, RecQ family [Desulfotomaculum
acetoxidans DSM 771]
Length = 793
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 138/316 (43%), Gaps = 62/316 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+K ++ +DK+ +G + N L L+ GYL QQG +Y
Sbjct: 523 AKDIISFSYDKVPCYGQMSSFNRNKIMRLIDSLLGDGYLM-------------QQGSEY- 568
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDL-----KSSATLENEGFSEADMQLYH 115
P L+LT G+ +A E++ D K++ +++ G M++
Sbjct: 569 --------PVLMLTEKGK--NALENKKTLPVWEDAAPQQEKTAGLIDDTG-----MKIIS 613
Query: 116 MLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQ 175
L R KL++ PY D+ +++IAL +PS+ A+L I+G+ + V HG +L
Sbjct: 614 ELKNYRLKLSQQEQKPPYVYFHDRVLEEIALMQPSSNAQLLLINGMGEKKVAAHGQDILN 673
Query: 176 TIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIAN 235
+ + D + + T++ +++N +L + G SI+ IA
Sbjct: 674 IVAKYT-----GTDQQANIDSTATKE--ILLNKVKELCRS-----------GYSIENIAQ 715
Query: 236 YPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLK 295
GR+ TV YL + VSEG +L L+ E+ I I K G +LK
Sbjct: 716 ETGRAVS----TVETYLEQLVSEG------KLELAELLSWEVRKQIYLVIEKFGLMSQLK 765
Query: 296 PIKNELPDDITYAHIK 311
IK+ LP+DI+Y +IK
Sbjct: 766 IIKDNLPEDISYHYIK 781
>gi|294499016|ref|YP_003562716.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium QM B1551]
gi|294348953|gb|ADE69282.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium QM B1551]
Length = 711
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 128/314 (40%), Gaps = 50/314 (15%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKVVD FDKL +G+ D S+ LIS ++ + + T+SV+ +GK L
Sbjct: 439 NKKVVDFGFDKLKTYGVMSDRSAKEVSDFIEYLISEQFIL-VGQGSFPTLSVAAKGKGVL 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
E V +E + V D +L+ L
Sbjct: 498 --------------LGTEKVMRKEQMEVKQIV----------------QDDELFAHLRSV 527
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA G P+ + D T+ + P T + A + GV + +G+ I+
Sbjct: 528 RKQLADEAGVPPFVIFSDDTLHDMCAKLPVTLEQFATVKGVGEQKQERYGERFTTEIKQF 587
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
+K D K + +K + L YE + + G S+ +IA
Sbjct: 588 CEK---HPDRKREVSSPAPKKARASSKEGSHLM--TYELF----QQGKSLDEIAA----E 634
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
+ T+ ++L + E +I+W+ L++E I EA VG +KLKPIK E
Sbjct: 635 RELSRITIENHLFKCAEEEKEIDWSPF-----LSEEDEQLILEAAFSVG-DEKLKPIKEE 688
Query: 301 LPDDITYAHIKACL 314
LP++ITY IK L
Sbjct: 689 LPENITYFMIKVAL 702
>gi|166240117|ref|XP_001732947.1| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
discoideum AX4]
gi|165988751|gb|EDR41122.1| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
discoideum AX4]
Length = 1136
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 102/205 (49%), Gaps = 26/205 (12%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTV-SVSQQGKQYLGS--ARPDHQPP 70
L+G G S WWK L +Q+ + + E ++T+ ++Q+GK L S + Q P
Sbjct: 782 LYGKGSLFSEKWWKELIHQMKAESIIVEHCSSNFKTILKITQKGKDILNSNFQQQKQQQP 841
Query: 71 LLLTFNG----EMVDAEEHET-------------ISSNVGDLKSSATLENEGFSEAD--- 110
+L+ N E+ + + H ++++ + S L+ E F++ +
Sbjct: 842 ILIMNNDILKPEIKNTQFHRNNITQQQSQQQSQKLNNDNSNNNESKLLKIEAFTKPNEID 901
Query: 111 ---MQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVI 167
M+L+ +L+E RK+L+ + T + + + T++KIA RP T L+ I+G++ V+
Sbjct: 902 PIVMKLFKILIEFRKELSMFSETPTFLIFPENTLRKIAQFRPLTIDELSQIEGMDHKKVL 961
Query: 168 THGDHLLQTIRHLSQKLNLSLDGKV 192
HG +L+ ++ S + LS+ K+
Sbjct: 962 DHGQSILKKVQEFSIQEGLSITPKL 986
>gi|332707801|ref|ZP_08427828.1| ATP-dependent DNA helicase RecQ [Moorea producens 3L]
gi|332353504|gb|EGJ33017.1| ATP-dependent DNA helicase RecQ [Moorea producens 3L]
Length = 709
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 129/311 (41%), Gaps = 54/311 (17%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
SKK+ L +G+GKD ++ WK L L+ G + +T D Y + +++ + L
Sbjct: 442 SKKIEQYGHHLLSTYGIGKDQTAEAWKILVRSLLHQGLVDQTT-DGYSVLKLNKLSWEIL 500
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R + P ++ +G++ N +EA++ L L +
Sbjct: 501 RKQRSVYVPI-------------PQSSVEKALGEI-------NPRVAEAEI-LLEKLRKL 539
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA PY + D T+K +A +P T A + GV Q+ V +G+ + IR
Sbjct: 540 RKQLADRQSIPPYVVFADSTLKLMAQLKPKTLEHFAKLSGVTQYKVTQYGEQFISEIRAF 599
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
Q+ L L + Y +++ GLS+++IA G +
Sbjct: 600 CQEQKLP----------------------EPLPSSTYMKTLQFYQQGLSVEEIAQQRGYT 637
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
+T++D+L + + ++ RL + E I +AI KVG LK ++
Sbjct: 638 T----RTIIDHLSQLIEMNQPVDLKRL-----VPLERHEPIIKAIEKVG-DQYLKKLREY 687
Query: 301 LPDDITYAHIK 311
L + +Y IK
Sbjct: 688 LGESYSYDDIK 698
>gi|425444700|ref|ZP_18824746.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9443]
gi|425454418|ref|ZP_18834158.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9807]
gi|389735511|emb|CCI01005.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9443]
gi|389804921|emb|CCI15689.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9807]
Length = 703
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 130/310 (41%), Gaps = 60/310 (19%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+++ Q L +G+GKD + WK L+ L+ L ET +D +R + ++Q + +
Sbjct: 443 ERITQYQHHLLSTYGIGKDKTVGEWKRLSRSLVQQNLLVET-EDNFRILKLNQNSWEVMR 501
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
R + NG+++ + T+ S++ L+ L + R
Sbjct: 502 KQRSVF-IAVPQKANGQILGDDNPNTLESDL--------------------LFERLRQLR 540
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
KK+A G PY + D +++ +A ++P + I GV Q V +GD + I
Sbjct: 541 KKIADSQGVPPYVIFHDSSLRLMAQSKPRSLGEFRQISGVVQSKVQQYGDIFIAAINDFC 600
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
Q SL P+ +++DGL+ ++IA R
Sbjct: 601 QD---SL-------------------------PSTQFLTLQYYQDGLNAEEIA----RKR 628
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNEL 301
+K T+ ++L + + G++I+ +L ++ I+ AI KVG LK +K L
Sbjct: 629 SLKVSTIYEHLAKLLEAGYEIDINQL-----VSKNKQEYIRLAIKKVG-DQSLKTLKENL 682
Query: 302 PDDITYAHIK 311
D+ +Y IK
Sbjct: 683 GDNYSYEEIK 692
>gi|428302021|ref|YP_007140327.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 6303]
gi|428238565|gb|AFZ04355.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 6303]
Length = 724
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 131/303 (43%), Gaps = 42/303 (13%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D L +G+GKD S + W+ L L+ G L E D Y + ++ + + R +
Sbjct: 451 DTLSTYGIGKDKSLDEWRMLGRSLLHQG-LVEQSSDGYGVLKLNSLSWEVMRRQR--NVS 507
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
+LT E V + + +++ + L L RK LA
Sbjct: 508 VAVLTVQRENVKEKSQKAVAAEM--------------------LLQRLRGLRKSLADEQK 547
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLD 189
APYA+ D ++K ++ + P TKA A + GV +H + +GD + I+ ++ N+
Sbjct: 548 IAPYAIFADSSLKLMSQSLPRTKADFAKLSGVGKHKLTEYGDRFVAEIQAFCRENNIPET 607
Query: 190 GKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKM-WHEDGLSIQKIANYPGRSAPIKEQTV 248
+ T FT T + +P+ E + H+ GLSI +IA + ++ T+
Sbjct: 608 KIIETKTQFT--------TVSDDSPSTTELVTLQLHKQGLSIGEIA----QERNLRSTTI 655
Query: 249 VDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYA 308
+ +L + + + I+ +L D E I++ + +G L PIK L DD ++
Sbjct: 656 IRHLSDLIEKDQSIDINQLVDL-----EKQKKIRQVLDILG-DISLTPIKEYLGDDYSFD 709
Query: 309 HIK 311
I+
Sbjct: 710 DIR 712
>gi|428320783|ref|YP_007118665.1| ATP-dependent DNA helicase RecQ [Oscillatoria nigro-viridis PCC
7112]
gi|428244463|gb|AFZ10249.1| ATP-dependent DNA helicase RecQ [Oscillatoria nigro-viridis PCC
7112]
Length = 731
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 129/313 (41%), Gaps = 46/313 (14%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K++ Q KL +G+GKD S+ WK L+ L++ G+L E D + + ++++ + +
Sbjct: 450 NQKILQYQHHKLSTYGIGKDRSAEDWKKLSRSLLNQGFLDEKT-DGFPILKLNEKSWEIM 508
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R + E + V S +E E L+ +L
Sbjct: 509 KRQRTVE------------IAIEPQREVQGKV----RSLAVEVEA-------LFTILRTL 545
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK++A PY + D++++ +A RP + GV + +G L+ IR
Sbjct: 546 RKQIADEQFVPPYVVFADKSLRDMAEKRPQNLREFEEVYGVGSNKRDKYGKVFLEAIRSF 605
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMW--HEDGLSIQKIANYPG 238
Q+ L G + V N A Y + W + GL++Q IAN G
Sbjct: 606 CQEQGLPTGGASSD----------VANLPNLSNVASYSQMQTWELYRQGLTVQGIANARG 655
Query: 239 RSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIK 298
S T+ +L+E + G +++ L + E AI AI +G +KL+ I
Sbjct: 656 MSP----NTISGHLIELMEMGREVDINLLVE-----SERQQAIVYAIEVMG-DEKLRAIY 705
Query: 299 NELPDDITYAHIK 311
L + T+ IK
Sbjct: 706 EFLEERYTFEEIK 718
>gi|257458284|ref|ZP_05623433.1| ATP-dependent DNA helicase RecQ [Treponema vincentii ATCC 35580]
gi|257444311|gb|EEV19405.1| ATP-dependent DNA helicase RecQ [Treponema vincentii ATCC 35580]
Length = 650
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 11/183 (6%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
K++++ DKL G+GK+ S + W TL+ LI G L E I D Y +++++ GKQ L
Sbjct: 467 KRILENGHDKLSTWGIGKELSKDDWFTLSDALIHAG-LIEKIGD-YHVLTITENGKQVLA 524
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISS-------NVGDLKSSATLENEGFSEADMQLY 114
S P L+ D + + S N G+ K + + +E D LY
Sbjct: 525 SRAKIELPVELIGGRALKHDEAKKHAVGSKQNNTAHNKGEYKRGEIVRS--LNEEDAALY 582
Query: 115 HMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLL 174
+ E R+ A PY + GD+T++ + L +P T L N+ G+ + G LL
Sbjct: 583 ESIKEWRRHAAEAENVPPYVIFGDRTLEDLILKKPRTARELLNVFGIGEIKAEKFGSALL 642
Query: 175 QTI 177
+ +
Sbjct: 643 RLV 645
>gi|395213964|ref|ZP_10400385.1| ATP-dependent DNA helicase RecQ [Pontibacter sp. BAB1700]
gi|394456500|gb|EJF10790.1| ATP-dependent DNA helicase RecQ [Pontibacter sp. BAB1700]
Length = 726
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 27/182 (14%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++ V + D+L + G GK+H + +W ++ Q++ YL + I+ + V ++Q+G ++
Sbjct: 439 NQHVTSYEHDQLEVFGAGKEHDAQFWSSVLRQVLLSEYLEKDIEQ-FGIVKLTQKGLNFI 497
Query: 61 GSARP-----DHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYH 115
+ P DH + E+ EE E ++ G D L+
Sbjct: 498 SNPHPIQLTKDHD------YEQEVKADEEKEETQASAGH---------------DEVLFD 536
Query: 116 MLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQ 175
ML RKKLA+ G PY L D +IK++A P+TK LA+I GV V G L
Sbjct: 537 MLKNLRKKLAKEKGLPPYVLFQDPSIKEMATVYPTTKEDLAHIAGVGMGKVQKFGKPFLD 596
Query: 176 TI 177
I
Sbjct: 597 MI 598
>gi|418407600|ref|ZP_12980917.1| ATP-dependent DNA helicase RecQ [Agrobacterium tumefaciens 5A]
gi|358005586|gb|EHJ97911.1| ATP-dependent DNA helicase RecQ [Agrobacterium tumefaciens 5A]
Length = 602
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D++ +G+GK+H + W+ + Q+++ L E + +S+S++G+++L +P
Sbjct: 445 DRITTYGIGKEHDNRTWRAILRQMVAL-RLIEVDLAGHGGLSISEEGRRFL-----REKP 498
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
L+L A + T K +AT+ EAD L+ L +R ++AR
Sbjct: 499 SLMLRIPSAPRSARQQAT-------RKPAATV----LPEADRSLFEALRAKRMEIARAQN 547
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D+T+ ++A ARP++ +A I GV + +G L I
Sbjct: 548 VPPYVIFHDKTLIELAAARPASVGEMARIPGVGDTKLERYGPAFLAAI 595
>gi|425433706|ref|ZP_18814184.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9432]
gi|389675683|emb|CCH95185.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9432]
Length = 701
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 130/310 (41%), Gaps = 60/310 (19%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+++ Q L +G+GKD + WK L+ L+ L ET +D +R + ++Q + +
Sbjct: 443 ERITQYQHHLLSTYGIGKDKTLGEWKRLSRSLVQQNLLVET-EDNFRILKLNQHSWEVMR 501
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
R + A + +GD +N E+D+ L+ L + R
Sbjct: 502 KQR-------------SVFIAVPQKANGPILGD-------DNPNMVESDL-LFERLRQLR 540
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
KK+A G PY + D +++ +A ++P + + I GV Q V +GD + I
Sbjct: 541 KKIADSQGVPPYVIFHDSSLRLMAQSKPRSLEQFRQISGVVQSKVQQYGDIFIAAINDFC 600
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
Q SL P+ +++DGL+ ++IA R
Sbjct: 601 QD---SL-------------------------PSTQFLTLQYYQDGLNAEEIA----RKR 628
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNEL 301
+K T+ ++L + + G++I+ +L + I+ AI KVG LK +K L
Sbjct: 629 SLKVSTIYEHLAKLLEAGYEIDINQL-----VPKNKQEYIRLAIKKVG-DQSLKTLKENL 682
Query: 302 PDDITYAHIK 311
D+ +Y IK
Sbjct: 683 GDNYSYEEIK 692
>gi|390333039|ref|XP_001184484.2| PREDICTED: uncharacterized protein LOC754123 [Strongylocentrotus
purpuratus]
Length = 1976
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 96/211 (45%), Gaps = 27/211 (12%)
Query: 112 QLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGD 171
+LY L+ R +A G APY + ++ + +A+ RP++ + IDG+ Q G
Sbjct: 1603 KLYSKLMNLRNNIASEMGAAPYMVANNKNLLDLAVIRPASIKSMLKIDGIAQARADNFGA 1662
Query: 172 HLLQTIRHLSQKLNLSLDG-KVGEHTAFTRKLHVVVNTRT---------------KLTPA 215
++ I+ ++ ++ LD ++ + K+ ++ KL+
Sbjct: 1663 QFIEAIKSFCKENDIQLDNFPASAPSSISDKVESSQSSGPSSSGGCTFLRGAKVGKLSET 1722
Query: 216 KYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTD 275
K E++ ++HE G++++ IA G +K T+ +L +A+ G+ +N+ R G+T
Sbjct: 1723 KNESYTLFHEKGMTLEDIAIRRG----LKVSTIGGHLADAIEAGYPVNFAR----AGITP 1774
Query: 276 EIFSAIQEAISKVGCKDK---LKPIKNELPD 303
I I++ I L PIK LPD
Sbjct: 1775 SIQKEIEKVIRDPPINSDISVLGPIKELLPD 1805
>gi|390440423|ref|ZP_10228752.1| ATP-dependent DNA helicase recQ [Microcystis sp. T1-4]
gi|389836165|emb|CCI32878.1| ATP-dependent DNA helicase recQ [Microcystis sp. T1-4]
Length = 703
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 124/297 (41%), Gaps = 60/297 (20%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
+G+GKD + WK L+ L+ L ET +D +R + ++Q + + R
Sbjct: 456 YGIGKDKTVEEWKRLSRSLVQQNILVET-EDDFRILKLNQHSWEVMRKQR---------- 504
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYA 134
+ A + VGD +N E+D+ L+ L + RKK+A G PY
Sbjct: 505 ---SVFIAVPQKANGQIVGD-------DNPNMVESDL-LFERLRQLRKKIADSQGVPPYV 553
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGE 194
+ D +++ +A ++P + I GV V +GD + I Q SL
Sbjct: 554 IFHDSSLRLMAQSKPRNLGQFRQISGVVHSKVQQYGDIFIAAINDFCQD---SL------ 604
Query: 195 HTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLE 254
P+ +++DGL+ ++IA R +K T+ ++L +
Sbjct: 605 -------------------PSTQFLTLQYYQDGLNAEEIA----RKRSLKVSTIYEHLAK 641
Query: 255 AVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIK 311
+ G++I+ +L ++ I+ AI KVG LK +K L D+ +Y IK
Sbjct: 642 LLEAGYEIDINQL-----VSKNKQEYIRLAIKKVG-DQSLKTLKENLGDNYSYEEIK 692
>gi|330844596|ref|XP_003294206.1| hypothetical protein DICPUDRAFT_159167 [Dictyostelium purpureum]
gi|325075373|gb|EGC29269.1| hypothetical protein DICPUDRAFT_159167 [Dictyostelium purpureum]
Length = 849
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 30/200 (15%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQG---------KQYLGSARP 65
+G G S +WK LA QL + YLTET +VY S++G K ++GS +
Sbjct: 478 YGKGISFSLKFWKELANQLKTLDYLTETTSNVYTITKFSKKGWELYKSPDLKVFIGSNKI 537
Query: 66 DHQPPLLLTFNGEMVDAEE--------------HETISSNVGDLKSSATLENEGFSEADM 111
L F + +++ I SN + ++ T S +++
Sbjct: 538 LKDEYKLTNFYKNQLSSKKLSTSISISSTISPSKNNIISNKWSVLAAPT------SNSNI 591
Query: 112 Q-LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHG 170
Q L+ +L+E RK L+ +T + L ++T++ IA RPS+ L I+G+ + + HG
Sbjct: 592 QSLFQILVEYRKSLSALTEIPEFLLFSEKTLRHIAETRPSSLDSLRLIEGLEEKKIKDHG 651
Query: 171 DHLLQTIRHLSQKLNLSLDG 190
+ +L ++ S++ +L+LD
Sbjct: 652 NSILLKVKEFSKQKSLNLDN 671
>gi|425461242|ref|ZP_18840722.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9808]
gi|389825935|emb|CCI23927.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9808]
Length = 701
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 132/310 (42%), Gaps = 60/310 (19%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+++ Q L +G+GKD + WK L+ L+ L ET +D +R + ++Q + +
Sbjct: 443 ERITQYQHHLLSTYGIGKDKTLGEWKRLSRSLVQQNLLIET-EDNFRILKLNQHSWEVMR 501
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
R + A + +GD +N E+D+ L+ L + R
Sbjct: 502 KQR-------------SVFIAVPQKANGQILGD-------DNPNTMESDL-LFDRLRQLR 540
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
KK+A G PY + D +++ +A ++P + + I GV Q V +GD + I
Sbjct: 541 KKIADSQGVPPYVIFHDSSLRLMAQSKPRSLEQFRQISGVVQSKVQQYGDIFIAAINDFC 600
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
Q SL P+ +++DGL++++IA R
Sbjct: 601 QD---SL-------------------------PSTQFLTLQYYQDGLNVEEIA----RKR 628
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNEL 301
+K T+ ++L + + G++I+ +L ++ I+ AI K+G LK +K L
Sbjct: 629 SLKVSTIYEHLAKLLEAGYEIDINQL-----VSKNKQEYIRLAIKKMG-DQSLKTLKENL 682
Query: 302 PDDITYAHIK 311
D+ +Y IK
Sbjct: 683 GDNYSYEEIK 692
>gi|218245896|ref|YP_002371267.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8801]
gi|218166374|gb|ACK65111.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8801]
Length = 709
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 123/300 (41%), Gaps = 60/300 (20%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
+G+G+D S WK L LI G L ET D + + +++ + L R
Sbjct: 456 YGIGQDRSVAEWKMLGRSLIHQGLLDET-SDGFSVLKLNKGSWEVLRKQR---------- 504
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQL-YHMLLEERKKLARVTGTAPY 133
T+ + +S L A+++L + L + RK+LA APY
Sbjct: 505 ------------TVEIAITQASASKVLGEYNPRAAEIELLFERLRQLRKQLADSNQIAPY 552
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVG 193
+ D +++ +A +P T A I GV + + +G+ L IR SQ+ +L +
Sbjct: 553 VIFADSSLRLMAQLKPKTLEEFAKISGVTDYKLSQYGERFLSEIRAFSQEQSLP-NPLPT 611
Query: 194 EHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLL 253
+ T +L ++ GL++Q IA G +KE TV +L
Sbjct: 612 QSNMITLQL---------------------YQQGLNVQDIAEMRG----LKESTVYSHLS 646
Query: 254 EAV--SEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIK 311
E + + DIN L + L I +AI K+G L PIK L D+ +Y I+
Sbjct: 647 ELIEMQQPVDINQFVLPVKKDL-------IIQAIKKIG-DQSLTPIKEYLGDNYSYNEIR 698
>gi|410724041|ref|ZP_11363242.1| ATP-dependent DNA helicase RecQ [Clostridium sp. Maddingley
MBC34-26]
gi|410602597|gb|EKQ57075.1| ATP-dependent DNA helicase RecQ [Clostridium sp. Maddingley
MBC34-26]
Length = 816
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 92/188 (48%), Gaps = 31/188 (16%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV+ FD+L +GL K++SS K LIS+GY+T ++ Y +S++++ ++ L
Sbjct: 438 NKKVIQFHFDELSTYGLMKEYSSEKLKNFINTLISHGYIT-VVEGTYPVLSLNEKSRRVL 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S E V+ +E + E ++ D +L+ +L
Sbjct: 497 TSQ--------------EKVELKEFKI----------------ETKAKEDNELFEILRSI 526
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R++LA+ G PY + GD T++++A+ P +K + I GV + +G +TI+
Sbjct: 527 RQELAKENGVPPYIIFGDVTLREMAVNYPISKESMLKISGVGEVKYSKYGKVFEKTIKQY 586
Query: 181 SQKLNLSL 188
++ N+ +
Sbjct: 587 VEEHNIQV 594
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 99/251 (39%), Gaps = 43/251 (17%)
Query: 82 AEEHET-ISSNVGDLKSSATLENEGFSE-----ADMQLYHMLLEERKKLARVTGTAPYAL 135
EEH +S+ + +S ENE D++LY L E RK+ A+ P A+
Sbjct: 587 VEEHNIQVSNTLATTSNSNVHENEAEDSKLEVSTDLELYERLDEARKEFAKKENVLPQAI 646
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEH 195
T+K+I+ P + +L +I G+ + +GD +++ + N L+ E
Sbjct: 647 LTMNTLKEISGRYPDSLEKLKDISGIGPKKISLYGDEIVKIV-------NNYLEHNQKEI 699
Query: 196 TAFTRKLHVVV---------NTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQ 246
T R+ V+ + K ++ + LSI I Y
Sbjct: 700 TWVERRRRKVIIDGEERESNEIAIDMLKQKINIHEISEKIELSISTILGY---------- 749
Query: 247 TVVDYLLEAVSEGFDINWTRLC--DEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDD 304
V DY+ E FDIN ++VGL + + DK+ +K ELP
Sbjct: 750 -VTDYIKEFGDNIFDINLEEFYSPEDVGLVIN--------VCERNGHDKISILKKELPSH 800
Query: 305 ITYAHIKACLV 315
I Y I++ ++
Sbjct: 801 IKYETIRSIIL 811
>gi|406659948|ref|ZP_11068084.1| ATP-dependent DNA helicase recQ [Cecembia lonarensis LW9]
gi|405556351|gb|EKB51290.1| ATP-dependent DNA helicase recQ [Cecembia lonarensis LW9]
Length = 726
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 94/199 (47%), Gaps = 32/199 (16%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D+L + G GK+ WKT+ Q + G+L + I++ Y + ++ +G++Y
Sbjct: 447 DQLNVFGKGKEDDERLWKTVIRQSMIGGFLEKDIEN-YGVIKLTAKGEKY-------QNE 498
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEA--------DMQLYHMLLEER 121
P +TF ++H+ + LENE EA D +L+ +L ER
Sbjct: 499 PYAVTF------CKDHDF----------ESMLENETPEEAPLAGGKAYDEKLFELLKAER 542
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
KK+A+ G PY + D +++++A P+++ LA I+GV V G L+ I +
Sbjct: 543 KKVAKAKGLPPYVIFQDPSLEEMATVYPTSREELAQINGVGMGKVAKFGGPFLKLIENYV 602
Query: 182 QKLNLSLDGKVGEHTAFTR 200
++ ++ V TA TR
Sbjct: 603 EENDIITASDVVVKTAGTR 621
>gi|257058944|ref|YP_003136832.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8802]
gi|256589110|gb|ACU99996.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8802]
Length = 709
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 123/300 (41%), Gaps = 60/300 (20%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
+G+G+D S WK L LI G L ET D + + +++ + L R
Sbjct: 456 YGIGQDRSVAEWKMLGRSLIHQGLLDET-SDGFSVLKLNKGSWEVLRKQR---------- 504
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQL-YHMLLEERKKLARVTGTAPY 133
T+ + +S L A+++L + L + RK+LA APY
Sbjct: 505 ------------TVEIAITQASASKVLGEYNPRAAEIELLFERLRQLRKQLADSNQIAPY 552
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVG 193
+ D +++ +A +P T A I GV + + +G+ L IR SQ+ +L +
Sbjct: 553 VIFADSSLRLMAQLKPKTLEEFAKISGVTDYKLSQYGERFLSEIRAFSQEQSLP-NPLPT 611
Query: 194 EHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLL 253
+ T +L ++ GL++Q IA G +KE TV +L
Sbjct: 612 QSNMITLQL---------------------YQQGLNVQDIAEMRG----LKESTVYSHLS 646
Query: 254 EAV--SEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIK 311
E + + DIN L + L I +AI K+G L PIK L D+ +Y I+
Sbjct: 647 ELIEMQQPVDINQFVLPVKKDL-------IIQAIKKIG-DQSLTPIKEYLGDNYSYNEIR 698
>gi|392393904|ref|YP_006430506.1| ATP-dependent DNA helicase, RecQ-like protein [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390524982|gb|AFM00713.1| ATP-dependent DNA helicase, RecQ-like protein [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 720
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 34/220 (15%)
Query: 108 EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVI 167
E + L+ L R+++A PY + D T++++A + P + + GV + +
Sbjct: 516 EESLTLFEYLRGLRREVAANEHLPPYMIFSDSTLREMAESCPRNRTEFLRLGGVGERKLE 575
Query: 168 THGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWK------ 221
+GD LQ ++ QK K+ + T R L + L PA+ E +
Sbjct: 576 KYGDIFLQGVQDFFQK-----QAKMIQSTKSERALE------SHLEPARLEQPQEKVSKV 624
Query: 222 -------MWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLT 274
M +++G S+++IA R K T+ D++L A EG I+W+ ++
Sbjct: 625 PSFLVTYMLYQEGKSLEEIA----RLRNYKLITIQDHILRAFKEGHQISWSDF-----IS 675
Query: 275 DEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKACL 314
D+ I I +G +KL+PIK+ LP D+ + IK+ +
Sbjct: 676 DDQEQLILTVIQTLGI-EKLRPIKDALPADVDWMAIKSVI 714
>gi|399026913|ref|ZP_10728551.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. CF136]
gi|398075677|gb|EJL66783.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. CF136]
Length = 731
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 117/261 (44%), Gaps = 35/261 (13%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
G G DH +W L Q++ GYL++ I + Y V ++Q G ++ +P ++
Sbjct: 459 FFGSGSDHDEKYWMALLRQVLVAGYLSKDI-ETYGVVKITQSGLDFI--KKP---ISFMM 512
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
+ + E +AE+ +++ KSS T AD L ML E RKK+A+ G P+
Sbjct: 513 SEDHEYNEAEDDAIVTAA----KSSGT--------ADEVLMTMLRELRKKVAKKLGVPPF 560
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI-RHLSQKLNLSLDGKV 192
+ D +++ +AL P T L NI GV + +G + I R++ + D V
Sbjct: 561 VVFQDPSLEDMALKYPVTLTELYNIHGVGEGKAKKYGGDFVALINRYVEDNDIIRPDDLV 620
Query: 193 GEHTAFT--RKLHVVVNTRTKLTPAKYEAWKMWHEDGL--SIQKIANYPGRSAPIK---- 244
+ T KL+++ N KL+ + K D L +++I Y G IK
Sbjct: 621 VKSTGVNSANKLYIIQNIDRKLSLNDIASAKGLTMDTLIKEMEQIV-YSGTKLNIKYWVD 679
Query: 245 -------EQTVVDYLLEAVSE 258
++ + DY +E+ S+
Sbjct: 680 DMLDDDQQEEIHDYFMESESD 700
>gi|425450984|ref|ZP_18830806.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 7941]
gi|389767941|emb|CCI06812.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 7941]
Length = 701
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 131/310 (42%), Gaps = 60/310 (19%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+++ Q L +G+GKD + WK L+ L+ L ET +D +R + ++Q + +
Sbjct: 443 ERITQYQHHLLSTYGIGKDKTLGEWKRLSRSLVQQNLLVET-EDNFRILKLNQHSWEVMR 501
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
R + A + +GD +N E+D+ L+ L + R
Sbjct: 502 KQR-------------SVFIAVPQKANGPILGD-------DNPNTMESDL-LFDRLRQLR 540
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
KK+A G PY + D +++ +A ++P + + I GV Q V +GD + I
Sbjct: 541 KKIADSQGVPPYVIFHDSSLRLMAQSKPRSLEQFRQISGVVQSKVQQYGDIFIAAINDFC 600
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
Q SL P+ +++DGL+ ++IA R
Sbjct: 601 QD---SL-------------------------PSTQFLTLQYYQDGLNAEEIA----RKR 628
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNEL 301
+K T+ ++L + + G++I+ +L ++ I+ AI KVG LK +K L
Sbjct: 629 SLKVSTIYEHLAKLLEAGYEIDINQL-----VSKNKQEYIRLAIKKVG-DQSLKTLKENL 682
Query: 302 PDDITYAHIK 311
D+ +Y IK
Sbjct: 683 GDNYSYEEIK 692
>gi|49118127|gb|AAH73087.1| FFA-1 protein [Xenopus laevis]
Length = 1434
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 104/417 (24%), Positives = 168/417 (40%), Gaps = 90/417 (21%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDV-YRTV-SVSQQGKQ 58
S++V D +F L GKD + +WK LA QLI+ GYL E+ + T+ ++ +G
Sbjct: 934 SQRVPD-RFRNHSLFSSGKDQTEAFWKVLARQLITEGYLQESSGQTKFSTICGLTSKGSN 992
Query: 59 YLGSARPDHQPPLLLTFNGEM--------------------------------------- 79
+L A + P LLL N E+
Sbjct: 993 WLIKANNEQCPSLLLPSNNELCLQRTRVSNFSSAQAHSSMVPHASSNTRSSMPKAGPEKM 1052
Query: 80 -----VDAEEHETISSNVGDLKSSATLENE-----------GFSEADMQ--LYHMLLEER 121
+E E +S G KSS L+ E ++Q LY L+ R
Sbjct: 1053 ELKDKFSYQEAERLSKAAGVSKSSFKLQTPCKLSRPPEPEVSPREMELQTTLYGRLVVAR 1112
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
+K+A P L ++ + +A RP+T + +DGV++ LL+ ++
Sbjct: 1113 QKIASERDIPPAVLATNKVLVDMAKLRPTTSENMKKLDGVSEAKSAMLAP-LLEVVKEFC 1171
Query: 182 QKLNLSLD---GKV--GEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANY 236
+L +D G V E T FT + R L ++ ++ ++ E LS++KIA+
Sbjct: 1172 IANSLKVDVFSGSVSQSESTFFTPREQ----ERISLPESQRMSYSLFQEQNLSLKKIADV 1227
Query: 237 PGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKL-- 294
S + V +L +A+ G+ + R GLT E+ I +AI K L
Sbjct: 1228 RCLSMAV----VGMHLWQALKAGYSFDVQR----AGLTPEMKKLITDAIKKPPINSDLSS 1279
Query: 295 -KPIKNELPDDITYAHIKACL-VMENCGIS-----PEVIPPSQKK-GNTDELPSKAS 343
K I+ +P +I I+ + ++E G S PE P+QK T+E P S
Sbjct: 1280 FKAIREYVPANIDGYLIRMVISLLEKEGSSGAQGQPEF--PTQKTLIQTEENPKNVS 1334
>gi|440756898|ref|ZP_20936098.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa TAIHU98]
gi|440172927|gb|ELP52411.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa TAIHU98]
Length = 701
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 130/310 (41%), Gaps = 60/310 (19%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+K+ Q L +G+GKD + WK L+ L+ L ET +D +R + ++Q + +
Sbjct: 443 EKITQYQHHLLSTYGIGKDKTLGEWKRLSRSLVQQNLLVET-EDNFRILKLNQHSWEVMR 501
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
R + A + +GD +N E+D+ L+ L + R
Sbjct: 502 KQR-------------SVFIAVPQKANGPILGD-------DNPNTMESDL-LFDRLRQLR 540
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
KK+A G PY + D +++ +A ++P + + I GV Q V +GD + I
Sbjct: 541 KKIADSQGVPPYVIFHDSSLRLMAQSKPRSLEQFRQISGVVQSKVQQYGDIFIAAINDFC 600
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
Q SL P+ +++DGL+ ++IA R
Sbjct: 601 QD---SL-------------------------PSTQFLTLQYYQDGLNAEEIA----RKR 628
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNEL 301
+K T+ ++L + + G++I+ +L + I+ AI KVG LK +K L
Sbjct: 629 SLKVSTIYEHLAKLLEAGYEIDINQL-----VPKNKQEYIRLAIKKVG-DQSLKTLKENL 682
Query: 302 PDDITYAHIK 311
D+ +Y IK
Sbjct: 683 GDNYSYEEIK 692
>gi|425470694|ref|ZP_18849554.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9701]
gi|389883511|emb|CCI36062.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9701]
Length = 701
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 130/310 (41%), Gaps = 60/310 (19%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+++ Q L +G+GKD + WK L+ L+ L ET +D +R + ++Q + +
Sbjct: 443 ERITQYQHHLLSTYGIGKDKTLGEWKRLSRSLVQQNLLVET-EDNFRILKLNQHSWEVMR 501
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
R + A + +GD +N E+D+ L+ L + R
Sbjct: 502 KQR-------------SVFIAVPQKANGPILGD-------DNPNMVESDL-LFERLRQLR 540
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
KK+A G PY + D +++ +A ++P + + I GV V +GD + I
Sbjct: 541 KKIADSQGVPPYVIFHDSSLRLMAQSKPRSLGQFRQISGVVHSKVQQYGDIFIAAINDFC 600
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
Q SL P+ +++DGL+ ++IA R
Sbjct: 601 QD---SL-------------------------PSTQFLTLQYYQDGLNAEEIA----RKR 628
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNEL 301
+K T+ ++L + + G++I+ +L ++ I+ AI KVG LK +K L
Sbjct: 629 SLKVSTIYEHLAKLLEAGYEIDINQL-----VSKNKQEYIRLAIKKVG-DQSLKTLKENL 682
Query: 302 PDDITYAHIK 311
D+ +Y IK
Sbjct: 683 GDNYSYEEIK 692
>gi|351715433|gb|EHB18352.1| Werner syndrome ATP-dependent helicase [Heterocephalus glaber]
Length = 1411
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 139/350 (39%), Gaps = 60/350 (17%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQYLGSAR-- 64
F + L G GKD + +WWK + L++ G+L + + +++ +G+ +L A
Sbjct: 979 FRRHNLFGAGKDQTESWWKAFSRHLVTEGFLVDVPGGNKFVKICTLTAKGRNWLFKANAE 1038
Query: 65 ---------------------------------PDHQPPLLLTFNGE-----MVDAEEHE 86
P +Q P+ LT E M + +
Sbjct: 1039 SPQRLILQANEELWPKKFLLPSASTVSLGIEHHPSNQIPIELTAEKESNLEKMYSYKALD 1098
Query: 87 TISSNVGDLKSSATLENEGFSEADMQ-----LYHMLLEERKKLARVTGTAPYALCGDQTI 141
ISS + K S + +E A Q LY L+E R++ A P L ++ +
Sbjct: 1099 KISSGINIPKKSIMVSSEPVISAQEQKTQSVLYGKLVEARQRHANKMDVPPAILATNKIL 1158
Query: 142 KKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRK 201
+A RP+T + IDGV++ T LL+ I+H Q ++ D + +K
Sbjct: 1159 LDLAKMRPTTVENVKQIDGVSEGKA-TMLAPLLEVIKHFCQANSVQADLFSNTKSQEQKK 1217
Query: 202 LHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFD 261
+ N L + ++ E +S+ IA R P+ V +L +AV G+
Sbjct: 1218 SLEMKNENCSLPKCVAVTYSLFQEKKMSLDSIAK--DRILPL--TAVGMHLAQAVKAGYS 1273
Query: 262 INWTRLCDEVGLTDEIFSAIQEAISKVGCK---DKLKPIKNELPDDI-TY 307
++ R GLT EI I + I K+K I+ +P++I TY
Sbjct: 1274 LDMER----AGLTPEIQKIIADVIRNPPINSDMSKIKLIRMLVPENIDTY 1319
>gi|384047158|ref|YP_005495175.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium WSH-002]
gi|345444849|gb|AEN89866.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium WSH-002]
Length = 711
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 129/317 (40%), Gaps = 56/317 (17%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKVVD FDKL +G+ D S+ LIS ++ + + T+SV+ +GK L
Sbjct: 439 NKKVVDFGFDKLKTYGVMSDRSAKEVSDFIEYLISEQFIL-VGQGSFPTLSVAAKGKGVL 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
E V +E + V D +L+ L
Sbjct: 498 --------------LGTEKVMRKEQMEVKQIV----------------QDDELFAHLRSV 527
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA P+ + D T+ + P T + A + GV + +G+ I+
Sbjct: 528 RKQLADEADVPPFVIFSDDTLHDMCTKLPVTLEQFATVKGVGEQKQERYGERFTSEIKQF 587
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHE---DGLSIQKIANYP 237
+ EH R++ + + + +K + M +E G S+ +IA
Sbjct: 588 CE-----------EHPDRKREVSAPAPKKARAS-SKEGSHLMTYELFQQGKSLDEIAE-- 633
Query: 238 GRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPI 297
+ T+ ++L + E +I+W L+D+ I +A S VG +KLKPI
Sbjct: 634 --ERELSRITIENHLFKCAEEEKEIDWAPF-----LSDDDEQLILQAASSVG-DEKLKPI 685
Query: 298 KNELPDDITYAHIKACL 314
K ELP++ITY IK L
Sbjct: 686 KEELPENITYFMIKVAL 702
>gi|167945231|ref|ZP_02532305.1| ATP-dependent DNA helicase RecQ [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 327
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 22/180 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S+++ + +L ++G+GK+ S W+++ QL+ G L I+ Y + +++Q + L
Sbjct: 159 SERIRNFGHQQLSVYGIGKEFSGPEWRSIFRQLVVRGLLAVDIQG-YGGLRLTEQARPVL 217
Query: 61 -GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
G R D + + E I N + S AD++L+ L
Sbjct: 218 RGETRLD------------LRRERKPEKIKKNKVQRRFS--------DPADLELWEDLRT 257
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
RK+LA G PY + D T+ ++ + RP T A L NIDGV Q + +G+ L+ IR
Sbjct: 258 LRKELAEEQGVPPYVIFHDATLAEMVIWRPETPAALLNIDGVGQAKLEHYGEEFLELIRQ 317
>gi|434399695|ref|YP_007133699.1| ATP-dependent DNA helicase RecQ [Stanieria cyanosphaera PCC 7437]
gi|428270792|gb|AFZ36733.1| ATP-dependent DNA helicase RecQ [Stanieria cyanosphaera PCC 7437]
Length = 708
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 132/298 (44%), Gaps = 56/298 (18%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
+G+GKD + + WK L L++ G ++++ D YR + ++++ + L R
Sbjct: 453 YGIGKDKTKDEWKMLVRSLLNQGLVSQS-NDGYRILKLNKRSWEILRKQR---------- 501
Query: 75 FNGEMVDAEEHETISSNVGD-LKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
T+ V + + S +N + LY L + RK++A + PY
Sbjct: 502 ------------TVEIAVKNKIDSQTKPQNNPYQAEKEILYEQLKKLRKQIADLHSIPPY 549
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVG 193
+ D ++K +A +P T A+I GVN + + +G+ + IR Q+
Sbjct: 550 IIFADSSLKLMAQLQPQTLEDFASISGVNDYKLQQYGEQFISLIRTFCQQ---------- 599
Query: 194 EHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLL 253
++L V + +R+++T + H GL++++IA + V+ +
Sbjct: 600 ------QQLPVPLPSRSQMTTLQ------LHHRGLTVREIA--------AQRSLAVNTIN 639
Query: 254 EAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIK 311
+ +SE ++N +++ + E I + + KVG D LK +K L +D +Y IK
Sbjct: 640 QHLSELIELNQPVAINKL-VAPEKQKIITQILEKVG-DDSLKNLKETLGNDYSYEEIK 695
>gi|226356050|ref|YP_002785790.1| ATP-dependent DNA helicase [Deinococcus deserti VCD115]
gi|226318040|gb|ACO46036.1| putative ATP-dependent DNA helicase RecQ [Deinococcus deserti
VCD115]
Length = 731
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 17/180 (9%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV+ +L G+G++H +W+ + QL S GYLT S G
Sbjct: 445 TEKVLAMGHHQLPTFGVGREHDERFWRGVLRQLTSLGYLT----------SGEYHGLSAT 494
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
G AR +L ++ E+ V + SA S D L+ L +
Sbjct: 495 GKARA------ILKGEAKLALREDSLQPRERVRK-RDSARSGRTAVSTQDQPLFEALRQW 547
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R AR G PY + D T+K ++ RP + A L + GV Q + +GD +LQ +R L
Sbjct: 548 RLSKAREQGVPPYVIFTDATLKAVSETRPGSHAALGTVSGVGQRKLADYGDEVLQVVRDL 607
>gi|425466065|ref|ZP_18845368.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9809]
gi|389831578|emb|CCI25550.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9809]
Length = 703
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 129/310 (41%), Gaps = 60/310 (19%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+++ Q L +G+GKD + WK L+ L+ L ET +D +R + ++Q + +
Sbjct: 443 ERITQYQHHLLSTYGIGKDKTVEEWKRLSRSLVQQNILVET-EDDFRILKLNQHSWEVMR 501
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
R + A + S VGD +N E+D+ L+ L + R
Sbjct: 502 KQR-------------SVFIAVPQKANSQIVGD-------DNPNMVESDL-LFERLRQLR 540
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
KK+A G PY + D +++ +A ++P + I GV V +GD + I
Sbjct: 541 KKIADSQGVPPYVIFHDSSLRLMAQSKPRNLGQFRQISGVVHSKVQQYGDIFIAAINDFC 600
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
Q SL P+ +++DGL+ ++IA R
Sbjct: 601 QD---SL-------------------------PSTQFLTLQYYQDGLNAEEIA----RKR 628
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNEL 301
+K T+ ++L + + G++I+ +L ++ I+ I K+G LK +K L
Sbjct: 629 SLKVSTIYEHLAKLLEAGYEIDINQL-----VSKNKQEYIRLVIKKLG-DQSLKTLKENL 682
Query: 302 PDDITYAHIK 311
D+ +Y IK
Sbjct: 683 GDNYSYEEIK 692
>gi|56963874|ref|YP_175605.1| ATP-dependent DNA helicase RecS [Bacillus clausii KSM-K16]
gi|56910117|dbj|BAD64644.1| ATP-dependent DNA helicase RecS [Bacillus clausii KSM-K16]
Length = 697
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 128/314 (40%), Gaps = 55/314 (17%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+ DKL +GL KD S+ + L++ Y+ T Y T+ + +G L
Sbjct: 436 NKKIEQLGLDKLSTYGLMKDRSAKEVQAFIDFLLAEQYIGLTPAS-YPTIQLLPKGAAVL 494
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
GE + ET+ V D + ++ L E
Sbjct: 495 ---------------KGEGQVYQYKETVERTVSD---------------EDPIFAALRAE 524
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK LA G PY + D+T++++A P + LA I GV +H + +G+ L+T+
Sbjct: 525 RKALADEQGIPPYLIFSDKTLREMAAVAPQSLETLATISGVGEHKLSKYGEAFLKTLTQF 584
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
++ N L + T R ++ E K + E G + +IA G S
Sbjct: 585 EKQENAGLPLDKAQSTGHKR-------------VSREEVIKHF-EAGQAPAQIAATLGFS 630
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
EQT+V +L+ A L ++ E + I++AI +VG LKPIK
Sbjct: 631 ----EQTIVKHLIAAEKNNETTGVANLVEK-----EKAALIRQAIKEVGS-SYLKPIKEH 680
Query: 301 LPDDITYAHIKACL 314
D ++Y I+ +
Sbjct: 681 AGDGVSYTEIRIVI 694
>gi|425441134|ref|ZP_18821420.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9717]
gi|389718248|emb|CCH97777.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9717]
Length = 703
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 129/310 (41%), Gaps = 60/310 (19%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+++ Q L +G+GKD + WK L+ L+ L ET +D +R + ++Q + +
Sbjct: 443 ERITQYQHHLLSTYGIGKDKTVGEWKRLSRSLVQQNLLVET-EDNFRILKLNQHSWEVMR 501
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
R + A + VGD +N E+D+ L+ L + R
Sbjct: 502 KQR-------------SVFIAVPQKANGQIVGD-------DNPNTLESDL-LFDRLRQLR 540
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
KK+A G PY + D +++ +A ++P + I GV V +GD + I
Sbjct: 541 KKIADSQGVPPYVIFHDSSLRLMAQSKPRNLGQFRQISGVVHSKVQQYGDIFIAAINDFC 600
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
Q SL P+ +++DGL+ ++IA R
Sbjct: 601 QD---SL-------------------------PSTQFLTLQYYQDGLNAEEIA----RKR 628
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNEL 301
+K T+ ++L + + G++I+ +L ++ I+ AI KVG LK +K L
Sbjct: 629 SLKVSTIYEHLAKLLEAGYEIDINQL-----VSKNKQEYIRLAIKKVG-DQSLKTLKENL 682
Query: 302 PDDITYAHIK 311
D+ +Y IK
Sbjct: 683 GDNYSYEEIK 692
>gi|301789889|ref|XP_002930354.1| PREDICTED: Werner syndrome ATP-dependent helicase-like, partial
[Ailuropoda melanoleuca]
Length = 1120
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 147/367 (40%), Gaps = 75/367 (20%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQ 58
S+++ D Q+ K L G GKD + +WWK L++QL++ G+L E + R +++++G++
Sbjct: 672 SQRLAD-QYRKHSLFGSGKDQTESWWKALSHQLMTEGFLVEVPGKRRFVRICTLTEKGRR 730
Query: 59 YLGSARPDHQPPLLLTFNGE---------------------------------------- 78
+L A + L+L N E
Sbjct: 731 WLYEASTEFPKKLILQANDELCPRVFLLPSSKTIPPGIEQRSSNQVSTELTTEKKPNLEK 790
Query: 79 MVDAEEHETISSNVGDLKSSATLENEGFS-------------EADMQLYHMLLEERKKLA 125
M + + ISS K S + + G S E LY L+E R+K A
Sbjct: 791 MYSHKASDKISSGRNIPKKSIMVHSPGRSYKSSEPVISAQEQETQTVLYIELVEARQKQA 850
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
P L ++ + +A RP+T + IDGV++ LL+ I+H Q +
Sbjct: 851 NKMDIPPAILATNKILLDMAKMRPTTFENVKRIDGVSEGKA-NMLTPLLEVIKHFCQINS 909
Query: 186 LSLD----GKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
+ D K E R VV N L+ + ++ E +S+ IA R
Sbjct: 910 VQTDLFSRTKPQEE---QRNSMVVKNEACSLSQPVAITYYLFQEKKMSLISIAE--DRIM 964
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK---DKLKPIK 298
P+ V +L +AV G ++ R GLT E+ I + I +K+K I+
Sbjct: 965 PLT--AVGMHLTQAVKAGCPLDMER----AGLTPEVQKIIADVIRNPPINSDINKIKLIR 1018
Query: 299 NELPDDI 305
+P++I
Sbjct: 1019 KLVPENI 1025
>gi|281348780|gb|EFB24364.1| hypothetical protein PANDA_020784 [Ailuropoda melanoleuca]
Length = 1113
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 147/367 (40%), Gaps = 75/367 (20%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQ 58
S+++ D Q+ K L G GKD + +WWK L++QL++ G+L E + R +++++G++
Sbjct: 704 SQRLAD-QYRKHSLFGSGKDQTESWWKALSHQLMTEGFLVEVPGKRRFVRICTLTEKGRR 762
Query: 59 YLGSARPDHQPPLLLTFNGE---------------------------------------- 78
+L A + L+L N E
Sbjct: 763 WLYEASTEFPKKLILQANDELCPRVFLLPSSKTIPPGIEQRSSNQVSTELTTEKKPNLEK 822
Query: 79 MVDAEEHETISSNVGDLKSSATLENEGFS-------------EADMQLYHMLLEERKKLA 125
M + + ISS K S + + G S E LY L+E R+K A
Sbjct: 823 MYSHKASDKISSGRNIPKKSIMVHSPGRSYKSSEPVISAQEQETQTVLYIELVEARQKQA 882
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
P L ++ + +A RP+T + IDGV++ LL+ I+H Q +
Sbjct: 883 NKMDIPPAILATNKILLDMAKMRPTTFENVKRIDGVSEGKA-NMLTPLLEVIKHFCQINS 941
Query: 186 LSLD----GKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
+ D K E R VV N L+ + ++ E +S+ IA R
Sbjct: 942 VQTDLFSRTKPQEE---QRNSMVVKNEACSLSQPVAITYYLFQEKKMSLISIAE--DRIM 996
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK---DKLKPIK 298
P+ V +L +AV G ++ R GLT E+ I + I +K+K I+
Sbjct: 997 PLT--AVGMHLTQAVKAGCPLDMER----AGLTPEVQKIIADVIRNPPINSDINKIKLIR 1050
Query: 299 NELPDDI 305
+P++I
Sbjct: 1051 KLVPENI 1057
>gi|157134860|ref|XP_001656478.1| werner syndrome helicase [Aedes aegypti]
gi|108881338|gb|EAT45563.1| AAEL003152-PA [Aedes aegypti]
Length = 968
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 143/368 (38%), Gaps = 55/368 (14%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTET-IKDVYRTVSV------SQQGKQYLGSARPD 66
LHG+GK WWK LA L G+L +T + + + +V + K++L A P+
Sbjct: 472 LHGIGKTKDDEWWKALAVLLEREGFLAKTKVPNTFNKFAVIYKIGSTPLAKKWL--ATPN 529
Query: 67 HQPPLLLTFNGEMVDA------------------------EEHETISSNVGDLKSSATLE 102
+ LL+ EM + + T + SS LE
Sbjct: 530 RK--LLMKPTTEMFKSIRLVSTEGQVRTQPLFDTGSDFQTQSKTTFPPQLQAPGSSRLLE 587
Query: 103 NEGFSEADMQ-LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPST--KARLANID 159
+ +Q L LL++R +LA PY + +Q + ++A RP + + A +D
Sbjct: 588 PIAQKQDIVQELVKTLLKKRSELATAYECMPYMIASNQALHQMATIRPLNLDEMKRAKLD 647
Query: 160 GVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEA 219
G + + G L I+ L + + T+ L T+TK +
Sbjct: 648 GFSDIKIQKFGKEFLVCIQQ-----KLKYIPETSQPNTPTQVLQQHSLTKTKFSSTHQTT 702
Query: 220 WKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDI---NWTRLCDEVGLTDE 276
W +W E G SI IA + + E TV ++L EA+ F + +R+ + L D
Sbjct: 703 WNLWLE-GRSISDIAKFRN----LAEGTVTNHLAEAIKHWFPFGPKDLSRMGIDQRLYDH 757
Query: 277 IFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKACLVMENCGISPEVIPPSQKKGNTD 336
I S + ++ GC KL +KN +T+ IK L E + N
Sbjct: 758 IKSNLPPSLE--GC--KLTDVKNRCLPHVTFDQIKIVLSHVQVRSHLEALNVPANDNNAH 813
Query: 337 ELPSKASE 344
E P K E
Sbjct: 814 EEPQKPPE 821
>gi|146298045|ref|YP_001192636.1| ATP-dependent DNA helicase RecQ [Flavobacterium johnsoniae UW101]
gi|146152463|gb|ABQ03317.1| ATP-dependent DNA helicase, RecQ family [Flavobacterium johnsoniae
UW101]
Length = 731
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 35/259 (13%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
G G DH +W L Q++ GYL++ I + Y + ++Q+G ++ +P +++
Sbjct: 461 GSGSDHDEKYWMALLRQVLVTGYLSKDI-ETYGVIKITQEGLDFI--KKP---VSFMMSE 514
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
+ E +A++ ++ KSS T AD L ML E RKK+A+ G P+ +
Sbjct: 515 DHEYTEADDETIVTGG----KSSGT--------ADEVLTGMLRELRKKVAKKLGVPPFVV 562
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI-RHLSQKLNLSLDGKVGE 194
D +++ +AL P T L NI GV + +G + I R++ + D V +
Sbjct: 563 FQDPSLEDMALKYPITLQELYNIHGVGEGKAKKYGSEFVALISRYVEDNDIIRPDDLVVK 622
Query: 195 HTAF--TRKLHVVVNTRTKLTPAKYEAWKMWHEDGL--SIQKIANYPGRSAPIK------ 244
T KL+++ N KL + + K D L +++I Y G IK
Sbjct: 623 STGVNSANKLYIIQNIDRKLPLSDIASAKGLTMDALIKEMEQIV-YSGTKLNIKYWLDDI 681
Query: 245 -----EQTVVDYLLEAVSE 258
++ + DY +E+ S+
Sbjct: 682 LDDDQQEEIHDYFMESESD 700
>gi|374622621|ref|ZP_09695144.1| ATP-dependent DNA helicase RecQ [Ectothiorhodospira sp. PHS-1]
gi|373941745|gb|EHQ52290.1| ATP-dependent DNA helicase RecQ [Ectothiorhodospira sp. PHS-1]
Length = 603
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 21/171 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG-SARPDHQ 68
D+L + G+G+D + N W+ + QLI+ G LT V + G +L S RP
Sbjct: 448 DRLSVFGIGRDLTVNEWRGIFRQLIARGLLT---------VDLEGHGGLHLNPSCRP--- 495
Query: 69 PPLLLTFNGEMVDAEEHETISSNVG-DLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
GE+ ET+ + + + + S L+ + S D +L+ L R++LA
Sbjct: 496 -----VLRGEVPLMLRKETVPARINREPRRSRALQLD--SPEDQRLFEALRGCRRRLADE 548
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
G PY + D T++++A RP + A +A I GV + + ++G L+ IR
Sbjct: 549 QGVPPYMVFNDATLQEMAQVRPHSLAAMAGISGVGEKKLESYGLEFLEVIR 599
>gi|315635218|ref|ZP_07890495.1| ATP-dependent helicase RecQ [Aggregatibacter segnis ATCC 33393]
gi|315475964|gb|EFU66719.1| ATP-dependent helicase RecQ [Aggregatibacter segnis ATCC 33393]
Length = 629
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 84/178 (47%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D Q D+L ++G+GK+HS+ +W+++ QLI G + + I + T+ +++ K
Sbjct: 462 NQKIRDQQHDQLSVYGIGKEHSTEYWQSVLRQLIHLGLVRQMIGEYGNTLQLTENAK--- 518
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GEM E + + + ++A + D L+ L
Sbjct: 519 ---------PIL---RGEM----PLELATPRLSSIVTTAMMHKSAVGSYDKDLFARLRFL 562
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A +P + + I+GV + G L IR
Sbjct: 563 RKQIADKENIPPYIVFNDATLQEMAQYQPVSNIEMLQINGVGTIKLERFGQAFLSLIR 620
>gi|295704335|ref|YP_003597410.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium DSM 319]
gi|294801994|gb|ADF39060.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium DSM 319]
Length = 711
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 130/317 (41%), Gaps = 56/317 (17%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKVVD FDKL +G+ D S+ LIS ++ + + T+SV+ +GK L
Sbjct: 439 NKKVVDFGFDKLKTYGVMSDRSAKEVSDFIEYLISEQFIL-VGQGSFPTLSVAAKGKGVL 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
E V +E + V D +L+ L
Sbjct: 498 --------------LGTEKVMRKEQMEVKQIV----------------QDDELFAHLRSV 527
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA G P+ + D T+ + P + A + GV + +G+ I+
Sbjct: 528 RKQLADEAGVPPFVIFSDDTLHDMCAKLPVKLEQFATVKGVGEQKQERYGERFTTEIKQF 587
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHE---DGLSIQKIANYP 237
+ E+ R++ + + + +K + M +E G S+ +IA
Sbjct: 588 CE-----------ENPERKREVSAPAPKKARAS-SKEGSHLMTYELFQQGKSLDEIAA-- 633
Query: 238 GRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPI 297
+ T+ ++L + E +I+W+ L++E I EA S VG +KLKPI
Sbjct: 634 --ERELSRITIENHLFKCAEEEKEIDWSPF-----LSEEDEQLILEAASSVG-DEKLKPI 685
Query: 298 KNELPDDITYAHIKACL 314
K ELP++ITY IK L
Sbjct: 686 KEELPENITYFMIKVAL 702
>gi|120434956|ref|YP_860642.1| ATP-dependent DNA helicase RecQ [Gramella forsetii KT0803]
gi|117577106|emb|CAL65575.1| ATP-dependent DNA helicase RecQ [Gramella forsetii KT0803]
Length = 732
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 112/263 (42%), Gaps = 33/263 (12%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
L G G SN+W L Q + G+L + I + Y V ++++G+ YL P +
Sbjct: 460 LFGKGSHQESNYWMALTRQALVSGFLKKDI-ETYGVVKITEKGRNYL------QNPVSYM 512
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
+ +A E + T ++G + D QL ML E RKK+A+ P+
Sbjct: 513 MTEDHIYNAATEEAV-----------TKADKGGASVDAQLVKMLKELRKKVAKKKDLPPF 561
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI-RHLSQKLNLSLDGKV 192
+ D +++ +AL P L+NI GV + +G+ ++ I R++ + D V
Sbjct: 562 VIFQDPSLEDMALKYPVNIDELSNIHGVGEGKAKKYGNEFVELIARYVEDNDIVRPDDFV 621
Query: 193 GEHTAF--TRKLHVVVNTRTKLTPAKYEAWK-MWHEDGLSIQKIANYPGRSAPI------ 243
+ T + KL+++ N KL + K M D + + Y G I
Sbjct: 622 VKSTGANSSLKLYIIQNVDRKLPLTDIASAKGMSMPDFVKEMEAIVYSGTKLNIDYWLDD 681
Query: 244 -----KEQTVVDYLLEAVSEGFD 261
+++ + DY LEA ++ D
Sbjct: 682 ILDEDQQEEIHDYFLEAETDKID 704
>gi|150392373|ref|YP_001322422.1| ATP-dependent DNA helicase RecQ [Alkaliphilus metalliredigens QYMF]
gi|149952235|gb|ABR50763.1| ATP-dependent DNA helicase RecQ [Alkaliphilus metalliredigens QYMF]
Length = 726
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 137/321 (42%), Gaps = 41/321 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK++ DK+ + + K++S + + L++ GY+ T D + + ++ Q ++ L
Sbjct: 438 NKKILQLGLDKVSTYNIMKNYSEQGVREIIMTLVARGYIHVT-TDKFPVLKLTAQCREIL 496
Query: 61 -GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
G + H+ L+ E I S + S ++ F E +L L E
Sbjct: 497 QGDVKIHHKKELV-------------EAIGSKDEKERKSKKAVSDHFDE---ELLSQLKE 540
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
R +A P+ + D+T+K++A P TK IDGV +G + +
Sbjct: 541 LRSTIASEKRVPPFMIFHDRTLKEMAACFPRTKEVFLTIDGVGMKKYENYGAQFMDLVEA 600
Query: 180 LSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPA-----KYEAWKMWHEDGLSIQKIA 234
++ K+ K+ VVNT + +Y+ + +GLS+ KIA
Sbjct: 601 ------YCIENKI---QGTESKVDEVVNTDESNSQVGAGLDRYQITYDCYLEGLSLPKIA 651
Query: 235 NYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKL 294
+ +K T++++L G +++W R D+ I I+E +G KL
Sbjct: 652 H----ERNLKGTTIIEHLKRCEDNGQEVDWGRFIDDPNKERAILDVIEE----IGIM-KL 702
Query: 295 KPIKNELPDDITYAHIKACLV 315
KPIK L +++Y I+ ++
Sbjct: 703 KPIKEALSPEVSYEDIRLVIM 723
>gi|168210443|ref|ZP_02636068.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens B str.
ATCC 3626]
gi|170711523|gb|EDT23705.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens B str.
ATCC 3626]
Length = 724
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 141/339 (41%), Gaps = 93/339 (27%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK++D D+L +G+ KD+S K LIS+ Y+ Y+
Sbjct: 437 NKKIIDLGLDQLSTYGIMKDYSKEGLKDFINTLISHRYI------------------DYI 478
Query: 61 GS---ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
G R + +L N +++ E+ +K+ + +N +L+ +L
Sbjct: 479 GEYPVVRLNQSSIDILKGNEKVMFKEK----------IKAKSVSKNN-------ELFDLL 521
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R+++A G PY + GD T+K++++ P +++L+ I GV + ++ +G+ L I
Sbjct: 522 RSLRREIALEEGVPPYIVFGDNTLKEMSVRIPVNESQLSEISGVGEKKILKYGEMFLNVI 581
Query: 178 RHLSQKLNLSL--------------------DGKVGEHTAFTRKLHVVVNTRTKLTPAKY 217
+ + N+ + +GK G+ +F + ++ T AK
Sbjct: 582 KEYVKVNNIEVKWESGLKINKDELEEKFKKSNGKDGKKKSFEITIDMLREGDKFHTIAK- 640
Query: 218 EAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEI 277
E LSI + ++ + YL E F+I++ D +
Sbjct: 641 -------ERELSITTVLSH-----------IQQYLEEGNKIDFEIDF----------DSL 672
Query: 278 FSAIQE-----AISKVGCKDKLKPIKNELPDDITYAHIK 311
FS +E AI KVG KLKPIK L +D++Y I+
Sbjct: 673 FSKREEELVLDAIDKVGY-SKLKPIKENLEEDVSYEKIR 710
>gi|379729697|ref|YP_005321893.1| ATP-dependent DNA helicase RecQ [Saprospira grandis str. Lewin]
gi|378575308|gb|AFC24309.1| ATP-dependent DNA helicase RecQ [Saprospira grandis str. Lewin]
Length = 737
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 27/191 (14%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++ ++D +++K L G GKD ++W ++ Q + YL + I+D Y + V++ G ++L
Sbjct: 450 TQSILDFKYEKHELFGKGKDKDRHYWNSVLRQGLLNDYLKKDIED-YGILRVAEAGHEFL 508
Query: 61 GSARPDHQPPLLL-----TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYH 115
QP L F EM D EE + +S+TL D QL
Sbjct: 509 A------QPKLFEISLNHNFAQEMQDMEEER-------EQNASSTL--------DPQLLK 547
Query: 116 MLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQ 175
+LL+ RK++AR P+ + +++++A P T + NI GV++ +G + L
Sbjct: 548 ILLDLRKQVARKKNVPPFVVFQKVSLEEMATQYPFTIEEMKNISGVSEGKARRYGRNFLA 607
Query: 176 TIRHLSQKLNL 186
TI+ ++ N+
Sbjct: 608 TIKDYVEENNI 618
>gi|15887415|ref|NP_353096.1| ATP-dependent DNA helicase [Agrobacterium fabrum str. C58]
gi|15154924|gb|AAK85881.1| ATP-dependent DNA helicase [Agrobacterium fabrum str. C58]
Length = 602
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D + +G+GK+H + W+ + QL++ L E + +S+S+ G+++L +P
Sbjct: 445 DSITTYGIGKEHDNRTWRAILRQLVAL-RLIEVDLSGHGGLSISENGRRFL-----REKP 498
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
L+L + + T + S+A EAD L+ L +R ++AR
Sbjct: 499 SLMLR-----IPSAPRSTRRDAPRNAMSTA------LPEADRGLFEALRAKRMEIARAQN 547
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D+T+ ++A ARP++ +A I GV Q + +G L TI
Sbjct: 548 VPPYVIFHDKTLIELAAARPASAKEMAQIAGVGQTKLERYGPAFLDTI 595
>gi|182624514|ref|ZP_02952297.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens D str.
JGS1721]
gi|177910322|gb|EDT72703.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens D str.
JGS1721]
Length = 724
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/339 (22%), Positives = 141/339 (41%), Gaps = 93/339 (27%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+++ D+L +G+ KD+S K LIS+ Y+ Y+
Sbjct: 437 NKKIIELGLDQLSTYGIMKDYSKEGLKDFINTLISHRYI------------------DYI 478
Query: 61 GS---ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
G R + +L N +++ E+ +K+ +N +L+ +L
Sbjct: 479 GEYPVVRLNQSSIDILKGNEKVMFKEK----------IKAKRVSKNN-------ELFDLL 521
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R+++A G PY + GD T+K++++ P +++L+ I GV + ++ +G+ L I
Sbjct: 522 RSLRREIASEEGVPPYIVFGDNTLKEMSVRIPVNESQLSEISGVGEKKILKYGEMFLNVI 581
Query: 178 RHLSQKLNLSL--------------------DGKVGEHTAFTRKLHVVVNTRTKLTPAKY 217
+ + N+ + +GK G+ +F ++++ T AK
Sbjct: 582 KEYVKVNNIEVKWESGLKINKDELEEKFKKSNGKDGKKKSFEITIYMLREGEKFHTIAK- 640
Query: 218 EAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEI 277
E LSI + ++ + YL E F+I++ D +
Sbjct: 641 -------ERELSITTVLSH-----------IQQYLEEGNKIDFEIDF----------DSL 672
Query: 278 FSAIQE-----AISKVGCKDKLKPIKNELPDDITYAHIK 311
FS +E AI KVG KLKPIK L +D++Y I+
Sbjct: 673 FSKREEELVLDAIDKVGY-SKLKPIKENLEEDVSYEKIR 710
>gi|403386480|ref|ZP_10928537.1| ATP-dependent DNA helicase RecQ [Clostridium sp. JC122]
Length = 715
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 144/317 (45%), Gaps = 49/317 (15%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV+ DKL +G+ + S ++ KT + LIS+ YL E+++ + TV ++Q+
Sbjct: 438 NKKVLRLGLDKLNTYGIMSNVSKDYLKTFIHTLISHRYL-ESLQGNFPTVGLTQKS---- 492
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L EE+ V N+ + +A+ +L +L
Sbjct: 493 --------IPIL--------KREENVIFKEFV----------NKEYVDANNELLSILKSL 526
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R+ +A PY + D T+K++++ P K L +I G+ +H +G L I
Sbjct: 527 RRDIANDENIPPYVVFSDSTLKELSIRLPINKEELLDISGIGEHKCEKYGTLFLNIINAY 586
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHE---DGLSIQKIANYP 237
+ N++L+ FT+ + ++++K + K + ++ + + SI+ +
Sbjct: 587 VNENNITLN------FVFTKTKN---DSQSKTSSHKGKTIEVTMDLLSNNPSIENVCKQR 637
Query: 238 GRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPI 297
+ + YL E + ++++ L DE +E I +AI +VG +++LKPI
Sbjct: 638 NLQIGTILEHIKKYLEEHENTNLPLDFSNLYDE---NNE--KEILDAIKQVG-RNRLKPI 691
Query: 298 KNELPDDITYAHIKACL 314
K + +ITY IK +
Sbjct: 692 KEIVNPNITYDEIKVVI 708
>gi|347751808|ref|YP_004859373.1| ATP-dependent DNA helicase RecQ [Bacillus coagulans 36D1]
gi|347584326|gb|AEP00593.1| ATP-dependent DNA helicase RecQ [Bacillus coagulans 36D1]
Length = 724
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 138/314 (43%), Gaps = 50/314 (15%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKD-VYRTVSVSQQGKQYL 60
+K+ FDKL G+ KD + L L + G+L KD Y + ++++ + L
Sbjct: 440 QKIRQFGFDKLSTFGIMKDKTQKEVAELIDFLTADGFLRA--KDGTYPVLMLTKKAVEVL 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S + F E V A++ I+S D L+ L
Sbjct: 498 LSKKQ--------VFRKESVRAQQ---IAS-------------------DNLLFEKLRTL 527
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK++A PY + DQ++++++ P T+ + GV + V + + ++ IR
Sbjct: 528 RKEIADREKIPPYIVFSDQSLREMSARMPITREAFLQVKGVGERKVEQYAELFMRVIRTY 587
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
++ + + + T+K+H ++ + +++ E G +I++IA G S
Sbjct: 588 MEEEGIQAQAQ-PKALPHTKKVHEDGKEKS-----HHVTYRLLQE-GKTIREIAEIRGMS 640
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
E+T+ ++++ EGF + W+R E I +AI++ G +L PIK
Sbjct: 641 ----ERTIETHVIKCSDEGFPVEWSRFIPE-----RYRERIADAINRAGS-GRLTPIKEL 690
Query: 301 LPDDITYAHIKACL 314
LPD+++Y I+A L
Sbjct: 691 LPDEVSYFMIRAFL 704
>gi|431795569|ref|YP_007222473.1| ATP-dependent DNA helicase RecQ [Echinicola vietnamensis DSM 17526]
gi|430786334|gb|AGA76463.1| ATP-dependent DNA helicase RecQ [Echinicola vietnamensis DSM 17526]
Length = 725
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 97/196 (49%), Gaps = 27/196 (13%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D L + G GK+ + +W+++ Q + +G L + I++ Y + +S+ + +L +
Sbjct: 447 DGLSVFGKGKEENERYWRSVIRQTMIHGLLEKDIEN-YGVIKLSKTSEDFL-------KN 498
Query: 70 PLLLTFN-----GEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKL 124
P +TF EM++ +E E I++ N+ + E +L+ +L ERKK+
Sbjct: 499 PHEITFTKDHDFDEMIENDEAEEIANT-----------NKAYDE---KLFELLKVERKKV 544
Query: 125 ARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKL 184
A+ G PY + D +++++A P+++ LA ++GV V G L+ I + ++
Sbjct: 545 AKSKGLPPYVIFQDPSLEEMATVYPTSREELAQVNGVGMGKVTKFGAPFLKLITNYVEEN 604
Query: 185 NLSLDGKVGEHTAFTR 200
++ V TA TR
Sbjct: 605 DIITASDVVVKTAGTR 620
>gi|335032790|ref|ZP_08526162.1| ATP-dependent DNA helicase [Agrobacterium sp. ATCC 31749]
gi|333795466|gb|EGL66791.1| ATP-dependent DNA helicase [Agrobacterium sp. ATCC 31749]
Length = 602
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D + +G+GK+H + W+ + QL++ L E + +S+S+ G+++L +P
Sbjct: 445 DSITTYGIGKEHDNRTWRAILRQLVAL-RLIEVDLTGHGGLSISENGRRFL-----REKP 498
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
L+L S D +AT + EAD L+ L +R ++AR
Sbjct: 499 SLMLRIP---------SAPRSTRRDAPRNAT--STALPEADRGLFEALRAKRMEIARAQN 547
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D+T+ ++A ARP++ +A I GV + + +G L TI
Sbjct: 548 VPPYVIFHDKTLIELAAARPASAKEMAQIAGVGETKLERYGPAFLDTI 595
>gi|254293277|ref|YP_003059300.1| ATP-dependent DNA helicase RecQ [Hirschia baltica ATCC 49814]
gi|254041808|gb|ACT58603.1| ATP-dependent DNA helicase RecQ [Hirschia baltica ATCC 49814]
Length = 629
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 14/164 (8%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+K +D +L +G+G + W+++ QL+ GYL E D T+
Sbjct: 459 AKDQIDEDMSQLTTYGVGSELGPVGWRSVIDQLLFDGYLAEDDNDNRPTLYA-------- 510
Query: 61 GSARPDHQPPLLLTFNGEMVDA-EEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
PD + L L F G++ A E+ T KSS T +G S + L+ L +
Sbjct: 511 ----PDKEMTLAL-FGGDVTIAMRENPTKIRKREKTKSSGTNIRDGLSTDQVDLFEDLRD 565
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQ 163
R++LA TG PY + D+T+++IA+A+P +K L I GV +
Sbjct: 566 WRRELASDTGVPPYVIFNDKTLREIAIAKPLSKYDLLRIAGVGE 609
>gi|251778058|ref|ZP_04820978.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243082373|gb|EES48263.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 812
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 32/213 (15%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV+ F++L +G+ KD+S++ K LIS+ Y++ + Y + ++Q+ L
Sbjct: 438 NKKVIQFNFNELSTYGIMKDYSNDELKNFINTLISHRYIS-VVNGTYPVLGLNQRSMSVL 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S + F ++ + E D +LY +L E
Sbjct: 497 KSEEK-------VVFKEFKIEKKARE-----------------------DNELYSILKEI 526
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+++ G PY + GD T+K++ + P K ++ NI GV + +G+ I+
Sbjct: 527 RKEISVENGVPPYVIFGDATLKEMTVKYPVNKEQMLNISGVGEIKYKKYGEIFENEIKKF 586
Query: 181 SQKLNLSLDGKVGEHTAF-TRKLHVVVNTRTKL 212
++ N+ + ++ E +H+ +NT +L
Sbjct: 587 VKENNIEISNEINEKEEVKMESIHLDINTNEEL 619
>gi|443668675|ref|ZP_21134223.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa DIANCHI905]
gi|159029588|emb|CAO90247.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330750|gb|ELS45444.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa DIANCHI905]
Length = 701
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 132/310 (42%), Gaps = 60/310 (19%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+++ Q L +G+GKD + WK L+ L+ L ET +D +R + ++Q + +
Sbjct: 443 ERITQYQHHLLSTYGIGKDKTIGEWKRLSRSLVQQNLLIET-EDNFRILKLNQHSWEVMR 501
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
R + A + +GD +N E+D+ L+ L + R
Sbjct: 502 KQR-------------SVFIAVPQKANGPILGD-------DNPNTMESDL-LFDRLRQLR 540
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
KK+A G PY + D +++ +A ++P + + I GV Q V +GD + I
Sbjct: 541 KKIADSQGVPPYVIFHDSSLRLMAQSKPRSLEQFRQISGVVQSKVQQYGDIFIAAINDFC 600
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
Q SL P+ +++DGL+ ++IA R
Sbjct: 601 QD---SL-------------------------PSTQFLTLQYYQDGLNAEEIA----RKR 628
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNEL 301
+K T+ ++L + + G++I+ +L V + + + AI KVG + LK +K L
Sbjct: 629 SLKVSTIYEHLAKLLEAGYEIDINQL---VPKNKQEYICL--AIKKVGVQS-LKTLKENL 682
Query: 302 PDDITYAHIK 311
D+ +Y IK
Sbjct: 683 GDNYSYEEIK 692
>gi|182419572|ref|ZP_02950820.1| ATP-dependent DNA helicase RecQ [Clostridium butyricum 5521]
gi|237668816|ref|ZP_04528800.1| ATP-dependent DNA helicase RecQ [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182376607|gb|EDT74182.1| ATP-dependent DNA helicase RecQ [Clostridium butyricum 5521]
gi|237657164|gb|EEP54720.1| ATP-dependent DNA helicase RecQ [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 816
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 36/229 (15%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV+ +F++L +G+ K+ S++ KT L+S GY+ ++ Y ++++ ++ L
Sbjct: 439 NKKVLQFKFNELSTYGIMKEFSADELKTFINTLVSQGYI-RVVEGTYPILALNSMSRKIL 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ +L F H+ + N NE L+ +L E
Sbjct: 498 ----VGEEKVMLKEFAA-------HKKVREN-----------NE--------LFEILKEL 527
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK++A PY + GD T+K++++ P K + NI GV + +G+ TIR
Sbjct: 528 RKEIAHENNVPPYVIFGDVTLKEMSVKYPVYKEAMLNITGVGELKYSKYGELFENTIRKY 587
Query: 181 SQKLNLSLDGKVGEHTAFTRK----LHVVVNTRTKLTPAKYEAWKMWHE 225
S+ N+ + G+ G T L + + T KL +EA K W E
Sbjct: 588 SEDNNIKISGE-GTLEIITSNNDNDLKLEIKTDDKLYNLLFEARKKWAE 635
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 103/214 (48%), Gaps = 19/214 (8%)
Query: 108 EADMQLYHMLLEERKKLARVTGTA-PYALCGDQTIKKIALARPSTKARLANIDGVNQHLV 166
+ D +LY++L E RKK A A P ++ +K+I+ P + L +I G +
Sbjct: 617 KTDDKLYNLLFEARKKWAEKEKNAYPQSIMHMNILKEISGRYPVSIEELKDISGFGPKKI 676
Query: 167 ITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTR-KLHVVVNTRTKLTPAKYEAWKMWHE 225
+GD +++ + + + N+ EH + K V+++ T+ + A M E
Sbjct: 677 EAYGDEIIEIVNNYILENNI-------EHVWIQKNKRKVIIDGETRNSDQI--AIDMLKE 727
Query: 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
+ ++I +++ + T++ Y+ E + E +I + + E +E SAI AI
Sbjct: 728 N-VNIHEVS----EKLELSVSTILGYVSEYIKEFGEIKFN-INFEEFYNEEEESAILNAI 781
Query: 286 SKVGCKDKLKPIKNELPDDITYAHIKACLVMENC 319
++VG +K+ +K LP Y I+A +++++C
Sbjct: 782 NEVGF-EKISDLKKALPKYTKYESIRA-VILKHC 813
>gi|392396238|ref|YP_006432839.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
gi|390527316|gb|AFM03046.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
Length = 725
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 141/323 (43%), Gaps = 50/323 (15%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
++V++ +DK+ +G G D S+ W+ Q ++ G L E D T+ +++ + L
Sbjct: 435 QEVLEKGYDKIKTYGAGSDISAGIWQQHLLQFLNMG-LIEIAYDQNNTLKLTEAARAVL- 492
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSE---ADMQLYHMLL 118
F + VD + E KS E E F+ QLY L
Sbjct: 493 -------------FQKKKVDLVQFE--------FKSKKEREKE-FARPKSKKAQLYDGLF 530
Query: 119 EE----RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLL 174
EE R+++A G APY + GD T+K + P+ ++ + GV + G L
Sbjct: 531 EELRQLRRQIADSKGIAPYMVFGDATLKDMVDKAPTHLFQMRQVSGVGDLKLREFGQIFL 590
Query: 175 QTI-RHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKI 233
I ++ K N +D H +K ++ +T A+ W+++ +G S+++I
Sbjct: 591 DAILNYIKTKGNTRVDA----HLEKAKK------EKSSVTSAQV-TWQLFKNEGKSLKQI 639
Query: 234 ANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLC--DEVGLTDEIFSAIQEAISKVGCK 291
A + E TV +L +A +GF+I+W +E+ + + +++ I K
Sbjct: 640 AE----ERNMTEGTVWGHLYQASEDGFEIDWLEFVSLEEIKIIEAAIKTVRKRIPK-DET 694
Query: 292 DKLKPIKNELPDDITYAHIKACL 314
++K + L + ++Y I++ +
Sbjct: 695 FRMKFVFEYLEEKMSYVKIRSAV 717
>gi|148227808|ref|NP_001081838.1| Werner syndrome ATP-dependent helicase homolog [Xenopus laevis]
gi|29428101|sp|O93530.1|WRN_XENLA RecName: Full=Werner syndrome ATP-dependent helicase homolog;
AltName: Full=Exonuclease WRN; AltName:
Full=Focus-forming activity 1; Short=FFA-1
gi|3420291|gb|AAC63512.1| focus forming activity 1 [Xenopus laevis]
Length = 1436
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 104/417 (24%), Positives = 167/417 (40%), Gaps = 90/417 (21%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDV-YRTV-SVSQQGKQ 58
S++V D +F L GKD + +WK LA QLI+ GYL E+ + T+ ++ +G
Sbjct: 934 SQRVPD-RFRNHSLFSSGKDQTEAFWKVLARQLITEGYLQESSGQTKFSTICGLTSKGSN 992
Query: 59 YLGSARPDHQPPLLLTFNGEM--------------------------------------- 79
+L A + P LLL N E+
Sbjct: 993 WLIKANNEQCPSLLLPSNNELCLQRTRVSNFSSAQAHSSMVPHASSNTRSSMPKAGPEKM 1052
Query: 80 -----VDAEEHETISSNVGDLKSSATLENE-----------GFSEADMQ--LYHMLLEER 121
+E E +S G KSS L+ E ++Q LY L+ R
Sbjct: 1053 ELKDKFSYQEAERLSKAAGVSKSSFKLQTPCKLSRPPEPEVSPRERELQTTLYGRLVVAR 1112
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
+K+A P L ++ + +A RP+T + +DGV++ LL+ ++
Sbjct: 1113 QKIASERDILPAVLATNKVLVDMAKLRPTTSENMKKLDGVSEAKSAMLAP-LLEVVKEFC 1171
Query: 182 QKLNLSLD---GKV--GEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANY 236
+L +D G V E T FT + R L ++ ++ ++ E LS++KIA+
Sbjct: 1172 IANSLKVDVFSGSVSQSESTFFTPREQ----ERISLPESQRMSYSLFQEQNLSLKKIADV 1227
Query: 237 PGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKL-- 294
S + V +L +A+ G+ + R GLT E+ I AI K L
Sbjct: 1228 RCLSMAV----VGMHLWQALKAGYSFDVQR----AGLTPEMKKLITYAIKKPPINSDLSS 1279
Query: 295 -KPIKNELPDDITYAHIKACL-VMENCGIS-----PEVIPPSQKK-GNTDELPSKAS 343
K I+ +P +I I+ + ++E G S PE P+QK T+E P S
Sbjct: 1280 FKAIREYVPANIDGYPIRMVISLLEKEGSSGAQGQPEF--PTQKTLIQTEENPKNVS 1334
>gi|312129258|ref|YP_003996598.1| ATP-dependent DNA helicase recq [Leadbetterella byssophila DSM
17132]
gi|311905804|gb|ADQ16245.1| ATP-dependent DNA helicase RecQ [Leadbetterella byssophila DSM
17132]
Length = 773
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 18 GKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTFNG 77
G+ +S+ W ++ QL+ +GYL + I D Y V VSQ+G YL P +TF+
Sbjct: 496 GRISASDKWVSIIRQLMVFGYLEKDI-DNYGVVKVSQKGMNYLND-------PYSITFHE 547
Query: 78 EMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCG 137
D + ET S DL+ + G AD L +L RKK+A+ PY +
Sbjct: 548 ---DHDLDETEGSGEDDLQQTPG-SASGSGAADQALLELLKSLRKKIAKEKNVPPYVVFQ 603
Query: 138 DQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
D +++++A PS LA ++GV V G L I
Sbjct: 604 DPSLEEMATTYPSNANELAQVNGVGMGKVQKFGKPFLDLI 643
>gi|187935607|ref|YP_001886536.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum B str.
Eklund 17B]
gi|187723760|gb|ACD24981.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum B str.
Eklund 17B]
Length = 812
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 32/213 (15%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV+ F++L +G+ KD+S++ K LIS+ Y++ + Y + ++Q+ L
Sbjct: 438 NKKVIQFNFNELSTYGIMKDYSNDELKNFINTLISHRYIS-VVNGTYPVLGLNQRSMSVL 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S + F ++ + E D +LY +L E
Sbjct: 497 KSEEK-------VVFKEFKIEKKARE-----------------------DNELYAILKEI 526
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+++ G PY + GD T+K++ + P K ++ NI GV + +G+ I+
Sbjct: 527 RKEISTENGVPPYVIFGDATLKEMTVKYPVNKEQMLNISGVGEIKYKKYGEIFENEIKKF 586
Query: 181 SQKLNLSLDGKVGEHTAF-TRKLHVVVNTRTKL 212
++ N+ + ++ E +H+ +NT +L
Sbjct: 587 VKENNIEISNEIDEKEEVKMESIHLDINTNEEL 619
>gi|417858428|ref|ZP_12503485.1| ATP-dependent DNA helicase [Agrobacterium tumefaciens F2]
gi|338824432|gb|EGP58399.1| ATP-dependent DNA helicase [Agrobacterium tumefaciens F2]
Length = 602
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D++ +G+GK+H + W+ + Q+++ L E + +S+S++G+++L +P
Sbjct: 445 DRITTYGIGKEHDNRTWRAILRQMVAL-RLIEVDLSGHGGLSISEEGRRFL-----REKP 498
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
L+L + T +SA L EAD L+ L +R ++AR
Sbjct: 499 SLMLRIPSAPRSTRQQATRKP------ASAVL-----PEADRSLFEALRSKRMEIARAQN 547
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D+T+ ++A ARP++ +A I GV + +G L I
Sbjct: 548 VPPYVIFHDKTLVELAAARPASAREMAQIPGVGDTKLERYGPAFLAAI 595
>gi|422872916|ref|ZP_16919401.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens F262]
gi|380306174|gb|EIA18448.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens F262]
Length = 724
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 141/339 (41%), Gaps = 93/339 (27%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+++ DKL +G+ KD+S K LIS+ Y+ Y+
Sbjct: 437 NKKIIELGLDKLSTYGIMKDYSKEGLKDFINTLISHRYI------------------DYI 478
Query: 61 GS---ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
G R + +L N +++ E+ +K+ + +N +L+ +L
Sbjct: 479 GEYPVVRLNQSSIDILKGNEKVMFKEK----------IKAKSVSKNN-------ELFDLL 521
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R+++A G PY + GD T+K++++ P +++L+ I GV + ++ +G+ L I
Sbjct: 522 RSLRREIALEEGVPPYIVFGDNTLKEMSVRIPVNESQLSEISGVGEKKILKYGELFLNVI 581
Query: 178 RHLSQKLNLSL--------------------DGKVGEHTAFTRKLHVVVNTRTKLTPAKY 217
+ + N+ + +GK G+ +F + ++ T AK
Sbjct: 582 KEYVKVNNIEVKWESGLKINKDELEEKFKKSNGKDGKKKSFEITIDMLREGDKFHTIAK- 640
Query: 218 EAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEI 277
E LSI + ++ + YL E F+I++ D +
Sbjct: 641 -------ERELSITTVLSH-----------IQQYLEEGNKIDFEIDF----------DSL 672
Query: 278 FSAIQE-----AISKVGCKDKLKPIKNELPDDITYAHIK 311
FS +E AI KVG KLKPIK L +D++Y I+
Sbjct: 673 FSKREEELVLDAIDKVGY-SKLKPIKENLEEDVSYEKIR 710
>gi|188589125|ref|YP_001921452.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum E3 str.
Alaska E43]
gi|188499406|gb|ACD52542.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum E3 str.
Alaska E43]
Length = 812
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 32/213 (15%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV+ F++L +G+ KD+S++ K LIS+ Y++ + Y + ++Q+ L
Sbjct: 438 NKKVIQFNFNELSTYGIMKDYSNDELKNFINTLISHRYIS-VVNGTYPVLGLNQRSMSVL 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S + F ++ + E D +LY +L E
Sbjct: 497 KSEEK-------VVFKEFKIEKKARE-----------------------DNELYSILKEI 526
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+++ G PY + GD T+K++ + P K ++ NI GV + +G+ I+
Sbjct: 527 RKEISVENGVPPYVIFGDATLKEMTVKYPVNKEQMLNISGVGEIKYKKYGEIFENEIKKF 586
Query: 181 SQKLNLSLDGKVGEHTAF-TRKLHVVVNTRTKL 212
++ N+ + ++ E +H+ +NT +L
Sbjct: 587 IKENNIEISNEINEKEEVKMESIHLDINTNEEL 619
>gi|427427005|ref|ZP_18917050.1| ATP-dependent DNA helicase RecQ [Caenispirillum salinarum AK4]
gi|425883706|gb|EKV32381.1| ATP-dependent DNA helicase RecQ [Caenispirillum salinarum AK4]
Length = 600
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 17/168 (10%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D L + G+GK+ S W+T+ Q+I+YGY+ + V + PD
Sbjct: 446 DALSVFGIGKEFSKEQWRTVFRQMIAYGYIRADAEAHGALVLI------------PDTAR 493
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
P+L ++ E E G +S + AD L+ L +R +LAR G
Sbjct: 494 PILKGEQTVILRKERKEA-----GRRRSEKRERVQLTDPADDALFQALRGKRMELARAQG 548
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D T+ IA A+P+ LA+I+GV + + +G+ +Q +
Sbjct: 549 VPPYVIFHDATLIAIARAKPTDLDELADIEGVGRGKLSRYGEDFVQVV 596
>gi|18309325|ref|NP_561259.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens str. 13]
gi|18144001|dbj|BAB80049.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13]
Length = 724
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 140/339 (41%), Gaps = 93/339 (27%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK++D D+L +G+ KD+S K LIS+ Y+ Y+
Sbjct: 437 NKKIIDLGLDQLSTYGIMKDYSKEGLKDFINTLISHRYI------------------DYI 478
Query: 61 GS---ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
G R + +L N +++ E+ +K+ +N +L+ +L
Sbjct: 479 GEYPVVRLNQSSIDILKGNEKVMFKEK----------IKAKRVSKNN-------ELFDLL 521
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R+++A G PY + GD T+K++++ P +++L+ I GV + ++ +G+ L I
Sbjct: 522 RSLRREIALEEGVPPYIVFGDNTLKEMSVRIPVNESQLSEISGVGEKKILKYGEMFLNVI 581
Query: 178 RHLSQKLNLSL--------------------DGKVGEHTAFTRKLHVVVNTRTKLTPAKY 217
+ + N+ + +GK G+ +F + ++ T AK
Sbjct: 582 KEYVKVNNIEVKWESGLKINKDELEEKFKKSNGKDGKKKSFEITIDMLREGDKFHTIAK- 640
Query: 218 EAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEI 277
E LSI + ++ + YL E F+I++ D +
Sbjct: 641 -------ERELSITTVLSH-----------IQQYLEEGNKIDFEIDF----------DSL 672
Query: 278 FSAIQE-----AISKVGCKDKLKPIKNELPDDITYAHIK 311
FS +E AI KVG KLKPIK L +D++Y I+
Sbjct: 673 FSKREEELVLDAIDKVGY-SKLKPIKENLEEDVSYEKIR 710
>gi|166362830|ref|YP_001655103.1| ATP-dependent DNA helicase [Microcystis aeruginosa NIES-843]
gi|166085203|dbj|BAF99910.1| ATP-dependent DNA helicase [Microcystis aeruginosa NIES-843]
Length = 703
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 128/310 (41%), Gaps = 60/310 (19%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+++ Q L +G+GKD + WK L+ L+ L ET +D +R + ++Q + +
Sbjct: 443 ERITQYQHHLLSTYGIGKDKTVEEWKRLSRSLVQQNILVET-EDDFRILKLNQHSWEVMR 501
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
R + A + VGD +N E+D+ L+ L + R
Sbjct: 502 KQR-------------SVFIAVPQKANGQIVGD-------DNPNMVESDL-LFERLRQLR 540
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
KK+A G PY + D +++ +A ++P + I GV V +GD + I
Sbjct: 541 KKIADSQGVPPYVIFHDSSLRLMAQSKPRNLGQFRQISGVVHSKVQQYGDIFIAAINDFC 600
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
Q SL P+ +++DGL+ ++IA R
Sbjct: 601 QD---SL-------------------------PSTQFLTLQYYQDGLNAEEIA----RKR 628
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNEL 301
+K T+ ++L + + G++I+ +L ++ I+ I K+G LK +K L
Sbjct: 629 SLKVSTIYEHLAKLLEAGYEIDINQL-----VSKNKQEYIRLVIKKLG-DQSLKTLKENL 682
Query: 302 PDDITYAHIK 311
D+ +Y IK
Sbjct: 683 GDNYSYEEIK 692
>gi|149372419|ref|ZP_01891607.1| ATP-dependent DNA helicase recQ [unidentified eubacterium SCB49]
gi|149354809|gb|EDM43372.1| ATP-dependent DNA helicase recQ [unidentified eubacterium SCB49]
Length = 730
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK G+G D W L QL+ GYL + I+ Y V V+++G+++L P
Sbjct: 454 DKQAFFGIGADKEDVHWLALLRQLLVAGYLKKDIES-YGVVKVTKRGREFL------KNP 506
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
L +E+H I V D S + +G + AD +L+ +L EERKK+A
Sbjct: 507 TSFLM-------SEDH--IFKEVND--DSIIVNQKGGAVADEKLFKLLKEERKKVAEKMT 555
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
P+ + D +++ +AL P T ++N+ GV + +G + I
Sbjct: 556 LPPFVIFQDPSLEDMALKYPITLEEMSNVHGVGEGKAKKYGKTFVSLI 603
>gi|403294330|ref|XP_003938145.1| PREDICTED: Werner syndrome ATP-dependent helicase [Saimiri
boliviensis boliviensis]
Length = 1430
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 88/366 (24%), Positives = 150/366 (40%), Gaps = 70/366 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQ 58
S+++ D Q+ K L G GKD + +WWK + QLI G+L E + ++++G+
Sbjct: 990 SQRLAD-QYRKHSLFGTGKDQTESWWKAFSRQLIVEGFLVEVSGHSKFVKICVLTEKGRH 1048
Query: 59 YLGSARPDHQPPLLLTFNGEMVDAE----EHETISS-------NVGDLKSSATLEN---- 103
+L A + Q L+L N E+ + +T+SS N ++S+A N
Sbjct: 1049 WLHKANTESQS-LILQANEELWPKKFLLPSSKTVSSDTKQRSYNQVPIESTAKKSNLKKL 1107
Query: 104 -------------------------EGF------------SEADMQLYHMLLEERKKLAR 126
E F E LY L+E R+K A
Sbjct: 1108 YSYKPCDKISSGSNISKKSIMVQSLENFHSASEPVISAQEQETQTVLYRKLVEARQKQAN 1167
Query: 127 VTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNL 186
P L ++ + +A RP+T A + IDGV++ LL+ I+H Q ++
Sbjct: 1168 KMDVPPAILATNKILLDMAKMRPTTVAGVKRIDGVSEGKAAMLAP-LLEVIKHFCQTNSV 1226
Query: 187 SLDGKVGEHTAFTRKLHVVVNTRT-KLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKE 245
D +K+ +V +T L+ + + ++ E + ++ IA R P+
Sbjct: 1227 QTDLFSSTKPQEEQKMSLVAKNKTCTLSQSVAITYSLFQEKKMPLKSIAE--SRILPL-- 1282
Query: 246 QTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKV---GCKDKLKPIKNELP 302
TV +L +AV G ++ R GLT E+ I + I K+ I+ +P
Sbjct: 1283 MTVGMHLSQAVKAGCPLDLER----AGLTPEVQKIIADVIRNPPINSVMSKINQIRMLVP 1338
Query: 303 DDI-TY 307
++I TY
Sbjct: 1339 ENIDTY 1344
>gi|322421607|ref|YP_004200830.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M18]
gi|320127994|gb|ADW15554.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M18]
Length = 598
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 22/178 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+++++D + D+L G+GK HS W +L QLI GYL + + + + + +++ +
Sbjct: 436 NQRILDLKHDQLSTFGIGKHHSQEVWGSLLRQLIHLGYLEQDLAN-FSVLKLTEDAR--- 491
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
PLL GEM E + + V + KS+A D L+ L E
Sbjct: 492 ---------PLL---RGEM-RLELAKPRDTRVVEKKSAARK-----PAYDGALFQELREL 533
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A P+ + D T+ ++A P K L I GV QH + +GD L+ I+
Sbjct: 534 RKQIADEQQVPPFVVFADATLAEMAAQMPKDKWELLKITGVGQHKLARYGDAFLRVIK 591
>gi|297307109|ref|NP_001137329.2| Werner syndrome ATP-dependent helicase [Bos taurus]
Length = 1404
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 80/353 (22%), Positives = 139/353 (39%), Gaps = 68/353 (19%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQYLGSARPDHQPPL 71
+ G GKD + WWK L+ QLI G+L E + +++++G+ + A+ + P L
Sbjct: 969 VFGTGKDRTEKWWKALSRQLIIEGFLAEVPGHSKYVKICTLTEKGRNWFAKAKTESPPRL 1028
Query: 72 LLTFNGEMV-------------DAEEHET------------------------------- 87
L N ++ EEH +
Sbjct: 1029 FLQTNEQLCPRTFLPSSKAVSSGTEEHVSDQVPVKLTSEKQFNLDQLYSYKVHDKISSGS 1088
Query: 88 --------ISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQ 139
+SS KSS + + E LY L+ R+K A + P L ++
Sbjct: 1089 NSPKNSIIVSSPRKYYKSSEPVISAQEQETQTALYGELVAARQKHANMMDVPPAILATNK 1148
Query: 140 TIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLD-GKVGEHTAF 198
+ +A RP+T + IDGV++ + LL+ IR Q ++ D E
Sbjct: 1149 ILLDMAKMRPTTVENVKRIDGVSEGKAVMLAP-LLEVIRRFCQINSVQTDLFSSSELQEE 1207
Query: 199 TRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSE 258
+K V+ N L+P+ + + E +S++ A R+ P+ V +L +A+
Sbjct: 1208 EKKNLVLENKANSLSPSMAITYFFFQEKKMSLKDTAE--KRTLPL--TAVGMHLSQAMKA 1263
Query: 259 GFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK---DKLKPIKNELPDDI-TY 307
G+ ++ R GLT EI I + I +K+ I+ +P++I TY
Sbjct: 1264 GYPVDTER----AGLTPEIQKIIADVIRNPPINSDTNKINLIRIYVPENIDTY 1312
>gi|32474001|ref|NP_866995.1| ATP-dependent DNA helicase RecQ [Rhodopirellula baltica SH 1]
gi|32444538|emb|CAD74537.1| ATP-dependent DNA helicase RecQ [Rhodopirellula baltica SH 1]
Length = 749
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 137/313 (43%), Gaps = 43/313 (13%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+KV+ A D+L + L + +T QLIS +L T + ++++ +++ G+
Sbjct: 461 QKVIQAGHDQLSTYNLLSSEGATAVRTWIEQLISQNHLIRTGE--FQSLRLTESGRA--- 515
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
LL GE+ T++ S NE + D +L+ L R
Sbjct: 516 ----------LLKREGEV-------TLTKVSAKSSSRRPAANESWEGVDRKLFDHLRSLR 558
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
++A G Y + GD ++++A RP++ +L NI G+ G L +I
Sbjct: 559 SEMASERGVPAYVIFGDAVLRELARVRPTSIEKLTNIRGIGDRKREEFGQLFLDSIDQYC 618
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTP--AKYEAWKMWHEDGLSIQKIANYPGR 239
++ L D +A K R TP A +A +++ E G S++++A+ GR
Sbjct: 619 EENPLDRDQTANTTSATISK------PRANATPNAATVQASQLFRE-GCSVEEVASKMGR 671
Query: 240 SAPIKEQTVVDYL-LEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIK 298
+ + + DY+ E +++ W +++E AI+ A+ V ++L+P+
Sbjct: 672 AESTVNKYLSDYIQAEKITD--PSQW--------VSNEEAEAIRAALMAVE-DERLRPVF 720
Query: 299 NELPDDITYAHIK 311
L ++++Y I+
Sbjct: 721 EALGEEVSYEKIR 733
>gi|172036703|ref|YP_001803204.1| ATP-requiring DNA helicase [Cyanothece sp. ATCC 51142]
gi|354554517|ref|ZP_08973821.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. ATCC 51472]
gi|171698157|gb|ACB51138.1| ATP-requiring DNA helicase [Cyanothece sp. ATCC 51142]
gi|353553326|gb|EHC22718.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. ATCC 51472]
Length = 711
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 124/298 (41%), Gaps = 56/298 (18%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
+G+GKD S WK L LI G++ ET D + + +++
Sbjct: 457 YGIGKDKSVAEWKMLGRSLIHQGFVNETT-DGFSVLKLNK-------------------- 495
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLE-NEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
++ E+ E I+ LK A+ + N +E+D+ L H L + RK LA APY
Sbjct: 496 YSWEIFRNERKVEIAI-TKSLKVKASNDYNPRKAESDL-LLHQLRKLRKHLADQNKVAPY 553
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVG 193
+ D +++ +A +P T I GV + +GD + IR Q+ +L
Sbjct: 554 VVFADSSLRLMAQIKPQTIEAFKKISGVTAYKAEQYGDSFVSEIREFCQQQSLP------ 607
Query: 194 EHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLL 253
T L + ++ GL+I++I+ +KE T+ ++
Sbjct: 608 ----------------TPLPTSSNMITLQLYQQGLTIREISE----RRNLKESTIYSHIS 647
Query: 254 EAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIK 311
E ++ I+ R +++E + I + I +G L P+KN L DD +Y IK
Sbjct: 648 ELLAMNQPIDIDRF-----ISEEKKAMIIKCIQTIG-DSSLTPLKNHLGDDYSYDEIK 699
>gi|440907539|gb|ELR57678.1| Werner syndrome ATP-dependent helicase [Bos grunniens mutus]
Length = 1430
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/353 (22%), Positives = 139/353 (39%), Gaps = 68/353 (19%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQYLGSARPDHQPPL 71
+ G GKD + WWK L+ QLI G+L E + +++++G+ + A+ + P L
Sbjct: 995 VFGTGKDRTEKWWKALSRQLIIEGFLAEVPGHSKYVKICTLTEKGRNWFAKAKTESPPRL 1054
Query: 72 LLTFNGEMV-------------DAEEHET------------------------------- 87
L N ++ EEH +
Sbjct: 1055 FLQTNEQLCPRTFLPSSKAVSSGTEEHVSDQVPVKLTSEKQFNLDQLYSYKAHDKISSGS 1114
Query: 88 --------ISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQ 139
+SS KSS + + E LY L+ R+K A + P L ++
Sbjct: 1115 NSPKNSIIVSSPRKYYKSSEPVISAQEQETQTALYGELVAARQKHANMMDVPPAILATNK 1174
Query: 140 TIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFT 199
+ +A RP+T + IDGV++ + LL+ IR Q ++ D
Sbjct: 1175 ILLDMAKMRPTTVENVKRIDGVSEGKAVMLAP-LLEVIRRFCQINSVQTDLFSSTELQEE 1233
Query: 200 RKLHVVV-NTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSE 258
K ++V+ N L+P+ + + E +S++ A R+ P+ V +L +A+
Sbjct: 1234 EKKNLVLENKANSLSPSVAITYSFFQEKKMSLKDTAE--KRTLPL--TAVGMHLSQAMKA 1289
Query: 259 GFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK---DKLKPIKNELPDDI-TY 307
G+ ++ R GLT EI I + I +K+ I+ +P++I TY
Sbjct: 1290 GYPVDTER----AGLTPEIQKIIADVIRNPPINSDTNKINLIRIYVPENIDTY 1338
>gi|427733629|ref|YP_007053173.1| ATP-dependent DNA helicase RecQ [Rivularia sp. PCC 7116]
gi|427368670|gb|AFY52626.1| ATP-dependent DNA helicase RecQ [Rivularia sp. PCC 7116]
Length = 719
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 137/311 (44%), Gaps = 48/311 (15%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV+ DKL +G+GKD + + W+ L L+ G L +T D Y + ++
Sbjct: 442 TQKVLSKGHDKLSTYGIGKDRTLDEWRMLGRSLLHQGLLEQTT-DGYAVLKLN------- 493
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
F+ E++ + ++ + K + +E +AD+ L+ L E
Sbjct: 494 -------------AFSLEVMKKQRSVSVVVPAKE-KVAWKGRSEKAEQADI-LFQKLREL 538
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA PY + GD T++ + +P TK + + GV H + +GD + I+
Sbjct: 539 RKQLADAQSVPPYVIFGDSTLRLMTQMKPKTKQEFSQLAGVGSHKLTQYGDKFIAVIKAY 598
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
Q E + +K + + ++ + + +++ H++GLSI++IA +
Sbjct: 599 LQ-----------EQSPQKQK---YADQKGDISYTELQTFEL-HKEGLSIKEIA----QQ 639
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
++ T+ +L + + + ++ L TD+ IQ + + L PIK
Sbjct: 640 RNLRSTTITRHLSDLIEKDKPVDLNLLVT----TDKQKKIIQ--VLDILGDISLTPIKEY 693
Query: 301 LPDDITYAHIK 311
L DD ++ I+
Sbjct: 694 LGDDYSFDEIR 704
>gi|428310069|ref|YP_007121046.1| ATP-dependent DNA helicase RecQ [Microcoleus sp. PCC 7113]
gi|428251681|gb|AFZ17640.1| ATP-dependent DNA helicase RecQ [Microcoleus sp. PCC 7113]
Length = 757
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 127/297 (42%), Gaps = 54/297 (18%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
+G+GKD S++ WK L L+ G L ET D YR + +++ + L S R
Sbjct: 504 YGIGKDRSADDWKMLGRSLLHQGLLDETT-DGYRILKLNKLSWEVLRSQR---------- 552
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYA 134
E + K+ A + N +EA+M L L + RK++A APY
Sbjct: 553 ---------TVEIAITQTAVAKALAEI-NPRSAEAEM-LLERLRKLRKQIADAHSVAPYV 601
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGE 194
+ D +++ +A +P T A I GV + V +GD + IR Q+
Sbjct: 602 VFADSSLRLMAQQQPQTLEAFAKISGVVTNKVNQYGDKFVSEIRAFCQE----------- 650
Query: 195 HTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLE 254
+KL + + T + +Y ++ GLS+++IA G +T+V +L E
Sbjct: 651 -----QKLPIPLPANTHMVTLQY------YQQGLSVEEIAQKRG----FTPRTIVTHLSE 695
Query: 255 AVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIK 311
+ ++ RL + E I + I VG + LK ++ + ++ +Y I+
Sbjct: 696 LLEMKQPVDLNRL-----VVPERQKIILQGIQVVG-ESSLKTLREHVGEEYSYEEIQ 746
>gi|198432737|ref|XP_002131753.1| PREDICTED: similar to FFA-1 protein [Ciona intestinalis]
Length = 1194
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/358 (19%), Positives = 157/358 (43%), Gaps = 66/358 (18%)
Query: 9 FDKLLLH---GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYR-----TVSVSQQGKQYL 60
FD+ H G G +HS WW+ L L++ YL E K + + TV + +G++++
Sbjct: 712 FDRFTQHPKFGSGGNHSQKWWRALGKSLLNEQYLKE--KQMRKGSFGATVEIGPKGQEWI 769
Query: 61 GSARPDHQPPLLLTFNGEMVDAE-------EHETISSNVGD------LKSSATLENEGFS 107
G + PL+L ++ + E + T+S+ G + + ++ E +
Sbjct: 770 GKRQFSSNLPLMLVPTIDLTNREMRTSSGPSNPTVSTTEGGKTLLPLIPGAGSMSKEKLN 829
Query: 108 EADM------------------------QLYHMLLEERKKLARVTGTAPYALCGDQTIKK 143
+ + LY +LL R ++A+ P+ + ++ + +
Sbjct: 830 KLTLGPYLPTNPTLNVVKKPTTVDKHSGPLYRLLLALRNEIAQDMDIPPHLVANNKDLLE 889
Query: 144 IALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLS-------LDGKVGEHT 196
++ ARPSTK RL +DG++ V G+ +L I + S + +
Sbjct: 890 LSKARPSTKDRLLRVDGMSVVKVKRIGEPVLVVINSYCTEHEASFDNFDDEDEDFLPPSQ 949
Query: 197 AFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAV 256
A ++ V T+ +T + ++HE L++++I+ G ++ T+ +L +A+
Sbjct: 950 AARKRNDTGVPTKP-ITDTVRTTYNLFHERCLTLEEISKERG----LQISTLGTHLGDAL 1004
Query: 257 SEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK---DKLKPIKNELPDDITYAHIK 311
S + +++ L G+T+++ + +++ + K +L P+K+ L + ++ +K
Sbjct: 1005 SACYPVSFRHL----GITEDLINLVEDTVRKPPINSDVSRLVPVKDRLGSSVDWSQLK 1058
>gi|343085469|ref|YP_004774764.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
gi|342354003|gb|AEL26533.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
Length = 725
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 21/170 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL G+GKD WKT+ Q + +G L + I++ Y + +S++ + +L +
Sbjct: 447 DKLPSFGIGKDKDETHWKTVLRQSMIFGLLEKDIEN-YGIILLSEKSEDFLKNPYS---- 501
Query: 70 PLLLTFNGEMVDAEEH--ETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+V ++ H + ++ NV SS + N G D +LY +L ERKK+A+
Sbjct: 502 ---------VVISKNHNFDEMAENV----SSEEMSNVG-KAYDEKLYELLKLERKKVAKA 547
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D +++++A P+T+ LA I+GV V G ++ I
Sbjct: 548 KNLPPYVIFQDPSLEEMATVYPTTREELAQINGVGTGKVTKFGRSFIRLI 597
>gi|440712393|ref|ZP_20893014.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Rhodopirellula baltica SWK14]
gi|436442914|gb|ELP36007.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Rhodopirellula baltica SWK14]
Length = 745
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 138/314 (43%), Gaps = 45/314 (14%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+KV+ A D+L + L + +T QLIS +L T + ++++ +++ G+
Sbjct: 457 QKVIQAGHDQLSTYNLLSSEGATAVRTWIEQLISQNHLIRTGE--FQSLRLTESGRA--- 511
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
LL GE+ T++ S NE + D +L+ L R
Sbjct: 512 ----------LLKREGEV-------TLTKVSAKSSSRRPAANESWEGVDRKLFDHLRSLR 554
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
++A G Y + GD ++++A RP++ +L NI G+ G L +I
Sbjct: 555 SEMASERGVPAYVIFGDAVLRELARVRPTSIEKLTNIRGIGDRKREEFGQLFLDSIDQYC 614
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTP--AKYEAWKMWHEDGLSIQKIANYPGR 239
++ L D +A K R TP A +A +++ E G S++++A+ GR
Sbjct: 615 EENPLDRDQTANASSAAISK------PRVNATPNAATVQASQLFRE-GCSVEEVASKMGR 667
Query: 240 SAPIKEQTVVDYL-LEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD-KLKPI 297
+ + + DY+ E +++ W +++E AI+ A+ + +D +L+P+
Sbjct: 668 AESTVNKYLSDYIQAEKITD--PSQW--------VSNEEAEAIRAAL--IAAEDERLRPV 715
Query: 298 KNELPDDITYAHIK 311
L ++++Y I+
Sbjct: 716 FEALGEEVSYEKIR 729
>gi|416894183|ref|ZP_11924993.1| ATP-dependent DNA helicase [Aggregatibacter aphrophilus ATCC 33389]
gi|347813652|gb|EGY30318.1| ATP-dependent DNA helicase [Aggregatibacter aphrophilus ATCC 33389]
Length = 630
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D Q D+L ++G+GK+HS+ +W+++ QLI G + + I + T+ +++ K L
Sbjct: 463 NQKIRDQQHDQLSVYGIGKEHSAEYWQSVLRQLIHLGLVRQIIGEYGNTLQLTENAKPIL 522
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P E + + + ++A + S D L+ L
Sbjct: 523 RGETP-------------------LELATPRLSSIVTTAMTQKSAVSFYDKDLFARLRFL 563
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A +P + + I+GV + G + IR
Sbjct: 564 RKQIADKENIPPYIVFNDATLQEMAQYQPVSNIEMLQINGVGSIKLERFGQPFMALIR 621
>gi|109504268|ref|XP_001059940.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog isoform 1
[Rattus norvegicus]
gi|392354016|ref|XP_002728460.2| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Rattus
norvegicus]
Length = 1400
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 143/356 (40%), Gaps = 74/356 (20%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQQGKQYLGSARPDHQPPL 71
L G GK+ + +WWK L++ LI+ G+L E K +T S++++G+++LG A P L
Sbjct: 968 LFGAGKEQAESWWKALSHHLIAEGFLVEVPKQNKFIKTCSLTKKGRKWLGEAILQSPPSL 1027
Query: 72 LLTFNGEMV--------------DAEEH-------------------------ETISSNV 92
+L + E + + H E SS
Sbjct: 1028 VLQADEEAFSRKALLSSSNPVSSETKPHSSNQKPTGSSTQQSNLEGAYSDKVPEKFSSGS 1087
Query: 93 GDLKSSATLENEGFS-----------EADMQ--LYHMLLEERKKLARVTGTAPYALCGDQ 139
K S +++ G S E D + LY L+E R+K A P L ++
Sbjct: 1088 NIPKKSVVMQSPGTSYSSWEPVISAQEVDTRTVLYARLVEARQKHANEVDVPPAVLATNK 1147
Query: 140 TIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQ----KLNLSLDGKVGEH 195
+ +A RP+T + IDGV++ L + I+H Q + +L K E
Sbjct: 1148 VLLDMAKMRPTTVENVKQIDGVSEGKAALLAP-LTEVIKHFCQVNSVQTDLFASTKPQED 1206
Query: 196 TAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEA 255
++++ N L + + ++ E +S+ IA R P+ V +L +A
Sbjct: 1207 EEKSQEME---NKACSLPQSAAVTYALFQEKKMSLHSIAE--NRLLPL--TAVGMHLAQA 1259
Query: 256 VSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD---KLKPIKNELPDDI-TY 307
V G ++ R GLT E I + I K+K I+ +P++I TY
Sbjct: 1260 VKAGHPLDMER----AGLTPETRKIIMDVIRNPPINSDMYKVKLIRMLVPENIDTY 1311
>gi|422337702|ref|ZP_16418672.1| ATP-dependent DNA helicase recQ [Aggregatibacter aphrophilus F0387]
gi|353345034|gb|EHB89332.1| ATP-dependent DNA helicase recQ [Aggregatibacter aphrophilus F0387]
Length = 631
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D Q D+L ++G+GK+HS+ +W+++ QLI G + + I + T+ +++ K L
Sbjct: 463 NQKIRDQQHDQLSVYGIGKEHSAEYWQSVLRQLIHLGLVRQIIGEYGNTLQLTENAKPIL 522
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P E + + + ++A + S D L+ L
Sbjct: 523 RGETP-------------------LELATPRLSSIVTTAMTQKSAVSFYDKDLFARLRFL 563
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A +P + + I+GV + G + IR
Sbjct: 564 RKQIADKENIPPYIVFNDATLQEMAQYQPVSNIEMLQINGVGSIKLERFGQPFMALIR 621
>gi|407973419|ref|ZP_11154331.1| ATP-dependent DNA helicase RecQ [Nitratireductor indicus C115]
gi|407431260|gb|EKF43932.1| ATP-dependent DNA helicase RecQ [Nitratireductor indicus C115]
Length = 619
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D++ +G+GK+H W+++ Q+I+ G + + +S+S+ G+++L +
Sbjct: 465 DRISTYGIGKEHDQRTWRSILRQMIARGLFDVDLAG-HGGLSISEGGRRFL------KEK 517
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
P+L+ + + + S + D L+ L E+R ++AR
Sbjct: 518 PVLMLRVPRPAGSRGRKAVRSPAASV----------LDATDGALFKALREKRMEIAREQN 567
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D+T+ ++A +RP+++A LA I GV + + +G L+ I
Sbjct: 568 LPPYVIFHDRTLVEMASSRPASRAELAGISGVGEAKLDRYGAPFLEVI 615
>gi|149057893|gb|EDM09136.1| rCG43045, isoform CRA_b [Rattus norvegicus]
Length = 1335
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 143/356 (40%), Gaps = 74/356 (20%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQQGKQYLGSARPDHQPPL 71
L G GK+ + +WWK L++ LI+ G+L E K +T S++++G+++LG A P L
Sbjct: 903 LFGAGKEQAESWWKALSHHLIAEGFLVEVPKQNKFIKTCSLTKKGRKWLGEAILQSPPSL 962
Query: 72 LLTFNGEMV--------------DAEEH-------------------------ETISSNV 92
+L + E + + H E SS
Sbjct: 963 VLQADEEAFSRKALLSSSNPVSSETKPHSSNQKPTGSSTQQSNLEGAYSDKVPEKFSSGS 1022
Query: 93 GDLKSSATLENEGFS-----------EADMQ--LYHMLLEERKKLARVTGTAPYALCGDQ 139
K S +++ G S E D + LY L+E R+K A P L ++
Sbjct: 1023 NIPKKSVVMQSPGTSYSSWEPVISAQEVDTRTVLYARLVEARQKHANEVDVPPAVLATNK 1082
Query: 140 TIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQ----KLNLSLDGKVGEH 195
+ +A RP+T + IDGV++ L + I+H Q + +L K E
Sbjct: 1083 VLLDMAKMRPTTVENVKQIDGVSEGKAALLAP-LTEVIKHFCQVNSVQTDLFASTKPQED 1141
Query: 196 TAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEA 255
++++ N L + + ++ E +S+ IA R P+ V +L +A
Sbjct: 1142 EEKSQEME---NKACSLPQSAAVTYALFQEKKMSLHSIAE--NRLLPLT--AVGMHLAQA 1194
Query: 256 VSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD---KLKPIKNELPDDI-TY 307
V G ++ R GLT E I + I K+K I+ +P++I TY
Sbjct: 1195 VKAGHPLDMER----AGLTPETRKIIMDVIRNPPINSDMYKVKLIRMLVPENIDTY 1246
>gi|251793708|ref|YP_003008438.1| ATP-dependent DNA helicase RecQ [Aggregatibacter aphrophilus
NJ8700]
gi|247535105|gb|ACS98351.1| ATP-dependent DNA helicase RecQ [Aggregatibacter aphrophilus
NJ8700]
Length = 631
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D Q D+L ++G+GK+HS+ +W+++ QLI G + + I + T+ +++ K L
Sbjct: 463 NQKIRDQQHDQLSVYGIGKEHSAEYWQSVLRQLIHLGLVRQIIGEYGNTLQLTENAKPIL 522
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P E + + + ++A + S D L+ L
Sbjct: 523 RGETP-------------------LELATPRLSSIVTTAMTQKSAVSFYDKDLFARLRFL 563
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A +P + + I+GV + G + IR
Sbjct: 564 RKQIADKENIPPYIVFNDATLQEMAQYQPVSNIEMLQINGVGSIKLERFGQPFMALIR 621
>gi|410455550|ref|ZP_11309427.1| ATP-dependent DNA helicase RecQ [Bacillus bataviensis LMG 21833]
gi|409929031|gb|EKN66121.1| ATP-dependent DNA helicase RecQ [Bacillus bataviensis LMG 21833]
Length = 709
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 130/313 (41%), Gaps = 50/313 (15%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV + FD+L +G+ KD + LIS L + + T+ V+ +GK L
Sbjct: 437 NKKVTEMGFDRLTTYGIMKDQGAKEVSDFIEFLISQE-LIAIEQGQFPTIYVAPKGKDVL 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P ++ +A + + +S N L+ L +
Sbjct: 496 LGHEPVYRK-----------EAAKVKQVSKN-------------------GPLFEELRDV 525
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R+++A P+ + D IK + P T + GV +H + +G +Q IR
Sbjct: 526 RRRIAETEKVPPFVIFSDAAIKDMCAKLPKTNEEFLQVSGVGEHKLKKYGLEFIQAIRTF 585
Query: 181 SQKLNLSLDGKV-GEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGR 239
+ +N ++ E A + V T A ++ LSI++IA
Sbjct: 586 LE-VNPEYQSEIQAEQAAPKKAAKKAVGDSHLETLA-------LNQKHLSIEEIAE---- 633
Query: 240 SAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKN 299
+ TV +LL+ +G D+++TR + E +++A+ + G +++LKPIK
Sbjct: 634 QRELAVSTVESHLLQCAQQGLDVDFTR-----HVPGEYIPLLEKAVEEAG-RERLKPIKE 687
Query: 300 ELPDDITYAHIKA 312
LP++++Y IK
Sbjct: 688 LLPEEVSYFMIKV 700
>gi|397663426|ref|YP_006504964.1| ATP-dependent DNA helicase [Legionella pneumophila subsp.
pneumophila]
gi|395126837|emb|CCD05020.1| ATP-dependent DNA helicase [Legionella pneumophila subsp.
pneumophila]
Length = 608
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 25/185 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S+K+ + + L G+GKD S+N+WK LA+QLI Y + +
Sbjct: 444 SEKIKQSGHEHLSTFGIGKDKSANYWKHLAWQLIHKDYCLQDM----------------- 486
Query: 61 GSARPDHQPPLLLTFNG-EMVDAEEHETISSNVGDLKSSAT--LENEGFSEADMQLYHML 117
+H L LT ++ EE +++ DL SS +N F L+ L
Sbjct: 487 -----NHFNVLRLTPKAIPLLKGEESISLTIPNNDLNSSKKKGKQNPSFKPESNPLFEKL 541
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R++LA P+ + D T+ ++A +P +L N+ GV QH + +G + L+ +
Sbjct: 542 RALRRQLADEENKPPFMIFSDATLHEMAHLKPKNSKQLLNVSGVGQHKLARYGHYFLEAL 601
Query: 178 RHLSQ 182
S+
Sbjct: 602 NEFSE 606
>gi|389574080|ref|ZP_10164149.1| ATP-dependent helicase [Bacillus sp. M 2-6]
gi|388426269|gb|EIL84085.1| ATP-dependent helicase [Bacillus sp. M 2-6]
Length = 593
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 31/183 (16%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV+D FD+L + L K HS+ LI+ YL + + + T+ V+Q+GK+ L
Sbjct: 439 NKKVLDFGFDRLPTYALMKQHSAQHISDFIEFLITEEYLHMS-EGAFPTLKVTQKGKKVL 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
ET+ +K+ A EN L+ L
Sbjct: 498 VG----------------------QETVYKKQA-IKAEAIQENGA-------LFEQLRMV 527
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R KLAR G P+ + DQT+K+++ P T+ L NI GV +GD L+ IR
Sbjct: 528 RMKLAREQGVPPFVVFSDQTLKEMSAVEPKTEEELLNIKGVGAQKREKYGDVFLEEIRLF 587
Query: 181 SQK 183
+K
Sbjct: 588 IEK 590
>gi|255525959|ref|ZP_05392885.1| ATP-dependent DNA helicase RecQ [Clostridium carboxidivorans P7]
gi|296188671|ref|ZP_06857059.1| ATP-dependent DNA helicase RecQ [Clostridium carboxidivorans P7]
gi|255510378|gb|EET86692.1| ATP-dependent DNA helicase RecQ [Clostridium carboxidivorans P7]
gi|296046935|gb|EFG86381.1| ATP-dependent DNA helicase RecQ [Clostridium carboxidivorans P7]
Length = 711
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 135/320 (42%), Gaps = 62/320 (19%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLIS--YGYLTETIKDVYRTVSVSQQGKQY 59
KKV+D F+KL +G+ K+++ K L LI+ Y YLTE+ V R
Sbjct: 440 KKVLDFGFEKLSTYGIMKNYTVKEIKDLINVLIADDYLYLTESQFPVVRL---------- 489
Query: 60 LGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
+ + GE E + + K EN L+ +L
Sbjct: 490 --------KEKAVSVLKGE-------EKVFQKIHKAKKKVVQEN--------SLFLLLKS 526
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR- 178
RK ++ PY + D ++ ++ P +I GV + + +G+ L TIR
Sbjct: 527 LRKTISEREAVPPYIIFADAALRDMSEKLPENDEEFLDIKGVGESKLQKYGEEFLNTIRA 586
Query: 179 ----HLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIA 234
H S+K++ + ++ E + H V P+ M++E G S+++I+
Sbjct: 587 YIEEHPSEKVSYKTEKELNEDVC---EKHDV--------PSHVVTLNMFNE-GKSLEEIS 634
Query: 235 NYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKL 294
+ +K T+ D+++ EG D++ + + IF AI+++ S KL
Sbjct: 635 ----KERNLKFMTIEDHIMRCAMEGMDVDLDFFIPK-EYEECIFQAIEKSDST-----KL 684
Query: 295 KPIKNELPDDITYAHIKACL 314
+ IK LP++++Y IKA L
Sbjct: 685 RNIKEMLPEEVSYTAIKAAL 704
>gi|148360486|ref|YP_001251693.1| ATP-dependent DNA helicase RecQ [Legionella pneumophila str. Corby]
gi|148282259|gb|ABQ56347.1| ATP-dependent DNA helicase RecQ [Legionella pneumophila str. Corby]
Length = 608
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 25/185 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S+K+ + + L G+GKD S+N+WK LA+QLI Y + +
Sbjct: 444 SEKIKQSGHEHLSTFGIGKDKSANYWKHLAWQLIHKDYCLQDM----------------- 486
Query: 61 GSARPDHQPPLLLTFNG-EMVDAEEHETISSNVGDLKSSAT--LENEGFSEADMQLYHML 117
+H L LT ++ EE +++ DL SS +N F L+ L
Sbjct: 487 -----NHFNVLRLTPKAIPLLKGEESISLTIPNNDLNSSKKKGKQNPSFKPESNPLFEKL 541
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R++LA P+ + D T+ ++A +P +L N+ GV QH + +G + L+ +
Sbjct: 542 RALRRQLADEENKPPFMIFSDATLHEMAHLKPKNSKQLLNVSGVGQHKLARYGHYFLEAL 601
Query: 178 RHLSQ 182
S+
Sbjct: 602 NEFSE 606
>gi|421615254|ref|ZP_16056286.1| ATP-dependent DNA helicase RecQ [Rhodopirellula baltica SH28]
gi|408494014|gb|EKJ98640.1| ATP-dependent DNA helicase RecQ [Rhodopirellula baltica SH28]
Length = 745
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 136/313 (43%), Gaps = 43/313 (13%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+KV+ A D+L + L + +T QLIS +L T + ++++ +++ G+
Sbjct: 457 QKVIQAGHDQLSTYNLLSSEGATAVRTWIEQLISQNHLIRTGE--FQSLRLTESGRA--- 511
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
LL GE+ T++ S NE + D +L+ L R
Sbjct: 512 ----------LLKREGEV-------TLTKVSAKSSSRRPAANESWEGVDRKLFDHLRSLR 554
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
++A G Y + GD ++++A RP++ +L NI G+ G L +I
Sbjct: 555 SEMASERGVPAYVIFGDAVLRELARVRPTSIEKLTNIRGIGDRKREEFGQLFLDSIDQYC 614
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTP--AKYEAWKMWHEDGLSIQKIANYPGR 239
++ L D +A K R TP A +A +++ E G S++++A+ GR
Sbjct: 615 EENPLDRDQTANASSAAISK------PRANATPNAATVQASQLFRE-GCSVEEVASKMGR 667
Query: 240 SAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVG-LTDEIFSAIQEAISKVGCKDKLKPIK 298
+ E TV YL + I ++ D +++E AI+ A+ ++L+P+
Sbjct: 668 A----ESTVNKYLSDY------IQAEKITDPSQWVSNEEAEAIRAAL-MAAEDERLRPVF 716
Query: 299 NELPDDITYAHIK 311
L ++++Y I+
Sbjct: 717 EALGEEVSYEKIR 729
>gi|381210883|ref|ZP_09917954.1| ATP-dependent DNA helicase [Lentibacillus sp. Grbi]
Length = 714
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 29/215 (13%)
Query: 109 ADMQ--LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLV 166
AD Q L+ L E RK++A G PY L D T+K+++ P TK + +I GV +
Sbjct: 516 ADYQEELFVSLRELRKQMADEQGVPPYVLFSDATLKELSRYFPETKEDMLSIKGVGEKKY 575
Query: 167 ITHGDHLLQTIRH-LSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHE 225
+G+ L ++ L + ++S K+ ++K + P+ ++ M+ +
Sbjct: 576 DQYGEAFLVAVKDWLRENPDVSRPVKIAGAPPVSQK-----KEQADDRPSHLISYTMF-Q 629
Query: 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
G SI+ IA + QT+ ++ +A +G + W EIF +E
Sbjct: 630 SGKSIKDIA----LIRDLTPQTIEGHIFKAFKDGHPLAW-----------EIFFNREEES 674
Query: 286 SKVGCKD-----KLKPIKNELPDDITYAHIKACLV 315
+ + +D +LKP+K LPD+ Y IKA LV
Sbjct: 675 AILAARDELEDLRLKPLKESLPDEYAYVKIKAVLV 709
>gi|374261468|ref|ZP_09620050.1| hypothetical protein LDG_6438 [Legionella drancourtii LLAP12]
gi|363538095|gb|EHL31507.1| hypothetical protein LDG_6438 [Legionella drancourtii LLAP12]
Length = 607
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 23/183 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S+K+ ++L G+GKD S ++WK LA+QLI Y + I + + ++Q+
Sbjct: 444 SEKIKQFGHEQLSTFGIGKDKSPHYWKQLAWQLIHKDYCFQDIAH-FNVLKLTQKAI--- 499
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSA--TLENEGFSEADMQLYHMLL 118
PLL EE ++ DLK S T E ++ L+ +L
Sbjct: 500 ---------PLL--------KGEEKIALTIPNNDLKGSKKKTKERRSGESSNNPLFEVLR 542
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
R+KLA P+ + D T+ + A+P +L + GV QH + +G+H L+ ++
Sbjct: 543 ALRRKLADEENKPPFMIFSDATLHAMTEAKPQNTEQLLAVPGVGQHKLAHYGNHFLKALQ 602
Query: 179 HLS 181
S
Sbjct: 603 EYS 605
>gi|170042986|ref|XP_001849186.1| werner syndrome helicase [Culex quinquefasciatus]
gi|167866388|gb|EDS29771.1| werner syndrome helicase [Culex quinquefasciatus]
Length = 1079
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 138/345 (40%), Gaps = 51/345 (14%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTET--------IKDVYRTVSVSQQGKQYLGSA-- 63
LHG+GK WWK LA L G+L + +Y+ V ++ K++L +A
Sbjct: 473 LHGVGKARDEEWWKALAALLEREGFLNKVKVPNTFNKFAVIYK-VQMTPAAKRWLETANR 531
Query: 64 --------------RPDHQPPLLLTFNG-EMVDAEEHETISS--------------NVGD 94
R PL T NG + D + I+S +
Sbjct: 532 KLKMKPTAEMFKSIRLVRAQPLFDTTNGTQSSDFQPKPKIASASTFRQLLPMPSSSSSSR 591
Query: 95 LKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPST--K 152
L + ++ + +L LL++R +LA PY + + ++++A RP +
Sbjct: 592 LLPDLSAPSKQQDDPVQELMKTLLKKRTELASTYECMPYMIASNLALQQLATLRPQNLEE 651
Query: 153 ARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLD---GKVGEHTAFTRKLHVVVNTR 209
+ A +DG + + G LL +R ++ + + ++ R L +
Sbjct: 652 MKQAKLDGFSDIKIHKFGRELLSCVRRKVREEPVEAESGGSSSSSMSSLQRALLEHPLAK 711
Query: 210 TKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCD 269
TK + W MW E G S+ IA G + E T+ +L EA+ GF +W +L
Sbjct: 712 TKFSSTFQTTWNMWQE-GRSLADIAKVRG----LAEGTLTGHLCEAIKHGFPFDWRQLA- 765
Query: 270 EVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKACL 314
+ + +++ I+ + + KL +KN ++T+ IK L
Sbjct: 766 RMDIDRDLYGHIKSNLPECLDGVKLTDVKNACMPNVTFDQIKLVL 810
>gi|432099984|gb|ELK28878.1| Werner syndrome ATP-dependent helicase [Myotis davidii]
Length = 1398
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/368 (22%), Positives = 152/368 (41%), Gaps = 71/368 (19%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQYLGSARPDHQPP- 70
L G GKD + +WW+ +Y L++ G+L E + +++++G+ +L A P
Sbjct: 961 LFGSGKDQTRSWWRAFSYHLMTEGFLAEVSGRSRYVKICTLTEKGRNWLHKANSGSSPQQ 1020
Query: 71 LLLTFNGEMVDAEEH----ETIS--------------------SNVGDLKS--------- 97
L L N E+ + H +T+S SN+ + S
Sbjct: 1021 LFLQVNEELCPRKTHLPSSKTVSPGTEQHSSHQVPTDLTAEKKSNLKKMYSYKALDKISS 1080
Query: 98 -------SATLENEGFS-------------EADMQLYHMLLEERKKLARVTGTAPYALCG 137
S T+ + G S E LY LLE R+KLA P L
Sbjct: 1081 GSNIPTKSITVSSPGKSYKSSEPVILAQEQETQTVLYGKLLEARQKLANNLDIPPAILAT 1140
Query: 138 DQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTA 197
++ + +A RP+T + I+GV++ T LL+ I+ ++ D +
Sbjct: 1141 NKILLDMAKMRPTTVENVKRINGVSEGKA-TMLAPLLEVIKQFCHINSVQTDLFSSTNPQ 1199
Query: 198 FTRKLHVVVNTR-TKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAV 256
+K +V + L P+ + ++ E +S++ +A R P+ V +L +AV
Sbjct: 1200 EEQKKSLVAKDKECSLPPSTAITYSLFQEKKMSLKSVAE--NRILPLT--AVGIHLSQAV 1255
Query: 257 SEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK---DKLKPIKNELPDDI-TY-AHIK 311
G+ ++ R GLT E+ I + I +K+K I+ +P++I TY H+
Sbjct: 1256 KAGYPVDMER----AGLTPEVQKIITDVIRNPPINSELNKIKLIRMFVPENIDTYLIHMA 1311
Query: 312 ACLVMENC 319
++ ++C
Sbjct: 1312 IEILEKDC 1319
>gi|365961574|ref|YP_004943141.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium columnare ATCC
49512]
gi|365738255|gb|AEW87348.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium columnare ATCC
49512]
Length = 731
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 94/202 (46%), Gaps = 21/202 (10%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
G+GKD +W L Q++ GY+ + I + Y + ++ +G +L + ++
Sbjct: 459 FFGIGKDQDEKYWMALIRQVMVDGYIRKDI-ETYGVLKITDKGYAFLNTP-----TSFMM 512
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
T + E D E+ +++ KSS T D L ML++ RKK+ + G PY
Sbjct: 513 TEDHEFDDNEDDTVLTAA----KSSGT--------TDEVLMAMLVDLRKKVGKKEGVPPY 560
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI-RHLSQKLNLSLDGKV 192
+ + +++ +AL P T A L+NI GV + +G + I +++ + + D V
Sbjct: 561 VVFQEFSLEDMALKYPITIAELSNIQGVGEGKAKKYGKAFVDLIAKYVDENDIIRPDDLV 620
Query: 193 GEHTAFTR--KLHVVVNTRTKL 212
+ T KL+++ N KL
Sbjct: 621 VKSTGANSGLKLYIIQNIDRKL 642
>gi|386856992|ref|YP_006261169.1| DNA helicase RecQ [Deinococcus gobiensis I-0]
gi|380000521|gb|AFD25711.1| DNA helicase RecQ [Deinococcus gobiensis I-0]
Length = 788
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 16/178 (8%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV+ L G+G+ H W+ + QL+S GYLT + G
Sbjct: 445 TEKVLAQGHQTLPTFGVGQAHGEKVWRGVLRQLVSLGYLT----------AGEHHGLSAT 494
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
G AR LL ++ E+ ++ V + + + AD L+ L
Sbjct: 495 GKAR------ALLRGEQALLLREDALQPATRVRERAGRGGSGSAPVAPADAPLFGALRAW 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
R + AR PY + D T+K IA RP + A L + GV + +GD +LQ +R
Sbjct: 549 RLERARTLAVPPYVIFSDATLKGIAELRPGSHAALGTVSGVGTRKLADYGDEVLQVVR 606
>gi|417300406|ref|ZP_12087617.1| ATP-dependent DNA helicase RecQ [Rhodopirellula baltica WH47]
gi|327543280|gb|EGF29713.1| ATP-dependent DNA helicase RecQ [Rhodopirellula baltica WH47]
Length = 745
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 136/313 (43%), Gaps = 43/313 (13%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+KV+ A D+L + L + +T QLIS +L T + ++++ +++ G+
Sbjct: 457 QKVIQAGHDQLSTYNLLSSEGATAVRTWIEQLISQNHLIRTGE--FQSLRLTESGRA--- 511
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
LL GE+ T++ S NE + D +L+ L R
Sbjct: 512 ----------LLKREGEV-------TLTKVSAKSSSRRPAANESWEGVDRKLFDHLRSLR 554
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
++A G Y + GD ++++A RP++ +L NI G+ G L +I
Sbjct: 555 SEMASERGVPAYVIFGDAVLRELARVRPTSIEKLTNIRGIGDRKREEFGQLFLDSIDQYC 614
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTP--AKYEAWKMWHEDGLSIQKIANYPGR 239
++ L D +A K R TP A +A +++ E G S++++A+ GR
Sbjct: 615 EENPLDRDQTANASSAAISK------PRVNATPNAATVQASQLFRE-GCSVEEVASKMGR 667
Query: 240 SAPIKEQTVVDYL-LEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIK 298
+ + + DY+ E +++ W +++E AI+ A+ ++L+P+
Sbjct: 668 AESTVNKYLSDYIQAEKITD--PSQW--------VSNEEAEAIRAAL-MAAEDERLRPVF 716
Query: 299 NELPDDITYAHIK 311
L ++++Y I+
Sbjct: 717 EALGEEVSYEKIR 729
>gi|345863268|ref|ZP_08815480.1| ATP-dependent DNA helicase RecQ [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345125729|gb|EGW55597.1| ATP-dependent DNA helicase RecQ [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 608
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 22/180 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S+++ + +L ++G+GK+ S W+++ QL+ G L I+ Y + +++Q
Sbjct: 440 SERIRNFGHQQLSVYGIGKEFSGPEWRSIFRQLVVRGLLAVDIQG-YGGLRLTEQ----- 493
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSE-ADMQLYHMLLE 119
ARP ++ E + K FS+ AD++L+ L
Sbjct: 494 --ARP-------------VLRGETRLDLRRERKPEKIKKKKVQRRFSDPADLELWEDLRT 538
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
RK+LA G PY + D T+ ++ + RP T A L NIDGV Q + +G+ L+ IR
Sbjct: 539 LRKELAEEQGVPPYVIFHDATLAEMVIWRPETPAALLNIDGVGQAKLEHYGEEFLELIRQ 598
>gi|54293843|ref|YP_126258.1| hypothetical protein lpl0899 [Legionella pneumophila str. Lens]
gi|53753675|emb|CAH15133.1| hypothetical protein lpl0899 [Legionella pneumophila str. Lens]
Length = 608
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 25/185 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S+K+ + + L G+GK+ S+N+WK LA+QLI Y + +
Sbjct: 444 SEKIKQSGHEHLSTFGIGKEKSANYWKHLAWQLIHKDYCLQDM----------------- 486
Query: 61 GSARPDHQPPLLLTFNG-EMVDAEEHETISSNVGDLKSSAT--LENEGFSEADMQLYHML 117
+H L LT ++ EE +++ DL SS +N F L+ L
Sbjct: 487 -----NHFNVLRLTPKAIPLLKGEESISLTIPNNDLNSSKEKGKQNPSFKPESNPLFEKL 541
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R++LA P+ + D T+ ++A ++P +L N+ GV QH + +G + L+ +
Sbjct: 542 RSLRRQLADEENKPPFMIFSDATLHEMAQSKPKNSKQLLNVSGVGQHKLARYGHYFLEAL 601
Query: 178 RHLSQ 182
S+
Sbjct: 602 NEFSE 606
>gi|52841103|ref|YP_094902.1| ATP-dependent DNA helicase RecQ [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|54296889|ref|YP_123258.1| hypothetical protein lpp0930 [Legionella pneumophila str. Paris]
gi|397666546|ref|YP_006508083.1| ATP-dependent DNA helicase [Legionella pneumophila subsp.
pneumophila]
gi|52628214|gb|AAU26955.1| ATP-dependent DNA helicase RecQ [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|53750674|emb|CAH12081.1| hypothetical protein lpp0930 [Legionella pneumophila str. Paris]
gi|395129957|emb|CCD08190.1| ATP-dependent DNA helicase [Legionella pneumophila subsp.
pneumophila]
Length = 608
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 25/185 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S+K+ + + L G+GK+ S+N+WK LA+QLI Y + +
Sbjct: 444 SEKIKQSGHEHLSTFGIGKEKSANYWKHLAWQLIHKDYCLQDM----------------- 486
Query: 61 GSARPDHQPPLLLTFNG-EMVDAEEHETISSNVGDLKSSAT--LENEGFSEADMQLYHML 117
+H L LT ++ EE +++ DL SS +N F L+ L
Sbjct: 487 -----NHFNVLRLTPKAIPLLKGEESISLTIPNNDLNSSKKKGKQNPSFKPESNPLFEKL 541
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R++LA P+ + D T+ ++A ++P +L N+ GV QH + +G + L+ +
Sbjct: 542 RALRRQLADEENKPPFMIFSDATLHEMAQSKPKNSKQLLNVSGVGQHKLARYGHYFLEAL 601
Query: 178 RHLSQ 182
S+
Sbjct: 602 NEFSE 606
>gi|254481263|ref|ZP_05094508.1| ATP-dependent DNA helicase RecQ [marine gamma proteobacterium
HTCC2148]
gi|214038426|gb|EEB79088.1| ATP-dependent DNA helicase RecQ [marine gamma proteobacterium
HTCC2148]
Length = 604
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 24/179 (13%)
Query: 8 QFD--KLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARP 65
QFD +L +GLGKD +N W+++ QL++ GYL + D + + + +Q +
Sbjct: 442 QFDHHRLATYGLGKDLDANQWRSVFRQLVARGYLRVDM-DRFGALRLEEQCR-------- 492
Query: 66 DHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLA 125
PLL EE + +V T + ++ ++ L+ L E R++LA
Sbjct: 493 ----PLL--------RGEETIQLRRDVPKKAGKQTTKTSLPADINVALWEALRERRRELA 540
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLSQK 183
G PY + D+T++++ +A P A+ + GV + + +G +Q I HL+++
Sbjct: 541 EDQGVPPYVIFHDRTLQEMCVALPQNLAQFGRLTGVGERKLDKYGADFIQVIENHLAEQ 599
>gi|320334812|ref|YP_004171523.1| ATP-dependent DNA helicase RecQ [Deinococcus maricopensis DSM
21211]
gi|319756101|gb|ADV67858.1| ATP-dependent DNA helicase RecQ [Deinococcus maricopensis DSM
21211]
Length = 702
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 75/168 (44%), Gaps = 18/168 (10%)
Query: 11 KLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPP 70
+L +G+GKDH W+ + QL + GYLT T D + ++ + Q + L
Sbjct: 456 QLPTYGVGKDHDEKTWRAVLRQLTALGYLT-TDADGHGSLIATPQARTLLKGE------- 507
Query: 71 LLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGT 130
+ LT D + + G + ATL E D L+ L R LAR G
Sbjct: 508 VTLTLRD---DPAPKKGAKAPRG--AAQATLAPE-----DQALFDALRTTRLDLAREGGV 557
Query: 131 APYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
PY + D T+K +A ARP T A L I GV + + +GD L ++
Sbjct: 558 PPYVIFHDATLKAMAEARPQTLAALGAISGVGERKLQQYGDRFLTVLQ 605
>gi|110803521|ref|YP_697657.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens SM101]
gi|110684022|gb|ABG87392.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens SM101]
Length = 721
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 135/331 (40%), Gaps = 77/331 (23%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+++ D+L +G+ KD+S K LIS+ Y+ Y+
Sbjct: 437 NKKIIELGLDQLSTYGIMKDYSKEGLKDFINTLISHRYI------------------DYI 478
Query: 61 GS---ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
G R + +L N +++ E+ +K+ +N +L+ +L
Sbjct: 479 GEYPVVRLNQSSIDILKGNEKVMFKEK----------IKAKRVSKNN-------ELFDLL 521
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R+++A G PY + GD T+K++++ P +++L+ I GV + ++ +G+ L I
Sbjct: 522 RSLRREIASEEGVPPYIVFGDNTLKEMSVRMPVNESQLSEISGVGEKKILKYGEMFLNVI 581
Query: 178 RHLSQKLNLSLDGKVG--------EHTAFTRKLHVVVNTRTKLTPAKYEAWKMWH----E 225
+ N+ + + G E ++T K +H E
Sbjct: 582 NEYVKVNNIEIKWESGLKINKDELEKKFKKGNGKDGKKKSFEITIDMLREGKKFHTIVKE 641
Query: 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSA----- 280
LSI + ++ + YL E F+I++ D +FS
Sbjct: 642 RELSITTLLSH-----------IQQYLEEGNKIDFEIDF----------DSLFSKREEKL 680
Query: 281 IQEAISKVGCKDKLKPIKNELPDDITYAHIK 311
I +AI KVG KLKPIK L +D++Y I+
Sbjct: 681 ILDAIDKVGY-SKLKPIKENLEEDVSYEKIR 710
>gi|23100496|ref|NP_693963.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
gi|22778729|dbj|BAC14997.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
Length = 715
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 100/211 (47%), Gaps = 33/211 (15%)
Query: 113 LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDH 172
L+ +L +RK+LA+ PY L D ++K +A P TK + I GV + +G+
Sbjct: 523 LFELLRSKRKELAQELELPPYVLFSDTSLKDMARYFPDTKEDMLAIKGVGEKKWDQYGEG 582
Query: 173 LLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLT--------PAKYEAWKMWH 224
L+ I +K T K + +N RTK T P+ + ++++
Sbjct: 583 FLEIITDWKEK-------------NPTIKQPIPIN-RTKRTEQISKDDRPSHIISHQLFY 628
Query: 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEA 284
G +I +IA+ + E TV +L +A EG ++W+ L+D+ I
Sbjct: 629 -SGKTIPEIASI----RELSEMTVETHLFKAGKEGHPLSWSFF-----LSDKEEQLILST 678
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACLV 315
K+G + KLKPI+ LP++++Y IKA LV
Sbjct: 679 YEKIG-ESKLKPIREALPEELSYTKIKAALV 708
>gi|253702373|ref|YP_003023562.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M21]
gi|251777223|gb|ACT19804.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M21]
Length = 599
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 23/184 (12%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
++ + + D+L G+GK HS +W L QLI GYL + + + + + +++
Sbjct: 438 RIQELKHDQLSTFGIGKQHSQEFWGNLLRQLIHLGYLEQDLAN-FSVLKLTE-------G 489
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
ARP GE V E + + V + KS+A + D L+ L E RK
Sbjct: 490 ARP--------LLRGE-VRLELAKPRDTKVVEKKSAAKKPS-----YDGVLFQELRELRK 535
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
+A P+ + D T+ ++A P K L I GV QH + +GD L+ IR HL
Sbjct: 536 GIADEQQVPPFVVFADATLAEMAAQMPKDKWELLKITGVGQHKMARYGDAFLRVIREHLE 595
Query: 182 QKLN 185
+ N
Sbjct: 596 KAEN 599
>gi|168212751|ref|ZP_02638376.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens CPE str.
F4969]
gi|170715796|gb|EDT27978.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens CPE str.
F4969]
Length = 724
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/339 (22%), Positives = 139/339 (41%), Gaps = 93/339 (27%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK++D D+L +G+ KD+S K LIS+ Y+ Y+
Sbjct: 437 NKKIIDLGLDQLSTYGIMKDYSKEGLKDFINTLISHRYI------------------DYI 478
Query: 61 GS---ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
G R + +L N +++ E+ +K+ +N +L+ +L
Sbjct: 479 GEYPVVRLNQSSIDILKGNEKVMFKEK----------IKAKRVSKNN-------ELFDLL 521
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R+++A G PY + GD T+K++++ P +++L+ I GV + ++ +G+ L I
Sbjct: 522 RSLRREIALEEGVPPYIVFGDNTLKEMSVRIPVNESQLSEISGVGEKKILKYGEMFLNVI 581
Query: 178 RHLSQKLNLSL--------------------DGKVGEHTAFTRKLHVVVNTRTKLTPAKY 217
+ + N+ + +GK G+ +F + ++ T AK
Sbjct: 582 KEYVKVNNIEVKWESGLKINKDELEEKFKKSNGKDGKKKSFEITIDMLREGDKFHTIAK- 640
Query: 218 EAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEI 277
E LSI + ++ + YL E F+I++ D +
Sbjct: 641 -------ERELSITTVLSH-----------IQQYLEEGNKIDFEIDF----------DSL 672
Query: 278 FSAIQE-----AISKVGCKDKLKPIKNELPDDITYAHIK 311
FS +E AI VG KLKPIK L +D++Y I+
Sbjct: 673 FSKREEELVLDAIDNVGY-SKLKPIKENLEEDVSYEKIR 710
>gi|422302785|ref|ZP_16390144.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9806]
gi|389787941|emb|CCI16794.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9806]
Length = 703
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 130/316 (41%), Gaps = 60/316 (18%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+++ Q L +G+GKD + WK L+ L+ L ET +D +R + ++Q + +
Sbjct: 443 ERITQYQHHLLSTYGIGKDKTVGEWKRLSRSLVQQNLLVET-EDDFRILKLNQHSWEVMR 501
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
R + A + +GD +N E+D+ L+ L + R
Sbjct: 502 KQR-------------SVFIAVPQKAKGQILGD-------DNPNTLESDL-LFDRLRQLR 540
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
KK+A G PY + D +++ +A ++P + I GV V +GD + I
Sbjct: 541 KKIADSQGVPPYVIFHDSSLRLMAQSKPRNLGQFRQISGVVHSKVQQYGDIFIAAINDFC 600
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
Q SL P+ +++DGL+ ++IA R
Sbjct: 601 QD---SL-------------------------PSTQFLTLQYYQDGLNAEEIA----RKR 628
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNEL 301
+K T+ ++L + + G++I+ +L ++ I+ I K+G LK +K L
Sbjct: 629 SLKVSTIYEHLAKLLEAGYEIDINQL-----VSKNKQEYIRLVIKKLG-DQSLKTLKENL 682
Query: 302 PDDITYAHIKACLVME 317
D+ +Y IK + E
Sbjct: 683 GDNYSYEEIKLVVAWE 698
>gi|359413092|ref|ZP_09205557.1| ATP-dependent DNA helicase RecQ [Clostridium sp. DL-VIII]
gi|357171976|gb|EHJ00151.1| ATP-dependent DNA helicase RecQ [Clostridium sp. DL-VIII]
Length = 814
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 31/163 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV+ FD+L +GL K++S+ KT LIS+G++ I+ Y +S++++ + L
Sbjct: 438 NKKVLQFHFDELSTYGLMKEYSTEELKTFINTLISHGFIN-VIEGTYPVLSLNERSRNVL 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S E V+ +E + E D +L+ L
Sbjct: 497 TSK--------------EKVELKEFKV----------------EKKVREDNELFETLRAI 526
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQ 163
R++LAR G PY + GD T+K++A+ P T+ ++ I GV +
Sbjct: 527 RQELARENGVPPYIVFGDVTLKEMAINYPVTREKMLKISGVGE 569
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 25/226 (11%)
Query: 94 DLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKA 153
DLK L+ E D++LY++L RK+LA+ P A+ T+K+I+ P T
Sbjct: 605 DLKGKEDLKLE--VTTDLELYNILNNIRKELAKKENVLPQAILTMNTLKEISGRYPDTLE 662
Query: 154 RLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLT 213
+L +I G+ + +G+ L IR +++ L L+ H ++ V+++ T+
Sbjct: 663 KLKDISGMGPKKISEYGERL---IRAVNEYL---LENNKEIHWVERKRRKVILDGETR-- 714
Query: 214 PAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGL 273
+ A M E +SI ++ S V DY+ E F I+
Sbjct: 715 ESNQIAIDMLKEK-ISIHDVSEKIELSISTILGYVTDYIKEYGENIFTIDL--------- 764
Query: 274 TDEIFSAIQEAISKVGCK----DKLKPIKNELPDDITYAHIKACLV 315
DE ++ EA+ C+ DK+ IK ELP I Y I++ ++
Sbjct: 765 -DEFYNKEDEALIINACEKNGYDKINIIKRELPSYIKYESIRSVIL 809
>gi|296221953|ref|XP_002756974.1| PREDICTED: Werner syndrome ATP-dependent helicase [Callithrix
jacchus]
Length = 1433
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 86/367 (23%), Positives = 149/367 (40%), Gaps = 70/367 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQ 58
S+++ D Q+ + L G GKD + +WWK + QLI G+L + + ++++G+Q
Sbjct: 991 SQRLAD-QYRRHSLFGTGKDQTESWWKAFSRQLIVEGFLVDVSGHNKFVKICMLTEKGRQ 1049
Query: 59 YLGSARPDHQPPLLLTFNGEM----------------------------VDAEEH----- 85
+L A+ L+L N E+ + AE+
Sbjct: 1050 WLQKAKTSGSQSLVLQANEELCPKKFLLPSSSTVSSDTKQCSYNQVPVELTAEKKSNLEK 1109
Query: 86 -------ETISSNVGDLKSSATLEN-EGF------------SEADMQLYHMLLEERKKLA 125
+ ISS K S +++ E F E LY L+E R+K A
Sbjct: 1110 LYSYKPCDKISSGSNISKKSIMVQSLETFHSASEPVISAQEQETQTVLYGKLVEARQKQA 1169
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
P L ++ + +A RP+T A + IDGV++ LL+ I+H Q +
Sbjct: 1170 NKMDVPPAILATNKILVDMAKMRPTTVAYVKRIDGVSEGKAAMLAP-LLEVIKHFCQTNS 1228
Query: 186 LSLDGKVGEHTAFTRKLHVVV-NTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIK 244
+ D +K+ +V N L+ + + ++ E + ++ IA R P+
Sbjct: 1229 VQTDLFSTTKPQEEQKMSLVAKNKICTLSQSMAITYSLFQEKKMPLKSIAE--SRILPL- 1285
Query: 245 EQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK---DKLKPIKNEL 301
TV +L +AV G ++ R GLT E+ I + I K+ I+ +
Sbjct: 1286 -MTVGMHLSQAVRAGCPLDLER----AGLTPEVQKIIADVIRNPPINSDMSKINQIRMLV 1340
Query: 302 PDDI-TY 307
P++I TY
Sbjct: 1341 PENIDTY 1347
>gi|152978031|ref|YP_001343660.1| ATP-dependent DNA helicase RecQ [Actinobacillus succinogenes 130Z]
gi|150839754|gb|ABR73725.1| ATP-dependent DNA helicase RecQ [Actinobacillus succinogenes 130Z]
Length = 614
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 80/161 (49%), Gaps = 19/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D + D L ++G+GKD S +W+++ QLI G++ + + +V + +++ + L
Sbjct: 441 NQKIRDHRHDTLSVYGIGKDKSKEYWQSVIRQLIHLGFIRQVMNEVGVMLHLTESARAVL 500
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
GE+ + E + + + + A+ + + D L+ L
Sbjct: 501 ---------------RGEI----KLELATPRLSAIATVASPQRSAVTNYDKDLFARLRFL 541
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RKK+A PY + D T+++++L P++KA + I+GV
Sbjct: 542 RKKIAERENIPPYIVFSDATLQEMSLYLPTSKAEMLQINGV 582
>gi|427717685|ref|YP_007065679.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 7507]
gi|427350121|gb|AFY32845.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 7507]
Length = 720
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 132/312 (42%), Gaps = 46/312 (14%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ Q DKL +G+GKD + + W+ L L+ G L +T D Y + ++
Sbjct: 442 NQKITLNQHDKLSTYGIGKDKTVDDWRMLGRSLLHQGLLEQT-SDGYSVLKLN------- 493
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQ-LYHMLLE 119
+ E++ + +I+ V E A+M+ L L
Sbjct: 494 -------------ALSWEVMRRQRTVSIAVPVA---QKIAWEEGSAKAAEMEILLQRLRS 537
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
RK+LA PY + D T+K +A +P T + GV H + +GD L IR
Sbjct: 538 LRKQLADEQSVPPYVVFQDSTLKLMAQVQPKTITEFGKLSGVGSHKLAQYGDKFLAEIRA 597
Query: 180 LSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGR 239
Q+ G + T L + + + T+++ + H+ GLS+++IA +
Sbjct: 598 YRQE-----QGIIDPQDNSTPYLGLGLPSDTEISTFQL------HQQGLSVEEIA----Q 642
Query: 240 SAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKN 299
++ T++ +L++ + + ++ +L L E I + + +G L PIK
Sbjct: 643 KRNMRPTTIIRHLVDLIEKNQQVDLNKL-----LPLERQQKIWQVLEVLG-DISLVPIKE 696
Query: 300 ELPDDITYAHIK 311
+L + TY I+
Sbjct: 697 QLGESYTYDEIR 708
>gi|390448336|ref|ZP_10233957.1| ATP-dependent DNA helicase RecQ [Nitratireductor aquibiodomus RA22]
gi|389666305|gb|EIM77757.1| ATP-dependent DNA helicase RecQ [Nitratireductor aquibiodomus RA22]
Length = 600
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D++ +G+GK+H W+++ Q++++G++ + +S+S++G ++L +P
Sbjct: 445 DQISTYGIGKEHDQRTWRSILRQMVAHGFVDVDFSG-HGGLSISKRGARFL-----REKP 498
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
++L +SS + + AD +L+ L E+R ++AR
Sbjct: 499 TMMLRVPRPATKGRSR----------RSSGSEAASALAPADAELFKALREKRIEIARAQN 548
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D+T+ ++A ARP +++ +A I G+ + + +G+ L I
Sbjct: 549 LPPYVIFHDRTLIELATARPVSRSAMAGISGIGEAKLDRYGEAFLDVI 596
>gi|336115545|ref|YP_004570312.1| ATP-dependent DNA helicase RecQ [Bacillus coagulans 2-6]
gi|335368975|gb|AEH54926.1| ATP-dependent DNA helicase RecQ [Bacillus coagulans 2-6]
Length = 725
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 133/316 (42%), Gaps = 54/316 (17%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKD-VYRTVSVSQQGKQYL 60
+K+ FDKL G+ KD + L L + G+L KD Y + ++++ + L
Sbjct: 437 QKIRQFGFDKLSTFGIMKDKTQKEVAELIDFLTADGFLRA--KDGTYPVLMLTKKAVEVL 494
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S + F E V A++ T D L+ L
Sbjct: 495 LSKKQ--------VFRKESVRAQQIAT----------------------DNLLFEKLRTL 524
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK++A PY + DQ++++++ P T+ + GV + + + + IR
Sbjct: 525 RKEIADREKIPPYIVFSDQSLREMSARMPVTREAFLQVKGVGERKAEQYAELFMHVIRTY 584
Query: 181 SQKLNLSLDG--KVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPG 238
++ + K HT R+ + + K + + +++ E G +I++IA G
Sbjct: 585 MEEEGIQAQAQPKALSHTKKARE-----DGKEK---SHHVTYRLLQE-GKTIREIAEIRG 635
Query: 239 RSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIK 298
S E+T+ ++++ EGF + W+R E I +A S+ G +L PIK
Sbjct: 636 MS----ERTIETHVIKCSDEGFPVEWSRFIPE-----RYRERIADATSRAGT-GRLTPIK 685
Query: 299 NELPDDITYAHIKACL 314
LPD+++Y I+A L
Sbjct: 686 ELLPDEVSYFMIRAFL 701
>gi|304407435|ref|ZP_07389087.1| ATP-dependent DNA helicase RecQ [Paenibacillus curdlanolyticus YK9]
gi|304343386|gb|EFM09228.1| ATP-dependent DNA helicase RecQ [Paenibacillus curdlanolyticus YK9]
Length = 743
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 98/237 (41%), Gaps = 32/237 (13%)
Query: 100 TLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANID 159
T+ S A L+ L + RK A P+ L D T++++A A P T L +
Sbjct: 509 TVRKAASSAAGSPLFEALRDWRKAAAAREKVPPFMLFFDATLRELADAAPQTTEELLTVK 568
Query: 160 GVNQHLVITHGDHLLQTIRHL---------SQKLNLS-------------LDGKVGEHTA 197
G+ +G +L I+ Q+L + + G+ +
Sbjct: 569 GIGAAKANKYGAEVLAVIQPFISGEPISGSDQELAAASPAVLQHSMPVKPISGQPAAVKS 628
Query: 198 FTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVS 257
+ ++ ++ + +G I++IA + E TV +L+
Sbjct: 629 ASTASSSSSSSSNRIDSGSHLLSLEAFNEGADIKQIAA----ERELSEVTVEGHLIRGAL 684
Query: 258 EGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKACL 314
EG ++W R+ L E ++I EAI +VG DKLKPIK LPD +TY IKACL
Sbjct: 685 EGHPLDWERI-----LPAEYETSILEAIEQVG-GDKLKPIKEALPDSVTYLMIKACL 735
>gi|408674061|ref|YP_006873809.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
gi|387855685|gb|AFK03782.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
Length = 792
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 18/163 (11%)
Query: 18 GKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTFNG 77
K ++++W ++ Q++ GY+ + I++ Y V VS++G +++ + P
Sbjct: 517 NKRTANDYWVSILRQMMVLGYIEKDIENSYGVVRVSEKGHKFIEDSYP------------ 564
Query: 78 EMVDAEEHE---TISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYA 134
+ AE+H T SS+ D+ ++ + + G D L+ +L RKK+A+ PY
Sbjct: 565 -ITIAEDHNYENTESSDDDDITTNNS--SSGGGAFDAALFELLKALRKKIAKEKNVPPYV 621
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D +++++A P+T+ LA I+GV V G L I
Sbjct: 622 VFQDPSLEEMATTYPTTQQELAQINGVGMGKVQKFGKPFLDLI 664
>gi|383766435|ref|YP_005445416.1| ATP-dependent DNA helicase RecQ [Phycisphaera mikurensis NBRC
102666]
gi|381386703|dbj|BAM03519.1| ATP-dependent DNA helicase RecQ [Phycisphaera mikurensis NBRC
102666]
Length = 657
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 8/179 (4%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ KV++ + D L +HG+GKD W+ LA L+ G+L T D +R ++ K +
Sbjct: 484 AAKVLEREHDGLSVHGIGKDQPVGHWRALAEHLVQEGHLAFT-HDGFRVALLTATSKDVM 542
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEG-FSEADMQLYHMLLE 119
+ P+ L + VD S + K + S L+ L
Sbjct: 543 RG-----EVPVELAVS-RAVDPRAGGPESERMAQGKRRRAAAAQAELSPDAADLFEKLRA 596
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
R +LA G PY + GD T+ ++A RP + L I GV Q + +GD Q IR
Sbjct: 597 LRAELAEEQGVPPYIVFGDATLLEMATRRPQSDHELLAISGVGQTKLQRYGDPFRQAIR 655
>gi|110799107|ref|YP_694787.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens ATCC
13124]
gi|110673754|gb|ABG82741.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens ATCC
13124]
Length = 724
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 137/320 (42%), Gaps = 55/320 (17%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+++ D+L +G+ KD+S K LIS+ Y+ Y+
Sbjct: 437 NKKIIELGLDQLSTYGIMKDYSKEGLKDFINTLISHRYI------------------DYI 478
Query: 61 GS---ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
G R + +L N +++ E+ +K+ +N +L+ +L
Sbjct: 479 GEYPVVRLNQSSIDILKGNEKVMFKEK----------IKAKRVSKNN-------ELFDLL 521
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R+++A G PY + GD T+K++++ P +++L+ I GV + ++ +G+ L I
Sbjct: 522 RSLRREIALEEGVPPYIVFGDNTLKEMSVRIPVNESQLSEISGVGEKKILKYGEQFLNVI 581
Query: 178 RHLSQKLNLSLDGKVG-EHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANY 236
+ + N+ + + G + + +E +G IA
Sbjct: 582 KEYVKVNNIEVQWESGLKINKDELEEKFKKGNGKDGKKKSFEITIDMLREGDKFHTIA-- 639
Query: 237 PGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQE-----AISKVGCK 291
+ + TV+ ++ + + EG I++ E+ D +FS +E AI KVG
Sbjct: 640 --KERELSITTVLSHIQQYLEEGNKIDF-----EIDF-DSLFSKREEELVLDAIDKVGY- 690
Query: 292 DKLKPIKNELPDDITYAHIK 311
KLKPIK L +D++Y I+
Sbjct: 691 SKLKPIKENLEEDVSYEKIR 710
>gi|392959946|ref|ZP_10325423.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans DSM 17108]
gi|421053587|ref|ZP_15516563.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans B4]
gi|421058239|ref|ZP_15520955.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans B3]
gi|421071053|ref|ZP_15532176.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans A11]
gi|392442012|gb|EIW19625.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans B4]
gi|392447400|gb|EIW24641.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans A11]
gi|392455915|gb|EIW32686.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans DSM 17108]
gi|392461208|gb|EIW37428.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans B3]
Length = 707
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 102/215 (47%), Gaps = 29/215 (13%)
Query: 109 ADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVIT 168
AD L+ +L RK +A PY + D T+K+++ P++ L I GV +
Sbjct: 516 ADNSLFSLLRSLRKTIADREQIPPYLVFADSTLKEMSEYCPTSYDALLTIKGVGESKRKR 575
Query: 169 HGDHLLQTIRHLS-----QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMW 223
+GD L+ ++ + Q NLS++ K + + +P+ + +++
Sbjct: 576 YGDEFLEVLQQYALANNIQSSNLSIESKEAA-------------VKVQESPSHVISLELY 622
Query: 224 HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQE 283
+ G S+++I+ + +K T+ D+L+ EG +NW L + + I
Sbjct: 623 QK-GHSLEEIS----QMRKLKSLTIQDHLVRCYQEGHPVNWDAL-----IPPQYEKLILS 672
Query: 284 AISKVGCKDKLKPIKNELPDDITYAHIKACLVMEN 318
I+++G ++LK +K+ LP++I YA IKA L N
Sbjct: 673 KIAQLGA-ERLKILKDALPEEIDYAAIKAVLCKHN 706
>gi|421074731|ref|ZP_15535756.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans JBW45]
gi|392527173|gb|EIW50274.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans JBW45]
Length = 707
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 102/215 (47%), Gaps = 29/215 (13%)
Query: 109 ADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVIT 168
AD L+ +L RK +A PY + D T+K+++ P++ L I GV +
Sbjct: 516 ADNSLFSLLRSLRKTIADREQIPPYLVFADSTLKEMSEYCPTSYDALLTIKGVGESKRKR 575
Query: 169 HGDHLLQTIRHLS-----QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMW 223
+GD L+ ++ + Q NLS++ K + + +P+ + +++
Sbjct: 576 YGDEFLEVLQQYALANNIQSSNLSIESKEAA-------------VKVQESPSHVISLELY 622
Query: 224 HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQE 283
+ G S+++I+ + +K T+ D+L+ EG +NW L + + I
Sbjct: 623 QK-GHSLEEIS----QMRKLKSLTIQDHLVRCYQEGHPVNWDAL-----IPPQYEKLILS 672
Query: 284 AISKVGCKDKLKPIKNELPDDITYAHIKACLVMEN 318
I+++G ++LK +K+ LP++I YA IKA L N
Sbjct: 673 KIAQLGA-ERLKILKDALPEEIDYAAIKAVLCKHN 706
>gi|354566185|ref|ZP_08985358.1| ATP-dependent DNA helicase RecQ [Fischerella sp. JSC-11]
gi|353546693|gb|EHC16141.1| ATP-dependent DNA helicase RecQ [Fischerella sp. JSC-11]
Length = 719
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 129/313 (41%), Gaps = 50/313 (15%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ + DKL +G+GKD S W+ L L+ G L E D Y + ++
Sbjct: 442 TQKIAQYEHDKLSTYGIGKDKSVEEWRMLGRSLLHQG-LIEQSTDGYAVLKLN------- 493
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ E++ + +I V K + +N EA+M L L
Sbjct: 494 -------------ALSWEVMRRQRTVSIPVTVTQ-KLTWKEDNAKTVEAEM-LLQRLRSL 538
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA PY + D T+K +A +P TK + + GV H + +GD + IR
Sbjct: 539 RKQLADEQSVPPYVIFADSTLKLMAQVKPQTKDAFSRLSGVGSHKLNQYGDKFIAEIRAY 598
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWK--MWHEDGLSIQKIANYPG 238
Q EH A KL N + LT A + + ++ GLS+ +IA
Sbjct: 599 CQ-----------EHNAQEPKL----NPTSSLTSVSATALQTLLLYQQGLSVSEIAE--- 640
Query: 239 RSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIK 298
++ T+ +L + + + I+ L V L + I + + +G L PIK
Sbjct: 641 -KRNLRPTTIFSHLCDLIEKNQPIDINHL---VPLEKQ--QKILQVLEILG-DIALTPIK 693
Query: 299 NELPDDITYAHIK 311
L D+ ++ I+
Sbjct: 694 EYLGDNYSFEEIR 706
>gi|148826626|ref|YP_001291379.1| prolyl-tRNA synthetase [Haemophilus influenzae PittEE]
gi|148716786|gb|ABQ98996.1| prolyl-tRNA synthetase [Haemophilus influenzae PittEE]
Length = 615
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q DKL ++G+GKD S W+++ QLI G++ + I ++ T+ +++ K
Sbjct: 447 NQKIIELQHDKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVISELNPTLQLTESAK--- 503
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDL-KSSATLENEGFSEADMQLYHMLLE 119
+ GE EE E + + K + + +G + D L+ L
Sbjct: 504 ------------VILKGE----EELELAMPRISSISKIAHNPQRQGVANYDKDLFARLRF 547
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P++ + I+GV
Sbjct: 548 LRKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGV 589
>gi|28211708|ref|NP_782652.1| ATP-dependent DNA helicase RecQ [Clostridium tetani E88]
gi|28204150|gb|AAO36589.1| ATP-dependent DNA helicase recQ [Clostridium tetani E88]
Length = 706
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 136/312 (43%), Gaps = 53/312 (16%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV++A ++L +G+ + + +L +LI+ GYL T D + V + + L
Sbjct: 439 NKKVLNAGLNRLSTYGIMSEFTQKQISSLINKLIADGYLV-TTDDKFPVVKLQARANNVL 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ P + + + S+ D +L +L +
Sbjct: 498 KNKEPVY------------------------------IKITKTKKISKPDNELLEILKDI 527
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK++++ G P+ + D T+K+++ P I GV + +G+ + I
Sbjct: 528 RKEISQEAGIPPFMIFHDITLKELSEYMPKDMENFLKIKGVGEKKAEVYGEKFISAICDY 587
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
+++ N++ K E +K ++ K Y +K +G +I++I+ +
Sbjct: 588 TKEKNIT--AKSNEEYDMNKK------SKEKTHVITYNLYK----EGKNIKEIS----KE 631
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
++ T+ ++L + ++E DIN L + + I +AI K+G KLKPIK+
Sbjct: 632 RNLQTSTIEEHLFKCLNEDMDINIDDL-----IKKDYEKIILDAIKKIGG-SKLKPIKDA 685
Query: 301 LPDDITYAHIKA 312
LP+++ Y IK+
Sbjct: 686 LPEEVDYMSIKS 697
>gi|332289590|ref|YP_004420442.1| ATP-dependent DNA helicase RecQ [Gallibacterium anatis UMN179]
gi|330432486|gb|AEC17545.1| ATP-dependent DNA helicase RecQ [Gallibacterium anatis UMN179]
Length = 613
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 91/184 (49%), Gaps = 22/184 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ + Q DKL + G+GKD S +W ++ QLI G+L++ I + Y + +++
Sbjct: 450 NQKIQELQHDKLSVFGIGKDKSQEYWHSVIRQLIHLGFLSQNIAN-YSALQLTE------ 502
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GEM + T N+ + + + + + D +L++ L +
Sbjct: 503 -AARP--------ILRGEMTLS--LATPRQNLSMINHAHHYQAQ---QGDRELFNQLRKL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI-RH 179
RK+L+ PYA+ D T++++A P+T + + I+GV + + L I R+
Sbjct: 549 RKQLSDRDNIPPYAVFNDATLEEMAREMPTTLSEMLQINGVGFKKLERYAQPFLAVILRY 608
Query: 180 LSQK 183
L K
Sbjct: 609 LENK 612
>gi|350565839|ref|ZP_08934569.1| ATP-dependent helicase RecQ [Peptoniphilus indolicus ATCC 29427]
gi|348663378|gb|EGY79961.1| ATP-dependent helicase RecQ [Peptoniphilus indolicus ATCC 29427]
Length = 711
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 133/313 (42%), Gaps = 38/313 (12%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
KV++ FDKL +G+ + S + K + +LIS YL + +R + +++ L
Sbjct: 431 KVLNWNFDKLSTYGIMNNLSRDEIKNIISKLISDKYL---VLGRHRELRLTKSSVNLL-- 485
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
GE EE I + ++ E S D +L+ L R
Sbjct: 486 -------------QGE----EEFYMIKKKTPKANNKTSIIKENLSSIDAELFENLRYLRN 528
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQ 182
+A PY + + +K +A+ +P T + G + + +G L+ I +
Sbjct: 529 SIAEEENVPPYVILHNSHLKNLAIMKPQTMREFKEMPGFGETKIRKYGKRFLELILDFVK 588
Query: 183 KLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAP 242
++L+ K ++ + + K ++ M ++G+SI++IA
Sbjct: 589 DVDLT-QNKYDNYSIPQEN-----SIKKKSFSNSFKRSAMLFKEGMSIEEIA----IQRN 638
Query: 243 IKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELP 302
I +TV+ +L A G+ N D+ + +EIF AI+ ++G KLKPIK +
Sbjct: 639 ITSETVLKHLDIAQKTGYLENINFNLDK-NVRNEIFKAIE----RLGY-SKLKPIKEAVN 692
Query: 303 DDITYAHIKACLV 315
++I+Y IK ++
Sbjct: 693 ENISYNQIKMAVI 705
>gi|395801803|ref|ZP_10481058.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. F52]
gi|395435992|gb|EJG01931.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. F52]
Length = 731
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 21/216 (9%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
G G DH +W L Q++ G L++ I + Y + ++++G ++ +P +++
Sbjct: 461 GSGSDHDEKYWMALLRQVLVTGLLSKDI-ETYGVIKITKEGLDFI--KKP---VSFMMSE 514
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
+ E +A++ ++ KSS T AD L ML E RKK+A+ G P+ +
Sbjct: 515 DHEYTEADDETIVTGG----KSSGT--------ADEVLTGMLRELRKKVAKKLGVPPFVV 562
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI-RHLSQKLNLSLDGKVGE 194
D +I+ +AL P T L NI GV + +G + I R++ + D V +
Sbjct: 563 FQDPSIEDMALKYPITIQELYNIHGVGEGKAKKYGSEFVALISRYVEDNDIIRPDDLVVK 622
Query: 195 HTAF--TRKLHVVVNTRTKLTPAKYEAWKMWHEDGL 228
T KL+++ N KL + + K D L
Sbjct: 623 STGVNSANKLYIIQNIDRKLPLSDIASAKGLTMDAL 658
>gi|169344035|ref|ZP_02865023.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens C str.
JGS1495]
gi|169297770|gb|EDS79867.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens C str.
JGS1495]
Length = 724
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 138/320 (43%), Gaps = 55/320 (17%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+++ D+L +G+ KD+S K LIS+ Y+ Y+
Sbjct: 437 NKKIIELGLDQLSTYGIMKDYSKEGLKDFINTLISHRYI------------------DYI 478
Query: 61 GS---ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
G R + +L N +++ E+ +K+ + +N +L+ +L
Sbjct: 479 GEYPVVRLNQSSIDILKGNEKVMFKEK----------IKAKSVSKNN-------ELFDLL 521
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R+++A G PY + GD T+K++++ P +++L+ I GV + ++ +G+ L I
Sbjct: 522 RSLRREIASEEGIPPYIVFGDNTLKEMSVRIPVNESQLSEISGVGEKKILKYGELFLNVI 581
Query: 178 RHLSQKLNLSLDGKVG-EHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANY 236
+ + N+ + + G + + +E +G IA
Sbjct: 582 KEYVKVNNIEVKWESGLKINKDELEEKFKKGNGKDGKKKSFEITIDMLREGDKFHTIA-- 639
Query: 237 PGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQE-----AISKVGCK 291
+ + TV+ ++ + + EG I++ E+ D +FS +E AI KVG
Sbjct: 640 --KERELSITTVLSHIQQYLEEGNKIDF-----EIDF-DSLFSKREEELVLDAIDKVGY- 690
Query: 292 DKLKPIKNELPDDITYAHIK 311
KLKPIK L +D++Y I+
Sbjct: 691 SKLKPIKENLEEDVSYEKIR 710
>gi|218438410|ref|YP_002376739.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 7424]
gi|218171138|gb|ACK69871.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 7424]
Length = 709
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 123/303 (40%), Gaps = 60/303 (19%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
+G+GKD + WK L LI G + ET D P L L
Sbjct: 457 YGIGKDRTVPEWKNLGRSLIHQGLVDETT----------------------DGLPVLKLN 494
Query: 75 -FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
+ E++ + I+ ++ N +E +M L L + RK LA APY
Sbjct: 495 KLSWEILRKQRSVEIAVARKSAETVIGKYNPRKAETEM-LLDRLRQLRKYLADANSVAPY 553
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVG 193
+ D ++K +A +P T ANI GV H + +G+ + IR Q+
Sbjct: 554 VVFSDSSLKLMAEKKPQTLPDFANISGVTAHKLSQYGERFISEIRDFCQE---------- 603
Query: 194 EHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYL- 252
++L V + T++ + ++ GL+I++IA +K T+ ++
Sbjct: 604 ------QELPVALPNNTQMITLQ------LYQQGLTIEEIAE----QRKLKPSTIYEHFS 647
Query: 253 -LEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIK 311
L A ++ DIN L + L I +AI K G LK +K L D+I+Y I+
Sbjct: 648 NLIATNQPVDINQFILPVKQEL-------IIQAIKKHGATS-LKTLKENLGDNISYGEIR 699
Query: 312 ACL 314
L
Sbjct: 700 LVL 702
>gi|205372644|ref|ZP_03225455.1| ATP-dependent DNA helicase [Bacillus coahuilensis m4-4]
Length = 484
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 31/213 (14%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
+ +L+ L RKKLA G PY + D T+K++A P+++ ++ +I GV + +
Sbjct: 291 NQELFERLRGARKKLADEKGVPPYVVFSDATLKELARYIPTSRDKMLHIKGVGERKLDQF 350
Query: 170 GDHLLQTIR-------HLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKM 222
G+ L + H K SL E RK H+ ++A+
Sbjct: 351 GEVFLDILLDFTKEHPHEPSKATASLPLSDKEARKNERKSHL----------QSFDAF-- 398
Query: 223 WHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQ 282
+ G +I++IA G SA T+ ++L +A SEG ++ + + E+ +A
Sbjct: 399 --QSGQTIKEIAKARGLSAV----TIENHLFKAYSEGEPLDLSSFYS-AQMEQEVLTAYD 451
Query: 283 EAISKVGCKDKLKPIKNELPDDITYAHIKACLV 315
+ K KLKPIK ++ ++I Y IKA LV
Sbjct: 452 QVEEK-----KLKPIKEKVSEEIGYTAIKAILV 479
>gi|291569161|dbj|BAI91433.1| ATP-dependent DNA helicase [Arthrospira platensis NIES-39]
Length = 739
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 135/326 (41%), Gaps = 39/326 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+++VV DKL + +G+D + + WK LA L+ G L +T D Y + ++ + +
Sbjct: 450 NQRVVSRGHDKLSTYNIGRDRTVDEWKMLARSLLHQGLLDQT-NDGYSILKLNNLSWEVM 508
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R + D + + S D+K M L H L +
Sbjct: 509 KRQRE--------VKIAVVRDRQLPQQTWSMAADVK--------------MLLEH-LRQV 545
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK++A APY + D T+ +A RP TK L + GV + ++G L I
Sbjct: 546 RKQIADQNDIAPYKIFSDSTLGLMARERPQTKEDLLRLSGVTAYKAQSYGQQFLNAIYEY 605
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
+ + L T V+ ++P + W+++ + GLS+Q+IA+ G
Sbjct: 606 CLEQGIPLKPT---KPPLTTLSSSSVSKWYHVSPTVIQTWELFKQ-GLSVQEIADQRG-- 659
Query: 241 APIKEQTVVDYLLEAVSEGF-DINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKN 299
+K T+ +L + ++ + DI+ L ++ E I EAI+ +G L PI
Sbjct: 660 --LKSTTIYGHLADLIANNYGDIDIDTL-----ISPERKQVILEAIAVLG-DGPLTPIYE 711
Query: 300 ELPDDITYAHIKACLVMENCGISPEV 325
L Y I+ + SP++
Sbjct: 712 YLGKAYNYGEIRLVQALWRSQNSPDI 737
>gi|336171234|ref|YP_004578372.1| RecQ family ATP-dependent DNA helicase [Lacinutrix sp. 5H-3-7-4]
gi|334725806|gb|AEG99943.1| ATP-dependent DNA helicase, RecQ family [Lacinutrix sp. 5H-3-7-4]
Length = 730
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 17/164 (10%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
G GK H ++W L Q+I GYL + I + Y V ++++GK +L S P+
Sbjct: 457 FFGNGKHHPKSFWMALLRQVIVAGYLKKDI-ETYGVVKITEKGKAFLES-------PISF 508
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
+ E H+ T E G + D L ML + RKK A+ G P+
Sbjct: 509 MMTEDHTYDENHDD---------HIITAEKGGGAVVDDTLMKMLKDLRKKNAKKLGVPPF 559
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D +++ +AL P + A L+N+ GV + +G + I
Sbjct: 560 VIFQDPSLEDMALKYPVSIAELSNVHGVGEGKAKKYGKDFVALI 603
>gi|422347219|ref|ZP_16428132.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens WAL-14572]
gi|373225131|gb|EHP47466.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens WAL-14572]
Length = 724
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 137/320 (42%), Gaps = 55/320 (17%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+++ D+L +G+ KD+S K LIS+ Y+ Y+
Sbjct: 437 NKKIIELGLDQLSTYGIMKDYSKEGLKDFINTLISHRYI------------------DYI 478
Query: 61 GS---ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
G R + +L N +++ E+ +K+ +N +L+ +L
Sbjct: 479 GEYPVVRLNQSSIDILKGNEKVMFKEK----------IKAKRVSKNN-------ELFDLL 521
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R+++A G PY + GD T+K++++ P +++L+ I GV + ++ +G+ L I
Sbjct: 522 RSLRREIASEEGVPPYIVFGDNTLKEMSVRIPVNESQLSEISGVGEKKILKYGELFLNVI 581
Query: 178 RHLSQKLNLSLDGKVG-EHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANY 236
+ + N+ + + G + + +E +G IA
Sbjct: 582 KEYVKVNNIEIKWESGLKINKDELEEKFKKGNGKDGKKKSFEITIDMLREGDKFHTIA-- 639
Query: 237 PGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQE-----AISKVGCK 291
+ + TV+ ++ + + EG I++ E+ D +FS +E AI KVG
Sbjct: 640 --KERELSITTVLSHIQQYLEEGNKIDF-----EIDF-DSLFSKREEELVLDAIDKVGY- 690
Query: 292 DKLKPIKNELPDDITYAHIK 311
KLKPIK L +D++Y I+
Sbjct: 691 SKLKPIKENLEEDVSYEKIR 710
>gi|311032873|ref|ZP_07710963.1| ATP-dependent DNA helicase RecQ [Bacillus sp. m3-13]
Length = 715
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 99/207 (47%), Gaps = 15/207 (7%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D +L+ ML E R+ L++ G PY + D T+++++ P ++ + +I GV +
Sbjct: 516 DNELFEMLRELRRNLSKEEGVPPYVIFSDSTLREMSEVLPKDESAMMDIKGVGSLKFEKY 575
Query: 170 GDHLLQTI-RHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGL 228
G+ L+ I R + + ++ + + A T+K+ V + +++ E+G+
Sbjct: 576 GELFLREIGRFMGEDVS---NTNPVKKEATTKKVKKPVIPMNPGETSHMFTYRLLQEEGM 632
Query: 229 SIQKIANYPGRSAPIKEQTVVDYLLEAVS-EGFDINWTRLCDEVGLTDEIFSAIQEAISK 287
+ ++IA + + T+ ++L + S EG +++W + + + +
Sbjct: 633 TFKEIA----KERDMSLITIQNHLFKCASDEGVEVDWD------SFIPKDYEEEIIKVIE 682
Query: 288 VGCKDKLKPIKNELPDDITYAHIKACL 314
+KLKPIK LPD++ Y IKA +
Sbjct: 683 EVGTEKLKPIKENLPDEVDYIAIKAVM 709
>gi|168204477|ref|ZP_02630482.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens E str.
JGS1987]
gi|170664063|gb|EDT16746.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens E str.
JGS1987]
Length = 724
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 75/339 (22%), Positives = 139/339 (41%), Gaps = 93/339 (27%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+++ D+L +G+ KD+S K LIS+ Y+ Y+
Sbjct: 437 NKKIIELGLDQLSTYGIMKDYSKEGLKDFINTLISHRYI------------------DYI 478
Query: 61 GS---ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
G R + +L N +++ E+ +K+ +N +L+ +L
Sbjct: 479 GEYPVVRLNQSSIDILKGNEKVMFKEK----------IKAKRVSKNN-------ELFDLL 521
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R+++A G PY + GD T+K++++ P +++L+ I GV + ++ +G+ L I
Sbjct: 522 RSLRREIASEEGVPPYIVFGDNTLKEMSVRIPVNESQLSEISGVGEKKILKYGELFLNVI 581
Query: 178 RHLSQKLNLSL--------------------DGKVGEHTAFTRKLHVVVNTRTKLTPAKY 217
+ + N+ + +GK G+ +F + ++ T AK
Sbjct: 582 KEYVKVNNIEVKWESGLKINKDELEEKFKKSNGKDGKKKSFEITIDMLREGEKFHTIAK- 640
Query: 218 EAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEI 277
E LSI + ++ + YL E F+I++ D +
Sbjct: 641 -------ERELSITTVLSH-----------IQQYLEEGNKIDFEIDF----------DSL 672
Query: 278 FSAIQE-----AISKVGCKDKLKPIKNELPDDITYAHIK 311
FS +E I KVG KLKPIK L +D++Y I+
Sbjct: 673 FSKREEELVLDTIDKVGY-SKLKPIKENLEEDVSYEKIR 710
>gi|325291508|ref|YP_004277372.1| DNA helicase [Agrobacterium sp. H13-3]
gi|325059361|gb|ADY63052.1| DNA helicase [Agrobacterium sp. H13-3]
Length = 597
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D++ +G+GK+H + W+ + Q+++ L E + +S+S++G+++L +P
Sbjct: 440 DRITTYGIGKEHDNRTWRAILRQMVAL-RLIEVDLAGHGGLSISEEGRRFL-----REKP 493
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
L+L A + + K +A + +AD L+ L +R ++AR
Sbjct: 494 SLMLRIPTAPRSARQQT-------NRKPTAIV----LPDADRSLFEALRAKRMEIARAQN 542
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D+T+ ++A ARP++ +A I GV + +G L I
Sbjct: 543 VPPYVIFHDKTLIELAAARPASVGEMAQIPGVGDTKLERYGPAFLAAI 590
>gi|398825380|ref|ZP_10583678.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. YR681]
gi|398223762|gb|EJN10096.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. YR681]
Length = 621
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 10/178 (5%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV DKL + G+G++ + W+T+ QL++ GYL ++ + Y + +++ +
Sbjct: 452 TEKVTQFGHDKLSVFGIGRELNEKQWRTVLRQLVAMGYL-QSDSEAYGALKLTETAR--- 507
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
G R + + L G + + + S GDL +A N + D +L L
Sbjct: 508 GVLRGETEVWLREEAPGTRIRSSRAK---SRRGDLAPAA---NAPQGDVDPELRARLRSW 561
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
R +AR G Y + D TI I A P+T L N+ G+ + +GD LLQ +R
Sbjct: 562 RSDIARERGVPAYVVLHDATIDGIVRAWPTTLDELRNVPGIGDKKLEHYGDELLQIVR 619
>gi|302874440|ref|YP_003843073.1| ATP-dependent DNA helicase RecQ [Clostridium cellulovorans 743B]
gi|307690953|ref|ZP_07633399.1| ATP-dependent DNA helicase RecQ [Clostridium cellulovorans 743B]
gi|302577297|gb|ADL51309.1| ATP-dependent DNA helicase RecQ [Clostridium cellulovorans 743B]
Length = 741
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 141/334 (42%), Gaps = 63/334 (18%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTE-TIKDVYRTVSVSQQGKQYLGSARPDHQ 68
+K+L GLG + YG ++E TIKD+ +++ Y+ +
Sbjct: 440 EKILTQGLGTQST-------------YGIMSEKTIKDITDIINI-LVADGYINVTESEF- 484
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
P L ++ G + + E + A ++ + D +L+ +L + R ++A+
Sbjct: 485 PTLKVSNRGILALKNKEE--------VYIRAKIKTTKIVKEDSELFDILKKLRFEIAKEE 536
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN--- 185
Y + D +K+I+ P +K L I GV + +GD + I+ +K N
Sbjct: 537 RVPSYIIFADTCLKEISSYMPQSKEELLQIKGVGERKYEKYGDRFIAVIKEYIEKNNIDV 596
Query: 186 --LSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWH-------EDGLSIQKIANY 236
L+L + E N +++ K E K H +G S++ I+
Sbjct: 597 QSLNLADESDEE-----------NFKSETEQGKAEEKKKTHLVSMELYNEGNSLENISKI 645
Query: 237 PGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKP 296
S EQ +++ EG++I+ +L + E + I +AI VG +KLKP
Sbjct: 646 RSISVNTAEQ----HIILCYEEGYNIDINKL-----VQLEYKNQILDAIKDVG-DEKLKP 695
Query: 297 IKNELPDDITYAHIKACLVME------NCGISPE 324
IK LP+++TY IKA L E N I+P+
Sbjct: 696 IKAMLPEEVTYTSIKAVLAEERRMANGNININPK 729
>gi|409124316|ref|ZP_11223711.1| ATP-dependent DNA helicase RecQ [Gillisia sp. CBA3202]
Length = 731
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 94/202 (46%), Gaps = 22/202 (10%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
L G GK S +W L Q++ G L + I + Y V ++++GK ++ + P +
Sbjct: 460 LFGKGKGQDSQYWTALVRQVLVAGMLKKDI-ETYGVVRITEKGKDFIKN------PSSFM 512
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
+ D ++ ++ + G+ ++AD+QL +L E RKK+A+ P+
Sbjct: 513 MTEDHIYDFDQDDSNTPKGGN------------ADADIQLVKILKELRKKVAKKQNVPPF 560
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN-LSLDGKV 192
+ D +I+ +AL P + L+NI GV + G ++ I + ++ + + D V
Sbjct: 561 VVFQDPSIQDMALKYPISIDELSNIHGVGEGKAKKFGKEFVEVISNYVEENDIIRPDDFV 620
Query: 193 GEHTAFTR--KLHVVVNTRTKL 212
+ T KL+++ N KL
Sbjct: 621 VKSTGANSGLKLYIIQNVDRKL 642
>gi|124004539|ref|ZP_01689384.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
gi|123990111|gb|EAY29625.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
Length = 728
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 14/168 (8%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
+KL + G + +W+++ Q++ Y +L + I D + V V+Q+G +L S ++
Sbjct: 448 NKLDVFAKGSHKDAAYWRSVIRQILLYNFLEKDI-DNFGVVKVAQKGHDFLASP---YKV 503
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
L + V EE + D + T+ + + D L+ ML R+K+A+ G
Sbjct: 504 MLSEDHDYSKVTTEEED-------DREMGNTVNTKAY---DPVLFEMLKNLRRKVAKEKG 553
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D ++++IA P+TK LA I+GV + V G ++ I
Sbjct: 554 FPPYVIFQDPSLEEIATTYPTTKEELAQINGVGRGKVEKFGRQFIELI 601
>gi|409992245|ref|ZP_11275447.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis str. Paraca]
gi|409936909|gb|EKN78371.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis str. Paraca]
Length = 739
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 135/326 (41%), Gaps = 39/326 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+++V+ DKL + +G+D + + WK LA L+ G L +T D Y + ++ + +
Sbjct: 450 NQRVLSRGHDKLSTYNIGRDRTVDEWKMLARSLLHQGLLDQT-NDGYSILKLNNLSWEVM 508
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R + D + + S D+K M L H L +
Sbjct: 509 KRQRE--------VKIAVVRDRQLPQQTWSMAADVK--------------MLLEH-LRQV 545
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK++A APY + D T+ +A RP TK L + GV + ++G L I
Sbjct: 546 RKQIADQNDIAPYKIFSDSTLGLMARERPQTKEALLRLSGVTTYKAQSYGQQFLNAIYEY 605
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
+ + L T V+ ++P + W+++ + GLS+Q+IA+ G
Sbjct: 606 CLEQGIPLKST---KPPLTTLSSSSVSKWYHVSPTVIQTWELFKQ-GLSVQEIADQRG-- 659
Query: 241 APIKEQTVVDYLLEAVSEGF-DINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKN 299
+K T+ +L + ++ + DI+ L ++ E I EAI+ +G L PI
Sbjct: 660 --LKSTTIYGHLADLIANNYGDIDIDTL-----ISPERKQVILEAIAVLG-DGPLTPIYE 711
Query: 300 ELPDDITYAHIKACLVMENCGISPEV 325
L Y I+ + SP++
Sbjct: 712 YLGKAYNYGEIRLVQALWRSQNSPDI 737
>gi|407776561|ref|ZP_11123834.1| ATP-dependent DNA helicase RecQ [Nitratireductor pacificus pht-3B]
gi|407301852|gb|EKF20971.1| ATP-dependent DNA helicase RecQ [Nitratireductor pacificus pht-3B]
Length = 604
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D++ G+GK+H W+++ QLI++G++ + + +S+++ G+++L +P
Sbjct: 445 DRISTFGIGKEHDQRTWRSILRQLIAHGFIHVDLAG-HGGLSIAEAGRRFL-----REKP 498
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
L+L + V + D L++ L ++R ++AR
Sbjct: 499 VLMLRTPPPAAKGRKGRAARGGV----------PVSLDQTDSALFNALRDKRIEIAREQN 548
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D+T+ ++A RP+ +A +A I G+ + + +G+ L I
Sbjct: 549 LPPYVIFHDKTLIEMARTRPANRADMAGISGIGEAKLDRYGEAFLAVI 596
>gi|418299072|ref|ZP_12910907.1| ATP-dependent DNA helicase RecQ [Agrobacterium tumefaciens
CCNWGS0286]
gi|355535366|gb|EHH04654.1| ATP-dependent DNA helicase RecQ [Agrobacterium tumefaciens
CCNWGS0286]
Length = 602
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D++ +G+GK+H + W+ + QL++ + E + +S+S+ G+++L +P
Sbjct: 445 DRITTYGIGKEHDNRTWRAILRQLVAL-RMIEVDLSGHGGLSISEDGRRFL-----REKP 498
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
L+L A + +T + V + EAD L+ L +R ++AR
Sbjct: 499 ALMLRIQSAPRSARQ-QTPRNTVSTI----------LPEADRSLFEALRAKRMEIARAQN 547
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D+T+ ++A A+P + +A I GV + +G L I
Sbjct: 548 VPPYVIFHDKTLIELATAKPVSAKEMAGIPGVGDTKLERYGPAFLAAI 595
>gi|424842508|ref|ZP_18267133.1| ATP-dependent DNA helicase RecQ [Saprospira grandis DSM 2844]
gi|395320706|gb|EJF53627.1| ATP-dependent DNA helicase RecQ [Saprospira grandis DSM 2844]
Length = 737
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 93/187 (49%), Gaps = 19/187 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++ ++D +++K L G GKD ++W ++ Q + YL + I+D Y + V++ G +L
Sbjct: 450 TQSILDFKYEKHKLFGKGKDKDRHYWNSVLRQGLLNDYLKKDIED-YGILRVAEAGHDFL 508
Query: 61 GSARPDH-QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
+P + L F EM D EE + +S+TL D QL +LL+
Sbjct: 509 --IQPQFFEMSLNHNFAQEMQDMEEER-------EQNASSTL--------DPQLLKILLD 551
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
RK++AR P+ + +++++A P T + NI GV++ +G + L +I+
Sbjct: 552 LRKQVARKKNVPPFVVFQKVSLEEMATQYPFTIEEMKNIAGVSEGKARRYGRNFLASIKD 611
Query: 180 LSQKLNL 186
++ N+
Sbjct: 612 YVEENNI 618
>gi|167751826|ref|ZP_02423953.1| hypothetical protein ALIPUT_00068 [Alistipes putredinis DSM 17216]
gi|167660067|gb|EDS04197.1| ATP-dependent DNA helicase RecQ [Alistipes putredinis DSM 17216]
Length = 730
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
G G DH +W + Q + G + + I++ Y +S++ +G++++ + R P+ +T
Sbjct: 458 GAGADHDIRYWGAVIRQALIMGLIDKNIEN-YGLLSINAKGEEFIAAPR-----PVYITL 511
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
+ + D EE ET A AD +L+ ML + RKK+AR P+ +
Sbjct: 512 DHDY-DEEEKET----------DAVAPTGKGGAADEELFSMLKDLRKKVARQHDLPPFVI 560
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
D +++ +A+ P T + NI GV G+ ++ IR
Sbjct: 561 FQDPSLEDMAIQYPITIEEMQNISGVGVGKARKFGEEFIRLIR 603
>gi|345022486|ref|ZP_08786099.1| ATP-dependent DNA helicase [Ornithinibacillus scapharcae TW25]
Length = 714
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 96/211 (45%), Gaps = 31/211 (14%)
Query: 113 LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDH 172
L+ L RK LA PY L D T+K+++ P +K + I G+ + +G+
Sbjct: 522 LFEELRSLRKSLANELNVPPYVLFSDVTLKELSRYFPVSKGDMLEIKGIGEKKFEQYGEA 581
Query: 173 LLQTIR-----HLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDG 227
+ I+ H K + + G G T +K + + P+ ++K++ + G
Sbjct: 582 FIAVIQKWRLAHPEAKTRIKISG--GAPTPRHKK-------KEEEGPSHLVSYKLF-QSG 631
Query: 228 LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDE---IFSAIQEA 284
S++ IA + TV ++L +A +G+ I+W + TDE I A +E
Sbjct: 632 KSLKDIAAIRDMTT----MTVENHLFKAFQDGYPISWN-----IFFTDEEEKIILAARET 682
Query: 285 ISKVGCKDKLKPIKNELPDDITYAHIKACLV 315
+ + KLKP+K LP++ Y IKA LV
Sbjct: 683 VE----EPKLKPLKEALPEEYDYTKIKAVLV 709
>gi|441498157|ref|ZP_20980358.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
gi|441438064|gb|ELR71407.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
Length = 728
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 16/166 (9%)
Query: 12 LLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPL 71
L ++G G + S ++WK++ Q + Y L + I ++ + VS +G+++L + P
Sbjct: 451 LDIYGNGNEESGDFWKSVVRQSLIYELLEKDIDNI-GVLKVSAKGREFLNN-------PY 502
Query: 72 LLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTA 131
++F A++HE ++ GD + S+ D L++ML RKK+A
Sbjct: 503 SISF------AKDHEY--TDTGDEEESSERTPVSTKAYDEALFNMLKSLRKKIAHQKELP 554
Query: 132 PYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D +++++A P+T+ +A I+GV V G L I
Sbjct: 555 PYVIFQDPSLEEMATTYPTTEEEMAQINGVGMGKVKKFGQEFLDLI 600
>gi|373111502|ref|ZP_09525757.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 10230]
gi|423131855|ref|ZP_17119530.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 12901]
gi|423135590|ref|ZP_17123236.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 101113]
gi|423330145|ref|ZP_17307945.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 3837]
gi|371640169|gb|EHO05774.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 10230]
gi|371640694|gb|EHO06290.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 101113]
gi|371640856|gb|EHO06450.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 12901]
gi|404602617|gb|EKB02313.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 3837]
Length = 731
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 119/262 (45%), Gaps = 35/262 (13%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D L G GKDH +W L Q++ L + I + Y + +++ G Q++ D+
Sbjct: 455 DTLDFFGCGKDHDEKYWIALIRQVLVADLLRKDI-EAYGVLKLTEAGLQFI-----DNPK 508
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
++T + E DAE +++ + S A+L D L +L + RKK+A+ G
Sbjct: 509 SFMMTEDHEYSDAE------NDLDVIASKASLV------IDEALIGILKDLRKKVAKKYG 556
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI-RHLSQKLNLSL 188
P+ + D +++++ L P T ++NI GV++ +G + I +++ +
Sbjct: 557 VPPFVVFQDPSLEEMGLKYPVTLEEMSNIIGVSEGKAKKYGKEFVDVISKYVEDNDIIRP 616
Query: 189 DGKVGEHTAFTR--KLHVVVNTRTKLTPAKYEAWKMWHEDGL--SIQKIANYPGRSAPI- 243
D V + T KL+++ N KL+ + + K DGL +++I Y G I
Sbjct: 617 DDLVVKSTGANSALKLYIIQNVDRKLSLSDIASAKGLDMDGLLKEMEQIV-YSGTKLNIS 675
Query: 244 ----------KEQTVVDYLLEA 255
+++ + DY +E+
Sbjct: 676 YWIDDVLDEDQQEEIYDYFMES 697
>gi|95930254|ref|ZP_01312992.1| ATP-dependent DNA helicase RecQ [Desulfuromonas acetoxidans DSM
684]
gi|95133717|gb|EAT15378.1| ATP-dependent DNA helicase RecQ [Desulfuromonas acetoxidans DSM
684]
Length = 598
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 32/182 (17%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQ------Q 55
++V+D DKL +G+G D SS+ W L QL+ GYL + + + Y + +++
Sbjct: 435 QRVLDLGHDKLSTYGIGADQSSDVWGGLIRQLVHLGYLYQDVAN-YSVIKLTELSRTVLT 493
Query: 56 GKQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYH 115
G+Q L ARP + A + + DL + + L+
Sbjct: 494 GQQELTLARP-------------RLKAVTKKPVRKRAMDL------------DYNEDLFE 528
Query: 116 MLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQ 175
+L + RK++A G P+ + D ++ ++A P T+ + I+GV +H + +G +
Sbjct: 529 VLRQRRKEIADEQGVPPFVVFSDNSLVEMAYYLPLTEEEMMKINGVGKHKMAHYGQQFMD 588
Query: 176 TI 177
I
Sbjct: 589 AI 590
>gi|298675436|ref|YP_003727186.1| ATP-dependent DNA helicase RecQ [Methanohalobium evestigatum
Z-7303]
gi|298288424|gb|ADI74390.1| ATP-dependent DNA helicase RecQ [Methanohalobium evestigatum
Z-7303]
Length = 596
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 24/177 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+ D Q D L +G G ++ N W + +L+ GYL +K Y + ++Q+ + L
Sbjct: 433 TKKITDKQHDLLESYGAGYNYKKNQWLDIGKELLHKGYLE--VKGKYPVLKLNQKSQNIL 490
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
N ++ E+ + S ++ +E D QL+ L
Sbjct: 491 SGQE-----------NVQLTKLSEYPSTSK-----------QDNSANETDNQLFEKLRRL 528
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
RKKLA APY + D +++++A P T I GV ++ + +GD L I
Sbjct: 529 RKKLADSENKAPYIIFADTSLRQMASICPKTYDEFLKISGVGEYKLEKYGDMFLSEI 585
>gi|17227701|ref|NP_484249.1| ATP-dependent DNA helicase [Nostoc sp. PCC 7120]
gi|17135183|dbj|BAB77729.1| ATP-dependent DNA helicase [Nostoc sp. PCC 7120]
Length = 718
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 23/183 (12%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
K++ + DKL +G+GKD + + W+TL L+ G L +T D Y + ++
Sbjct: 444 KIIQYEHDKLSTYGIGKDRTVDEWRTLGRSLLHQGLLEQT-SDGYSVLKLN--------- 493
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
+ E++ + +S V K S E+ F EA+ L H L RK
Sbjct: 494 -----------ALSWEVMKRQRQVFLSVPVAQ-KLSLIQESPKFEEAEA-LLHRLRSLRK 540
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQ 182
+LA PY + D T+K + +P + + GV H + +G+ + IR Q
Sbjct: 541 QLADEQSVPPYVVFHDSTLKLMVQVQPQNLLEFSKLSGVGSHKLAQYGEKFIAEIRAYRQ 600
Query: 183 KLN 185
+ N
Sbjct: 601 EKN 603
>gi|392426734|ref|YP_006467728.1| ATP-dependent DNA helicase, RecQ-like protein [Desulfosporosinus
acidiphilus SJ4]
gi|391356697|gb|AFM42396.1| ATP-dependent DNA helicase, RecQ-like protein [Desulfosporosinus
acidiphilus SJ4]
Length = 731
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 135/324 (41%), Gaps = 53/324 (16%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
K+++ FDKL HGL KD K L L++ YL + + Y + +
Sbjct: 442 KIIELNFDKLSTHGLLKDMPLQEIKDLINFLVAESYLQLSTGE-YPVLKL---------- 490
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
P + GE + V S +E ++ L+ L RK
Sbjct: 491 -----MPSAVSVIKGET-------NVMKKVSPQPSKDAVE-------EVSLFDQLRALRK 531
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL-- 180
+LA PY + D T+++++ P+ + I GV + + +GD L+ I
Sbjct: 532 ELAAEENLPPYMIFADSTLREMSQVCPANHREMIRISGVGERKLEKYGDKFLKAIADFMD 591
Query: 181 SQKL----NLSL------DGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSI 230
S KL +LSL D + + T V + P+ + ++ E G S+
Sbjct: 592 SAKLKRVKSLSLASESNNDMQARKSNKETGVNLAVKDMEDDKLPSHIQTLVLYQE-GYSL 650
Query: 231 QKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGC 290
++I G+ I E TV ++L+ EG + W D+ +D+ I EA+ K G
Sbjct: 651 EEI----GKIRKITEITVQNHLVRCGLEGHAVPW----DDFIPSDQE-RLILEAVQKAG- 700
Query: 291 KDKLKPIKNELPDDITYAHIKACL 314
++KL+PIK L DDI + I+A L
Sbjct: 701 REKLRPIKELLSDDIEWFTIRAVL 724
>gi|426359284|ref|XP_004046910.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase [Gorilla gorilla gorilla]
Length = 1429
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 140/341 (41%), Gaps = 67/341 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIK--DVYRTVSVSQQGKQ 58
S+++ D Q+ + L G GKD + +WWK + QLI+ G+L E + + +++++G+
Sbjct: 988 SQRLAD-QYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICTLTKKGRN 1046
Query: 59 YLGSARPDHQPPLLLTFNGEM--------------VDAEEH------------------- 85
+L A + Q L+L N E+ + +EH
Sbjct: 1047 WLHKANTESQ-SLILQANEELCPKKFLLPSSKTVSLGTKEHCYNQVPVELTTEKKSNLEK 1105
Query: 86 -------ETISSNVGDLKSSATLEN--EGFS-----------EADMQLYHMLLEERKKLA 125
+ ISS K S +++ +S E + LY L+E R+K A
Sbjct: 1106 LYSYKPCDKISSGSNISKKSIMVQSPENAYSSSEPVISAQEQETQIVLYGKLVEARQKHA 1165
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
P L ++ + +A RP+T + IDGV++ LL+ I+H Q +
Sbjct: 1166 NKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAP-LLEVIKHFCQTNS 1224
Query: 186 LSLDGKVGEHTAFTRKLHVVV-NTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIK 244
+ D +K +V N L+ + + ++ E + ++ IA R P+
Sbjct: 1225 VQTDLFSSTKPQEEQKTSLVAKNKICTLSQSMAITYSLFQEKKMPLKSIAE--SRILPL- 1281
Query: 245 EQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
T+ +L +AV G ++ R GLT E+ I + I
Sbjct: 1282 -MTIGMHLSQAVKAGCPLDLER----AGLTPEVQKIIADVI 1317
>gi|86140388|ref|ZP_01058947.1| putative ATP-dependent DNA helicase [Leeuwenhoekiella blandensis
MED217]
gi|85832330|gb|EAQ50779.1| putative ATP-dependent DNA helicase [Leeuwenhoekiella blandensis
MED217]
Length = 733
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 20/200 (10%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
G GKD S++WK L Q++ GYL + I + Y + ++ +GK ++ P +
Sbjct: 462 GCGKDKESSYWKALLRQVLVAGYLRKDI-ETYGVIKLTPKGKDFI------KNPESFMMT 514
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
D E ++++ G T D +L ML + RKK+ + G PY +
Sbjct: 515 EDHAYD-ESADSVAVASGAKAGGGT---------DPKLVAMLKDLRKKVGKRKGVPPYIV 564
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI-RHLSQKLNLSLDGKVGE 194
D +++ +A+ P++ A +AN+ GV + +G ++ I ++ + L D V +
Sbjct: 565 FQDPSLEDMAIKYPTSIAEMANVFGVGEGKAKKYGREFVELIAAYVEEHDILKPDDLVVK 624
Query: 195 HTAFTR--KLHVVVNTRTKL 212
T KL+++ N KL
Sbjct: 625 STGSNSGLKLYIIQNVDRKL 644
>gi|87308100|ref|ZP_01090242.1| ATP-dependent DNA helicase RecQ [Blastopirellula marina DSM 3645]
gi|87289182|gb|EAQ81074.1| ATP-dependent DNA helicase RecQ [Blastopirellula marina DSM 3645]
Length = 736
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 136/323 (42%), Gaps = 47/323 (14%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
K+V++ DKL +GL ++ S + QL YL +T + Y + V++ G++ L
Sbjct: 445 KRVLEFDHDKLSTYGLLQNESIRSVRMWIEQLAGQRYLAKTGE--YNVLKVTEAGRELL- 501
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSAT---LENEGFSEADMQLYHMLL 118
GE+ I+ G KSS + + + D +L+ L
Sbjct: 502 --------------RGEVTPKLTKPDIADKAGPEKSSGSKRPRRADDWEGVDRELFESLR 547
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
R++ A G Y + GD +++++A RP+T + GV +G+ Q I
Sbjct: 548 TLRREKAEEAGIPAYIVFGDSSLREMARHRPATLESFRLMKGVGDKKCQDYGEVFTQHIV 607
Query: 179 HLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWK---MWHEDGLSIQKIAN 235
+ Q+ L ++ ++ V+ R + + +A K G ++ ++AN
Sbjct: 608 NYCQQNGLEVEAM---------EVQVIAAPRREPPKNQSQALKDAFTLFAKGQTVNEVAN 658
Query: 236 YPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVG-LTDEIFSAIQEAISKVGCKDKL 294
GR+ E TV YL + + E +L D +T E I+ AI + G L
Sbjct: 659 VIGRA----ESTVQGYLEQFIRE------EKLEDPTAWVTGETARRIEAAIEECG-TGGL 707
Query: 295 KPIKNELPDDITYAHIK---ACL 314
+PI L +++ Y+ I+ ACL
Sbjct: 708 RPIYEHLNEEVPYSEIRIVAACL 730
>gi|372209002|ref|ZP_09496804.1| ATP-dependent DNA helicase RecQ [Flavobacteriaceae bacterium S85]
Length = 734
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 22/204 (10%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
G+GK ++ +W L Q + GYL + I+ Y + V+ +G ++ A P ++
Sbjct: 459 FFGIGKHKNNEYWNALIRQTLVAGYLRKEIEQ-YGIIKVTPKGHDFI--ANP---TTFMM 512
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
T + VD ++ I +N + K++ T+ D QL +L RK + + G PY
Sbjct: 513 TEDHVYVDEDDKAVIIANAKN-KATVTM--------DTQLMSLLKSLRKTVGKKKGIPPY 563
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLS-----L 188
A+ D +++ + L P++ L NI GV G ++ I + N+ +
Sbjct: 564 AVFQDPSLEDMTLKYPTSLEELGNIHGVGDGKAKKFGKEFIELIAKYVAENNIDKPDDMV 623
Query: 189 DGKVGEHTAFTRKLHVVVNTRTKL 212
GE + KL+++ NT KL
Sbjct: 624 VKTTGEKSGL--KLYIIQNTDRKL 645
>gi|417840674|ref|ZP_12486783.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M19501]
gi|341950862|gb|EGT77444.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M19501]
Length = 615
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 83/179 (46%), Gaps = 20/179 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q DKL ++G+GKD S W+++ QLI G++ + I ++ T+ +++ K
Sbjct: 447 NQKIIERQHDKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVISELNPTLQLTESAK--- 503
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDL-KSSATLENEGFSEADMQLYHMLLE 119
+ GE EE E + + K + +G + D L+ L
Sbjct: 504 ------------VILKGE----EELELAMPRISSISKIVHNPQRQGVANYDKDLFARLRF 547
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A P+ + I+GV + G ++ I+
Sbjct: 548 LRKQIADKENIPPYIVFNDATLQEMAQYMPTNNIEMLQINGVGSIKLERFGQPFIKLIQ 606
>gi|229442299|gb|AAI72840.1| Werner syndrome protein [synthetic construct]
Length = 863
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 140/341 (41%), Gaps = 67/341 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIK--DVYRTVSVSQQGKQ 58
S+++ D Q+ + L G GKD + +WWK + QLI+ G+L E + + +++++G+
Sbjct: 422 SQRLAD-QYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRN 480
Query: 59 YLGSARPDHQPPLLLTFNGEMV--------------DAEEH------------------- 85
+L A + Q L+L N E+ +EH
Sbjct: 481 WLHKANTESQ-SLILQANEELCPKKLLLPSSKTVSSGTKEHCYNQVPVELSTEKKSNLEK 539
Query: 86 -------ETISSNVGDLKSSATLEN--EGFS-----------EADMQLYHMLLEERKKLA 125
+ ISS K S +++ + +S E + LY L+E R+K A
Sbjct: 540 LYSYKPCDKISSGSNISKKSIMVQSPEKAYSSSQPVISAQEQETQIVLYGKLVEARQKHA 599
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
P L ++ + +A RP+T + IDGV++ LL+ I+H Q +
Sbjct: 600 NKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAP-LLEVIKHFCQTNS 658
Query: 186 LSLDGKVGEHTAFTRKLHVVV-NTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIK 244
+ D +K +V N L+ + + ++ E + ++ IA R P+
Sbjct: 659 VQTDLFSSTKPQEEQKTSLVAKNKICTLSQSMAITYSLFQEKKMPLKSIAE--SRILPL- 715
Query: 245 EQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
T+ +L +AV G ++ R GLT E+ I + I
Sbjct: 716 -MTIGMHLSQAVKAGCPLDLER----AGLTPEVQKIIADVI 751
>gi|443309958|ref|ZP_21039633.1| ATP-dependent DNA helicase RecQ [Synechocystis sp. PCC 7509]
gi|442780011|gb|ELR90229.1| ATP-dependent DNA helicase RecQ [Synechocystis sp. PCC 7509]
Length = 724
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 130/320 (40%), Gaps = 57/320 (17%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVS-------VS 53
S+KV+ DKL +G+GKD +++ W+ L L+ G L +T D Y + V
Sbjct: 442 SQKVLQYNHDKLTTYGIGKDRTADDWRLLGRSLLHQGLLGQT-TDGYSVLRLNALSWEVM 500
Query: 54 QQGKQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQ- 112
++ K L + P +P V D K + AD++
Sbjct: 501 RRKKSVLLAISPAPKP----------------------VEDRKETP-------KAADIEM 531
Query: 113 LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDH 172
LY L RK+LA G APY + D ++K +A +P T A + + GV + +G+H
Sbjct: 532 LYQKLRALRKQLADEQGIAPYIVFADSSLKMMAQVQPQTLAEFSKVSGVGSSKLAQYGEH 591
Query: 173 LLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKM-WHEDGLSIQ 231
+ I +Q+ S+ +V A R + T P+ + + H GL
Sbjct: 592 FVAEITTYTQQ---SVKVEVPSAIAQARPV-----TGFASFPSDSQLLTLKLHRQGLDTA 643
Query: 232 KIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK 291
IA + T+ +L E + ++ +L V + F I +AI +G
Sbjct: 644 DIAT----ERSLSTSTIASHLAELIEMNQPVDLDQLVIPV---RQQF--IIKAIKTIGA- 693
Query: 292 DKLKPIKNELPDDITYAHIK 311
D LK I L + TY IK
Sbjct: 694 DSLKSIYEHLGESYTYDEIK 713
>gi|110735439|ref|NP_000544.2| Werner syndrome ATP-dependent helicase [Homo sapiens]
gi|322510082|sp|Q14191.2|WRN_HUMAN RecName: Full=Werner syndrome ATP-dependent helicase; AltName:
Full=DNA helicase, RecQ-like type 3; Short=RecQ3;
AltName: Full=Exonuclease WRN; AltName: Full=RecQ
protein-like 2
gi|37953299|gb|AAR05448.1| Werner syndrome [Homo sapiens]
Length = 1432
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 140/341 (41%), Gaps = 67/341 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIK--DVYRTVSVSQQGKQ 58
S+++ D Q+ + L G GKD + +WWK + QLI+ G+L E + + +++++G+
Sbjct: 991 SQRLAD-QYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRN 1049
Query: 59 YLGSARPDHQPPLLLTFNGEMV--------------DAEEH------------------- 85
+L A + Q L+L N E+ +EH
Sbjct: 1050 WLHKANTESQ-SLILQANEELCPKKLLLPSSKTVSSGTKEHCYNQVPVELSTEKKSNLEK 1108
Query: 86 -------ETISSNVGDLKSSATLEN--EGFS-----------EADMQLYHMLLEERKKLA 125
+ ISS K S +++ + +S E + LY L+E R+K A
Sbjct: 1109 LYSYKPCDKISSGSNISKKSIMVQSPEKAYSSSQPVISAQEQETQIVLYGKLVEARQKHA 1168
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
P L ++ + +A RP+T + IDGV++ LL+ I+H Q +
Sbjct: 1169 NKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAP-LLEVIKHFCQTNS 1227
Query: 186 LSLDGKVGEHTAFTRKLHVVV-NTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIK 244
+ D +K +V N L+ + + ++ E + ++ IA R P+
Sbjct: 1228 VQTDLFSSTKPQEEQKTSLVAKNKICTLSQSMAITYSLFQEKKMPLKSIAE--SRILPL- 1284
Query: 245 EQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
T+ +L +AV G ++ R GLT E+ I + I
Sbjct: 1285 -MTIGMHLSQAVKAGCPLDLER----AGLTPEVQKIIADVI 1320
>gi|1280208|gb|AAC41981.1| unnamed protein product [Homo sapiens]
gi|3719421|gb|AAC63361.1| WRN [Homo sapiens]
gi|6272686|gb|AAF06162.1| WRN [Homo sapiens]
gi|60461921|gb|AAX21098.1| Werner syndrome helicase [Homo sapiens]
Length = 1432
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 140/341 (41%), Gaps = 67/341 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIK--DVYRTVSVSQQGKQ 58
S+++ D Q+ + L G GKD + +WWK + QLI+ G+L E + + +++++G+
Sbjct: 991 SQRLAD-QYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRN 1049
Query: 59 YLGSARPDHQPPLLLTFNGEMV--------------DAEEH------------------- 85
+L A + Q L+L N E+ +EH
Sbjct: 1050 WLHKANTESQ-SLILQANEELCPKKFLLPSSKTVSSGTKEHCYNQVPVELSTEKKSNLEK 1108
Query: 86 -------ETISSNVGDLKSSATLEN--EGFS-----------EADMQLYHMLLEERKKLA 125
+ ISS K S +++ + +S E + LY L+E R+K A
Sbjct: 1109 LYSYKPCDKISSGSNISKKSIMVQSPEKAYSSSQPVISAQEQETQIVLYGKLVEARQKHA 1168
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
P L ++ + +A RP+T + IDGV++ LL+ I+H Q +
Sbjct: 1169 NKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAP-LLEVIKHFCQTNS 1227
Query: 186 LSLDGKVGEHTAFTRKLHVVV-NTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIK 244
+ D +K +V N L+ + + ++ E + ++ IA R P+
Sbjct: 1228 VQTDLFSSTKPQEEQKTSLVAKNKICTLSQSMAITYSLFQEKKMPLKSIAE--SRILPL- 1284
Query: 245 EQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
T+ +L +AV G ++ R GLT E+ I + I
Sbjct: 1285 -MTIGMHLSQAVKAGCPLDLER----AGLTPEVQKIIADVI 1320
>gi|168216581|ref|ZP_02642206.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens NCTC 8239]
gi|182381502|gb|EDT78981.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens NCTC 8239]
Length = 724
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 137/322 (42%), Gaps = 59/322 (18%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+++ D+L +G+ KD+S K LIS+ Y+ Y+
Sbjct: 437 NKKIIELGLDQLSTYGIMKDYSKEGLKDFINTLISHRYI------------------DYI 478
Query: 61 GS---ARPDHQPPLLLTFNGEMVDAEEHET--ISSNVGDLKSSATLENEGFSEADMQLYH 115
G R + +L N +++ E+ + +S N NE L+
Sbjct: 479 GEYPVVRLNKSSIDILKGNEKVMFKEKRKAHRVSKN-----------NE--------LFD 519
Query: 116 MLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQ 175
+L R+++A G PY + GD T+K++++ P +++L+ I GV + ++ +G+ L
Sbjct: 520 LLRSLRREIASEEGVPPYIVFGDNTLKEMSVRIPVNESQLSEISGVGEKKILKYGEMFLN 579
Query: 176 TIRHLSQKLNLSLDGKVG-EHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIA 234
I+ + N+ + + G + + +E +G IA
Sbjct: 580 VIKEYVKVNNIEVKWESGLKINKDELEEKFKKGNGKDGKKKSFEITIDMLREGDKFHTIA 639
Query: 235 NYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQE-----AISKVG 289
+ + TV+ ++ + + EG I++ E+ D +FS +E AI KVG
Sbjct: 640 ----KERELSITTVLSHIQQYLEEGNKIDF-----EIDF-DSLFSKREEELVLSAIDKVG 689
Query: 290 CKDKLKPIKNELPDDITYAHIK 311
KLKPIK L +D++Y I+
Sbjct: 690 Y-SKLKPIKENLEEDVSYEKIR 710
>gi|408374557|ref|ZP_11172242.1| ATP-dependent DNA helicase RecQ [Alcanivorax hongdengensis A-11-3]
gi|407765515|gb|EKF73967.1| ATP-dependent DNA helicase RecQ [Alcanivorax hongdengensis A-11-3]
Length = 712
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 113/286 (39%), Gaps = 52/286 (18%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S KV A D + +G + ++ WK++ QL++ G LT + Y + +++ + YL
Sbjct: 438 SDKVASAGHDHVSTWNIGNEFNATQWKSIYRQLVAQGLLTVDMNG-YGALQLTEACRPYL 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+P H E+ A K++ + +EAD L+ L
Sbjct: 497 RGEKPLH-------LRRELAKAS------------KTTTRRSHSAVAEADRVLWEALRAC 537
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA G PY + D T+ + RP + LA + GV + +GD L
Sbjct: 538 RKRLAEEEGVPPYVVFHDATLMDMLAVRPRNRRELAAVSGVGDRKLERYGDDFLAV---- 593
Query: 181 SQKLNLSLDGKVG-EHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGR 239
LN + D G A ++ + ++PA +IAN G
Sbjct: 594 ---LNDNDDAADGVAEPAGPDSNEILALAQANMSPA----------------QIANQQG- 633
Query: 240 SAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
I EQTV L E V+ G L +GL++ IQ+A+
Sbjct: 634 ---INEQTVYRQLAELVASG----QLTLEQALGLSEVEIGIIQDAL 672
>gi|354604692|ref|ZP_09022681.1| ATP-dependent DNA helicase RecQ [Alistipes indistinctus YIT 12060]
gi|353347271|gb|EHB91547.1| ATP-dependent DNA helicase RecQ [Alistipes indistinctus YIT 12060]
Length = 730
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 19/148 (12%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP-PLLL 73
G+G D S +W + Q + G++ + I++ Y +S++Q G YL QP +LL
Sbjct: 457 FGVGGDQSDRYWGAVVRQALILGFIDKNIEN-YGLLSITQTGLAYL------EQPYSVLL 509
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
T + E D ++ E ++ G K AD +L+ ML + RKK+AR P+
Sbjct: 510 TADHEYEDGDDDEAVTPPSG--KGGV---------ADEELFAMLKDLRKKVARQMELPPF 558
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGV 161
+ D +++ +++ P T L NI GV
Sbjct: 559 VIFQDPSLEDMSIQYPVTMEELQNITGV 586
>gi|119583829|gb|EAW63425.1| Werner syndrome, isoform CRA_b [Homo sapiens]
Length = 1436
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 140/341 (41%), Gaps = 67/341 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIK--DVYRTVSVSQQGKQ 58
S+++ D Q+ + L G GKD + +WWK + QLI+ G+L E + + +++++G+
Sbjct: 995 SQRLAD-QYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRN 1053
Query: 59 YLGSARPDHQPPLLLTFNGEMV--------------DAEEH------------------- 85
+L A + Q L+L N E+ +EH
Sbjct: 1054 WLHKANTESQ-SLILQANEELCPKKLLLPSSKTVSSGTKEHCYNQVPVELSTEKKSNLEK 1112
Query: 86 -------ETISSNVGDLKSSATLEN--EGFS-----------EADMQLYHMLLEERKKLA 125
+ ISS K S +++ + +S E + LY L+E R+K A
Sbjct: 1113 LYSYKPCDKISSGSNISKKSIMVQSPEKAYSSSQPVISAQEQETQIVLYGKLVEARQKHA 1172
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
P L ++ + +A RP+T + IDGV++ LL+ I+H Q +
Sbjct: 1173 NKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAP-LLEVIKHFCQTNS 1231
Query: 186 LSLDGKVGEHTAFTRKLHVVV-NTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIK 244
+ D +K +V N L+ + + ++ E + ++ IA R P+
Sbjct: 1232 VQTDLFSSTKPQEEQKTSLVAKNKICTLSQSMAITYSLFQEKKMPLKSIAE--SRILPL- 1288
Query: 245 EQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
T+ +L +AV G ++ R GLT E+ I + I
Sbjct: 1289 -MTIGMHLSQAVKAGCPLDLER----AGLTPEVQKIIADVI 1324
>gi|407979054|ref|ZP_11159877.1| ATP-dependent helicase [Bacillus sp. HYC-10]
gi|407414380|gb|EKF36030.1| ATP-dependent helicase [Bacillus sp. HYC-10]
Length = 596
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 31/183 (16%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV+D FD+L + L K HS+ LI+ YL + + Y T+ V+ +GK+ L
Sbjct: 439 NKKVLDLGFDRLPTYALMKQHSAQHISDFIEFLITEEYLHMS-EGAYPTLKVTYKGKKVL 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
++ + K+ A EN+ L+ L
Sbjct: 498 VGQEAVYKKQAI-----------------------KAMAIQENDA-------LFEQLRVV 527
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R +LAR G P+ + DQT+K+++ P T+ L NI GV +GD L+ IR
Sbjct: 528 RMRLAREQGVPPFVVFSDQTLKEMSAVEPKTEEELLNIKGVGAQKREKYGDVFLEEIRLF 587
Query: 181 SQK 183
+K
Sbjct: 588 IEK 590
>gi|387770728|ref|ZP_10126905.1| ATP-dependent DNA helicase RecQ [Pasteurella bettyae CCUG 2042]
gi|386903739|gb|EIJ68543.1| ATP-dependent DNA helicase RecQ [Pasteurella bettyae CCUG 2042]
Length = 630
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ + Q D+L ++G+GKD S +W+++ QLI G + + + D + Q
Sbjct: 453 NQKIKENQHDQLSVYGIGKDKSKEYWQSVIRQLIHLGLVQQILNDFGMGSRL-----QLT 507
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
SARP GE+ +SS + + T + D L+ L
Sbjct: 508 ESARP--------VLRGEVPLQLAMPRLSS----VTMAQTPQKNAIIYYDKDLFARLRFL 555
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++AL +P+T+ + I+GV + +G + I+
Sbjct: 556 RKQIADKENIPPYIVFNDATLQEMALHKPTTRVEMLQINGVGATKLERYGQAFMAIIK 613
>gi|189502511|ref|YP_001958228.1| hypothetical protein Aasi_1165 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497952|gb|ACE06499.1| hypothetical protein Aasi_1165 [Candidatus Amoebophilus asiaticus
5a2]
Length = 724
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 85/171 (49%), Gaps = 20/171 (11%)
Query: 8 QFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDH 67
Q +L + G G + ++W+++ Q + + YLT+ I+ T+ ++++G+ +L
Sbjct: 448 QHQQLPIFGQGNKQNESFWRSVIRQALIHDYLTKDIQK-NETLQLTKKGQDFLKKK---- 502
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ V +E I SN K + T N+G+ E L+H+L + R+K+A+
Sbjct: 503 -------YEINFVKDNIYEPIESN----KKTMT-TNKGYDE---NLFHLLKKLREKVAKE 547
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
G Y + D +++++AL P+T LA I G++ + G +Q I+
Sbjct: 548 KGIPAYTVLQDSSLEELALVYPTTLEELAQIGGLSMSKAVKFGQPFIQAIK 598
>gi|291386094|ref|XP_002709593.1| PREDICTED: Werner syndrome protein [Oryctolagus cuniculus]
Length = 1416
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 91/381 (23%), Positives = 156/381 (40%), Gaps = 73/381 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTET--IKDVYRTVSVSQQGKQ 58
S++V D ++ G+GKD + +WWK + LI+ G+L E + +++++G+
Sbjct: 967 SQRVAD-KYRSHSFFGIGKDQTESWWKAFSRLLINEGFLVEVPGSSKFVKICTLTKKGRV 1025
Query: 59 YLGSAR---------------PDHQP------------------PLLLT----FNGE-MV 80
+L +AR P P P+ LT +N E M
Sbjct: 1026 WLDTARGESPQRLVLPASDLCPRTCPLPSSKTASSGSEHSASHMPIELTAEKKYNLEKMY 1085
Query: 81 DAEEHETISSNVGDLKSSATL---------ENEGFSEADMQ---------LYHMLLEERK 122
+ + ISS L+ L ++ FSE + LY L+E R+
Sbjct: 1086 SYKAVDKISSGSNILQKGRVLNFIMLQSPGKSYSFSEPVISAQEQETQTVLYGKLVEARQ 1145
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQ 182
K A P L ++ + +A RP+T + IDGV++ LL+ I+H Q
Sbjct: 1146 KHANKMDVPPAILATNKILIDMAKMRPTTVENVKRIDGVSEGKAAMLAP-LLEVIKHFCQ 1204
Query: 183 KLNLSLDGKVGEHTAFTRKLHVVV-NTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
++ D +K VV N + L+ + + ++ E +S++ IA R
Sbjct: 1205 VNSVETDLFPTAKPQEEQKESVVARNKKCSLSQSAAITYSLFQEKKMSVESIAE--NRIL 1262
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK---DKLKPIK 298
P+ V +L +AV G ++ R GLT E+ I + I K+K I+
Sbjct: 1263 PL--TAVGMHLSQAVRAGCPLDMER----AGLTLEVRKIIADVIRNPPVNSDMSKVKLIR 1316
Query: 299 NELPDDI-TYAHIKACLVMEN 318
+P++I TY A ++EN
Sbjct: 1317 TLVPENIDTYLIHMAIDILEN 1337
>gi|222053514|ref|YP_002535876.1| ATP-dependent DNA helicase RecQ [Geobacter daltonii FRC-32]
gi|221562803|gb|ACM18775.1| ATP-dependent DNA helicase RecQ [Geobacter daltonii FRC-32]
Length = 605
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 30/174 (17%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTE-----TIKDVYRTVSVSQQGKQYLGSAR 64
D+L +G+GKD S + W ++ QL+ GYL + ++ + V +G++ L AR
Sbjct: 446 DRLSTYGIGKDISVDMWGSIIRQLVHLGYLEQDLASYSVLKLTPAARVLLRGEERLVLAR 505
Query: 65 PDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKL 124
P H+T S+ N+G D L+ L RK+L
Sbjct: 506 P------------------RHKTASAQKAP-------RNKGEVPCDDALFQTLRALRKRL 540
Query: 125 ARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
A G P+ + D T+ ++A RP L ++ GV H + +G+ L +R
Sbjct: 541 ADEAGVPPFVVFSDATLTEMAAMRPVDAEGLLSVSGVGIHKLGRYGEEFLTVLR 594
>gi|306921707|dbj|BAJ17933.1| Werner syndrome, RecQ helicase-like [synthetic construct]
Length = 1432
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 140/341 (41%), Gaps = 67/341 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIK--DVYRTVSVSQQGKQ 58
S+++ D Q+ + L G GKD + +WWK + QLI+ G+L E + + +++++G+
Sbjct: 991 SQRLAD-QYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRN 1049
Query: 59 YLGSARPDHQPPLLLTFNGEMV--------------DAEEH------------------- 85
+L A + Q L+L N E+ +EH
Sbjct: 1050 WLHKANTESQ-SLILQANEELCPKKLLLPSSKTVSSGTKEHCYNQVPVELSTEKKSNLEK 1108
Query: 86 -------ETISSNVGDLKSSATLEN--EGFS-----------EADMQLYHMLLEERKKLA 125
+ ISS K S +++ + +S E + LY L+E R+K A
Sbjct: 1109 LYSYKPCDKISSGSNISKKSIMVQSPEKAYSSSQPVISAQEQETQIVLYGKLVEARQKHA 1168
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
P L ++ + +A RP+T + IDGV++ LL+ I+H Q +
Sbjct: 1169 NKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAP-LLEVIKHFCQTNS 1227
Query: 186 LSLDGKVGEHTAFTRKLHVVV-NTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIK 244
+ D +K +V N L+ + + ++ E + ++ IA R P+
Sbjct: 1228 VQTDLFSSTKPQEEQKTSLVAKNKICTLSQSMAITYSLFQEKKMPLKSIAE--SRILPL- 1284
Query: 245 EQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
T+ +L +AV G ++ R GLT E+ I + I
Sbjct: 1285 -MTIGMHLSQAVKAGCPLDLER----AGLTPEVQKIIADVI 1320
>gi|86143313|ref|ZP_01061715.1| ATP-dependent DNA helicase recQ [Leeuwenhoekiella blandensis
MED217]
gi|85830218|gb|EAQ48678.1| ATP-dependent DNA helicase recQ [Leeuwenhoekiella blandensis
MED217]
Length = 704
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 127/313 (40%), Gaps = 52/313 (16%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
++D Q D++ +G+GKD S W+ QLI+ GY E + + +++ K+ L
Sbjct: 439 ILDHQLDQVSTYGIGKDVSWKDWQHYVLQLINQGY-CEIAFHLRNNLHLTESSKEVL--- 494
Query: 64 RPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKK 123
FNG+ V +++ LK + + +L+ L R +
Sbjct: 495 -----------FNGKKV------RLTAPTEVLKQEPVEARKPKIKKGNELFEKLRALRAE 537
Query: 124 LARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQK 183
+A+ Y + D+T+K++ ARP+T+ I GV Q + +GD ++ I +
Sbjct: 538 IAKEEEIPAYLVFSDKTLKELERARPTTEMEFLEISGVGQRKLEVYGDAFIEAILDFQKS 597
Query: 184 LNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPI 243
K H + L +DGLSI++IA+ +
Sbjct: 598 KIKKKGSKSATHQVTFQML----------------------KDGLSIEEIAS----KRDL 631
Query: 244 KEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPD 303
KE TV +L + +G D++ ++ E S I+ A ++ + LKP +
Sbjct: 632 KETTVYSHLAKLAQDGADLDLYTY-----VSREEVSRIKAAQKELEHPEGLKPYFEHFEE 686
Query: 304 DITYAHIKACLVM 316
I Y I+ L +
Sbjct: 687 KIPYYKIRLALTL 699
>gi|163787884|ref|ZP_02182330.1| putative ATP-dependent DNA helicase [Flavobacteriales bacterium
ALC-1]
gi|159876204|gb|EDP70262.1| putative ATP-dependent DNA helicase [Flavobacteriales bacterium
ALC-1]
Length = 733
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 20/202 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
G+GK + +W L Q++ GYL + I + Y + +S GK Y+ +P L
Sbjct: 460 FFGIGKSKDARYWMALIRQVLVAGYLKKDI-ETYGVLRLSDNGKNYIS------KPESFL 512
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
+ D ++ I +N G + AD +L ML + RK+ A+ G P+
Sbjct: 513 MAEDHVFDEGSNDGIITNA----------KGGGAAADEKLMTMLKDLRKRNAKSLGVPPF 562
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLSQKLNLSLDGKV 192
+ D +++ +AL P + L+N+ GV + +G + I ++ + + D V
Sbjct: 563 VIFQDPSLEDMALKYPISIEELSNVHGVGESKAKKYGKDFVGLIADYVEENDIMRPDDMV 622
Query: 193 GEHTAFTR--KLHVVVNTRTKL 212
+ T KL+++ N KL
Sbjct: 623 VKSTGTNSAIKLYIIQNVDRKL 644
>gi|119583828|gb|EAW63424.1| Werner syndrome, isoform CRA_a [Homo sapiens]
Length = 1405
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 140/341 (41%), Gaps = 67/341 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIK--DVYRTVSVSQQGKQ 58
S+++ D Q+ + L G GKD + +WWK + QLI+ G+L E + + +++++G+
Sbjct: 964 SQRLAD-QYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRN 1022
Query: 59 YLGSARPDHQPPLLLTFNGEMV--------------DAEEH------------------- 85
+L A + Q L+L N E+ +EH
Sbjct: 1023 WLHKANTESQ-SLILQANEELCPKKLLLPSSKTVSSGTKEHCYNQVPVELSTEKKSNLEK 1081
Query: 86 -------ETISSNVGDLKSSATLEN--EGFS-----------EADMQLYHMLLEERKKLA 125
+ ISS K S +++ + +S E + LY L+E R+K A
Sbjct: 1082 LYSYKPCDKISSGSNISKKSIMVQSPEKAYSSSQPVISAQEQETQIVLYGKLVEARQKHA 1141
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
P L ++ + +A RP+T + IDGV++ LL+ I+H Q +
Sbjct: 1142 NKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAP-LLEVIKHFCQTNS 1200
Query: 186 LSLDGKVGEHTAFTRKLHVVV-NTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIK 244
+ D +K +V N L+ + + ++ E + ++ IA R P+
Sbjct: 1201 VQTDLFSSTKPQEEQKTSLVAKNKICTLSQSMAITYSLFQEKKMPLKSIAE--SRILPL- 1257
Query: 245 EQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
T+ +L +AV G ++ R GLT E+ I + I
Sbjct: 1258 -MTIGMHLSQAVKAGCPLDLER----AGLTPEVQKIIADVI 1293
>gi|119583830|gb|EAW63426.1| Werner syndrome, isoform CRA_c [Homo sapiens]
Length = 1406
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 140/341 (41%), Gaps = 67/341 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIK--DVYRTVSVSQQGKQ 58
S+++ D Q+ + L G GKD + +WWK + QLI+ G+L E + + +++++G+
Sbjct: 965 SQRLAD-QYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRN 1023
Query: 59 YLGSARPDHQPPLLLTFNGEMV--------------DAEEH------------------- 85
+L A + Q L+L N E+ +EH
Sbjct: 1024 WLHKANTESQ-SLILQANEELCPKKLLLPSSKTVSSGTKEHCYNQVPVELSTEKKSNLEK 1082
Query: 86 -------ETISSNVGDLKSSATLEN--EGFS-----------EADMQLYHMLLEERKKLA 125
+ ISS K S +++ + +S E + LY L+E R+K A
Sbjct: 1083 LYSYKPCDKISSGSNISKKSIMVQSPEKAYSSSQPVISAQEQETQIVLYGKLVEARQKHA 1142
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
P L ++ + +A RP+T + IDGV++ LL+ I+H Q +
Sbjct: 1143 NKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAP-LLEVIKHFCQTNS 1201
Query: 186 LSLDGKVGEHTAFTRKLHVVV-NTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIK 244
+ D +K +V N L+ + + ++ E + ++ IA R P+
Sbjct: 1202 VQTDLFSSTKPQEEQKTSLVAKNKICTLSQSMAITYSLFQEKKMPLKSIAE--SRILPL- 1258
Query: 245 EQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
T+ +L +AV G ++ R GLT E+ I + I
Sbjct: 1259 -MTIGMHLSQAVKAGCPLDLER----AGLTPEVQKIIADVI 1294
>gi|255037353|ref|YP_003087974.1| ATP-dependent DNA helicase RecQ [Dyadobacter fermentans DSM 18053]
gi|254950109|gb|ACT94809.1| ATP-dependent DNA helicase RecQ [Dyadobacter fermentans DSM 18053]
Length = 737
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 22/167 (13%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARP-----DHQPP 70
GL + S ++W + QL+ +GYL + I++ Y + +S++G +YL P DH
Sbjct: 460 GLELNESRDYWVSAIRQLVIFGYLEKDIEN-YGVIRLSEKGGRYLNDPYPVTLHKDH--- 515
Query: 71 LLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGT 130
F+ E + A++ + S N G+ + A + EA L ML RKK+A+
Sbjct: 516 ---NFDEEEIKADDDDKESGN-GNGSAHA------YDEA---LLGMLKALRKKVAKDKNL 562
Query: 131 APYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D +++++A P+T+ +A I+GV V G ++ I
Sbjct: 563 PPYVIFQDPSMEEMATTYPTTQQEMAQINGVGMGKVQKFGKPFIELI 609
>gi|323343308|ref|ZP_08083535.1| ATP-dependent helicase RecQ [Prevotella oralis ATCC 33269]
gi|323095127|gb|EFZ37701.1| ATP-dependent helicase RecQ [Prevotella oralis ATCC 33269]
Length = 725
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 24/178 (13%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDV--YRTVSVSQQGKQYLG 61
+V + D+L G G+D W + Q + GY+ IKDV Y + ++Q GK+YL
Sbjct: 445 IVSHKHDQLEEFGSGEDEDPKIWNPVIRQALIAGYI---IKDVENYGLLKITQAGKRYL- 500
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
H ++ + D +E +VG+ S D +LY ML + R
Sbjct: 501 ----KHPHSFMI-----VEDTVFNEEEEEDVGEATGSVL---------DPELYSMLKDLR 542
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
K++A+ G PY + D +++++A P T A L I GV +GD L I+
Sbjct: 543 KRVAKKQGLPPYVIFQDISLEQMATMYPVTPAELQQIQGVGAGKAKRYGDEFLALIKR 600
>gi|415885925|ref|ZP_11547748.1| ATP-dependent DNA helicase RecQ [Bacillus methanolicus MGA3]
gi|387588578|gb|EIJ80899.1| ATP-dependent DNA helicase RecQ [Bacillus methanolicus MGA3]
Length = 723
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 136/316 (43%), Gaps = 49/316 (15%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+ + F KL +G+ K+ S+ LIS + + T+ V+++GK L
Sbjct: 437 NKKITELHFHKLSTYGIMKEKSAKEVSDFIEFLISQEMIGVN-HGSFPTIFVTEKGKNVL 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
G+ V ++ ++ V + D L+ L
Sbjct: 496 L---------------GKQVVRKKEAVLTKQVAN---------------DDPLFDRLRII 525
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R+ +A + P+ + D T+K + + P + ++GV ++ + +G+ + I
Sbjct: 526 RRSIAEMEKVPPFVIFSDTTLKDMCIKLPQSDEEFLQVNGVGENKLKKYGEVFISAIISY 585
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
+ L K E + F +K T+ + ++M+ +GLS+++I+
Sbjct: 586 CDEHPERLLKKATERS-FKKK------TKKAERDSHLVTYEMFL-NGLSLKEISG----K 633
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
+ TV ++LL +G D+++ E + E ++ AI + G D+LKPIK +
Sbjct: 634 RELALATVENHLLLCAEQGLDVDF-----EALIPAEYMPLLKRAIEEAGS-DRLKPIKEQ 687
Query: 301 LPDDITYAHIKACLVM 316
LP+++T+ IKA L +
Sbjct: 688 LPEEVTFFMIKAFLFL 703
>gi|338810798|ref|ZP_08623037.1| ATP-dependent DNA helicase RecQ [Acetonema longum DSM 6540]
gi|337277234|gb|EGO65632.1| ATP-dependent DNA helicase RecQ [Acetonema longum DSM 6540]
Length = 713
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 123/314 (39%), Gaps = 50/314 (15%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV + F L +G+ K++S+ K L L + YL T
Sbjct: 439 NKKVTEMGFSSLSTYGILKEYSTQEIKDLINLLAAEDYLYFT------------------ 480
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P P + LT V + E K A D L+ +L
Sbjct: 481 ----PGQYPLVKLTPKAGDVLRNQAEVWQKVTKQPKQQAV---------DNSLFALLRNL 527
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R+++A PY + D T++++ P L I GV + + +G LQ I
Sbjct: 528 RREIASRENVPPYVVFADSTLREMCEQFPPDMESLRLIKGVGEVKLDRYGREFLQVILLY 587
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
+ N+ + H A K P+ ++ + G S+++I +
Sbjct: 588 MAQHNIQPISRSNAHLAAPDK--------PPELPSHIITLNLF-KAGKSLEEIC----QE 634
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
+K TV D+L+ E I+W RL + + + I + I K+G D+LKP+K+
Sbjct: 635 RDLKPVTVQDHLVRCSLEDHSIDWDRL-----IPAQYETVILDTIKKLG-PDRLKPLKDA 688
Query: 301 LPDDITYAHIKACL 314
LP +ITY IKA L
Sbjct: 689 LPSNITYETIKAVL 702
>gi|339048396|ref|ZP_08647334.1| ATP-dependent DNA helicase RecQ [gamma proteobacterium IMCC2047]
gi|330722397|gb|EGH00244.1| ATP-dependent DNA helicase RecQ [gamma proteobacterium IMCC2047]
Length = 323
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 84/177 (47%), Gaps = 13/177 (7%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ KV ++L G+G+D+S W+++ QL+ G++ ++ + + ++++ + L
Sbjct: 156 TPKVKQHHHEELSTFGIGRDYSEQKWRSVIRQLMVQGFIKSDVEQ-FGALHLTEKSRPLL 214
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S + F E D E + +S + + E+ S+AD L+ L
Sbjct: 215 RSE--------MTLFLRE--DLPEPQLQTSRRASQRKTGLAED--VSDADRALWEALRSC 262
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
RK+LA PY + D T+ ++ RP+T A L NI G+ Q + +GD L+ I
Sbjct: 263 RKELAEEHDVPPYVIFHDATLMEMMQYRPTTVAELLNITGIGQAKLDRYGDEFLEVI 319
>gi|410617871|ref|ZP_11328835.1| ATP-dependent DNA helicase RecQ [Glaciecola polaris LMG 21857]
gi|410162601|dbj|GAC32973.1| ATP-dependent DNA helicase RecQ [Glaciecola polaris LMG 21857]
Length = 729
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 132/314 (42%), Gaps = 40/314 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV+ Q + L + +G + + W TL+ Q+I G L + + + + ++QQ + L
Sbjct: 438 AEKVLQNQHNMLSTYNIGNEFTKKQWMTLSRQMIQKGLLRQ--DEQFGGLKLTQQAGEIL 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSE-ADMQLYHMLLE 119
P + VG SS + FS+ D L +L
Sbjct: 496 KGNAP------------------FFALLQQPVGQSHSSG----KTFSKPGDAGLMQILKA 533
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
+RK+LA PYA+ D+T+ ++A P L I GV Q + +G+ L I
Sbjct: 534 QRKQLADAANLPPYAVFADRTLNEMAYFLPQNAQNLLRIHGVGQGKLDKYGERFLALIAD 593
Query: 180 LSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWH--EDGLSIQKIANYP 237
Q+ +L E A + V T++ + ++ + H E G SI ++A
Sbjct: 594 YCQQHDLQ--EVTNEQPATS-----VSPTKSSQSSMGAKSLAIVHAFEAGQSIGQLA--- 643
Query: 238 GRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEV-GLTDEIFSAIQEAISKVGCKDKLKP 296
+K T++++L V +G + EV L+ + A ++ G +++LKP
Sbjct: 644 -EQGKVKPATIINHLYRYVQQGNTLTIPEQVLEVRQLSQASIEQVMAAFNEHG-EERLKP 701
Query: 297 IKNELPDDITYAHI 310
I + L +TY +
Sbjct: 702 IYDSLNGILTYEQL 715
>gi|373467701|ref|ZP_09558994.1| ATP-dependent DNA helicase RecQ [Haemophilus sp. oral taxon 851
str. F0397]
gi|371758043|gb|EHO46820.1| ATP-dependent DNA helicase RecQ [Haemophilus sp. oral taxon 851
str. F0397]
Length = 619
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q DKL ++G+GKD S W+++ QLI G++ + I ++ T+ +++ K L
Sbjct: 447 NQKIIERQHDKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVISELNPTLQLTESAKAIL 506
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ PL L +IS V + + +G + D L+ L
Sbjct: 507 KG-----EEPLELAM-------PRISSISKIVHN------PQRQGVANYDKDLFARLRFL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P++ + I+GV
Sbjct: 549 RKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGV 589
>gi|332240842|ref|XP_003269596.1| PREDICTED: Werner syndrome ATP-dependent helicase [Nomascus
leucogenys]
Length = 1433
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 137/341 (40%), Gaps = 67/341 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIK--DVYRTVSVSQQGKQ 58
S+++ D Q+ + L G GKD + +WWK + QLI G+L E + + +++++G+
Sbjct: 992 SQRLAD-QYRRHSLFGTGKDQTESWWKAFSRQLIIEGFLEEVSRYNKFVKICTLTKKGRN 1050
Query: 59 YLGSARPDHQPPLLLTFNGEMV--------------DAEEH------------------- 85
+L A + Q L+L N E+ +EH
Sbjct: 1051 WLHKANTESQS-LILQANEELCPKKFLLPSLKTVSSGTKEHCYNQVPVELTTEKKSNLEK 1109
Query: 86 -------ETISSNVGDLKSSATLENEGFS-------------EADMQLYHMLLEERKKLA 125
E ISS K S +++ S E + LY L+E R+K A
Sbjct: 1110 LYSYKPCEKISSGSNISKKSIMVQSPEKSYSSSEPVISAQEQETQIVLYGKLVEARQKHA 1169
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
P L ++ + +A RP+T + IDGV++ LL+ I+H Q +
Sbjct: 1170 NKMDVPPAILATNKILLDMAKMRPTTVENVKRIDGVSEGKAAVLAP-LLEVIKHFCQTNS 1228
Query: 186 LSLDGKVGEHTAFTRKLHVVV-NTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIK 244
+ D +K +V N L+ + + ++ E + ++ IA R P+
Sbjct: 1229 VQTDLFSSTKPQEEQKTSLVAKNKICTLSQSMAITYSLFQEKKMPLKSIAE--SRILPL- 1285
Query: 245 EQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
T+ +L +AV G ++ R GLT E+ I + I
Sbjct: 1286 -MTIGMHLSQAVKAGCPLDLER----AGLTPEVQKIIADVI 1321
>gi|27375353|ref|NP_766882.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110]
gi|27348489|dbj|BAC45507.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110]
Length = 670
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 10/178 (5%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV DKL + G+G++ + W+T+ QL++ G+L ++ + Y + +++ +
Sbjct: 501 TEKVTQFGHDKLSVFGIGRELNEKQWRTVLRQLVAMGHL-QSDSEAYGALKLTEAAR--- 556
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
G R + + L G V + + S GDL +A+ + D +L L
Sbjct: 557 GVLRGETEVWLREEVPGTRVRSSRAK---SRRGDLAPAASAPQ---GDVDPELRARLRSW 610
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
R +AR G Y + D TI I A P+T L N+ G+ + +GD LLQ +R
Sbjct: 611 RSDVARERGVPAYVVLHDATIDGIVRAWPTTLDELRNVPGIGDKKLEHYGDELLQIVR 668
>gi|392381147|ref|YP_005030344.1| ATP-dependent DNA helicase [Azospirillum brasilense Sp245]
gi|356876112|emb|CCC96865.1| ATP-dependent DNA helicase [Azospirillum brasilense Sp245]
Length = 642
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 26/195 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQG---- 56
++KV D L G GK+ S W+++ QL++ GYLT ++ Y ++ G
Sbjct: 456 TEKVAQQAHDALKTFGCGKELSKAEWQSVYRQLVAAGYLTVDLEG-YGGFRLTDAGIPVI 514
Query: 57 -KQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNV--GDLKSSATLENEG-------- 105
Q R D P++ G H+ + +V G S L EG
Sbjct: 515 KGQQTVKLRKD---PVVEKRRGV------HDALRRHVSRGGSAPSGGLSGEGVSRAGARG 565
Query: 106 -FSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQH 164
S AD L+H L + R +LAR G PY + D T+ ++ RP +A A + GV
Sbjct: 566 ALSPADDALWHALKDCRTELARAQGVPPYVIFHDSTLLEMVATRPMDRAAFARLPGVGAR 625
Query: 165 LVITHGDHLLQTIRH 179
+ + D L IR
Sbjct: 626 KLERYADPFLDVIRQ 640
>gi|428210292|ref|YP_007094645.1| ATP-dependent DNA helicase RecQ [Chroococcidiopsis thermalis PCC
7203]
gi|428012213|gb|AFY90776.1| ATP-dependent DNA helicase RecQ [Chroococcidiopsis thermalis PCC
7203]
Length = 708
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 133/312 (42%), Gaps = 57/312 (18%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV+ +KL +G+GKD + W+ L L+ G L +T D Y + ++
Sbjct: 442 NQKVLQYNHNKLSTYGIGKDKTVEEWRLLGRSLLHQGLLDQTT-DGYSVLKLN------- 493
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ E++ + +I+ + S+ LE +E +M L+ L
Sbjct: 494 -------------AASWEVMRRQRTVSIAIDTTPNLSAQPLEART-AEVEM-LFQKLRSL 538
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK++A PY + D T+K +AL +P T A + GV H + +G L I+
Sbjct: 539 RKEIADEQSVPPYVIFADSTLKLMALQQPQTLTEFAQLSGVTSHKIAQYGKKFLIEIQ-- 596
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKM-WHEDGLSIQKIANYPGR 239
A+T+ N P E + + ++ GLS+ +IA +
Sbjct: 597 ----------------AYTQTQTQTSN-----IPTDTEQFTLHLYQQGLSVAEIA----Q 631
Query: 240 SAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKN 299
++ T++ +L + V + D++ RL V +I I +A+ K+G L PI+
Sbjct: 632 KRDLRPTTIIRHLSDLVEKNQDVDLDRL---VNRDRQI--KICQALEKLG-DISLTPIRE 685
Query: 300 ELPDDITYAHIK 311
L +D +Y I+
Sbjct: 686 YLGEDYSYDEIR 697
>gi|313677434|ref|YP_004055430.1| ATP-dependent DNA helicase recQ [Marivirga tractuosa DSM 4126]
gi|312944132|gb|ADR23322.1| ATP-dependent DNA helicase RecQ [Marivirga tractuosa DSM 4126]
Length = 725
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
+KL +HG+G D +WK++ Q + YGYL + I+++ + +++ G+ +L +
Sbjct: 448 NKLDVHGVGADQDVEFWKSVIRQTMLYGYLEKDIENI-GVLKINKAGEDFLKNP-----T 501
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
+ T N D + + I + K+ D LY L RKK+A+
Sbjct: 502 DIQFTVNHVYTDDGDEDQIEKDAVSAKA-----------FDETLYTQLKALRKKVAKSKN 550
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
PY + D +++++A P+T +A ++GV V G ++ I+
Sbjct: 551 LPPYVIFQDPSLEEMATTYPTTNEEMAAVNGVGLGKVRKFGKPFMELIK 599
>gi|307609659|emb|CBW99166.1| hypothetical protein LPW_09501 [Legionella pneumophila 130b]
Length = 608
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 25/185 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S+K+ + + L G+GK+ S+N+WK LA+QLI Y + +
Sbjct: 444 SEKIKQSGHEHLSTFGIGKEKSANYWKHLAWQLIHKDYCLQDM----------------- 486
Query: 61 GSARPDHQPPLLLTFNG-EMVDAEEHETISSNVGDLKSSAT--LENEGFSEADMQLYHML 117
+H L LT ++ EE +++ DL SS ++ F L+ L
Sbjct: 487 -----NHFNVLRLTPKAIPLLKGEESISLTIPNNDLNSSKKKGKQSPSFKPESNPLFEKL 541
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R++LA P+ + D T+ ++A +P +L N+ GV QH + +G + L+ +
Sbjct: 542 RALRRQLADEENKPPFMIFSDATLHEMAQLKPKNSKQLLNVSGVGQHKLARYGHYFLEAL 601
Query: 178 RHLSQ 182
S+
Sbjct: 602 NEFSE 606
>gi|296106447|ref|YP_003618147.1| Superfamily II DNA helicase [Legionella pneumophila 2300/99 Alcoy]
gi|295648348|gb|ADG24195.1| Superfamily II DNA helicase [Legionella pneumophila 2300/99 Alcoy]
Length = 608
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 25/185 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S+K+ + + L G+GK+ S+N+WK LA+QLI Y + +
Sbjct: 444 SEKIKQSGHEHLSTFGIGKEKSANYWKHLAWQLIHKDYCLQDM----------------- 486
Query: 61 GSARPDHQPPLLLTFNG-EMVDAEEHETISSNVGDLKSSAT--LENEGFSEADMQLYHML 117
+H L LT ++ EE +++ DL SS ++ F L+ L
Sbjct: 487 -----NHFNVLRLTPKAIPLLKGEESISLTIPNNDLNSSKKKGKQSPSFKPESNPLFEKL 541
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R++LA P+ + D T+ ++A +P +L N+ GV QH + +G + L+ +
Sbjct: 542 RALRRQLADEENKPPFMIFSDATLHEMAQLKPKNSKQLLNVSGVGQHKLARYGHYFLEAL 601
Query: 178 RHLSQ 182
S+
Sbjct: 602 NEFSE 606
>gi|197120051|ref|YP_002140478.1| ATP-dependent DNA helicase RecQ [Geobacter bemidjiensis Bem]
gi|197089411|gb|ACH40682.1| ATP-dependent DNA helicase RecQ [Geobacter bemidjiensis Bem]
Length = 599
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 23/184 (12%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
++ + + D+L G+GK HS +W L QLI GYL + + + + + +++
Sbjct: 438 RIQELKHDQLSTFGIGKQHSQEFWGNLLRQLIHLGYLEQDLAN-FSVLKLTE-------G 489
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
ARP + A +T V + KS+A + D L+ L E RK
Sbjct: 490 ARPLL------RGELRLELARPRDT---KVVEKKSAARKPS-----YDGALFQELRELRK 535
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
+A P+ + D T+ ++A P K L I GV QH + +GD L+ IR HL
Sbjct: 536 GIADEQQVPPFVVFADATLAEMAAQLPKDKWELLKITGVGQHKMARYGDAFLRVIREHLE 595
Query: 182 QKLN 185
++ N
Sbjct: 596 KEAN 599
>gi|397521446|ref|XP_003830806.1| PREDICTED: Werner syndrome ATP-dependent helicase [Pan paniscus]
Length = 1405
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 139/341 (40%), Gaps = 67/341 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIK--DVYRTVSVSQQGKQ 58
S+++ D Q+ + L G GKD + +WWK + QLI+ G+L E + + ++++G+
Sbjct: 964 SQRLAD-QYRRHSLFGTGKDQTESWWKAFSRQLITEGFLEEVSRYNKFMKICILTKEGRN 1022
Query: 59 YLGSARPDHQPPLLLTFNGEMV--------------DAEEH------------------- 85
+L A + Q L+L N E+ +EH
Sbjct: 1023 WLHKANTESQS-LILQANEELCPKKFLLPSSKTVSSGTKEHCYNQVPVELTTEKKSNLEK 1081
Query: 86 -------ETISSNVGDLKSSATLEN--EGFS-----------EADMQLYHMLLEERKKLA 125
+ ISS K S +++ + +S E + LY L+E R+K A
Sbjct: 1082 LYSYKPCDKISSGSNISKKSIMVQSPEKAYSSSEPVISAQEQETQIVLYGKLVEARQKHA 1141
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
P L ++ + +A RP+T + IDGV++ LL+ I+H Q +
Sbjct: 1142 NKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAP-LLEVIKHFCQTNS 1200
Query: 186 LSLDGKVGEHTAFTRKLHVVV-NTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIK 244
L D +K +V N L+ + + ++ E + ++ IA R P+
Sbjct: 1201 LQTDLFSSTKPQEEQKTSLVAKNKICTLSQSMAITYSLFQEKKMPLKSIAE--SRILPL- 1257
Query: 245 EQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
T+ +L +AV G ++ R GLT E+ I + I
Sbjct: 1258 -MTIGMHLSQAVKAGCPLDLER----AGLTPEVQKIIADVI 1293
>gi|237809713|ref|YP_002894153.1| ATP-dependent DNA helicase RecQ [Tolumonas auensis DSM 9187]
gi|237501974|gb|ACQ94567.1| ATP-dependent DNA helicase RecQ [Tolumonas auensis DSM 9187]
Length = 604
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 24/181 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S+++ + DKL +G+GK+ S +W ++ QLI G L ++++ R + + Q
Sbjct: 440 SQRIRELGHDKLSTYGIGKEQSHEYWVSVLRQLIHKGLL---VQNITRHLVL-----QLT 491
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEA---DMQLYHML 117
+ARP ++ E+ ++ +L S+ L A D L+ L
Sbjct: 492 EAARP-------------ILRGEQALELAVPRTELLSAKKLRRRELELAQGEDAALFREL 538
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ RK+LA G PY + D T+ ++A RP+T++ + I+GV + G+ L+ I
Sbjct: 539 RKLRKQLAEEEGIPPYVVFNDATLLELAQFRPTTESEMLTINGVGYRKLERFGEVFLECI 598
Query: 178 R 178
R
Sbjct: 599 R 599
>gi|404497566|ref|YP_006721672.1| ATP-dependent DNA helicase RecQ [Geobacter metallireducens GS-15]
gi|418065091|ref|ZP_12702466.1| ATP-dependent DNA helicase RecQ [Geobacter metallireducens RCH3]
gi|78195168|gb|ABB32935.1| ATP-dependent DNA helicase RecQ [Geobacter metallireducens GS-15]
gi|373562723|gb|EHP88930.1| ATP-dependent DNA helicase RecQ [Geobacter metallireducens RCH3]
Length = 601
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D+L +G+G D S+ W ++ QLI GYL + + + Y + ++ +ARP +
Sbjct: 446 DRLSTYGIGADRSAEAWGSIIRQLIHRGYLEQDLAN-YSVLKLTP-------AARPLLRG 497
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
+ LT V + G + S +E D L+ L RK+LA
Sbjct: 498 EVSLTLAKPRVKVAPVKKEPKRKGVVAS--------LAERDEDLFQALRALRKRLADEQQ 549
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
PY + D T+ ++A RP+T L ++GV + + +G L+ IR+ S
Sbjct: 550 VPPYVIFSDATLVEMATLRPATMDDLLRVNGVGEQKLGRYGAAFLEAIRNNS 601
>gi|67924781|ref|ZP_00518182.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Crocosphaera watsonii WH 8501]
gi|416405865|ref|ZP_11687987.1| ATP-dependent DNA helicase RecQ [Crocosphaera watsonii WH 0003]
gi|67853376|gb|EAM48734.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Crocosphaera watsonii WH 8501]
gi|357261215|gb|EHJ10512.1| ATP-dependent DNA helicase RecQ [Crocosphaera watsonii WH 0003]
Length = 710
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 119/298 (39%), Gaps = 56/298 (18%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
+G+GK+ S+ WK L LI G++ ET D + + +++ + + R
Sbjct: 457 YGIGKERSTEEWKMLGRSLIHQGFVNET-SDGFSVLKLNKYSWEIFRNERK--------- 506
Query: 75 FNGEMVDAEEHETISSN-VGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
V+ E++SS + D N +E+D+ L L + RK LA APY
Sbjct: 507 -----VEIAVTESLSSKELNDY-------NPRKAESDL-LLDKLRQLRKHLADQNRIAPY 553
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVG 193
+ D +++ +A +P T NI GV + +GD + IR Q+ +L
Sbjct: 554 VIFADSSLRLMAQIKPQTIEAFKNISGVTAYKAQQYGDSFVSVIREFCQQQSLP------ 607
Query: 194 EHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLL 253
T L A ++ GLS+ +IA +K+ T+ ++
Sbjct: 608 ----------------TPLPTNTNMATLQLYQQGLSVPEIAE----RRNLKQTTIYGHIA 647
Query: 254 EAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIK 311
+ + I+ E + I + I +G L P+KN L DD +Y IK
Sbjct: 648 DLIEMNQPIDVDSFVSE-----HKKALIIKCIQTIG-DGALNPLKNHLGDDYSYGEIK 699
>gi|421596628|ref|ZP_16040406.1| ATP-dependent DNA helicase RecQ, partial [Bradyrhizobium sp.
CCGE-LA001]
gi|404271259|gb|EJZ35161.1| ATP-dependent DNA helicase RecQ, partial [Bradyrhizobium sp.
CCGE-LA001]
Length = 273
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV DKL + G+G++ + W+T+ QL++ G+L ++ + Y + ++ +
Sbjct: 103 TEKVTQFGHDKLSVFGIGRELNEKQWRTVLRQLVAMGHL-QSDSEAYGALKLTDSSR--- 158
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
G R + + L G V + + S GDL +A+ +G + D +L L
Sbjct: 159 GVLRGETEVWLREEAPGTRVRSSRAK---SRRGDLAPAASATPQG--DVDPELRARLRSW 213
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
R +AR G Y + D TI I A P+T L N+ G+ + +G+ LLQ +R
Sbjct: 214 RSDIARERGVPAYVVLHDATIDGIVRAWPTTLDELRNVPGIGDKKLEHYGEELLQIVR 271
>gi|408788388|ref|ZP_11200109.1| ATP-dependent DNA helicase RecQ [Rhizobium lupini HPC(L)]
gi|408485977|gb|EKJ94310.1| ATP-dependent DNA helicase RecQ [Rhizobium lupini HPC(L)]
Length = 620
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D++ +G+GK+H + W+ + QL++ L + + +S+S G+Q+L +P
Sbjct: 463 DRVTTYGIGKEHDNRTWRAILRQLVAL-RLIDVDLSGHGGLSISADGRQFL-----REKP 516
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
L+L A + ++ +SA L +AD L+ +L +R ++AR
Sbjct: 517 SLMLRIPSAPRAARQQAPRNA------ASAAL-----PDADRGLFEVLRAKRMEIARAQN 565
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D+T+ ++A A+P + +A I GV + +G L+ I
Sbjct: 566 VPPYVIFHDKTLIELAAAKPVSVKDMAQIPGVGDTKLERYGPAFLEAI 613
>gi|261823379|ref|YP_003261485.1| ATP-dependent DNA helicase RecQ [Pectobacterium wasabiae WPP163]
gi|261607392|gb|ACX89878.1| ATP-dependent DNA helicase RecQ [Pectobacterium wasabiae WPP163]
gi|385873847|gb|AFI92367.1| ATP-dependent DNA helicase RecQ [Pectobacterium sp. SCC3193]
Length = 608
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GKD S W ++ QLI G L + I ++ V +++
Sbjct: 444 NQRIRDFGHDKLPVYGIGKDKSQEHWVSVLRQLIHLGLLNQNIT-MHSAVQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
SARP GEM + V +LK A ++ G D +L+ L +
Sbjct: 497 -SARP--------VLRGEM----PLQLAVPRVINLKPRANQKSYG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P T L NI+GV + G + IR
Sbjct: 543 RKSIADEDNIPPYVVFSDATLLEMAEMMPITAGELLNINGVGHRKLERFGAPFMNMIR 600
>gi|421591229|ref|ZP_16036119.1| ATP-dependent DNA helicase RecQ, partial [Rhizobium sp. Pop5]
gi|403703337|gb|EJZ19612.1| ATP-dependent DNA helicase RecQ, partial [Rhizobium sp. Pop5]
Length = 213
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 16/164 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G GKD + W+++ QL++ G L + Y + + + + R + Q
Sbjct: 61 VFGAGKDIPARTWQSVYRQLLAMG-LIRIDHEAYGALKLEPEARAVF---RHERQ----- 111
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
F + A E T + G+ KS G S AD L+ L ER +A+ G PY
Sbjct: 112 VFFRKDRPASERRTKKAERGERKS-------GLSGADGSLFEALRAERMAIAKSLGVPPY 164
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D T+ A RP ++ L I GV Q + +GD L+ I
Sbjct: 165 VVFPDTTLIAFATERPRSRKELLGISGVGQSKLERYGDAFLEII 208
>gi|219853011|ref|YP_002467443.1| ATP-dependent DNA helicase RecQ [Methanosphaerula palustris E1-9c]
gi|219547270|gb|ACL17720.1| ATP-dependent DNA helicase RecQ [Methanosphaerula palustris E1-9c]
Length = 606
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 14/181 (7%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
++ D D L +G GK +S ++T +L+ GYL T G +YL
Sbjct: 439 RIRDYHLDALAAYGTGKQYSKAQYRTWINELVRQGYLART-------------GDRYLVI 485
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
D LL N M+ A+E + ++ E S D L+ L R+
Sbjct: 486 GMTDKGEDLLRGKNRVMLPAQEKMKTKTTKAP-RARPAAEPVVTSARDTDLFLQLRALRR 544
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQ 182
+A G P+ + D+T++++A RP + I GV + V +G ++ IR S+
Sbjct: 545 SIAEQGGIPPFMVFPDKTLREMARIRPCDRESFLQISGVGEVKVKRYGPAFIEVIRGCSE 604
Query: 183 K 183
+
Sbjct: 605 E 605
>gi|436833691|ref|YP_007318907.1| ATP-dependent DNA helicase RecQ [Fibrella aestuarina BUZ 2]
gi|384065104|emb|CCG98314.1| ATP-dependent DNA helicase RecQ [Fibrella aestuarina BUZ 2]
Length = 742
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 10 DKLLLHGLGKDHSS--NWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDH 67
DKL L+G GK S N W +L Q+ G+L + + D Y + V+Q+G Y+ D
Sbjct: 457 DKLELYGKGKSFSEDCNVWCSLIKQITILGFLEKDV-DNYGVLRVTQKGMNYI----EDP 511
Query: 68 QPPLLLT---FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKL 124
P +L T + DA+E + + G G + D +L +L RKK+
Sbjct: 512 YPVMLSTDHDYEQAEADAKEEDNNEATAG----------SGGNAYDEELLGLLKALRKKV 561
Query: 125 ARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
A+ PY + D +++++A P+T+ +A I+GV V G + I
Sbjct: 562 AKEKNLPPYVIFQDPSMEEMATTYPTTREEMAQINGVGMGKVQKFGKPFIDLI 614
>gi|295133000|ref|YP_003583676.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
gi|294981015|gb|ADF51480.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
Length = 731
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
L G GKD ++W L Q + GYL + I + Y + ++ +G+++L QP +
Sbjct: 460 LFGKGKDKDESFWMALTRQALVAGYLKKDI-ETYGVIKLTPKGEEFL------KQPESFM 512
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
+ + D +A + ++ + D +L ML E RKK+A+ G P+
Sbjct: 513 MTHDHIFDEN------------TDNAAVTSKASTGVDDKLVGMLKELRKKVAKKNGVPPF 560
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D +I+ +AL P L NI GV + +G + I
Sbjct: 561 VVFQDPSIEDMALKYPVDLKELGNIHGVGEGKAKKYGKDFVNLI 604
>gi|449132273|ref|ZP_21768377.1| ATP-dependent DNA helicase RecQ [Rhodopirellula europaea 6C]
gi|448888483|gb|EMB18799.1| ATP-dependent DNA helicase RecQ [Rhodopirellula europaea 6C]
Length = 745
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 130/315 (41%), Gaps = 41/315 (13%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+KV+ A D+L + L + +T QLIS +L + + ++++ +++ G+
Sbjct: 457 QKVIQAGHDQLSTYNLLASEGATAVRTWIEQLISQNHLIRSGE--FQSLRLTESGRA--- 511
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
LL GE+ T++ S NE + D QL+ L R
Sbjct: 512 ----------LLKREGEV-------TLTKVSAKSSSRRPAANESWEGVDRQLFDHLRSLR 554
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
+LA G Y + GD ++++A RP++ +L NI G+ G L +I
Sbjct: 555 SELASERGVPAYVIFGDAVLRELARVRPTSIEKLTNIRGIGDRKREEFGQLFLDSIDQYC 614
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTP--AKYEAWKMWHEDGLSIQKIANYPGR 239
++ LD +++ T ++ R P A +A +++ DG S++++A+ GR
Sbjct: 615 EE--NPLDRNQTANSSPT----TIIKPRVNAAPNAAMVQASQLFR-DGCSVEEVASKMGR 667
Query: 240 SAPIKEQTVVDYLLE----------AVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVG 289
+ + + DY+ + E I + E +F A+ E +S
Sbjct: 668 AESTVNKYLSDYIQAEKITDPSQWVSTEESEAIRAALMAAEDERLRPVFEALGEEVSYEK 727
Query: 290 CKDKLKPIKNELPDD 304
+ +KNE+ DD
Sbjct: 728 IRIVASCMKNEMADD 742
>gi|300728338|ref|ZP_07061703.1| ATP-dependent DNA helicase RecQ [Prevotella bryantii B14]
gi|299774403|gb|EFI71030.1| ATP-dependent DNA helicase RecQ [Prevotella bryantii B14]
Length = 726
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 19/175 (10%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
+V + D+L G G D + W + Q + GYL + +++ Y + ++ GK+Y+ S
Sbjct: 445 IVSHKHDQLDEFGAGADMDNKLWNPVIRQALLAGYLRKDVEN-YGLLKLTASGKRYIKS- 502
Query: 64 RPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKK 123
Q P ++ + E D ++ S+ G G S D +L+ +L + RKK
Sbjct: 503 ----QEPFMIVMDNEFTD--DYVDDSNEAG-----------GTSALDPELFSILKDLRKK 545
Query: 124 LARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
A PY + D +++++A P T+ L N+ GV +G L+ I+
Sbjct: 546 TAHKHQLPPYVIFQDVSLEQMATMYPVTQEELTNVQGVGIGKAKRYGKEFLKVIK 600
>gi|312091981|ref|XP_003147175.1| hypothetical protein LOAG_11609 [Loa loa]
Length = 521
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 134/326 (41%), Gaps = 41/326 (12%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTET---IKDVYRTVSVSQQGKQYLGSARPD---HQ 68
+G GK + +WK L L GY+TET + +S+S +G+ +L +
Sbjct: 160 YGSGKHKTGVFWKELGRILRLNGYITETKCSFNNFAHLISLSDKGQNWLYGKNKELFLEP 219
Query: 69 PPLLL---TFNGEMVDAEEHETISSNVGDLKS----------SATLENEGFSEADMQLYH 115
PLL+ NGE +E++ S + K + + ++G + +D +L
Sbjct: 220 TPLLIGRIRVNGEHYIPRSNESLPSKILSFKKQREYKDYNCYNKIMHSKGITASD-ELEK 278
Query: 116 MLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQ 175
ML E R LA + + + ++ ++++A RPS L I+ + G L+
Sbjct: 279 MLFETRTNLAIEHNCSTHIIASNKCVRQLATLRPSCMQNLCMIEEMTGEKQQKFGQKLMD 338
Query: 176 TIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIAN 235
T+ N+S+D ++ R++ + T L + ++ ++ S+ +A
Sbjct: 339 TVIEFCTAHNMSMDCMT--NSTLPREIEQGMCT---LNETCTDVYRNHIKEKQSLGDLAE 393
Query: 236 YPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGL----TDEIFSAIQEAISKVGCK 291
I E TV Y + V G I D VG+ D ++ I+E S +
Sbjct: 394 I----FAISEGTVASYFVNFVKNGLPI----YLDAVGIKRQQIDIVYGIIREYGSDI--- 442
Query: 292 DKLKPIKNELPDD-ITYAHIKACLVM 316
+KPI LP D I Y +K +
Sbjct: 443 LHIKPIMEALPKDFIDYNRLKIIFTI 468
>gi|378776821|ref|YP_005185258.1| ATP-dependent DNA helicase RecQ [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|364507635|gb|AEW51159.1| ATP-dependent DNA helicase RecQ [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 608
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 27/186 (14%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S+K+ + + L G+GK+ S+N+WK LA+QLI Y + + + + ++ + L
Sbjct: 444 SEKIKQSGHEHLSTFGIGKEKSANYWKHLAWQLIHKDYCLQDMNH-FNVLRLTPKAIPLL 502
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNV--GDLKSSAT--LENEGFSEADMQLYHM 116
E+IS + DL SS +N F L+
Sbjct: 503 KGV----------------------ESISLTIPNNDLNSSKKKGKQNPSFKPESNPLFEK 540
Query: 117 LLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQT 176
L R++LA P+ + D T+ ++A +P +L N+ GV QH + +G + L+
Sbjct: 541 LRALRRQLADEENKPPFMIFSDATLHEMAQLKPKNSKQLLNVSGVGQHKLARYGHYFLEA 600
Query: 177 IRHLSQ 182
+ S+
Sbjct: 601 LNEFSE 606
>gi|227114714|ref|ZP_03828370.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|403060389|ref|YP_006648606.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402807715|gb|AFR05353.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 608
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GKD S W ++ QLI G L + I ++ V +++
Sbjct: 444 NQRIRDFGHDKLPVYGIGKDKSQEHWVSVLRQLIHLGLLNQNIT-MHSAVQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
SARP GEM + V +LK A ++ G D +L+ L +
Sbjct: 497 -SARP--------VLRGEM----PLQLAVPRVINLKPRANQKSYG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P T L NI+GV + G + IR
Sbjct: 543 RKSIADEDNIPPYVVFSDATLLEMAELMPITAGELLNINGVGHRKLERFGAPFMNMIR 600
>gi|75908908|ref|YP_323204.1| ATP-dependent DNA helicase RecQ [Anabaena variabilis ATCC 29413]
gi|75702633|gb|ABA22309.1| ATP-dependent DNA helicase RecQ [Anabaena variabilis ATCC 29413]
Length = 718
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 23/181 (12%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
K++ + DKL +G+GKD + + W+TL L+ G L +T D Y + ++
Sbjct: 444 KIIQYEHDKLSTYGIGKDRTVDEWRTLGRSLLHQGLLEQT-SDGYSVLKLN--------- 493
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
+ E++ + +S V K S E F EA+ L H L RK
Sbjct: 494 -----------ALSWEVMKRQRQVFLSVPVAQ-KLSLIQETPKFEEAEA-LLHRLRSLRK 540
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQ 182
+LA PY + D T+K + +P + + GV H + +G+ + IR Q
Sbjct: 541 QLADEQSVPPYVVFHDSTLKLMVQVQPQNLLEFSKLSGVGSHKLAQYGEKFIAEIRAYRQ 600
Query: 183 K 183
+
Sbjct: 601 E 601
>gi|168182845|ref|ZP_02617509.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum Bf]
gi|182674049|gb|EDT86010.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum Bf]
Length = 709
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 106/228 (46%), Gaps = 27/228 (11%)
Query: 86 ETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIA 145
ET+S V ++ ++NE L+ +L + RK++++ P+ + D T+K+++
Sbjct: 501 ETVSIKVSKIEKKVKVDNE--------LFEILKQLRKEISQEESVPPFMIFPDATLKELS 552
Query: 146 LARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVV 205
P+ + L I G+ + +G+ ++ I + + ++ + + K
Sbjct: 553 EYMPTKEEDLLKIKGIGERKAKVYGERFIEAITEYMNEKGIDINNMDNYESTKSNK---- 608
Query: 206 VNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWT 265
++ K Y +K +G +I++IA +K T+ ++L + +SEG +++
Sbjct: 609 -ESKIKTHVLSYNLYK----EGKTIKEIA----EERNLKAITIQEHLFKCLSEGMEVDLD 659
Query: 266 RLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKAC 313
+ + I + I KVG KLKP+K+ELP ++ Y IK+
Sbjct: 660 NF-----IKKDYEKLILDTIKKVGGT-KLKPVKDELPPEVDYMCIKSV 701
>gi|424909013|ref|ZP_18332390.1| ATP-dependent DNA helicase RecQ, partial [Rhizobium leguminosarum
bv. viciae USDA 2370]
gi|392845044|gb|EJA97566.1| ATP-dependent DNA helicase RecQ, partial [Rhizobium leguminosarum
bv. viciae USDA 2370]
Length = 538
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 20/168 (11%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D++ +G+GK+H + W+ + QL++ L + + +S+S G+Q+L +P
Sbjct: 384 DRITTYGIGKEHDNRTWRAILRQLVAL-RLIDVDLSGHGGLSISADGRQFL-----REKP 437
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
L+L + + + N +SA L +AD L+ +L +R ++AR
Sbjct: 438 SLMLR-----IPSAPRQQAPRNA----ASAAL-----PDADRGLFEVLRAKRMEIARAQN 483
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D+T+ ++A A+P + +A I GV + +G L+ I
Sbjct: 484 VPPYVIFHDKTLIELAAAKPVSVKEMAQIPGVGDTKLERYGPAFLEAI 531
>gi|386389497|ref|ZP_10074311.1| ATP-dependent DNA helicase RecQ [Haemophilus paraphrohaemolyticus
HK411]
gi|385695267|gb|EIG25829.1| ATP-dependent DNA helicase RecQ [Haemophilus paraphrohaemolyticus
HK411]
Length = 601
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 22/175 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D+L ++G+GK S ++W ++ QLI G + + I V+ Q ARP
Sbjct: 447 DQLSVYGIGKSQSQDYWVSVIRQLIHLGLIKQNI--------VNNSALQLTEEARP---- 494
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
++ +E +++ +SA + + + D L+ L RK++A
Sbjct: 495 ---------VLRSEVKLELATPRLTFSASAYSQKQATARYDKDLFARLRFLRKQIADKEN 545
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLSQK 183
PY + D T++++A P+TKA + +I+GV + + GD + I+ HL+ +
Sbjct: 546 IPPYVVFNDATLEEMAQFTPTTKAEMLDINGVGERKLERFGDAFMNLIQSHLAAR 600
>gi|288959399|ref|YP_003449740.1| ATP-dependent DNA helicase [Azospirillum sp. B510]
gi|288911707|dbj|BAI73196.1| ATP-dependent DNA helicase [Azospirillum sp. B510]
Length = 640
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 13/187 (6%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQG---- 56
++KVV D+L G+GKD + W+++ QL++ G LT ++ Y ++ G
Sbjct: 457 TEKVVQQNHDQLKTFGVGKDLTKVEWQSVYRQLVATGLLTVDLE--YGGFRLTDAGVCVI 514
Query: 57 -KQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKS---SATLENEGFSEADMQ 112
Q + R D P+L G H +VG + S + S AD
Sbjct: 515 KGQRVVRLRKD---PVLERRRGVHDALRRHTARGGSVGGVNGEGVSRSGARGALSAADDA 571
Query: 113 LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDH 172
L+H L + R LA+ PY + D T+ ++ RP A A++ GV + + D
Sbjct: 572 LWHALKDCRTALAKAQSVPPYVIFHDSTLLEMVAQRPQDHAAFAHLPGVGGRKLERYADA 631
Query: 173 LLQTIRH 179
L+ IR
Sbjct: 632 FLEVIRQ 638
>gi|186683728|ref|YP_001866924.1| ATP-dependent DNA helicase RecQ [Nostoc punctiforme PCC 73102]
gi|186466180|gb|ACC81981.1| ATP-dependent DNA helicase RecQ [Nostoc punctiforme PCC 73102]
Length = 719
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 135/311 (43%), Gaps = 45/311 (14%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S+K++ + D+L +G+GKD S + W+ LA L+ G L E D Y + ++
Sbjct: 442 SQKIIQNEHDQLSTYGIGKDKSVDEWRMLARSLLHQG-LVEQTSDGYSVLKLN------- 493
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
PL + E++ + +++ V K + +E +EA++ L L
Sbjct: 494 ---------PL----SWEVMRRQRTVSLAVPVAQ-KITWEEGSEKAAEAEI-LMQRLRSL 538
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA PY + D T+K +A +P T + GV H + +GD L IR
Sbjct: 539 RKQLADEQSVPPYVVFQDSTLKVMAQVQPKTLTEFGKLSGVGSHKLSQYGDKFLTEIRAY 598
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
Q+ L +V FT + + +T H+ GLS+ +IA +
Sbjct: 599 RQEKGLIDPPQV----KFTPSVSLPSDTEI--------VTFQLHKQGLSVDEIA----KK 642
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
I+ T++ +L + + + ++ +L V L + I + + +G L PI+ +
Sbjct: 643 RNIRPTTIIRHLTDLIEKNQPVDLNQL---VSLEHQ--QKIWQVLEVLG-DISLTPIREQ 696
Query: 301 LPDDITYAHIK 311
L + ++ I+
Sbjct: 697 LGESYSFDEIR 707
>gi|421079860|ref|ZP_15540796.1| ATP-dependent helicase RecQ [Pectobacterium wasabiae CFBP 3304]
gi|401705347|gb|EJS95534.1| ATP-dependent helicase RecQ [Pectobacterium wasabiae CFBP 3304]
Length = 608
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GKD S W ++ QLI G L + I ++ V +++
Sbjct: 444 NQRIRDFGHDKLPVYGIGKDKSQEHWVSVLRQLIHLGLLNQNIT-MHSAVQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
SARP GEM + V +LK A ++ G D +L+ L +
Sbjct: 497 -SARP--------VLRGEM----PLQLAVPRVINLKPRANQKSYG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P T L NI+GV + G + IR
Sbjct: 543 RKSIADEDNIPPYVVFSDATLLEMAELMPITAGELLNINGVGHRKLERFGAPFMNMIR 600
>gi|383450034|ref|YP_005356755.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium indicum
GPTSA100-9]
gi|380501656|emb|CCG52698.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium indicum
GPTSA100-9]
Length = 731
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 99/229 (43%), Gaps = 22/229 (9%)
Query: 4 VVDAQ-FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
++ AQ D L G G H +W L Q++ G++T+ I+ Y + +S G+ ++
Sbjct: 448 IIKAQKIDTLSCFGAGTSHDEKYWMALIRQVLVAGFITKDIES-YGVLKLSSTGENFI-- 504
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
+P + + EE +TI S KSS T AD L ML + RK
Sbjct: 505 ----KKPYSFMMTEDHEFNEEEDDTIVSAS---KSSGT--------ADEALMAMLKDLRK 549
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI-RHLS 181
K A+ G P+ + D +++ ++L P T L+N+ GV + +G + I R++
Sbjct: 550 KEAKKHGVPPFVVFQDPSLEDMSLKYPITIDELSNVHGVGEGKAKKYGKAFVDLIARYVE 609
Query: 182 QKLNLSLDGKVGEHTAFTR--KLHVVVNTRTKLTPAKYEAWKMWHEDGL 228
+ D V + T KL+++ N KL A K D L
Sbjct: 610 DNDIIRPDDLVVKSTGANSGLKLYIIQNVDRKLALDDIAAAKGLSMDDL 658
>gi|374334314|ref|YP_005091001.1| ATP-dependent DNA helicase RecQ [Oceanimonas sp. GK1]
gi|372984001|gb|AEY00251.1| ATP-dependent DNA helicase RecQ [Oceanimonas sp. GK1]
Length = 608
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 22/180 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+++V + DKL +G+GKD S W ++ QLI G LT+ I R + + Q
Sbjct: 448 TQRVREHGHDKLSTYGIGKDKSQEHWVSVLRQLIHSGLLTQNIT---RNMVL-----QLT 499
Query: 61 GSARPDHQPPLLLTFNGEM-VDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
+ARP G++ ++ E + D S E D L+ L +
Sbjct: 500 EAARP--------VLRGDVALELAEPRLVRVKQKDKAESGLTRAE-----DRALFKALRQ 546
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
RK+LA PY + D T+ ++A RP T+A L I+GV + G+ L+ +R
Sbjct: 547 LRKQLAEEADVPPYVVFNDATLTELARYRPKTEAELLGINGVGVRKLERFGEAFLELLRR 606
>gi|417854228|ref|ZP_12499548.1| RecQ [Pasteurella multocida subsp. multocida str. Anand1_goat]
gi|338218289|gb|EGP04066.1| RecQ [Pasteurella multocida subsp. multocida str. Anand1_goat]
Length = 632
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 19/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S+K+ D Q ++L ++G+GKD S W+++ QLI G++ + T+ +++ K
Sbjct: 457 SQKIKDNQHEQLSVYGIGKDKSKEHWQSVIRQLIHLGFIKQVFDHFNATLQLTENAK--- 513
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GE + ISS L S + ++ D L+ L
Sbjct: 514 ---------PIL---RGEQPLSLAMPRISS----LTSVVAPQRYAMAQYDKDLFARLRFL 557
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A Y + D T++++A +P+TKA + I+GV
Sbjct: 558 RKQIADKENIPAYIVFNDATLQEMAQYQPTTKAEMLAINGV 598
>gi|218678711|ref|ZP_03526608.1| ATP-dependent DNA helicase RecQ [Rhizobium etli CIAT 894]
Length = 218
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 16/164 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G GKD + W+++ QL++ G L D Y + + + + R
Sbjct: 66 VFGAGKDFPARTWQSVFRQLLAMG-LIRIDHDAYGALKLEPEARAVFKHERQ-------- 116
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
F + A E T + + KS G S AD L+ L ER +A+ G PY
Sbjct: 117 VFFRKDRPASERRTKKAERSERKS-------GLSGADGTLFEALRAERMSIAKSLGVPPY 169
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D T+ A RP ++ L I GV Q + +GD L+ I
Sbjct: 170 VVFPDTTLIAFATERPRSRKELLGISGVGQSKLERYGDAFLEII 213
>gi|383791075|ref|YP_005475649.1| RecQ familyATP-dependent DNA helicase [Spirochaeta africana DSM
8902]
gi|383107609|gb|AFG37942.1| ATP-dependent DNA helicase, RecQ family [Spirochaeta africana DSM
8902]
Length = 658
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG- 61
+V D+L G+G + ++ W+ L QLI+ GYLT V V G L
Sbjct: 477 RVARYGHDRLSTFGIGGELAAPAWRVLFRQLIALGYLT---------VDVENHGSLLLTE 527
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHE-----------TISSNVGDLKSSATLENE-GFSEA 109
+ARP + + L V+ S G +AT +N +SEA
Sbjct: 528 AARPLLRGEVSLQLRQAAVNGRAGRRRGVTGAGGGIGGSHQAG--SGAATADNAPQYSEA 585
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D QL+ +L R +LAR G Y + D+T++++ RP + + LA + G+ + + +
Sbjct: 586 DEQLWQVLRGWRLQLAREQGVPSYVILHDRTLRELVRQRPCSLSELAAVTGIGESKLERY 645
Query: 170 GDHLLQTI 177
G LL I
Sbjct: 646 GRDLLDVI 653
>gi|326789234|ref|YP_004307055.1| ATP-dependent DNA helicase RecQ [Clostridium lentocellum DSM 5427]
gi|326539998|gb|ADZ81857.1| ATP-dependent DNA helicase RecQ [Clostridium lentocellum DSM 5427]
Length = 733
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 145/325 (44%), Gaps = 41/325 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ +F++L +G+ KD+ + K L L++ GYL + + Y + +++ + L
Sbjct: 435 TQKIKSFKFNELTTYGVMKDYPKDTIKELISFLVAEGYL-QLVGTQYPIIQLTEASYEVL 493
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+P +L+ ET ++S + L+ ++ D+ L+ L
Sbjct: 494 KGKKPVTIKRILV-----------KETTP-----VRSRSGLD----AKVDLVLFEKLRSI 533
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R +A P+ + D T+K+++ P+T L + GV +H + +G + I+
Sbjct: 534 RYDIAHKQHIQPFMVFPDTTLKEMSSRYPTTDEALLQVSGVGEHKLNKYGQDFIAIIKTY 593
Query: 181 SQKLNLSLDGKVG----EHTAFTRKLHVVVNTRTKLTPAK---YEAWKMWHE---DGLSI 230
+ N+ + + +H+ L P K ++ K+ +E G I
Sbjct: 594 VDENNIDISKALASLSKKHSEPLSNLEGEATLDGNTIPKKSSPRDSHKLTYELYMQGKGI 653
Query: 231 QKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGC 290
+IA+ + + TV ++L++ V EG I++T+ + E I EAI + G
Sbjct: 654 HEIAD----ERNLTQMTVENHLIKCVQEGLPIDFTQF-----IPSEYEEQIIEAIEECGA 704
Query: 291 KDKLKPIKNELPDDITYAHIKACLV 315
LKPIK LP+++TY IK L+
Sbjct: 705 T-LLKPIKEMLPEEVTYTAIKFALI 728
>gi|196003676|ref|XP_002111705.1| hypothetical protein TRIADDRAFT_56013 [Trichoplax adhaerens]
gi|190585604|gb|EDV25672.1| hypothetical protein TRIADDRAFT_56013 [Trichoplax adhaerens]
Length = 1020
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/336 (20%), Positives = 134/336 (39%), Gaps = 61/336 (18%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTET-IKDVYR-TVSVSQQGKQYLGSARPD 66
F+++ ++ GK WWKTL L G+L E + +Y + +S G +L + +
Sbjct: 633 FERMAMYCKGKYRPRKWWKTLGKLLTMEGFLQEYPLTGMYGCVIGLSDLGHAWLKNTANE 692
Query: 67 HQPPLLLTFNGEMVDA-------------------EEHETISSNVGD---LKSSATLEN- 103
P L L + + + ++ N+ L + + EN
Sbjct: 693 TIPTLHLKNHASLAKTSNLLSGQTSGVYEVVPVVWQNATEVAINIAKKAMLSAQSPSENV 752
Query: 104 -EGFSEADMQ--LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDG 160
E +E + Q LY L+ R K+A G APY + ++ + +IA RP+++ L I+G
Sbjct: 753 VEDPAEVEFQRSLYTELMSLRNKVANEIGCAPYMVANNKNLLEIATIRPNSEDNLLKIEG 812
Query: 161 VNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAK---- 216
++ G ++ + L K N + + + + +L P +
Sbjct: 813 ISNTRCAKFGAVFVKKVIELCTKNNFQTNKFPDTSVSSSALNNEFAELYNRLQPVRELSE 872
Query: 217 --YEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLT 274
+ + +HE +S+ +I G ++E T+V +L +A+ G+ ++ R
Sbjct: 873 TEFMTYNYFHERNMSLSEICEKRG----LQESTIVGHLAKALLAGYPVDLNRDF------ 922
Query: 275 DEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHI 310
+LK +K LP+ IT++ +
Sbjct: 923 -----------------QRLKDVKELLPETITWSQL 941
>gi|345879659|ref|ZP_08831273.1| hypothetical protein Rifp1Sym_fy00030 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344223322|gb|EGV49811.1| hypothetical protein Rifp1Sym_fy00030 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 612
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S+++ + +L ++G+GK+ S W+++ QL+ G L I+ Y + +++Q
Sbjct: 440 SERIRNFGHQQLSVYGIGKEFSGPEWRSIFRQLVVRGLLAVDIQG-YGGLRLTEQ----- 493
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSE-ADMQLYHMLLE 119
ARP ++ E + K FS+ AD++L+ L
Sbjct: 494 --ARP-------------VLRGETRLDLRRERKPEKIKKKKVQRRFSDPADLELWEDLRT 538
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQT 176
RK+LA G PY + D T+ ++ + RP T A L NIDGV Q + +G+ L+
Sbjct: 539 LRKELAEEQGVPPYVIFHDATLAEMVIWRPETPAALLNIDGVGQVKLEHYGEEFLRA 595
>gi|300855702|ref|YP_003780686.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528]
gi|300435817|gb|ADK15584.1| predicted ATP-dependent DNA helicase [Clostridium ljungdahlii DSM
13528]
Length = 722
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 136/321 (42%), Gaps = 55/321 (17%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+KV+ FDKL HG+ K++S LI++GY+
Sbjct: 440 RKVIQYGFDKLSTHGIMKNYSKEELSNFINTLIAHGYI---------------------- 477
Query: 62 SARPDHQPPLLLTFNG-EMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S + P ++L +++ EE T+ V K TL N+ L+ +L
Sbjct: 478 SLKEGEYPTVILNPRSIKVLKGEEKVTLKEIVKAKK--ITLNND--------LFEILRVL 527
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R+++A PY + D T+K+++ P ++ ++ GV Q + +G+ L+ I+
Sbjct: 528 RREIAGEESIPPYLIFPDTTLKELSSRCPINFEQMMDVSGVGQLKLKKYGERFLEAIK-- 585
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTR--TKLTPAKYEAWKMWHEDGLSIQKIANYPG 238
N + K+ F +L N + L +E ++ +++IA
Sbjct: 586 ----NYMDESKIKPQWIFKNELKNDKNVKEGKNLKLKTHEITAEMIKEHKDLEQIA---- 637
Query: 239 RSAPIKEQTVVDYLLEAVSE----GFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKL 294
+ I TV+ ++ + E +IN+ + TDE + I + K+G KL
Sbjct: 638 KDRQITVSTVLSHITKYAEEKGVLDLNINFGGI-----FTDEEENQILKVTKKIGI-SKL 691
Query: 295 KPIKNELPDDITYAHIKACLV 315
KPIK +L +DI+Y IKA ++
Sbjct: 692 KPIKEKLSEDISYDKIKAVIL 712
>gi|261867419|ref|YP_003255341.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|365967218|ref|YP_004948780.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|416074416|ref|ZP_11584505.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|416090811|ref|ZP_11588163.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|416103119|ref|ZP_11589174.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444337220|ref|ZP_21151227.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|444345652|ref|ZP_21153662.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|444348097|ref|ZP_21155856.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|261412751|gb|ACX82122.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348006870|gb|EGY47245.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|348008390|gb|EGY48666.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348009101|gb|EGY49290.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|365746131|gb|AEW77036.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443542609|gb|ELT52921.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|443547331|gb|ELT56848.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|443547710|gb|ELT57152.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 629
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D D+L ++G+GK+H + +W+++ QL+ G + + I + T+ +++ K
Sbjct: 462 NQKIRDQHHDQLSVYGIGKEHGTEYWQSVLRQLVHLGLVRQIIGEYGNTLQLTENAK--- 518
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GE E E + + + ++A D L+ L
Sbjct: 519 ---------PIL---RGE----EPLELATPRLSSIVTTAMTPKSAVGSYDKDLFARLRFL 562
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A +P + + I+GV + G L IR
Sbjct: 563 RKQIADKENIPPYIVFNDATLQEMAQYQPVSNIEMLQINGVGAIKLERFGQAFLTLIR 620
>gi|219668952|ref|YP_002459387.1| ATP-dependent DNA helicase RecQ [Desulfitobacterium hafniense
DCB-2]
gi|219539212|gb|ACL20951.1| ATP-dependent DNA helicase RecQ [Desulfitobacterium hafniense
DCB-2]
Length = 728
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 104/225 (46%), Gaps = 25/225 (11%)
Query: 108 EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVI 167
E + L+ L R++ A G PY + D T++++A + P +A + GV + +
Sbjct: 516 EESLTLFDYLRGLRREAAAKEGLPPYMIFPDSTLREMAESCPRNRAEFLRLGGVGEKKLE 575
Query: 168 THGDHLLQTIRHLSQKLNLSLD------------GKVGEHTAFTRKLHVVVNTRTKLTPA 215
+GD LQ I K ++ K E L + +K+ P+
Sbjct: 576 KYGDIFLQGIEEFFGKQGINSSETMARTLAKPPLEKAPELQPEPAGLEESQKSESKI-PS 634
Query: 216 KYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTD 275
++++ E G S+++IA RS K T+ D+LL A EG I+W+ E
Sbjct: 635 HLITYRLYQE-GKSLEEIAKL--RS--YKVITLQDHLLRAFKEGQPISWSDFIPE----- 684
Query: 276 EIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKACLVMENCG 320
+ I AI +VG +KL+PIK+ LP ++ + IK+ ++ +N G
Sbjct: 685 DQEQLILAAIQQVGM-EKLRPIKDALPAEVDWMAIKS-VIAKNFG 727
>gi|429218110|ref|YP_007179754.1| ATP-dependent DNA helicase RecQ [Deinococcus peraridilitoris DSM
19664]
gi|429128973|gb|AFZ65988.1| ATP-dependent DNA helicase RecQ [Deinococcus peraridilitoris DSM
19664]
Length = 726
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 124/304 (40%), Gaps = 41/304 (13%)
Query: 11 KLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPP 70
+L ++GLG + S W+++ QL++ GYLT T + ++ V+ + L
Sbjct: 452 QLSVYGLGSELSERQWRSVVRQLVALGYLT-TDAGGHGSLIVTPAARALL---------- 500
Query: 71 LLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGT 130
GE ++ +KS+ E D L+ L R +LA+
Sbjct: 501 -----KGECALRLRRDSDKP----VKSARRPAAEPLGAHDEGLFAELRALRLQLAQAQKV 551
Query: 131 APYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDG 190
PY + D T+K +A +RP T +LA I GV Q + +GD L ++ + G
Sbjct: 552 PPYVIFHDATLKAMAESRPQTLTQLATISGVGQGKLERYGDAFLAVLQGHPPR------G 605
Query: 191 KVGEHTA-FTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVV 249
V + R + V V ++ + + GL+I IA R + QTV
Sbjct: 606 PVASGSGPLERSVAVAVGSKADTLEVTLQLLR----GGLTIADIA----RERQLTAQTVS 657
Query: 250 DYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKV--GCKDKLKPIKNELPDDITY 307
+L E G ++ + G +D AI++A + + KLKP++ L Y
Sbjct: 658 GHLAELARAG-EVTPQ---EATGFSDSDLRAIEQAWQALPSDARGKLKPLREALGGAYDY 713
Query: 308 AHIK 311
++
Sbjct: 714 DRLR 717
>gi|52426136|ref|YP_089273.1| RecQ protein [Mannheimia succiniciproducens MBEL55E]
gi|52308188|gb|AAU38688.1| RecQ protein [Mannheimia succiniciproducens MBEL55E]
Length = 637
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ + Q D+L ++G+GKD S +W+++ QLI G++ + I D + Q
Sbjct: 460 NQKIKENQHDELKVYGIGKDKSKEYWQSVIRQLIHLGFVQQIISDFGMGTRL-----QLT 514
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S RP GE+ E + + + + + D L+ L
Sbjct: 515 ESTRP--------VLRGEV----SLELATPRLSSITMVQAPQRNAVTNYDKDLFARLRFL 562
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T+++++L +P++K + I+GV
Sbjct: 563 RKQIADKENIPPYIVFSDATLQEMSLYQPTSKVEMLQINGV 603
>gi|387120628|ref|YP_006286511.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429733941|ref|ZP_19267991.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans Y4]
gi|385875120|gb|AFI86679.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429153932|gb|EKX96695.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans Y4]
Length = 629
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 82/178 (46%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D D+L ++G+GK+H + +W+++ QL+ G + + I + T+ +++ K
Sbjct: 462 NQKIRDQHHDQLSVYGIGKEHGTEYWQSVLRQLVHLGLVRQIIGEYGNTLQLTENAK--- 518
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GE E E + + + ++A + + L+ L
Sbjct: 519 ---------PIL---RGE----EPLELATPRLSSIVTTAMMPKSAVGSYNKDLFARLRFL 562
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A +P + + I+GV + G L IR
Sbjct: 563 RKQIADKENIPPYIVFNDATLQEMAQYQPVSNIEMLQINGVGAIKLERFGQAFLALIR 620
>gi|209965714|ref|YP_002298629.1| ATP-dependent DNA helicase RecQ [Rhodospirillum centenum SW]
gi|209959180|gb|ACI99816.1| ATP-dependent DNA helicase RecQ [Rhodospirillum centenum SW]
Length = 610
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 28/185 (15%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KVV+ +KL G+G+D S W+++ QL+++G+L
Sbjct: 446 TEKVVERGHEKLKTFGVGRDLSKAEWQSVYRQLVAHGFL--------------------- 484
Query: 61 GSARPDHQPPLLLT------FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLY 114
A P+ L+LT G+ + + L+ + +E S AD L+
Sbjct: 485 -CADPEGHGGLMLTEAATPVLKGQEAVRLRKDPAAEARRTLRPGRSGPSERLSPADDALW 543
Query: 115 HMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLL 174
H L R +LAR G PY + D T+ ++ ARP L + GV + +G+ L
Sbjct: 544 HELKALRLELARDQGVPPYVIFHDATLMEMVRARPLDAVGLGLLPGVGSRKLDRYGEEFL 603
Query: 175 QTIRH 179
+ IR
Sbjct: 604 EVIRR 608
>gi|415769436|ref|ZP_11484224.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|348657543|gb|EGY75132.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D17P-2]
Length = 363
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D D+L ++G+GK+H + +W+++ QL+ G + + I + T+ +++ K
Sbjct: 196 NQKIRDQHHDQLSVYGIGKEHGTEYWQSVLRQLVHLGLVRQIIGEYGNTLQLTENAK--- 252
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GE E E + + + ++A D L+ L
Sbjct: 253 ---------PIL---RGE----EPLELATPRLSSIVTTAMTPKSAVGSYDKDLFARLRFL 296
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A +P + + I+GV + G L IR
Sbjct: 297 RKQIADKENIPPYIVFNDATLQEMAQYQPVSNIEMLQINGVGAIKLERFGQAFLTLIR 354
>gi|345857816|ref|ZP_08810239.1| ATP-dependent DNA helicase RecQ [Desulfosporosinus sp. OT]
gi|344329093|gb|EGW40448.1| ATP-dependent DNA helicase RecQ [Desulfosporosinus sp. OT]
Length = 723
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 143/316 (45%), Gaps = 46/316 (14%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
K+++ +FD+L HG+ + K L++ GYL + + Y V +
Sbjct: 441 KIIELRFDQLSTHGIMHEVPLQEIKDRINLLVAEGYLQLSSGE-YPVVRL---------- 489
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
QP + GE A+ + +S +SS E EA+ L+ L R+
Sbjct: 490 -----QPNAISVIKGE---AKVTQKVSQ-----RSS----REEAVEAN--LFDSLRALRR 530
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQ 182
K+A PY + D T++++A P+ + I GV + + +GD L+ IR +
Sbjct: 531 KIALRENLPPYMIFADSTLREMAQLFPTDHVAMIRISGVGERKLEKYGDDFLEEIRSYIE 590
Query: 183 KLNL--SLDGKVGEHTAFTRK--LHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPG 238
K + S++ + + N+ TK+ P+ ++ + ++ E G S++ IA
Sbjct: 591 KNGIFKSIENNLIPEISMRPDPVCDAAQNSTTKM-PSHHQTYLLYQE-GYSLEDIA---- 644
Query: 239 RSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIK 298
++ + TV ++L+ +G + W D + + E + I E + +VG ++KL+PIK
Sbjct: 645 KARKVTVLTVQEHLVRCSRDGQAVIWD---DFIPIEQE--ALILEVVRQVG-REKLRPIK 698
Query: 299 NELPDDITYAHIKACL 314
L D++ + I+A L
Sbjct: 699 ELLSDEVKWFTIRAVL 714
>gi|261494329|ref|ZP_05990823.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261309978|gb|EEY11187.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. OVINE]
Length = 599
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 21/176 (11%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
K+ + Q D+L ++G+GK+ S ++W+ + QLI G + + I + Q S
Sbjct: 438 KIREHQHDQLSVYGIGKEQSQHYWQNVVRQLIHLGLIIQNIAN--------HSALQLTES 489
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
ARP + E+ ++ + ++A ++ + D L+ L RK
Sbjct: 490 ARP-------------FLRGEKQLQLALPRLGISATAFVQKQASHRYDKDLFARLRFLRK 536
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
++A + PY + D T+++IA P++K + I+GV + G + I+
Sbjct: 537 QIADLENIPPYIVFNDATLQEIAEFLPTSKVEMLEINGVGERKFERFGQAFMSLIK 592
>gi|145637733|ref|ZP_01793385.1| organic solvent tolerance protein [Haemophilus influenzae PittHH]
gi|145269082|gb|EDK09033.1| organic solvent tolerance protein [Haemophilus influenzae PittHH]
Length = 619
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+V+ Q DKL ++G+GKD S W+++ QLI G++ + I ++ + +++ K L
Sbjct: 447 NQKIVERQHDKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVISELNPILRLTESAKVIL 506
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P L + A IS K + + +G + D L+ L
Sbjct: 507 KGEEP-------LELAMPRISA-----IS------KIAHNPQRQGVANYDKDLFARLRFL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P++ + I+GV
Sbjct: 549 RKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGV 589
>gi|399927001|ref|ZP_10784359.1| ATP-dependent DNA helicase RecQ1 [Myroides injenensis M09-0166]
Length = 731
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 33/209 (15%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
G+GKDH +W L Q++ G L + I + Y + V+ QG +L + P+
Sbjct: 459 FFGIGKDHDEKYWMALIRQMLVAGLLKKDI-ETYGILKVTAQGLAFL-------EKPVSF 510
Query: 74 TFNGEMV----DAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
+ V DA+ IS N S AD L +L + RKK+A+
Sbjct: 511 MMTEDHVYSDSDADNEINISKNN--------------SVADEVLIGILKDLRKKVAKKNS 556
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLS-- 187
P+ + D +++++ L P T +ANI GV++ +G + I++ ++ ++
Sbjct: 557 VPPFVVFQDPSLEEMGLKYPITLEEMANIIGVSEGKAKKYGKDFVDVIKNYVEENDIIRP 616
Query: 188 ---LDGKVGEHTAFTRKLHVVVNTRTKLT 213
+ G ++A KL+++ N KL+
Sbjct: 617 DDLVVKSTGANSAL--KLYIIQNVDRKLS 643
>gi|168178406|ref|ZP_02613070.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum NCTC 2916]
gi|182671083|gb|EDT83057.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum NCTC 2916]
Length = 709
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 105/228 (46%), Gaps = 27/228 (11%)
Query: 86 ETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIA 145
ET+S V ++ ++NE L+ +L + RK +++ P+ + D T+K+++
Sbjct: 501 ETVSIKVSKIEKKVKVDNE--------LFEILKQLRKAISQEESVPPFMIFPDATLKELS 552
Query: 146 LARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVV 205
P+ + L I G+ + +G+ ++ I + + ++ + + K
Sbjct: 553 EYMPTKEEDLLKIKGIGERKAKVYGERFIEAITEYMNEKGIDINNMDNYESTKSNK---- 608
Query: 206 VNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWT 265
++ K Y +K +G +I++IA +K T+ ++L + +SEG +++
Sbjct: 609 -ESKIKTHILSYNLYK----EGKTIKEIA----EERNLKAITIQEHLFKCLSEGMEVDLD 659
Query: 266 RLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKAC 313
+ + I + I KVG KLKP+K+ELP ++ Y IK+
Sbjct: 660 NF-----IKKDYEKLILDTIKKVGGT-KLKPVKDELPPEVDYMCIKSV 701
>gi|242237700|ref|YP_002985881.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech703]
gi|242129757|gb|ACS84059.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech703]
Length = 607
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 24/182 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+GKD + W ++ QLI G LT+ I + Q
Sbjct: 444 NQRIREFGHDKLPVYGIGKDKTQEQWISILRQLIHLGLLTQNI--------IQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEM-VDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
SARP GE+ + TI +LK A+ ++ G D +L+ L +
Sbjct: 496 ESARP--------VLRGEVPLQLAVPRTI-----NLKPRASQKSYG-GNYDRKLFAKLRK 541
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR- 178
RK +A PY + D T+ ++A P T L NI+GV Q + G + IR
Sbjct: 542 LRKSIADEDNIPPYVVFSDATLLEMAEVMPVTPGELLNINGVGQRKLERFGVPFMTLIRE 601
Query: 179 HL 180
HL
Sbjct: 602 HL 603
>gi|226948270|ref|YP_002803361.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum A2 str.
Kyoto]
gi|226842819|gb|ACO85485.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum A2 str.
Kyoto]
Length = 709
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 105/228 (46%), Gaps = 27/228 (11%)
Query: 86 ETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIA 145
ET+S V ++ ++NE L+ +L + RK +++ P+ + D T+K+++
Sbjct: 501 ETVSIKVSKIEKKVKVDNE--------LFEILKQLRKAISQEESVPPFMIFPDATLKELS 552
Query: 146 LARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVV 205
P+ + L I G+ + +G+ ++ I + + ++ + + K
Sbjct: 553 EYMPTKEEDLLKIKGIGERKAKVYGERFIEAITEYMNEKGIDINNMDNYESTKSNK---- 608
Query: 206 VNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWT 265
++ K Y +K +G +I++IA +K T+ ++L + +SEG +++
Sbjct: 609 -ESKIKTHILSYNLYK----EGKTIKEIA----EERNLKAITIQEHLFKCLSEGMEVDLD 659
Query: 266 RLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKAC 313
+ + I + I KVG KLKP+K+ELP ++ Y IK+
Sbjct: 660 NF-----IKKDYEKLILDTIKKVGGT-KLKPVKDELPPEVDYMCIKSV 701
>gi|219870290|ref|YP_002474665.1| ATP-dependent DNA helicase RecQ, superfamily II [Haemophilus
parasuis SH0165]
gi|219690494|gb|ACL31717.1| ATP-dependent DNA helicase RecQ, superfamily II [Haemophilus
parasuis SH0165]
Length = 609
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 22/178 (12%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+K+ + Q D L ++G+GKD S +W ++ QLI G++ + I V+ Q
Sbjct: 441 QKIREYQHDTLSVYGIGKDKSQEYWISVTRQLIHLGFIRQNI--------VNHSALQLTE 492
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEA-DMQLYHMLLEE 120
ARP ++ E ++S ++ ++ + S+ D L+ L
Sbjct: 493 QARP-------------ILRGETALALASPRLSFSATTYMQKQQTSKRYDKDLFARLRFL 539
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A P+T + +I+GV + + G+ L+ IR
Sbjct: 540 RKQIADKENIPPYVVFNDATLQEMAEFMPTTADEMLSINGVGERKLERFGEAFLRLIR 597
>gi|298490702|ref|YP_003720879.1| ATP-dependent DNA helicase RecQ ['Nostoc azollae' 0708]
gi|298232620|gb|ADI63756.1| ATP-dependent DNA helicase RecQ ['Nostoc azollae' 0708]
Length = 722
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 133/313 (42%), Gaps = 47/313 (15%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ + D+L +G+GKD + + W+ L L+ G L +T D Y + ++
Sbjct: 442 NQKITLNKHDQLSTYGIGKDKTLDEWRILGRSLLHQGLLEQTT-DGYSVLKLN------- 493
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQ-LYHMLLE 119
+ E++ + +I+ + +LE A+++ L H L
Sbjct: 494 -------------ALSWEVMRKQRSVSIAVPIA---QKISLEEGNAKAAEVEVLMHRLRS 537
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
RK+LA PY + D T+K +A +P T + GV H + +GD L I+
Sbjct: 538 LRKQLADEQAVPPYVIFHDSTLKLMAQIQPKTLHEFGKLSGVGSHKLAQYGDRFLAEIQA 597
Query: 180 LSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKM-WHEDGLSIQKIANYPG 238
Q+ +L +K + V P+ E+ + +E G +IQ+IA
Sbjct: 598 YCQQQSLQ-----------PQKTNPVYYAPVDNFPSDTESTTLKLYEQGFNIQEIA---- 642
Query: 239 RSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIK 298
+ +K T++ +L + + + I+ +L + E I + + +G LKPIK
Sbjct: 643 QKRNVKTSTIIQHLSDLIEKNQSIDLNQL-----IPLERQKKIWQVLDVLG-DIALKPIK 696
Query: 299 NELPDDITYAHIK 311
+ L + ++ I+
Sbjct: 697 DYLGESYSFNEIR 709
>gi|386320424|ref|YP_006016586.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-GD]
gi|416111385|ref|ZP_11592598.1| ATP-dependent DNA helicase RecQ [Riemerella anatipestifer RA-YM]
gi|442315223|ref|YP_007356526.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-CH-2]
gi|315022665|gb|EFT35690.1| ATP-dependent DNA helicase RecQ [Riemerella anatipestifer RA-YM]
gi|325334967|gb|ADZ11241.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-GD]
gi|441484146|gb|AGC40832.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-CH-2]
Length = 734
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 95/203 (46%), Gaps = 19/203 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
G+GK+ S N+WK++ Q GY+ + I + Y + VS++G+ + D +P L+
Sbjct: 458 FFGIGKETSDNYWKSIIRQATVRGYIIKDI-ETYGVLRVSKKGQNIISGK--DKEPFLI- 513
Query: 74 TFNGEMVDAEEHE-TISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAP 132
AE+ E ++ D S ++ +G D L++ L + RKK+A+ G P
Sbjct: 514 --------AEDREYDLAQTKAD---SDQVQLQGGGGLDKVLFNQLKDLRKKIAQKQGIPP 562
Query: 133 YALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSL-DGK 191
Y + D +++ + + P T +A + GV + G + I+ + N+ D
Sbjct: 563 YTVFMDPSLEDMTVQYPITIEEIAKVYGVGEGKAKKFGKEFAEFIKKYVEDNNIERPDDM 622
Query: 192 VGEHTA--FTRKLHVVVNTRTKL 212
V + A + K+ ++ NT K+
Sbjct: 623 VLKKVANKSSHKVFIIQNTDKKI 645
>gi|445120845|ref|ZP_21379373.1| RecQ family ATP-dependent DNA helicase, partial [Prevotella
nigrescens F0103]
gi|444839226|gb|ELX66305.1| RecQ family ATP-dependent DNA helicase, partial [Prevotella
nigrescens F0103]
Length = 594
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
GLG+ + W + Q + GYL + +++ Y + ++ GKQ+L + ++
Sbjct: 326 GLGEKENPKIWNPVIRQAMLEGYLKKDVEN-YGLLKLTAAGKQFLKEPKS-----FMIVM 379
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
+ E E E++ VG G S AD +LY ML + RK LAR G Y +
Sbjct: 380 DKEFKTDEIDESM---VG-----------GTSVADPELYAMLKDLRKHLARKLGIPAYVI 425
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNL 186
D ++ ++A+ P T+ L NI GV +G + I+ ++ N+
Sbjct: 426 FQDPSLDQMAMMYPITEEELQNIQGVGVGKAKRYGKEFCELIKKYCKEKNI 476
>gi|113461847|ref|YP_719916.1| ATP-dependent DNA helicase RecQ [Haemophilus somnus 129PT]
gi|112823890|gb|ABI25979.1| ATP-dependent DNA helicase RecQ [Haemophilus somnus 129PT]
Length = 624
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ + Q DKL + G+GKD S +W+++ QLI G + + I T+ ++ L
Sbjct: 456 NQKIKEYQHDKLSVFGIGKDRSREYWQSVIRQLIHLGLIKQVIDHFNITLQLTLDSLPIL 515
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+P + + + + ++ T+ + D L+ L
Sbjct: 516 RGEQP-------------------LQLATPRISSITNAITIPKRAVTNYDKDLFARLRFL 556
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RKK+A PY + D T++++A +P+T+ + I+GV
Sbjct: 557 RKKIADKENIPPYIIFNDATLQEMAQYQPTTEQEMIQINGV 597
>gi|92118900|ref|YP_578629.1| ATP-dependent DNA helicase RecQ [Nitrobacter hamburgensis X14]
gi|91801794|gb|ABE64169.1| ATP-dependent DNA helicase RecQ [Nitrobacter hamburgensis X14]
Length = 599
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 7 AQF--DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSAR 64
AQF +++ G+G +H + W+ + QLI+ L + + +S++ G+ +L
Sbjct: 440 AQFGHNRVSTFGIGTEHDNRTWRAILRQLIAL-RLVDVDLAGHGGLSITPAGRDFLRD-- 496
Query: 65 PDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKL 124
+P L+L + K + + +EAD L+ L ++R +
Sbjct: 497 ---KPTLMLRVPA-----------APRARRQKVARSAAQSAVTEADRDLFQALRQKRMDI 542
Query: 125 ARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
AR PY + D+T+ ++A ARP+++A +A + GV + +G L I
Sbjct: 543 ARAQNVPPYVIFHDKTLIELAAARPASRAEMAKVPGVGDAKLDRYGPAFLAVI 595
>gi|153208866|ref|ZP_01947088.1| ATP-dependent DNA helicase RecQ [Coxiella burnetii 'MSU Goat Q177']
gi|212218922|ref|YP_002305709.1| ATP-dependent DNA helicase [Coxiella burnetii CbuK_Q154]
gi|120575655|gb|EAX32279.1| ATP-dependent DNA helicase RecQ [Coxiella burnetii 'MSU Goat Q177']
gi|212013184|gb|ACJ20564.1| ATP-dependent DNA helicase [Coxiella burnetii CbuK_Q154]
Length = 601
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQ---QGK 57
++ A D+L +G+GK+ S N W ++ QLI GYL + + + + R ++ +GK
Sbjct: 438 RIKRAGHDRLSTYGIGKELSQNEWYSVFRQLIHLGYLEQDLANYSILRLTPLAHSILRGK 497
Query: 58 QYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
+ L A+P + NV K A N S D L+ L
Sbjct: 498 ETLILAKPREK---------------------YNVLKKKYKAAKANSSASPYDAALFEKL 536
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
E RK +AR + AP+ + D ++ ++A P + + I+GV Q + +G L I
Sbjct: 537 RELRKAIARESRVAPFIIFSDASLVEMASRLPVSDSEFLAINGVGQKKLENYGKLFLHLI 596
Query: 178 RHLSQ 182
R Q
Sbjct: 597 REHQQ 601
>gi|114320031|ref|YP_741714.1| ATP-dependent DNA helicase RecQ [Alkalilimnicola ehrlichii MLHE-1]
gi|114226425|gb|ABI56224.1| ATP-dependent DNA helicase RecQ [Alkalilimnicola ehrlichii MLHE-1]
Length = 611
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 18/168 (10%)
Query: 11 KLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPP 70
+L + GLG D + W+TL QL++ G L E D Y + ++++ + L +P H
Sbjct: 459 RLSVFGLGADMEAGQWRTLFRQLVALG-LVEVDLDGYGGLRLAERCRPVLRGEQPLH--- 514
Query: 71 LLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGT 130
+ + + + + E D QL+ L R++LAR G
Sbjct: 515 ---------LRRDPAPARARRKRAVPETPFARPE-----DEQLFDALRVCRRELARDQGV 560
Query: 131 APYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
PY + D T++++ RP T LA I+GV + + +GD L +R
Sbjct: 561 PPYMIFHDSTLREMVELRPDTLDALAGINGVGERKLSLYGDDFLGVVR 608
>gi|431932366|ref|YP_007245412.1| ATP-dependent DNA helicase RecQ [Thioflavicoccus mobilis 8321]
gi|431830669|gb|AGA91782.1| ATP-dependent DNA helicase RecQ [Thioflavicoccus mobilis 8321]
Length = 716
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 23/179 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S ++ D D+L ++GLG+D ++ W+++ QL++ G ++ V V G L
Sbjct: 439 STRIRDFGHDRLKVYGLGQDLAATRWRSVFRQLVARGLVS---------VDVEGHGSLRL 489
Query: 61 -GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
+ARP ++ +E ++ + K EAD L+ L
Sbjct: 490 TDAARP-------------VLRGDETLSLRQDPESKKQRRAARQAPSGEADRPLWEALRT 536
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
+R++LA G APY + D + ++ RP + A +DGV + + +G L +R
Sbjct: 537 KRRELAAEQGVAPYMVFHDAVLMQMVELRPRDLTQFARLDGVGERKLAQYGADFLTVLR 595
>gi|342905065|ref|ZP_08726857.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21621]
gi|341951895|gb|EGT78444.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21621]
Length = 619
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q DKL ++G+GKD S W+++ QLI G++ + I ++ T+ +++ K L
Sbjct: 447 NQKIIERQHDKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVISELNPTLQLTESAKAIL 506
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P L + A IS K + + + + D L+ L
Sbjct: 507 KGEEP-------LELAMPRISA-----IS------KIAHNPQRQSVANYDKDLFARLRFL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P++ + I+GV
Sbjct: 549 RKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGV 589
>gi|165920611|ref|ZP_02219582.1| ATP-dependent DNA helicase RecQ [Coxiella burnetii Q321]
gi|165916813|gb|EDR35417.1| ATP-dependent DNA helicase RecQ [Coxiella burnetii Q321]
Length = 601
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQ---QGK 57
++ A D+L +G+GK+ S N W ++ QLI GYL + + + + R ++ +GK
Sbjct: 438 RIKRAGHDRLSTYGIGKELSQNEWYSVFRQLIHLGYLEQDLANYSILRLTPLAHSILRGK 497
Query: 58 QYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
+ L A+P + NV K A N S D L+ L
Sbjct: 498 ETLILAKPREK---------------------YNVLKKKYKAAKANSSASPYDAALFEKL 536
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
E RK +AR + AP+ + D ++ ++A P + + I+GV Q + +G L I
Sbjct: 537 RELRKAIARESRVAPFIIFSDASLVEMASRLPVSDSEFLAINGVGQKKLENYGKLFLHLI 596
Query: 178 RHLSQ 182
R Q
Sbjct: 597 REHQQ 601
>gi|427727826|ref|YP_007074063.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7524]
gi|427363745|gb|AFY46466.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7524]
Length = 718
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 126/310 (40%), Gaps = 46/310 (14%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+K+ + DKL +G+GKD S + W+ L L+ G L +T D Y + ++
Sbjct: 443 EKITQYEHDKLSTYGIGKDRSVDEWRMLGRSLLHQGLLEQT-SDGYSVLKLN-------- 493
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
+ E++ + +S V + +E+ +E L H L R
Sbjct: 494 ------------ALSWEVMRRQRQVLLSVPVA--QKVRLVEDHPKAEIAEALLHRLRSLR 539
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
K+LA PY + D T+K +A +P A + GV H + +G+ L IR
Sbjct: 540 KQLADEQSVPPYVVFHDSTLKLMAQVQPKNLAEFGKLSGVGSHKLAQYGEKFLSEIRAYR 599
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
Q+ + S D V T L +V + + H+ GL+I +IA S
Sbjct: 600 QEQS-STDKPVNS----TPSLSLVSGSELQTL--------QLHQQGLNIAQIAQKRNLSP 646
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNEL 301
T+ +L + + + ++ +L V L + I + + +G L PIK +L
Sbjct: 647 ----STIASHLEKLIEKNQPVDLNQL---VPLEHQ--QKIWQVLEVLG-DIALTPIKEQL 696
Query: 302 PDDITYAHIK 311
D T+ I+
Sbjct: 697 GDSYTFNEIR 706
>gi|340348782|ref|ZP_08671813.1| ATP-dependent helicase RecQ [Prevotella nigrescens ATCC 33563]
gi|339613206|gb|EGQ17991.1| ATP-dependent helicase RecQ [Prevotella nigrescens ATCC 33563]
Length = 727
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
GLG+ + W + Q + GYL + +++ Y + ++ GKQ+L + ++
Sbjct: 459 GLGEKENPKIWNPVIRQAMLEGYLKKDVEN-YGLLKLTAAGKQFLKEPKS-----FMIVM 512
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
+ E E E++ VG G S AD +LY ML + RK LAR G Y +
Sbjct: 513 DKEFKTDEIDESM---VG-----------GTSVADPELYAMLKDLRKHLARKLGIPAYVI 558
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNL 186
D ++ ++A+ P T+ L NI GV +G + I+ ++ N+
Sbjct: 559 FQDPSLDQMAMMYPITEEELQNIQGVGVGKAKRYGKEFCELIKKYCKEKNI 609
>gi|154706411|ref|YP_001424942.1| ATP-dependent DNA helicase [Coxiella burnetii Dugway 5J108-111]
gi|154355697|gb|ABS77159.1| ATP-dependent DNA helicase [Coxiella burnetii Dugway 5J108-111]
Length = 601
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQ---QGK 57
++ A D+L +G+GK+ S N W ++ QLI GYL + + + + R ++ +GK
Sbjct: 438 RIKRAGHDRLSTYGIGKELSQNEWYSVFRQLIHLGYLEQDLANYSILRLTPLAHSILRGK 497
Query: 58 QYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
+ L A+P + NV K A N S D L+ L
Sbjct: 498 ETLILAKPREK---------------------YNVLKKKYKAAKANSSASPYDAALFEKL 536
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
E RK +AR + AP+ + D ++ ++A P + + I+GV Q + +G L I
Sbjct: 537 RELRKAIARESRVAPFIIFSDASLVEMASRLPVSDSEFLAINGVGQKKLENYGKLFLHLI 596
Query: 178 RHLSQ 182
R Q
Sbjct: 597 REHQQ 601
>gi|410943280|ref|ZP_11375021.1| ATP-dependent DNA helicase RecQ [Gluconobacter frateurii NBRC
101659]
Length = 616
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 17/176 (9%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
+ L + G+GKD + NWW+ + QLI+ G ++ G+ + + D
Sbjct: 456 YQHLSVFGIGKDQTENWWRAVVRQLIARG-------------AIRTHGEHGSLALQTDIA 502
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
P+L G+ +T S + SS ENE S + ++ L + R AR
Sbjct: 503 RPIL---RGDERIRLRQDTRQSLIARTPSS-NQENESLSAEEKTVFDALRQWRLSEAREQ 558
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKL 184
PY + D ++ IA P + LA+I GV + +G+ +L I+ +S K+
Sbjct: 559 EIPPYVIFHDSVLRDIAREHPVSHQELASIKGVGTSKLDRYGESVLAVIKEISAKI 614
>gi|114619614|ref|XP_528104.2| PREDICTED: Werner syndrome ATP-dependent helicase [Pan troglodytes]
Length = 1432
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 139/341 (40%), Gaps = 67/341 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIK--DVYRTVSVSQQGKQ 58
S+++ D Q+ + L G GKD + +WWK + QLI+ G+L E + + ++++G+
Sbjct: 991 SQRLAD-QYRRHSLFGTGKDQTESWWKAFSRQLITEGFLEEVSRYNKFMKICILTKEGRN 1049
Query: 59 YLGSARPDHQPPLLLTFNGEMV--------------DAEEH------------------- 85
+L A + Q L+L N E+ +EH
Sbjct: 1050 WLHKANTESQS-LILQANEELCPKKFLLPSSKTVSSGTKEHCYNQVPVELTTEKKSNLEK 1108
Query: 86 -------ETISSNVGDLKSSATLEN--EGFS-----------EADMQLYHMLLEERKKLA 125
+ ISS K S +++ + +S E + LY L+E R+K A
Sbjct: 1109 LYSYKPCDKISSGSNISKKSIMVQSPEKAYSSSEPIISAQEQETQIVLYGKLVEARQKHA 1168
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
P L ++ + +A RP+T + IDGV++ LL+ I+H Q +
Sbjct: 1169 NKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAP-LLEVIKHFCQTNS 1227
Query: 186 LSLDGKVGEHTAFTRKLHVVV-NTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIK 244
+ D +K +V N L+ + + ++ E + ++ IA R P+
Sbjct: 1228 VQTDLFSSTKPQEEQKTSLVAKNKICTLSQSMAITYSLFQEKKMPLKSIAE--SRILPL- 1284
Query: 245 EQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
T+ +L +AV G ++ R GLT E+ I + I
Sbjct: 1285 -MTIGMHLSQAVKAGCPLDLER----AGLTPEVQKIIADVI 1320
>gi|417846212|ref|ZP_12492224.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21639]
gi|341953231|gb|EGT79743.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21639]
Length = 627
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q DKL ++G+GKD S W+++ QLI G++ + I ++ T+ +++ K L
Sbjct: 455 NQKIIERQHDKLSVYGIGKDKSKEHWQSVIRQLIHLGFVKQVISELNPTLQLTESAKAIL 514
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P L + A IS K + + + + D L+ L
Sbjct: 515 KGEEP-------LELAMPRISA-----IS------KIAHNPQRQSVANYDKDLFARLRFL 556
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P++ + I+GV
Sbjct: 557 RKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGV 597
>gi|85858064|ref|YP_460266.1| superfamily II DNA helicase [Syntrophus aciditrophicus SB]
gi|85721155|gb|ABC76098.1| superfamily II DNA helicase [Syntrophus aciditrophicus SB]
Length = 619
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 13/179 (7%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
++V++ D+L +G+G++ S +W +L + L+ G+L + + + Y + ++
Sbjct: 437 ERVLELHHDRLSTYGIGRNRSQEYWGSLLHHLVHNGFLEQDVGN-YSVLKLTD------- 488
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
+ARP + L+ V E G K+ + + + L+ L R
Sbjct: 489 AARPLLRGEQTLSMAEPRVKTETASLTHRRKGGQKA-----RDEYPDDSAALFERLRTLR 543
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
KKLA + G PY + D ++ ++A P+ I GV H +G L+ IR
Sbjct: 544 KKLADMAGVPPYIIFSDASLAQMAAFLPADPEAFQQIHGVGAHKTARYGPDFLEEIRRF 602
>gi|253996326|ref|YP_003048390.1| ATP-dependent DNA helicase RecQ [Methylotenera mobilis JLW8]
gi|253983005|gb|ACT47863.1| ATP-dependent DNA helicase RecQ [Methylotenera mobilis JLW8]
Length = 611
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 15/177 (8%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S KV ++L G+GK S W ++ QL++ GYL ET D + + +++
Sbjct: 448 SPKVTQFNHEQLSTFGIGKSLSQTQWSSVFRQLVASGYL-ETDMDAFGGLRLTE------ 500
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP + + MV + + ++ A + AD L+H L +
Sbjct: 501 -AARPVLRSEV-------MVWLRQDQETPKRASKVERGARAKEAYAHVADDPLWHALKAK 552
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R +LA+ G PY + D T+ +I RP++ + I G+ Q + +GD L+ +
Sbjct: 553 RTELAKEQGVPPYLIFHDSTLLEILNHRPTSLTEMGRISGIGQAKLTHYGDAFLEVL 609
>gi|418054291|ref|ZP_12692347.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium denitrificans
1NES1]
gi|353211916|gb|EHB77316.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium denitrificans
1NES1]
Length = 728
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 110/259 (42%), Gaps = 45/259 (17%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
++V+ D+L + G+GKD + WK L QL + GYLT + + V ++++ + L
Sbjct: 459 ERVLRNGHDRLSVFGIGKDVPVSTWKGLFRQLTAQGYLTGDDEGMGSLV-LTERARPLL- 516
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
R + + + +T V + +++S V T EN+ L+ L R
Sbjct: 517 --RGEERFLMRVTRPKSKVAKKRGASLASKV-------TRENQ-------PLFDALKALR 560
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
+KLA PY + D+T+ ++A RP T+ L +I G+ + +G +Q I
Sbjct: 561 QKLAAAAKLPPYVVAQDRTLIELAEKRPDTETALHDILGLGASKIARYGAAFMQVISQFK 620
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
+ H T +L VN A H GL ++IA+ G
Sbjct: 621 K------------HPVLTNRLSASVN-----------ATLAAHLRGLDAEQIASERG--- 654
Query: 242 PIKEQTVVDYLLEAVSEGF 260
++ TV +L EA+ G
Sbjct: 655 -LEVATVYGHLAEAIEAGL 672
>gi|161830707|ref|YP_001596401.1| ATP-dependent DNA helicase RecQ [Coxiella burnetii RSA 331]
gi|161762574|gb|ABX78216.1| ATP-dependent DNA helicase RecQ [Coxiella burnetii RSA 331]
Length = 601
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQ---QGK 57
++ A D+L +G+GK+ S N W ++ QLI GYL + + + + R ++ +GK
Sbjct: 438 RIKRAGHDRLSTYGIGKELSQNEWYSVFRQLIHLGYLEQDLANYSILRLTPLAHSILRGK 497
Query: 58 QYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
+ L A+P + NV K A N S D L+ L
Sbjct: 498 ETLILAKPREK---------------------YNVLKKKYKAAKANSSASPYDAALFEKL 536
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
E RK +AR + AP+ + D ++ ++A P + + I+GV Q + +G L I
Sbjct: 537 RELRKAIARESRVAPFIIFSDASLVEMASRLPVSDSEFLAINGVGQKKLENYGKLFLHLI 596
Query: 178 RHLSQ 182
R Q
Sbjct: 597 REHQQ 601
>gi|189462633|ref|ZP_03011418.1| hypothetical protein BACCOP_03325 [Bacteroides coprocola DSM 17136]
gi|189430794|gb|EDU99778.1| ATP-dependent DNA helicase RecQ [Bacteroides coprocola DSM 17136]
Length = 607
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++++ +DKL +G+G+D + W+ Q+++ GY E + + +++ G++ L
Sbjct: 432 TQEIIERGYDKLKTYGVGRDIPARDWQDYLLQMLNLGYF-EVAYNEKNHLKITEAGRKVL 490
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEG-FSEADMQLYHMLLE 119
H+ LL+ E A+ T L + A F D QL+ L +
Sbjct: 491 FG----HERALLVVIKREEYAAKG--TRKKQKQPLATEALFPTPMVFDNEDEQLFEELRQ 544
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
RKKLA Y + D+T+ +A +RP+T I G+ ++ +G ++ IR
Sbjct: 545 LRKKLADQQAIPAYIVLSDKTLHLLASSRPTTVEAFGEISGIGEYKRDKYGKDFIEVIRK 604
Query: 180 LSQ 182
++
Sbjct: 605 FTR 607
>gi|29653815|ref|NP_819507.1| ATP-dependent DNA helicase [Coxiella burnetii RSA 493]
gi|29541078|gb|AAO90021.1| ATP-dependent DNA helicase [Coxiella burnetii RSA 493]
Length = 601
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQ---QGK 57
++ A D+L +G+GK+ S N W ++ QLI GYL + + + + R ++ +GK
Sbjct: 438 RIKRAGHDRLSTYGIGKELSQNEWYSVFRQLIHLGYLEQDLANYSILRLTPLAHSILRGK 497
Query: 58 QYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
+ L A+P + NV K A N S D L+ L
Sbjct: 498 ETLILAKPREK---------------------YNVLKKKYKAAKANSSASPYDAALFEKL 536
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
E RK +AR + AP+ + D ++ ++A P + + I+GV Q + +G L I
Sbjct: 537 RELRKAIARESRVAPFIIFSDASLVEMASRLPVSDSEFLAINGVGQKKLENYGKLFLHLI 596
Query: 178 RHLSQ 182
R Q
Sbjct: 597 REHQQ 601
>gi|404371546|ref|ZP_10976850.1| ATP-dependent DNA helicase RecQ [Clostridium sp. 7_2_43FAA]
gi|404301376|gb|EEH97528.2| ATP-dependent DNA helicase RecQ [Clostridium sp. 7_2_43FAA]
Length = 810
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 85/186 (45%), Gaps = 31/186 (16%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
KV++A+F++L +G+ KD+SS+ K LIS+GY+ + ++ Y + ++ +
Sbjct: 440 KVINAKFNELSTYGIMKDYSSDELKVFINTLISHGYI-DYVEGTYPVIKLNNKS------ 492
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
+ GE E + +KS++ N L+ +L E R
Sbjct: 493 ---------IKVIKGE-------ENVQFKEVKIKSTSNDNN--------TLFEILRELRF 528
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQ 182
+A G PY + GD T+++++ P L NI GV + + +G+ + TI+
Sbjct: 529 NIANEEGVPPYIIFGDNTLREMSTKYPLNLEELMNISGVGEVKLNKYGEIFINTIKDYVD 588
Query: 183 KLNLSL 188
+ N+ +
Sbjct: 589 ENNIKI 594
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 92/217 (42%), Gaps = 19/217 (8%)
Query: 108 EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVI 167
E++ +L L R++ A + P A+ T+K+I+ P L +I G+ +
Sbjct: 611 ESNKELLSRLKVIRREFANKENSLPQAILSLNTLKEISGRFPLNLEELKDISGIGPKKIT 670
Query: 168 THGDHLLQTIRHL--SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHE 225
+GD +++ +R + LN+ + K K V+++ + + E +
Sbjct: 671 KYGDEIIEEVRRFVVEKDLNIVFEEK--------GKRKVIIDGEKR---SNEEIAIDMIK 719
Query: 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
DG+++ I+ S V DY+ E +N + + ++I A +
Sbjct: 720 DGVNLDLISENIEVSISTILGYVTDYIKENGEFSISLNLNKYYNHDD-KEKILKACE--- 775
Query: 286 SKVGCKDKLKPIKNELPDDITYAHIKACLVMENCGIS 322
V +K+ +K LPD+I Y I+A ++ E +S
Sbjct: 776 --VNGYEKVSILKKYLPDNIKYESIRAVILEEYFKVS 810
>gi|212213044|ref|YP_002303980.1| ATP-dependent DNA helicase [Coxiella burnetii CbuG_Q212]
gi|212011454|gb|ACJ18835.1| ATP-dependent DNA helicase [Coxiella burnetii CbuG_Q212]
Length = 601
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQ---QGK 57
++ A D+L +G+GK+ S N W ++ QLI GYL + + + + R ++ +GK
Sbjct: 438 RIKRAGHDRLSTYGIGKELSQNEWYSVFRQLIHLGYLEQDLANYSILRLTPLAHSILRGK 497
Query: 58 QYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
+ L A+P + NV K A N S D L+ L
Sbjct: 498 ETLILAKPREK---------------------YNVLKKKYKAAKANSSASPYDAALFEKL 536
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
E RK +AR + AP+ + D ++ ++A P + + I+GV Q + +G L I
Sbjct: 537 RELRKAIARESRVAPFIIFSDASLVEMASRLPVSDSEFLAINGVGQKKLENYGKLFLHLI 596
Query: 178 RHLSQ 182
R Q
Sbjct: 597 REHQQ 601
>gi|345781559|ref|XP_539984.3| PREDICTED: Werner syndrome ATP-dependent helicase [Canis lupus
familiaris]
Length = 1412
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 143/355 (40%), Gaps = 71/355 (20%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTET--IKDVYRTVSVSQQGKQYLGSARPDHQPPL 71
L G GKD +WWK L+ QL++ G+L E + R +++++G+ +L A + L
Sbjct: 975 LFGTGKDQKESWWKALSRQLMAEGFLVEVPGRQKFIRICTLTEKGRCWLHEANREFPKKL 1034
Query: 72 LLTFNGEMV--------------DAEEHET--------------------------ISSN 91
L N E+ AE+H + ISS
Sbjct: 1035 KLEANEELCPRVFLLPSSKTVPPGAEQHSSNRVPIELTAEKKSNLEKMYSYKASDKISSG 1094
Query: 92 VGDLKSSATLENEGFS-------------EADMQLYHMLLEERKKLARVTGTAPYALCGD 138
+ S + + G S E LY +L+E R+K A P L +
Sbjct: 1095 SNIPEKSIIVHSPGKSYKSSEPVISAEEQETQTVLYGILVEARQKHAGKMDVPPAILATN 1154
Query: 139 QTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAF 198
+ + ++A RP+T + I+GV++ T LL+ I+H Q N+ D +
Sbjct: 1155 KILLEMAKMRPTTFENMKRINGVSEGKA-TMLTPLLEVIKHFCQINNVQSD-LFSSTKPW 1212
Query: 199 TRKLHVVV--NTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAV 256
+ VV N L+ + + ++ E +S+ I+ R P+ V +L +AV
Sbjct: 1213 EEPRNSVVEENETCSLSQSAAITYSLFQEKKMSL--ISLTEDRIMPL--TAVGMHLTQAV 1268
Query: 257 SEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK---DKLKPIKNELPDDI-TY 307
G ++ R GLT E+ I + I +K+K I+ +P++I TY
Sbjct: 1269 KAGCPLDMER----AGLTPEVQKIITDVIRNPPINSDINKIKLIRKLVPENIDTY 1319
>gi|429750375|ref|ZP_19283426.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 332
str. F0381]
gi|429165304|gb|EKY07364.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 332
str. F0381]
Length = 727
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 8 QFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDH 67
+ D+ G+GKD +W L Q++ G + + I + Y + ++ +GK++L
Sbjct: 452 RIDEQEFFGIGKDKDDAYWMALLRQVMVNGLIRKDI-ETYGVMFITDKGKEFLVEV---- 506
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
P ++T + E E SN N S AD L ML + RKK+A+
Sbjct: 507 -PSFMMTEDHTF----EEEPDESN-----------NNTVSVADPVLLEMLKDLRKKVAKQ 550
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
G P+ + D +++ +AL P T L N+ G+ + +G ++ I
Sbjct: 551 KGVPPFVVFQDPSLEDMALKYPITIQELTNVHGIGEGKAKKYGGEFVKLI 600
>gi|251798446|ref|YP_003013177.1| ATP-dependent DNA helicase RecQ [Paenibacillus sp. JDR-2]
gi|247546072|gb|ACT03091.1| ATP-dependent DNA helicase RecQ [Paenibacillus sp. JDR-2]
Length = 721
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 137/318 (43%), Gaps = 49/318 (15%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNW-WKTLA---YQLISYGYLTETIKDVYRTVSVSQQGK 57
K++++ D+L +GL SNW K +A Y L++ GYL + + Y TVS++
Sbjct: 439 KRLLEFGLDRLTTYGL----FSNWPEKEIADWLYWLVAEGYLRMS-EGQYPTVSLT---- 489
Query: 58 QYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
SA P +L N ++ S GD ++++ L+ L
Sbjct: 490 ---ASALP------ILEGNETVMQRLRTSVRRSASGDGGAASS-----------PLFDAL 529
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ RK+ A P+ L D T+K++A RP T+ +L G+ +G+ +L I
Sbjct: 530 KQWRKEAAARENVPPFMLFFDATLKELADVRPVTEEQLMQTKGIGAAKASKYGEEVLAII 589
Query: 178 R-HLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANY 236
+ H N ++ ++ TP+ + + ++ GL IA
Sbjct: 590 QAHAGSGGN----NATASINTVPKRPAARPPASSEETPSHVQTLERFNA-GLETAAIAEE 644
Query: 237 PGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKP 296
G + T+ +L+ EG+++ W+R+ E + I + I ++G DKL+P
Sbjct: 645 RG----LSRVTIEGHLIRCSEEGYELEWSRIIPE-----QYEDRIVQVIGELGW-DKLRP 694
Query: 297 IKNELPDDITYAHIKACL 314
+K+ LP+++ Y I +
Sbjct: 695 LKDALPEEVDYFAIHGVI 712
>gi|383768835|ref|YP_005447898.1| ATP-dependent DNA helicase [Bradyrhizobium sp. S23321]
gi|381356956|dbj|BAL73786.1| ATP-dependent DNA helicase [Bradyrhizobium sp. S23321]
Length = 621
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 10/178 (5%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV DKL + G+G++ + W+T+ QL++ G+L ++ + + + +++ +
Sbjct: 452 TEKVTQFGHDKLSVFGIGRELNEKQWRTVLRQLVAMGHL-QSDSEAFGALKLTESAR--- 507
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
G R + + L G + + + S GDL +A N + D +L L
Sbjct: 508 GVLRGETEVWLREEAPGTRIRSSRAK---SRRGDLAPAA---NTPQGDVDPELRARLRSW 561
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
R +AR G Y + D TI I A P+T L N+ G+ + +GD LLQ +R
Sbjct: 562 RSDIARERGVPAYVVLHDATIDGIVRAWPTTLDELRNVPGIGDKKLEHYGDELLQIVR 619
>gi|348578015|ref|XP_003474779.1| PREDICTED: Werner syndrome ATP-dependent helicase-like [Cavia
porcellus]
Length = 1486
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 82/356 (23%), Positives = 141/356 (39%), Gaps = 72/356 (20%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTET--IKDVYRTVSVSQQGKQYLGSA-------- 63
L G GKD + +WWK A L++ G+L E +T +++ +G+ +L A
Sbjct: 979 LFGAGKDQTESWWKAFARHLMTEGFLAEVPGSSRFIKTCTLTVKGRNWLVKASTESPQRL 1038
Query: 64 ----------------------------RPDHQPPLLLTFN-----GEMVDAEEHETISS 90
P +Q P+ LT +M + ++ ISS
Sbjct: 1039 ILEASEELCPKKKFLLPSSHTVSSGIEHHPSNQIPIRLTAEVCSNLEKMFSYKANDKISS 1098
Query: 91 NVGDLKSSATLENEGFS-------------EADMQLYHMLLEERKKLARVTGTAPYALCG 137
+ K S + G + + LY L+E R+K A P L
Sbjct: 1099 GISIPKKSIMTQLPGNTYGSSGAVISAQEQKTQTVLYGKLVEARQKHANKRDVPPAILAT 1158
Query: 138 DQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTA 197
++ + +A RP+T L IDGV++ T LL+ I+H Q+ ++ D
Sbjct: 1159 NKLLVDMAKMRPTTVENLKLIDGVSEGKA-TMLAPLLEVIKHFCQENSVQTDLFSSTKPQ 1217
Query: 198 FTRKLHVVVN-TRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVV-DYLLEA 255
+K VN + + + + ++ E +S+ +A R+ P+ TVV +L +
Sbjct: 1218 EEQKKSPEVNHEKCSFSQSVAVTYSLFQEKKMSLDSVAK--NRTLPL---TVVGQHLAQV 1272
Query: 256 VSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK---DKLKPIKNELPDDI-TY 307
V G+ ++ R GLT E+ I I K+K I+ +P++I TY
Sbjct: 1273 VKAGYSLDMER----SGLTPEVQKIITAVIQNPPVNSDMSKIKLIRMLVPENIDTY 1324
>gi|417838967|ref|ZP_12485182.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M19107]
gi|341955862|gb|EGT82310.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M19107]
Length = 619
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q DKL ++G+GKD S W+++ QLI G++ + I ++ T+ +++ K L
Sbjct: 447 NQKIIERQHDKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVIGELNPTLQLTESAKAIL 506
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P L + A IS K + + + + D L+ L
Sbjct: 507 KGEEP-------LELAMPRISA-----IS------KIAHNPQRQSVANYDKDLFARLRFL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P++ + I+GV
Sbjct: 549 RKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGV 589
>gi|399545042|ref|YP_006558350.1| ATP-dependent DNA helicase recQ [Marinobacter sp. BSs20148]
gi|399160374|gb|AFP30937.1| ATP-dependent DNA helicase recQ [Marinobacter sp. BSs20148]
Length = 686
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 26/171 (15%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSA----RPDHQP 69
+G+GKD ++N WK++ QL++ GYL D Y + +++Q + L G A R D +P
Sbjct: 535 YGIGKDLTANEWKSVFRQLVANGYLRAD-PDGYGALQLTEQCRPLLKGEASVQLRKDPEP 593
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
P S+ G +S+A++ + D + L RK+LA G
Sbjct: 594 P-----------------KSTAKGSSRSAASVREQ---ITDHDGWEALRACRKQLADKQG 633
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
PY + D T+ + RP+T LA + GV + +G+ LQT+ L
Sbjct: 634 VPPYVIFHDTTLFDMLERRPATLEALAEVSGVGAAKLEKYGELFLQTLNSL 684
>gi|427707114|ref|YP_007049491.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7107]
gi|427359619|gb|AFY42341.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7107]
Length = 718
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 116/266 (43%), Gaps = 44/266 (16%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ + DKL +G+GKD S W+ L L+ G L +T D Y + ++ + +
Sbjct: 442 NQKITQYEHDKLSTYGIGKDRSVEEWRMLGRSLLHQGLLEQT-SDGYSVLKLNAHSWEVM 500
Query: 61 GSARPDHQPPLLLTFNGEM-VDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
R EM V A + K S E+ +EA+ +L H L
Sbjct: 501 RRQR-----------QVEMAVSATQ-----------KLSLIEESPKAAEAE-ELLHKLRS 537
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
RK+LA PY + D T+K +A +P T + + GV H + +G+ L IR
Sbjct: 538 LRKELADEQSVPPYVIFHDSTLKLMAQVQPKTLVEFSKLSGVGSHKLAQYGEKFLAEIRT 597
Query: 180 LSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGR 239
DGK ++A V+ + + ++ + + ++ H+ GLS+ +IA +
Sbjct: 598 YR-------DGKNSVNSAVD-----VLPSLSLISGTELQTLQL-HQQGLSVAEIA----K 640
Query: 240 SAPIKEQTVVDYLLEAV--SEGFDIN 263
+ TVV +L + ++ D+N
Sbjct: 641 QRKLSPATVVSHLARLIEKNQPVDLN 666
>gi|393908486|gb|EJD75078.1| CBR-WRN-1 protein [Loa loa]
Length = 1137
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 134/326 (41%), Gaps = 41/326 (12%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTET---IKDVYRTVSVSQQGKQYLGSARPD---HQ 68
+G GK + +WK L L GY+TET + +S+S +G+ +L +
Sbjct: 776 YGSGKHKTGVFWKELGRILRLNGYITETKCSFNNFAHLISLSDKGQNWLYGKNKELFLEP 835
Query: 69 PPLLL---TFNGEMVDAEEHETISSNVGDLKS----------SATLENEGFSEADMQLYH 115
PLL+ NGE +E++ S + K + + ++G + +D +L
Sbjct: 836 TPLLIGRIRVNGEHYIPRSNESLPSKILSFKKQREYKDYNCYNKIMHSKGITASD-ELEK 894
Query: 116 MLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQ 175
ML E R LA + + + ++ ++++A RPS L I+ + G L+
Sbjct: 895 MLFETRTNLAIEHNCSTHIIASNKCVRQLATLRPSCMQNLCMIEEMTGEKQQKFGQKLMD 954
Query: 176 TIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIAN 235
T+ N+S+D ++ R++ + T L + ++ ++ S+ +A
Sbjct: 955 TVIEFCTAHNMSMDCMT--NSTLPREIEQGMCT---LNETCTDVYRNHIKEKQSLGDLAE 1009
Query: 236 YPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGL----TDEIFSAIQEAISKVGCK 291
I E TV Y + V G I D VG+ D ++ I+E S +
Sbjct: 1010 I----FAISEGTVASYFVNFVKNGLPI----YLDAVGIKRQQIDIVYGIIREYGSDIL-- 1059
Query: 292 DKLKPIKNELPDD-ITYAHIKACLVM 316
+KPI LP D I Y +K +
Sbjct: 1060 -HIKPIMEALPKDFIDYNRLKIIFTI 1084
>gi|148378986|ref|YP_001253527.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum A str. ATCC
3502]
gi|153931316|ref|YP_001383369.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum A str. ATCC
19397]
gi|153936581|ref|YP_001386916.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum A str. Hall]
gi|148288470|emb|CAL82548.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502]
gi|152927360|gb|ABS32860.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum A str. ATCC
19397]
gi|152932495|gb|ABS37994.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum A str. Hall]
Length = 709
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 99/206 (48%), Gaps = 19/206 (9%)
Query: 108 EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVI 167
+AD +L+ +L + RK +++ P+ + D T+K+++ P+ + L I G+ +
Sbjct: 515 KADNELFEILKQLRKTISQEESVPPFMIFPDATLKELSEYMPTKEEDLLKIKGIGERKAK 574
Query: 168 THGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDG 227
+G+ ++ I + + ++ +A + K ++ K Y +K +G
Sbjct: 575 VYGERFIEAITEYMNEKGIDINNMDSYGSAKSNK-----ESKIKTHVLSYNLYK----EG 625
Query: 228 LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISK 287
+I++I+ +K T+ ++L + +SEG +++ + + I + I K
Sbjct: 626 KTIKEIS----EERNLKAITIQEHLFKCLSEGMEVDLDNF-----IKKDYEKLILDTIKK 676
Query: 288 VGCKDKLKPIKNELPDDITYAHIKAC 313
VG KLKP+K+ELP ++ Y IK+
Sbjct: 677 VGGT-KLKPVKDELPPEVDYMCIKSV 701
>gi|378696929|ref|YP_005178887.1| ATP-dependent DNA helicase [Haemophilus influenzae 10810]
gi|301169448|emb|CBW29048.1| ATP-dependent DNA helicase [Haemophilus influenzae 10810]
Length = 619
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+V+ Q KL ++G+GKD S W+++ QLI G++ + I ++ T+ +++ K L
Sbjct: 447 NQKIVERQHHKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVISELNPTLQLTESAKVIL 506
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P L + A IS K + + +G + D L+ L
Sbjct: 507 KGEEP-------LELAMPRISA-----IS------KIAHNPQRQGVANYDKDLFARLRFL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P++ + I+GV
Sbjct: 549 RKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGV 589
>gi|421254067|ref|ZP_15709061.1| RecQ [Pasteurella multocida subsp. multocida str. Anand1_buffalo]
gi|401693064|gb|EJS87299.1| RecQ [Pasteurella multocida subsp. multocida str. Anand1_buffalo]
Length = 632
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 19/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D Q ++L ++G+GKD S W+++ QLI G++ + T+ +++ K
Sbjct: 457 NQKIKDNQHEQLSVYGIGKDKSKEHWQSVIRQLIHLGFIKQVFDHFNATLQLTENAK--- 513
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GE + ISS L S + ++ D L+ L
Sbjct: 514 ---------PIL---RGEQPLSLAMPRISS----LTSVVAPQRYAMAQYDKDLFARLRFL 557
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A Y + D T++++A +P+TKA + I+GV
Sbjct: 558 RKQIADKENIPAYIVFNDATLQEMAQYQPTTKAEMLAINGV 598
>gi|298209031|ref|YP_003717210.1| ATP-dependent DNA helicase [Croceibacter atlanticus HTCC2559]
gi|83848958|gb|EAP86827.1| putative ATP-dependent DNA helicase [Croceibacter atlanticus
HTCC2559]
Length = 734
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 17/164 (10%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
L G GKD +++W L Q++ GYL + I+ Y V ++++GK YL + +
Sbjct: 460 LFGKGKDKDASFWMALLRQVLVAGYLKKDIES-YGVVKLTKRGKDYLNNPQS-------- 510
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
+ +E+H S+ GD+ + ++ G D +L ML + RK +A+ P+
Sbjct: 511 -----FMMSEDHVYDSNAEGDIIVATKSKSTG---PDEKLMKMLKDLRKSVAKRKELPPF 562
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D +++ + + P T L+NI GV + +G ++ I
Sbjct: 563 VIFQDPSLEDMTVKYPITIEELSNIHGVGEGKAKKYGAQFVKLI 606
>gi|354595778|ref|ZP_09013795.1| ATP-dependent DNA helicase RecQ [Brenneria sp. EniD312]
gi|353673713|gb|EHD19746.1| ATP-dependent DNA helicase RecQ [Brenneria sp. EniD312]
Length = 610
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 20/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+G+D S W ++ QLI G L + I Y + +++
Sbjct: 444 NQRIREFAHDKLPVYGIGRDKSQEHWVSVLRQLIHLGLLQQNIAQ-YSALQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
SARP GE+ + V +LK A + D +L+ L +
Sbjct: 497 -SARP--------VLRGEV----PLQLAVPRVINLKPRAASQKSYGGNYDRKLFAKLRKL 543
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P T A L NI+GV + G + IR
Sbjct: 544 RKSIADEANIPPYVVFSDATLLEMAELMPITAAELLNINGVGHRKLERFGAPFMSVIR 601
>gi|158338684|ref|YP_001519861.1| ATP-dependent DNA helicase RecQ [Acaryochloris marina MBIC11017]
gi|158308925|gb|ABW30542.1| ATP-dependent DNA helicase RecQ [Acaryochloris marina MBIC11017]
Length = 736
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 27/189 (14%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV+ + D+L +G+GKD + + W+ L L+ G +TET D Y + +++ + L
Sbjct: 458 NKKVLQRRHDQLSTYGIGKDKTVDQWRLLGRTLLHQGLVTET-TDGYPVLKLNELSWEVL 516
Query: 61 GSARPDHQP-PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
R P P+ T + EE E L+ L E
Sbjct: 517 RHQRSVFVPVPVAPTQDRPNARREEAEA-------------------------LFQQLRE 551
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
RK+LA PY + D ++K +A +P T A I GV + + +G IR
Sbjct: 552 LRKELADQQSVPPYVIFADSSLKLMAQQQPQTMVEFAKISGVGKRKLEQYGQQFTAAIRT 611
Query: 180 LSQKLNLSL 188
Q+ L +
Sbjct: 612 HRQEQGLPV 620
>gi|451820169|ref|YP_007456370.1| putative ATP-dependent DNA helicase RecQ [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451786148|gb|AGF57116.1| putative ATP-dependent DNA helicase RecQ [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 818
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 37/218 (16%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV+ F +L +GL K++SS+ KT LIS+GY+ I+ Y +S++++ + L
Sbjct: 440 NKKVIQFNFHELSTYGLMKEYSSDQLKTFINTLISHGYIN-VIEGTYPVLSLNEKSRMVL 498
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S E V+ +E + E + D +L+ +L
Sbjct: 499 TSQ--------------EKVELKEFKV----------------EQKVKEDNELFEILRRI 528
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R LA PY + GD T+K++A P ++ + NI GV + +G I
Sbjct: 529 RHDLASENNVPPYVIFGDITLKEMASKFPVNRSAMLNISGVGEVKYSKYGKAFEDVIIAF 588
Query: 181 SQKLNLSL-DGKVGEHTAFT-----RKLHVVVNTRTKL 212
++ N+ + D V E + T +L +VV T L
Sbjct: 589 VKEHNIEIPDNNVEEEKSNTDEVNDEELKLVVTTDLTL 626
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 92/211 (43%), Gaps = 23/211 (10%)
Query: 109 ADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVIT 168
D+ LY+ L RK+LA+ G P A+ T+K+I+ P + +L +I G+ +
Sbjct: 622 TDLTLYNKLDILRKQLAKKEGVLPQAIITMNTLKEISGRYPDSLEKLKDISGMGPKKISE 681
Query: 169 HGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGL 228
+GD +++ ++ + ++ +D ++ V+++ + A M E +
Sbjct: 682 YGDSIIKIVKDYIDENHIQVDW------MERKRRKVIIDGEQRENNQI--AIDMLREK-I 732
Query: 229 SIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKV 288
+I K++ S V DY+ + F+I+ DE +S +
Sbjct: 733 NIHKVSEKLELSISTVLGYVTDYIRQFGENIFEIDL----------DEFYSEEDAKLISA 782
Query: 289 GCK----DKLKPIKNELPDDITYAHIKACLV 315
C+ +K+ +K ELP I Y I++ ++
Sbjct: 783 ACEKHGYEKINVLKKELPSYIKYESIRSVIL 813
>gi|62088884|dbj|BAD92889.1| Werner syndrome protein variant [Homo sapiens]
Length = 842
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 139/341 (40%), Gaps = 67/341 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIK--DVYRTVSVSQQGKQ 58
S+++ D Q+ + L G GKD + +WWK + QLI+ G+L E + + +++++G+
Sbjct: 401 SQRLAD-QYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRN 459
Query: 59 YLGSARPDHQPPLLLTFNGEMV--------------DAEEH------------------- 85
+L A + Q L+L N E+ +EH
Sbjct: 460 WLHKANTESQ-SLILQANEELCPKKLLLPSSKTVSSGTKEHCYNQVPVELSTEKKSNLEK 518
Query: 86 -------ETISSNVGDLKSSATLEN--EGFS-----------EADMQLYHMLLEERKKLA 125
+ ISS K S +++ + +S E + LY L+E R+K A
Sbjct: 519 LYSYKPCDKISSGSNISKKSIMVQSPEKAYSSSQPVISAQEQETQIVLYGKLVEARQKHA 578
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
P L ++ + +A RP+T + IDGV++ L + I+H Q +
Sbjct: 579 NKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAP-LWEVIKHFCQTNS 637
Query: 186 LSLDGKVGEHTAFTRKLHVVV-NTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIK 244
+ D +K +V N L+ + + ++ E + ++ IA R P+
Sbjct: 638 VQTDLFSSTKPQEEQKTSLVAKNKICTLSQSMAITYSLFQEKKMPLKSIAE--SRILPL- 694
Query: 245 EQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
T+ +L +AV G ++ R GLT E+ I + I
Sbjct: 695 -MTIGMHLSQAVKAGCPLDLER----AGLTPEVQKIIADVI 730
>gi|403068682|ref|ZP_10910014.1| ATP-dependent DNA helicase [Oceanobacillus sp. Ndiop]
Length = 715
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 102 ENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
EN + E L+ L RK++A PY L D T+K ++ P TK + I GV
Sbjct: 514 ENTDYHE---DLFTELRTLRKRIAEEKNLPPYVLFSDATLKDLSRYFPVTKEDMLEIKGV 570
Query: 162 NQHLVITHGDHLLQTIRH-------LSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTP 214
+ +G+ L IR + QK+ ++ + + K + R P
Sbjct: 571 GEKKYDQYGEEFLTVIREWRKAHPDVKQKI------RIADSASARPKTKKATDDR----P 620
Query: 215 AKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLT 274
+ +++M+ + G SI+ IA S + T+ +++ +A EG + W +
Sbjct: 621 SHLISYQMF-QSGKSIKDIAAIRDFS----KVTIENHIFKAFQEGHPLAWG-----IFFN 670
Query: 275 DEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKACLV 315
++ +A+ A SK+ + KLKP+K LP++ Y IKA LV
Sbjct: 671 EQEEAAVLLAHSKLD-EPKLKPLKEALPEEFDYTKIKAALV 710
>gi|37522198|ref|NP_925575.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421]
gi|35213198|dbj|BAC90570.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421]
Length = 746
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 126/318 (39%), Gaps = 46/318 (14%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D+L +G+G D S W L L+ G L ET
Sbjct: 455 TQKIRTQGHDRLSTYGIGADLSQAEWLHLGRTLVHQGLLIETT----------------- 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
D P L L V + ++ + +S + +A L+ L
Sbjct: 498 -----DGYPVLKLNALSWEVLRRQRTVTAARLPARPTSPQPADAAADDAAQGLFEHLRRL 552
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA PY + D +K +A RP T A+ I GV + IR
Sbjct: 553 RKRLADEQNVPPYVVFADAALKAMAQRRPQTMAQFLAIPGVGTRKAEAYFTPFTAEIRTY 612
Query: 181 SQKLNLSLDGKVGE-------HTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKI 233
+ L L+ + GE A + + V+ + LT +W + GL++++I
Sbjct: 613 CEALALAPEPAHGEISPPEPPRRARSPQPAEVIPSTCALT------LDLWRQ-GLTVEQI 665
Query: 234 ANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDK 293
A RS ++ +T+ +L E V G DI RL VG + I+ + K+G
Sbjct: 666 AER--RS--LRIETIEGHLAELVESGEDIAIERL---VG--PDRRRTIEAVLLKLGTA-V 715
Query: 294 LKPIKNELPDDITYAHIK 311
LKP+K +L D+ +Y I+
Sbjct: 716 LKPVKEQLGDEYSYGEIR 733
>gi|15603292|ref|NP_246366.1| RecQ protein [Pasteurella multocida subsp. multocida str. Pm70]
gi|18202817|sp|Q9CL21.1|RECQ_PASMU RecName: Full=ATP-dependent DNA helicase RecQ
gi|12721804|gb|AAK03511.1| RecQ [Pasteurella multocida subsp. multocida str. Pm70]
Length = 632
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 19/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D Q ++L ++G+GKD S W+++ QLI G++ + T+ +++ K
Sbjct: 457 NQKIKDNQHEQLSVYGIGKDKSKEHWQSVIRQLIHLGFIKQVFDHFNATLQLTENAK--- 513
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GE + ISS L S + ++ D L+ L
Sbjct: 514 ---------PIL---RGEQPLSLAMPRISS----LTSVVAPQRYAIAQYDKDLFARLRFL 557
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A Y + D T++++A +P+TKA + I+GV
Sbjct: 558 RKQIADKENIPAYIVFNDATLQEMAQYQPTTKAEMLAINGV 598
>gi|402301032|ref|ZP_10820450.1| ATP-dependent DNA helicase RecS [Bacillus alcalophilus ATCC 27647]
gi|401723839|gb|EJS97263.1| ATP-dependent DNA helicase RecS [Bacillus alcalophilus ATCC 27647]
Length = 703
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 135/284 (47%), Gaps = 35/284 (12%)
Query: 32 QLISYGYLTE-TIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTFNGEMVDAEEHETISS 90
QL +YG + E TIK++ + +QY+ + P L LT N + + E +
Sbjct: 452 QLPTYGLMKEWTIKELGSFIDYLS-AEQYIKPTNSGY-PTLQLT-NKAINVLKGEEKVYQ 508
Query: 91 NVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPS 150
+ +KS +++E ++ L E+RK+LA G APY + D+T+K+++ A P
Sbjct: 509 RIVKIKSEVKIDDE--------VFEALREKRKELADEQGVAPYLVFSDKTLKQMSQAIPI 560
Query: 151 TKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRT 210
T+ ++ I GV + +G + + Q+ +S GE + +R+ + +
Sbjct: 561 TEEEMSQISGVGTMKLEQYGQAFIDVLLQY-QERKVSTTNHFGESSNQSRRSWSYLQS-- 617
Query: 211 KLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDE 270
EA+ G +I++IA + + E+T+ +L++ + G +I+ E
Sbjct: 618 ------VEAFS----GGKTIKEIA----KEQSLTERTIQSHLIKGLHNG-EIDSLEKYVE 662
Query: 271 VGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKACL 314
++ I++ ++ VG +KLKPIK +L + I+Y I+ +
Sbjct: 663 PWKVEQ----IKQVVNVVGT-EKLKPIKEQLDETISYEEIRFVI 701
>gi|421264177|ref|ZP_15715182.1| RecQ [Pasteurella multocida subsp. multocida str. P52VAC]
gi|401688642|gb|EJS84205.1| RecQ [Pasteurella multocida subsp. multocida str. P52VAC]
Length = 388
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 19/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D Q ++L ++G+GKD S W+++ QLI G++ + T+ +++ K
Sbjct: 213 NQKIKDNQHEQLSVYGIGKDKSKEHWQSVIRQLIHLGFIKQVFDHFNATLQLTENAK--- 269
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GE + ISS L S + ++ D L+ L
Sbjct: 270 ---------PIL---RGEQPLSLAMPRISS----LTSVVAPQRYAMAQYDKDLFARLRFL 313
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A Y + D T++++A +P+TKA + I+GV
Sbjct: 314 RKQIADKENIPAYIVFNDATLQEMAQYQPTTKAEMLAINGV 354
>gi|425064148|ref|ZP_18467273.1| ATP-dependent DNA helicase RecQ [Pasteurella multocida subsp.
gallicida X73]
gi|404381741|gb|EJZ78209.1| ATP-dependent DNA helicase RecQ [Pasteurella multocida subsp.
gallicida X73]
Length = 632
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 19/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D Q ++L ++G+GKD S W+++ QLI G++ + T+ +++ K
Sbjct: 457 NQKIKDNQHEQLSVYGIGKDKSKEHWQSVIRQLIHLGFIKQVFDHFNATLQLTENAK--- 513
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GE + ISS L S + ++ D L+ L
Sbjct: 514 ---------PIL---RGEQPLSLAMPRISS----LTSVVAPQRYAMAQYDKDLFARLRFL 557
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A Y + D T++++A +P+TKA + I+GV
Sbjct: 558 RKQIADKENIPAYIVFNDATLQEMAQYQPTTKAEMLAINGV 598
>gi|254429530|ref|ZP_05043237.1| ATP-dependent DNA helicase RecQ [Alcanivorax sp. DG881]
gi|196195699|gb|EDX90658.1| ATP-dependent DNA helicase RecQ [Alcanivorax sp. DG881]
Length = 713
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 20/187 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S KV A D + +G + ++N WK++ QL++ G LT + Y + ++ + YL
Sbjct: 438 SDKVASAGHDHVSTWNIGNEFNANQWKSIYRQLVARGLLTVDMNG-YGALQLTDACRPYL 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+P H E+ A++ G KS + + +EAD L+ L
Sbjct: 497 RGEQPLH-------LRKEIAKAKK-------TGTRKSQSNV-----AEADRTLWEALRAC 537
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+L+ G PY + D T+ + RP + L+ + GV + +GD L +
Sbjct: 538 RKRLSEEEGVPPYVVFHDATLMDMLAIRPRNRMELSAVSGVGDRKLERYGDDFLAVLNKA 597
Query: 181 SQKLNLS 187
+ N S
Sbjct: 598 ANGNNTS 604
>gi|419839751|ref|ZP_14363154.1| ATP-dependent DNA helicase RecQ [Haemophilus haemolyticus HK386]
gi|386909096|gb|EIJ73776.1| ATP-dependent DNA helicase RecQ [Haemophilus haemolyticus HK386]
Length = 619
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q DKL ++G+GKD S W+++ QLI G++ + I ++ T+ +++ K L
Sbjct: 447 NQKIIERQHDKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVIGELNPTLQLTESAKAIL 506
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P L + A IS K + + + + D L+ L
Sbjct: 507 KGEEP-------LELAMPRISA-----IS------KIAHNPQRQSVANYDKDLFARLRFL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P++ + I+GV
Sbjct: 549 RKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGV 589
>gi|209527293|ref|ZP_03275803.1| ATP-dependent DNA helicase RecQ [Arthrospira maxima CS-328]
gi|209492281|gb|EDZ92626.1| ATP-dependent DNA helicase RecQ [Arthrospira maxima CS-328]
Length = 739
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 136/326 (41%), Gaps = 39/326 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+++V+ DKL + +G+D + + WK LA L+ G L +T D Y + ++ + +
Sbjct: 450 NQRVLSRGHDKLSTYNIGRDRTVDEWKMLARSLLHQGLLDQT-NDGYSILKLNNLSWEVM 508
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R + D + + S D+K M L H L +
Sbjct: 509 KRQRE--------VKIAVVRDRQLPQQTWSMAADVK--------------MLLEH-LRQV 545
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA APY + D T+ +A RP TK L + GV + V +G L I
Sbjct: 546 RKQLADQNDIAPYKIFSDSTLGLMARERPQTKQDLLRLSGVTAYKVQHYGQQFLNAIHQY 605
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
+ + L A + ++ ++P + W+++ + GL++++IA G
Sbjct: 606 CLEQGIPLKPTKPPLPAVSSS---SISKWYHVSPTVLQTWELFKQ-GLNVEEIAYQRG-- 659
Query: 241 APIKEQTVVDYLLEAVSEGF-DINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKN 299
+K T+ +L + ++ + DI+ L ++ E I EAI+ +G + L I
Sbjct: 660 --LKSTTIYGHLADLIANNYGDIDINTL-----VSPERQQVILEAIAILG-DEHLTTIYE 711
Query: 300 ELPDDITYAHIKACLVMENCGISPEV 325
L +Y I+ + SP++
Sbjct: 712 HLGKAYSYGEIQLVRALWRSQNSPDI 737
>gi|383311275|ref|YP_005364085.1| ATP-dependent DNA helicase recQ [Pasteurella multocida subsp.
multocida str. HN06]
gi|386835294|ref|YP_006240611.1| ATP-dependent DNA helicase RecQ [Pasteurella multocida subsp.
multocida str. 3480]
gi|380872547|gb|AFF24914.1| ATP-dependent DNA helicase recQ [Pasteurella multocida subsp.
multocida str. HN06]
gi|385201997|gb|AFI46852.1| ATP-dependent DNA helicase RecQ [Pasteurella multocida subsp.
multocida str. 3480]
Length = 632
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 19/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D Q ++L ++G+GKD S W+++ QLI G++ + T+ +++ K
Sbjct: 457 NQKIKDNQHEQLSVYGIGKDKSKEHWQSVIRQLIHLGFIKQVFDHFNATLQLTENAK--- 513
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GE + ISS L S + ++ D L+ L
Sbjct: 514 ---------PIL---RGEQPLSLAMPRISS----LTSVVAPQRYAMAQYDKDLFARLRFL 557
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A Y + D T++++A +P+TKA + I+GV
Sbjct: 558 RKQIADKENIPAYIVFNDATLQEMAQYQPTTKAEMLAINGV 598
>gi|378775278|ref|YP_005177521.1| ATP-dependent DNA helicase RecQ [Pasteurella multocida 36950]
gi|356597826|gb|AET16552.1| ATP-dependent DNA helicase RecQ [Pasteurella multocida 36950]
Length = 632
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 19/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D Q ++L ++G+GKD S W+++ QLI G++ + T+ +++ K
Sbjct: 457 NQKIKDNQHEQLSVYGIGKDKSKEHWQSVIRQLIHLGFIKQVFDHFNATLQLTENAK--- 513
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GE + ISS L S + ++ D L+ L
Sbjct: 514 ---------PIL---RGEQPLSLAMPRISS----LTSVVAPQRYAMAQYDKDLFARLRFL 557
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A Y + D T++++A +P+TKA + I+GV
Sbjct: 558 RKQIADKENIPAYIVFNDATLQEMAQYQPTTKAEMLAINGV 598
>gi|170760120|ref|YP_001786388.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum A3 str. Loch
Maree]
gi|169407109|gb|ACA55520.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum A3 str. Loch
Maree]
Length = 709
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 99/206 (48%), Gaps = 19/206 (9%)
Query: 108 EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVI 167
+AD +L+ +L + RK +++ P+ + D T+K+++ P+ + L I G+ +
Sbjct: 515 KADNELFEILKQLRKAISQEESVPPFMIFPDATLKELSEYMPTKEEDLLKIKGIGERKAE 574
Query: 168 THGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDG 227
+G+ ++ I + + ++ + K ++ K Y +K +G
Sbjct: 575 VYGERFIEAITEYMNEKGIDINNMDNYENTKSNK-----ESKIKTHVLSYNLYK----EG 625
Query: 228 LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISK 287
+I++I+ +K T+ ++L + +SEG +++ ++ + I + I K
Sbjct: 626 KTIKEIS----EERNLKAITIQEHLFKCLSEGMEVDLDNFINK-----DYERLILDTIKK 676
Query: 288 VGCKDKLKPIKNELPDDITYAHIKAC 313
+G KLKP+K+ELP+++ Y IK+
Sbjct: 677 IGGT-KLKPVKDELPEEVDYMCIKSV 701
>gi|383810866|ref|ZP_09966350.1| ATP-dependent DNA helicase RecQ [Prevotella sp. oral taxon 306 str.
F0472]
gi|383356505|gb|EID34005.1| ATP-dependent DNA helicase RecQ [Prevotella sp. oral taxon 306 str.
F0472]
Length = 727
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 20/164 (12%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
G G+D W + Q + GYL + +++ Y + ++ GK+++ S ++
Sbjct: 459 GAGEDEDPKIWNPVVRQALLAGYLKKDVEN-YGLLKLTAAGKRFMKSP-----TSFMIVM 512
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
+ E D E+ +T L +A L+ E FS ML RKK+AR PY +
Sbjct: 513 DAEFKDDEDDDT------PLTGTAVLDPELFS--------MLKNLRKKIARKLEIPPYVI 558
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
D +++++A+ P + L NI GV +G + IR
Sbjct: 559 FQDVSLEQMAMMYPINEEELQNIQGVGAGKAKRYGKEFCELIRQ 602
>gi|157692621|ref|YP_001487083.1| ATP-dependent helicase [Bacillus pumilus SAFR-032]
gi|157681379|gb|ABV62523.1| possible ATP-dependent helicase [Bacillus pumilus SAFR-032]
Length = 593
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 31/183 (16%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV++ FD+L + L K HS+ LI+ YL + + Y T+ V+ +GK+ L
Sbjct: 439 NKKVLELGFDRLPTYALMKQHSAQQISDFIEFLITEEYLHMS-EGAYPTLKVTHKGKKVL 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
++ +K+ A EN+ L+ L
Sbjct: 498 VGQEAVYKKQ-----------------------AIKAEAIQENDA-------LFERLRSL 527
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R KLAR G P+ + DQT+K+++ P T L I G+ +GD L+ IR
Sbjct: 528 RMKLAREQGVPPFVVFSDQTLKEMSAVEPQTDEELLQIKGIGAQKREKYGDVFLEEIRLF 587
Query: 181 SQK 183
+K
Sbjct: 588 IEK 590
>gi|91204323|emb|CAJ71976.1| strongly similar to ATP-dependent DNA helicase [Candidatus Kuenenia
stuttgartiensis]
Length = 772
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 136/311 (43%), Gaps = 43/311 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K++ L G+GK++S + W T + +LI GYL + D Y + ++ Q ++ L
Sbjct: 491 NQKILQNSHTALTTFGIGKEYSKSQWLTFSRELIQLGYLAQE-GDRYPVLKLTSQSREVL 549
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ +LL V EE +++ + D D+ L+ L
Sbjct: 550 QGKKK-----VLL------VKPEETASLAVSGED------------KNYDLALFERLRTL 586
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK LA PY + D ++K++++ P T + L I G+ + + +GD L+ I
Sbjct: 587 RKTLADQESMPPYVIFHDTSLKEMSMRYPQTASDLKKISGMGELKLRKYGDLFLKEI--- 643
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
N ++ A +R+ + + K +P Y +++ ++ LS+++IA G
Sbjct: 644 ---CNYCRQHQITPKEANSRR-QATLRKQMK-SPTVYTTLELY-KNNLSLREIAGKRG-- 695
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
+ T+ +L + G D++ + I+ + ++G + L P+K +
Sbjct: 696 --LATSTIATHLETLIIAGEDVSIDKFVAPAKQ-----QRIRTVLGELGM-EALTPVKEK 747
Query: 301 LPDDITYAHIK 311
L ++ +Y IK
Sbjct: 748 LGEEYSYDEIK 758
>gi|374587401|ref|ZP_09660493.1| ATP-dependent DNA helicase RecQ [Leptonema illini DSM 21528]
gi|373876262|gb|EHQ08256.1| ATP-dependent DNA helicase RecQ [Leptonema illini DSM 21528]
Length = 617
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 22/178 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV+ + L +G+G + ++ W +A QL+ +GYL + + +RT+ +S + L
Sbjct: 456 NEKVLRNRHQDLSTYGIGTNLTAIQWNHVARQLVRHGYLVQ--EGEFRTLRLSDLAIRSL 513
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ P+ L E + ++ S + G E L+ +L +
Sbjct: 514 -----RERAPITL------------EAMPQGEAPVRRSPSTLASGMDET---LFGLLRQR 553
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK+LA G PY + D+T+ ++A A P + L +I GV Q + +G+ L IR
Sbjct: 554 RKELADAAGIPPYIVFSDRTLVEMASALPQSDEELLSISGVGQVKLERYGEEFLGVIR 611
>gi|325579297|ref|ZP_08149253.1| ATP-dependent helicase RecQ [Haemophilus parainfluenzae ATCC 33392]
gi|325159532|gb|EGC71666.1| ATP-dependent helicase RecQ [Haemophilus parainfluenzae ATCC 33392]
Length = 621
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+V+ Q DKL ++G+GKD S W+++ QLI G++ + I + + + ++ Q
Sbjct: 449 NQKIVERQHDKLSVYGIGKDKSKEHWQSVIRQLIHLGFIQQVIGE-FNSATL-----QLT 502
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
SARP GE+ ISS + +S + D L+ L
Sbjct: 503 ESARP--------VLKGEVPLELAMPRISSINKIVHTS---HKNTVANYDKDLFARLRFL 551
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK+LA PY + D T++++A P++ + I+GV + G + IR
Sbjct: 552 RKQLADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGVGAIKLERFGQPFMALIR 609
>gi|229845776|ref|ZP_04465888.1| frataxin-like protein [Haemophilus influenzae 7P49H1]
gi|229810780|gb|EEP46497.1| frataxin-like protein [Haemophilus influenzae 7P49H1]
Length = 619
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q KL ++G+GKD S W+++ QLI G++ + I ++ T+ +++ K L
Sbjct: 447 NQKIIERQHHKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVISELNPTLQLTESAKVIL 506
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P L + A IS K + + +G + D L+ L
Sbjct: 507 KGEEP-------LELAMPRISA-----IS------KIAHNPQRQGVANYDKDLFARLRFL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P++ + I+GV
Sbjct: 549 RKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGV 589
>gi|383192105|ref|YP_005202233.1| ATP-dependent DNA helicase RecQ [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
gi|371590363|gb|AEX54093.1| ATP-dependent DNA helicase RecQ [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 610
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 25/181 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+GK+HS+ W ++ QLI G +T+ I Q
Sbjct: 444 NQRIREYGHDKLTVYGIGKEHSNEHWTSVVRQLIHLGLITQNI--------AMHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEM---VDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
SARP GE+ + +T+ +KSSA+ + G D +L+ L
Sbjct: 496 ESARP--------VLRGEIPLQLAVPRIQTLK-----IKSSASQKTYG-GNYDRKLFAKL 541
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ RK LA PY + D T+ ++A P + + L +I GV Q + G + I
Sbjct: 542 RKLRKSLADDNNVPPYVVFNDTTLLEMAEHLPVSASDLLDITGVGQRKLEKFGRPFMAMI 601
Query: 178 R 178
R
Sbjct: 602 R 602
>gi|170078505|ref|YP_001735143.1| ATP-dependent DNA helicase [Synechococcus sp. PCC 7002]
gi|169886174|gb|ACA99887.1| ATP-dependent DNA helicase [Synechococcus sp. PCC 7002]
Length = 712
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 28/182 (15%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+K++ +L +G+G DH+ WK L L+ G +TET D YR + ++ + + L
Sbjct: 444 EKIIQNGHHQLSTYGIGLDHTKEAWKNLGRSLLYQGLMTET-SDGYRVLKLNARSWEIL- 501
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQ---LYHMLL 118
+ +T+ V +++ E G SE+ + L+ L
Sbjct: 502 ---------------------RQQKTVKIAVERRQTAQ--EILGISESRLDAEILFGQLR 538
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
+ RK+LA APY + D T++++A RP T+A I GV +G+ L I+
Sbjct: 539 QLRKQLADANWVAPYMIFSDATLRQMATRRPRTQADFCLISGVTSAKYQRYGEPFLAAIQ 598
Query: 179 HL 180
Sbjct: 599 EF 600
>gi|58040835|ref|YP_192799.1| ATP-dependent DNA helicase RecQ [Gluconobacter oxydans 621H]
gi|58003249|gb|AAW62143.1| ATP-dependent DNA helicase RecQ [Gluconobacter oxydans 621H]
Length = 651
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 16/174 (9%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
+ L + G+GK+HS WW+ + QLI+ G + + Y ++++ + ARP
Sbjct: 489 YQHLSVFGIGKEHSEQWWRAVIRQLIARGAIR--MHGEYGSLALQSE------IARP--- 537
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
GE A E ++ S EN+ S + + L + R AR
Sbjct: 538 -----ILRGEERVALRLEAKAALTASAGSDGNTENDRLSADEKPYFDALRQWRLSEAREQ 592
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQ 182
PY + D ++ IA +P+++A L +I GV + +G +L +R + +
Sbjct: 593 EIPPYVIFHDSVLRDIAREQPASRAELGSIKGVGASKLDRYGAAVLTVLREIRE 646
>gi|410663371|ref|YP_006915742.1| ATP-dependent DNA helicase RecQ [Simiduia agarivorans SA1 = DSM
21679]
gi|409025728|gb|AFU98012.1| ATP-dependent DNA helicase RecQ [Simiduia agarivorans SA1 = DSM
21679]
Length = 705
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 122/309 (39%), Gaps = 60/309 (19%)
Query: 8 QFD--KLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARP 65
QFD +L +G+G + +N W+++ QL++ GYL +V G G +
Sbjct: 443 QFDHQQLSTYGIGAELDANQWRSVFRQLVARGYL-----------AVDTAG---FGGLKL 488
Query: 66 DHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLA 125
D + LL EE + +V D+K + + + AD +L++ L RK+LA
Sbjct: 489 DEKCRALLK-------GEETIELRRDVKDIKQRKSSRTQQLAAADERLWNALRATRKRLA 541
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
G PY + D T+ ++ P+++ + I GV + + G L T+ +
Sbjct: 542 EEHGVPPYVVFHDATLMEMVRYHPTSEQAMLAISGVGESKLAKFGQAFLDTLCEFDAPDD 601
Query: 186 LSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKE 245
S D G T R +TPA+ A + GL+ E
Sbjct: 602 DSSDTLDGTLTLL----------RLHMTPAQIAAQR-----GLT---------------E 631
Query: 246 QTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD---KLKPIKNELP 302
T+ +++ E + G L + + + D + +Q+ I D + KP+ L
Sbjct: 632 NTIYNHMAELIQSG----QISLREALDINDADLARMQDEILAYDGGDEGFRFKPVYEALD 687
Query: 303 DDITYAHIK 311
Y +K
Sbjct: 688 GAFDYGTLK 696
>gi|423066192|ref|ZP_17054982.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis C1]
gi|406712234|gb|EKD07423.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis C1]
Length = 739
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 136/326 (41%), Gaps = 39/326 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+++V+ DKL + +G+D + + WK LA L+ G L +T D Y + ++ + +
Sbjct: 450 NQRVLSRGHDKLSTYNIGRDRTVDEWKMLARSLLHQGLLDQT-NDGYSILKLNNLSWEVM 508
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R + D + + S D+K M L H L +
Sbjct: 509 KRQRE--------VKIAVVRDRQLPQQTWSMAADVK--------------MLLEH-LRQV 545
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA APY + D T+ +A RP TK L + GV + V +G L I
Sbjct: 546 RKQLADQNDIAPYKIFSDSTLGLMARERPQTKQDLLRLSGVTAYKVQHYGQQFLNAIHQY 605
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
+ + L A + ++ ++P + W+++ + GL++++IA G
Sbjct: 606 CLEQGIPLKPTKPPLPAVSSS---SISKWYHVSPTVLQTWELFKQ-GLNVEEIAYQRG-- 659
Query: 241 APIKEQTVVDYLLEAVSEGF-DINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKN 299
+K T+ +L + ++ + DI+ L ++ E I EAI+ +G + L I
Sbjct: 660 --LKSTTIYGHLADLIANNYGDIDINTL-----VSPERQQVILEAIAILG-DEHLTTIYE 711
Query: 300 ELPDDITYAHIKACLVMENCGISPEV 325
L +Y I+ + SP++
Sbjct: 712 HLGKAYSYGEIQLVRALWRSQNSPDI 737
>gi|15806307|ref|NP_295013.1| DNA helicase RecQ [Deinococcus radiodurans R1]
gi|6459036|gb|AAF10859.1|AE001976_2 DNA helicase RecQ [Deinococcus radiodurans R1]
Length = 824
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 27/183 (14%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTE----TIKDVYRTVSVSQQG 56
+ KV+ +L G+GK+H W+++ QL+S GYL+ ++ ++ + ++G
Sbjct: 445 TDKVLAQGHHQLPTFGVGKEHDEKLWRSVLRQLVSLGYLSADDHFGLRATGKSRGILKEG 504
Query: 57 KQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKS-SATLENEGFSEADMQLYH 115
++ LLL +T+ G K A+ D L+
Sbjct: 505 QK------------LLL----------REDTLLPGAGKSKRDRASASRAALDSHDAPLFE 542
Query: 116 MLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQ 175
L R + A+ PY + D T+K IA RP + A L + GV + +GD +LQ
Sbjct: 543 ALRAWRLQKAKELSLPPYTIFHDATLKTIAELRPGSHATLGTVSGVGGRKLAAYGDEVLQ 602
Query: 176 TIR 178
+R
Sbjct: 603 VVR 605
>gi|319775328|ref|YP_004137816.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047]
gi|319897768|ref|YP_004135965.1| ATP-dependent DNA helicase [Haemophilus influenzae F3031]
gi|329122676|ref|ZP_08251254.1| ATP-dependent helicase RecQ [Haemophilus aegyptius ATCC 11116]
gi|317433274|emb|CBY81649.1| ATP-dependent DNA helicase [Haemophilus influenzae F3031]
gi|317449919|emb|CBY86131.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047]
gi|327472550|gb|EGF17980.1| ATP-dependent helicase RecQ [Haemophilus aegyptius ATCC 11116]
Length = 619
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q KL ++G+GKD S W+++ QLI G++ + I ++ T+ +++ K L
Sbjct: 447 NQKIIERQHHKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVISELNPTLQLTESAKVIL 506
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P L + A IS K + + +G + D L+ L
Sbjct: 507 KGEEP-------LELAMPRISA-----IS------KIAHNPQRQGVANYDKDLFARLRFL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P++ + I+GV
Sbjct: 549 RKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGV 589
>gi|376003245|ref|ZP_09781059.1| ATP-dependent DNA helicase [Arthrospira sp. PCC 8005]
gi|375328405|emb|CCE16812.1| ATP-dependent DNA helicase [Arthrospira sp. PCC 8005]
Length = 739
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 136/326 (41%), Gaps = 39/326 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+++V+ DKL + +G+D + + WK LA L+ G L +T D Y + ++ + +
Sbjct: 450 NQRVLSRGHDKLSTYNIGRDRTVDEWKMLARSLLHQGLLDQT-NDGYSILKLNNLSWEVM 508
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R + D + + S D+K M L H L +
Sbjct: 509 KRQRE--------VKIAVVRDRQLPQQTWSMAADVK--------------MLLEH-LRQV 545
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA APY + D T+ +A RP TK L + GV + V +G L I
Sbjct: 546 RKQLADQNDIAPYKIFSDSTLGLMARERPQTKQDLLRLSGVTAYKVQHYGQQFLNAIHQY 605
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
+ + L A + ++ ++P + W+++ + GL++++IA G
Sbjct: 606 CLEQGIPLKPTKPPLPAVSSS---SISKWYHVSPTVLQTWELFKQ-GLNVEEIAYQRG-- 659
Query: 241 APIKEQTVVDYLLEAVSEGF-DINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKN 299
+K T+ +L + ++ + DI+ L ++ E I EAI+ +G + L I
Sbjct: 660 --LKSTTIYGHLADLIANNYGDIDINTL-----VSPERQQVILEAIAILG-DEHLTTIYE 711
Query: 300 ELPDDITYAHIKACLVMENCGISPEV 325
L +Y I+ + SP++
Sbjct: 712 HLGKAYSYGEIQLVRALWRSQNSPDI 737
>gi|436838278|ref|YP_007323494.1| ATP-dependent DNA helicase RecQ [Fibrella aestuarina BUZ 2]
gi|384069691|emb|CCH02901.1| ATP-dependent DNA helicase RecQ [Fibrella aestuarina BUZ 2]
Length = 735
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 130/320 (40%), Gaps = 50/320 (15%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
+V +DK+ +G G D W+ +QLI+ G I+ Y ++G
Sbjct: 456 IVSQGYDKIKTYGAGADLKFEEWRNYLHQLINIG----VIEIAYENHYALRKG------- 504
Query: 64 RPDHQPPLL---LTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
LL + F G+ + + + V ++ + EG + L+ L
Sbjct: 505 -------LLADDVLFKGKTISLVRPDDVPKPV--VEKATRTRTEGTRD---DLFERLRAL 552
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK++A PY + D T++ +A RP+T N+ GV + + G+ L I
Sbjct: 553 RKRIADAQNVPPYVVFTDSTLEDMARQRPTTPDAFRNVSGVGERKLEMFGEAFLDEI--- 609
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKM---WHEDGLSIQKIANYP 237
VG ++ V + ++ K +M ++ GL+I +IA
Sbjct: 610 --------TAYVGVSRGTSQVRSEVPSRSREVAKPKGTTQQMTFELYQQGLTIDQIA--- 658
Query: 238 GRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD-KLKP 296
++ + ++ ++L++ G+D++ RL +T AI+ AI+ VG +D + KP
Sbjct: 659 -KARELGPSSIANHLIQLNRGGYDVDLERL-----ITPAERRAIEAAIATVGIEDNRTKP 712
Query: 297 IKNELPDDITYAHIKACLVM 316
+ + L Y I + +
Sbjct: 713 VFDHLEGKYDYGKINLTIAL 732
>gi|374579466|ref|ZP_09652560.1| ATP-dependent DNA helicase RecQ [Desulfosporosinus youngiae DSM
17734]
gi|374415548|gb|EHQ87983.1| ATP-dependent DNA helicase RecQ [Desulfosporosinus youngiae DSM
17734]
Length = 730
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 20/214 (9%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
++ L+ L R+++A PY + D T++++A P + I GV + + +
Sbjct: 518 EVSLFDQLRALRREIALRENLPPYMIFADSTLREMAQVCPINHRAMIRISGVGERKLEKY 577
Query: 170 GDHLLQTIR--------HLSQKLNLSLDGKVGE-HTAFTRKLHVVVNTRTKLTPAKYEAW 220
GD L+ IR +L K N L+ E + R+ + ++ + + +
Sbjct: 578 GDEFLEAIRKFAFPGSENLPVKSNQPLETSAHELESKACRETISSEISSSEKVSSHLQTF 637
Query: 221 KMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSA 280
M+ E G S++ IA + PI TV ++ + +G + W + E +
Sbjct: 638 MMYRE-GYSLEDIAKM-RKVTPI---TVQNHFVRCSMDGHAVPWDDF-----IPSEQEAH 687
Query: 281 IQEAISKVGCKDKLKPIKNELPDDITYAHIKACL 314
I EAI +VG +KL+PIK+ LPD++ + I+A L
Sbjct: 688 ILEAIQQVG-GEKLRPIKDLLPDEVEWFTIRAVL 720
>gi|322834919|ref|YP_004214946.1| ATP-dependent DNA helicase RecQ [Rahnella sp. Y9602]
gi|384260143|ref|YP_005404077.1| ATP-dependent DNA helicase RecQ [Rahnella aquatilis HX2]
gi|321170120|gb|ADW75819.1| ATP-dependent DNA helicase RecQ [Rahnella sp. Y9602]
gi|380756119|gb|AFE60510.1| ATP-dependent DNA helicase RecQ [Rahnella aquatilis HX2]
Length = 610
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 25/181 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+GK+HS+ W ++ QLI G +T+ I Q
Sbjct: 444 NQRIREYGHDKLTVYGIGKEHSNEHWTSVVRQLIHLGLITQNI--------AMHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEM---VDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
SARP GE+ + +T+ +KSSA+ + G D +L+ L
Sbjct: 496 ESARP--------VLRGEIPLQLAVPRIQTLK-----IKSSASQKTYG-GNYDRKLFAKL 541
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ RK LA PY + D T+ ++A P + + L +I GV Q + G + I
Sbjct: 542 RKLRKSLADDNNVPPYVVFNDTTLLEMAEHLPVSASDLLDITGVGQRKLEKFGRPFMAMI 601
Query: 178 R 178
R
Sbjct: 602 R 602
>gi|260591259|ref|ZP_05856717.1| ATP-dependent DNA helicase RecQ [Prevotella veroralis F0319]
gi|260537124|gb|EEX19741.1| ATP-dependent DNA helicase RecQ [Prevotella veroralis F0319]
Length = 727
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 20/164 (12%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
G G+D W + Q + GYL + +++ Y + ++ GK+++ S ++
Sbjct: 459 GAGEDEDPKIWNPVVRQALLAGYLKKDVEN-YGILKLTAAGKRFMKSP-----TSFMIVM 512
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
+ E D E+ +T + +A L+ E FS ML RKK+AR PY +
Sbjct: 513 DAEFKDEEDDDT------PMAGTAVLDPELFS--------MLKNLRKKIARKLEIPPYVI 558
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
D +++++A+ P + L NI GV +G + IR
Sbjct: 559 FQDVSLEQMAMMYPINEEELQNIQGVGAGKAKRYGKEFCELIRQ 602
>gi|16272669|ref|NP_438887.1| ATP-dependent DNA helicase [Haemophilus influenzae Rd KW20]
gi|260579821|ref|ZP_05847651.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae RdAW]
gi|2500112|sp|P71359.1|RECQ_HAEIN RecName: Full=ATP-dependent DNA helicase RecQ
gi|1573732|gb|AAC22387.1| ATP-dependent DNA helicase (recQ) [Haemophilus influenzae Rd KW20]
gi|260093105|gb|EEW77038.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae RdAW]
Length = 619
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q KL ++G+GKD S W+++ QLI G++ + I ++ T+ +++ K L
Sbjct: 447 NQKIIERQHHKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVISELNPTLQLTESAKVIL 506
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P L + A IS K + + +G + D L+ L
Sbjct: 507 KGEEP-------LELAMPRISA-----IS------KIAHNPQRQGVANYDKDLFARLRFL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P++ + I+GV
Sbjct: 549 RKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGV 589
>gi|148827918|ref|YP_001292671.1| frataxin-like protein [Haemophilus influenzae PittGG]
gi|148719160|gb|ABR00288.1| frataxin-like protein [Haemophilus influenzae PittGG]
Length = 619
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q KL ++G+GKD S W+++ QLI G++ + I ++ T+ +++ K L
Sbjct: 447 NQKIIERQHHKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVISELNPTLQLTESAKVIL 506
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P L + A IS K + + +G + D L+ L
Sbjct: 507 KGEEP-------LELAMPRISA-----IS------KIAHNPQRQGVANYDKDLFARLRFL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P++ + I+GV
Sbjct: 549 RKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGV 589
>gi|253690325|ref|YP_003019515.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756903|gb|ACT14979.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 608
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GKD S W ++ QLI G L + I ++ V +++
Sbjct: 444 NQRIRDFGHDKLPVYGIGKDKSQEHWVSVLRQLIHLGLLNQNIT-MHSAVQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
SARP GE+ + V +LK A ++ G D +L+ L +
Sbjct: 497 -SARP--------VLRGEV----PLQLAVPRVINLKPRANQKSYG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P T L NI+GV + G + IR
Sbjct: 543 RKSIADEDNIPPYVVFSDATLLEMAELMPITAGELLNINGVGHRKLERFGAPFMNMIR 600
>gi|50123092|ref|YP_052259.1| ATP-dependent DNA helicase RecQ [Pectobacterium atrosepticum
SCRI1043]
gi|49613618|emb|CAG77069.1| ATP-dependent DNA helicase [Pectobacterium atrosepticum SCRI1043]
Length = 608
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GKD S W ++ QLI G L + I ++ V +++
Sbjct: 444 NQRIRDFGHDKLPVYGIGKDKSQEHWVSVLRQLIHLGLLNQNIT-MHSAVQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
ARP GEM + V +LK A ++ G D +L+ L +
Sbjct: 497 -PARP--------VLRGEM----PLQLAVPRVINLKPRANQKSYG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P T L NI+GV + G + IR
Sbjct: 543 RKSIADEDNIPPYVVFSDATLLEMAELMPITAGELLNINGVGHRKLERFGAPFMNMIR 600
>gi|291514588|emb|CBK63798.1| ATP-dependent DNA helicase RecQ [Alistipes shahii WAL 8301]
Length = 730
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 17/163 (10%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
G G +H + +W + Q + G + + I++ Y +SV+++G+ Y+ A P P+ +T
Sbjct: 458 GAGAEHDARFWGAVLRQALILGLIDKNIEN-YGLISVNKKGEGYI--ALP---FPVTVTL 511
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
+ D +E E S +V + AD +L+ ML + RKK+A+ G P+ +
Sbjct: 512 DH---DYDEEEKESESVAPMGKGGA--------ADEELFSMLKDLRKKVAKQHGLPPFVI 560
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
D +++ +A+ P T + NI GV G+ ++ I+
Sbjct: 561 FQDPSLEDMAVQYPITFEEMQNITGVGVGKARKFGEEFIRLIK 603
>gi|145630467|ref|ZP_01786247.1| ATP-dependent DNA helicase [Haemophilus influenzae R3021]
gi|144983857|gb|EDJ91299.1| ATP-dependent DNA helicase [Haemophilus influenzae R3021]
Length = 619
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q KL ++G+GKD S W+++ QLI G++ + I ++ T+ +++ K L
Sbjct: 447 NQKIIERQHHKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVISELNPTLQLTESAKVIL 506
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P L + A IS K + + +G + D L+ L
Sbjct: 507 KGEEP-------LELAMPRISA-----IS------KIAHNPQRQGVANYDKDLFARLRFL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P++ + I+GV
Sbjct: 549 RKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGV 589
>gi|282898834|ref|ZP_06306821.1| ATP-dependent DNA helicase RecQ [Cylindrospermopsis raciborskii
CS-505]
gi|281196361|gb|EFA71271.1| ATP-dependent DNA helicase RecQ [Cylindrospermopsis raciborskii
CS-505]
Length = 719
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 132/319 (41%), Gaps = 65/319 (20%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVS------Q 54
++K+ + D+L +G+GKD +++ WK L L+ G L +T D Y + ++
Sbjct: 441 NQKIALHKHDQLSTYGIGKDKTADEWKMLCRSLLHQGLLEQT-NDGYSVLKLNPLSWEVM 499
Query: 55 QGKQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLY 114
+ ++ + A P +Q L+ N + +D E L NE
Sbjct: 500 RKQRQVSIAAPVYQKADLVAVNTKALDIE----------------ALMNE---------- 533
Query: 115 HMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLL 174
L + RK++A G APY + D T++ +A +P T L I GV + V +G+ L
Sbjct: 534 --LRQLRKQIADELGLAPYIIFQDSTLRLMAQIKPRTLEELGQISGVVSYKVNQYGERFL 591
Query: 175 QTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIA 234
I+ Q+ + K + ++ NT + H+ G +I++IA
Sbjct: 592 AVIQSYIQEQSWQPPKKSDD--------DLITNTESTTLEL--------HQQGFTIEQIA 635
Query: 235 NYPGRSAPIKEQTVVDYLLEAV--SEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD 292
+ +K T++ +L + + + D+N D I + I +G
Sbjct: 636 ----QKRNMKTATIIRHLSDLIEKKQPVDLNLLIPLDRQ-------KKIWQVIDVLG-DI 683
Query: 293 KLKPIKNELPDDITYAHIK 311
L PI++ L D TY I+
Sbjct: 684 NLTPIRDYLGDSYTYNEIR 702
>gi|261493662|ref|ZP_05990181.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261310662|gb|EEY11846.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 599
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 79/176 (44%), Gaps = 21/176 (11%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
K+ + Q D+L ++G+GK+ S ++W+ + QLI G + + I + Q S
Sbjct: 438 KIREHQHDQLSVYGIGKEQSQHYWQNVVRQLIHLGLIIQNIAN--------HSALQLTES 489
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
ARP + E+ ++ + ++A ++ + D L+ L RK
Sbjct: 490 ARP-------------FLRGEKQLQLALPRLGISATAFVQKQASHRYDKDLFARLRFLRK 536
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
++A + PY + D T++++A P++K + I+GV + G + I+
Sbjct: 537 QIADLENIPPYIVFNDATLQEMAEFLPTSKVEMLEINGVGERKFERFGQAFMSLIK 592
>gi|387817278|ref|YP_005677622.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum H04402 065]
gi|322805319|emb|CBZ02883.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum H04402 065]
Length = 709
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 98/206 (47%), Gaps = 19/206 (9%)
Query: 108 EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVI 167
+AD +L+ +L + RK +++ P+ + D T+K+++ P+ + L I G+ +
Sbjct: 515 KADNELFEILKQLRKTISQEESVPPFMIFPDATLKELSEYIPTKEEDLLKIKGIGERKAK 574
Query: 168 THGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDG 227
+G+ ++ I + + ++ + + K ++ K Y +K +G
Sbjct: 575 VYGERFIEAITEYMNEKGIDINNMDNYESTKSSK-----ESKIKTHVLSYNLYK----EG 625
Query: 228 LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISK 287
+I++IA +K T+ ++L + +SEG +++ + + I + I K
Sbjct: 626 KTIKEIA----EERNLKAITIQEHLFKCLSEGMEVDLDNF-----IKKDYEKLILDTIKK 676
Query: 288 VGCKDKLKPIKNELPDDITYAHIKAC 313
VG KLKP+K+ELP ++ Y IK+
Sbjct: 677 VGGT-KLKPVKDELPPEVDYMCIKSV 701
>gi|237794286|ref|YP_002861838.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum Ba4 str.
657]
gi|229263721|gb|ACQ54754.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum Ba4 str.
657]
Length = 709
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 105/228 (46%), Gaps = 27/228 (11%)
Query: 86 ETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIA 145
E +S V ++ ++NE L+ +L + RK++++ P+ + D T+K+++
Sbjct: 501 EIVSIKVSKIEKKVKVDNE--------LFEILKQLRKEISQEESVPPFMIFPDATLKELS 552
Query: 146 LARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVV 205
P+ + L I G+ + +G+ ++ I + + ++ + + K
Sbjct: 553 EYMPTKEEDLLKIKGIGERKAKVYGERFIEAITEYMNEKGIDINNMDNYESTKSNK---- 608
Query: 206 VNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWT 265
++ K Y +K +G +I++IA +K T+ ++L + +SEG +++
Sbjct: 609 -ESKIKTHVLSYNLYK----EGKTIKEIA----EERNLKAITIQEHLFKCLSEGMEVDLD 659
Query: 266 RLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKAC 313
+ + I + I KVG KLKP+K+ELP ++ Y IK+
Sbjct: 660 NF-----IKKDYEKLILDTIKKVGGT-KLKPVKDELPPEVDYMCIKSV 701
>gi|90021136|ref|YP_526963.1| ATP-dependent DNA helicase RecQ [Saccharophagus degradans 2-40]
gi|89950736|gb|ABD80751.1| ATP-dependent DNA helicase RecQ [Saccharophagus degradans 2-40]
Length = 603
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 22/179 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ DKL +G+GK + W+++ QL++ GYLT + Y ++ +++
Sbjct: 439 NEKIRKFGHDKLSTYGIGKGLAITEWRSIFRQLVARGYLT-VDPNGYGSLILTE------ 491
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENE-GFSEADMQLYHMLLE 119
S RP ++ EE + + LK+ + + EADM L++ L
Sbjct: 492 -SCRP-------------ILRGEEPIELRKDKATLKAPSVRKRLLDIDEADMGLWNALRR 537
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK+LA G PY + D T+K++ RP + L I G+ + +G L+ +R
Sbjct: 538 VRKELADEHGVPPYVIFHDATLKEMIEKRPMNDSELLCISGIGDRKLEQYGGEFLEVLR 596
>gi|145628391|ref|ZP_01784192.1| organic solvent tolerance protein [Haemophilus influenzae 22.1-21]
gi|145638475|ref|ZP_01794085.1| organic solvent tolerance protein [Haemophilus influenzae PittII]
gi|260583174|ref|ZP_05850954.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae NT127]
gi|386266538|ref|YP_005830030.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae R2846]
gi|144980166|gb|EDJ89825.1| organic solvent tolerance protein [Haemophilus influenzae 22.1-21]
gi|145272804|gb|EDK12711.1| organic solvent tolerance protein [Haemophilus influenzae PittII]
gi|260093792|gb|EEW77700.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae NT127]
gi|309751607|gb|ADO81591.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae R2866]
gi|309973774|gb|ADO96975.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae R2846]
Length = 619
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q KL ++G+GKD S W+++ QLI G++ + I ++ T+ +++ K L
Sbjct: 447 NQKIIERQHHKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVISELNPTLQLTESAKVIL 506
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P L + A IS K + + +G + D L+ L
Sbjct: 507 KGEEP-------LELAMPRISA-----IS------KIAHNPQRQGVANYDKDLFARLRFL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P++ + I+GV
Sbjct: 549 RKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGV 589
>gi|407452782|ref|YP_006724507.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-CH-1]
gi|403313766|gb|AFR36607.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-CH-1]
Length = 734
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 17/202 (8%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
G+GK+ S N+WK++ Q GY+ + I + Y + VS++G+ + D +P L+
Sbjct: 458 FFGIGKETSDNYWKSIIRQATVRGYIIKDI-ETYGVLRVSKKGQNIISGK--DKEPFLI- 513
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
AE+ E + L++ G D L++ L + RKK+A+ G PY
Sbjct: 514 --------AEDREYDLAQTKADSDQVQLQSGG--GLDKVLFNQLKDLRKKIAQKQGIPPY 563
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSL-DGKV 192
+ D +++ + + P T +A + GV + G + I+ + N+ D V
Sbjct: 564 TVFMDPSLEDMTVQYPITIEEIAKVYGVGEGKAKKFGKEFAEFIKKYVEDNNIERPDDMV 623
Query: 193 GEHTA--FTRKLHVVVNTRTKL 212
+ A + K+ ++ NT K+
Sbjct: 624 LKKVANKSSHKVFIIQNTDKKI 645
>gi|416037432|ref|ZP_11573920.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|347995786|gb|EGY36933.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
Length = 472
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 82/178 (46%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D ++L ++G+GK+H + +W+++ QL+ G + + I + T+ +++ K
Sbjct: 305 NQKIRDQHHEQLSVYGIGKEHGTEYWQSVLRQLVHLGLVRQIIGEYGNTLQLTENAK--- 361
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GE E E + + + ++A + + L+ L
Sbjct: 362 ---------PIL---RGE----EPLELATPRLSSIVTTAMMPKSAVGSYNKDLFARLRFL 405
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A +P + + I+GV + G L IR
Sbjct: 406 RKQIADKENIPPYIVFNDATLQEMAQYQPVSNIEMLQINGVGAIKLERFGQAFLALIR 463
>gi|417851454|ref|ZP_12497199.1| RecQ [Pasteurella multocida subsp. gallicida str. Anand1_poultry]
gi|338219526|gb|EGP05175.1| RecQ [Pasteurella multocida subsp. gallicida str. Anand1_poultry]
Length = 396
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 19/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D Q +L ++G+GKD S W+++ QLI G++ + T+ +++ K
Sbjct: 221 NQKIKDNQHKQLSVYGIGKDKSKEHWQSVIRQLIHLGFIKQVFDHFNATLQLTENAK--- 277
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GE + ISS L S + ++ D L+ L
Sbjct: 278 ---------PIL---RGEQPLSLAMPRISS----LASVVAPQRYAMAQYDKDLFSQLRFL 321
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A Y + D T++++A +P+TKA + I+GV
Sbjct: 322 RKQIADKENIPAYIVFNDATLQEMAQYQPTTKAEMLAINGV 362
>gi|227325786|ref|ZP_03829810.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 609
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GK+ S W ++ QLI G L + I ++ V +++
Sbjct: 444 NQRIRDFGHDKLPVYGIGKEKSQEHWVSVLRQLIHLGLLNQNIT-MHSAVQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
SARP GEM + V +LK A ++ G D +L+ L +
Sbjct: 497 -SARP--------VLRGEM----PLQLAVPRVINLKPRANQKSYG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P T L NI+GV + G + IR
Sbjct: 543 RKSIADEDNIPPYVVFSDATLLEMAELMPITAGELLNINGVGHRKLERFGAPFMNMIR 600
>gi|145632079|ref|ZP_01787814.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655]
gi|145634861|ref|ZP_01790569.1| organic solvent tolerance protein [Haemophilus influenzae PittAA]
gi|144986986|gb|EDJ93516.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655]
gi|145268027|gb|EDK08023.1| organic solvent tolerance protein [Haemophilus influenzae PittAA]
Length = 619
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q KL ++G+GKD S W+++ QLI G++ + I ++ T+ +++ K L
Sbjct: 447 NQKIIERQHHKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVISELNPTLQLTESAKVIL 506
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P L + A IS K + + +G + D L+ L
Sbjct: 507 KGEEP-------LELAMPRISA-----IS------KIAHNPQRQGVANYDKDLFARLRFL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P++ + I+GV
Sbjct: 549 RKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGV 589
>gi|332300231|ref|YP_004442152.1| ATP-dependent DNA helicase RecQ [Porphyromonas asaccharolytica DSM
20707]
gi|332177294|gb|AEE12984.1| ATP-dependent DNA helicase RecQ [Porphyromonas asaccharolytica DSM
20707]
Length = 733
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
+ D DKL +G+G D+S + W+ + + + YLTE+ + Y +SV+ GK+++
Sbjct: 443 IEDFHHDKLDSYGIGSDYSRDVWELVVERALVLQYLTES-TETYGILSVTPSGKKFI--- 498
Query: 64 RPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKK 123
+ P + + + + ++ SS + + D LY++L + RKK
Sbjct: 499 ----KKPTSFKIVTPDEEDLDDDEDLDDDEEMDSSVSGGRGRTASTDPALYNILKDMRKK 554
Query: 124 LARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
L+ G P + D +++++ P T L NI G+N +G+ ++ IR+
Sbjct: 555 LSIKLGLGPNGVFPDSALEEMSTLYPITLPELKNISGINVEQADRYGEDFVRVIRN 610
>gi|254361946|ref|ZP_04978077.1| ATP-dependent helicase RecQ [Mannheimia haemolytica PHL213]
gi|452745568|ref|ZP_21945402.1| ATP-dependent DNA helicase RecQ [Mannheimia haemolytica serotype 6
str. H23]
gi|153093493|gb|EDN74473.1| ATP-dependent helicase RecQ [Mannheimia haemolytica PHL213]
gi|452086443|gb|EME02832.1| ATP-dependent DNA helicase RecQ [Mannheimia haemolytica serotype 6
str. H23]
Length = 599
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 79/176 (44%), Gaps = 21/176 (11%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
K+ + Q D+L ++G+GK+ S ++W+ + QLI G + + I + Q S
Sbjct: 438 KIREHQHDQLSVYGIGKEQSQHYWQNVVRQLIHLGLIIQNIAN--------HSALQLTES 489
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
ARP + E+ ++ + ++A ++ + D L+ L RK
Sbjct: 490 ARP-------------FLRGEKQLQLALPRLGISATAFVQKQASHRYDKDLFARLRFLRK 536
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
++A + PY + D T++++A P++K + I+GV + G + I+
Sbjct: 537 QIADLENIPPYIVFNDATLQEMAEFLPTSKVEMLEINGVGERKFERFGQAFMSLIK 592
>gi|313205605|ref|YP_004044782.1| ATP-dependent DNA helicase recq [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|383484930|ref|YP_005393842.1| ATP-dependent DNA helicase recq [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|312444921|gb|ADQ81276.1| ATP-dependent DNA helicase RecQ [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|380459615|gb|AFD55299.1| ATP-dependent DNA helicase recq [Riemerella anatipestifer ATCC
11845 = DSM 15868]
Length = 734
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 19/203 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
G+GK+ S N+WK++ Q GY+ + I + Y + +S +G++ + D +P L+
Sbjct: 458 FFGIGKETSDNYWKSIIRQATVRGYIIKDI-ETYGILRISDKGQKIVSGK--DKEPFLI- 513
Query: 74 TFNGEMVDAEEHE-TISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAP 132
AE+ E ++ D S ++ +G D L++ L + RKK+A+ G P
Sbjct: 514 --------AEDREYDLAQTKAD---SDQVQLQGGGGLDKVLFNQLKDLRKKIAQKQGIPP 562
Query: 133 YALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSL-DGK 191
Y + D +++ + + P T +A + GV + G + I+ + N+ D
Sbjct: 563 YTVFMDPSLEDMTVQYPITIEEIAKVYGVGEGKAKKFGKEFAEFIKKYVEDNNIERPDDM 622
Query: 192 VGEHTA--FTRKLHVVVNTRTKL 212
V + A + K+ ++ NT K+
Sbjct: 623 VLKKVANKSSHKVFIIQNTDKKI 645
>gi|170718152|ref|YP_001785180.1| ATP-dependent DNA helicase RecQ [Haemophilus somnus 2336]
gi|168826281|gb|ACA31652.1| ATP-dependent DNA helicase RecQ [Haemophilus somnus 2336]
Length = 624
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 19/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ + Q DKL + G+GKD S +W+++ QLI G + + I T+ ++ L
Sbjct: 456 NQKIKEYQHDKLSVFGIGKDRSREYWQSVIRQLIHLGLIKQVIDHFNITLQLTLDSLPIL 515
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+P + + + + ++ T+ + D L+ L
Sbjct: 516 RGEQP-------------------LQLATPRISSITNAVTIPKRAVTNYDKDLFARLRFL 556
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RKK+A PY + D T++++A +P T+ + I+GV
Sbjct: 557 RKKIADKENIPPYIVFNDATLQEMAQYQPITEQEMIQINGV 597
>gi|313885824|ref|ZP_07819567.1| ATP-dependent DNA helicase RecQ [Porphyromonas asaccharolytica
PR426713P-I]
gi|312924728|gb|EFR35494.1| ATP-dependent DNA helicase RecQ [Porphyromonas asaccharolytica
PR426713P-I]
Length = 733
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
+ D DKL +G+G D+S + W+ + + + YLTE+ + Y +SV+ GK+++
Sbjct: 443 IEDFHHDKLDSYGIGSDYSRDVWELVVERALVLQYLTES-TETYGILSVTPSGKKFI--- 498
Query: 64 RPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKK 123
+ P + + + + ++ SS + + D LY++L + RKK
Sbjct: 499 ----KKPTSFKIVTPDEEDLDDDEDLDDDEEMDSSVSGGRGRTASTDPALYNILKDMRKK 554
Query: 124 LARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
L+ G P + D +++++ P T L NI G+N +G+ ++ IR+
Sbjct: 555 LSIKLGLGPNGVFPDSALEEMSTLYPITLPELKNISGINVEQADRYGEDFVRVIRN 610
>gi|387126473|ref|YP_006295078.1| ATP-dependent DNA helicase RecQ [Methylophaga sp. JAM1]
gi|386273535|gb|AFI83433.1| ATP-dependent DNA helicase RecQ [Methylophaga sp. JAM1]
Length = 708
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 130/313 (41%), Gaps = 56/313 (17%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+++ Q D+L G+G D ++ W+ + QLI+ GYL I + Y + ++++ + L
Sbjct: 442 ERIKTNQHDQLSTFGIGSDLTATQWRGIFRQLIATGYLDIDI-NRYGALRLTEKCRAILR 500
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
+ LLL + +T+S D K S D +L+ L + R
Sbjct: 501 G-----EQKLLLR------KQQAKQTLSKK--DKKQSTV------RPQDQELWEALRQLR 541
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH-- 179
++A+ G P+ + D T++++ RP+ +A I GV + +G L I+
Sbjct: 542 TEIAQQNGVPPFVIFHDSTLQEMCQTRPNDMQAMARISGVGAQKLEHYGQRFLTVIQQFP 601
Query: 180 LSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGR 239
LS+ LN L V + M HE GLS +IA +
Sbjct: 602 LSELLNNGLRDTVNQTL-------------------------MLHEQGLSPDQIA----K 632
Query: 240 SAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK-DKLKPIK 298
+K T+ +L + + G ++ ++ D L D F+ I I +G + D LK +
Sbjct: 633 QRELKVSTIYSHLSDGIEAGL-LDVKKVLD---LADNEFNEIISTIESLGDEADSLKNVF 688
Query: 299 NELPDDITYAHIK 311
L + Y I+
Sbjct: 689 EALDEAYDYGVIR 701
>gi|68249329|ref|YP_248441.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 86-028NP]
gi|229844599|ref|ZP_04464738.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 6P18H1]
gi|68057528|gb|AAX87781.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 86-028NP]
gi|229812313|gb|EEP48003.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 6P18H1]
Length = 619
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q KL ++G+GKD S W+++ QLI G++ + I ++ T+ +++ K L
Sbjct: 447 NQKIIERQHHKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVISELNPTLQLTESAKVIL 506
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P M I+ N + +G + D L+ L
Sbjct: 507 KGEEP---------LELAMPRISSISKIAHNP---------QRQGVANYDKDLFARLRFL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P++ + I+GV
Sbjct: 549 RKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGV 589
>gi|415758430|ref|ZP_11481551.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416048573|ref|ZP_11576347.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347992536|gb|EGY33932.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|348655277|gb|EGY70749.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D17P-3]
Length = 629
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 82/178 (46%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D ++L ++G+GK+H + +W+++ QL+ G + + I + T+ +++ K
Sbjct: 462 NQKIRDQHHEQLSVYGIGKEHGTEYWQSVLRQLVHLGLVRQIIGEYGNTLQLTENAK--- 518
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GE E E + + + ++A + + L+ L
Sbjct: 519 ---------PIL---RGE----EPLELATPRLSSIVTTAMMPKSAVGSYNKDLFARLRFL 562
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A +P + + I+GV + G L IR
Sbjct: 563 RKQIADKENIPPYIVFNDATLQEMAQYQPVSNIEMLQINGVGAIKLERFGQAFLALIR 620
>gi|414079433|ref|YP_007000857.1| ATP-dependent DNA helicase RecQ [Anabaena sp. 90]
gi|413972712|gb|AFW96800.1| ATP-dependent DNA helicase RecQ [Anabaena sp. 90]
Length = 729
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 25/187 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++V + D+L +G+GKD + + W+ L L+ G L E D Y + ++ + +
Sbjct: 442 NQRIVVNKHDQLSTYGIGKDKTVDEWRMLGRSLLHQG-LIEQTADGYSILKLNALSWEVM 500
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQ-LYHMLLE 119
RP +S V K + T E E AD++ L L
Sbjct: 501 RKQRP----------------------VSIAVPIAKKT-TWEEENVKAADVEVLMQKLRS 537
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
RK+LA PY + D T+K +A ++P T N+ GV H + +G+ L I+
Sbjct: 538 LRKELADEQAVPPYVIFHDSTLKLMAQSQPKTLDEFGNLSGVGSHKLSQYGERFLAEIQK 597
Query: 180 LSQKLNL 186
Q+ L
Sbjct: 598 YRQEQGL 604
>gi|384213982|ref|YP_005605145.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 6]
gi|354952878|dbj|BAL05557.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 6]
Length = 621
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 10/178 (5%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV DKL + G+G++ + W+T+ QL++ G+L + + + +++ +
Sbjct: 452 TEKVTQFGHDKLSVFGIGRELNETQWRTVLRQLVAMGHLYSD-SEAFGALKLTESAR--- 507
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
G R + + L G V A + S GDL +A N + D +L L
Sbjct: 508 GVLRGETEVWLREEAPGTRVRASRTK---SRRGDLAPAA---NAPQGDVDPELRARLRSW 561
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
R +AR G Y + D TI I A P+T L N+ G+ + +GD LLQ ++
Sbjct: 562 RSDIARERGVPAYVVLHDATIDGIVRAWPTTLDELRNVPGIGDKKLEHYGDELLQIVK 619
>gi|416052424|ref|ZP_11578281.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347992055|gb|EGY33485.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 629
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 83/178 (46%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ + + ++L ++G+GK+HS+ +W+++ QL+ G + + I + T+ +++ K
Sbjct: 462 NQKIREQRHEQLSVYGIGKEHSTEYWQSVLRQLVHLGLVRQIIGEYGNTLQLTENAK--- 518
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GE E E + + + ++A D L+ L
Sbjct: 519 ---------PIL---RGE----EPLELAAPRLSSIVTTAMTPKSAVGSYDKDLFARLRFL 562
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A +P + + I+GV + G L IR
Sbjct: 563 RKQIADKENIPPYIVFNDATLQEMAQYQPVSNIEMLQINGVGAIKLERFGPAFLALIR 620
>gi|408370738|ref|ZP_11168512.1| ATP-dependent DNA helicase recq [Galbibacter sp. ck-I2-15]
gi|407743730|gb|EKF55303.1| ATP-dependent DNA helicase recq [Galbibacter sp. ck-I2-15]
Length = 733
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 24/208 (11%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D+ G+GK++ + +W L Q++ GY+ + I+ Y + ++ +G ++L +H
Sbjct: 456 DERPFFGIGKENDAAYWMALIRQVLVQGYIRKEIEQ-YGVLHLNDKGVEFL-----NHPE 509
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
+T E+H + NV D SAT G + AD +L +L + RK+ A+
Sbjct: 510 SFKMT--------EDHSYVDKNV-DTIVSAT--KGGGAVADPKLLSLLKDLRKQQAKKLE 558
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLS-- 187
P+ + D +++ +AL P L NI GV + +G LQ I+ + ++
Sbjct: 559 VPPFVIFQDPSLEDMALKYPVDTEELLNIHGVGEGKAKKYGKPFLQLIQQYVEDNDIIRP 618
Query: 188 ---LDGKVGEHTAFTRKLHVVVNTRTKL 212
+ G ++A KL+V+ N KL
Sbjct: 619 DDLVVKSTGANSAL--KLYVIQNIDRKL 644
>gi|149178212|ref|ZP_01856806.1| ATP-dependent DNA helicase RecQ [Planctomyces maris DSM 8797]
gi|148842994|gb|EDL57363.1| ATP-dependent DNA helicase RecQ [Planctomyces maris DSM 8797]
Length = 611
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 16/176 (9%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
KKV+ DKL +GL K S + QL+S GYLT+T + Y+ + +++ G+Q L
Sbjct: 443 KKVLANGHDKLSTYGLLKTESLATIRHWINQLVSQGYLTKTAE--YQQLRITKTGRQLL- 499
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
+ + P L+ T + + ET + DL + L +G D L+ L R
Sbjct: 500 --KGEITPQLMRT-----TETSKSETNRAPKNDL---SQLNWKG---VDQDLFESLRLLR 546
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
K++A G PY + GD T++++A +P T + I GV Q G L I
Sbjct: 547 KQIAGEKGIQPYMVFGDATLRELARHKPQTLPQFLEIWGVGQKKCDDFGQQFLDCI 602
>gi|303236792|ref|ZP_07323371.1| ATP-dependent DNA helicase RecQ [Prevotella disiens FB035-09AN]
gi|302482960|gb|EFL45976.1| ATP-dependent DNA helicase RecQ [Prevotella disiens FB035-09AN]
Length = 750
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 20/172 (11%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
GLG+ + W + Q + GYL + +++ Y + ++ GK+++ S + ++
Sbjct: 481 FGLGEKEDTKIWNPVIRQALLEGYLKKDVEN-YGLIKLTAAGKRFMKSPKS-----FMIV 534
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYA 134
+ E + E++ VG G S AD +L+ ML + RK++AR G Y
Sbjct: 535 MDKEFKADDVDESL---VG-----------GISVADPELFAMLKDLRKQMARKLGVPAYV 580
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNL 186
+ D ++ ++A+ P T+ L NI GV +G + I+ ++ N+
Sbjct: 581 IFQDPSLDQMAMMYPITEQELQNIQGVGVGKAKRYGAEFCKLIQKYCKEKNI 632
>gi|404406052|ref|ZP_10997636.1| ATP-dependent DNA helicase RecQ [Alistipes sp. JC136]
Length = 730
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 17/164 (10%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
G G +H + +W + Q + G + + I++ Y +SV+++G+ Y+ A P P+ +T
Sbjct: 457 FGAGAEHDARFWGAVLRQALILGLVDKNIEN-YGLISVNKKGEGYI--ALP---FPVTVT 510
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYA 134
+ D +E E S +V + AD +L+ ML + RKK+A+ G P+
Sbjct: 511 LDH---DYDEEEKESESVAPMGKGGA--------ADEELFSMLKDLRKKVAKQHGLPPFV 559
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
+ D +++ +A+ P T + NI GV G+ ++ I+
Sbjct: 560 IFQDPSLEDMAVQYPITFEEMQNITGVGVGKARKFGEEFIKLIK 603
>gi|452209801|ref|YP_007489915.1| ATP-dependent DNA helicase RecQ [Methanosarcina mazei Tuc01]
gi|452099703|gb|AGF96643.1| ATP-dependent DNA helicase RecQ [Methanosarcina mazei Tuc01]
Length = 876
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 29/215 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+ + +KL HG G++ + W++LA ++++ G L E Y + ++ ++ L
Sbjct: 442 NKKIRQNRHEKLKSHGSGREFTKEQWRSLASEILNTG-LLEVHGAQYPVLKLNAMSRKIL 500
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLK-----------------------S 97
L+ +G + AEE T+ + G ++
Sbjct: 501 NGLEKVE----LVCPDGFIPGAEESFTLPAPAGKIQEKSENDKQIPAREDSVAPPLKIPK 556
Query: 98 SATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLAN 157
S T G +E D L+ L RKK+A PY + D ++K++A P T +
Sbjct: 557 SGTFPKSG-TEHDPILFERLKALRKKIALNKNLPPYIIFSDTSLKEMAAKFPLTSDEFHS 615
Query: 158 IDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKV 192
I GV H + +GD L+ I + L+ GKV
Sbjct: 616 ITGVGDHKLRKYGDEFLKEIGDYCRDYGLTPSGKV 650
>gi|428307721|ref|YP_007144546.1| ATP-dependent DNA helicase RecQ [Crinalium epipsammum PCC 9333]
gi|428249256|gb|AFZ15036.1| ATP-dependent DNA helicase RecQ [Crinalium epipsammum PCC 9333]
Length = 728
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 121/304 (39%), Gaps = 55/304 (18%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSAR------PDHQ 68
+G+GKD S WK L L+ G + ET D YR + ++ + + R P
Sbjct: 456 YGIGKDKSVEEWKMLGRSLLHQGLVDETT-DGYRILKLNAHSWEVMKRQREVYIAVPKKH 514
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
+N + +D E L+H L RK++A
Sbjct: 515 TTDTAKYNPKAIDVEI----------------------------LFHRLRSLRKQVADEQ 546
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSL 188
APY + D ++K +A +P T A I GV H + +G+ + I+ Q+ S+
Sbjct: 547 SIAPYVVFADSSLKLMAQQQPQTLDEFAQISGVGAHKLAQYGERFVDEIKTHRQEQQQSI 606
Query: 189 DGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKM-WHEDGLSIQKIANYPGRSAPIKEQT 247
+ T+K V V + + + H+ GL+I +IA + ++ T
Sbjct: 607 N---------TQKALVSVPEEQPKSATYTQLMTLELHQRGLNILEIA----KQRQLRSTT 653
Query: 248 VVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITY 307
+ +L E + ++ +L + + AI +AI VG + LK I L ++ +Y
Sbjct: 654 IASHLAELMELNLPVDVNQL-----VPRKHQEAILQAIKVVGA-ESLKIIYEHLGENYSY 707
Query: 308 AHIK 311
IK
Sbjct: 708 EEIK 711
>gi|254443570|ref|ZP_05057046.1| ATP-dependent DNA helicase RecQ [Verrucomicrobiae bacterium DG1235]
gi|198257878|gb|EDY82186.1| ATP-dependent DNA helicase RecQ [Verrucomicrobiae bacterium DG1235]
Length = 616
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 19/177 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV+ ++L + +G +H W+ +LI Y+ + D + +S++++GK L
Sbjct: 444 NEKVLKWGHERLTTYNIGGEHKRAEWQAFGRELIRNDYVFQD-PDAFGALSLTEKGKTAL 502
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P L ++ N D ++G E + L+ +L
Sbjct: 503 RERTPIQLTKLPVSANALQRDRNR------------------SKGGIECNEDLFSILRSL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
RK+LA G PY + D T++++A P+ + RL+ I GV + +G+ L+ I
Sbjct: 545 RKELADEQGVPPYIIFSDVTLREMARYFPANEDRLSEISGVGMKKLAAYGEAFLEAI 601
>gi|424885364|ref|ZP_18308975.1| ATP-dependent DNA helicase RecQ [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393177126|gb|EJC77167.1| ATP-dependent DNA helicase RecQ [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 622
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 16/164 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G GKD S W+++ QL++ G L + Y + + + + R
Sbjct: 469 VFGAGKDIPSRTWQSVYRQLLAMG-LIRVDHEAYGALKLEPEARAVFKQERQ-------- 519
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
F + A E T + + KS G S AD L+ L ER +A+ G PY
Sbjct: 520 VFFRKDRPASERRTKKAERSERKS-------GLSGADGSLFEALRAERMAIAKSLGVPPY 572
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D T+ A RP ++ L I GV Q + +GD L+ I
Sbjct: 573 VVFPDTTLIAFATERPRSRKELLAISGVGQAKLERYGDAFLEII 616
>gi|386399772|ref|ZP_10084550.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. WSM1253]
gi|385740398|gb|EIG60594.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. WSM1253]
Length = 623
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 10/178 (5%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV DKL + G+G++ + W+T+ QL++ G+L + + + ++ +
Sbjct: 454 TEKVTQFGHDKLTVFGIGRELNEKQWRTVLRQLVAMGHLLSD-SEAFGALKLTDSSR--- 509
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
G R + + L G + + + S GDL +A + D +L L
Sbjct: 510 GVLRGETEVWLREEAPGARIRSSRAK---SRRGDLAPAAGAAQ---GDVDPELRARLRAW 563
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
R ++AR G Y + D TI I A P+T L N+ G+ + +GD LLQ +R
Sbjct: 564 RSEIARARGVPAYVVLHDATIDGIVRAWPTTLDELRNVPGIGDKKLEHYGDELLQIVR 621
>gi|148978460|ref|ZP_01814934.1| ATP-dependent DNA helicase RecQ [Vibrionales bacterium SWAT-3]
gi|145962367|gb|EDK27647.1| ATP-dependent DNA helicase RecQ [Vibrionales bacterium SWAT-3]
Length = 612
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 20/176 (11%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
+V D DKL +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 450 RVRDNGHDKLSTYGIGRDHSHDYWISIFRQLIHKGLLFQNITR-NSTLQLTEEAR----- 503
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
PLL GEM + + V + KS L ++ + D +L+ L + RK
Sbjct: 504 -------PLL---RGEMSLELAVPRLDTAVRNAKSD-KLSSKNY---DKKLFAKLRKLRK 549
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
+A G PY + D T+ +A P++ + ++GV Q + + D L I+
Sbjct: 550 SIADEDGLPPYVVFSDATLIDMAEVLPTSYGEMLAVNGVGQRKLDKYADPFLDLIQ 605
>gi|424896169|ref|ZP_18319743.1| ATP-dependent DNA helicase RecQ [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393180396|gb|EJC80435.1| ATP-dependent DNA helicase RecQ [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 622
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 16/164 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G GKD S W+++ QL++ G L + Y + + + + R
Sbjct: 469 VFGAGKDIPSRTWQSVYRQLLAMG-LIRVDHEAYGALKLEPEARAVFKQERQ-------- 519
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
F + A E T + + KS G S AD L+ L ER +A+ G PY
Sbjct: 520 VFFRKDRPASERRTKKAERSERKS-------GLSGADGSLFEALRTERMAIAKSLGVPPY 572
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D T+ A RP ++ L I GV Q + +GD L+ I
Sbjct: 573 VVFPDTTLIAFATERPRSRKELLAISGVGQAKLERYGDAFLEII 616
>gi|425066310|ref|ZP_18469430.1| ATP-dependent DNA helicase RecQ [Pasteurella multocida subsp.
gallicida P1059]
gi|404381895|gb|EJZ78360.1| ATP-dependent DNA helicase RecQ [Pasteurella multocida subsp.
gallicida P1059]
Length = 632
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 19/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D Q ++L ++G+GKD S W+++ QLI G++ + T+ +++ K
Sbjct: 457 NQKIKDNQHEQLSVYGIGKDKSKEHWQSVIRQLIHLGFIKQVFDHFNATLQLTENAK--- 513
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GE + ISS L S + + D L+ L
Sbjct: 514 ---------PIL---RGEQPLSLAMPRISS----LTSVVAPQRYAIVQYDKDLFARLRFL 557
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A Y + D T++++A +P+TKA + I+GV
Sbjct: 558 RKQIADKENIPAYIVFNDATLQEMAQYQPTTKAEMLAINGV 598
>gi|21227319|ref|NP_633241.1| ATP-dependent DNA helicase [Methanosarcina mazei Go1]
gi|20905673|gb|AAM30913.1| ATP-dependent DNA helicase [Methanosarcina mazei Go1]
Length = 896
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 29/215 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KK+ + +KL HG G++ + W++LA ++++ G L E Y + ++ ++ L
Sbjct: 462 NKKIRQNRHEKLKSHGSGREFTKEQWRSLASEILNTGLL-EVHGAQYPVLKLNAMSRKIL 520
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLK-----------------------S 97
L+ +G + AEE T+ + G ++
Sbjct: 521 NGLEKVE----LVCPDGFIPGAEESFTLPAPAGKIQEKSENDKQIPAREDSVALPLKIPK 576
Query: 98 SATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLAN 157
S T G +E D L+ L RKK+A PY + D ++K++A P T +
Sbjct: 577 SGTFPKSG-TEHDPILFERLKALRKKIALNKNLPPYIIFSDTSLKEMAAKFPLTSDEFHS 635
Query: 158 IDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKV 192
I GV H + +GD L+ I + L+ GKV
Sbjct: 636 ITGVGDHKLRKYGDEFLKEIGDYCRDYGLTPSGKV 670
>gi|387771794|ref|ZP_10127951.1| ATP-dependent DNA helicase RecQ [Haemophilus parahaemolyticus
HK385]
gi|386908179|gb|EIJ72877.1| ATP-dependent DNA helicase RecQ [Haemophilus parahaemolyticus
HK385]
Length = 601
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D+L ++G+GK+ S ++W ++ QLI G + + I V+ Q ARP
Sbjct: 447 DQLSVYGIGKEQSQDYWVSVIRQLIHLGLIKQNI--------VNNSALQLTEEARP---- 494
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
++ +E +++ +SA + + D L+ L RK++A
Sbjct: 495 ---------VLRSEVKLELATPRLTFSASAYSQKQASIRYDKDLFARLRFLRKQIADKEN 545
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLSQK 183
PY + D T++++A P+TK + +I+GV + + GD + I+ HL+ +
Sbjct: 546 IPPYVVFNDATLEEMAQFTPTTKVEMLDINGVGERKLERFGDAFMNLIQSHLAAR 600
>gi|449127039|ref|ZP_21763313.1| ATP-dependent DNA helicase RecQ [Treponema denticola SP33]
gi|448944707|gb|EMB25584.1| ATP-dependent DNA helicase RecQ [Treponema denticola SP33]
Length = 626
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
K++++ + + L + G+G + + W L L++ YL + + Y +S++Q+ K+ L
Sbjct: 457 KRILENKHNDLSVWGIGTEFNREGWFNLVRILLAEDYLVKD--EDYSVLSLTQKAKEELQ 514
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
S + ++L FN E ++ + E V + T EN + + L ++R
Sbjct: 515 S-----RTSIMLPFNYEKDNSAKKE-----VKEKSKPQTFEN-NLDARGKAIVNALKQKR 563
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
++LA Y + D+TI +++ +P+T A L NI G+ + +GD +L+TI
Sbjct: 564 RELADEARVPAYVIFSDKTIFDLSIKKPATIAELDNIFGIGKAKKDKYGDIILKTI 619
>gi|417951017|ref|ZP_12594128.1| ATP-dependent DNA helicase RecQ [Vibrio splendidus ATCC 33789]
gi|342805457|gb|EGU40720.1| ATP-dependent DNA helicase RecQ [Vibrio splendidus ATCC 33789]
Length = 612
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 20/176 (11%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
+V D DKL +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 450 RVRDNGHDKLSTYGIGRDHSHDYWISIFRQLIHKGLLFQNITR-NSTLQLTEEAR----- 503
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
PLL GEM + + V + KS L ++ + D +L+ L + RK
Sbjct: 504 -------PLL---RGEMSLELAVPRLDTAVRNAKSD-KLSSKNY---DKKLFAKLRKLRK 549
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
+A G PY + D T+ +A P++ + ++GV Q + + D L I+
Sbjct: 550 SIADEDGLPPYVVFSDATLIDMAEVLPTSYGEMLAVNGVGQRKLDKYADPFLDLIQ 605
>gi|340351994|ref|ZP_08674884.1| ATP-dependent helicase RecQ [Prevotella pallens ATCC 700821]
gi|339615729|gb|EGQ20399.1| ATP-dependent helicase RecQ [Prevotella pallens ATCC 700821]
Length = 727
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
GLG+ W + Q + GYL + +++ Y + ++ GKQ+L + ++
Sbjct: 459 GLGEKEDPKIWNPVIRQAMLDGYLKKDVEN-YGLLRLTAAGKQFLKEPKS-----FMIVM 512
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
+ E + E + VG G S AD +LY ML + RK LAR G Y +
Sbjct: 513 DKEFKTDDVDECM---VG-----------GTSVADPELYAMLKDLRKHLARKLGIPAYVI 558
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNL 186
D ++ ++A+ P T+ L NI GV +G+ + I+ ++ N+
Sbjct: 559 FQDPSLDQMAMMYPVTEEELQNIQGVGVGKAKRYGEEFCKLIKKYCKEKNI 609
>gi|302878781|ref|YP_003847345.1| ATP-dependent DNA helicase RecQ [Gallionella capsiferriformans
ES-2]
gi|302581570|gb|ADL55581.1| ATP-dependent DNA helicase RecQ [Gallionella capsiferriformans
ES-2]
Length = 610
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 18/185 (9%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+++V +L G+G +H++ W ++ QLI+ GYL I+ + G
Sbjct: 442 TERVTKFGHKQLSTFGIGVEHTAQQWSSVYRQLIAGGYLEADIE--------AYGGLMLT 493
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKS-SATLENEGFSEADM-QLYHMLL 118
+ARP GE + +T + +KS + + E FS A+ +L+ L
Sbjct: 494 ATARP--------VLRGEQPVSLRRDTEPAKRKSVKSGTESKSREPFSGANEDRLWLALK 545
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
+R +LAR G PY + D T+ ++ RP + + +I G+ Q + +GD L+ I
Sbjct: 546 AKRMELAREQGVPPYVIFHDSTLLEMHDQRPGSLTDMGHISGIGQGKLARYGDDFLKVIE 605
Query: 179 HLSQK 183
++ +
Sbjct: 606 DVANR 610
>gi|374572158|ref|ZP_09645254.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. WSM471]
gi|374420479|gb|EHR00012.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. WSM471]
Length = 621
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 10/178 (5%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV DKL + G+G++ + W+T+ QL++ G+L + + + +++ +
Sbjct: 452 TEKVTQFGHDKLTVFGIGRELNEKQWRTVLRQLVAMGHLLSD-SEAFGALKLTESSR--- 507
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
G R + + L G + + + S GDL +A + D +L L
Sbjct: 508 GVLRGETEVWLREEAPGARIRSSRAK---SRRGDLAPAAGAPQ---GDVDPELRARLRAW 561
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
R ++AR G Y + D TI I A P+T L N+ G+ + +GD LLQ +R
Sbjct: 562 RSEIARERGVPAYVVLHDATIDGIVRAWPTTLDELRNVPGIGDKKLEHYGDELLQIVR 619
>gi|89094035|ref|ZP_01166979.1| ATP-dependent DNA helicase RecQ [Neptuniibacter caesariensis]
gi|89081709|gb|EAR60937.1| ATP-dependent DNA helicase RecQ [Oceanospirillum sp. MED92]
Length = 707
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 11 KLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPP 70
KL G+GKD N W+++ QL++ G L V+V Q G +L D P
Sbjct: 448 KLSTWGIGKDLDKNQWRSVFRQLVARGMLG---------VNVDQHGVLHL----TDKCRP 494
Query: 71 LLLTFNGEMVDAEEHETISSNVGDLKSSATLENE----GFSEADMQLYHMLLEERKKLAR 126
LL GE E I KS A +N+ A+ L++ L ERKKLA
Sbjct: 495 LL---RGE-------EKIQLRKDQRKSVAYTKNQVPQSKLEAAEYALWNDLKAERKKLAD 544
Query: 127 VTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
G PY + D T+ ++ + RP T + ++GV + + +G L I
Sbjct: 545 EQGVPPYVIFHDATLMEMVMYRPQTADQFKRLNGVGERKLDLYGSDFLAVI 595
>gi|419801388|ref|ZP_14326616.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK262]
gi|419845355|ref|ZP_14368628.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK2019]
gi|385193739|gb|EIF41095.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK262]
gi|386415831|gb|EIJ30351.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK2019]
Length = 618
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+V+ Q DKL ++G+GKD S W+++ QLI G++ + + + + + ++ Q
Sbjct: 446 NQKIVERQHDKLSVYGIGKDKSKEHWQSVIRQLIHLGFIQQVLGE-FNSATL-----QLT 499
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
SARP GE+ ISS + +S + D L+ L
Sbjct: 500 ESARP--------VLKGEVPLELAMPRISSVNKIVHTS---HKNTVANYDKDLFARLRFL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK+LA PY + D T++++A P++ + I+GV + G + IR
Sbjct: 549 RKQLADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGVGAIKLERFGQPFMALIR 606
>gi|429753766|ref|ZP_19286544.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 326
str. F0382]
gi|429171815|gb|EKY13407.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 326
str. F0382]
Length = 729
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 21/170 (12%)
Query: 8 QFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDH 67
+ D+ G+GKD +W L Q++ G + + I + Y + ++ +GK++L
Sbjct: 454 RIDEQDFFGIGKDKDDAYWMALLRQVMVNGLIRKDI-ETYGVMFITDKGKEFLKEV---- 508
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
P ++T E+H + D+ S+ + AD L ML + RKK+A+
Sbjct: 509 -PSFMMT--------EDH-SYEEEPEDINSANAV------AADPVLLDMLKDLRKKVAKQ 552
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
G P+ + D +++ +AL P T L N+ G+ + +G ++ I
Sbjct: 553 KGVPPFVVFQDPSLEDMALKYPITIQELTNVHGIGEGKAKKYGSEFVKLI 602
>gi|84393647|ref|ZP_00992398.1| ATP-dependent DNA helicase RecQ [Vibrio splendidus 12B01]
gi|84375715|gb|EAP92611.1| ATP-dependent DNA helicase RecQ [Vibrio splendidus 12B01]
Length = 612
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 20/176 (11%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
+V D DKL +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 450 RVRDNGHDKLSTYGIGRDHSHDYWISIFRQLIHKGLLFQNITR-NSTLQLTEEAR----- 503
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
PLL GEM + + V + KS L ++ + D +L+ L + RK
Sbjct: 504 -------PLL---RGEMSLELAVPRLDTAVRNAKSD-KLSSKNY---DKKLFAKLRKLRK 549
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
+A G PY + D T+ +A P++ + ++GV Q + + D L I+
Sbjct: 550 SIADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVNGVGQRKLDKYADPFLDLIQ 605
>gi|407072033|ref|ZP_11102871.1| ATP-dependent DNA helicase RecQ [Vibrio cyclitrophicus ZF14]
Length = 612
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 20/176 (11%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
+V D DKL +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 450 RVRDNGHDKLSTYGIGRDHSHDYWISIFRQLIHKGLLFQNITR-NSTLQLTEEAR----- 503
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
PLL GEM + + V + KS L ++ + D +L+ L + RK
Sbjct: 504 -------PLL---RGEMSLELAVPRLDTAVRNAKSD-KLSSKNY---DKKLFAKLRKLRK 549
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
+A G PY + D T+ +A P++ + ++GV Q + + D L I+
Sbjct: 550 SIADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVNGVGQRKLDKYADPFLDLIQ 605
>gi|307566216|ref|ZP_07628664.1| ATP-dependent DNA helicase RecQ [Prevotella amnii CRIS 21A-A]
gi|307345074|gb|EFN90463.1| ATP-dependent DNA helicase RecQ [Prevotella amnii CRIS 21A-A]
Length = 727
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
+ D + +KLL G G++ ++ W + Q I GY+ +++ ++Y + ++ +G++++ S
Sbjct: 447 IRDHKHEKLLTFGAGENINNKVWNPVIRQAILKGYIKKSV-ELYGLLKITAKGEKFIKS- 504
Query: 64 RPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKK 123
P + ++DAE E +V D+ S G S D +L+ ML RK
Sbjct: 505 -----PESFMI----VLDAEFKE----DVNDIDSY-----NGGSVLDPELFTMLKGLRKT 546
Query: 124 LARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+A G PY + D +++++A+ P + L NI GV +G+ + I
Sbjct: 547 VAHKFGVPPYVVFQDVSLEQMAMMYPINEQELQNIQGVGAGKAKRYGEEFYKLI 600
>gi|213962479|ref|ZP_03390741.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sputigena Capno]
gi|213954805|gb|EEB66125.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sputigena Capno]
Length = 727
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 21/170 (12%)
Query: 8 QFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDH 67
+ D+ G+GKD +W L Q++ G + + I + Y + ++ +GK++L
Sbjct: 452 RIDEQDFFGIGKDKDDAYWMALLRQVMVNGLIRKDI-ETYGVMFITDKGKEFLKEV---- 506
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
P ++T E+H + D+ S+ + AD L ML + RKK+A+
Sbjct: 507 -PSFMMT--------EDH-SYEEEPEDINSANAV------AADPVLLDMLKDLRKKVAKQ 550
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
G P+ + D +++ +AL P T L N+ G+ + +G ++ I
Sbjct: 551 KGVPPFVVFQDPSLEDMALKYPITIQELTNVHGIGEGKAKKYGSEFVKLI 600
>gi|86148265|ref|ZP_01066561.1| ATP-dependent DNA helicase RecQ [Vibrio sp. MED222]
gi|85833961|gb|EAQ52123.1| ATP-dependent DNA helicase RecQ [Vibrio sp. MED222]
Length = 612
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 20/176 (11%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
+V D DKL +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 450 RVRDNGHDKLSTYGIGRDHSHDYWISIFRQLIHKGLLFQNITR-NSTLQLTEEAR----- 503
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
PLL GEM + + V + KS L ++ + D +L+ L + RK
Sbjct: 504 -------PLL---RGEMSLELAVPRLDTAVRNAKSD-KLSSKNY---DKKLFAKLRKLRK 549
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
+A G PY + D T+ +A P++ + ++GV Q + + D L I+
Sbjct: 550 SIADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVNGVGQRKLDKYADPFLDLIQ 605
>gi|424918772|ref|ZP_18342136.1| ATP-dependent DNA helicase RecQ [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392854948|gb|EJB07469.1| ATP-dependent DNA helicase RecQ [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 621
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 16/164 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G GKD S W+++ QL++ G L + Y + + + + R
Sbjct: 469 VFGAGKDIPSRTWQSVYRQLLAMG-LIRVDHEAYGALKLEPEARAVFKQERQ-------- 519
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
F + A E T + + KS G S AD L+ L ER +A+ G PY
Sbjct: 520 VFFRKDRPASERRTKKAERSERKS-------GLSGADGTLFDALRAERMAIAKSLGVPPY 572
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D T+ A RP ++ L I GV Q + +GD L+ I
Sbjct: 573 VVFPDTTLIAFATERPRSRKELLAISGVGQAKLERYGDAFLEII 616
>gi|418465350|ref|ZP_13036287.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359756282|gb|EHK90441.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 629
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 79/178 (44%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ + + ++L ++G+GK+HS+ +W+++ QL+ G + + I + T+ +++ K L
Sbjct: 462 NQKIREQRHEQLSVYGIGKEHSTEYWQSVLRQLVHLGLVRQIIGEYGNTLQLTENAKPIL 521
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P E + + + ++A D L+ L
Sbjct: 522 RGEAP-------------------LELATPRLSSIVTTAMTPKSAVGSYDKDLFARLRFL 562
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A +P + + I+GV + G L IR
Sbjct: 563 RKQIADKENIPPYIVFNDATLQEMAQYQPVSNIEMLQINGVGAIKLERFGQAFLALIR 620
>gi|402571457|ref|YP_006620800.1| ATP-dependent DNA helicase, RecQ-like protein [Desulfosporosinus
meridiei DSM 13257]
gi|402252654|gb|AFQ42929.1| ATP-dependent DNA helicase, RecQ-like protein [Desulfosporosinus
meridiei DSM 13257]
Length = 726
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 99/213 (46%), Gaps = 22/213 (10%)
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
++ L+ L E R++LA PY + D T++++A P + ++ GV + + +
Sbjct: 518 EVSLFEKLRELRRELAIRENLPPYLIFADSTLREMAQICPMDHGAMISVSGVGERKLEKY 577
Query: 170 GDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKL--------HVVVNTRTKLTPAKYEAWK 221
G+ L+ I+ + + E + L V+ N++ + + ++
Sbjct: 578 GNEFLEVIKRFLENAAIDKKENSSEKCVSAKCLAQQDKTGPEVIANSKAS---SHLQTFQ 634
Query: 222 MWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAI 281
M+ E G S+ IA + PI TV ++ + +G + W D + E+ I
Sbjct: 635 MYKE-GHSLAAIAKI-RKVTPI---TVQNHFVRCSMDGHAVPWD---DFIPKEQEV--HI 684
Query: 282 QEAISKVGCKDKLKPIKNELPDDITYAHIKACL 314
EAI +VG +KL+PIK+ LPD++ + I+A L
Sbjct: 685 LEAIRQVG-GEKLRPIKDLLPDEVEWFTIRAVL 716
>gi|218710963|ref|YP_002418584.1| ATP-dependent DNA helicase RecQ [Vibrio splendidus LGP32]
gi|218323982|emb|CAV20344.1| RecQ [Vibrio splendidus LGP32]
Length = 612
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 20/176 (11%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
+V D DKL +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 450 RVRDNGHDKLSTYGIGRDHSHDYWISIFRQLIHKGLLFQNITR-NSTLQLTEEAR----- 503
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
PLL GEM + + V + KS L ++ + D +L+ L + RK
Sbjct: 504 -------PLL---RGEMSLELAVPRLDTAVRNAKSD-KLSSKNY---DKKLFAKLRKLRK 549
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
+A G PY + D T+ +A P++ + ++GV Q + + D L I+
Sbjct: 550 SIADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVNGVGQRKLDKYADPFLDLIQ 605
>gi|402488279|ref|ZP_10835091.1| ATP-dependent DNA helicase RecQ [Rhizobium sp. CCGE 510]
gi|401812670|gb|EJT05020.1| ATP-dependent DNA helicase RecQ [Rhizobium sp. CCGE 510]
Length = 434
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 16/167 (9%)
Query: 11 KLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPP 70
++ + G GKD + W+++ Q+++ G L + Y + + + + RP
Sbjct: 278 QMPVFGAGKDIPARVWQSVFRQMLAMG-LVRVDHEAYGALKLEPEARAVFKHERP----- 331
Query: 71 LLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGT 130
F + A E T K+ T G S AD L+ L ER +A+ G
Sbjct: 332 ---VFFRKDRPASERRT-------KKAERTERKSGLSGADGTLFEALRAERMAIAKSLGV 381
Query: 131 APYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D T+ A +P ++ L I GV Q + +GD L+ I
Sbjct: 382 PPYVVFPDTTLIAFATDKPRSRKELLAISGVGQAKLERYGDAFLEII 428
>gi|209550282|ref|YP_002282199.1| ATP-dependent DNA helicase RecQ [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209536038|gb|ACI55973.1| ATP-dependent DNA helicase RecQ [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 621
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 16/164 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G GKD S W+++ QL++ G L + Y + + + + R
Sbjct: 469 VFGAGKDIPSRTWQSVYRQLLAMG-LIRVDHEAYGALKLEPEARAVFKQERQ-------- 519
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
F + A E T + + KS G S AD L+ L ER +A+ G PY
Sbjct: 520 VFFRKDRPASERRTKKAERSERKS-------GLSGADGTLFDALRAERMAIAKSLGVPPY 572
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D T+ A RP ++ L I GV Q + +GD L+ I
Sbjct: 573 VVFPDTTLIAFATERPRSRKELLAISGVGQAKLERYGDAFLEII 616
>gi|153940560|ref|YP_001390343.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum F str.
Langeland]
gi|384461415|ref|YP_005674010.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum F str.
230613]
gi|152936456|gb|ABS41954.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum F str.
Langeland]
gi|295318432|gb|ADF98809.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum F str.
230613]
Length = 709
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 98/206 (47%), Gaps = 19/206 (9%)
Query: 108 EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVI 167
+AD +L+ +L + RK +++ P+ + D T+K+++ P+ + L I G+ +
Sbjct: 515 KADNELFEILKQLRKAISQEESVPPFMIFPDATLKELSEYMPTKEEDLLKIKGIGERKAE 574
Query: 168 THGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDG 227
+G+ ++ I + + ++ + + K ++ K Y +K +G
Sbjct: 575 VYGERFIEAITEYMNEKGIDINNMDNYESTKSNK-----ESKIKTHVLSYNLYK----EG 625
Query: 228 LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISK 287
+I++I+ +K T+ ++L + +SEG +++ + + I + I K
Sbjct: 626 KTIKEIS----EERNLKAITIQEHLFKCLSEGMEVDLDNF-----IKKDYEKLILDTIKK 676
Query: 288 VGCKDKLKPIKNELPDDITYAHIKAC 313
VG KLKP+K+ELP ++ Y IK+
Sbjct: 677 VGGT-KLKPVKDELPLEVDYMCIKSV 701
>gi|392969325|ref|ZP_10334740.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
gi|387841519|emb|CCH56798.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
Length = 736
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 24/175 (13%)
Query: 10 DKLLLHGLGK--DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARP-- 65
++L ++G G+ + +S +W +L Q+ YGY+ + + D Y + ++Q+G Y+ P
Sbjct: 451 NRLEVYGKGREFNETSEFWCSLLKQITIYGYIEKDV-DNYGVLKLTQRGLNYIEDPYPIS 509
Query: 66 ---DHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
DH ++ ++ + E E D+ +A G + D +L +L RK
Sbjct: 510 LSKDHH------YDQQVAEGREDED-----KDVAPTA-----GGNAYDEELLGLLKALRK 553
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
K+A+ G PY + D +++++A P+T+ +A I+GV V G + I
Sbjct: 554 KVAKEKGLPPYVIFQDPSMEEMATTYPTTREEMAQINGVGMGKVQKFGRPFIDLI 608
>gi|145297285|ref|YP_001140126.1| ATP-dependent DNA helicase RecQ [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418362038|ref|ZP_12962682.1| ATP-dependent DNA helicase RecQ [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142850057|gb|ABO88378.1| ATP-dependent DNA helicase RecQ [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356686673|gb|EHI51266.1| ATP-dependent DNA helicase RecQ [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 607
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 24/180 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL +G+GKD S +W ++ QLI G LT+ I R + + Q
Sbjct: 443 NQRIKDHGHDKLSTYGIGKDQSHEYWMSVIRQLIHKGLLTQNIT---RNLVL-----QLT 494
Query: 61 GSARPDHQPPLLLTFNGEM---VDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
++RP GEM + + ISS K + L+N + D +L+ L
Sbjct: 495 EASRP--------VLRGEMKLELAVPRLQPISSR--KEKRNGLLDNANY---DKRLFKEL 541
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
RK++A PY + D T+ ++A P T+A + I+GV + G+ + I
Sbjct: 542 RGLRKQIAEDEEVPPYVVFNDATLVEMAQLMPMTEAEMLAINGVGHRKLERFGEAFMDLI 601
>gi|417843805|ref|ZP_12489870.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21127]
gi|341948268|gb|EGT74898.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21127]
Length = 619
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 18/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q DKL ++G+GKD S W+++ QLI G++ + I ++ + +++ K L
Sbjct: 447 NQKIIERQHDKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVISELNPMLQLTESAKAIL 506
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P L + A IS K + + + + D L+ L
Sbjct: 507 KGEEP-------LELAMPRISA-----IS------KIAHNPQRQSVANYDKDLFARLRFL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P++ + I+GV
Sbjct: 549 RKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGV 589
>gi|301619865|ref|XP_002939304.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Xenopus
(Silurana) tropicalis]
Length = 1431
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/386 (21%), Positives = 152/386 (39%), Gaps = 78/386 (20%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDV-YRTV-SVSQQGKQYLGSARPDHQPPL 71
L GKD + +WK LA QLIS GYL E+ + T+ ++ +G +L A P L
Sbjct: 943 LFSCGKDQTEAFWKVLARQLISEGYLQESSGHTKFSTICGLTSKGTNWLMKASNQQHPRL 1002
Query: 72 LLTFNGEM--------------------------------------------VDAEEHET 87
LL N E+ +E
Sbjct: 1003 LLPSNDELCLRRTTVSNISRVPSHSSMIPHASPNTRSSIPKAGPEKISLKEKFSYQEAGK 1062
Query: 88 ISSNVGDLKSSATLEN---------EGFSEADMQL----YHMLLEERKKLARVTGTAPYA 134
+S+ V KSS L+ S +M+L Y L+ R+K+A P
Sbjct: 1063 LSTAVDVSKSSLKLQTPCKPLQAAEPDVSPKEMELQTTLYGRLVVARQKIASERDIPPAV 1122
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH--LSQKLNLSLDGKV 192
L ++ + +A RP+T + +DGV++ L++ ++ ++ L + + +
Sbjct: 1123 LATNKVLVDMAKLRPTTIENMKKLDGVSEAKSAMLAP-LVEVVKEFCIANSLKMDIFSRS 1181
Query: 193 GEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYL 252
G + T ++ T L ++ ++ ++ E LS++K+A+ + + V +L
Sbjct: 1182 GSQSELTSSTQREQDS-TTLPESQRMSYSLFQEQNLSLKKVAD----ARCLSMAAVGMHL 1236
Query: 253 LEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKL---KPIKNELPDDITYAH 309
+A+ G+ ++ R GLT I I + I L K I+ +P +I
Sbjct: 1237 WQALKAGYSVDVQR----AGLTPGIRKLIIDNIKNPPINSDLSSFKAIRESIPANIDSYL 1292
Query: 310 IKACLVM----ENCGISPEVIPPSQK 331
I+ + + E+ G ++ P+QK
Sbjct: 1293 IRMAIALLEKEESNGAQGQLDLPTQK 1318
>gi|228470561|ref|ZP_04055418.1| ATP-dependent DNA helicase RecQ [Porphyromonas uenonis 60-3]
gi|228307688|gb|EEK16664.1| ATP-dependent DNA helicase RecQ [Porphyromonas uenonis 60-3]
Length = 734
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
+ D DKL +G+G+D+S W+ + + + YLTE+ + Y +SV+ GK+++
Sbjct: 443 IEDFHHDKLKSYGIGEDYSREIWELVVERALVLQYLTES-TETYGILSVTPSGKKFI--K 499
Query: 64 RPDHQPPLLLTFNGEMVDAEEHETISSNVG---DLKSSATLENEGFSEADMQLYHMLLEE 120
+P +F DAE+ + ++ ++ S+A+ + D LY +L +
Sbjct: 500 KPT-------SFKIVAPDAEDLDDDDDDLDDDDEVDSAASSGRGRTASTDPALYSILRDI 552
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
RKKL+ G + D +++++ P T L NI G+N +G+ ++ IR+
Sbjct: 553 RKKLSTKLGLGTAGIFPDSALEEMSTLYPITLQELKNISGINVEQADKYGEEFVRIIRN 611
>gi|345429420|ref|YP_004822538.1| ATP-dependent DNA helicase [Haemophilus parainfluenzae T3T1]
gi|301155481|emb|CBW14947.1| ATP-dependent DNA helicase [Haemophilus parainfluenzae T3T1]
Length = 621
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q DKL ++G+GKD S W+++ QLI G++ + I + + + ++ Q
Sbjct: 449 NQKILERQHDKLSVYGIGKDKSKEHWQSVIRQLIHLGFIQQVIGE-FNSATL-----QLT 502
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
SARP GE+ ISS + +S + D L+ L
Sbjct: 503 ESARP--------VLKGEVPLELAMPRISSINKIVHTS---HKNTVANYDKDLFARLRFL 551
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK+LA PY + D T++++A P++ + I+GV + G + IR
Sbjct: 552 RKQLADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGVGAIKLERFGQPFMALIR 609
>gi|257057272|ref|YP_003135104.1| ATP-dependent DNA helicase RecQ [Saccharomonospora viridis DSM
43017]
gi|256587144|gb|ACU98277.1| ATP-dependent DNA helicase RecQ [Saccharomonospora viridis DSM
43017]
Length = 607
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 14/177 (7%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ KV + D+L + G+G D S W+ + QL++ G L ++ Y T+ ++ + L
Sbjct: 442 TPKVTQHRHDELSVFGVGSDLSEVEWRGVVRQLLAQGLLA--VEGDYGTLVTTEASDEVL 499
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R M + S+ KS+A E EA L+ L
Sbjct: 500 YRGR-----------TVRMRRDPNRLAVRSSRATAKSAAAPSVELDGEA-AALFEQLRAW 547
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R AR G Y + D T+++IA RP+T L+ + GV ++ + +GD +L+ I
Sbjct: 548 RATTARSQGVPAYVVFHDATLRQIASLRPATLGELSTVSGVGENKLAKYGDRILEII 604
>gi|388256112|ref|ZP_10133293.1| ATP-dependent DNA helicase RecQ [Cellvibrio sp. BR]
gi|387939812|gb|EIK46362.1| ATP-dependent DNA helicase RecQ [Cellvibrio sp. BR]
Length = 601
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K++ KL +G+GK S++ WK + QL++ G L + D + + +++ + +L
Sbjct: 437 NEKILSFDHHKLTTYGIGKHLSADEWKAIFRQLVARGLL-DVNSDGFGGLVLNESCRAFL 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R D + L + A +N+G +G D L++ L
Sbjct: 496 ---RGDEKISLRRD-----IKAANSSPRRANLG----------QGIEAEDQGLWNALRSC 537
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK+LA G PY + D T++++ RP T +L +I GV + + G+ L IR
Sbjct: 538 RKRLAEEQGVPPYVIFHDATLREMLEFRPLTAEQLRSITGVGESKLKRFGEEFLAVIR 595
>gi|258647142|ref|ZP_05734611.1| ATP-dependent DNA helicase RecQ [Prevotella tannerae ATCC 51259]
gi|260853106|gb|EEX72975.1| ATP-dependent DNA helicase RecQ [Prevotella tannerae ATCC 51259]
Length = 726
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 19/179 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+++V+ + ++L G G+++S W + Q + GYL++ + D Y ++V+ +G+ +L
Sbjct: 442 TEEVLAHKHEQLEEFGCGENYSEKTWNAVIRQGLIAGYLSKEV-DNYGILNVTDKGEHFL 500
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
H + + E DA E E ++N + +LY ML +
Sbjct: 501 S-----HPVSFKIVEDHEYKDAAESEP-------------MQNGAETTVAPELYEMLKDL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
RKK ++ PY + D +++ +A P T L NI GV +GD Q I+
Sbjct: 543 RKKKSKELNLPPYIIFQDPSLQAMATVFPQTTDELQNIPGVGSGKAKRYGDEFCQLIKQ 601
>gi|424882582|ref|ZP_18306214.1| ATP-dependent DNA helicase RecQ [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392518945|gb|EIW43677.1| ATP-dependent DNA helicase RecQ [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 622
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 16/164 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G GKD + W+++ QL++ G L + Y + + + + R
Sbjct: 469 VFGAGKDIPARVWQSVLRQLLAMG-LIRVDHEAYGALKLEPEARAVFKHERQ-------- 519
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
F + A E T + G+ KS G S AD L+ L ER +A+ G PY
Sbjct: 520 VFFRKDRPASERRTKKAERGERKS-------GLSGADGSLFEALRAERMAIAKSLGVPPY 572
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D T+ A +P + L I GV Q + +GD L+ I
Sbjct: 573 VVFPDTTLIAFATEKPRNRKELLAISGVGQAKLERYGDAFLEII 616
>gi|357411821|ref|YP_004923557.1| ATP-dependent DNA helicase RecQ [Streptomyces flavogriseus ATCC
33331]
gi|320009190|gb|ADW04040.1| ATP-dependent DNA helicase RecQ [Streptomyces flavogriseus ATCC
33331]
Length = 669
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 88/181 (48%), Gaps = 13/181 (7%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ KV+ D+L + G+G++ + W+ + QL++ G L ++ Y T+ +++ L
Sbjct: 447 TAKVIQFDHDQLSVFGIGEELAEAEWRGVVRQLLAQGLLA--VEGEYGTLVLTEASGTVL 504
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
G R ++L + + T SS+ G+ +S A E +EA + ++ L
Sbjct: 505 GRERE-----VMLR-----KEPKRPTTRSSSGGERRSKAAATAELPAEA-VPVFEALRAW 553
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R A+ G Y + D T+++IA RP + A L + G+ + + T+G+ +L+ + L
Sbjct: 554 RGAQAKELGLPAYVIFHDATLREIAALRPGSLAELGGVSGLGEKKLATYGEGVLEVLAGL 613
Query: 181 S 181
Sbjct: 614 G 614
>gi|170756934|ref|YP_001780621.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum B1 str.
Okra]
gi|429245970|ref|ZP_19209332.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum CFSAN001628]
gi|169122146|gb|ACA45982.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum B1 str.
Okra]
gi|428757006|gb|EKX79516.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum CFSAN001628]
Length = 709
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 98/206 (47%), Gaps = 19/206 (9%)
Query: 108 EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVI 167
+AD +L+ +L + RK +++ P+ + D T+K+++ P+ + L I G+ +
Sbjct: 515 KADNELFEILKQLRKAISQEESVPPFMIFPDATLKELSEYMPTKEEDLLKIKGIGERKAK 574
Query: 168 THGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDG 227
+G+ ++ I + + ++ + K ++ K Y +K +G
Sbjct: 575 VYGERFIEAITEYMNENGIDINNMDNYEGTKSNK-----ESKIKTHVLSYNLYK----EG 625
Query: 228 LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISK 287
+I++I+ +K T+ ++L + +SEG +++ ++ + I + I K
Sbjct: 626 KTIKEIS----EERNLKAITIQEHLFKCLSEGMEVDLDNFINK-----DYERLILDTIKK 676
Query: 288 VGCKDKLKPIKNELPDDITYAHIKAC 313
VG KLKP+K+ELP ++ Y IK+
Sbjct: 677 VGGT-KLKPVKDELPPEVDYMCIKSV 701
>gi|340621987|ref|YP_004740439.1| ATP-dependent DNA helicase recQ [Capnocytophaga canimorsus Cc5]
gi|339902253|gb|AEK23332.1| ATP-dependent DNA helicase recQ [Capnocytophaga canimorsus Cc5]
Length = 729
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 21/170 (12%)
Query: 8 QFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDH 67
+ D+ G+G D +W L Q++ G + + I + Y + ++ +GK ++
Sbjct: 454 KIDEQDFFGIGNDKDDRYWMALLRQVMVNGLIRKDI-ETYGIMFLTDKGKDFI------- 505
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ P+ + V EE + I + G + AD L ML + RKK+A+V
Sbjct: 506 KHPVSFMMTEDHVYEEEPDEIGQSGGGV-------------ADEVLLVMLKDLRKKVAKV 552
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
G P+ + D +++ +AL P T + + N+ GV + +G ++ I
Sbjct: 553 KGVPPFVVFQDPSLEDMALKYPITISEMTNVHGVGEGKAKKYGKEFVELI 602
>gi|269956877|ref|YP_003326666.1| ATP-dependent DNA helicase RecQ [Xylanimonas cellulosilytica DSM
15894]
gi|269305558|gb|ACZ31108.1| ATP-dependent DNA helicase RecQ [Xylanimonas cellulosilytica DSM
15894]
Length = 621
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 18/171 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV + L + G+G D + W+ + QL++ G LT ++ V+ T+ +++ + L
Sbjct: 457 TEKVRRFRHQDLTVFGVGTDLAEPEWRAVVRQLLAQGLLT--VEGVHGTLVLTEASGEVL 514
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R E+ E E + + +A +E+ +EAD L+ L
Sbjct: 515 AGRR-------------EVRMRHEPER-PARTARARKTAVVED--LAEADTALFEALRTW 558
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGD 171
R A+ G Y + GD T++ IA ARP T LA + GV + + +G+
Sbjct: 559 RAGEAKAQGKPAYIVFGDATLRGIATARPGTPGELAAVSGVGETKLERYGE 609
>gi|194016786|ref|ZP_03055399.1| ATP-dependent DNA helicase RecQ [Bacillus pumilus ATCC 7061]
gi|194011392|gb|EDW20961.1| ATP-dependent DNA helicase RecQ [Bacillus pumilus ATCC 7061]
Length = 593
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 31/183 (16%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV++ FD+L + L K HS+ LI+ YL + + Y T+ V+ +GK+ L
Sbjct: 439 NKKVLELGFDRLPTYALMKQHSAQQISDFIEFLITEEYLHMS-EGAYPTLKVTHKGKKVL 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
++ + K+ A EN+ L+ L
Sbjct: 498 VGQEAVYKKQAI-----------------------KAEAIQENDV-------LFERLRSL 527
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R KLAR G P+ + DQT+K+++ P T L I G+ +GD L+ IR
Sbjct: 528 RMKLAREQGVPPFVVFSDQTLKEMSAVEPQTDDELLQIKGIGAQKREKYGDVFLEEIRLF 587
Query: 181 SQK 183
+K
Sbjct: 588 IEK 590
>gi|390954980|ref|YP_006418738.1| RecQ familyATP-dependent DNA helicase [Aequorivita sublithincola
DSM 14238]
gi|390420966|gb|AFL81723.1| ATP-dependent DNA helicase, RecQ family [Aequorivita sublithincola
DSM 14238]
Length = 730
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 18/164 (10%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
G G + S +W L QL+ G+L + I + Y + ++ GK+++ S ++T
Sbjct: 460 GTGANQDSAYWMALLRQLLVAGFLKKDI-ETYGVIHLTDAGKKFIKSP-----TSFMMTE 513
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
+ DA + +S+N +G D+ L+ +L E KK+A P+ +
Sbjct: 514 DHSFKDANDDVIVSAN------------KGGEVLDVNLFKILKAELKKVAHDLDLPPFVI 561
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
+ +++ +AL P T L+N+ GV + +G L+ I++
Sbjct: 562 FQEPSLEDMALKYPVTMEELSNVHGVGEGKAKKYGKSFLKLIQN 605
>gi|373858520|ref|ZP_09601256.1| ATP-dependent DNA helicase RecQ [Bacillus sp. 1NLA3E]
gi|372451660|gb|EHP25135.1| ATP-dependent DNA helicase RecQ [Bacillus sp. 1NLA3E]
Length = 714
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 101 LENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDG 160
++ + S+AD L+ L RK +A P+ + D +++ + L P + N+ G
Sbjct: 505 IQAKTISKAD-PLFEELRLLRKSIADHEKVPPFVIFSDTSLQDMCLRLPKSNEEFLNVKG 563
Query: 161 VNQHLVITHGDHLLQTIRHL--SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYE 218
V H + +G +Q IR S ++ D E K + + P+
Sbjct: 564 VGAHKLEKYGLEFIQAIRIFCESNPHRITEDKTDSEVEKGKTKKREPKDPDGR--PSHLV 621
Query: 219 AWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIF 278
++ ++ G +I +I+ S T+ +LL + EG INW E L +
Sbjct: 622 SYDLY-SSGATISQISKERNLSVI----TIQSHLLRSAEEGQFINW-----EKELPSDCR 671
Query: 279 SAIQEAISKVGCKDKLKPIKNELPDDITYAHIKACLVMEN 318
I+ AI++ G DKLKPIK LP +I+Y I+A + N
Sbjct: 672 PLIEAAIAEAGT-DKLKPIKELLPAEISYFMIQAFFFLRN 710
>gi|354557592|ref|ZP_08976850.1| ATP-dependent DNA helicase RecQ [Desulfitobacterium metallireducens
DSM 15288]
gi|353550386|gb|EHC19823.1| ATP-dependent DNA helicase RecQ [Desulfitobacterium metallireducens
DSM 15288]
Length = 726
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 142/325 (43%), Gaps = 53/325 (16%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV++ QFD+L +G+ D S K L++ YL + + Y V +
Sbjct: 439 NKKVLELQFDRLSTYGIMSDKSLQEIKDRINYLMTENYLRLSTGE-YPIVKL-------- 489
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+P + GE+ +++ +S V K+S L++ L+ L
Sbjct: 490 -------EPKSIPVLKGEVKVSQK---LSRRVE--KASTDLQS---------LFERLRLL 528
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-H 179
R LA PY + D T++++A P A I GV + + +G ++ I +
Sbjct: 529 RHNLASRENLPPYMVFSDSTLREMAENLPIDLAGFIRIGGVGEKKLEKYGAEFIEEISAY 588
Query: 180 LSQKLNLSLDGKVGEHTA----------FTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLS 229
L +K ++ D H + L V + K+ P+ + ++ + G +
Sbjct: 589 LLEKQAMAGDQVQELHDVVQQTNSNQERISHNLEPVTHPSVKI-PSYIQTLELLQQ-GKT 646
Query: 230 IQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVG 289
+++IA R I TV D+L+ EG I W EV + + I EAI++VG
Sbjct: 647 LEEIAVL--RKLTIS--TVQDHLIRCHEEGHTIPW-----EVLIPPDQEELILEAINQVG 697
Query: 290 CKDKLKPIKNELPDDITYAHIKACL 314
+DKL+PIK+ LP ++ + IKA L
Sbjct: 698 -RDKLRPIKDTLPKEVDWLAIKAVL 721
>gi|145640806|ref|ZP_01796388.1| frataxin-like protein [Haemophilus influenzae R3021]
gi|145274320|gb|EDK14184.1| frataxin-like protein [Haemophilus influenzae 22.4-21]
Length = 619
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q KL ++G+GKD S W+++ QLI G++ + I ++ T+ +++ K L
Sbjct: 447 NQKIIERQHHKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVISELNPTLRLTESAKVIL 506
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P M I+ N + +G + D L+ L
Sbjct: 507 KGEEP---------LELAMPRISSISKIAHNP---------QRQGVANYDKDLFARLRFL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P + + I+GV
Sbjct: 549 RKQIADKENIPPYIVFNDATLQEMAQYMPISNIEMLQINGV 589
>gi|387132182|ref|YP_006298154.1| ATP-dependent DNA helicase RecQ [Prevotella intermedia 17]
gi|386375030|gb|AFJ09244.1| ATP-dependent DNA helicase RecQ [Prevotella intermedia 17]
Length = 727
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
GLG+ W + Q + G+L + +++ Y + ++ GK++L + + ++
Sbjct: 459 GLGEKEDPKVWNPVIRQAMLDGFLKKDVEN-YGLLKLTAAGKRFLKNPQS-----FMIVM 512
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
+ E E E++ VG G S AD +LY ML + RK LAR G Y +
Sbjct: 513 DKEFKTDEIDESM---VG-----------GTSVADPELYAMLKDLRKHLARKLGIPAYVI 558
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNL 186
D ++ ++A+ P T+ L NI GV +G+ + I+ ++ N+
Sbjct: 559 FQDPSLDQMAMMYPITEQELQNIQGVGVGKAKRYGEEFCKLIKQYCKEKNI 609
>gi|297538336|ref|YP_003674105.1| ATP-dependent DNA helicase RecQ [Methylotenera versatilis 301]
gi|297257683|gb|ADI29528.1| ATP-dependent DNA helicase RecQ [Methylotenera versatilis 301]
Length = 609
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 17/173 (9%)
Query: 8 QFD--KLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARP 65
QF+ L G+GK + + W ++ QL++ GYL I + Y + +++ SA+P
Sbjct: 448 QFNHHSLSTFGIGKGLTQSQWSSVYRQLVAGGYLESDI-EAYGGLKLAE-------SAKP 499
Query: 66 DHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSE-ADMQLYHMLLEERKKL 124
+L E+ ++ E ++ + EG+ E AD L+H L +R +L
Sbjct: 500 ------VLKGEAEVWLRQDVEVVAIRKVSKAERGSRAKEGYEEVADDPLWHALKAKRMEL 553
Query: 125 ARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
A+ G PY + D T+ +I +P + ++ I GV Q + +GD L+ +
Sbjct: 554 AKEQGVPPYVIFHDSTLLEILNQKPGSLTEMSQITGVGQAKLERYGDAFLEVL 606
>gi|428213965|ref|YP_007087109.1| ATP-dependent DNA helicase RecQ [Oscillatoria acuminata PCC 6304]
gi|428002346|gb|AFY83189.1| ATP-dependent DNA helicase RecQ [Oscillatoria acuminata PCC 6304]
Length = 836
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 22/190 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV+ + L +G+G D +++ WK L LI G + ET D Y + +++
Sbjct: 450 NQKVLKYGHETLSTYGIGLDKTADEWKMLGRSLIHQGLVEETT-DGYSVLKLNE------ 502
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
GS E++ + I+ + + T + +E +M L +L
Sbjct: 503 GS--------------WEVMRKQRQVVIAVPKAPVNTEMTDRDRKKAEVEM-LLDLLRSL 547
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK++A APY + D T+K +A RP T N+ GV + V +GD + IR
Sbjct: 548 RKEIADEQSVAPYMVFADSTLKLMAQQRPQTLDEFGNLSGVVGYKVDQYGDRFVTEIREY 607
Query: 181 SQKLNLSLDG 190
+ LS G
Sbjct: 608 CRTYGLSSVG 617
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 25/213 (11%)
Query: 103 NEGFSEADM---QLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANID 159
N G E D +L+ L R+++A G P+ + D T+K IA RP + A L I
Sbjct: 622 NNGTGELDAAGEELFEQLRVLRREIANERGVPPFVVFPDSTLKAIAQQRPQSLAALKQIS 681
Query: 160 GVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEA 219
GV ++ + G + I+ Q+ L + E T V+ + K P+ +
Sbjct: 682 GVGEYKLAEFGSQFISEIQAYCQQRGL----QESEPT-------VIPESVVKSDPSLTQI 730
Query: 220 WKM-WHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIF 278
+ H++G+S+ +IA +KE TV +L+E + ++ RL V I
Sbjct: 731 ITLESHQEGMSVAEIAA----KRNLKETTVESHLIELLEMDQPVDIHRLVP-VQRQQVII 785
Query: 279 SAIQEAISKVGCKDKLKPIKNELPDDITYAHIK 311
A+Q S + LKP+ L + +Y ++
Sbjct: 786 QALQLLGSNL-----LKPVYEHLGEKYSYNELR 813
>gi|400975633|ref|ZP_10802864.1| ATP-dependent DNA helicase [Salinibacterium sp. PAMC 21357]
Length = 691
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 20/180 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ +V + D L G+G D S W+++ QL++ L T++ Y T++++ + L
Sbjct: 440 TPRVTQQRHDDLATFGIGSDVSEQDWRSVVRQLLAQSLL--TVQGEYGTLAITPESASVL 497
Query: 61 GSARP---DHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
R + P +G A + + ++ DL +SAT L+ L
Sbjct: 498 SGDRTVKLRKEAPRKARGSGASGGAAKRKVMT----DLPASAT-----------DLFENL 542
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R ++AR G Y + D T++ IA+ +P + A L+ I GV + + T+G +L +
Sbjct: 543 RTWRSEIARENGVPAYVVFADATLRGIAVTKPESLAELSEISGVGEKKLETYGAAVLTVV 602
>gi|388455906|ref|ZP_10138201.1| ATP-dependent DNA helicase RecQ [Fluoribacter dumoffii Tex-KL]
Length = 607
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 23/184 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S K+ D+L G+GK+ S+++WK LA+QLI + + + + + ++
Sbjct: 444 SDKIKQLGHDQLSTFGIGKEKSAHYWKQLAWQLIHKEFCVQDM-SYFNVLKLT------- 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSS--ATLENEGFSEADMQLYHMLL 118
P P ++ EE +++ D K+S T E + A+ L+ +L
Sbjct: 496 ----PKAIP---------ILKGEEKISLTLFTSDPKNSKKKTKERKTTQAANSPLFELLR 542
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
R+KLA P+ + D T++ +A A+P +L + GV QH + +G+ L+T+
Sbjct: 543 ALRRKLADEENKPPFMIFSDATLQAMAEAKPENLDQLLAVPGVGQHKLTHYGEQFLKTLN 602
Query: 179 HLSQ 182
S+
Sbjct: 603 EYSE 606
>gi|297570067|ref|YP_003691411.1| ATP-dependent DNA helicase RecQ [Desulfurivibrio alkaliphilus AHT2]
gi|296925982|gb|ADH86792.1| ATP-dependent DNA helicase RecQ [Desulfurivibrio alkaliphilus AHT2]
Length = 609
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQ------ 54
++++++ +L +G+G D ++W+ L LI GY+ + + + + + + Q
Sbjct: 436 NQRLLELGHHRLSTYGIGADRDKDYWQALLRHLIHLGYVEQDVGN-FSVLKLHQSSRPLL 494
Query: 55 QGKQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLY 114
+G+ L RP +P AE T+++ G A G + AD +++
Sbjct: 495 RGEATLQMGRPRTKP---------APTAEAGPTVAA--GGKSGRAGKGPAGLAAADREIF 543
Query: 115 HMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLL 174
L RK++A G P+ + D + +A +P I GV Q+ + +G+ L
Sbjct: 544 EQLRRLRKEIADQDGVPPFVVFSDAALVAMATQQPKDDKEFLQIHGVGQYKLERYGERFL 603
Query: 175 QTI 177
I
Sbjct: 604 NAI 606
>gi|374597031|ref|ZP_09670035.1| ATP-dependent DNA helicase, RecQ family [Gillisia limnaea DSM
15749]
gi|373871670|gb|EHQ03668.1| ATP-dependent DNA helicase, RecQ family [Gillisia limnaea DSM
15749]
Length = 732
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 18/164 (10%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
L G G D S +W L Q++ G L + I + Y TV ++Q+G+ ++ P +
Sbjct: 460 LFGKGSDKDSKYWMALIRQVLVAGMLRKDI-ETYGTVKLTQKGEDFI------KNPSSFM 512
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
+ D T + EG S D +L ML + RKK+A+ P+
Sbjct: 513 MTEDHVFDNTTQAV----------PVTSKGEG-SGVDQKLVKMLKDLRKKVAKKRNVPPF 561
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D +++ +AL P T L+NI GV + G+ + I
Sbjct: 562 VVFQDFSLEDMALKYPITLEELSNIHGVGEGKAKKFGNEFIDFI 605
>gi|86358555|ref|YP_470447.1| ATP-dependent DNA helicase [Rhizobium etli CFN 42]
gi|86282657|gb|ABC91720.1| ATP-dependent DNA helicase protein [Rhizobium etli CFN 42]
Length = 622
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 16/164 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G GKD + W+++ QL++ G L + Y + + + + S R
Sbjct: 469 VFGAGKDIPARTWQSVYRQLLAMG-LIRIDHEAYGALKLEPEARAVFKSERQ-------- 519
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
F + A E T + + KS+ S AD L+ L ER +A+ G PY
Sbjct: 520 VFFRKDRPASEPRTKKAERSERKSA-------LSGADGSLFEALRAERMAIAKSLGVPPY 572
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D T+ A RP ++ L I GV Q + +GD L+ I
Sbjct: 573 VVFPDTTLIAFATERPRSRKELLGISGVGQAKLDRYGDAFLEII 616
>gi|117621322|ref|YP_858553.1| ATP-dependent DNA helicase RecQ [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562729|gb|ABK39677.1| ATP-dependent DNA helicase RecQ [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 611
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 24/180 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL +G+GKD S +W ++ QLI G LT+ I R + + Q
Sbjct: 447 NQRIKDHGHDKLSTYGIGKDQSHEYWMSVIRQLIHKGLLTQNIT---RNLVL-----QLT 498
Query: 61 GSARPDHQPPLLLTFNGEM---VDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
+ARP GE+ + + ISS K + L+N + D +L+ L
Sbjct: 499 EAARP--------VLRGEVKLDLAVPRLQPISSR--KEKRNGLLDNANY---DKRLFKEL 545
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
RK++A PY + D T+ ++A P T+A + ++GV + G+ + I
Sbjct: 546 RALRKQIAEDEEVPPYVVFNDATLVEMAQLMPMTEAEMLAVNGVGHRKLERFGEAFMDLI 605
>gi|334706300|ref|ZP_08522166.1| ATP-dependent DNA helicase RecQ [Aeromonas caviae Ae398]
Length = 611
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 24/180 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL +G+GKD S +W ++ QLI G LT+ I R + + Q
Sbjct: 447 NQRIKDHGHDKLSTYGIGKDQSHEYWMSVIRQLIHKGLLTQNIT---RNLVL-----QLT 498
Query: 61 GSARPDHQPPLLLTFNGEM---VDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
+ARP GEM + + ISS K + L+N + D +L+ L
Sbjct: 499 EAARP--------VLRGEMKLELAVPRLQPISSR--KEKRNGLLDNANY---DKRLFKEL 545
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
RK++A PY + D T+ ++A P T+ + ++GV + G+ + I
Sbjct: 546 RALRKQIAEDEEVPPYVVFNDATLVEMAQLMPMTEEEMLAVNGVGHRKLERFGEAFMDLI 605
>gi|256820777|ref|YP_003142056.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea DSM 7271]
gi|429746398|ref|ZP_19279750.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 380
str. F0488]
gi|429756068|ref|ZP_19288682.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 324
str. F0483]
gi|256582360|gb|ACU93495.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea DSM 7271]
gi|429166284|gb|EKY08277.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 380
str. F0488]
gi|429172170|gb|EKY13749.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 324
str. F0483]
Length = 729
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 78/170 (45%), Gaps = 21/170 (12%)
Query: 8 QFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDH 67
+ D+ G+GK+ +W L Q++ G + + I + Y + ++ +GK++L
Sbjct: 454 RIDEQEFFGIGKEKDDAYWMALLRQVMVNGLIRKDI-ETYGVMFITDKGKEFLKDV---- 508
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
P ++T E+H + D+ S+ + AD L ML + RKK+A+
Sbjct: 509 -PSFMMT--------EDH-SYEEEPEDINSANAV------AADPVLLEMLKDLRKKVAKQ 552
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
G P+ + D +++ +AL P T L N+ G+ + +G ++ I
Sbjct: 553 KGVPPFVVFQDPSLEDMALKYPITIQELTNVHGIGEGKAKKYGSEFVKLI 602
>gi|365856466|ref|ZP_09396483.1| ATP-dependent DNA helicase RecQ [Acetobacteraceae bacterium
AT-5844]
gi|363718002|gb|EHM01358.1| ATP-dependent DNA helicase RecQ [Acetobacteraceae bacterium
AT-5844]
Length = 602
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 28/177 (15%)
Query: 7 AQF--DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSAR 64
AQF D L G+G+D + W+ +A QL++ G L +++ V +AR
Sbjct: 445 AQFGHDALPTFGVGRDLPESAWRGVARQLVAQGALDVAVENHGELVPTE--------AAR 496
Query: 65 P---DHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
P QP +L EE T+ G L++ A++E + +D + + L E R
Sbjct: 497 PILKGEQPVML---------REELVTVPPR-GSLRTRASVE----APSDPR-FAALREWR 541
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
K+ A G Y + D+T+ +IA +P + A+L NI GV + +G +L+ +R
Sbjct: 542 KRTALAQGVPAYVIFQDRTLAEIASEQPDSLAQLGNIPGVGNTKLERYGQDVLRVLR 598
>gi|444334457|ref|ZP_21149999.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|443550367|gb|ELT58702.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 472
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 82/178 (46%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ + + ++L ++G+GK+H + +W+++ QL+ G + + I + T+ +++ K
Sbjct: 305 NQKIREQRHEQLSVYGIGKEHGTEYWQSVLRQLVHLGLVRQIIGEYGNTLQLTENAK--- 361
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GE E E + + + ++A D L+ L
Sbjct: 362 ---------PIL---RGE----EPLELATPRLSSIVTTAMTPKSTVGSYDKDLFARLRFL 405
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A +P + + I+GV + G L IR
Sbjct: 406 RKQIADKENIPPYIVFNDATLQEMAQYQPVSNIEMLQINGVGAIKLERFGQAFLALIR 463
>gi|453331238|dbj|GAC86817.1| ATP-dependent DNA helicase RecQ [Gluconobacter thailandicus NBRC
3255]
Length = 616
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 17/176 (9%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
++ L + G+GKD + NWW+ + QLI+ G I+ S++ Q + ARP
Sbjct: 456 YNHLSVFGIGKDQTENWWRAVVRQLIARG----AIRTHGEHGSLALQAE----IARP--- 504
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
G+ +T S + SS ENE S + ++ L + R AR
Sbjct: 505 -----ILRGDEKILLRQDTRQSLIARTPSS-NQENESLSPEEKTVFDALRQWRLSEAREQ 558
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKL 184
PY + D ++ IA P + LA+I GV + +G+ +L I+ +S +
Sbjct: 559 EIPPYVIFHDSVLRDIAREHPVSHQELASIKGVGTSKLDRYGESVLAVIKEISATI 614
>gi|110636721|ref|YP_676928.1| ATP-dependent DNA helicase RecQ [Cytophaga hutchinsonii ATCC 33406]
gi|110279402|gb|ABG57588.1| ATP-dependent DNA helicase RecQ [Cytophaga hutchinsonii ATCC 33406]
Length = 725
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 12 LLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPL 71
L ++G G S ++W ++ Q + G L++ I D Y VS+S++G+ +L + P
Sbjct: 451 LPVYGKGDYESLSFWNSIFRQSLLIGLLSKDI-DNYSIVSISEKGEAFLKN-------PT 502
Query: 72 LLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTA 131
L++F +++H V + AT +N F E +L+++L RK++A+
Sbjct: 503 LISF------SKDHNFDKEEVAEEDEIATSKN-AFDE---ELFNILKALRKQVAKERNVP 552
Query: 132 PYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D +++++A P L+NI GV + G ++ I
Sbjct: 553 PYVVFQDPSLQEMATVYPVDTEELSNIVGVGKGKATKFGKPFIEQI 598
>gi|420149707|ref|ZP_14656877.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|394753188|gb|EJF36768.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 335
str. F0486]
Length = 732
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 78/170 (45%), Gaps = 21/170 (12%)
Query: 8 QFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDH 67
+ D+ G+GK+ +W L Q++ G + + I + Y + ++ +GK++L
Sbjct: 457 RIDEQEFFGIGKEKDDAYWMALLRQVMVNGLIRKDI-ETYGVMFITDKGKEFLKDV---- 511
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
P ++T E+H + D+ S+ + AD L ML + RKK+A+
Sbjct: 512 -PSFMMT--------EDH-SYEEEPEDINSANAV------AADPVLLEMLKDLRKKVAKQ 555
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
G P+ + D +++ +AL P T L N+ G+ + +G ++ I
Sbjct: 556 KGVPPFVVFQDPSLEDMALKYPITIQELTNVHGIGEGKAKKYGSEFVKLI 605
>gi|393779596|ref|ZP_10367834.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|392609916|gb|EIW92711.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 412
str. F0487]
Length = 727
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 78/170 (45%), Gaps = 21/170 (12%)
Query: 8 QFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDH 67
+ D+ G+GK+ +W L Q++ G + + I + Y + ++ +GK++L
Sbjct: 452 RIDEQEFFGIGKEKDDAYWMALLRQVMVNGLIRKDI-ETYGVMFITDKGKEFLKDV---- 506
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
P ++T E+H + D+ S+ + AD L ML + RKK+A+
Sbjct: 507 -PSFMMT--------EDH-SYEEEPEDINSANAV------AADPVLLEMLKDLRKKVAKQ 550
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
G P+ + D +++ +AL P T L N+ G+ + +G ++ I
Sbjct: 551 KGVPPFVVFQDPSLEDMALKYPITIQELTNVHGIGEGKAKKYGSEFVKLI 600
>gi|150016697|ref|YP_001308951.1| ATP-dependent DNA helicase RecQ [Clostridium beijerinckii NCIMB
8052]
gi|149903162|gb|ABR33995.1| ATP-dependent DNA helicase RecQ [Clostridium beijerinckii NCIMB
8052]
Length = 816
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 35/216 (16%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV+ F++L +GL K++S+ K LIS+GY+ ++ Y +S++ + ++ L
Sbjct: 438 NKKVIQFHFNELSTYGLMKEYSAEDLKNFINTLISHGYIN-VVEGTYPVLSLNDRSRKVL 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S E V +E ++ A+ ENE L+ +L
Sbjct: 497 TSQ--------------EKVQLKEFR--------VEKKASEENE--------LFEILRNL 526
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R++LA+ PY + GD T+K++ + P +K + + GV + +G IR+
Sbjct: 527 RQELAKENNVPPYIIFGDVTLKEMTVNYPISKYEMLKVSGVGEVKYNKYGKVFEDVIRNF 586
Query: 181 SQKLNLSL----DGKVGEHTAFTRKLHVVVNTRTKL 212
++ +++ +G + E + + V +T L
Sbjct: 587 VEEHEIAIPDHDEGLLDEQKSINKDEESRVEVKTDL 622
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 25/213 (11%)
Query: 108 EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVI 167
+ D++LY L RK+ A+ P A+ T+K+I+ P + L +I G+ +
Sbjct: 619 KTDLELYERLDNARKEFAKEERALPQAILTMNTLKEISGRCPGSLDELKDITGMGPKKIS 678
Query: 168 THGDHLLQTIR-HLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHED 226
+G+ ++ + +LS+ D KV E T R+ V+++ T+ + M ++
Sbjct: 679 LYGEKIINVVNEYLSEN-----DRKV-EWTERKRR-KVIIDGETRENDQI--SIDMLKQN 729
Query: 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAIS 286
++I +++ S V DY+ E F IN +E ++ E +
Sbjct: 730 -ITIHEVSQKLEISISTILGYVTDYIKEFGENAFHINL----------EEFYNKEDEKLI 778
Query: 287 KVGCK----DKLKPIKNELPDDITYAHIKACLV 315
C+ DK+ +K ELP I Y I+A ++
Sbjct: 779 IGACQKHGYDKINVLKKELPSHIKYESIRAVIL 811
>gi|411116551|ref|ZP_11389038.1| ATP-dependent DNA helicase RecQ [Oscillatoriales cyanobacterium
JSC-12]
gi|410712654|gb|EKQ70155.1| ATP-dependent DNA helicase RecQ [Oscillatoriales cyanobacterium
JSC-12]
Length = 741
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 21/189 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+++++ DKL +G+GKDHS++ W+ L LI G + ET D Y + ++Q + L
Sbjct: 454 NQRLLQNGHDKLSTYGIGKDHSADEWRMLGRSLIHQGLVEET-SDGYSVLRLNQMSWEVL 512
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R + + + ++ IS+N S+ +L+ L +
Sbjct: 513 RKQR-----TVAIAVPPKPTATSSNQPISTN---------------SQIVTELFQRLQKL 552
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA PY + + +++++A +P A I GV + +G+ L IR
Sbjct: 553 RKQLADEQSVPPYVIFQNTSLQEMAERQPLNSRDFAAISGVGSRKLSQYGEVFLAEIRAF 612
Query: 181 SQKLNLSLD 189
+ L L+
Sbjct: 613 RVEKGLPLE 621
>gi|416062304|ref|ZP_11581397.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|416069431|ref|ZP_11583273.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|347997266|gb|EGY38280.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|348000045|gb|EGY40845.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
Length = 629
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 82/178 (46%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ + + ++L ++G+GK+H + +W+++ QL+ G + + I + T+ +++ K
Sbjct: 462 NQKIREQRHEQLSVYGIGKEHGTEYWQSVLRQLVHLGLVRQIIGEYGNTLQLTENAK--- 518
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GE E E + + + ++A D L+ L
Sbjct: 519 ---------PIL---RGE----EPLELATPRLSSIVTTAMTPKSTVGSYDKDLFARLRFL 562
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A +P + + I+GV + G L IR
Sbjct: 563 RKQIADKENIPPYIVFNDATLQEMAQYQPVSNIEMLQINGVGAIKLERFGQAFLALIR 620
>gi|440228947|ref|YP_007342740.1| ATP-dependent DNA helicase RecQ [Serratia marcescens FGI94]
gi|440050652|gb|AGB80555.1| ATP-dependent DNA helicase RecQ [Serratia marcescens FGI94]
Length = 614
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 79/179 (44%), Gaps = 21/179 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+G+DH++ W ++ QLI G++T+ + Q
Sbjct: 448 NQRIREFGHDKLPVYGIGRDHTTEHWISVLRQLIHLGFITQNV--------AMHSALQLT 499
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGF-SEADMQLYHMLLE 119
+ARP GE+ E + + LK + + D +L+ L +
Sbjct: 500 EAARP--------VLRGEV----ELQLAVPRIQSLKPRGGSAQKSYGGNYDRKLFAKLRK 547
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P+ + L +++GV Q + G + IR
Sbjct: 548 LRKSIADEENIPPYVVFNDSTLLEMAEQMPTRASELLSVNGVGQRKLERFGTPFMAMIR 606
>gi|375097299|ref|ZP_09743564.1| ATP-dependent DNA helicase RecQ [Saccharomonospora marina XMU15]
gi|374658032|gb|EHR52865.1| ATP-dependent DNA helicase RecQ [Saccharomonospora marina XMU15]
Length = 601
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 23/179 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ K+V D L + G+G D + W+ + QL++ G L +K Y T+ ++ + L
Sbjct: 442 TAKIVQHGHDSLSVFGVGTDLDESQWRAVVRQLLAAGLLA--VKGEYGTLVTTEASDEVL 499
Query: 61 GSARPDHQPPLLLTFNGEMVD--AEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLL 118
+ G V AE + S G T SE D ++ L
Sbjct: 500 --------------YRGRTVRLRAEPERQVRSG-GKRADKVT----ALSEDDAPVFERLR 540
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R A+ G Y + D T+++IA RP++ L ++ GV Q + +G+H+L+ I
Sbjct: 541 AWRAATAKEQGVPAYVIFHDATLREIATRRPASLPELGSVSGVGQSKLSKYGEHVLRAI 599
>gi|332291025|ref|YP_004429634.1| RecQ familyATP-dependent DNA helicase [Krokinobacter sp. 4H-3-7-5]
gi|332169111|gb|AEE18366.1| ATP-dependent DNA helicase, RecQ family [Krokinobacter sp.
4H-3-7-5]
Length = 732
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 21/202 (10%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
G+G D +W L Q + GY+ + I + Y V ++ QG Y+ P +
Sbjct: 460 FFGIGHDQKKEYWFALIRQALVAGYIKKDI-ETYGVVKMTPQGLDYI------ENPVSFM 512
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
+ + DA I S + + AD +L ML + RKK+A+ P+
Sbjct: 513 MTDDHVFDANTDNAIVS-----------AQKAGAGADKKLLEMLKDLRKKVAKKLDVPPF 561
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI-RHLSQKLNLSLDGKV 192
+ D +++ +++ P + L N+ GV +G + I R++S L D V
Sbjct: 562 VVFQDPSLEDMSIKYPVSVEELGNVHGVGDGKAKKYGKEFVALIDRYVSDNEILRPDDLV 621
Query: 193 GEHTAFTR--KLHVVVNTRTKL 212
+ T KL+++ N KL
Sbjct: 622 VKSTGANSGLKLYIIQNVDRKL 643
>gi|427400403|ref|ZP_18891641.1| ATP-dependent DNA helicase RecQ [Massilia timonae CCUG 45783]
gi|425720677|gb|EKU83596.1| ATP-dependent DNA helicase RecQ [Massilia timonae CCUG 45783]
Length = 610
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 31/180 (17%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTE--------TIKDVYRTVSVSQQGKQYLG 61
DKL ++G+G D S W+ + Q I+ G +T + D R V +Q Q
Sbjct: 454 DKLTVYGVGADRSEQEWRAILRQAIALGLVTVDHDAFSSLKLTDAARPVLKGEQKVQLRQ 513
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
A+P V A+ T S ++ E S + ++ L R
Sbjct: 514 YAKP--------------VKAKRPST---------SRSSYEETELSRDEQAIFDRLRSWR 550
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
AR G Y + D T+++IA +PS+ +L + GV + ++++GD ++ I +S
Sbjct: 551 MGTAREHGVPAYVVFQDATLREIAKVKPSSIDQLRGVSGVGEKKLVSYGDEIVAIINEMS 610
>gi|295133854|ref|YP_003584530.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
gi|294981869|gb|ADF52334.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
Length = 702
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 135/321 (42%), Gaps = 55/321 (17%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+++ + +++L +G+GKD S N W+ QLI+ GY ++ Q
Sbjct: 432 NEQTLSKNYNRLKTYGIGKDISWNNWQQYILQLINLGYA---------EIAFHQ------ 476
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQ--LYHMLL 118
G+A L LT + + V E + + V D K A EN + ++ L+ L
Sbjct: 477 GNA-------LKLTKHAKDVLFEGKKVHLAKVPDRKLQAAAENNASEKVAVENSLFEKLR 529
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
+ R +AR Y + D T+K++ ARP T I+GV + + +G ++ I
Sbjct: 530 QLRLDIAREEEIPAYLIFNDATLKEMERARPMTDDDFMLINGVGRKKMEEYGYRFIKEII 589
Query: 179 HLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPG 238
S++ K G+ T +++ G + ++IA
Sbjct: 590 AFSKQKRTRKKQKKGKTYKITGEMYA---------------------KGKTPEEIA---- 624
Query: 239 RSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIK 298
+ + E T++ +LL+ EG I+ + +G D A+++A +G DKLKP
Sbjct: 625 KERELSEITIMSHLLKLYDEGESIDLNQF---IGKAD--LDAVRKAKKTLGDPDKLKPYF 679
Query: 299 NELPDDITYAHIKACL-VMEN 318
+ I Y IK L ++EN
Sbjct: 680 EHFEEAIPYNAIKIALKIIEN 700
>gi|163756913|ref|ZP_02164021.1| putative ATP-dependent DNA helicase [Kordia algicida OT-1]
gi|161323149|gb|EDP94490.1| putative ATP-dependent DNA helicase [Kordia algicida OT-1]
Length = 732
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 17/165 (10%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
G GK H +W L Q++ G L + I + Y + ++ G +L ++ ++
Sbjct: 459 FFGSGKSHDDKYWMALIRQVLVAGLLRKDI-ETYGVIKLTDAGLAFL-----ENPESFMM 512
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
T + + A + I+++ G+ + AD +L ML + RKK+A+ G P+
Sbjct: 513 TEDHDFAQAADSSIITASKGN-----------GAVADQKLMGMLKDLRKKVAKRLGVPPF 561
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
+ D +++ +AL P + + NI GV +G ++ I+
Sbjct: 562 VVFQDPSLEDMALKYPISLEEMKNIHGVGDGKAKKYGKDFIEFIK 606
>gi|126661004|ref|ZP_01732090.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. CCY0110]
gi|126617703|gb|EAZ88486.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. CCY0110]
Length = 710
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 120/298 (40%), Gaps = 54/298 (18%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
+G+GKD S+ WK L LI G++ ET D + + +++ + + R
Sbjct: 457 YGIGKDKSAAEWKMLGRSLIHQGFVNETT-DGFSVLKLNKYSWEIFRNERK--------- 506
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYA 134
V+ ++++S + S +E+D+ L H L + RK LA APY
Sbjct: 507 -----VEIAIAKSLTSKASNDYSPRK------AESDL-LLHKLRQLRKHLADQNKVAPYV 554
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGE 194
+ D +++ +A +P T I GV + +GD + IR Q+ +L
Sbjct: 555 VFADSSLRLMAQIKPQTIDAFKKISGVTAYKTQQYGDSFVSEIREFCQQQSLP------- 607
Query: 195 HTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLE 254
T L + ++ GLS+ +IA +KE T+ ++ E
Sbjct: 608 ---------------TPLPTSSNMVTLQLYQQGLSVSEIAE----RRNLKESTIYTHIAE 648
Query: 255 AVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKA 312
+ I+ + +++E I + I +G L +KN L D+ +Y ++
Sbjct: 649 LIEMQQPIDIDKF-----ISEEKKEMIIKCIQTLG-DGSLTLLKNNLGDNYSYNELRV 700
>gi|187778115|ref|ZP_02994588.1| hypothetical protein CLOSPO_01707 [Clostridium sporogenes ATCC
15579]
gi|187775043|gb|EDU38845.1| ATP-dependent DNA helicase RecQ [Clostridium sporogenes ATCC 15579]
Length = 709
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 96/206 (46%), Gaps = 19/206 (9%)
Query: 108 EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVI 167
+AD +L L + RK +++ P+ + D T+K+++ P+ + L I G+ +
Sbjct: 515 KADNELLDRLKQLRKAISQEESVPPFMIFPDATLKELSEYMPTKEEDLLKIKGIGERKAE 574
Query: 168 THGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDG 227
+G+ +++I + + + + K ++ K Y +K +G
Sbjct: 575 VYGERFIKSITEYMDEKGIDFNNMDNYEGTKSNK-----ESKIKTHVLSYNLYK----EG 625
Query: 228 LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISK 287
SI++IA+ +K T+ ++L + +SEG +++ + + I + I K
Sbjct: 626 KSIKEIAD----ERNLKAITIQEHLFKCLSEGMEVDLDNF-----IKKDYERLILDTIKK 676
Query: 288 VGCKDKLKPIKNELPDDITYAHIKAC 313
VG KLKP+K+ELP ++ Y IK+
Sbjct: 677 VGGT-KLKPVKDELPPEVDYMCIKSV 701
>gi|332882718|ref|ZP_08450329.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|332679220|gb|EGJ52206.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 329
str. F0087]
Length = 729
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 21/170 (12%)
Query: 8 QFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDH 67
+ D+ G+GKD +W L Q++ G + + I + Y + ++++GK+YL +
Sbjct: 454 RIDEQDFFGIGKDKEDAYWMALLRQVMVNGLIRKDI-ETYGVMFITEKGKEYLKNV---- 508
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
++T E+H T D + T S AD L ML + RKK+A+
Sbjct: 509 -TSFMMT--------EDH-TFEEEPEDPNNGNT------SVADPVLLEMLKDLRKKVAKQ 552
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
G P+ + D +++ +AL P T L N+ G+ + G ++ I
Sbjct: 553 KGVPPFVVFQDPSLEDMALKYPITIQELTNVHGIGEGKAKKFGAEFVKLI 602
>gi|153954997|ref|YP_001395762.1| RecQ protein [Clostridium kluyveri DSM 555]
gi|146347855|gb|EDK34391.1| RecQ [Clostridium kluyveri DSM 555]
Length = 719
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 133/329 (40%), Gaps = 74/329 (22%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
KKV+ F+KL +G+ KD+S +I++ Y+T + Y TV ++ Q + L
Sbjct: 440 KKVLHYGFNKLSTYGIMKDYSKEALSNFINTIIAHKYITLK-EGEYPTVVLNAQSIKVLK 498
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
+ ++L E++ +N T N+ L+ +L R
Sbjct: 499 G-----EEKVIL-----------KESVKAN------KITAHND--------LFEILRNLR 528
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
+++A PY + D T+K++++ P ++ +I GV + +G+ L I+
Sbjct: 529 REIALEESIPPYMVFSDATLKELSIRYPIDSNQILDISGVGDLKLKKYGERFLNIIKKYI 588
Query: 182 QKL----NLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYP 237
++ N S G + + R P + D + I++IA
Sbjct: 589 EENKIEPNWSFKGSITSKSE-----------RKNDKPKTHHITINMLRDNMGIKEIAK-- 635
Query: 238 GRSAPIKEQTVVDYLLEAVSEGF------DINWTRLCDEVGLTDEIFSAIQE-----AIS 286
K Q + +L +++ F DIN +E+F+ +E I
Sbjct: 636 ------KRQLTLSTILTHITKYFEEENVMDINIK--------FEELFTYSEEREVLKVID 681
Query: 287 KVGCKDKLKPIKNELPDDITYAHIKACLV 315
KVG KLKPIK LPD I Y I+A +V
Sbjct: 682 KVGI-SKLKPIKELLPDSINYDKIRAIIV 709
>gi|408379129|ref|ZP_11176723.1| ATP-dependent DNA helicase RecQ [Agrobacterium albertimagni AOL15]
gi|407746613|gb|EKF58135.1| ATP-dependent DNA helicase RecQ [Agrobacterium albertimagni AOL15]
Length = 618
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 14/169 (8%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G GKD + W+++ QL++ GY+ Y +++ + SAR + + +
Sbjct: 464 VFGAGKDLPAKTWQSVYRQLLAAGYI-RVDHTAYGALTLEE-------SARAVFKREVDV 515
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
F ++ T S G +AD +L+ L +R +LA+ G PY
Sbjct: 516 RFR------KDRPTTGKAARGQSSRTAQAKAGLDQADQELFEALRAKRMELAKEQGVPPY 569
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQ 182
+ D T+ +A RP + + +I G+ Q + +GD ++ I S+
Sbjct: 570 VIFPDTTLVALATGRPMDEDEMLSISGIGQSKLERYGDAFIEVITAYSR 618
>gi|319786295|ref|YP_004145770.1| ATP-dependent DNA helicase RecQ [Pseudoxanthomonas suwonensis 11-1]
gi|317464807|gb|ADV26539.1| ATP-dependent DNA helicase RecQ [Pseudoxanthomonas suwonensis 11-1]
Length = 623
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 25/183 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV + +L +G+G D +N W+++ QL+ G L V G L
Sbjct: 458 TEKVRQFRHHELSTYGIGTDLDTNTWRSVFRQLVVAGLLE---------VDAEGHGGLRL 508
Query: 61 GSA-RPDHQPPLLLTFNGE----MVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYH 115
G+A RP GE M + S+ GD S +TL + D L+
Sbjct: 509 GAAARP--------VLKGERQVLMREEPARRPGRSSGGDRPSQSTLHVDSH---DRPLFD 557
Query: 116 MLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQ 175
L R LAR Y + D+T++ IA RP+T + LA + GV + +G +L
Sbjct: 558 ALRAWRAGLAREQNVPAYVIFHDRTLRDIAQLRPATISELARVGGVGGGKLARYGQDVLD 617
Query: 176 TIR 178
IR
Sbjct: 618 VIR 620
>gi|357406115|ref|YP_004918039.1| ATP-dependent DNA helicase RecQ [Methylomicrobium alcaliphilum 20Z]
gi|351718780|emb|CCE24454.1| ATP-dependent DNA helicase RecQ [Methylomicrobium alcaliphilum 20Z]
Length = 711
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 124/306 (40%), Gaps = 56/306 (18%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D+ G+GKD W+++ QL++ G +T I+ GS R D
Sbjct: 447 DRQSTFGIGKDIDEKQWRSVFRQLVAKGLVTVDIEGY--------------GSLRLDESC 492
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
+L +++ +S+ G A + + E D L++ L +R++LA
Sbjct: 493 RTVLRGEQQLM---LRRDLSTESGKRSKGAVRQFQ--KEQDTLLWNALRTKRRELADEQD 547
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLD 189
PY + D T+ ++ +RP + +I GV + + +GD L I+
Sbjct: 548 IPPYQIFHDATLMEMVESRPMNHQQFRSISGVGERKLELYGDDFLAVIQEF--------- 598
Query: 190 GKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVV 249
G V E A V+ T L Y+A K+ ++ GL++ I N
Sbjct: 599 GAVSE--ALVSLSDSVLET-VDLFRLGYDAEKIANQRGLTMDTIYN-------------- 641
Query: 250 DYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDK----LKPIKNELPDDI 305
+L +A+ +G L + V L++ AIQ+AI +G D+ LKPI
Sbjct: 642 -HLAQALEQGI----VELAEAVALSEAEIHAIQDAI--LGMPDEQRNALKPIFEAFNGQY 694
Query: 306 TYAHIK 311
+Y ++
Sbjct: 695 SYGVLR 700
>gi|219855440|ref|YP_002472562.1| hypothetical protein CKR_2097 [Clostridium kluyveri NBRC 12016]
gi|219569164|dbj|BAH07148.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 721
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 133/329 (40%), Gaps = 74/329 (22%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
KKV+ F+KL +G+ KD+S +I++ Y+T + Y TV ++ Q + L
Sbjct: 442 KKVLHYGFNKLSTYGIMKDYSKEALSNFINTIIAHKYITLK-EGEYPTVVLNAQSIKVLK 500
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
+ ++L E++ +N T N+ L+ +L R
Sbjct: 501 G-----EEKVIL-----------KESVKAN------KITAHND--------LFEILRNLR 530
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
+++A PY + D T+K++++ P ++ +I GV + +G+ L I+
Sbjct: 531 REIALEESIPPYMVFSDATLKELSIRYPIDSNQILDISGVGDLKLKKYGERFLNIIKKYI 590
Query: 182 QKL----NLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYP 237
++ N S G + + R P + D + I++IA
Sbjct: 591 EENKIEPNWSFKGSITSKSE-----------RKNDKPKTHHITINMLRDNMGIKEIAK-- 637
Query: 238 GRSAPIKEQTVVDYLLEAVSEGF------DINWTRLCDEVGLTDEIFSAIQE-----AIS 286
K Q + +L +++ F DIN +E+F+ +E I
Sbjct: 638 ------KRQLTLSTILTHITKYFEEENVMDINIK--------FEELFTYSEEREVLKVID 683
Query: 287 KVGCKDKLKPIKNELPDDITYAHIKACLV 315
KVG KLKPIK LPD I Y I+A +V
Sbjct: 684 KVGI-SKLKPIKELLPDSINYDKIRAIIV 711
>gi|260774489|ref|ZP_05883403.1| ATP-dependent DNA helicase RecQ [Vibrio metschnikovii CIP 69.14]
gi|260610616|gb|EEX35821.1| ATP-dependent DNA helicase RecQ [Vibrio metschnikovii CIP 69.14]
Length = 611
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL +GLG+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 456 DKLSTYGLGRDHSHDYWVSIFRQLIHKGLLQQNITR-NSTLQLTEEAR------------ 502
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
P+L + +T + V S L N+ + D +L+ L + RK LA G
Sbjct: 503 PILRGDKAVELAVPRLDTAARAV----KSDKLSNKNY---DKKLFAKLRKLRKSLADEEG 555
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 556 LPPYVVFSDATLIDMADILPTSYGEMLAVNGVGQRKLEKYADPFLDVIQEHLT 608
>gi|149191369|ref|ZP_01869621.1| ATP-dependent DNA helicase RecQ [Vibrio shilonii AK1]
gi|148834786|gb|EDL51771.1| ATP-dependent DNA helicase RecQ [Vibrio shilonii AK1]
Length = 611
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 21/174 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL +G+G+DHS ++W ++ QLI G L++ I T+ ++++ +
Sbjct: 456 DKLTTYGIGRDHSHDYWVSIFRQLIHKGLLSQNITR-NSTLQLTEEAR------------ 502
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL N + +T + SA + D +L+ L + RK +A G
Sbjct: 503 PLLRGENSLELAVPRLDTAA-------RSAKSDKLASKHYDKKLFAKLRKLRKSIADEDG 555
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLSQ 182
PY + D T+ +A P++ + ++GV + + + D L I+ HL+Q
Sbjct: 556 LPPYVVFSDATLIDMAEILPTSYGEMLAVNGVGERKLEKYADPFLDLIQEHLTQ 609
>gi|317127470|ref|YP_004093752.1| ATP-dependent DNA helicase RecQ [Bacillus cellulosilyticus DSM
2522]
gi|315472418|gb|ADU29021.1| ATP-dependent DNA helicase RecQ [Bacillus cellulosilyticus DSM
2522]
Length = 718
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 31/215 (14%)
Query: 113 LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDH 172
L+ L + R LA+ PY + D+++ ++ P + + I GV + +G+
Sbjct: 519 LFEELRQLRGDLAKEANVPPYIVFSDKSLNEMCTYLPMSVEDMLEIKGVGEQKFERYGEI 578
Query: 173 LLQTIRHLSQ-----------KLNLSLDGK-VGEHTAFTRKLHVVVNTRTKLTPAKYEAW 220
L I+ + KL+ L+ + + +H V+ P+ +
Sbjct: 579 FLSAIKSYVENNPEAKNDSAPKLSPPLENRRITQHN---------VDLNGAKVPSHLLSI 629
Query: 221 KMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSA 280
+++ E G +I+ IA G I TV ++LL + G I++ L ++DE
Sbjct: 630 QLFQE-GKTIEDIAEQRG----ITTVTVENHLLRGATSGEKISFDHL-----ISDETKQL 679
Query: 281 IQEAISKVGCKDKLKPIKNELPDDITYAHIKACLV 315
I + I +VG +KPIK LP+ I+Y IKA L+
Sbjct: 680 IVDKIEEVGLAHGIKPIKEALPEHISYFAIKAVLM 714
>gi|300024077|ref|YP_003756688.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium denitrificans ATCC
51888]
gi|299525898|gb|ADJ24367.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium denitrificans ATCC
51888]
Length = 728
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 129/318 (40%), Gaps = 52/318 (16%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
++V+ D+L + G+GKD + WK L QL + GYLT + + V ++++ + L
Sbjct: 459 ERVLRNGHDRLSVFGIGKDLPAATWKGLFRQLTAQGYLTGDDEGMGSLV-LTERARPLL- 516
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
R + + + +T + + + +++ V + + L+ L R
Sbjct: 517 --RGEERFLMRVTQSKSKLAKKRGASLAPKV--------------AAQNQPLFDALKAVR 560
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
KLA PY + D+T+ ++A RP +++ L +I G+ + +G +Q I +
Sbjct: 561 LKLATAAKLPPYVVAQDRTLIELAEKRPKSESALHDILGLGASKIARYGAAFMQVISQFA 620
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
H A T +L VN A H GL ++IA+ G
Sbjct: 621 ------------AHPALTNRLSASVN-----------ATLAAHLRGLDAEQIASERG--- 654
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD--KLKPIKN 299
++ T+ +L EA+ G D V L I+ A + +D KL P
Sbjct: 655 -LEVGTIYGHLAEAIEAGL----ISAEDAVRLDPAERDEIEAAFDRCETRDTGKLGPAFG 709
Query: 300 ELPDDITYAHIKACLVME 317
L Y +K CL+ +
Sbjct: 710 ALDGRYNYGILK-CLLAD 726
>gi|284040794|ref|YP_003390724.1| ATP-dependent DNA helicase RecQ [Spirosoma linguale DSM 74]
gi|283820087|gb|ADB41925.1| ATP-dependent DNA helicase RecQ [Spirosoma linguale DSM 74]
Length = 736
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 4 VVDAQFDKLLLHGLGKDHSS--NWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
V + D+L ++G G + + N+W ++ Q+ YGYL + + D Y + ++Q+G Y+
Sbjct: 445 VTSYEHDRLAVYGKGLEFNEDCNFWCSVIKQITIYGYLEKDV-DNYGILKLTQRGLNYI- 502
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
+ P+ LT + ++E +++ + + + + G D +L +L R
Sbjct: 503 ----EDPYPVTLTKD------HDYEQQGADIKEEEDKDSAPSSGGIAYDEELLGLLKALR 552
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
K+LA+ PY + + +++++A P+T+ +A I+GV V G + I
Sbjct: 553 KRLAKEKNLPPYVIFQETSMEEMATTYPTTREEMAQINGVGMGKVQKFGKQFIDLI 608
>gi|442772186|gb|AGC72851.1| ATP-dependent DNA helicase RecQ [uncultured bacterium A1Q1_fos_97]
Length = 607
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 83/175 (47%), Gaps = 12/175 (6%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
+D + +G G+D S W+ QLI+ GYL E D + ++ ++ L R
Sbjct: 445 YDTIKTYGAGRDFSQWDWQHYLMQLINLGYL-EVAYDAANVLRLTLASQEVLFKNRS--- 500
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
+ L + +E E ++ K+ L+ E + +L+ L + RK++A+
Sbjct: 501 --VELIKPTSYKERQEQEQANAKT---KAPTQLKKERLRD---ELFEHLRQIRKEIAQKE 552
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQK 183
G PY + D T++++A ++P T+ + + GV + ++ G ++ IR+ +K
Sbjct: 553 GIPPYLIFSDATLEEMAFSKPQTEDDMLAVSGVGEKKLVQFGYRFIKAIRNYEKK 607
>gi|345888669|ref|ZP_08839734.1| ATP-dependent DNA helicase RecQ [Bilophila sp. 4_1_30]
gi|345040450|gb|EGW44706.1| ATP-dependent DNA helicase RecQ [Bilophila sp. 4_1_30]
Length = 610
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 20/183 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + F L +G+GKD + +WK L L G L + Y + V++ G + L
Sbjct: 446 NRRIRETGFQHLPTYGVGKDRTRRFWKYLIDALTRQG-LAAIEGEEYPYLRVTETGWETL 504
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
A P L + + E + S ++ + D L+ +L E
Sbjct: 505 RGA-PFRA--LRIVETRARRNRAERDGTSQDM---------------DVDDTLFQLLRAE 546
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI-RH 179
R++LA PY + D+ ++++A +P+++ + I GV + + +GD L I R+
Sbjct: 547 RRRLAEAAQVPPYVVFHDRALREMAAGKPASREAMLGIAGVGERKLAQYGDAFLAVIARY 606
Query: 180 LSQ 182
+S+
Sbjct: 607 ISE 609
>gi|343510097|ref|ZP_08747353.1| ATP-dependent DNA helicase RecQ [Vibrio scophthalmi LMG 19158]
gi|342803236|gb|EGU38611.1| ATP-dependent DNA helicase RecQ [Vibrio scophthalmi LMG 19158]
Length = 612
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 33/180 (18%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL +GLG+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 457 DKLSTYGLGRDHSHDYWVSVFRQLIHKGLLFQNITR-NSTLQLTEEAR------------ 503
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSAT------LENEGFSEADMQLYHMLLEERKK 123
PLL GEM T+ V L ++A L ++ + D +L+ L + RK
Sbjct: 504 PLL---RGEM-------TLELAVPRLDTAARAAKSDKLTSKNY---DKKLFAKLRKLRKS 550
Query: 124 LARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLSQ 182
+A G PY + D T+ +A P++ + ++GV Q + + D L I+ H++Q
Sbjct: 551 IADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHITQ 610
>gi|118579582|ref|YP_900832.1| ATP-dependent DNA helicase RecQ [Pelobacter propionicus DSM 2379]
gi|118502292|gb|ABK98774.1| ATP-dependent DNA helicase RecQ [Pelobacter propionicus DSM 2379]
Length = 714
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 128/311 (41%), Gaps = 44/311 (14%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+++++ D+L +G+G S+ W + QLI GYL + S+ G L
Sbjct: 437 QRILELGHDRLSTYGIGAALSTAQWDNIMRQLIHLGYLGQDF---------SRFGALALT 487
Query: 62 S-ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S ARP +LT ++ E + ++ L AT A L+ L
Sbjct: 488 SAARP------VLTGETRVILGEPRD-LARTEEKLSRRAT----AVDGAHGPLFKALKAL 536
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA G P+ + D T+ ++A + PS + +L + GV + +G L+ I
Sbjct: 537 RKELADDAGVPPFVVFSDATLLEMARSMPSDEGQLLLVSGVGTQKLRRYGARFLELIVAH 596
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
+ GE + L T + Y ++ H + ++A+ G
Sbjct: 597 CGAADTG-----GEPDDLPQALQGQSETLRQ----TYRLYRQGH----GLPQLASMRG-- 641
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNE 300
+KE TV +L E G +I+ R ++ E S I+ + +VG L +K
Sbjct: 642 --LKETTVAAHLEELSDAGAEIDLRRF-----VSPEKQSLIEARLEQVG-PFSLSLLKEG 693
Query: 301 LPDDITYAHIK 311
LPDDI Y ++
Sbjct: 694 LPDDIGYTELR 704
>gi|116253149|ref|YP_768987.1| ATP-dependent DNA helicase RecQ [Rhizobium leguminosarum bv. viciae
3841]
gi|115257797|emb|CAK08895.1| putative ATP-dependent DNA helicase RecQ [Rhizobium leguminosarum
bv. viciae 3841]
Length = 622
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 16/164 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G GKD + W+++ QL++ G L + + + + + + R
Sbjct: 469 VFGAGKDIPARVWQSVFRQLLAMG-LIRVDHEAFGALKLEPEARSVFKHERQ-------- 519
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
F + A E T + + KS G S AD L+ L ER +A+ G PY
Sbjct: 520 VFFRKDRPASERRTKKAERSERKS-------GLSGADGSLFEALRAERMAIAKSLGVPPY 572
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D T+ A RP ++ L I GV Q + +GD L+ I
Sbjct: 573 VVFPDTTLIAFATERPGSRKELLAISGVGQAKLERYGDAFLEII 616
>gi|414343519|ref|YP_006985040.1| ATP-dependent DNA helicase RecQ [Gluconobacter oxydans H24]
gi|411028854|gb|AFW02109.1| ATP-dependent DNA helicase RecQ [Gluconobacter oxydans H24]
Length = 616
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 78/176 (44%), Gaps = 17/176 (9%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
++ L + G+GKD + NWW+ + QLI+ G ++ G+ + + +
Sbjct: 456 YNHLSVFGIGKDQTENWWRAVVRQLIARG-------------AIRTHGEHGSLALQTEIA 502
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
P+L ++ + +++ + S+ ENE S + ++ L + R AR
Sbjct: 503 RPILRGDEKILLRQDTRQSLIART----PSSNQENESLSPEEKTVFDALRQWRLSEAREQ 558
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKL 184
PY + D ++ IA P + LA+I GV + +G+ +L I+ +S +
Sbjct: 559 EIPPYVIFHDSVLRDIAREHPVSHHELASIKGVGTSKLDRYGESVLAVIKEISATI 614
>gi|325110491|ref|YP_004271559.1| ATP-dependent DNA helicase RecQ [Planctomyces brasiliensis DSM
5305]
gi|324970759|gb|ADY61537.1| ATP-dependent DNA helicase RecQ [Planctomyces brasiliensis DSM
5305]
Length = 741
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 136/316 (43%), Gaps = 41/316 (12%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
++++D D++ +GL K HS ++ QL + L + Y T++V+ G+Q
Sbjct: 456 QRLLDNGHDQVSTYGLLKAHSKKEIRSWIDQLEAQQCLER--QGDYGTLAVTPIGRQVF- 512
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
R ++QP L M + SS DL ++A +L+ +L E R
Sbjct: 513 --REEYQPRLTQV----MGRTAARRSASS---DLDATA-----------QELFDLLRELR 552
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
+ LA+ AP+ + GD T+ +A RP+ + + GV + +GD L+ I+
Sbjct: 553 RTLAKEKKVAPFVIFGDVTLIDLATHRPTKISSFLLMHGVGRRKCEQYGDPFLEAIQEFC 612
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYE--AWKMWHEDGLSIQKIANYPGR 239
+K +L D + A + P E A +++ E GLS+ ++ + R
Sbjct: 613 EKRDLPGDVDLPAEMA-----AATTPSSGSAEPNDIEQTAAELFSE-GLSLDEVGDRLNR 666
Query: 240 SAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKN 299
+ TVV YL + + T +++E F I A + D+LKP+
Sbjct: 667 A----RSTVVGYLTAYLKRERKTDPTPW-----ISEETFQNISLAALEAE-SDRLKPLHE 716
Query: 300 ELPDDITYAHIKACLV 315
L +++Y ++ ++
Sbjct: 717 ALGGEVSYDELRIAMI 732
>gi|304393339|ref|ZP_07375267.1| ATP-dependent DNA helicase RecQ [Ahrensia sp. R2A130]
gi|303294346|gb|EFL88718.1| ATP-dependent DNA helicase RecQ [Ahrensia sp. R2A130]
Length = 637
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGK--- 57
++KVV + D+L HG G+ HS W+++ Q+ + L E Y ++ +++QG
Sbjct: 465 TEKVVKVRHDRLECHGTGERHSKPMWQSIIRQMCA-AQLLEVDVAGYSSLLITKQGNALS 523
Query: 58 QYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
+ G R P L G+ A+ SSN G ++ N SE D +L L
Sbjct: 524 RGQGEFRIRMDP--LAGTGGKGSKAK-----SSNSGSWGNAQPAIN--LSERDRELLTSL 574
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
++R +LA+ G Y + D+T+ +A RP+ + + GV + + G+ + +
Sbjct: 575 KKKRLELAKERGVPAYVIFPDKTLTDMAQRRPTDAEEFSQVKGVGKSKLDQFGEMFMDVV 634
Query: 178 R 178
R
Sbjct: 635 R 635
>gi|343516209|ref|ZP_08753250.1| ATP-dependent DNA helicase RecQ [Vibrio sp. N418]
gi|342796629|gb|EGU32302.1| ATP-dependent DNA helicase RecQ [Vibrio sp. N418]
Length = 612
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 33/180 (18%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL +GLG+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 457 DKLSTYGLGRDHSHDYWVSVFRQLIHKGLLFQNITR-NSTLQLTEEAR------------ 503
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSAT------LENEGFSEADMQLYHMLLEERKK 123
PLL GEM T+ V L ++A L ++ + D +L+ L + RK
Sbjct: 504 PLL---RGEM-------TLELAVPRLDTAARAAKSDKLTSKNY---DKKLFAKLRKLRKS 550
Query: 124 LARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLSQ 182
+A G PY + D T+ +A P++ + ++GV Q + + D L I+ H++Q
Sbjct: 551 IADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHITQ 610
>gi|257464903|ref|ZP_05629274.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor 202]
gi|257450563|gb|EEV24606.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor 202]
Length = 604
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 20/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D+L ++G+GK+ S ++W ++ QLI G + + I V+ Q
Sbjct: 438 NQKIRQFGHDQLSVYGIGKEQSQDYWVSVIRQLIHLGLVRQNI--------VNHSALQLT 489
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
ARP + + L E +G ++A + +G D L+ L
Sbjct: 490 EEARPVLKSQVKL------------ELALPRLGSSSATAFVSKQGSVRYDKDLFARLRFL 537
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A P T A L I+GV + + G + I+
Sbjct: 538 RKQIADNENIPPYVVFNDATLQEMAEFLPLTPAELLEINGVGERKLERFGGAFISLIK 595
>gi|221134099|ref|ZP_03560404.1| ATP-dependent DNA helicase [Glaciecola sp. HTCC2999]
Length = 596
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 22/176 (12%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+++V+ +DKL G+GKD + +W + QLI GYL I + Y + ++ K L
Sbjct: 436 QRIVEQGYDKLSTFGIGKDKADEYWVNIINQLIHKGYLFIDITN-YAVLRLTDAAKPILR 494
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
+P LT + G K L N + D +L+ L R
Sbjct: 495 GEQP-------LTL-----------AVPRLSGTSKKQQKLANVSY---DKELFAKLKHLR 533
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
K+LA G PY + D ++ +A P + + GV Q + +GD + I
Sbjct: 534 KRLADEIGKPPYVIFSDASLVDMAQNLPMEASDFLFVSGVGQVKLERYGDQFINLI 589
>gi|317484346|ref|ZP_07943267.1| ATP-dependent DNA helicase RecQ [Bilophila wadsworthia 3_1_6]
gi|316924424|gb|EFV45589.1| ATP-dependent DNA helicase RecQ [Bilophila wadsworthia 3_1_6]
Length = 617
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 20/183 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + F L +G+GKD + +WK L L G L + Y + V++ G + L
Sbjct: 453 NRRIRETGFQHLPTYGVGKDRTRRFWKYLIDALTRQG-LAAIEGEEYPYLRVTETGWETL 511
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
A P L + + E + S ++ + D L+ +L E
Sbjct: 512 RGA-PFRA--LRIVETRARRNRAERDGASQDM---------------DVDDTLFQLLRAE 553
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI-RH 179
R++LA PY + D+ ++++A +P+++ + I GV + + +GD L I R+
Sbjct: 554 RRRLAEAAQVPPYVVFHDRALREMAAGKPASREAMLGIAGVGERKLALYGDAFLAVIARY 613
Query: 180 LSQ 182
+S+
Sbjct: 614 ISE 616
>gi|302391953|ref|YP_003827773.1| ATP-dependent DNA helicase, RecQ-like protein [Acetohalobium
arabaticum DSM 5501]
gi|302204030|gb|ADL12708.1| ATP-dependent DNA helicase, RecQ-like protein [Acetohalobium
arabaticum DSM 5501]
Length = 711
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 98/211 (46%), Gaps = 19/211 (9%)
Query: 102 ENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
E E SE D +L+ +L RK++A AP+ + D T++ + PS K + + G+
Sbjct: 510 ETEKISE-DNELFDILRRLRKEIAAEERVAPFVIFHDSTLQDMVEKLPSNKEEMMKVSGM 568
Query: 162 NQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWK 221
+ +G L+ I +N +D E T ++ ++ + K + +++K
Sbjct: 569 GKIKFKKYGFQFLEKINQYC--VNKDID---REKTRIKQEKDKII--KNKELKSYMKSYK 621
Query: 222 MWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAI 281
++ D ++++IA + TV ++++ A EG +++ I I
Sbjct: 622 LYQSDN-NLEEIAEMRDLALT----TVQNHIIRAAEEGQEVDLDSFV-PAQYRQLILEKI 675
Query: 282 QEAISKVGCKDKLKPIKNELPDDITYAHIKA 312
+E+ D+LKPIK LP++I+Y IKA
Sbjct: 676 EES-----SNDRLKPIKEALPEEISYFQIKA 701
>gi|443324439|ref|ZP_21053192.1| ATP-dependent DNA helicase RecQ [Xenococcus sp. PCC 7305]
gi|442795958|gb|ELS05292.1| ATP-dependent DNA helicase RecQ [Xenococcus sp. PCC 7305]
Length = 709
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 122/298 (40%), Gaps = 56/298 (18%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
+G+GK+ S + WK L L+ G ++ET D YR + +++
Sbjct: 454 YGIGKEKSIDEWKMLVRSLLHQGLISET-NDGYRILRLNKN------------------- 493
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYA 134
+ E++ + I+ L T + +EA++ LY L RK +A + PY
Sbjct: 494 -SWEILKKQRSVQIAVTQKKLGKGETKYSPRQAEAEI-LYEKLRVLRKNIADLQAVPPYV 551
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGE 194
+ D ++K ++ +P + I GVN H + +GD L I+
Sbjct: 552 IFADSSLKLMSQLQPKNDKEFSRISGVNNHKLQQYGDKFLSIIQD--------------- 596
Query: 195 HTAFTRKLHVVVNTRTKLTPAKYE-AWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLL 253
FTR + K P+K + A H+ GL+ ++IAN G + T+ +L
Sbjct: 597 ---FTRSQEL-----PKPLPSKSQMATLQLHQQGLNPEEIANKRGFAM----STICTHLG 644
Query: 254 EAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIK 311
+ + + +L + E AI EAI+K G LK ++ L +Y IK
Sbjct: 645 DLLEMNQPVALNQL-----VKPERQKAIVEAIAKHG-DVSLKTLRESLGKYYSYDEIK 696
>gi|300714809|ref|YP_003739612.1| ATP-dependent DNA helicase [Erwinia billingiae Eb661]
gi|299060645|emb|CAX57752.1| ATP-dependent DNA helicase [Erwinia billingiae Eb661]
Length = 608
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 26/181 (14%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D Q DKL ++G+GKD S W ++ QLI G +T+ I Q
Sbjct: 443 NQRIRDMQHDKLPIYGIGKDQSHEHWVSVLRQLIHLGLVTQNI--------AMHSALQLT 494
Query: 61 GSARPDHQPPLLLTFNGE---MVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
+ARP GE M+ T+ + KS D +L+ L
Sbjct: 495 EAARP--------VLRGEASLMLAVPRLVTVKTRSSSQKSYG-------GNYDRKLFAKL 539
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ RK +A PY + D ++ ++A P T + + ++GV Q + G + I
Sbjct: 540 RKLRKAIADENNVPPYVVFNDASLIEMAEQMPITASEMLGVNGVGQKKLERFGKPFMVMI 599
Query: 178 R 178
R
Sbjct: 600 R 600
>gi|311746386|ref|ZP_07720171.1| ATP-dependent DNA helicase RecQ [Algoriphagus sp. PR1]
gi|126575272|gb|EAZ79604.1| ATP-dependent DNA helicase RecQ [Algoriphagus sp. PR1]
Length = 725
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 18/198 (9%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ G G +W + Q + L + I++ Y + ++ +GK ++ + H
Sbjct: 447 DKIEAFGKGNHVPEKYWTAIIRQAMIADLLEKDIEN-YGVLKITPRGKAFMDAP---HSI 502
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
L ++H+ N D +E G + D L+ +L ERKK+AR G
Sbjct: 503 NLY----------KDHDY--ENETDTDGPEVVERTGVA-YDENLFELLKAERKKVARSKG 549
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLD 189
PY + D +++++A P+++ LA I+GV V G L+ I + ++ +
Sbjct: 550 LPPYVIFQDPSLEEMATVYPTSREELAQINGVGMGKVAKFGSSFLKIISNYVEENEIETA 609
Query: 190 GKVGEHTAFTR-KLHVVV 206
V TA +R KL + +
Sbjct: 610 SDVVVKTAGSRSKLKITI 627
>gi|119773474|ref|YP_926214.1| ATP-dependent DNA helicase RecQ [Shewanella amazonensis SB2B]
gi|119765974|gb|ABL98544.1| ATP-dependent DNA helicase RecQ [Shewanella amazonensis SB2B]
Length = 607
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 23/179 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ VVD DKL G+GK+ S+ +W ++ QLI G ++ D+ R SV
Sbjct: 443 AASVVDRGHDKLSTWGIGKEKSTEYWLSVTRQLIHLGLASQ---DITRGSSVRLNS---- 495
Query: 61 GSARPDHQPPLLLTFNGE--MVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLL 118
+ARP GE ++ AE ++S SS T +N D +L+ L
Sbjct: 496 -AARP--------VLKGEVALMLAEPRLSLSDVPRKRTSSRTPQN-----YDRKLFARLK 541
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R+ +A PY + D T+ ++A P ++A L ++GV + + G L I
Sbjct: 542 NLRRTIAEEQDVPPYLVFNDATLAEMAWMLPKSEAELLAVNGVGERKLARFGGEFLDEI 600
>gi|357043893|ref|ZP_09105579.1| ATP-dependent DNA helicase RecQ [Prevotella histicola F0411]
gi|355367947|gb|EHG15373.1| ATP-dependent DNA helicase RecQ [Prevotella histicola F0411]
Length = 727
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 20/181 (11%)
Query: 6 DAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARP 65
D + D+L G G+D W + Q + GYL + + D Y + ++ GK+++ S
Sbjct: 449 DHKHDELDDFGAGEDEDPKIWNPVVRQALLAGYLKKDV-DNYGLLKLTAAGKRFMKSPES 507
Query: 66 DHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLA 125
++ + E D E E S G + D L+ ML RKK+A
Sbjct: 508 -----FMIVMDTEFKDEESDEEPMS--------------GTAVLDPTLFSMLKSLRKKVA 548
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
PY + D +++++A+ P + L NI GV +G + I+ ++ N
Sbjct: 549 HKLDIPPYVIFQDVSLEQMAMMYPVNEQELQNIQGVGAGKAKRYGREFYELIKSYCEENN 608
Query: 186 L 186
+
Sbjct: 609 I 609
>gi|327402848|ref|YP_004343686.1| ATP-dependent DNA helicase RecQ [Fluviicola taffensis DSM 16823]
gi|327318356|gb|AEA42848.1| ATP-dependent DNA helicase RecQ [Fluviicola taffensis DSM 16823]
Length = 726
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D+ L G+GKD ++W + Q + G L + I + Y T+ +++G+++L + +P
Sbjct: 450 DQAPLFGVGKDRDEHFWNAVIRQTLVAGLLYKDI-ETYGTLKFTERGREFLAAPKP---- 504
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
++H+ +S+ D S + F E LY +L++ RK L++
Sbjct: 505 ---------FTLLKQHDYSASDEDDSMVSPG-KGGAFDEV---LYGLLIDLRKSLSKQNN 551
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNL 186
P+ + + T+K + P T L N GV +G+ ++ I ++ N+
Sbjct: 552 IPPFVIFQEPTLKDMCFQYPITIDELTNCQGVGAGKAQRYGEPFIEMILSYVEENNI 608
>gi|389873105|ref|YP_006380524.1| ATP-dependent DNA helicase [Advenella kashmirensis WT001]
gi|388538354|gb|AFK63542.1| ATP-dependent DNA helicase [Advenella kashmirensis WT001]
Length = 609
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV D L + G+G++ S W+++ QL++ +T D Y T++++++ + L
Sbjct: 443 TEKVAQHSHDTLSVFGIGQEISEQGWRSVLRQLMAANVVT-VDGDGYGTLALTEKSRSVL 501
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETI--SSNVGDLKSSATLENEGFSEADMQLYHMLL 118
GE V E+ ++ ++ E S A + L
Sbjct: 502 ---------------KGEQVLMMRKESARAAARSRNIMPRGKREVRVLSAAAQARFESLR 546
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
+ R+ +A+ G Y + D T+ +IA PST + LA ++GV QH + T+G+ +L +
Sbjct: 547 QWRRDIAKEHGVPAYVIFKDDTLAQIAELEPSTLSDLAAVNGVGQHKLDTYGEAILTFLD 606
Query: 179 HL 180
L
Sbjct: 607 EL 608
>gi|83858641|ref|ZP_00952163.1| DEAD/DEAH box helicase [Oceanicaulis sp. HTCC2633]
gi|83853464|gb|EAP91316.1| DEAD/DEAH box helicase [Oceanicaulis sp. HTCC2633]
Length = 593
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ KV+ D L G+G+D S W ++ QL + G + + I D + ++ +GK L
Sbjct: 428 TDKVMARGHDALPTFGVGEDLSKEQWMSVFRQLFASGAIDQPI-DGHGEWIITAKGKDIL 486
Query: 61 GSARPDH-QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
+ + +PP EE + S+ +A ++ SEAD +Y L +
Sbjct: 487 FAKQGIRLRPP------------EEQRGVRSSRARPSDAA---DQLLSEADRTIYIALRK 531
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
+R +LA+ +G Y + D+T+ ++A +P T L+ I GV + +G L I+
Sbjct: 532 KRLELAKESGKPAYTIFADRTLIEMAAEKPQTPEALSRIFGVGARKLERYGSEFLSVIK 590
>gi|381186153|ref|ZP_09893727.1| ATP-dependent DNA helicase RecQ [Flavobacterium frigoris PS1]
gi|379651827|gb|EIA10388.1| ATP-dependent DNA helicase RecQ [Flavobacterium frigoris PS1]
Length = 731
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 95/203 (46%), Gaps = 21/203 (10%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
G G +W L Q++ GYLT+ I + Y V ++ QG ++ + L+
Sbjct: 459 FFGSGAAFDEKYWMALLRQVLVAGYLTKDI-ETYGIVKITDQGLDFIKNP-----SSFLM 512
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
+ + E +A + ++++ KSSA + D L +ML + RKK+++ G P+
Sbjct: 513 SEDHEYNEAGDEAIVTAS----KSSAVI--------DEVLMNMLRDLRKKVSKKIGVPPF 560
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI-RHLSQKLNLSLDGKV 192
+ D +++ +AL P + L +I GV + +G ++ I +++ + L + +
Sbjct: 561 VVFQDPSLEDMALKYPISVEELIHIHGVGEGKAKKYGKEFVELISKYVEENEILRPEDLI 620
Query: 193 GEHTAF--TRKLHVVVNTRTKLT 213
+ T KL+++ N KL+
Sbjct: 621 VKSTGIKSANKLYIIQNVDRKLS 643
>gi|282896865|ref|ZP_06304871.1| ATP-dependent DNA helicase RecQ [Raphidiopsis brookii D9]
gi|281198274|gb|EFA73164.1| ATP-dependent DNA helicase RecQ [Raphidiopsis brookii D9]
Length = 719
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 37/190 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVS-------VS 53
++K+ + D+L +G+GKD +++ WK L L+ G L +T D Y + V
Sbjct: 441 NQKISLHKHDQLSTYGIGKDKTADEWKMLCRSLLHQGLLEQT-HDGYSVLKLNALSWEVM 499
Query: 54 QQGKQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQL 113
++ +Q L +A P +Q L+ N + +D E L NE
Sbjct: 500 RKQRQVLIAA-PVYQKADLVAINTKALDIE----------------ALMNE--------- 533
Query: 114 YHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHL 173
L RK++A G APY + D T++ +A +P T L I GV + V +G+
Sbjct: 534 ---LRYLRKQIADELGLAPYIIFQDSTVRLMAQIKPRTLEELGQISGVVSYKVNQYGERF 590
Query: 174 LQTIRHLSQK 183
L I+ Q+
Sbjct: 591 LAVIQSYIQE 600
>gi|39996003|ref|NP_951954.1| ATP-dependent DNA helicase RecQ [Geobacter sulfurreducens PCA]
gi|39982768|gb|AAR34227.1| ATP-dependent DNA helicase RecQ [Geobacter sulfurreducens PCA]
Length = 603
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 84/178 (47%), Gaps = 15/178 (8%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S++++ D+L +G+G ++ W ++ QLI GYL + + + Y + ++
Sbjct: 436 SERILALGHDRLSTYGIGASLAAEAWGSIIRQLIHRGYLEQDLAN-YSVLKLTP------ 488
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP LL +V A+ +++ + K+ +E D +L+ L
Sbjct: 489 -AARP------LLRGEESLVLAKPRLRMAAPKKE-KAPRRPGAATPAERDEELFQELRAL 540
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK+LA PY + D T+ ++A RP+T L ++GV + + +G L+ IR
Sbjct: 541 RKRLADDQQVPPYIIFSDATLAEMASLRPTTPEELLRVNGVGERKLGRYGAPFLEAIR 598
>gi|384261924|ref|YP_005417110.1| ATP-dependent DNA helicase RecQ [Rhodospirillum photometricum DSM
122]
gi|378403024|emb|CCG08140.1| ATP-dependent DNA helicase RecQ [Rhodospirillum photometricum DSM
122]
Length = 676
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 27/185 (14%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETI------KDVYRTVSVSQ 54
+ V++ D+L G+G+D + W+ L QL + G +T+ + + R +V +
Sbjct: 502 TDNVLNYGHDRLPTFGVGRDQTRGVWRALVRQLYAAGLITQDLTAHGAWRMTARGNAVLR 561
Query: 55 QGKQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFS--EADMQ 112
G+++ MV A+ + +S K+S S AD
Sbjct: 562 GGERF-------------------MVRADVMKAAASRDPKGKASKAAAQPALSLAPADRV 602
Query: 113 LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDH 172
++ L RK LA G PY + D+T+ ++A RP + L I GV + +G+
Sbjct: 603 IFDALRALRKTLASQEGVPPYVVFPDRTLVEMATLRPRRREDLEGIHGVGASKLARYGEA 662
Query: 173 LLQTI 177
L I
Sbjct: 663 FLAGI 667
>gi|408827125|ref|ZP_11212015.1| ATP-dependent DNA helicase [Streptomyces somaliensis DSM 40738]
Length = 614
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 14/177 (7%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ KV+ D L + G+G D + W+ + QL++ G L ++ Y T++++ + + L
Sbjct: 448 TDKVIRFDHDALSVFGIGTDLTEAQWRGVVRQLLAQGLL--AVQGEYNTLALTGESAEVL 505
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R +L+ E + T + + G K +A + E + ++ L
Sbjct: 506 SGRR-----QVLMRSEPE----KPARTSAKSGGGRKKAAPAD---LPEEALPVFERLRAW 553
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R AR G Y + D T+++IA A P+T A L + GV ++ + +G LL +
Sbjct: 554 RAATAREQGVPAYVVFHDATLREIAAAPPATLAELGTVSGVGENKLARYGQSLLDAL 610
>gi|421497331|ref|ZP_15944503.1| ATP-dependent DNA helicase RecQ [Aeromonas media WS]
gi|407183677|gb|EKE57562.1| ATP-dependent DNA helicase RecQ [Aeromonas media WS]
Length = 607
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 28/182 (15%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQ---Q 55
++++ D DKL +G+GKD S +W ++ QLI G LT+ I V + ++ +
Sbjct: 443 NQRIKDHGHDKLSTYGIGKDQSHEYWMSVIRQLIHKGLLTQNITRNLVLQLTEAARPVLR 502
Query: 56 GKQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYH 115
G+ L A P QP ISS K S L+N + D +L+
Sbjct: 503 GETTLALAVPRLQP------------------ISSR--KEKRSGLLDNANY---DKRLFK 539
Query: 116 MLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQ 175
L RK++A PY + D T+ ++A P T+ + I+GV + G+ +
Sbjct: 540 ELRGLRKQIAEDEEVPPYVVFNDATLVEMAQLMPMTEDEMLAINGVGHRKLERFGEAFMD 599
Query: 176 TI 177
I
Sbjct: 600 LI 601
>gi|375255218|ref|YP_005014385.1| ATP-dependent DNA helicase RecQ [Tannerella forsythia ATCC 43037]
gi|363408301|gb|AEW21987.1| ATP-dependent DNA helicase RecQ [Tannerella forsythia ATCC 43037]
Length = 786
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
++ + ++L L G G+D W + Q GY+ + I++ Y + ++ QG++Y+
Sbjct: 504 ILSYKHNELELFGAGQDEDEKTWNAVIRQAQIAGYIAKDIEN-YGLLKITPQGREYM--- 559
Query: 64 RPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKK 123
QP ++F ++V E E D + TL + G S D L+ ++ + RKK
Sbjct: 560 ---KQP---VSF--KIVKDNEFEE------DDATETTLRSGGSSAVDPALFSIMKDLRKK 605
Query: 124 LARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
L++ P+ + D +++ +A P T L NI GV +G + I+
Sbjct: 606 LSKQLDVPPFVIFQDPSLEAMATTYPITLDELQNIPGVGAGKAKRYGTAFVALIK 660
>gi|445499562|ref|ZP_21466417.1| ATP-dependent DNA helicase recQ [Janthinobacterium sp. HH01]
gi|444789557|gb|ELX11105.1| ATP-dependent DNA helicase recQ [Janthinobacterium sp. HH01]
Length = 607
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 15/171 (8%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D L + G+G D S W+ + Q+I+ G +T +QY D
Sbjct: 451 DSLSVFGIGADRSEAEWRAILRQVIALGLVT-------------VDHEQYSSLKLTDAAR 497
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
P+L G+ V +++ K+S S + ++ L R + AR
Sbjct: 498 PVLK--GGQKVQLRQYQKPVKQKSPSKASKGYVESDLSPREQAIFDKLRWWRVETARAHD 555
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
A Y + D T+++IA ARP+T + L I GV + + ++GD ++ I +
Sbjct: 556 VAAYIIFNDATLREIAKARPTTLSDLRGISGVGEKKLASYGDEIVAMISEM 606
>gi|285019020|ref|YP_003376731.1| DNA helicase superfamily II protein [Xanthomonas albilineans GPE
PC73]
gi|283474238|emb|CBA16739.1| putative dna helicase superfamily II protein [Xanthomonas
albilineans GPE PC73]
Length = 602
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 15/178 (8%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S+K+ ++L +G+GKD W+ + QL++ G L E D Y + ++ +Q L
Sbjct: 437 SEKIKQFGHERLSTYGIGKDLDIRAWRGVFRQLVATGLL-EVDSDAYGGLRLTDASRQVL 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R +++ E + S + GD +S + D+ L++ L +
Sbjct: 496 KGER-------------QIMMRRELPSRSRDRGD-RSGSPRTGLPVQPQDLGLFNALRDL 541
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
R LA+ + + D T++ IA RP+ LA + G+ + +G L++ +R
Sbjct: 542 RAGLAKEQNVPAFVIFHDSTLRNIAEQRPTNLDALARVGGIGGSKLARYGQQLIEVVR 599
>gi|387814250|ref|YP_005429733.1| ATP-dependent DNA helicase [Marinobacter hydrocarbonoclasticus ATCC
49840]
gi|381339263|emb|CCG95310.1| ATP-dependent DNA helicase [Marinobacter hydrocarbonoclasticus ATCC
49840]
Length = 625
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 84/183 (45%), Gaps = 17/183 (9%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+++++ + + +G+G++ S+N WK++ QL++ GYL + Y + ++++ + L
Sbjct: 455 NERILQSGHQAITTYGIGQELSANEWKSVFRQLVANGYLRAD-PEGYGALQLTERCRPLL 513
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSE--ADMQLYHMLL 118
A + ++ + + + G S++ + + D + L
Sbjct: 514 KGA--------------QAIELRKDPVVRNTAGGKSSTSRRSGQNVRDQITDHAGWDALR 559
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK+LA G PY + D T+ + RPST LA + GV + +GD LQ +R
Sbjct: 560 ACRKELADKQGVPPYVIFHDTTLFDMLERRPSTLEELAEVSGVGAAKLEKYGDVFLQALR 619
Query: 179 HLS 181
++
Sbjct: 620 SIN 622
>gi|407775074|ref|ZP_11122370.1| ATP-dependent DNA helicase RecQ [Thalassospira profundimaris
WP0211]
gi|407282022|gb|EKF07582.1| ATP-dependent DNA helicase RecQ [Thalassospira profundimaris
WP0211]
Length = 610
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ DKL ++ +GKD + W+++ QL++ GYL V V G YL
Sbjct: 446 TEKIRQNGHDKLSVYAIGKDIAQPQWRSVFRQLLAMGYLE---------VDVEGHGGVYL 496
Query: 61 GS-ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
+RP GE V + S K + E +E D L+ L
Sbjct: 497 TEESRP--------VLRGEKVVEMRKDPGESKRAMTKRLRDFDTEFENEQDRDLWERLRT 548
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R++LA PY + D+T+ ++ +P T +A+I+GV + +G L +
Sbjct: 549 LRRELATSQNVPPYVIFSDRTLWEMVRFKPRTLEDMASINGVGVKKLDQYGLAFLDVM 606
>gi|374287671|ref|YP_005034756.1| ATP-dependent DNA helicase [Bacteriovorax marinus SJ]
gi|301166212|emb|CBW25787.1| ATP-dependent DNA helicase [Bacteriovorax marinus SJ]
Length = 605
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 23/181 (12%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
KV + L ++G+GKD + + W + QL++ Y+ + + YRT+++ ++ +
Sbjct: 447 KVEERGHHNLSVYGIGKDETKSHWNLIVRQLLNMKYIAISNWE-YRTLTLMKKSEA---- 501
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
++ EE + L+ SA EN+ D L++ L + RK
Sbjct: 502 ----------------LLKGEEEFLLKKRKITLRKSAPTENQNHQRDD--LFNNLRKIRK 543
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQ 182
+A G AP+ + GD+T+ + P K+ ++GV + +GD L+ I Q
Sbjct: 544 SIANENGLAPFMIFGDKTLHDMCHLLPRDKSEFLMVNGVGTNKCERYGDDFLKEINSYIQ 603
Query: 183 K 183
+
Sbjct: 604 R 604
>gi|117924742|ref|YP_865359.1| ATP-dependent DNA helicase RecQ [Magnetococcus marinus MC-1]
gi|117608498|gb|ABK43953.1| ATP-dependent DNA helicase RecQ [Magnetococcus marinus MC-1]
Length = 605
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
G+GK H+ N W + QLI GYL + YRT+ ++Q S RP
Sbjct: 459 GIGKKHAKNEWMDIYKQLIFKGYLR--VVGEYRTLKLAQ-------SCRP--------VL 501
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
GE+ T S V + E + D QL+ L+ R++ A G PY +
Sbjct: 502 RGEV--EVRLRTKSRKVKKVFKR-RYETAFTTHNDQQLWDALVRWRRETASAQGVPPYII 558
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQH 164
G+ T++ + +RP ++++L + G+ H
Sbjct: 559 FGNATLEAVVESRPRSRSQLHQLPGIGTH 587
>gi|441506545|ref|ZP_20988513.1| ATP-dependent DNA helicase RecQ [Photobacterium sp. AK15]
gi|441425751|gb|ELR63245.1| ATP-dependent DNA helicase RecQ [Photobacterium sp. AK15]
Length = 613
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 21/182 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL HG+G++HS +W ++ QLI GYL + I V Q
Sbjct: 448 NQRIRELGHDKLSTHGIGREHSHEFWVSILRQLIHRGYLVQNI--------VRSSTLQLT 499
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
AR GE+ E E + SA + D +L+ L +
Sbjct: 500 EKARG--------VLRGEV----ELELAVPRLDIAARSAKNDKLASRHYDKKLFAKLRKL 547
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI-RH 179
RK +A PY + D T+ ++A P++ L ++GV + +GD L I H
Sbjct: 548 RKAIADEEDLPPYVVFNDATLMEMAEMLPTSAGELLAVNGVGHRKLEKYGDAFLTLIEEH 607
Query: 180 LS 181
L+
Sbjct: 608 LT 609
>gi|407790669|ref|ZP_11137761.1| ATP-dependent DNA helicase RecQ [Gallaecimonas xiamenensis 3-C-1]
gi|407203006|gb|EKE72994.1| ATP-dependent DNA helicase RecQ [Gallaecimonas xiamenensis 3-C-1]
Length = 607
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 26/170 (15%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARP--DH 67
DKL GLGKD ++W ++ QLI +G + ++D+ R Q +ARP
Sbjct: 455 DKLSTWGLGKDQGHDYWVSIIRQLIHHGLV---MQDITR-----QSALVLTEAARPVLKG 506
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ PLLL + V +K + +N S AD L+ L + RK+LA
Sbjct: 507 ERPLLLA-------------VPRLVTRVKQTRATDN---SAADKVLFARLKKLRKQLADE 550
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D T+ ++A P++ A L I GV Q + +G+ L I
Sbjct: 551 FEVPPYVVFNDATLAEMASHFPTSDAELLAISGVGQTKLSRYGEPFLGLI 600
>gi|423198737|ref|ZP_17185320.1| ATP-dependent DNA helicase RecQ [Aeromonas hydrophila SSU]
gi|404629927|gb|EKB26652.1| ATP-dependent DNA helicase RecQ [Aeromonas hydrophila SSU]
Length = 611
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 24/180 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL +G+GKD S +W ++ QLI G LT+ I R + + Q
Sbjct: 447 NQRIKDHGHDKLSTYGIGKDQSHEYWMSVIRQLIHKGLLTQNIT---RNLVL-----QLT 498
Query: 61 GSARPDHQPPLLLTFNGEM---VDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
+ARP GE+ + + ISS K + L+N + D +L+ L
Sbjct: 499 EAARP--------VLRGEVKLELAVPRLQPISSR--KEKRNGLLDNANY---DKRLFKEL 545
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
RK++A PY + D T+ ++A P T+ + I+GV + G+ + I
Sbjct: 546 RALRKQIAEDEEVPPYVVFNDATLVEMAQLMPMTEDEMLAINGVGHRKLERFGEAFMDLI 605
>gi|324504342|gb|ADY41874.1| Werner syndrome ATP-dependent helicase 1 [Ascaris suum]
Length = 916
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 145/344 (42%), Gaps = 45/344 (13%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTE---TIKDVYRTVSVSQQGKQ 58
K V A K L+G G + +WK L L GY E T + T+S+S + +
Sbjct: 495 KANVYATKQKHALYGAGAKKTEAFWKELGRILRLSGYFYEQKSTYNEFAYTISLSDKADK 554
Query: 59 YLGSARP----DHQPPLLLTFNGEMVD---AEEHETISSNVGDLKSSATL---------- 101
+L + PPL+ ++VD A+++ +I + GD+ S L
Sbjct: 555 WLRMKEKELLLEPTPPLIGRV--KVVDSQGAKKYLSIPVS-GDMPQSKILGTKKKRLWKS 611
Query: 102 --ENEGFSEADMQLY-----HMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKAR 154
E E A +LY L++ R LA + + ++ I+++A RPS
Sbjct: 612 CSEYENLCNATTELYAKELERKLIDLRTNLAIQMDCGAHTIASNKCIQQLATVRPSCVEN 671
Query: 155 LANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTP 214
L I + + G L+ S++ +L++D + F +L +++ LT
Sbjct: 672 LYMIGEMPEEKRRKFGKQLVDVCVQHSKEHSLTMD--CTTESMFPSELSDAIDS---LTD 726
Query: 215 AKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLT 274
+ E ++ + LS+ +A G I E TV Y++ V G I+ D +G+
Sbjct: 727 SNREVYQNHVKGRLSLADLAQMRG----ISESTVASYVVNFVKVGLPIHM----DVLGIN 778
Query: 275 DEIFSAIQEAISKVGCK-DKLKPIKNELPDD-ITYAHIKACLVM 316
+++ + + I + G ++KPI +LP+ I Y +K +
Sbjct: 779 EDLIFTVLKTIRENGSDIIRMKPIMEKLPEAFIDYNRLKIIFTI 822
>gi|398785144|ref|ZP_10548189.1| ATP-dependent DNA helicase [Streptomyces auratus AGR0001]
gi|396994632|gb|EJJ05664.1| ATP-dependent DNA helicase [Streptomyces auratus AGR0001]
Length = 680
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ KV+ D+L + G+G D W+ + QL++ G L ++ Y T+ +++ + L
Sbjct: 459 TAKVIQFDHDQLSVFGVGDDLKEAEWRGVVRQLLAQGLLA--VEGDYGTLVLTETSGEVL 516
Query: 61 GSAR--PDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLL 118
G R P + P + + S G + A L E + L
Sbjct: 517 GGKREVPMRREP----------EKQARAARSKAKGKRAAPADLPAEA-----QPAFEALR 561
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R + A+ G Y + D T+++IA RPST L ++GV ++ + +G +L+ +
Sbjct: 562 GWRGRTAKEQGVPAYVIFHDATLREIATLRPSTTTELGTVNGVGENKLAKYGTQILEVL 620
>gi|424827731|ref|ZP_18252497.1| ATP-dependent DNA helicase RecQ [Clostridium sporogenes PA 3679]
gi|365979840|gb|EHN15886.1| ATP-dependent DNA helicase RecQ [Clostridium sporogenes PA 3679]
Length = 709
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 96/206 (46%), Gaps = 19/206 (9%)
Query: 108 EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVI 167
+AD + L + RK +++ P+ + D T+K+++ P+ + L I G+ +
Sbjct: 515 KADNEFLDRLKQLRKAISQEESVPPFMIFPDATLKELSEYMPTKEEDLLKIKGIGERKAE 574
Query: 168 THGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDG 227
+G+ ++ I + + ++ + K +++ K Y +K +G
Sbjct: 575 VYGERFIKAITEYMDEKGIDINNMDNYEGTKSNK-----DSKIKTHVLSYNLYK----EG 625
Query: 228 LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISK 287
+I++IA+ +K T+ ++L + +SEG +++ + + I + I K
Sbjct: 626 KTIKEIAD----ERNLKAITIQEHLFKCLSEGMEVDLDNF-----IKKDYEKLILDTIKK 676
Query: 288 VGCKDKLKPIKNELPDDITYAHIKAC 313
VG KLKP+K+ELP ++ Y IK+
Sbjct: 677 VGGT-KLKPVKDELPSEVDYMCIKSV 701
>gi|424790625|ref|ZP_18217151.1| DNA helicase [Xanthomonas translucens pv. graminis ART-Xtg29]
gi|422797927|gb|EKU26107.1| DNA helicase [Xanthomonas translucens pv. graminis ART-Xtg29]
Length = 602
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+K+ D+L +G+GKD + W+ + QL++ G L E D Y + ++ +Q L
Sbjct: 437 GEKIKQFSHDRLSTYGIGKDLDARAWRGVFRQLVATGLL-EVDSDAYGGLRLTDASRQVL 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R +++ E ++ GD +S + D+ L++ L +
Sbjct: 496 KGER-------------QIMMRREAPSLGRERGD-RSGSPRTGVPVQPQDLSLFNALRDL 541
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R LA+ + + D T++ IA RP++ LA++ G+ + +G L+ +
Sbjct: 542 RAGLAKEQNVPAFVIFHDSTLRNIAEQRPTSLDELAHVGGIGGTKLARYGQQLVDIV 598
>gi|431034869|ref|ZP_19491746.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1590]
gi|430563584|gb|ELB02793.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1590]
Length = 599
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
F++L +GL K+ S L LIS GYL T+ Y + V+++G Q L
Sbjct: 441 FERLSTYGLMKNQSQKETMQLIEYLISNGYLL-TVNGEYPILKVTERGIQVLKGQ----- 494
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
E V +E + + L +E E D L+ +L E R LA
Sbjct: 495 ---------EAVYRKEPKKVQQ----------LSDE---ETDT-LFEVLRELRTDLASEA 531
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I+++
Sbjct: 532 GVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKNM 583
>gi|302337379|ref|YP_003802585.1| ATP-dependent DNA helicase RecQ [Spirochaeta smaragdinae DSM 11293]
gi|301634564|gb|ADK79991.1| ATP-dependent DNA helicase RecQ [Spirochaeta smaragdinae DSM 11293]
Length = 601
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 14/164 (8%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
+G+G+D S WW + +LI + D + + ++++G++ L ++P +L
Sbjct: 449 YGVGRDKSKKWWMGIVTELIGQQMIFRD-SDRFNVLRITEEGRKLLFG----NEPFFILD 503
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYA 134
G+ + + + + T + QL L + R +LA+ PY
Sbjct: 504 PGGKAESSAKAPSFEQTAAGGAPTPT---------NTQLLTRLKQLRTRLAKEHHLPPYI 554
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
+ D+T+ ++A A P T + L I GV + + +G L IR
Sbjct: 555 IFSDKTLTQMAAALPETSSELLAISGVGEKKLAAYGSDFLAVIR 598
>gi|238918098|ref|YP_002931612.1| ATP-dependent DNA helicase RecQ, putative [Edwardsiella ictaluri
93-146]
gi|238867666|gb|ACR67377.1| ATP-dependent DNA helicase RecQ, putative [Edwardsiella ictaluri
93-146]
Length = 609
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 21/183 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S ++ + DKL ++G+G++HS+ W ++ QLI G +T+ I Q
Sbjct: 444 SARIREWGHDKLSVYGIGREHSTEHWVSILRQLIHLGLVTQNI--------ALHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE+ + V +LK+ ++ + D +L+ L +
Sbjct: 496 EAARP--------VLRGEVA----LQLAVPRVINLKARSSAQKSYGGNYDRKLFAKLRKL 543
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-H 179
RK +A PY + D T+ ++A P L +I+GV Q + G + IR H
Sbjct: 544 RKAIADEENIPPYVVFNDATLLEMAEQMPLRAGDLLSINGVGQRKLERFGAPFMTLIREH 603
Query: 180 LSQ 182
L +
Sbjct: 604 LDE 606
>gi|148258132|ref|YP_001242717.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. BTAi1]
gi|146410305|gb|ABQ38811.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. BTAi1]
Length = 625
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 16/172 (9%)
Query: 8 QF--DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARP 65
QF D+L + G+G++ + W+ QL++ G+L + Y + +++ + L
Sbjct: 454 QFGHDQLSVFGVGRELNEKQWRAALRQLVAMGHLAPD-SEAYGALKLTESARGVL----- 507
Query: 66 DHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLA 125
+ P+LL E+ + + L + D L L R ++A
Sbjct: 508 KGETPILLR--------EQTASTGRAIRSKSRRGDLVQRPAAAGDATLLARLRAWRSEIA 559
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R G Y + D TI IA ARP+T +L +I G+ + +GD LL I
Sbjct: 560 RKRGVPAYVVLHDATIDGIASARPATLGQLRDIPGIGDKKLEHYGDELLALI 611
>gi|374984916|ref|YP_004960411.1| ATP-dependent DNA helicase [Streptomyces bingchenggensis BCW-1]
gi|297155568|gb|ADI05280.1| ATP-dependent DNA helicase [Streptomyces bingchenggensis BCW-1]
Length = 611
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 10/177 (5%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ KV+ D L + G+G + W+ + QL++ G + ++ Y T+ +S+ + L
Sbjct: 440 TAKVIQFDHDALSVFGIGAELREAEWRGVVRQLLAQGLIA--VEGDYGTLVLSEGSGEVL 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
G R + E A SS+ G A + EA + L+ L
Sbjct: 498 GGQRQ-------VMLRREPERAPRAAKSSSSAGTKSGRAAAPVDLPPEA-VPLFERLRAW 549
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R A+ G Y + D T+++IA PST A L + GV ++ + +G+ +L+T+
Sbjct: 550 RGATAKEQGVPAYVIFHDATLRQIATLSPSTLAELGAVSGVGENKLAKYGEQILETV 606
>gi|411011638|ref|ZP_11387967.1| ATP-dependent DNA helicase RecQ [Aeromonas aquariorum AAK1]
Length = 611
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 24/180 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL +G+GKD S +W ++ QLI G LT+ I R + + Q
Sbjct: 447 NQRIKDHGHDKLSTYGIGKDQSHEYWMSVIRQLIHKGLLTQNIT---RNLVL-----QLT 498
Query: 61 GSARPDHQPPLLLTFNGEM---VDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
+ARP GE+ + + ISS K + L+N + D +L+ L
Sbjct: 499 EAARP--------VLRGEVKLELAVPRLQPISSR--KEKRNGLLDNANY---DKRLFKEL 545
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
RK++A PY + D T+ ++A P T+ + I+GV + G+ + I
Sbjct: 546 RALRKQIAEDEEVPPYVVFNDATLVEMAQLMPMTEDEMLAINGVGHRKLERFGEAFMDLI 605
>gi|37528437|ref|NP_931782.1| ATP-dependent DNA helicase RecQ [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787875|emb|CAE16992.1| ATP-dependent DNA helicase RecQ [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 608
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D + D L ++G+GKD S W ++ QLI G++++ I + Y + +++
Sbjct: 444 NQRIRDMRHDHLPVYGIGKDQSQEHWVSVLRQLIHLGFISQNIAN-YSALQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE+ + + +LK + D +L+ L +
Sbjct: 497 -AARP--------ILRGEV----SLKLAVPRIQNLKGRSQQSKSYSGNYDRKLFAKLRKL 543
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-H 179
RK +A P+ + D T+ ++A P T+ + I+GV Q + G+ + IR H
Sbjct: 544 RKSIADEENIPPFVVFNDVTLIEMAEQCPVTEGEMLLINGVGQRKLERFGNVFMALIREH 603
Query: 180 LSQ 182
L +
Sbjct: 604 LEE 606
>gi|407769058|ref|ZP_11116435.1| ATP-dependent DNA helicase RecQ [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407287978|gb|EKF13457.1| ATP-dependent DNA helicase RecQ [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 616
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D L ++G+GKD S W+++ QL++ GYL V V G YL
Sbjct: 452 TEKIRQNSHDDLSVYGIGKDVSQPQWRSVFRQLLAMGYL---------QVDVEGHGGVYL 502
Query: 61 G-SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
+RP GE V + S K + E +E D L+ L
Sbjct: 503 TEESRP--------VLRGEKVVEMRKDPGESKRTMTKRLRDFDTEFENEEDRDLWERLRT 554
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
R +LA PY + D+T+ ++ +P T +A+I+GV
Sbjct: 555 LRHELATSQNVPPYVIFSDRTLWEMVRFKPRTLQDMASINGV 596
>gi|33151690|ref|NP_873043.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
gi|33147911|gb|AAP95432.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
Length = 601
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 83/178 (46%), Gaps = 22/178 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + D+L ++G+GKD S+ +W ++ +QLI G + + I + + ++ ++++ + L
Sbjct: 439 NQRIREFNHDQLSVYGIGKDQSAPYWLSIIHQLIHLGLIKQNITN-HSSLQLTEEARPVL 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
S + P L T S+N A ++ + D L+ L
Sbjct: 498 RSQKLALAMPRL--------------TFSAN-------AYIQKQASVRYDKDLFARLRFL 536
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A P + + I+GV + + G L I+
Sbjct: 537 RKQIADKENIPPYVVFNDATLQEMAEYLPLSNVEMLEINGVGERKLERFGGAFLNLIK 594
>gi|119943986|ref|YP_941666.1| ATP-dependent DNA helicase RecQ [Psychromonas ingrahamii 37]
gi|119862590|gb|ABM02067.1| ATP-dependent DNA helicase RecQ [Psychromonas ingrahamii 37]
Length = 602
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 27/178 (15%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARP---D 66
DKL +GKD +W +L QLI G L + + Q +ARP
Sbjct: 449 DKLSTFAIGKDQPVEYWLSLLRQLIHCGLLMQNL--------TRGSALQLTEAARPVLKA 500
Query: 67 HQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLAR 126
QP L ++V +++ + + SN +D L+ L + RKK+A
Sbjct: 501 EQPLYLAVPRLKLVKSKDKKRLLSNF----------------SDNNLFAKLRQLRKKIAD 544
Query: 127 VTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKL 184
PY + D ++ +++ P+T+++ NI GV Q + +G L I+ ++L
Sbjct: 545 RQDLPPYIIFSDVSLSEMSEIMPTTESQFLNISGVGQIKLKKYGAEFLTLIKQYEEQL 602
>gi|293377511|ref|ZP_06623707.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium PC4.1]
gi|292643880|gb|EFF61994.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium PC4.1]
Length = 599
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
F++L +GL K+ S L LIS GYL T+ Y + V+++G Q L
Sbjct: 441 FERLSTYGLMKNQSQKETMQLIEYLISNGYLL-TVDGEYPILKVTERGIQVLKGQ----- 494
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
E V +E + + L +E E D L+ +L E R LA
Sbjct: 495 ---------EAVYRKEPKKVQQ----------LSDE---ETDT-LFEVLRELRTDLASEA 531
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I+++
Sbjct: 532 GVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKNM 583
>gi|409911451|ref|YP_006889916.1| ATP-dependent DNA helicase RecQ [Geobacter sulfurreducens KN400]
gi|298505021|gb|ADI83744.1| ATP-dependent DNA helicase RecQ [Geobacter sulfurreducens KN400]
Length = 603
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 21/181 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S++++ D+L +G+G ++ W ++ QLI GYL + + + Y + ++
Sbjct: 436 SERILALGHDRLSTYGIGAGLAAEAWGSIIRQLIHRGYLEQDLAN-YSVLKLTP------ 488
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISS---NVGDLKSSATLENEGFSEADMQLYHML 117
+ARP LL +V A+ +++ + A + +E D +L+ L
Sbjct: 489 -AARP------LLRGEENLVLAKPRLRMAAPKKEKAPRRPGAAMP----AERDEELFQEL 537
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
RK+LA PY + D T+ ++A RP+T L ++GV + + +G L+ I
Sbjct: 538 RALRKRLADDQQVPPYIIFSDATLAEMASLRPTTPEELLRVNGVGERKLGRYGAPFLEAI 597
Query: 178 R 178
R
Sbjct: 598 R 598
>gi|336122927|ref|YP_004564975.1| RecQ [Vibrio anguillarum 775]
gi|335340650|gb|AEH31933.1| RecQ [Vibrio anguillarum 775]
Length = 619
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 464 DKLTTYGIGRDHSHDYWVSIFRQLIHKGLLQQNITR-NSTLQLTEEAR------------ 510
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM + + KS L N+ + D L+ L + RK +A G
Sbjct: 511 PLL---RGEMPLELAIPRLDTAARAAKSE-KLSNKNY---DKPLFAKLRKLRKSIADEDG 563
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 564 LPPYVVFSDATLIDMAEILPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 616
>gi|420158748|ref|ZP_14665562.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea str. Holt
25]
gi|394763235|gb|EJF45355.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea str. Holt
25]
Length = 727
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 78/170 (45%), Gaps = 21/170 (12%)
Query: 8 QFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDH 67
+ D+ G+GK+ +W L Q++ G + + I + Y + ++ +GK++L S
Sbjct: 452 RIDEQEFFGIGKEKDDAYWMALLRQVMVNGLIRKDI-ETYGVMFITDKGKEFLKSV---- 506
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
++T E+H + D+ S+ + AD L ML + RKK+A+
Sbjct: 507 -SSFMMT--------EDH-SYEEEPEDINSANAV------AADPVLLEMLKDLRKKVAKQ 550
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
G P+ + D +++ +AL P T L N+ G+ + +G ++ I
Sbjct: 551 KGVPPFVVFQDPSLEDMALKYPITIQELTNVHGIGEGKAKKYGSEFVKLI 600
>gi|315223920|ref|ZP_07865765.1| ATP-dependent helicase RecQ [Capnocytophaga ochracea F0287]
gi|314946092|gb|EFS98096.1| ATP-dependent helicase RecQ [Capnocytophaga ochracea F0287]
Length = 729
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 78/170 (45%), Gaps = 21/170 (12%)
Query: 8 QFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDH 67
+ D+ G+GK+ +W L Q++ G + + I + Y + ++ +GK++L S
Sbjct: 454 RIDEQEFFGIGKEKDDAYWMALLRQVMVNGLIRKDI-ETYGVMFITDKGKEFLKSV---- 508
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
++T E+H + D+ S+ + AD L ML + RKK+A+
Sbjct: 509 -SSFMMT--------EDH-SYEEEPEDINSANAV------AADPVLLEMLKDLRKKVAKQ 552
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
G P+ + D +++ +AL P T L N+ G+ + +G ++ I
Sbjct: 553 KGVPPFVVFQDPSLEDMALKYPITIQELTNVHGIGEGKAKKYGSEFVKLI 602
>gi|257887598|ref|ZP_05667251.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,141,733]
gi|257823652|gb|EEV50584.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,141,733]
Length = 599
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
F++L +GL K+ S L LIS GYL T+ Y + V+++G Q L
Sbjct: 441 FERLSTYGLMKNQSQKETMQLIEYLISNGYLL-TVDGEYPILKVTERGIQVLKGQ----- 494
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
E V +E + + L +E E D L+ +L E R LA
Sbjct: 495 ---------EAVYRKEPKKVQQ----------LSDE---ETDT-LFEVLRELRTDLASEA 531
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I+++
Sbjct: 532 GVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKNM 583
>gi|431756463|ref|ZP_19545095.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E3083]
gi|431761716|ref|ZP_19550278.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E3548]
gi|430620317|gb|ELB57119.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E3083]
gi|430624408|gb|ELB61058.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E3548]
Length = 599
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
F++L +GL K+ S L LIS GYL T+ Y + V+++G Q L
Sbjct: 441 FERLSTYGLMKNQSQKETMQLIEYLISNGYLL-TVDGEYPILKVTERGIQVLKGQ----- 494
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
E V +E + + L +E E D L+ +L E R LA
Sbjct: 495 ---------EAVYRKEPKKVQQ----------LSDE---ETDT-LFEVLRELRTDLASEA 531
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I+++
Sbjct: 532 GVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKNM 583
>gi|329957341|ref|ZP_08297861.1| ATP-dependent DNA helicase RecQ [Bacteroides clarus YIT 12056]
gi|328523054|gb|EGF50157.1| ATP-dependent DNA helicase RecQ [Bacteroides clarus YIT 12056]
Length = 727
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 19/168 (11%)
Query: 12 LLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPL 71
L + G G W + Q + GYLT+ +++ Y + V+++GK++L H
Sbjct: 454 LEVFGSGMGEEDKTWNAVIRQALIAGYLTKEVEN-YGLLKVTEEGKKFL-----KHPKSF 507
Query: 72 LLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTA 131
+T + + + EE A G D LY ML + RKKL++
Sbjct: 508 KITEDNDFEEVEEE-------------APARGGGACAVDPALYSMLKDLRKKLSKKLEVP 554
Query: 132 PYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
PY + D +++ +A P T L NI GV +G+ + I+
Sbjct: 555 PYVIFQDPSLEAMATIYPVTLDELQNIPGVGAGKAKRYGEEFCKLIKR 602
>gi|394988714|ref|ZP_10381549.1| ATP-dependent DNA helicase RecQ [Sulfuricella denitrificans skB26]
gi|393792093|dbj|GAB71188.1| ATP-dependent DNA helicase RecQ [Sulfuricella denitrificans skB26]
Length = 616
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 15/180 (8%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ KV +L G+G+ S W ++ QL++ G L I + Y + ++++ + L
Sbjct: 443 TAKVEQFNHQQLTTFGIGQALSQTQWSSVYRQLVAAGLLNVDI-EAYGGLRLTEESRPVL 501
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQ-LYHMLLE 119
R + + L DAE + ++ + + A E F+ A+ L+ L
Sbjct: 502 ---RGEQEVWL-------RRDAEPAKKSRTSKAERGARA---REAFAGANEDPLWQALKA 548
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
+R +LAR G PY + D T+ +I RP T ++ I GV Q + +GD LQ + H
Sbjct: 549 KRTELAREQGVPPYVIFHDSTLLEILNRRPGTLREMSEITGVGQAKLAKYGDEFLQVLEH 608
>gi|431751622|ref|ZP_19540310.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2620]
gi|430615403|gb|ELB52361.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2620]
Length = 599
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
F++L +GL K+ S L LIS GYL T+ Y + V+++G Q L
Sbjct: 441 FERLSTYGLMKNQSQKETMQLIEYLISNGYLL-TVDGEYPILKVTERGIQVLKGQ----- 494
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
E V +E + + L +E E D L+ +L E R LA
Sbjct: 495 ---------EAVYRKEPKKVQQ----------LSDE---ETDT-LFEVLRELRTDLASEA 531
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I+++
Sbjct: 532 GVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKNM 583
>gi|257896094|ref|ZP_05675747.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium Com12]
gi|257832659|gb|EEV59080.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium Com12]
Length = 655
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
F++L +GL K+ S L LIS GYL T+ Y + V+++G Q L
Sbjct: 497 FERLSTYGLMKNQSQKETMQLIEYLISNGYLL-TVDGEYPILKVTERGIQVLKGQ----- 550
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
E V +E + + L +E E D L+ +L E R LA
Sbjct: 551 ---------EAVYRKEPKKVQQ----------LSDE---ETDT-LFEVLRELRTDLASEA 587
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I+++
Sbjct: 588 GVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKNM 639
>gi|330444885|ref|ZP_08308540.1| ATP-dependent DNA helicase RecQ [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489195|dbj|GAA03037.1| ATP-dependent DNA helicase RecQ [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 616
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL +G+G+D+S +W ++ QLI GYLT+ I SV Q ++
Sbjct: 449 NQRIREHGHDKLSTYGIGRDYSHEYWVSVLRQLIHLGYLTQNIS----RNSVLQLTEK-- 502
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
ARP + + L +D N+ L N + D +L+ L +
Sbjct: 503 --ARPLLRAEVSLELAVPRLD---------NIARTMKVNKLVNRQY---DKKLFAKLRKL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D ++ ++A P++ ++GV Q + +G+ L IR
Sbjct: 549 RKAIADEEDLPPYVVFNDASLMEMAERLPTSNGDFLAVNGVGQRKLEKYGEVFLGLIR 606
>gi|300721460|ref|YP_003710735.1| ATP-dependent DNA helicase [Xenorhabdus nematophila ATCC 19061]
gi|297627952|emb|CBJ88501.1| ATP-dependent DNA helicase [Xenorhabdus nematophila ATCC 19061]
Length = 608
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 20/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GK S W ++ QLI G++++ I + Y + +++
Sbjct: 444 NQRIRDFGHDKLPVYGIGKAQSQEHWMSVLRQLIHLGFISQNIAN-YSALQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
++RP GE+ + + LKS D +L+ L +
Sbjct: 497 -ASRP--------ILKGEV----SLQLAVPRIQSLKSRNQQHKSYSGNYDRKLFAKLRKL 543
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A P+ + D T+ ++A P T L I+GV Q + GD + IR
Sbjct: 544 RKSIADENNIPPFVVFNDVTLIEMAEQYPVTPNELLLINGVGQRKLERFGDAFMALIR 601
>gi|227551284|ref|ZP_03981333.1| ATP-dependent helicase [Enterococcus faecium TX1330]
gi|227179564|gb|EEI60536.1| ATP-dependent helicase [Enterococcus faecium TX1330]
Length = 653
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
F++L +GL K+ S L LIS GYL T+ Y + V+++G Q L
Sbjct: 495 FERLSTYGLMKNQSQKETMQLIEYLISNGYLL-TVDGEYPILKVTERGIQVLKGQ----- 548
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
E V +E + + L +E E D L+ +L E R LA
Sbjct: 549 ---------EAVYRKEPKKVQQ----------LSDE---ETDT-LFEVLRELRTDLASEA 585
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I+++
Sbjct: 586 GVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKNM 637
>gi|303253309|ref|ZP_07339458.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|307248139|ref|ZP_07530167.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302647991|gb|EFL78198.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|306855316|gb|EFM87491.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 602
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D+L ++G+GK+ S ++W ++ QLI G + + I V+ Q
Sbjct: 439 NQKIRQFNHDQLSVYGIGKEQSQDYWLSIIRQLIHLGLIRQNI--------VNHSALQLT 490
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
ARP ++ +E+ ++ ++A ++ + D L+ L
Sbjct: 491 EEARP-------------VLRSEKKLELAMPRLTFSATAYVQKQSSVRYDKDLFARLRFL 537
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A P ++ + +I+GV + + G L IR
Sbjct: 538 RKQIADKENIPPYVVFNDATLQEMAEFLPLSEVEMLDINGVGERKLERFGGAFLSLIR 595
>gi|82778997|ref|YP_405346.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae Sd197]
gi|81243145|gb|ABB63855.1| ATP-dependent DNA helicase [Shigella dysenteriae Sd197]
Length = 611
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + N++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLNVNGVGMRKLERFGKPFMALIR 602
>gi|46143327|ref|ZP_00135472.2| COG0514: Superfamily II DNA helicase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 604
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D+L ++G+GK+ S ++W ++ QLI G + + I V+ Q
Sbjct: 441 NQKIRQFNHDQLSVYGIGKEQSQDYWLSIIRQLIHLGLIRQNI--------VNHSALQLT 492
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
ARP ++ +E+ ++ ++A ++ + D L+ L
Sbjct: 493 EEARP-------------VLRSEKKLELAMPRLTFSATAYVQKQSSVRYDKDLFARLRFL 539
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A P ++ + +I+GV + + G L IR
Sbjct: 540 RKQIADKENIPPYVVFNDATLQEMAEFLPLSEVEMLDINGVGERKLERFGGAFLSLIR 597
>gi|425056003|ref|ZP_18459465.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 505]
gi|403032724|gb|EJY44270.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 505]
Length = 614
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
F++L +GL K+ S L LIS GYL T+ Y + V+++G Q L
Sbjct: 465 FERLSTYGLMKNQSQKETMQLIEYLISNGYLL-TVNGEYPILKVTERGIQVLKGQ----- 518
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
E V +E + + L +E E D L+ +L E R LA
Sbjct: 519 ---------EAVYRKEPKKVQQ----------LSDE---ETDT-LFEVLRELRTDLASEA 555
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I+++
Sbjct: 556 GVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKNM 607
>gi|309784542|ref|ZP_07679180.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 1617]
gi|308927648|gb|EFP73117.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 1617]
Length = 609
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + N++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLNVNGVGMRKLERFGKPFMALIR 600
>gi|345866766|ref|ZP_08818787.1| ATP-dependent DNA helicase RecQ [Bizionia argentinensis JUB59]
gi|344048686|gb|EGV44289.1| ATP-dependent DNA helicase RecQ [Bizionia argentinensis JUB59]
Length = 733
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 28/206 (13%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
GLG + +W L Q++ GYL + I + Y + + GK+++ + + ++
Sbjct: 460 FFGLGSAEDNKYWMALTRQVLVAGYLKKDI-ETYGVIKIKPAGKEFIENPKS-----FMM 513
Query: 74 T----FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
T FNGE GD A + G + AD+ L ML + RK+ A+
Sbjct: 514 TEDHLFNGE--------------GDDAIIAATKGAG-AVADVMLMKMLKDLRKRNAKRLD 558
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI-RHLSQKLNLSL 188
P+ + D +++ +AL P T L + GV +G + I +++ + +
Sbjct: 559 VPPFVIFQDPSLEDMALKYPMTLEELTYVHGVGDGKAKKYGKDFVDLIAKYVDENEIVRP 618
Query: 189 DGKVGEHTAFTR--KLHVVVNTRTKL 212
D V + T KL+++ N KL
Sbjct: 619 DDMVVKSTGMNSALKLYIIQNIDRKL 644
>gi|421781133|ref|ZP_16217606.1| ATP-dependent DNA helicase RecQ [Serratia plymuthica A30]
gi|407756805|gb|EKF66915.1| ATP-dependent DNA helicase RecQ [Serratia plymuthica A30]
Length = 610
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 21/179 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+G++ ++ W ++ QLI G++T+ I Q
Sbjct: 444 NQRIREYGHDKLPVYGIGREQTTEHWTSVLRQLIHLGFITQNI--------AMHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGF-SEADMQLYHMLLE 119
+ARP GE+ E + + LKS + + + D +L+ L +
Sbjct: 496 EAARP--------VLRGEL----ELQLAVPRIQSLKSRGSANQKSYGGNYDRKLFAKLRK 543
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P L +++GV Q + G + IR
Sbjct: 544 LRKSIADEENIPPYVVFNDATLLEMAEQMPIKAGDLLSVNGVGQRKLERFGAPFMAMIR 602
>gi|424766895|ref|ZP_18194235.1| ATP-dependent DNA helicase RecQ [Enterococcus faecalis TX1337RF]
gi|402409925|gb|EJV42341.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX1337RF]
Length = 653
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
F++L +GL K+ S L LIS GYL T+ Y + V+++G Q L
Sbjct: 495 FERLSTYGLMKNQSQKETMQLIEYLISNGYLL-TVDGEYPILKVTERGIQVLKGQ----- 548
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
E V +E + + L +E E D L+ +L E R LA
Sbjct: 549 ---------EAVYRKEPKKVQQ----------LSDE---ETDT-LFEVLRELRTDLASEA 585
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I+++
Sbjct: 586 GVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKNM 637
>gi|240949474|ref|ZP_04753814.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor NM305]
gi|240296047|gb|EER46708.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor NM305]
Length = 604
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 20/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D+L ++G+GK+ S ++W ++ QLI G + + I V+ Q
Sbjct: 438 NQKIRQFGHDQLSVYGIGKEQSQDYWVSVIRQLIHLGLIRQNI--------VNHSALQLT 489
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
ARP + + L E +G ++A + + D L+ L
Sbjct: 490 EEARPILKSQVKL------------ELALPRLGSSSATAFVSKQSSVRYDKDLFARLRFL 537
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A P T A L I+GV + + G + I+
Sbjct: 538 RKQIADTENIPPYVVFNDATLQEMAEFLPLTPAELLEINGVGERKLERFGGAFISLIK 595
>gi|423204847|ref|ZP_17191403.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AMC34]
gi|404625723|gb|EKB22538.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AMC34]
Length = 611
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 24/180 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL +G+GKD S +W ++ QLI G LT+ I R + + Q
Sbjct: 447 NQRIKDHGHDKLSTYGIGKDQSHEYWMSVIRQLIHKGLLTQNIT---RNLVL-----QLT 498
Query: 61 GSARPDHQPPLLLTFNGEM---VDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
+ARP GE+ + + ISS K + L+N + D +L+ L
Sbjct: 499 EAARP--------VLRGEVKLELAVPRLQPISSR--KEKRNGLLDNANY---DKRLFKEL 545
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
RK++A PY + D T+ ++A P T+ + I+GV + G+ + I
Sbjct: 546 RGLRKQIAEDEEVPPYVVFNDATLVEMAQLMPMTEDEMLAINGVGHRKLERFGEAFMDLI 605
>gi|347536771|ref|YP_004844196.1| ATP-dependent DNA helicase RecQ [Flavobacterium branchiophilum
FL-15]
gi|345529929|emb|CCB69959.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium branchiophilum
FL-15]
Length = 731
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 23/227 (10%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
G G + +W L Q++ G L++ I + Y V ++ +G ++ + ++
Sbjct: 459 FFGTGANKDEKYWMALLRQVLVEGMLSKDI-ETYGIVKITDKGLDFIKNPHS-----FMM 512
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
+ + E E+ ++++ KS+ T AD L ML + RKK+A+ G P+
Sbjct: 513 SEDHEYNQTEDDAIVTAS----KSTGT--------ADEALMLMLRDLRKKVAKKLGLPPF 560
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSL-DGKV 192
+ D +++ +AL P T + L+NI GV + +G + I ++ +++ D V
Sbjct: 561 VVFQDPSLEDMALKYPITLSELSNIHGVGEGKAKKYGSAFVDLISKYVEEHDITRPDDLV 620
Query: 193 GEHTAFT--RKLHVVVNTRTKLTPAKYEAWKMWHEDGL--SIQKIAN 235
+ T KL+++ N KL A K D L +++I N
Sbjct: 621 VKSTGVNSANKLYIIQNIDRKLPLDDIAASKGLSMDALLKEMEQIVN 667
>gi|126208588|ref|YP_001053813.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|303250135|ref|ZP_07336337.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307246031|ref|ZP_07528113.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307250372|ref|ZP_07532320.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307252754|ref|ZP_07534645.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307255013|ref|ZP_07536831.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307257169|ref|ZP_07538941.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307259449|ref|ZP_07541174.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307261598|ref|ZP_07543266.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|126097380|gb|ABN74208.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|302651198|gb|EFL81352.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306852966|gb|EFM85189.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306857582|gb|EFM89690.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306859786|gb|EFM91808.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306861886|gb|EFM93862.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306864331|gb|EFM96242.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306866385|gb|EFM98248.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306868721|gb|EFN00530.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 602
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D+L ++G+GK+ S ++W ++ QLI G + + I V+ Q
Sbjct: 439 NQKIRQFNHDQLSVYGIGKEQSQDYWLSIIRQLIHLGLIRQNI--------VNHSALQLT 490
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
ARP ++ +E+ ++ ++A ++ + D L+ L
Sbjct: 491 EEARP-------------VLRSEKKLELAMPRLTFSATAYVQKQSSVRYDKDLFARLRFL 537
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A P ++ + +I+GV + + G L IR
Sbjct: 538 RKQIADKENIPPYVVFNDATLQEMAEFLPLSEVEMLDINGVGERKLERFGGAFLSLIR 595
>gi|343506824|ref|ZP_08744288.1| ATP-dependent DNA helicase RecQ [Vibrio ichthyoenteri ATCC 700023]
gi|342801358|gb|EGU36830.1| ATP-dependent DNA helicase RecQ [Vibrio ichthyoenteri ATCC 700023]
Length = 612
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 27/177 (15%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL +GLG+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 457 DKLSTYGLGRDHSHDYWVSIFRQLIHKGLLFQNITR-NSTLQLTEEAR------------ 503
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSA-TLENEGFSEA--DMQLYHMLLEERKKLAR 126
PLL GEM T+ V L ++A +++ S D +L+ L + RK +A
Sbjct: 504 PLL---RGEM-------TLELAVPRLDTAARAAKSDKLSSKNYDKKLFAKLRKLRKSIAD 553
Query: 127 VTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLSQ 182
G PY + D T+ +A P++ + ++GV + + D L I+ H++Q
Sbjct: 554 EDGLPPYVVFSDATLIDMAEILPTSYGEMLAVNGVGHRKLEKYADPFLDLIQEHITQ 610
>gi|254472207|ref|ZP_05085607.1| ATP-dependent DNA helicase RecQ [Pseudovibrio sp. JE062]
gi|211958490|gb|EEA93690.1| ATP-dependent DNA helicase RecQ [Pseudovibrio sp. JE062]
Length = 612
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 31/186 (16%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S++++ D+L +G + W + QL++ G L D + + ++ G ++L
Sbjct: 449 SERIISRGHDQLSTFNIGGEFDKIKWNAITRQLLAAG-LIFADHDAHGALKMTALGMEFL 507
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEA--------DMQ 112
+E TI V L SSA +E + A D +
Sbjct: 508 ----------------------KERRTIELKVDQLASSAKMERRAKAPAKAQIEDIADQE 545
Query: 113 LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDH 172
L+ L R +LAR PY + D+T+ ++A+ RP + I GV + + G
Sbjct: 546 LFEKLRARRMELARERNVPPYVIFNDKTLIEMAVERPQRLEEMLEISGVGESKLERFGPD 605
Query: 173 LLQTIR 178
L+ IR
Sbjct: 606 FLEIIR 611
>gi|190150443|ref|YP_001968968.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307263787|ref|ZP_07545393.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189915574|gb|ACE61826.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306870908|gb|EFN02646.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 602
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D+L ++G+GK+ S ++W ++ QLI G + + I V+ Q
Sbjct: 439 NQKIRQFNHDQLSVYGIGKEQSQDYWLSIIRQLIHLGLIRQNI--------VNHSALQLT 490
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
ARP ++ +E+ ++ ++A ++ + D L+ L
Sbjct: 491 EEARP-------------VLRSEKKLELAMPRLTFSATAYVQKQSSVRYDKDLFARLRFL 537
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A P ++ + +I+GV + + G L IR
Sbjct: 538 RKQIADKENIPPYVVFNDATLQEMAEFLPLSEVEMLDINGVGERKLERFGGAFLSLIR 595
>gi|119505186|ref|ZP_01627261.1| ATP-dependent DNA helicase RecQ [marine gamma proteobacterium
HTCC2080]
gi|119458877|gb|EAW39977.1| ATP-dependent DNA helicase RecQ [marine gamma proteobacterium
HTCC2080]
Length = 599
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 21/167 (12%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
+G+GK N W+++ QL+ GYL+ + D + + + + + L
Sbjct: 451 YGVGKGLDGNQWRSVFRQLVGRGYLSVDL-DRFGALKLEEHCRALL-------------- 495
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYA 134
GE V A + + SA ++ +++L+ L E R+ LA G PY
Sbjct: 496 -KGEEVIALRQDQLQKTTRRQTKSALPDD-----INVELWEALRECRRVLAEEQGVPPYV 549
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
+ D T+ ++ + P + A + GV + + +G+ LQTIR+ S
Sbjct: 550 IFHDSTLVEMCSSLPQSMTEFAGLSGVGERKLEKYGEKFLQTIRNAS 596
>gi|270264266|ref|ZP_06192533.1| ATP-dependent DNA helicase RecQ [Serratia odorifera 4Rx13]
gi|270041915|gb|EFA15012.1| ATP-dependent DNA helicase RecQ [Serratia odorifera 4Rx13]
Length = 612
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 21/179 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+G++ ++ W ++ QLI G++T+ I Q
Sbjct: 446 NQRIREYGHDKLPVYGIGREQTTEHWTSVLRQLIHLGFITQNI--------AMHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGF-SEADMQLYHMLLE 119
+ARP GE+ E + + LKS + + + D +L+ L +
Sbjct: 498 EAARP--------VLRGEL----ELQLAVPRIQSLKSRGSANQKSYGGNYDRKLFAKLRK 545
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P L +++GV Q + G + IR
Sbjct: 546 LRKSIADEENIPPYVVFNDATLLEMAEQMPIKAGDLLSVNGVGQRKLERFGAPFMAMIR 604
>gi|386823577|ref|ZP_10110722.1| ATP-dependent DNA helicase RecQ [Serratia plymuthica PRI-2C]
gi|386379516|gb|EIJ20308.1| ATP-dependent DNA helicase RecQ [Serratia plymuthica PRI-2C]
Length = 610
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 21/179 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+G++ ++ W ++ QLI G++T+ I Q
Sbjct: 444 NQRIREYGHDKLPVYGIGREQTTEHWTSVLRQLIHLGFITQNI--------AMHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGF-SEADMQLYHMLLE 119
+ARP GE+ E + + LKS + + + D +L+ L +
Sbjct: 496 EAARP--------VLRGEL----ELQLAVPRIQSLKSRGSANQKSYGGNYDRKLFAKLRK 543
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P L +++GV Q + G + IR
Sbjct: 544 LRKSIADEENIPPYVVFNDATLLEMAEQMPIKAGDLLSVNGVGQRKLERFGAPFMAMIR 602
>gi|333925046|ref|YP_004498625.1| ATP-dependent DNA helicase RecQ [Serratia sp. AS12]
gi|333929999|ref|YP_004503577.1| ATP-dependent DNA helicase RecQ [Serratia plymuthica AS9]
gi|386326870|ref|YP_006023040.1| ATP-dependent DNA helicase RecQ [Serratia sp. AS13]
gi|333471606|gb|AEF43316.1| ATP-dependent DNA helicase RecQ [Serratia plymuthica AS9]
gi|333489106|gb|AEF48268.1| ATP-dependent DNA helicase RecQ [Serratia sp. AS12]
gi|333959203|gb|AEG25976.1| ATP-dependent DNA helicase RecQ [Serratia sp. AS13]
Length = 618
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 21/179 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+G++ ++ W ++ QLI G++T+ I Q
Sbjct: 452 NQRIREYGHDKLPVYGIGREQTTEHWTSVLRQLIHLGFITQNI--------AMHSALQLT 503
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGF-SEADMQLYHMLLE 119
+ARP GE+ E + + LKS + + + D +L+ L +
Sbjct: 504 EAARP--------VLRGEL----ELQLAVPRIQSLKSRGSANQKSYGGNYDRKLFAKLRK 551
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P L +++GV Q + G + IR
Sbjct: 552 LRKSIADEENIPPYVVFNDATLLEMAEQMPIKAGDLLSVNGVGQRKLERFGAPFMAMIR 610
>gi|359458485|ref|ZP_09247048.1| ATP-dependent DNA helicase RecQ [Acaryochloris sp. CCMEE 5410]
Length = 739
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 26/189 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV+ + D+L +G+GKD + + W+ L L+ G + ET D Y + ++ + L
Sbjct: 458 NQKVLQRRHDQLSTYGIGKDKTVDQWRLLGRTLLHQGLVAET-TDGYPVLKLNDLSWEVL 516
Query: 61 GSARPDHQP-PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
R P P+ T D S+A E +EA L+ L E
Sbjct: 517 RHQRSVFVPVPVAPT------------------QDRPSNARREE---AEA---LFQRLRE 552
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
RK+LA PY + D ++K +A +P T A I GV + + +G IR
Sbjct: 553 LRKELADQQSVPPYVIFADSSLKLMAQQQPQTMVEFAKISGVGKRKLEQYGQQFTACIRT 612
Query: 180 LSQKLNLSL 188
Q+ L +
Sbjct: 613 HRQEQGLPV 621
>gi|308051389|ref|YP_003914955.1| ATP-dependent DNA helicase RecQ [Ferrimonas balearica DSM 9799]
gi|307633579|gb|ADN77881.1| ATP-dependent DNA helicase RecQ [Ferrimonas balearica DSM 9799]
Length = 608
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++ V+D +KL G+GK+ S + W ++ QLI +G L++ D+ R++ ++
Sbjct: 445 AQPVLDRGHNKLSTWGIGKEKSHDHWLSVLRQLIHHGLLSQ---DITRSMVLTLN----- 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P GE E + K S+ S+ D +L+ L
Sbjct: 497 --------PAARAVLKGE----RSLELAEPRLALKKPSSRRSRALPSQYDRKLFAKLKAL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK+LA G PY + D T+ ++A P ++ + I+GV + + +GD L I
Sbjct: 545 RKELADEAGVPPYVVFNDATLAEMAAQLPGSRWEMLAINGVGERKLERYGDAFLTLIAEY 604
Query: 181 SQ 182
S+
Sbjct: 605 SE 606
>gi|88854818|ref|ZP_01129484.1| putative helicase [marine actinobacterium PHSC20C1]
gi|88815979|gb|EAR25835.1| putative helicase [marine actinobacterium PHSC20C1]
Length = 657
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ +V + D L G+G D S W+++ QL++ L T++ Y T++++ + L
Sbjct: 450 TPRVTQQRHDDLATFGIGSDVSEQDWRSVVRQLLAQSLL--TVQGEYGTLAITPESASVL 507
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R + E A SS+ G + + E+ L+ L
Sbjct: 508 SGGR-------TVKLRRE---APRKARGSSSAGGAAKRKVMTD--LPESATDLFENLRTW 555
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R +AR G Y + D T++ IA+ +P + A L+ I GV + + T+G +L +
Sbjct: 556 RSGVARDNGVPAYVVFADATLRGIAVTKPQSLAELSEISGVGEKKLETYGTAVLAVV 612
>gi|384171248|ref|YP_005552625.1| ATP-dependent DNA helicase RecQ [Arcobacter sp. L]
gi|345470858|dbj|BAK72308.1| ATP-dependent DNA helicase RecQ [Arcobacter sp. L]
Length = 706
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 42/235 (17%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K++D DKL ++ LG D S N W +A +LI LT L
Sbjct: 442 NQKLLDFGHDKLSVYNLGIDKSKNEWIAIADKLIDIQALT-------------------L 482
Query: 61 GSARPDHQPPLLLTFNG-EMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
G R L ++F G E++ +E I ++ + S E S D +Y
Sbjct: 483 GEFRA-----LKISFLGLEILKGKEKLFIDNDKLGIASKIKEEETELS-FDELVYERFRT 536
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
R+++A+ + Y + GD+T+K+ AL P TK + NI+GV +G+ L +
Sbjct: 537 LRREIAQESEVPAYVIFGDKTLKEFALKLPITKDEMLNINGVGLVKYEKYGETFLNLSKE 596
Query: 180 LSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIA 234
+ ++ + L+ K KLT E +++ +E G S+++IA
Sbjct: 597 IKEEFSEKLEQK---------------EPLKKLTKTYLETYELLNE-GKSVEEIA 635
>gi|336313085|ref|ZP_08568028.1| ATP-dependent DNA helicase RecQ [Shewanella sp. HN-41]
gi|335863205|gb|EGM68363.1| ATP-dependent DNA helicase RecQ [Shewanella sp. HN-41]
Length = 607
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 19/177 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S VVD DKL G+GKD S +W ++ QLI G ++ DV R S++
Sbjct: 443 SAPVVDRGHDKLTTWGIGKDKSHEYWLSVIRQLIHLGLASQ---DVTRGSSITLN----- 494
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
SARP +L + ++ AE ++++ T +++ D +L+ L
Sbjct: 495 PSARP------ILKGDVALMLAEPRISLTTT-----KRKTGQSKAPLNYDRKLFARLKLL 543
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R+ +A PY + D T+ ++A P++ + ++GV + + GD L I
Sbjct: 544 RRTIAEQQDVPPYLVFNDATLAEMAAMMPTSAGEMLAVNGVGERKLSRFGDAFLDEI 600
>gi|144900232|emb|CAM77096.1| Superfamily II DNA helicase [Magnetospirillum gryphiswaldense
MSR-1]
Length = 618
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 19/169 (11%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDHQ 68
DKL G+GKD S + W+ L Q+ + G +++ + + + +++QG + L G AR D
Sbjct: 466 DKLPTFGVGKDQSRDQWRALFRQIYAGGLISQDLSE-HGGWRITEQGGEVLRGRARID-- 522
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
V + + + D A L N+ D L L + R++LA
Sbjct: 523 -----------VRTDTLKAKGKSKRDKPVPAVLRND----IDHDLLAELKKLRRELATDQ 567
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
G YA+ D+T+ ++A RP++ A + I G+ + + +GD L+ +
Sbjct: 568 GIPAYAVFPDRTLIELAAERPTSLAEMRGIHGIGEAKLERYGDLFLEVL 616
>gi|86133525|ref|ZP_01052107.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
gi|85820388|gb|EAQ41535.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
Length = 727
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 94/202 (46%), Gaps = 20/202 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
G+GK S+ +W L Q++ Y+ + I+ Y + ++++G+ YL ++ ++
Sbjct: 454 FFGIGKSKSAAYWMALIRQILVVNYIKKEIEQ-YGVIKITKEGEAYL-----ENPTSFMM 507
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
T E+HE N + ++A ++ G D +L +L + RKK+A G P+
Sbjct: 508 T--------EDHEYNEDNDNAIITNA--KSLG-GVTDEKLVKLLKDLRKKVATKQGVPPF 556
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLSQKLNLSLDGKV 192
A+ D ++ +AL P L+ + GV + G ++ I ++ + L D +
Sbjct: 557 AVFQDPSLDDMALKYPVNLEELSKVHGVGEGKARKFGKDFVKLIETYVKENDVLRPDDLI 616
Query: 193 GEHTAFTR--KLHVVVNTRTKL 212
+ T KL+++ NT KL
Sbjct: 617 VKSTGVNSGLKLYIIQNTDRKL 638
>gi|448239974|ref|YP_007404027.1| ATP-dependent DNA helicase [Serratia marcescens WW4]
gi|445210338|gb|AGE16008.1| ATP-dependent DNA helicase [Serratia marcescens WW4]
Length = 614
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 22/182 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+G+D ++ W ++ QLI G++T+ I Q
Sbjct: 448 NQRIREYGHDKLPVYGIGRDQTTEHWTSVLRQLIHLGFITQNI--------AMHSALQLT 499
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGF-SEADMQLYHMLLE 119
+ARP GE+ + + LKS ++ + + D +L+ L +
Sbjct: 500 EAARP--------VLRGEVA----LQLAVPRIQSLKSRSSANQKSYGGNYDRKLFAKLRK 547
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR- 178
RK +A PY + D T+ ++A P L +++GV Q + G + IR
Sbjct: 548 LRKSIADEENIPPYVVFNDATLLEMAEQMPIKAGDLLSVNGVGQRKLERFGAPFMAMIRD 607
Query: 179 HL 180
HL
Sbjct: 608 HL 609
>gi|453064584|gb|EMF05549.1| ATP-dependent DNA helicase RecQ [Serratia marcescens VGH107]
Length = 610
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 22/182 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+G+D ++ W ++ QLI G++T+ I Q
Sbjct: 444 NQRIREYGHDKLPVYGIGRDQTTEHWTSVLRQLIHLGFITQNI--------AMHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGF-SEADMQLYHMLLE 119
+ARP GE+ + + LKS ++ + + D +L+ L +
Sbjct: 496 EAARP--------VLRGEVA----LQLAVPRIQSLKSRSSANQKSYGGNYDRKLFAKLRK 543
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR- 178
RK +A PY + D T+ ++A P L +++GV Q + G + IR
Sbjct: 544 LRKSIADEENIPPYVVFNDATLLEMAEQMPIKAGDLLSVNGVGQRKLERFGAPFMAMIRD 603
Query: 179 HL 180
HL
Sbjct: 604 HL 605
>gi|423203715|ref|ZP_17190283.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AER39]
gi|404612493|gb|EKB09554.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AER39]
Length = 611
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 28/182 (15%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQ---Q 55
++++ D DKL +G+GKD S +W ++ QLI G LT+ I V + ++ +
Sbjct: 447 NQRIKDHGHDKLSTYGIGKDQSHEYWMSVIRQLIHKGLLTQNITRNLVLQLTEAARPVLR 506
Query: 56 GKQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYH 115
GK L A P QP ISS K + L+N + D +L+
Sbjct: 507 GKVKLELAVPRLQP------------------ISSR--KEKRNGLLDNANY---DKRLFK 543
Query: 116 MLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQ 175
L RK++A PY + D T+ ++A P T+ + I+GV + G+ +
Sbjct: 544 ELRGLRKQIAEDEEVPPYVVFNDATLVEMAQLMPMTEDEMLAINGVGHRKLERFGEAFMD 603
Query: 176 TI 177
I
Sbjct: 604 LI 605
>gi|422340643|ref|ZP_16421584.1| ATP-dependent DNA helicase RecQ [Treponema denticola F0402]
gi|325475483|gb|EGC78664.1| ATP-dependent DNA helicase RecQ [Treponema denticola F0402]
Length = 626
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 87/181 (48%), Gaps = 13/181 (7%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
K++++ + + L + G+G + + W L L++ YL + + Y +S++Q+ K+ L
Sbjct: 457 KRILENKHNDLSVWGIGTEFNREGWFNLVRILLAEDYLVKD--EDYSVLSLTQKAKEELQ 514
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
+ + ++L FN E D + + S TL+ D + L ++R
Sbjct: 515 A-----RTSIMLPFNYEK-DNSVKKEVKEKSKPQTSENTLD-----ACDKAIVDALKQKR 563
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
++LA Y + D+TI + L +P+T A L NI G+ + +GD +L+TI S
Sbjct: 564 RELADEARVPAYIIFSDKTIFDLGLKKPATTADLDNIFGIGKAKKDKYGDIILKTISSAS 623
Query: 182 Q 182
+
Sbjct: 624 K 624
>gi|392955940|ref|ZP_10321470.1| ATP-dependent DNA helicase RecQ [Bacillus macauensis ZFHKF-1]
gi|391878182|gb|EIT86772.1| ATP-dependent DNA helicase RecQ [Bacillus macauensis ZFHKF-1]
Length = 704
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 133/318 (41%), Gaps = 52/318 (16%)
Query: 12 LLLHGLGKDHSSNWWKTLAYQLISYGYLTE-TIKDVYRTVS-VSQQGKQYLGSARPDHQP 69
L+ H L + + +QL +YG + + + K++ + + ++ +G YL + D Q
Sbjct: 428 LVAHTLHGSRAKKVQELKLHQLSTYGLMNKRSQKEILQLIDYLTAEG--YLSLS--DGQY 483
Query: 70 PLLLTFNGEMVDAEEHETISSNVGD---LKSSATLENEGFSEADMQLYHMLLEERKKLAR 126
P+LL H+ I+ G+ ++ A + SE + +L+ L RK++A+
Sbjct: 484 PVLLL---------SHKAIAVLKGEERVMRKQAQQPIQAVSERN-ELFTQLRTLRKEMAQ 533
Query: 127 VTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNL 186
PY + D T+ ++++ +P T+ + I G+ + +G+ L I +
Sbjct: 534 DAAVPPYVIFADSTLTEMSIKQPRTEHEMLKIKGMGEKKWERYGEAFLTVILEYVARAPQ 593
Query: 187 SLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQ 246
+ G+ + H + + I IAN G S Q
Sbjct: 594 PQETSSGKKNSHLDSYHFFMENK-------------------DIDSIANERGLSP----Q 630
Query: 247 TVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDIT 306
TV ++LL + EG+ + W RL + E ++E I K L +K +L +D +
Sbjct: 631 TVENHLLRSAEEGYSLPWQRL-----FSTEEEQRVKEVI-KTSDSAGLSALKEQLGEDFS 684
Query: 307 YAHIKACLVMENCGISPE 324
Y IKA L C I+ E
Sbjct: 685 YFTIKAVL----CKIALE 698
>gi|386820490|ref|ZP_10107706.1| ATP-dependent DNA helicase RecQ [Joostella marina DSM 19592]
gi|386425596|gb|EIJ39426.1| ATP-dependent DNA helicase RecQ [Joostella marina DSM 19592]
Length = 733
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 96/206 (46%), Gaps = 20/206 (9%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D+ G GK+H +++W L Q++ G L + I+ Y + ++++G +++ ++
Sbjct: 456 DERPFFGNGKEHEASYWMALIRQVLVTGMLRKEIEQ-YGVLHLNEKGNEFI-----ENPT 509
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
L+T E+H +N + ++A G + AD QL ML + RK+ A+
Sbjct: 510 SFLMT--------EDHSYTEANDDTIVTAA---KGGGAVADEQLLKMLKDLRKQQAKKLE 558
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI-RHLSQKLNLSL 188
P+ + D +++ +AL P ++NI GV G ++ I +++ + +
Sbjct: 559 VPPFVIFQDPSLEDMALKYPINLDEMSNIHGVGDGKAKKFGKPFIEFINKYVEENDIIRP 618
Query: 189 DGKVGEHTAFTR--KLHVVVNTRTKL 212
D V + T KL+V+ N KL
Sbjct: 619 DDMVVKSTGANSALKLYVIQNVDRKL 644
>gi|343083870|ref|YP_004773165.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
gi|342352404|gb|AEL24934.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
Length = 709
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 27/177 (15%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S KV +AQ +L ++G+GKD S ++WK L +QLI+ GYL + +D R + L
Sbjct: 436 SAKVTNAQ-KELSVYGIGKDRSDDFWKRLGFQLIAEGYLLQ--EDPQRPILKLSD----L 488
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ + LL E+ + E SN + D L+ L
Sbjct: 489 AWEKLKRKEKFLLAMEEEVFNLRE----PSN----------------KKDEALFERLKNV 528
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
RK LA PY + D T+ +++ P ++ L I G+ Q + +G L+ I
Sbjct: 529 RKVLADQQNVPPYIVFSDATLVEMSQRYPRSEKELIRIGGIGQLKLEKYGKTFLEEI 585
>gi|381399761|ref|ZP_09924780.1| ATP-dependent DNA helicase RecQ [Microbacterium laevaniformans
OR221]
gi|380772939|gb|EIC06624.1| ATP-dependent DNA helicase RecQ [Microbacterium laevaniformans
OR221]
Length = 679
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 17/168 (10%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D L +GLG D S W+++ QL++ G + + Y ++V +G L
Sbjct: 526 DALATYGLGADLSDQDWRSVIRQLLARGVIVA--RGEYGVLAVGDEGAAVL--------- 574
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
GE + + G + ++ ++ D L+ L R +A+ G
Sbjct: 575 ------RGETPVPLRRDVLGRGGGAPRVRKAAASDAVADGDRDLFEALRAWRAGVAKEQG 628
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
Y + GD T++ +A RP++ A L I G+ +G+ +L I
Sbjct: 629 VPAYIVFGDATLRALAEQRPASIAALDGITGIGAKKREAYGEGVLAVI 676
>gi|374385551|ref|ZP_09643054.1| ATP-dependent DNA helicase RecQ [Odoribacter laneus YIT 12061]
gi|373225253|gb|EHP47587.1| ATP-dependent DNA helicase RecQ [Odoribacter laneus YIT 12061]
Length = 735
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 20/170 (11%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL + G G + S +W T+ ++ E + Y + ++++G +L +H
Sbjct: 461 DKLEMFGSGAEKSRQFW-TMVFRRALISRFIEKDIEQYGVIKITKEGLDFL-----EHPK 514
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
+L E + EE+E E G S D L+ +L + RKK+A+
Sbjct: 515 EFMLM---EDRNFEENE-----------EKIQEKGGVSALDNTLFAILKDLRKKIAKTNN 560
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
PY + D +++ + + P T LANI GV +G ++ I+
Sbjct: 561 LPPYVIFQDPSLEDMCINYPITIEELANIQGVGTGKAQKYGKEFVEVIKQ 610
>gi|330996065|ref|ZP_08319959.1| ATP-dependent DNA helicase RecQ [Paraprevotella xylaniphila YIT
11841]
gi|329574062|gb|EGG55640.1| ATP-dependent DNA helicase RecQ [Paraprevotella xylaniphila YIT
11841]
Length = 727
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
G G +H +W + Q + GYL + I++ Y + ++ +G++++ +P+ +++
Sbjct: 457 GCGDEHEEKFWNAVIRQALIAGYLEKEIEN-YGILKLTAKGRKFM--KKPE---SFMVSE 510
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
+ E D E E +S + G G D L++ LL+ RKK+++ PY +
Sbjct: 511 DNEFEDDAE-EVVSRSGG-----------GTGVTDPALFNALLDLRKKMSKKLDVPPYVI 558
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
D +++ +A P + L NI GV +G IR
Sbjct: 559 FQDPSLEAMATMYPVSIEELQNIPGVGAGKAKRYGKEFCDLIRQ 602
>gi|431740343|ref|ZP_19529259.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2039]
gi|430603491|gb|ELB41015.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2039]
Length = 590
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 29/171 (16%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
F++L +GL K+ S L LIS GYL T+ Y + V+++G Q L
Sbjct: 441 FERLSTYGLMKNQSQKETMQLIEYLISNGYLL-TVNGEYPILKVTERGIQVLKGQ----- 494
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
E V +E + + L +E E D L+ +L E R LA
Sbjct: 495 ---------EAVYRKEPKKVQQ----------LSDE---ETDT-LFEVLRELRTDLASEA 531
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 532 GVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKN 582
>gi|262163729|ref|ZP_06031469.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus VM223]
gi|262027709|gb|EEY46374.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus VM223]
Length = 620
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 512 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADEEG 564
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 565 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 617
>gi|147919432|ref|YP_686828.1| hypothetical protein RCIX2412 [Methanocella arvoryzae MRE50]
gi|110622224|emb|CAJ37502.1| hypothetical protein RCIX2412 [Methanocella arvoryzae MRE50]
Length = 350
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 22/184 (11%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL- 60
KKV+D + D+L + G+G +S++ WK +L++ GYLT +Y ++++++ +
Sbjct: 47 KKVLDQKHDQLPVFGIGSQYSADQWKAWVNELVAQGYLTRE-PGLYPVITLNERSVEIAD 105
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGF-SEADMQLYHMLLE 119
G AR P + V + K +++EG + D++LY +L
Sbjct: 106 GIARVQLSKP-----------------VEVKVAEPK-PVEVKSEGLPATYDLKLYEVLRL 147
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR- 178
R +LA PY + + IK I P + L I G+ +G+ +L +
Sbjct: 148 WRNRLAEEQQNPPYVILTNGDIKAICSLYPMSIDELTAIKGIGPRKAQNYGEAILDMVSA 207
Query: 179 HLSQ 182
H+S+
Sbjct: 208 HVSE 211
>gi|257898730|ref|ZP_05678383.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium Com15]
gi|257836642|gb|EEV61716.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium Com15]
Length = 590
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 29/171 (16%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
F++L +GL K+ S L LIS GYL T+ Y + V+++G Q L
Sbjct: 441 FERLSTYGLMKNQSQKETMQLIEYLISNGYLL-TVNGEYPILKVTERGIQVLKGQ----- 494
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
E V +E + + L +E E D L+ +L E R LA
Sbjct: 495 ---------EAVYRKEPKKVQQ----------LSDE---ETDT-LFEVLRELRTDLASEA 531
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 532 GVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKN 582
>gi|269137489|ref|YP_003294189.1| ATP-dependent DNA helicase RecQ [Edwardsiella tarda EIB202]
gi|387866249|ref|YP_005697718.1| ATP-dependent DNA helicase RecQ [Edwardsiella tarda FL6-60]
gi|267983149|gb|ACY82978.1| ATP-dependent DNA helicase RecQ [Edwardsiella tarda EIB202]
gi|304557562|gb|ADM40226.1| ATP-dependent DNA helicase RecQ [Edwardsiella tarda FL6-60]
Length = 609
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 21/183 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S ++ + DKL ++G+G++HS+ W ++ QLI G +T+ I Q
Sbjct: 444 SARIREWGHDKLSVYGIGREHSTEHWVSILRQLIHLGLVTQNI--------ALHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE+ V +LK+ ++ + D +L+ L +
Sbjct: 496 EAARP--------VLRGEVA----LPLAVPRVINLKARSSAQKSYGGNYDRKLFAKLRKL 543
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-H 179
RK +A PY + D T+ ++A P L +I+GV Q + G + IR H
Sbjct: 544 RKAIADEENIPPYVVFNDATLLEMAEQMPLRAGDLLSINGVGQRKLERFGAPFMTLIREH 603
Query: 180 LSQ 182
L +
Sbjct: 604 LDE 606
>gi|419827881|ref|ZP_14351373.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-1A2]
gi|419831541|ref|ZP_14355010.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-61A2]
gi|422915915|ref|ZP_16950269.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-02A1]
gi|423810983|ref|ZP_17714862.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-55C2]
gi|423846250|ref|ZP_17718634.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-59A1]
gi|423878417|ref|ZP_17722265.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-60A1]
gi|423996324|ref|ZP_17739601.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-02C1]
gi|424015029|ref|ZP_17754887.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-55B2]
gi|424018140|ref|ZP_17757952.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-59B1]
gi|424623518|ref|ZP_18062004.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-50A1]
gi|424628094|ref|ZP_18066413.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-51A1]
gi|424632040|ref|ZP_18070170.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-52A1]
gi|424635129|ref|ZP_18073161.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-55A1]
gi|424638950|ref|ZP_18076857.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-56A1]
gi|424647207|ref|ZP_18084895.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-57A1]
gi|443526077|ref|ZP_21092179.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-78A1]
gi|341641612|gb|EGS66137.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-02A1]
gi|408017262|gb|EKG54777.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-50A1]
gi|408022773|gb|EKG59966.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-52A1]
gi|408028170|gb|EKG65081.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-56A1]
gi|408028453|gb|EKG65344.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-55A1]
gi|408038274|gb|EKG74625.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-57A1]
gi|408059843|gb|EKG94584.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-51A1]
gi|408624245|gb|EKK97194.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-1A2]
gi|408637259|gb|EKL09328.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-55C2]
gi|408644873|gb|EKL16546.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-60A1]
gi|408646151|gb|EKL17772.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-59A1]
gi|408652428|gb|EKL23643.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-61A2]
gi|408855314|gb|EKL95021.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-02C1]
gi|408862584|gb|EKM02091.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-55B2]
gi|408871261|gb|EKM10504.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-59B1]
gi|443455544|gb|ELT19309.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-78A1]
Length = 611
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 27/176 (15%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 456 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 502
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSA-TLENEGFS--EADMQLYHMLLEERKKLAR 126
PLL GEM +I V L ++A +++ S D +L+ L + RK +A
Sbjct: 503 PLL---RGEM-------SIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIAD 552
Query: 127 VTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
G PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 553 DEGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 608
>gi|431070842|ref|ZP_19494297.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1604]
gi|431102803|ref|ZP_19496914.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1613]
gi|430567544|gb|ELB06622.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1604]
gi|430570307|gb|ELB09274.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1613]
Length = 590
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 29/171 (16%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
F++L +GL K+ S L LIS GYL T+ Y + V+++G Q L
Sbjct: 441 FERLSTYGLMKNQSQKETMQLIEYLISNGYLL-TVNGEYPILKVTERGIQVLKGQ----- 494
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
E V +E + + L +E E D L+ +L E R LA
Sbjct: 495 ---------EAVYRKEPKKVQQ----------LSDE---ETDT-LFEVLRELRTDLASEA 531
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 532 GVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKN 582
>gi|317475725|ref|ZP_07934984.1| ATP-dependent DNA helicase RecQ [Bacteroides eggerthii 1_2_48FAA]
gi|316908108|gb|EFV29803.1| ATP-dependent DNA helicase RecQ [Bacteroides eggerthii 1_2_48FAA]
Length = 727
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 19/168 (11%)
Query: 12 LLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPL 71
L + G G W + Q + GYLT+ +++ Y + V++ GK++L H
Sbjct: 454 LEVFGSGMGEEDKTWNAVIRQALIAGYLTKEVEN-YGLLKVTEDGKKFL-----KHPKSF 507
Query: 72 LLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTA 131
+T + + + EE A G D LY ML + RKKL++
Sbjct: 508 KITEDNDFEEVEEE-------------APARGGGACAVDPALYSMLKDLRKKLSKKLEVP 554
Query: 132 PYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
PY + D +++ +A P T L NI GV +G+ + I+
Sbjct: 555 PYVIFQDPSLEAMATIYPVTLDELQNIPGVGAGKAKRYGEEFCKLIKR 602
>gi|422305600|ref|ZP_16392796.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1035(8)]
gi|408628475|gb|EKL01222.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1035(8)]
Length = 611
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 27/176 (15%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 456 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 502
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSA-TLENEGFS--EADMQLYHMLLEERKKLAR 126
PLL GEM +I V L ++A +++ S D +L+ L + RK +A
Sbjct: 503 PLL---RGEM-------SIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIAD 552
Query: 127 VTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
G PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 553 DEGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 608
>gi|241205663|ref|YP_002976759.1| ATP-dependent DNA helicase RecQ [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240859553|gb|ACS57220.1| ATP-dependent DNA helicase RecQ [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 622
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 16/164 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G GKD + W+++ QL++ G L + + + + + + R
Sbjct: 469 VFGAGKDIPARVWQSVFRQLLAMG-LIRVDHEAFGALKLEPEARSVFKHERQ-------- 519
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
F + A E T + + KS G S AD L+ L ER +A+ G PY
Sbjct: 520 VFFRKDRPASERRTKKAERSERKS-------GLSGADGSLFEALRAERMAIAKSLGVPPY 572
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D T+ A +P ++ L I GV Q + +GD L+ I
Sbjct: 573 VVFPDTTLIAFATEKPRSRKELLAISGVGQAKLERYGDAFLEII 616
>gi|116620087|ref|YP_822243.1| ATP-dependent DNA helicase RecQ [Candidatus Solibacter usitatus
Ellin6076]
gi|116223249|gb|ABJ81958.1| ATP-dependent DNA helicase, RecQ family [Candidatus Solibacter
usitatus Ellin6076]
Length = 602
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 96/237 (40%), Gaps = 42/237 (17%)
Query: 78 EMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCG 137
EM DA N + S+ T + D +L + E R + A+ G Y +
Sbjct: 392 EMCDA------CGNAPEWLSTPTATPVSLPKGDRELVALFKEWRWRTAQRMGVPAYVVLN 445
Query: 138 DQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTA 197
D +++ + RP+ L ++ G+ + +G +L A
Sbjct: 446 DASLEDLCHKRPAQLRELTSVTGIGERKAELYGVEILAVF------------------EA 487
Query: 198 FTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVS 257
+ + V T+++PA E ++ E G S +IA GR + TVV + E V
Sbjct: 488 YAKGARAEVRETTRVSPAD-ETLRLLAE-GKSFDEIAQIRGR----QRSTVVSQVAELVE 541
Query: 258 EG---FDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIK 311
G + ++W L +E I EA + G ++LKP++ LP +I+Y I+
Sbjct: 542 SGRLAYRVDW--------LGEESHEKIVEAAGRFG-SERLKPLREALPAEISYDQIR 589
>gi|218128449|ref|ZP_03457253.1| hypothetical protein BACEGG_00017 [Bacteroides eggerthii DSM 20697]
gi|217989340|gb|EEC55653.1| ATP-dependent DNA helicase RecQ [Bacteroides eggerthii DSM 20697]
Length = 727
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 19/168 (11%)
Query: 12 LLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPL 71
L + G G W + Q + GYLT+ +++ Y + V++ GK++L H
Sbjct: 454 LEVFGSGMGEEDKTWNAVIRQALIAGYLTKEVEN-YGLLKVTEDGKKFL-----KHPKSF 507
Query: 72 LLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTA 131
+T + + + EE A G D LY ML + RKKL++
Sbjct: 508 KITEDNDFEEVEEE-------------APARGGGACAVDPALYSMLKDLRKKLSKKLEVP 554
Query: 132 PYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
PY + D +++ +A P T L NI GV +G+ + I+
Sbjct: 555 PYVIFQDPSLEAMATIYPVTLDELQNIPGVGAGKAKRYGEEFCKLIKR 602
>gi|338740621|ref|YP_004677583.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium sp. MC1]
gi|337761184|emb|CCB67017.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium sp. MC1]
Length = 727
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 126/321 (39%), Gaps = 55/321 (17%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
++++ D+L ++G+GKD WK L QL + GYL S+ ++G +G
Sbjct: 459 ERIIRNGHDRLSVYGIGKDVPQATWKGLYRQLTALGYL-----------SIDEEG---VG 504
Query: 62 SARPDHQPPLLLTFNGE-MVDAEEHE--TISSNVGDLKSSATLENEGFSEADMQLYHMLL 118
S L+LT ++ EE ++ + + + + L+ L
Sbjct: 505 S--------LVLTERSRPLLRGEERFLLRVTRQSAKSSKRSASASPKVARENQPLFDALR 556
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
R+KLA PY + D+T+ +++ RP+T++ L +I G+ + +G L+ I
Sbjct: 557 AMRQKLAASAKLPPYVVAQDKTLIELSEKRPTTESALHDIMGLGASKIARYGAAFLEVIS 616
Query: 179 HLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPG 238
+ H A +L VN H GL + IA G
Sbjct: 617 QFKK------------HPALNNRLSATVNVTLAA-----------HLRGLDAETIAADRG 653
Query: 239 RSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIK 298
I+ TV +L EA+ G L + DEI +A + ++ KL P
Sbjct: 654 ----IEVSTVYGHLAEAIEAGLVTADDALKLDPAERDEIEAAFERCQTR--DTGKLGPAF 707
Query: 299 NELPDDITYAHIKACLVMENC 319
L Y +K CL+ ++
Sbjct: 708 AALDGQYDYGILK-CLLADSV 727
>gi|298500838|ref|ZP_07010640.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MAK 757]
gi|297540342|gb|EFH76401.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MAK 757]
Length = 322
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 167 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 213
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 214 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 266
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 267 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 319
>gi|85817623|gb|EAQ38797.1| ATP-dependent DNA helicase RecQ [Dokdonia donghaensis MED134]
Length = 731
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 22/202 (10%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
G+GKD +W L Q I GY+ + I + Y + ++ +G ++ +P +
Sbjct: 460 FFGIGKDQKKEYWFALLRQAIVAGYIKKDI-ETYGVIKMTPKGLSFI------EEPSSFM 512
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
+ + TI S + AD +L ML + RKK+A+ P+
Sbjct: 513 MTDDHTFGVDADNTIIS------------AQKAGGADKKLMEMLRDLRKKVAKRLDVPPF 560
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLSQKLNLSLDGKV 192
+ D +++ +A+ P T L N+ GV +G ++ I+ ++ + L D V
Sbjct: 561 VVFQDPSLQDMAIKYPITIQELGNVHGVGDGKAKKYGKDFVKLIQTYVEENDILRPDDLV 620
Query: 193 GEHTAFTR--KLHVVVNTRTKL 212
+ T KL+++ N KL
Sbjct: 621 VKSTGANSALKLYIIQNVDRKL 642
>gi|334126137|ref|ZP_08500116.1| ATP-dependent helicase RecQ [Enterobacter hormaechei ATCC 49162]
gi|333385797|gb|EGK57023.1| ATP-dependent helicase RecQ [Enterobacter hormaechei ATCC 49162]
Length = 630
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GKD S W ++ QLI G+ T+ I Q
Sbjct: 465 NQRIRDMGHDKLPVYGIGKDQSHEHWVSIIRQLIHLGFATQNI--------AQHSALQLT 516
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE+ E + V LK ++ G D +L+ L +
Sbjct: 517 EAARP--------VLRGEV----ELKLAVPRVVALKPRVMQKSYG-GNYDRKLFAKLRKL 563
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P + + + +++GV + G + IR
Sbjct: 564 RKAIADEENIPPYVVFNDATLIEMAEQMPLSASEMLSVNGVGTRKLERFGKEFMALIR 621
>gi|419958981|ref|ZP_14475038.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
cloacae GS1]
gi|388605950|gb|EIM35163.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
cloacae GS1]
Length = 609
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GKD S W ++ QLI G+ T+ I Q
Sbjct: 444 NQRIRDMGHDKLPVYGIGKDQSHEHWVSIIRQLIHLGFATQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE+ E + V LK ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGEV----ELKLAVPRVVALKPRVMQKSYG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P + + + +++GV + G + IR
Sbjct: 543 RKAIADEENIPPYVVFNDATLIEMAEQMPLSASEMLSVNGVGTRKLERFGKEFMALIR 600
>gi|192360216|ref|YP_001980649.1| ATP-dependent DNA helicase RecQ [Cellvibrio japonicus Ueda107]
gi|190686381|gb|ACE84059.1| ATP-dependent DNA helicase RecQ [Cellvibrio japonicus Ueda107]
Length = 608
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 23/174 (13%)
Query: 8 QFD--KLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSAR 64
QFD +L +G+GK S + WK++ QL++ G L + D + + +++ + YL G R
Sbjct: 449 QFDHHRLSTYGIGKHLSVDEWKSIFRQLVARGLL-DVNSDGFGGLLLNEGCRPYLRGEER 507
Query: 65 PDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKL 124
LLL E ++I+++ S + NE D L+ L RK+L
Sbjct: 508 ------LLLR--------REAKSIANSPRRANLSQDIANE-----DQSLWQALRACRKRL 548
Query: 125 ARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
A G PY + D T++++ RP T +L I GV + + G+ L +R
Sbjct: 549 AEEQGVPPYVIFHDSTLREMLEFRPLTLDQLRGITGVGESKLKRFGEEFLTVLR 602
>gi|170728871|ref|YP_001762897.1| ATP-dependent DNA helicase RecQ [Shewanella woodyi ATCC 51908]
gi|169814218|gb|ACA88802.1| ATP-dependent DNA helicase RecQ [Shewanella woodyi ATCC 51908]
Length = 608
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
V++ DKL G+GKD S +W ++ Q+I G+ ++ D+ R SV SA
Sbjct: 446 VLERGHDKLSTWGIGKDKSHEYWLSIIRQIIHLGFASQ---DITRGSSVKLNP-----SA 497
Query: 64 RPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKK 123
R +L E++ AE + S SS D +L+ L + R+K
Sbjct: 498 RS------VLKGEVELLLAEPRMVLQSTTKRRGSS----TRAPLNYDRKLFARLKQLRRK 547
Query: 124 LARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
LA PY + D T+ ++A P++ + ++GV + + GD L I
Sbjct: 548 LAEELDVPPYLVFNDATLAEMAAILPTSPGEMLAVNGVGERKLTRFGDEFLDEI 601
>gi|153216100|ref|ZP_01950274.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae 1587]
gi|124114476|gb|EAY33296.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae 1587]
Length = 620
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 27/176 (15%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSA-TLENEGFS--EADMQLYHMLLEERKKLAR 126
PLL GEM +I V L ++A +++ S D +L+ L + RK +A
Sbjct: 512 PLL---RGEM-------SIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIAD 561
Query: 127 VTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
G PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 562 DEGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 617
>gi|296535658|ref|ZP_06897834.1| ATP-dependent helicase RecQ [Roseomonas cervicalis ATCC 49957]
gi|296264009|gb|EFH10458.1| ATP-dependent helicase RecQ [Roseomonas cervicalis ATCC 49957]
Length = 590
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 18/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV D+L G+G+D WK +A QL++ G L +++ V
Sbjct: 428 TQKVTQFGHDQLPTFGVGRDLPETAWKGIARQLVAQGALDVAVENHGELVPTD------- 480
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE E ++ G + SA + AD ++ L +
Sbjct: 481 -AARP--------ILKGEQPVMFREELVAPAPG-ARRSARGTAPAAANAD-PVFAALRDW 529
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
R+++A G Y + D+T+ +IA P T LA I GV + +G+ +L+ +R
Sbjct: 530 RRRVASAQGVPSYVIFQDRTLAEIAATLPGTLDALAQIPGVGATKLERYGEAVLKVLR 587
>gi|451967267|ref|ZP_21920512.1| ATP-dependent DNA helicase RecQ [Edwardsiella tarda NBRC 105688]
gi|451313985|dbj|GAC65874.1| ATP-dependent DNA helicase RecQ [Edwardsiella tarda NBRC 105688]
Length = 609
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S ++ + DKL ++G+G++H+ W ++ QLI G +T+ I Q
Sbjct: 444 SARIRELGHDKLSVYGIGREHTIEHWVSILRQLIHLGLVTQNI--------ALHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE+ V +LK+ ++++ D +L+ L +
Sbjct: 496 EAARP--------VLRGEVA----LPLAVPRVINLKARSSVQKSYAGNYDRKLFAKLRKL 543
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P L +I+GV Q + G + IR
Sbjct: 544 RKAIADEENIPPYVVFNDATLLEMAEQMPLRAGDLLSINGVGQRKLERFGAPFMSLIR 601
>gi|424810032|ref|ZP_18235399.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus SX-4]
gi|342322670|gb|EGU18458.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus SX-4]
Length = 611
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 456 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 502
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 503 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 555
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 556 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 608
>gi|158424466|ref|YP_001525758.1| ATP-dependent DNA helicase [Azorhizobium caulinodans ORS 571]
gi|158331355|dbj|BAF88840.1| ATP-dependent DNA helicase [Azorhizobium caulinodans ORS 571]
Length = 608
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 18/170 (10%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL G+G D S + W+ + Q+++ G L V V G G + D
Sbjct: 454 DKLSTFGIGTDLSRDEWRAVVRQVVALGLLK---------VDVEGHG----GLSLSDDCR 500
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKS-SATLENEGFSEADMQLYHMLLEERKKLARVT 128
P+L + AE+ + G ++ TL + D +LY L R +LAR
Sbjct: 501 PVLRGERRVQLKAEKRTKPARATGGARAPRPTLS----TPDDERLYQKLRALRLELARAQ 556
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
PY + D T+ +I RP + A L ++ GV + + +G L+ +R
Sbjct: 557 SVPPYVIFHDATLMEIVRVRPRSLAALGDVSGVGEAKLERYGPVFLEAVR 606
>gi|325284946|ref|YP_004260736.1| ATP-dependent DNA helicase RecQ [Cellulophaga lytica DSM 7489]
gi|324320400|gb|ADY27865.1| ATP-dependent DNA helicase RecQ [Cellulophaga lytica DSM 7489]
Length = 733
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 17/164 (10%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
G+GKD + +W L Q + GYL + I+ Y + V+ G Y + L+
Sbjct: 460 FFGIGKDKDAGYWMALIRQTLVAGYLRKEIEQ-YGILRVTPMGVDYAKEPK-----SFLM 513
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
T + A + +S+ KSS + AD +L +L + RK A+ G P+
Sbjct: 514 TKDHVYSQANDDAIVSA----AKSSGGV-------ADKELAQLLRQLRKSEAKKHGVPPF 562
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D +I +AL P++ + NI GV + +G L I
Sbjct: 563 VVFQDPSIDDMALKYPTSMEDMLNIHGVGEGKAKKYGKPFLALI 606
>gi|262273198|ref|ZP_06051014.1| ATP-dependent DNA helicase RecQ [Grimontia hollisae CIP 101886]
gi|262222776|gb|EEY74085.1| ATP-dependent DNA helicase RecQ [Grimontia hollisae CIP 101886]
Length = 616
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +GLGK S +W ++ QLI GYL + I SV Q ++ ARP
Sbjct: 456 DKISTYGLGKAFSHEYWVSIFRQLIHRGYLVQNIA----RSSVLQLTEE----ARP---- 503
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
GE+ E +G L + + G D +L+ L + RK +A
Sbjct: 504 ----VLRGEIA----LELAVPRLG-LSERSKADKLGKRNYDKKLFAKLRKLRKAIADEED 554
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D T+ ++A P+++A L ++GV Q + +G+ L I
Sbjct: 555 IPPYVVFNDATLIEMAEMIPTSQAELLAVNGVGQRKLEKYGNVFLDVI 602
>gi|293571950|ref|ZP_06682964.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E980]
gi|430841071|ref|ZP_19458991.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1007]
gi|431582185|ref|ZP_19520134.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1861]
gi|431737920|ref|ZP_19526871.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1972]
gi|291607968|gb|EFF37276.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E980]
gi|430494513|gb|ELA70756.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1007]
gi|430594075|gb|ELB32045.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1861]
gi|430598222|gb|ELB35969.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1972]
Length = 590
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 29/171 (16%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
F++L +GL K+ S L LIS GYL T+ Y + V+++G Q L
Sbjct: 441 FERLSTYGLMKNQSQKETMQLIEYLISNGYLL-TVNGEYPILKVTERGIQVLKGQ----- 494
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
E V +E + + L +E E D L+ +L E R LA
Sbjct: 495 ---------EAVYRKEPKKVQQ----------LSDE---ETDT-LFEVLRELRTDLASEA 531
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 532 GVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKN 582
>gi|153831275|ref|ZP_01983942.1| ATP-dependent DNA helicase RecQ, partial [Vibrio cholerae 623-39]
gi|148873242|gb|EDL71377.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae 623-39]
Length = 411
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 256 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 302
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 303 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 355
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 356 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 408
>gi|161582034|ref|NP_229853.2| ATP-dependent DNA helicase RecQ [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|379740087|ref|YP_005332056.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae IEC224]
gi|417811271|ref|ZP_12457937.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-49A2]
gi|417815025|ref|ZP_12461666.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HCUF01]
gi|417822345|ref|ZP_12468945.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE48]
gi|418330899|ref|ZP_12941859.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-06A1]
gi|418335866|ref|ZP_12944769.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-23A1]
gi|418342438|ref|ZP_12949250.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-28A1]
gi|418347611|ref|ZP_12952349.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-43A1]
gi|418353167|ref|ZP_12955894.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-61A1]
gi|419824659|ref|ZP_14348170.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1033(6)]
gi|421315437|ref|ZP_15766011.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1032(5)]
gi|421318988|ref|ZP_15769550.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1038(11)]
gi|421323026|ref|ZP_15773559.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1041(14)]
gi|421326494|ref|ZP_15777013.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1042(15)]
gi|421330426|ref|ZP_15780911.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1046(19)]
gi|421334020|ref|ZP_15784493.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1048(21)]
gi|421337925|ref|ZP_15788367.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-20A2]
gi|421345358|ref|ZP_15795746.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-46A1]
gi|421350031|ref|ZP_15800399.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-25]
gi|422890228|ref|ZP_16932668.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-40A1]
gi|422901023|ref|ZP_16936417.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-48A1]
gi|422905194|ref|ZP_16940063.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-70A1]
gi|422911938|ref|ZP_16946476.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HFU-02]
gi|422921444|ref|ZP_16954674.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae BJG-01]
gi|422924406|ref|ZP_16957463.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-38A1]
gi|423143466|ref|ZP_17131092.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-19A1]
gi|423148448|ref|ZP_17135818.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-21A1]
gi|423152234|ref|ZP_17139456.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-22A1]
gi|423155026|ref|ZP_17142169.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-32A1]
gi|423158891|ref|ZP_17145869.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-33A2]
gi|423163555|ref|ZP_17150362.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-48B2]
gi|423729565|ref|ZP_17702898.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-17A1]
gi|423745963|ref|ZP_17711086.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-50A2]
gi|423890179|ref|ZP_17725115.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-62A1]
gi|423924715|ref|ZP_17729728.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-77A1]
gi|424000739|ref|ZP_17743841.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-17A2]
gi|424004900|ref|ZP_17747897.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-37A1]
gi|424022697|ref|ZP_17762372.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-62B1]
gi|424025715|ref|ZP_17765344.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-69A1]
gi|424585089|ref|ZP_18024695.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1030(3)]
gi|424593717|ref|ZP_18033068.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1040(13)]
gi|424597647|ref|ZP_18036858.1| ATP-dependent DNA helicase RecQ [Vibrio Cholerae CP1044(17)]
gi|424600419|ref|ZP_18039587.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1047(20)]
gi|424605327|ref|ZP_18044303.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1050(23)]
gi|424609045|ref|ZP_18047916.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-39A1]
gi|424611960|ref|ZP_18050779.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-41A1]
gi|424615844|ref|ZP_18054548.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-42A1]
gi|424620598|ref|ZP_18059135.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-47A1]
gi|424643415|ref|ZP_18081182.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-56A2]
gi|424651343|ref|ZP_18088878.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-57A2]
gi|424655296|ref|ZP_18092607.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-81A2]
gi|443502247|ref|ZP_21069249.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-64A1]
gi|443506147|ref|ZP_21072955.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-65A1]
gi|443509985|ref|ZP_21076668.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-67A1]
gi|443513827|ref|ZP_21080381.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-68A1]
gi|443517631|ref|ZP_21084066.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-71A1]
gi|443522220|ref|ZP_21088479.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-72A2]
gi|443529152|ref|ZP_21095173.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-7A1]
gi|443533890|ref|ZP_21099822.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-80A1]
gi|443540108|ref|ZP_21105959.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-81A1]
gi|340045414|gb|EGR06357.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HCUF01]
gi|340045971|gb|EGR06907.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-49A2]
gi|340049588|gb|EGR10502.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE48]
gi|341626483|gb|EGS51872.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-70A1]
gi|341628175|gb|EGS53450.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-48A1]
gi|341628480|gb|EGS53726.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-40A1]
gi|341641806|gb|EGS66325.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HFU-02]
gi|341648893|gb|EGS72908.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae BJG-01]
gi|341649090|gb|EGS73091.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-38A1]
gi|356422714|gb|EHH76185.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-06A1]
gi|356423432|gb|EHH76883.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-21A1]
gi|356427543|gb|EHH80791.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-19A1]
gi|356434248|gb|EHH87429.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-23A1]
gi|356435779|gb|EHH88928.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-22A1]
gi|356438558|gb|EHH91573.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-28A1]
gi|356444285|gb|EHH97096.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-32A1]
gi|356448332|gb|EHI01104.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-43A1]
gi|356451141|gb|EHI03843.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-33A2]
gi|356455360|gb|EHI08003.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-61A1]
gi|356456752|gb|EHI09337.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-48B2]
gi|378793597|gb|AFC57068.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae IEC224]
gi|395922926|gb|EJH33739.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1032(5)]
gi|395924346|gb|EJH35149.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1041(14)]
gi|395926264|gb|EJH37052.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1038(11)]
gi|395934825|gb|EJH45562.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1042(15)]
gi|395936113|gb|EJH46842.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1046(19)]
gi|395938083|gb|EJH48781.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1048(21)]
gi|395947099|gb|EJH57756.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-20A2]
gi|395948728|gb|EJH59366.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-46A1]
gi|395955138|gb|EJH65741.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-25]
gi|395964752|gb|EJH74949.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-56A2]
gi|395964962|gb|EJH75150.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-57A2]
gi|395967722|gb|EJH77772.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-42A1]
gi|395976765|gb|EJH86206.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-47A1]
gi|395979404|gb|EJH88755.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1030(3)]
gi|395979993|gb|EJH89302.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1047(20)]
gi|408011183|gb|EKG49013.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-39A1]
gi|408018033|gb|EKG55503.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-41A1]
gi|408038249|gb|EKG74601.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1040(13)]
gi|408045701|gb|EKG81507.1| ATP-dependent DNA helicase RecQ [Vibrio Cholerae CP1044(17)]
gi|408047549|gb|EKG83162.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1050(23)]
gi|408058109|gb|EKG92929.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-81A2]
gi|408612488|gb|EKK85827.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1033(6)]
gi|408628389|gb|EKL01142.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-17A1]
gi|408644451|gb|EKL16136.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-50A2]
gi|408659856|gb|EKL30889.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-77A1]
gi|408660756|gb|EKL31758.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-62A1]
gi|408850061|gb|EKL90047.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-37A1]
gi|408850390|gb|EKL90354.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-17A2]
gi|408875954|gb|EKM15091.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-62B1]
gi|408882282|gb|EKM21122.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-69A1]
gi|443433407|gb|ELS75915.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-64A1]
gi|443437237|gb|ELS83336.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-65A1]
gi|443441070|gb|ELS90740.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-67A1]
gi|443444882|gb|ELS98141.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-68A1]
gi|443448736|gb|ELT05353.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-71A1]
gi|443451781|gb|ELT12026.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-72A2]
gi|443459995|gb|ELT27385.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-7A1]
gi|443462939|gb|ELT33958.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-80A1]
gi|443464395|gb|ELT39058.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-81A1]
Length = 611
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 456 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 502
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 503 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 555
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 556 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 608
>gi|428201759|ref|YP_007080348.1| ATP-dependent DNA helicase RecQ [Pleurocapsa sp. PCC 7327]
gi|427979191|gb|AFY76791.1| ATP-dependent DNA helicase RecQ [Pleurocapsa sp. PCC 7327]
Length = 708
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 122/306 (39%), Gaps = 72/306 (23%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
+G+GK + WK L LI G + ET D Y + ++++ + L R
Sbjct: 456 YGIGKGKTVEEWKMLGRSLIHQGLVDET-TDGYPVLKLNKRSWEILRKMR---------- 504
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQ-LYHMLLEERKKLARVTGTAPY 133
++ V +S LE+ A+++ L L + RK++A + PY
Sbjct: 505 ------------SVQIAVTAPSNSKVLESYNPRAAEVEILLERLKQLRKQIADLHSLPPY 552
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR--HLSQKLNLSLDGK 191
+ D ++K +A +P T A I GV H + +G+ + IR + QKL +SL
Sbjct: 553 VIFSDYSLKLMAQMQPKTLQEFAKISGVGAHKLERYGEQFVSEIRAFYQEQKLPVSLP-- 610
Query: 192 VGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDY 251
+ K+T Y + GLS+++IA G + T+ +
Sbjct: 611 ---------------SNSQKMTLQLY-------QQGLSVEEIAQRRGFTI----STIYTH 644
Query: 252 LLEAV--SEGFDINWTRLCDEVGLTDEIFSAIQE----AISKVGCKDKLKPIKNELPDDI 305
L E + ++ DIN D + A QE AI G D LK +K L +
Sbjct: 645 LCELIETNQPIDIN-----------DFVVPAKQELIIQAIQTKGA-DSLKSLKEVLGESF 692
Query: 306 TYAHIK 311
Y IK
Sbjct: 693 GYEEIK 698
>gi|424658095|ref|ZP_18095363.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-16]
gi|408056663|gb|EKG91539.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-16]
Length = 611
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 456 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 502
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 503 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 555
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 556 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 608
>gi|260770707|ref|ZP_05879637.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii CIP 102972]
gi|260614288|gb|EEX39477.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii CIP 102972]
Length = 611
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +GLG+DHS ++W ++ QLI G L + I T+ ++++ + L R D
Sbjct: 456 DKISTYGLGRDHSHDYWVSIFRQLIHKGMLHQNITR-NSTLQLTEEARPLL---RGDMSL 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
L + V A + + +SS D +L+ L + RK +A G
Sbjct: 512 ELAVPRLDTAVRAAKSDKLSSK----------------NYDKKLFAKLRKLRKSIADEEG 555
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + + GV Q + + D L I+ HL+
Sbjct: 556 LPPYVVFSDATLIDMADILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHLT 608
>gi|288550569|ref|ZP_05970934.2| ATP-dependent DNA helicase RecQ [Enterobacter cancerogenus ATCC
35316]
gi|288314641|gb|EFC53579.1| ATP-dependent DNA helicase RecQ [Enterobacter cancerogenus ATCC
35316]
Length = 630
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GKD S W ++ QLI G+ T+ I Q
Sbjct: 465 NQRIRDMGHDKLPVYGIGKDQSHEHWVSIIRQLIHMGFATQNI--------AQHSALQLT 516
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE+ E + V LK ++ G D +L+ L +
Sbjct: 517 EAARP--------VLRGEI----ELKLAVPRVIALKPRVMQKSYG-GNYDRKLFAKLRKL 563
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P + + +++GV + G + IR
Sbjct: 564 RKAIADEENIPPYVVFNDATLIEMAEQMPLSAGEMLSVNGVGTRKLERFGKEFMALIR 621
>gi|448747210|ref|ZP_21728871.1| DNA helicase, ATP-dependent, RecQ type, bacterial [Halomonas
titanicae BH1]
gi|445565122|gb|ELY21234.1| DNA helicase, ATP-dependent, RecQ type, bacterial [Halomonas
titanicae BH1]
Length = 626
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 27/182 (14%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D+L +G+GKD S+N WK L QLI+ G+L SV +G
Sbjct: 457 NERITRFGHDRLSTYGIGKDLSANEWKALFRQLIASGFL-----------SVDMEG---- 501
Query: 61 GSARPDHQPPLLLTFNGE-MVDAEEHETIS--SNVGDLKSSATLENEGFS--EADMQLYH 115
++LT N + ++ E++ T+ SN +A ++G S + L+
Sbjct: 502 -------HGGIMLTANAKPVLRGEQNLTLRKPSNKPSKAKTARRGSKGASAPQGHGPLWE 554
Query: 116 MLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQ 175
L + R++LA G Y + D T+ ++ +P + A L I G+ + +G+ L
Sbjct: 555 ALRQHRRELAEAQGVPAYVIFHDATLAEMIEQKPQSLAALGAISGIGARKLADYGEGFLD 614
Query: 176 TI 177
I
Sbjct: 615 VI 616
>gi|375129367|ref|YP_004991462.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii NCTC 11218]
gi|315178536|gb|ADT85450.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii NCTC 11218]
Length = 611
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +GLG+DHS ++W ++ QLI G L + I T+ ++++ + L R D
Sbjct: 456 DKISTYGLGRDHSHDYWVSIFRQLIHKGMLHQNITR-NSTLQLTEEARPLL---RGDMSL 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
L + V A + + +SS D +L+ L + RK +A G
Sbjct: 512 ELAVPRLDTAVRAAKSDKLSSK----------------NYDKKLFAKLRKLRKSIADEEG 555
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + + GV Q + + D L I+ HL+
Sbjct: 556 LPPYVVFSDATLIDMADILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHLT 608
>gi|262190374|ref|ZP_06048635.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CT 5369-93]
gi|262033735|gb|EEY52214.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CT 5369-93]
Length = 416
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 261 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 307
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 308 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 360
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 361 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 413
>gi|209693836|ref|YP_002261764.1| ATP-dependent DNA helicase RecQ [Aliivibrio salmonicida LFI1238]
gi|208007787|emb|CAQ77909.1| ATP-dependent DNA helicase RecQ [Aliivibrio salmonicida LFI1238]
Length = 611
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 20/168 (11%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL +G+GKD+S +W ++ QLI G LT+ I T+ ++++ + L Q
Sbjct: 456 DKLSTYGIGKDNSHEYWVSIIRQLIHKGLLTQNITR-NSTLQLTEEARPILKG-----QE 509
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PL E + +A E + D QL+ L + RK +A
Sbjct: 510 PL--------------ELAVPRLDTAAKTAKSEKLNNRQYDKQLFAKLRKLRKSIADRDD 555
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D T+ +A P++ + ++GV Q + + D L I
Sbjct: 556 LPPYVVFSDATLMDMADITPTSYGEMLAVNGVGQKKLEKYADPFLDLI 603
>gi|374375555|ref|ZP_09633213.1| ATP-dependent DNA helicase RecQ [Niabella soli DSM 19437]
gi|373232395|gb|EHP52190.1| ATP-dependent DNA helicase RecQ [Niabella soli DSM 19437]
Length = 751
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 98/214 (45%), Gaps = 23/214 (10%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
G GK S +W +L QL+ G L + I++ Y + ++ G +L +P P +L
Sbjct: 478 FGAGKGQDSLFWNSLIRQLLLEGLLKKDIEE-YGVLKLTPAGTAFL--KKPKAFPVVL-- 532
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYA 134
N + +A + + + + G+ S AT D +L+ ML E R+K A+ P+
Sbjct: 533 -NNKFEEAWDDDEAAGDEGN--SVAT---------DERLFEMLKELRQKEAKKKSLPPFV 580
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGE 194
+ + ++ +A P+T A L GV++ I +G ++ I + N+
Sbjct: 581 IFLENSLLDMATLYPTTTAELEKCQGVSKGKAIRYGKPFVELISRYVEDNNIEKPDDFVM 640
Query: 195 HTAFTR---KLHVVVNTRTKL---TPAKYEAWKM 222
+ + K++++ T K+ T AK ++W+M
Sbjct: 641 KSVVNKSGNKVYIIQQTDKKIPLETIAKNKSWQM 674
>gi|424589454|ref|ZP_18028911.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1037(10)]
gi|408037483|gb|EKG73878.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1037(10)]
Length = 611
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 456 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 502
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 503 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 555
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 556 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 608
>gi|258620546|ref|ZP_05715583.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus VM573]
gi|258587061|gb|EEW11773.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus VM573]
Length = 620
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 512 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 564
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 565 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 617
>gi|83591429|ref|YP_425181.1| ATP-dependent DNA helicase RecQ [Rhodospirillum rubrum ATCC 11170]
gi|83574343|gb|ABC20894.1| ATP-dependent DNA helicase RecQ [Rhodospirillum rubrum ATCC 11170]
Length = 629
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDHQ 68
DKL G+GKDH+ N W+++ Q+ + G ++ I + R + +++ G+ L G A +
Sbjct: 471 DKLPTFGVGKDHTRNVWRSIFRQISAGGLISLDIANHGRWL-MTEAGRAVLRGQAGVALR 529
Query: 69 PPLL-LTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+L GE D E + + LE + D L+ L +R++LAR
Sbjct: 530 SDVLEAAGRGERKDKERRAS--------APAVQLEAD-----DRALFDALRAKRQELARA 576
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
Y + D+T+ ++A RP + + I G+ Q + +G L+ I
Sbjct: 577 ENVPAYVVFADRTLIELATKRPPSLDAMREIHGIGQSKLARYGAAFLEVI 626
>gi|417819060|ref|ZP_12465679.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE39]
gi|423944442|ref|ZP_17733123.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-40]
gi|423973888|ref|ZP_17736668.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-46]
gi|340042950|gb|EGR03911.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE39]
gi|408662447|gb|EKL33390.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-40]
gi|408666471|gb|EKL37258.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-46]
Length = 611
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 456 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 502
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 503 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 555
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 556 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 608
>gi|419835117|ref|ZP_14358565.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-46B1]
gi|421341784|ref|ZP_15792193.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-43B1]
gi|421353007|ref|ZP_15803345.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-45]
gi|423733466|ref|ZP_17706697.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-41B1]
gi|424007762|ref|ZP_17750719.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-44C1]
gi|395946961|gb|EJH57619.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-43B1]
gi|395955466|gb|EJH66062.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-45]
gi|408632325|gb|EKL04786.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-41B1]
gi|408859258|gb|EKL98919.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-46B1]
gi|408867878|gb|EKM07231.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-44C1]
Length = 611
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 456 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 502
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 503 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 555
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 556 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 608
>gi|262404934|ref|ZP_06081486.1| ATP-dependent DNA helicase RecQ [Vibrio sp. RC586]
gi|262348773|gb|EEY97914.1| ATP-dependent DNA helicase RecQ [Vibrio sp. RC586]
Length = 620
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 512 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 564
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 565 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 617
>gi|261213176|ref|ZP_05927459.1| ATP-dependent DNA helicase RecQ [Vibrio sp. RC341]
gi|260837594|gb|EEX64288.1| ATP-dependent DNA helicase RecQ [Vibrio sp. RC341]
Length = 620
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 512 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 564
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 565 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 617
>gi|434406622|ref|YP_007149507.1| ATP-dependent DNA helicase RecQ [Cylindrospermum stagnale PCC 7417]
gi|428260877|gb|AFZ26827.1| ATP-dependent DNA helicase RecQ [Cylindrospermum stagnale PCC 7417]
Length = 723
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 131/313 (41%), Gaps = 45/313 (14%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ + D L +G+GKD + + W+ L L+ G L +T D Y + ++
Sbjct: 442 NQKITQNEHDLLSTYGIGKDKTLDEWRMLGRSLLHQGLLEQT-ADGYSVLKLN------- 493
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQ-LYHMLLE 119
+ E++ + +I+ V T E A+ + L L
Sbjct: 494 -------------ALSWEVMKRQRTVSIAVPVA---QKVTWEEGSTKAAEAEVLVQRLRS 537
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
RK+LA PY + D T+K ++ +P T + GV H + +G+ L I+
Sbjct: 538 LRKQLADEQSVPPYVIFHDSTLKLMSQVQPQTLIDFGKLSGVGSHKLAQYGEKFLAEIKA 597
Query: 180 LSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKM-WHEDGLSIQKIANYPG 238
++ L + KV ++ ++ + +P+ E + H+ GLS+ +IA
Sbjct: 598 YRREQGLP-EQKVEYLPSY--------HSPSDNSPSYTELQTLQLHQQGLSVTEIA---- 644
Query: 239 RSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIK 298
R I+ TV+ +L + + + +++ L + E I + + +G L PIK
Sbjct: 645 RQRDIRTTTVIRHLSDLIQKNQQVDFNLL-----VPPEKQQKIWQVLETLG-DISLTPIK 698
Query: 299 NELPDDITYAHIK 311
L D+ +Y I+
Sbjct: 699 EYLGDNYSYDEIR 711
>gi|384423525|ref|YP_005632883.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae LMA3984-4]
gi|327483078|gb|AEA77485.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae LMA3984-4]
Length = 620
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 512 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 564
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 565 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 617
>gi|126662148|ref|ZP_01733147.1| ATP-dependent DNA helicase recQ [Flavobacteria bacterium BAL38]
gi|126625527|gb|EAZ96216.1| ATP-dependent DNA helicase recQ [Flavobacteria bacterium BAL38]
Length = 731
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 21/201 (10%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
G G +W L Q++ G LT+ I + Y + ++ +G+ ++ S P +
Sbjct: 461 GSGASFDEKYWMALIRQVLVDGLLTKDI-ETYGVLKMADKGEAFIKS------PTSFMMS 513
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
+ EE E I V KS+ T AD L ML + RKK A+ G P+ +
Sbjct: 514 EDHEYNEEEDEAI---VTAAKSTGT--------ADEALMSMLRDLRKKEAKKLGVPPFVI 562
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQ-TIRHLSQKLNLSLDGKVGE 194
D +++ +AL P + L+N+ GV + +G + IR++ + D V +
Sbjct: 563 FQDPSLEDMALKYPISIDELSNVHGVGEGKAKKYGKPFIDLIIRYVEDNDIIRPDDLVVK 622
Query: 195 HTAFTR--KLHVVVNTRTKLT 213
T KL+++ N KL
Sbjct: 623 STGANSGLKLYIIQNVDRKLA 643
>gi|294637968|ref|ZP_06716234.1| ATP-dependent DNA helicase RecQ, partial [Edwardsiella tarda ATCC
23685]
gi|291088871|gb|EFE21432.1| ATP-dependent DNA helicase RecQ [Edwardsiella tarda ATCC 23685]
Length = 524
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S ++ + DKL ++G+G++H+ W ++ QLI G +T+ I Q
Sbjct: 359 SARIRELGHDKLSVYGIGREHTIEHWVSILRQLIHLGLVTQNI--------ALHSALQLT 410
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE+ V +LK+ ++++ D +L+ L +
Sbjct: 411 EAARP--------VLRGEVA----LPLAVPRVINLKARSSVQKSYAGNYDRKLFAKLRKL 458
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P L +I+GV Q + G + IR
Sbjct: 459 RKAIADEENIPPYVVFNDATLLEMAEQMPLRAGDLLSINGVGQRKLERFGAPFMSLIR 516
>gi|336452159|ref|ZP_08622591.1| ATP-dependent DNA helicase RecQ [Idiomarina sp. A28L]
gi|336280975|gb|EGN74260.1| ATP-dependent DNA helicase RecQ [Idiomarina sp. A28L]
Length = 623
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ ++L +G+G DHS+ +W ++ QLI G L + I+ V +
Sbjct: 461 NQKIKQFNHEQLSTYGIGSDHSAEYWVSVLRQLIHRGLLLQDIRRHSALVLTEE------ 514
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
ARP + + LT AE ++ + + + D L+ L +
Sbjct: 515 --ARPVLRGEVALTL------AEPRLATTAQLNSVVEQG--------QHDKALFRRLKKL 558
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
RK++A G P+ + D +++++AL PST++ + GV Q + +G+ + I
Sbjct: 559 RKEIAEKEGKPPFVVFSDVSLQEMALLLPSTESEFLRVSGVGQIKLERYGEAFITEI 615
>gi|290477101|ref|YP_003470014.1| ATP-dependent DNA helicase [Xenorhabdus bovienii SS-2004]
gi|289176447|emb|CBJ83256.1| ATP-dependent DNA helicase [Xenorhabdus bovienii SS-2004]
Length = 608
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 22/179 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GK+ S W ++ QL+ G +++ I + Y + +++
Sbjct: 444 NQRIRDFGHDKLPIYGIGKEQSQEHWMSVLRQLVHLGLISQNIAN-YSALQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFS-EADMQLYHMLLE 119
+ARP GE + + LKS +N+ +S D +L+ L +
Sbjct: 497 -AARP--------VLRGE----ASLQLAVPRIQSLKSRNQ-QNKSYSGNYDRKLFAKLRK 542
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A P+ + D T+ ++A P T L I+GV Q + GD + IR
Sbjct: 543 LRKSIADENNIPPFVVFNDVTLIEMAEQCPITPNELLLINGVGQRKLERFGDVFMALIR 601
>gi|147673915|ref|YP_001218455.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O395]
gi|227116593|ref|YP_002818489.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O395]
gi|262167384|ref|ZP_06035092.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae RC27]
gi|146315798|gb|ABQ20337.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O395]
gi|227012043|gb|ACP08253.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O395]
gi|262024186|gb|EEY42879.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae RC27]
Length = 620
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 512 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 564
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 565 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 617
>gi|254226334|ref|ZP_04919924.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae V51]
gi|125621139|gb|EAZ49483.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae V51]
Length = 620
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 512 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 564
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 565 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 617
>gi|121587570|ref|ZP_01677336.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae 2740-80]
gi|121728001|ref|ZP_01681040.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae V52]
gi|153800796|ref|ZP_01955382.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MZO-3]
gi|153818546|ref|ZP_01971213.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae NCTC 8457]
gi|153821590|ref|ZP_01974257.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae B33]
gi|153825932|ref|ZP_01978599.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MZO-2]
gi|227080417|ref|YP_002808968.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae M66-2]
gi|229507002|ref|ZP_04396510.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae BX 330286]
gi|229509372|ref|ZP_04398855.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae B33]
gi|229512489|ref|ZP_04401961.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae TMA 21]
gi|229516319|ref|ZP_04405767.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae RC9]
gi|229606510|ref|YP_002877158.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MJ-1236]
gi|254851325|ref|ZP_05240675.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MO10]
gi|255744009|ref|ZP_05417963.1| ATP-dependent DNA helicase RecQ [Vibrio cholera CIRS 101]
gi|262153632|ref|ZP_06028759.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae INDRE 91/1]
gi|360036832|ref|YP_004938595.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O1 str.
2010EL-1786]
gi|440712130|ref|ZP_20892755.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae 4260B]
gi|449054605|ref|ZP_21733273.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O1 str. Inaba
G4222]
gi|9654602|gb|AAF93372.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121548208|gb|EAX58278.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae 2740-80]
gi|121629704|gb|EAX62123.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae V52]
gi|124123627|gb|EAY42370.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MZO-3]
gi|126510885|gb|EAZ73479.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae NCTC 8457]
gi|126520877|gb|EAZ78100.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae B33]
gi|149740340|gb|EDM54476.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MZO-2]
gi|227008305|gb|ACP04517.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae M66-2]
gi|229346745|gb|EEO11715.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae RC9]
gi|229350488|gb|EEO15436.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae TMA 21]
gi|229353687|gb|EEO18624.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae B33]
gi|229356107|gb|EEO21026.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae BX 330286]
gi|229369165|gb|ACQ59588.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MJ-1236]
gi|254847030|gb|EET25444.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MO10]
gi|255738274|gb|EET93665.1| ATP-dependent DNA helicase RecQ [Vibrio cholera CIRS 101]
gi|262030573|gb|EEY49210.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae INDRE 91/1]
gi|356647986|gb|AET28041.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O1 str.
2010EL-1786]
gi|439972140|gb|ELP48437.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae 4260B]
gi|448265751|gb|EMB02984.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O1 str. Inaba
G4222]
Length = 620
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 512 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 564
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 565 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 617
>gi|261854926|ref|YP_003262209.1| ATP-dependent DNA helicase RecQ [Halothiobacillus neapolitanus c2]
gi|261835395|gb|ACX95162.1| ATP-dependent DNA helicase RecQ [Halothiobacillus neapolitanus c2]
Length = 609
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 23/178 (12%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+++ DKL + G+G H+ + W+ + QLI+ GYL SV +G + G
Sbjct: 445 ERITQLGHDKLSVFGVGHAHTIDIWRGIFRQLIAQGYL-----------SVDTEG--FGG 491
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLK-SSATLENEGF-SEADMQLYHMLLE 119
A + PLL EE + +K S T + F S+ + +L+ L
Sbjct: 492 LALCERCRPLL--------RGEESLWLRQITKPVKISRKTRDRPDFVSDEESELWEALRA 543
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
RK+LA G PY + D ++ + ARP+T +I GV H T+G L I
Sbjct: 544 CRKRLATERGVPPYTIFHDASLLDMLHARPTTLDAFTDISGVGAHKRDTYGAAFLSVI 601
>gi|229527301|ref|ZP_04416694.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae 12129(1)]
gi|229335309|gb|EEO00793.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae 12129(1)]
Length = 620
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 512 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 564
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 565 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 617
>gi|266624553|ref|ZP_06117488.1| ATP-dependent DNA helicase RecQ, partial [Clostridium hathewayi DSM
13479]
gi|288863582|gb|EFC95880.1| ATP-dependent DNA helicase RecQ [Clostridium hathewayi DSM 13479]
Length = 700
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 19/168 (11%)
Query: 21 HSSNWWKTLAY---QLISYGYLTETI---KDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
H S K +Y Q+I+Y L E + D Y V ++++ + L + P+++
Sbjct: 338 HYSELAKVPSYKLRQVINYLQLNEYLAVTNDEYAVVKLTEKSRAVL-----EEGEPVVM- 391
Query: 75 FNGEMVDAEEHETISSNVGDLKS----SATLENEGFSEADMQLYHMLLEERKKLARVTGT 130
+M +EH KS +A L GFSE+D L+ L R ++A+
Sbjct: 392 ---KMAKEQEHPAKVKAEKGKKSRKGLAAGLSEVGFSESDEALFDQLRALRSEIAKEEKV 448
Query: 131 APYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
PY + D+T+ + + +P T+A + + GV + +G+ L+ IR
Sbjct: 449 PPYIVFSDKTLTHMCVIKPKTRAEMLTVTGVGEFKFEKYGERFLECIR 496
>gi|254291619|ref|ZP_04962408.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae AM-19226]
gi|150422476|gb|EDN14434.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae AM-19226]
Length = 620
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 512 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 564
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 565 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 617
>gi|20093292|ref|NP_619367.1| DNA helicase RecQ [Methanosarcina acetivorans C2A]
gi|19918649|gb|AAM07847.1| DNA helicase RecQ [Methanosarcina acetivorans C2A]
Length = 909
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 20/196 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV + +KL HG G++ + W++LA ++++ G L E Y + ++ ++ L
Sbjct: 462 NKKVRKNRHEKLKSHGNGREFTKEQWRSLASEMLNTGLL-EVSGTQYPVLKLNSMSRKIL 520
Query: 61 GSAR-----------PDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFS-- 107
+ P+ + + V A+ + I + + ++ + + S
Sbjct: 521 NGSESVELVCPEGFIPEAEEIFIPPAPAGKVKAKAEDNIQPSTTEYSTATDILKKAKSGG 580
Query: 108 ------EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
E D L+ L RKK+A PY + D ++K++A P T +I GV
Sbjct: 581 LLKSGTEHDPILFERLKALRKKIALKRNLPPYIIFSDTSLKEMASKFPQTPEEFHSITGV 640
Query: 162 NQHLVITHGDHLLQTI 177
H + +GD LQ I
Sbjct: 641 GDHKLRKYGDDFLQEI 656
>gi|288800855|ref|ZP_06406312.1| ATP-dependent DNA helicase RecQ [Prevotella sp. oral taxon 299 str.
F0039]
gi|288332316|gb|EFC70797.1| ATP-dependent DNA helicase RecQ [Prevotella sp. oral taxon 299 str.
F0039]
Length = 725
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
VV + ++L + G G D SS W + Q + GY+ + I++ Y + ++++GK+++
Sbjct: 445 VVSHRHEQLEVFGEGADESSKIWNPVIRQALISGYIKKNIEN-YGILKITEKGKKFI--- 500
Query: 64 RPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEG-FSEADMQLYHMLLEERK 122
P + D +++ +S EG S D LYH+L R
Sbjct: 501 ---KNPHSFMIVEDVDFDNIDYDAVS--------------EGKISALDEDLYHILKPLRA 543
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
K+A+ PY + D +++++A P L NI GV + +G + I
Sbjct: 544 KVAKRHNLPPYVIFQDVSLEQMATMYPVNCQDLLNIQGVGEGKAKRYGKEFWERI 598
>gi|229524849|ref|ZP_04414254.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae bv. albensis
VL426]
gi|229338430|gb|EEO03447.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae bv. albensis
VL426]
Length = 620
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 512 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 564
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 565 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 617
>gi|344942347|ref|ZP_08781635.1| ATP-dependent DNA helicase RecQ [Methylobacter tundripaludum SV96]
gi|344263539|gb|EGW23810.1| ATP-dependent DNA helicase RecQ [Methylobacter tundripaludum SV96]
Length = 712
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/313 (20%), Positives = 133/313 (42%), Gaps = 51/313 (16%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++V A DKL G+G D W ++ QL++ G L D + + +++ + L
Sbjct: 438 TERIVKAAHDKLSTFGIGVDIEEQQWHSVFRQLVARG-LVAVDFDRFGALQLTESCRPVL 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R + Q L E V K S E D L++ L +
Sbjct: 497 ---RGEQQLMLRKDLKAEKV---------------KGSKKTGREFAKTDDTLLWNALRAK 538
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RK +A PY + D T+ + A+P+ + ++ + G+ + + + D L I
Sbjct: 539 RKMIADAQDVPPYVIFHDATLMAMLEAKPTNRQQMGLLSGIGERKLELYADEFLAVI--- 595
Query: 181 SQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRS 240
S+ ++++ +G +G L+ E+ ++ G S+++IA +
Sbjct: 596 SEFVDINKNGPIG------------------LSDTMAESVALFRL-GYSVKQIA----QQ 632
Query: 241 APIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKV--GCKDKLKPIK 298
+++ T+ +L +++ +G + L D V L ++ S I+EAI + ++ LKP+
Sbjct: 633 RELQDTTIYGHLAQSLEQGMLV----LADVVELPEQEISRIEEAIINLPEDQRNALKPVY 688
Query: 299 NELPDDITYAHIK 311
+ +Y ++
Sbjct: 689 DLFEGQYSYGVLR 701
>gi|325268722|ref|ZP_08135351.1| ATP-dependent helicase RecQ [Prevotella multiformis DSM 16608]
gi|324988966|gb|EGC20920.1| ATP-dependent helicase RecQ [Prevotella multiformis DSM 16608]
Length = 727
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 6 DAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARP 65
D + D+L G G+D W + Q + GYL + +++ Y + ++ G++++ S
Sbjct: 449 DHKHDELEEFGAGEDEDPKIWNPVIRQALLAGYLEKDVEN-YGLLRLTAAGRRFMKSPES 507
Query: 66 DHQPPLLLTFNGEMVD-AEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKL 124
++ + E D ++ E ++ G + D +L+ ML R+K+
Sbjct: 508 -----FMIVMDAEFKDDGDDEEPVA---------------GTAVLDPELFSMLKNLRRKI 547
Query: 125 ARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
AR PY + D +++++A+ P + L NI GV +G + I+
Sbjct: 548 ARKLEIPPYVIFQDVSLEQMAMMYPVNEQELQNIQGVGAGKAKRYGKEFCELIKQ 602
>gi|297581635|ref|ZP_06943557.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae RC385]
gi|297534042|gb|EFH72881.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae RC385]
Length = 620
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 512 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 564
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 565 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 617
>gi|374993595|ref|YP_004969094.1| ATP-dependent DNA helicase RecQ [Desulfosporosinus orientis DSM
765]
gi|357211961|gb|AET66579.1| ATP-dependent DNA helicase RecQ [Desulfosporosinus orientis DSM
765]
Length = 704
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 22/202 (10%)
Query: 113 LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDH 172
L+H L R+++A PY + D T++++A P L I GV + + +G+
Sbjct: 521 LFHRLRALRREIAMRENLPPYMIFSDSTLREMAQNCPLNNRALLQISGVGERKLEKYGNE 580
Query: 173 LLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQK 232
L I S G+V A + K + V T+ + + +M+ E G S+ +
Sbjct: 581 FLAVIS--------SYCGEVKSAEAPSEKSYTPV---TEKVASHLQTLRMYQE-GYSLDE 628
Query: 233 IANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD 292
IA + PI TV ++L+ +G + W E D I +AI++ VG +
Sbjct: 629 IAKI-RKVTPI---TVQNHLVRCGMDGEVVPWDEFIPEEQ-EDNILAAIRQ----VG-GE 678
Query: 293 KLKPIKNELPDDITYAHIKACL 314
+L+PIK+ + DD+ + I+A +
Sbjct: 679 RLRPIKDIVGDDVEWFTIRAVI 700
>gi|455737381|ref|YP_007503647.1| ATP-dependent DNA helicase RecQ [Morganella morganii subsp.
morganii KT]
gi|455418944|gb|AGG29274.1| ATP-dependent DNA helicase RecQ [Morganella morganii subsp.
morganii KT]
Length = 608
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 22/182 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+GKD S W ++ QLI G +T+ I + Y + +++
Sbjct: 444 NQRIREYGHDKLAVYGIGKDKSQEHWVSVLRQLIHLGLITQNIAN-YSALQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
SARP GE+ + + ++K T + G D +L+ L +
Sbjct: 497 -SARP--------VLRGEV----PLQLAVPRIQNIKPRQTARSYG-GNYDKKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-H 179
RK +A P+ + D T+ ++A P L I+GV + + GD + IR H
Sbjct: 543 RKSIADEENIPPFVVFNDATLIEMAEQCPVRANDLLLINGVGERKLERFGDAFMALIREH 602
Query: 180 LS 181
L+
Sbjct: 603 LT 604
>gi|165976542|ref|YP_001652135.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|165876643|gb|ABY69691.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
Length = 602
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 79/178 (44%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D+L ++G+GK+ S ++W ++ QLI G + + I V+ Q
Sbjct: 439 NQKIRQFNHDQLSVYGIGKEQSQDYWLSIIRQLIHLGLIRQNI--------VNHSALQLT 490
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
ARP ++ +E+ ++ ++A ++ + D L+ L
Sbjct: 491 EEARP-------------VLRSEKKLELAMPRLTFSATAYVQKQSSVRYDKDLFARLRFL 537
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A P ++ + I+GV + + G L IR
Sbjct: 538 RKQIADKENIPPYVVFNDATLQEMAEFLPLSEVEMLYINGVGERKLERFGGAFLSLIR 595
>gi|407692774|ref|YP_006817563.1| ATP-dependent DNA helicase RecQ [Actinobacillus suis H91-0380]
gi|407388831|gb|AFU19324.1| ATP-dependent DNA helicase RecQ [Actinobacillus suis H91-0380]
Length = 602
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D+L ++G+GK+ S ++W ++ QLI G + + I V+ Q
Sbjct: 439 NQKIRQFNHDQLSVYGIGKEQSQDYWLSIIRQLIHLGLIRQNI--------VNHSALQLT 490
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
ARP ++ +E+ ++ ++A ++ + D L+ L
Sbjct: 491 EEARP-------------VLRSEKKLELAMPRLTFSATAYVQKQTSVRYDKDLFARLRFL 537
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A P T+ + +I+GV + + G L I+
Sbjct: 538 RKQIADKENIPPYVVFNDATLQEMAEFLPLTEVEMLDINGVGERKLERFGGAFLSLIQ 595
>gi|229521104|ref|ZP_04410525.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae TM 11079-80]
gi|229341989|gb|EEO06990.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae TM 11079-80]
Length = 620
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 512 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 564
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 565 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 617
>gi|256419821|ref|YP_003120474.1| ATP-dependent DNA helicase RecQ [Chitinophaga pinensis DSM 2588]
gi|256034729|gb|ACU58273.1| ATP-dependent DNA helicase RecQ [Chitinophaga pinensis DSM 2588]
Length = 733
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 84/177 (47%), Gaps = 22/177 (12%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
++ Q ++L + G GK+H +++W +L Q++ + + I++ Y + ++ +G +L
Sbjct: 449 QITTYQHNQLEVFGEGKEHDAHFWNSLIRQMMLEDLIEKDIEE-YGLLKITDKGHAFL-- 505
Query: 63 ARPDHQPP--LLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
Q P ++++ N + + GD A E + AD L+ ML +
Sbjct: 506 -----QEPYSIMVSLNHQF---------EEDGGDEDEVAA---ESQASADTALFEMLKDL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
RKK+A+ P+ + + +++ +A P+T L I GV++ I +G + I
Sbjct: 549 RKKVAKEKNLPPFVIFLETSLEDMATQYPTTVQELEKIQGVSKGKAIRYGKQFVDVI 605
>gi|421491516|ref|ZP_15938879.1| RECQ [Morganella morganii subsp. morganii KT]
gi|400193950|gb|EJO27083.1| RECQ [Morganella morganii subsp. morganii KT]
Length = 562
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 22/182 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+GKD S W ++ QLI G +T+ I + Y + +++
Sbjct: 398 NQRIREYGHDKLAVYGIGKDKSQEHWVSVLRQLIHLGLITQNIAN-YSALQLTE------ 450
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
SARP GE+ + + ++K T + G D +L+ L +
Sbjct: 451 -SARP--------VLRGEV----PLQLAVPRIQNIKPRQTARSYG-GNYDKKLFAKLRKL 496
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-H 179
RK +A P+ + D T+ ++A P L I+GV + + GD + IR H
Sbjct: 497 RKSIADEENIPPFVVFNDATLIEMAEQCPVRANDLLLINGVGERKLERFGDAFMALIREH 556
Query: 180 LS 181
L+
Sbjct: 557 LT 558
>gi|323357581|ref|YP_004223977.1| superfamily II DNA helicase [Microbacterium testaceum StLB037]
gi|323273952|dbj|BAJ74097.1| superfamily II DNA helicase [Microbacterium testaceum StLB037]
Length = 678
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D+L +GLG D S W+++ QL++ G + + Y T+++S+ G R +
Sbjct: 524 DRLSTYGLGADLSDQDWRSVIRQLLARGIIVA--QGDYGTLALSEASA---GVLRGETPV 578
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PL DA + KSSA + + D L+ L R + AR G
Sbjct: 579 PL-------RRDALGRTGGGGSSRQRKSSA----DDVAPGDRDLFEALRAWRAEKAREQG 627
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
Y + GD T++ IA ARP + L I G+ +GD +L +
Sbjct: 628 VPAYIVFGDATLRAIAAARPGSVDDLDGITGIGAKKREAYGDGILTVV 675
>gi|410086312|ref|ZP_11283024.1| ATP-dependent DNA helicase RecQ [Morganella morganii SC01]
gi|409767157|gb|EKN51237.1| ATP-dependent DNA helicase RecQ [Morganella morganii SC01]
Length = 608
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 22/182 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+GKD S W ++ QLI G +T+ I + Y + +++
Sbjct: 444 NQRIREYGHDKLAVYGIGKDKSQEHWVSVLRQLIHLGLITQNIAN-YSALQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
SARP GE+ + + ++K T + G D +L+ L +
Sbjct: 497 -SARP--------VLRGEV----PLQLAVPRIQNIKPRQTARSYG-GNYDKKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-H 179
RK +A P+ + D T+ ++A P L I+GV + + GD + IR H
Sbjct: 543 RKSIADEENIPPFVVFNDATLIEMAEQCPVRANDLLLINGVGERKLERFGDAFMALIREH 602
Query: 180 LS 181
L+
Sbjct: 603 LT 604
>gi|424871658|ref|ZP_18295320.1| ATP-dependent DNA helicase RecQ [Rhizobium leguminosarum bv. viciae
WSM1455]
gi|393167359|gb|EJC67406.1| ATP-dependent DNA helicase RecQ [Rhizobium leguminosarum bv. viciae
WSM1455]
Length = 622
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 16/164 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G GKD + W+++ QL++ G L + + + + + + R +
Sbjct: 469 VFGAGKDIPARVWQSVFRQLLAMG-LIRVDHEAFGALKLEPEARAVFKHERQ-------V 520
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
F + +E K+ + G S AD L+ L ER +A+ G PY
Sbjct: 521 FFRKDRPTSERRAK--------KAERSERKSGLSGADGSLFEALRAERMAIAKSLGVPPY 572
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D T+ A RP ++ L I GV Q + +GD L+ I
Sbjct: 573 VVFPDTTLIAFATERPRSRKELLAISGVGQAKLERYGDAFLEII 616
>gi|386348110|ref|YP_006046358.1| ATP-dependent DNA helicase RecQ [Rhodospirillum rubrum F11]
gi|346716546|gb|AEO46561.1| ATP-dependent DNA helicase RecQ [Rhodospirillum rubrum F11]
Length = 597
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDHQ 68
DKL G+GKDH+ N W+++ Q+ + G ++ I + R + +++ G+ L G A +
Sbjct: 439 DKLPTFGVGKDHTRNVWRSIFRQISAGGLISLDIANHGRWL-MTEAGRAVLRGQAGVALR 497
Query: 69 PPLL-LTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+L GE D E + + LE + D L+ L +R++LAR
Sbjct: 498 SDVLEAAGRGERKDKERRAS--------APAVQLEAD-----DRALFDALRAKRQELARA 544
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
Y + D+T+ ++A RP + + I G+ Q + +G L+ I
Sbjct: 545 ENVPAYVVFADRTLIELATKRPPSLDAMREIHGIGQSKLARYGAAFLEVI 594
>gi|405381964|ref|ZP_11035786.1| ATP-dependent DNA helicase RecQ [Rhizobium sp. CF142]
gi|397321452|gb|EJJ25868.1| ATP-dependent DNA helicase RecQ [Rhizobium sp. CF142]
Length = 621
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 16/164 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G GKD + W+++ QL++ G L + + + + + + R +
Sbjct: 469 VFGAGKDIAVRTWQSVYRQLMAMG-LIRVDHEAFGALKLEPEARAVFKRERE-------V 520
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
F + +E K+ G S AD L+ L ER +A+ G PY
Sbjct: 521 FFRKDRAPSERRAK--------KTERAERRTGLSGADGTLFEALRAERMSIAKSLGVPPY 572
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D T+ A RP ++ L I GV Q + +GD L I
Sbjct: 573 VVFPDTTLIAFATERPRSRKELLGISGVGQSKLERYGDAFLDII 616
>gi|365901690|ref|ZP_09439521.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. STM 3843]
gi|365417574|emb|CCE12063.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. STM 3843]
Length = 621
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 16/173 (9%)
Query: 8 QF--DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARP 65
QF DKL + G+G++ + W+ QL++ G+L + + + ++ + L
Sbjct: 454 QFGHDKLSVFGIGRELNEKQWRAALRQLVAMGHLAPD-SEAFGALKLTDTSRSVL----- 507
Query: 66 DHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLA 125
+ + E +A S GDL + AD L L R ++A
Sbjct: 508 --KGETAVMLREETANAARAIRSRSRRGDLVARPG------QAADAPLLASLRAWRSEVA 559
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
R G Y + D TI IA ARP+T +L +I G+ + +GD LL +R
Sbjct: 560 RKRGVPAYVVLHDTTIDGIAAARPATLGQLRDIPGIGDKKLEHYGDELLALVR 612
>gi|325298909|ref|YP_004258826.1| ATP-dependent DNA helicase RecQ [Bacteroides salanitronis DSM
18170]
gi|324318462|gb|ADY36353.1| ATP-dependent DNA helicase RecQ [Bacteroides salanitronis DSM
18170]
Length = 606
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 7/181 (3%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S V++ +DKL +G G+D + W+ Q+++ GY E + + +++ GK+ L
Sbjct: 431 SADVIERGYDKLKTYGAGRDVPARDWQDYLLQMLNLGYF-EVAYNEKNHLKITEAGKKVL 489
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
H+ L E + T + + A + F + D L+ L
Sbjct: 490 FG----HEQAQLAVIKRE--EYPSKTTRRKKKTEHPAPAPVIPLAFEDEDQSLFEALRAL 543
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
RKKLA Y + D+ + +A ++P+T I G+ ++ +G +Q IR
Sbjct: 544 RKKLADQQAIPAYIVLSDKVLHLLASSKPTTIEAFGEISGIGEYKKERYGKDFIQVIRRF 603
Query: 181 S 181
+
Sbjct: 604 T 604
>gi|294630810|ref|ZP_06709370.1| RecQ family ATP-dependent DNA helicase [Streptomyces sp. e14]
gi|292834143|gb|EFF92492.1| RecQ family ATP-dependent DNA helicase [Streptomyces sp. e14]
Length = 687
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 9/181 (4%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ KV+ D+L + G+G++ + W+ + QL++ G L ++ Y T+++++ L
Sbjct: 444 TAKVIQFDHDQLSVFGIGEELTEGEWRGVVRQLLAQGLL--AVEGEYGTLTLTEASGAVL 501
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R + + PL A SS G K E EA + + L
Sbjct: 502 ---RREREVPLR---KEPKRPAAAKSGASSGSGRAKGGKAAVAE-LPEALLPAFEALRAW 554
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R + AR G Y + D T+++I P++ A L + GV + + T+G+ +L + L
Sbjct: 555 RAEQAREQGVPAYVIFHDATLREIVTVWPTSVAELGTVGGVGEKKLATYGEGVLGVLESL 614
Query: 181 S 181
Sbjct: 615 G 615
>gi|418938640|ref|ZP_13492125.1| ATP-dependent DNA helicase RecQ [Rhizobium sp. PDO1-076]
gi|375054623|gb|EHS50962.1| ATP-dependent DNA helicase RecQ [Rhizobium sp. PDO1-076]
Length = 619
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 14/164 (8%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G GK+ +S W+++ QL++ G L + + + + + R H
Sbjct: 465 VFGAGKELASKTWQSVYRQLLAAG-LVSVDHSAFGALKLEPEARSVFKREREVH------ 517
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
F + ++ + S++V + A L+ ADM+L+ L +R ++A+ G PY
Sbjct: 518 -FRKDRPTTDK-ASRSTSVSSANAKAGLDG-----ADMELFQALRAKRMEIAKDLGVPPY 570
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D T+ A RPS + + +I GV Q + +G+ L+ I
Sbjct: 571 VVFPDTTLVAFATERPSDEDEMLDISGVGQSKLERYGEAFLEVI 614
>gi|343497191|ref|ZP_08735268.1| ATP-dependent DNA helicase RecQ [Vibrio nigripulchritudo ATCC
27043]
gi|342819758|gb|EGU54595.1| ATP-dependent DNA helicase RecQ [Vibrio nigripulchritudo ATCC
27043]
Length = 612
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 20/169 (11%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL +G+G++HS ++W ++ QLI G LT+ I T+ ++++ + L +P
Sbjct: 457 DKLSTYGIGREHSHDYWVSIIRQLIHKGLLTQNITR-NSTLQLTEEARPVLRGEQP---- 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
L +D S L N+ + D +L+ L + RK +A G
Sbjct: 512 ---LELAVPRLDTAAKSA---------KSDKLINKHY---DKKLFAKLRKLRKSIADEDG 556
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
PY + D T+ +A P++ + ++GV Q + + D L I+
Sbjct: 557 LPPYVVFSDATLIDMADILPTSYGEMLAVNGVGQRKLEKYADPFLDLIQ 605
>gi|193212332|ref|YP_001998285.1| ATP-dependent DNA helicase RecQ [Chlorobaculum parvum NCIB 8327]
gi|193085809|gb|ACF11085.1| ATP-dependent DNA helicase RecQ [Chlorobaculum parvum NCIB 8327]
Length = 609
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 81/180 (45%), Gaps = 24/180 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ D+L ++G+GK H +W+ L L++ ++ L
Sbjct: 445 NQKILEFGHDRLKVYGIGKGHDKKFWRRLIDDLMA---------------------RKAL 483
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGF---SEADMQLYHML 117
G + + P LL ++ EE + SA + G SEA+ QL+ L
Sbjct: 484 GRSEGLYPVPYLLEGGVRILKGEEKVEMVRIKAKKGKSAAAKRGGLDALSEAEKQLFEQL 543
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
RKKLA PY + D+T+ ++++ +P+T+ + + G+ + + + + L+ I
Sbjct: 544 RTLRKKLADEQDIPPYMVFSDKTLVELSVVKPTTRDEMLAVSGIGEVKLERYAEPFLEVI 603
>gi|258625868|ref|ZP_05720743.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus VM603]
gi|258581832|gb|EEW06706.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus VM603]
Length = 620
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 512 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 564
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 565 LPPYVVFSDATLIDMAEILPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 617
>gi|422908717|ref|ZP_16943388.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-09]
gi|341638676|gb|EGS63315.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-09]
Length = 611
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 456 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 502
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 503 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEG 555
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
PY + D T+ +A P++ + ++GV Q + + D L I+
Sbjct: 556 LPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQ 604
>gi|359299526|ref|ZP_09185365.1| ATP-dependent DNA helicase RecQ [Haemophilus [parainfluenzae] CCUG
13788]
gi|402304439|ref|ZP_10823509.1| ATP-dependent DNA helicase RecQ [Haemophilus sputorum HK 2154]
gi|400378027|gb|EJP30892.1| ATP-dependent DNA helicase RecQ [Haemophilus sputorum HK 2154]
Length = 601
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 22/177 (12%)
Query: 8 QFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDH 67
Q D L ++G+GK+ S +W ++ QLI G + + I Q ARP
Sbjct: 445 QHDSLSVYGIGKEQSREYWISVIRQLIHLGLVRQNI--------AHHSALQLTEEARP-- 494
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
GE+ ++ ++A + + D L+ L RK++A
Sbjct: 495 ------VLRGEVALELAMPRLT-----FSATAFSQKQASVRYDKDLFARLRFLRKQIADK 543
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI-RHLSQK 183
PY + D T++++A P+T+A + +I+GV + + G +Q I +HL +
Sbjct: 544 ENIPPYVVFNDATLEEMAQFTPTTRAEMLDINGVGERKLERFGQAFMQLIEQHLEAR 600
>gi|330827839|ref|YP_004390791.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii B565]
gi|406674905|ref|ZP_11082097.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AMC35]
gi|423211489|ref|ZP_17198022.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AER397]
gi|328802975|gb|AEB48174.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii B565]
gi|404613569|gb|EKB10590.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AER397]
gi|404628413|gb|EKB25195.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AMC35]
Length = 611
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 24/180 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL +G+GKD S +W ++ QLI G LT+ I R + + Q
Sbjct: 447 NQRIKDHGHDKLSTYGIGKDQSHEYWMSVIRQLIHKGLLTQNIT---RNLVL-----QLT 498
Query: 61 GSARPDHQPPLLLTFNGEM---VDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHML 117
+ARP G++ + + ISS K + L+N + D +L+ L
Sbjct: 499 EAARP--------VLRGDVKLELAVPRLQPISSR--KEKRNGLLDNANY---DKRLFKEL 545
Query: 118 LEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
RK++A PY + D T+ ++A P T+ + I+GV + G+ + I
Sbjct: 546 RGLRKQIAEDEEVPPYVVFNDATLVEMAQLMPMTEDEMLAINGVGHRKLERFGEAFMDLI 605
>gi|190892703|ref|YP_001979245.1| ATP-dependent DNA helicase [Rhizobium etli CIAT 652]
gi|190697982|gb|ACE92067.1| ATP-dependent DNA helicase protein [Rhizobium etli CIAT 652]
Length = 621
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 16/164 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G GKD W+++ QL++ G L + Y + + + + R
Sbjct: 469 VFGAGKDIPVRTWQSVCRQLLAMG-LIRVDHEAYGALKLEPEARAVFKHERQ-------- 519
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
F + A E T + KS+ S AD L+ L ER +A+ G PY
Sbjct: 520 VFFRKDRPASERRTKKVERSERKSA-------LSGADGSLFEALRAERMAIAKSLGVPPY 572
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D T+ A RP ++ L I GV Q + +GD L+ I
Sbjct: 573 VVFPDTTLIAFATERPRSRKELLAISGVGQAKLERYGDAFLEII 616
>gi|404494034|ref|YP_006718140.1| ATP-dependent DNA helicase RecQ [Pelobacter carbinolicus DSM 2380]
gi|77546057|gb|ABA89619.1| ATP-dependent DNA helicase RecQ [Pelobacter carbinolicus DSM 2380]
Length = 596
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 19/168 (11%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D+L +G+G D S + W +L QL+ GYL + + + Y + ++++ +
Sbjct: 445 DRLSTYGIGADVSRDAWGSLVRQLVHRGYLYQDVGN-YSVLRLTEKAR------------ 491
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GE+ I SS + + D+ L+ L RK++A
Sbjct: 492 PLL---RGEITLQLAKPRIKVKAVKKPSSRSASEWSY---DVALFDALRTLRKQIADHEH 545
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
P+ + D T+ ++A RP +A L +++GV Q + +G+ L +
Sbjct: 546 VPPFVVFSDATLAEMAARRPRDEAALLSVNGVGQRKLQRYGEDFLALL 593
>gi|429741035|ref|ZP_19274704.1| ATP-dependent DNA helicase RecQ [Porphyromonas catoniae F0037]
gi|429159704|gb|EKY02201.1| ATP-dependent DNA helicase RecQ [Porphyromonas catoniae F0037]
Length = 725
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 19/165 (11%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
G+G+D W T+ Q + GYL + +++ Y + ++ GK+Y+ + P+
Sbjct: 455 FGVGQDIDDTTWTTIIRQALIAGYLEKDVEN-YGLLKITSAGKKYM-------KKPVSFK 506
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYA 134
T S + D SSA + D LY ++ + RKK+ + G PY
Sbjct: 507 I-----------TESEDDPDEVSSAGQGSGSGESTDPTLYAIMKDLRKKMGQQNGVPPYV 555
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
+ D +++ +A P T L NI GV +G L+ IR
Sbjct: 556 IFQDTSLEAMATFYPVTMEELQNIPGVGAGKAARYGQKFLEVIRR 600
>gi|310659806|ref|YP_003937527.1| ATP-dependent DNA helicase [[Clostridium] sticklandii]
gi|308826584|emb|CBH22622.1| ATP-dependent DNA helicase [[Clostridium] sticklandii]
Length = 600
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 83/179 (46%), Gaps = 19/179 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV++A+ D + +G+ K++S + + L+S GY+ T D Y + ++ + L
Sbjct: 438 NKKVLEARLDNVSTYGIMKEYSDSAISEIIMTLVSSGYIHMT-HDKYPVLKLTSKSADVL 496
Query: 61 -GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
G + H+ LL + D +E + S G++ + D++L+ L +
Sbjct: 497 SGKTKLHHKKHLL-----QKKDEKEKASKSVKGGNI------------DFDIELFEKLKQ 539
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
R K+A+ G PY + D +K++A P K I GV + +G+ + I+
Sbjct: 540 YRYKIAQEKGLPPYVIFHDIALKEMAAYLPVNKESFLEIKGVGEKKYENYGEGFIDIIK 598
>gi|257413601|ref|ZP_05591716.1| ATP-dependent DNA helicase RecQ [Roseburia intestinalis L1-82]
gi|257203023|gb|EEV01308.1| ATP-dependent DNA helicase RecQ [Roseburia intestinalis L1-82]
Length = 639
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 57 KQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHM 116
+QY+ + DH P + + +V +E E G K T E +E +L+
Sbjct: 361 RQYILNYFGDHSPCICEKCSNCVVTEDEAEENYIETGRAKKK-TAELADLTEEGQELFEK 419
Query: 117 LLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQT 176
L + R +LA G P+ +C D+T+K + P+ K ++A++ G+ + ++G+ +
Sbjct: 420 LRKCRSELAAKQGVPPFIICSDKTLKDMCARCPADKTQMADVYGMGAQKIASYGESFTEI 479
Query: 177 IRHLSQ 182
IR Q
Sbjct: 480 IRMFLQ 485
>gi|123440598|ref|YP_001004592.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122087559|emb|CAL10340.1| ATP-dependent DNA helicase [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 616
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 85/178 (47%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+G++ S W ++ QLI G L++ I ++ + +++
Sbjct: 444 NQRIREFDHDKLSVYGIGREQSHEHWVSVLRQLIHLGLLSQNIA-MFSALQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP + L L + + + ++SSA ++ G D +L+ L +
Sbjct: 497 -AARPVLRAELPLQLAVPRIQSLK----------VRSSANQKSYG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P T + L +++GV Q + G + IR
Sbjct: 545 RKSIADEGNIPPYVVFNDATLLEMAEQMPITASELLSVNGVGQRKLERFGAPFMAMIR 602
>gi|89074461|ref|ZP_01160938.1| putative ATP-dependent DNA helicase RecQ [Photobacterium sp. SKA34]
gi|89049749|gb|EAR55299.1| putative ATP-dependent DNA helicase RecQ [Photobacterium sp. SKA34]
Length = 616
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 20/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL +G+G+++S +W ++ QLI GYLT+ I SV Q ++
Sbjct: 449 NQRIREHGHDKLSTYGIGREYSHEYWVSVLRQLIHLGYLTQNIS----RNSVLQLTEK-- 502
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
AR PLL G + + I+ N+ K L N + D +L+ L +
Sbjct: 503 --AR-----PLLRAEIGLELAVPRLDNIARNMKVNK----LANRQY---DKKLFAKLRKL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D ++ ++A P++ ++GV Q + +G+ L IR
Sbjct: 549 RKAIADEEDLPPYVVFNDASLMEMAERLPTSNGDFLAVNGVGQRKLEKYGEVFLGLIR 606
>gi|291538230|emb|CBL11341.1| ATP-dependent DNA helicase, RecQ family [Roseburia intestinalis
XB6B4]
Length = 639
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 57 KQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHM 116
+QY+ + DH P + + +V +E E G K T E +E +L+
Sbjct: 361 RQYILNYFGDHSPCICEKCSNCVVTEDEAEENYIETGRAKKK-TAELADLTEEGQELFEK 419
Query: 117 LLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQT 176
L + R +LA G P+ +C D+T+K + P+ K ++A++ G+ + ++G+ +
Sbjct: 420 LRKCRSELAAKQGVPPFIICSDKTLKDMCARCPADKTQMADVYGMGAQKIASYGESFAEI 479
Query: 177 IRHLSQ 182
IR Q
Sbjct: 480 IRMFLQ 485
>gi|410670594|ref|YP_006922965.1| ATP-dependent DNA helicase RecQ [Methanolobus psychrophilus R15]
gi|409169722|gb|AFV23597.1| ATP-dependent DNA helicase RecQ [Methanolobus psychrophilus R15]
Length = 705
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 83/174 (47%), Gaps = 13/174 (7%)
Query: 18 GKDHSSNWWKTLAYQLISYGYL-TETIKDVYRTVSVSQQGKQYLGSARP---DHQPPLLL 73
G H+ W+ +A +++ G + E I+ Y + +++ ++ + +R PL
Sbjct: 450 GYRHTRPSWQDMAREMVQQGVVAVEGIR--YPLLKLNKASREVMQGSRKVAFTRIAPLEF 507
Query: 74 TFNGEMVDAEEHE--TISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTA 131
D E +E TI+ V ++ +N +D +L+ L + RK++A +
Sbjct: 508 PDTQTCEDDEPYEPDTIAKPVTPPRARKAAQN-----SDSELFSRLKDLRKEMANLQDVP 562
Query: 132 PYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
PY + D ++K++A +PS+K + I GV ++ + +GD L+ I ++ N
Sbjct: 563 PYIIFADTSLKQMAAKKPSSKEEMLKITGVGEYKLKKYGDIFLREIGRYCEEKN 616
>gi|90581058|ref|ZP_01236858.1| putative ATP-dependent DNA helicase RecQ [Photobacterium angustum
S14]
gi|90437754|gb|EAS62945.1| putative ATP-dependent DNA helicase RecQ [Vibrio angustum S14]
Length = 616
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 20/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL +G+G+++S +W ++ QLI GYLT+ I SV Q ++
Sbjct: 449 NQRIREHGHDKLSTYGIGREYSHEYWVSVLRQLIHLGYLTQNIS----RNSVLQLTEK-- 502
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
AR PLL G + + I+ N+ K L N + D +L+ L +
Sbjct: 503 --AR-----PLLRAEIGLELAVPRLDNIARNMKVNK----LANRQY---DKKLFAKLRKL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D ++ ++A P++ ++GV Q + +G+ L IR
Sbjct: 549 RKAIADEEDLPPYVVFNDASLMEMAERLPTSNGDFLAVNGVGQRKLEKYGEVFLGLIR 606
>gi|322514973|ref|ZP_08067985.1| ATP-dependent helicase RecQ [Actinobacillus ureae ATCC 25976]
gi|322119026|gb|EFX91190.1| ATP-dependent helicase RecQ [Actinobacillus ureae ATCC 25976]
Length = 602
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D+L ++G+GK+ S ++W ++ QLI G + + I V+ Q
Sbjct: 439 NQKIRQFNHDQLSVYGIGKEQSQDYWLSIIRQLIHLGLIRQNI--------VNHSALQLT 490
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
ARP ++ +E+ ++ ++A ++ + D L+ L
Sbjct: 491 EEARP-------------VLRSEKKLELAMPRLTFSATAYVQKQTSVRYDKDLFARLRFL 537
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A P T+ + +I+GV + + G L I+
Sbjct: 538 RKQIADKENIPPYVVFNDATLQEMAEFLPLTEVEMLDINGVGERKLERFGGAFLSLIQ 595
>gi|374328402|ref|YP_005078586.1| DNA helicase, ATP-dependent, RecQ type, bacterial [Pseudovibrio sp.
FO-BEG1]
gi|359341190|gb|AEV34564.1| DNA helicase, ATP-dependent, RecQ type, bacterial [Pseudovibrio sp.
FO-BEG1]
Length = 612
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 31/186 (16%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+++++ D+L +G + + W + QL++ G L D + + ++ G +L
Sbjct: 449 NERIISRGHDQLSTFDIGGEFTKIQWNAITRQLLAAG-LIFADHDAHGALKMTAMGMAFL 507
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEA--------DMQ 112
+E +TI V L +SA +E + A D +
Sbjct: 508 ----------------------KERQTIELKVDQLANSAKMERRAKAPAKAQIEDIADQE 545
Query: 113 LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDH 172
L+ L R +LAR PY + D+T+ ++A+ RP + I GV + + G
Sbjct: 546 LFEKLRARRMELARERNVPPYVIFNDKTLIEMAVERPQRLEEMLEISGVGESKLERFGPA 605
Query: 173 LLQTIR 178
L+ IR
Sbjct: 606 FLEIIR 611
>gi|238793565|ref|ZP_04637189.1| ATP-dependent DNA helicase recQ [Yersinia intermedia ATCC 29909]
gi|238727155|gb|EEQ18685.1| ATP-dependent DNA helicase recQ [Yersinia intermedia ATCC 29909]
Length = 610
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 85/178 (47%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+G++ S W ++ QLI G L++ I ++ + +++
Sbjct: 444 NQRIREMGHDKLSVYGIGREQSHEHWVSVLRQLIHLGLLSQNIA-MFSALQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP + L L + + + ++SSA ++ G D +L+ L +
Sbjct: 497 -AARPILRAELPLQLAVPRIQSLK----------VRSSANQKSYG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P T + L +++GV Q + G + IR
Sbjct: 545 RKSIADEGNIPPYVVFNDATLLEMAEQMPITASELLSVNGVGQRKLERFGAPFMAMIR 602
>gi|421740480|ref|ZP_16178731.1| ATP-dependent DNA helicase RecQ [Streptomyces sp. SM8]
gi|406691159|gb|EKC94929.1| ATP-dependent DNA helicase RecQ [Streptomyces sp. SM8]
Length = 686
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 16/181 (8%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ KV+ D+L + G+G++ S W+ QL++ G L ++ Y T+ ++ + + L
Sbjct: 510 TAKVIQFDHDQLSVFGVGQELSEGEWRGAVRQLLAQGLLA--VEGEYGTLVLTDEAGEVL 567
Query: 61 GSARPDHQPPLLLTFNGEMVDA----EEHETISSNVGDLKSSATLENEGFSEADMQLYHM 116
G R + F E A ++ G KS A ++ E + ++
Sbjct: 568 GGRRE-------VRFRKEPKKAPSSRGSRSGSAAGSGGRKSKAVID---LPEESLPVFEA 617
Query: 117 LLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQT 176
L R AR G Y + D T+++I ARP+T L I G+ + +G +L+T
Sbjct: 618 LRAWRAAQAREQGVPAYVIFHDATLREITAARPTTLDALGQIGGIGDKKLQNYGPGVLET 677
Query: 177 I 177
+
Sbjct: 678 L 678
>gi|419926481|ref|ZP_14444247.1| ATP-dependent DNA helicase RecQ [Escherichia coli 541-15]
gi|388382669|gb|EIL44516.1| ATP-dependent DNA helicase RecQ [Escherichia coli 541-15]
Length = 611
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I + T+ +++
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNIAQ-HSTLQLTE------ 498
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 499 -AARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|262172709|ref|ZP_06040387.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus MB-451]
gi|261893785|gb|EEY39771.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus MB-451]
Length = 620
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PLL GEM E + +A + D +L+ L + RK +A G
Sbjct: 512 PLL---RGEM----NIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKTIADDEG 564
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 565 LPPYVVFSDATLIDMAEILPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 617
>gi|429888125|ref|ZP_19369618.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae PS15]
gi|429224784|gb|EKY31102.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae PS15]
Length = 620
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 27/176 (15%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DK+ +G+G+DHS ++W ++ QLI G L + I T+ ++++ +
Sbjct: 465 DKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITR-NSTLQLTEEAR------------ 511
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATL-ENEGFS--EADMQLYHMLLEERKKLAR 126
PLL GEM I V L ++A +++ S D +L+ L + RK +A
Sbjct: 512 PLL---RGEM-------NIELAVPRLDTAARAGKSDKLSGKNYDKKLFAKLRKLRKSIAD 561
Query: 127 VTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
G PY + D T+ +A P++ + ++GV Q + + D L I+ HL+
Sbjct: 562 DEGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLT 617
>gi|456352797|dbj|BAM87242.1| ATP-dependent DNA helicase RecQ [Agromonas oligotrophica S58]
Length = 625
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 8 QF--DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARP 65
QF D+L + G+G++ + W+ QL++ G+L + Y + ++ + L P
Sbjct: 454 QFGHDQLSVFGIGRELNEKQWRAALRQLVAMGHLAPD-SEAYGALKFTETSRGVLKGETP 512
Query: 66 DHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLA 125
+ E A S G+L + G ++ D L L R ++A
Sbjct: 513 -------VMLREETAHAARAIRSKSRRGEL-----VPRPGPAD-DATLLASLRAWRAEIA 559
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R G Y + D TI IA ARP+T +L I G+ + +GD LL I
Sbjct: 560 RKRGVPAYVVLHDATIDGIAAARPTTSGQLRGIPGIGDKKLEHYGDELLALI 611
>gi|291451993|ref|ZP_06591383.1| helicase [Streptomyces albus J1074]
gi|291354942|gb|EFE81844.1| helicase [Streptomyces albus J1074]
Length = 693
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 16/181 (8%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ KV+ D+L + G+G++ S W+ QL++ G L ++ Y T+ ++ + + L
Sbjct: 510 TAKVIQFDHDQLSVFGVGQELSEGEWRGAVRQLLAQGLLA--VEGEYGTLVLTDEAGEVL 567
Query: 61 GSARPDHQPPLLLTFNGEMVDA----EEHETISSNVGDLKSSATLENEGFSEADMQLYHM 116
G R + F E A ++ G KS A ++ E + ++
Sbjct: 568 GGRRE-------VRFRKEPKKAPSSRGSRSGSAAGSGGRKSKAVID---LPEESLPVFEA 617
Query: 117 LLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQT 176
L R AR G Y + D T+++I ARP+T L I G+ + +G +L+T
Sbjct: 618 LRAWRAAQAREQGVPAYVIFHDATLREITAARPTTLDALGQIGGIGDKKLQNYGPGVLET 677
Query: 177 I 177
+
Sbjct: 678 L 678
>gi|120597203|ref|YP_961777.1| ATP-dependent DNA helicase RecQ [Shewanella sp. W3-18-1]
gi|146291576|ref|YP_001182000.1| ATP-dependent DNA helicase RecQ [Shewanella putrefaciens CN-32]
gi|120557296|gb|ABM23223.1| ATP-dependent DNA helicase RecQ [Shewanella sp. W3-18-1]
gi|145563266|gb|ABP74201.1| ATP-dependent DNA helicase RecQ [Shewanella putrefaciens CN-32]
Length = 607
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 19/174 (10%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
+VD DKL G+GKD S +W ++ QLI G ++ DV R S++ SA
Sbjct: 446 IVDRGHDKLTTWGIGKDKSHEYWLSVIRQLIHLGLASQ---DVTRGSSITLN-----PSA 497
Query: 64 RPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKK 123
RP GE+ I K+S +++ D +L+ L R+
Sbjct: 498 RP--------VLKGEVALMLAEPRIQLTTTKRKAS---QSKAPLNYDRKLFARLKLLRRT 546
Query: 124 LARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+A PY + D T+ ++A P++ + ++GV + + GD L I
Sbjct: 547 IAEQQDVPPYLVFNDATLAEMAAMMPTSAGEMLAVNGVGERKLSRFGDDFLDEI 600
>gi|298715824|emb|CBJ28289.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 559
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 16 GLGKDH--SSNWWKTLAYQLISYGYLTETIK-------DVYRTVSVSQQGKQYLGSARPD 66
G GK+ + +WK L +QL+ E + T +++QG+ +L + +
Sbjct: 392 GKGKERGKTETFWKALFHQLVERQGFLEAVSFSSDNGGRSGTTYRLTRQGRSFLQATK-- 449
Query: 67 HQPPLLLTFNGEMV-DAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLA 125
+ P+ T + E+ + T ++ D G SE + +++ +LL RK++A
Sbjct: 450 EKLPMSFTPSDELATEGRRFRTAAARPADGYPQTNAARNGLSEEEQKVHALLLNLRKEIA 509
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQ 175
TG PY + G +K+++ RP L ++ G+ + + +G +++
Sbjct: 510 DRTGEMPYNVMGGAVVKELSKRRPVDLTTLTSVGGMGETKINKYGAEIIE 559
>gi|386312124|ref|YP_006008289.1| ATP-dependent DNA helicase RecQ [Shewanella putrefaciens 200]
gi|319424749|gb|ADV52823.1| ATP-dependent DNA helicase RecQ [Shewanella putrefaciens 200]
Length = 607
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 19/174 (10%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
+VD DKL G+GKD S +W ++ QLI G ++ DV R S++ SA
Sbjct: 446 IVDRGHDKLTTWGIGKDKSHEYWLSVIRQLIHLGLASQ---DVTRGSSITLN-----PSA 497
Query: 64 RPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKK 123
RP GE+ I K+S +++ D +L+ L R+
Sbjct: 498 RP--------VLKGEVALMLAEPRIQLTTTKRKAS---QSKAPLNYDRKLFARLKLLRRT 546
Query: 124 LARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+A PY + D T+ ++A P++ + ++GV + + GD L I
Sbjct: 547 IAEQQDVPPYLVFNDATLAEMAAMMPTSAGEMLAVNGVGERKLSRFGDDFLDEI 600
>gi|403732092|ref|ZP_10949602.1| ATP-dependent DNA helicase RecQ [Gordonia rhizosphera NBRC 16068]
gi|403201920|dbj|GAB93933.1| ATP-dependent DNA helicase RecQ [Gordonia rhizosphera NBRC 16068]
Length = 608
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 19/167 (11%)
Query: 11 KLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPP 70
+L +G+G D + W+++ QL++ G + E D V + G P
Sbjct: 455 RLTTYGIGADLDAAAWRSVIRQLVATG-VVEPRGDYGVLVLTEKSG-------------P 500
Query: 71 LLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGT 130
+L M+ + + ++ K++A L + AD L+ L RK A G
Sbjct: 501 VLRGETTVMLRTDPARSPATRGRSTKAAAELPD-----ADRGLFEHLRTWRKAEASQRGV 555
Query: 131 APYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D T++++A RP + A+L ++ G+ + +GD +L TI
Sbjct: 556 PPYVVFNDATLRELATRRPESAAQLRSVSGIGDAKLEQYGDAVLATI 602
>gi|293563706|ref|ZP_06678146.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1162]
gi|291604284|gb|EFF33778.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1162]
Length = 347
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDH 67
F L +GL K+ S L LIS GYL TI Y + V+++G Q L G
Sbjct: 198 FGHLSTYGLMKNQSQKETMQLIEYLISNGYLL-TINGEYPVLKVTERGIQVLKGQESVYR 256
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ P K L +E E D L+ +L E R LA
Sbjct: 257 KEP-------------------------KKVQQLSDE---ETDT-LFEVLRELRTDLASE 287
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 288 AGVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKN 339
>gi|114045876|ref|YP_736426.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-7]
gi|113887318|gb|ABI41369.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-7]
Length = 607
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 19/174 (10%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
+VD DKL G+GKD S +W ++ QLI G ++ D+ R S++ SA
Sbjct: 446 IVDRGHDKLSTWGIGKDKSHEYWLSVIRQLIHLGLASQ---DITRGSSITLN-----PSA 497
Query: 64 RPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKK 123
RP +L + ++ AE +++ + S T N D +L+ L R+
Sbjct: 498 RP------ILKGDVALMLAEPRIQLTNIKRKVTQSRTPLN-----YDRKLFARLKALRRT 546
Query: 124 LARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+A PY + D T+ ++A P++ + ++GV + + GD L I
Sbjct: 547 IAEEQDVPPYLVFNDATLAEMAAMMPTSPGEMLAVNGVGERKLSRFGDDFLDEI 600
>gi|238760167|ref|ZP_04621314.1| ATP-dependent DNA helicase recQ [Yersinia aldovae ATCC 35236]
gi|238701603|gb|EEP94173.1| ATP-dependent DNA helicase recQ [Yersinia aldovae ATCC 35236]
Length = 605
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+G++ + W ++ QLI G L++ I ++ + +++
Sbjct: 439 NQRIREMGHDKLSVYGIGREQTHEHWVSVLRQLIHLGLLSQNIA-MFSALQLTE------ 491
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFS-EADMQLYHMLLE 119
+ARP + L L + + +LK+ ++ + + D +L+ L +
Sbjct: 492 -AARPVLRAELPL------------QLAVPRIQNLKARSSANQKSYGGNYDRKLFAKLRK 538
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + L +++GV Q + G + IR
Sbjct: 539 LRKSIADESNIPPYVVFNDTTLLEMAEQMPITASELLSVNGVGQRKLERFGASFMAMIR 597
>gi|359146169|ref|ZP_09179800.1| ATP-dependent DNA helicase RecQ [Streptomyces sp. S4]
Length = 693
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 16/181 (8%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ KV+ D+L + G+G++ S W+ QL++ G L ++ Y T+ ++ + + L
Sbjct: 510 TAKVIQFDHDQLSVFGVGQELSEGEWRGAVRQLLAQGLLA--VEGEYGTLVLTDEAGEVL 567
Query: 61 GSARPDHQPPLLLTFNGEMVDA----EEHETISSNVGDLKSSATLENEGFSEADMQLYHM 116
G R + F E A ++ G KS A ++ E + ++
Sbjct: 568 GGRRE-------VRFRKEPKKAPSSRGSRSGSAAGSGGRKSKAVID---LPEESLPVFEA 617
Query: 117 LLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQT 176
L R AR G Y + D T+++I ARP+T L I G+ + +G +L+T
Sbjct: 618 LRAWRATQAREQGVPAYVIFHDATLREITAARPTTLDALGQIGGIGDKKLQNYGPGVLET 677
Query: 177 I 177
+
Sbjct: 678 L 678
>gi|218528089|ref|YP_002418905.1| ATP-dependent DNA helicase RecQ [Methylobacterium extorquens CM4]
gi|218520392|gb|ACK80977.1| ATP-dependent DNA helicase RecQ [Methylobacterium extorquens CM4]
Length = 615
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 23/174 (13%)
Query: 12 LLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS-----ARPD 66
L G+G D W+ L QL + G + E D Y + ++++G+ L RPD
Sbjct: 452 LKTFGVGNDKPVAAWRALLRQLFAAGAVAENT-DGYGGLVMTEKGEAILFGRETIEVRPD 510
Query: 67 HQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLAR 126
+P AE ++ D E SEAD L+ L R +AR
Sbjct: 511 PEPK----------KAEPRSRRATPRDD-------EANALSEADEALFQHLRGLRATIAR 553
Query: 127 VTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
G A + + D+T+ ++A A+P L + GV + +G+ TIR
Sbjct: 554 AEGIAAFMVFPDRTLIEMARAKPVDLWALRTVHGVGERKREAYGERFTDTIREF 607
>gi|329938318|ref|ZP_08287769.1| helicase [Streptomyces griseoaurantiacus M045]
gi|329302807|gb|EGG46697.1| helicase [Streptomyces griseoaurantiacus M045]
Length = 638
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 15/179 (8%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ KV+ D+L + G+G++ + W+ + QL++ G L ++ Y + ++++ L
Sbjct: 462 TAKVIQFDHDQLSVFGIGEELAEGEWRGVVRQLLAQGLLA--VEGEYGALVLTEESGTVL 519
Query: 61 GSAR--PDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLL 118
R P + P T + G+ K+ A + + L
Sbjct: 520 WHGREVPLRKEPKRPTAS---------RASGGGRGERKARAAAPE--LPAELVPAFEALR 568
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R + AR G Y + D T+++IA ARPST A L I+GV + + T+G+ +L +
Sbjct: 569 AWRAEQAREQGVPAYIIFHDATLREIATARPSTVAELGAINGVGEKKLATYGEGVLGAL 627
>gi|325280334|ref|YP_004252876.1| ATP-dependent DNA helicase RecQ [Odoribacter splanchnicus DSM
20712]
gi|324312143|gb|ADY32696.1| ATP-dependent DNA helicase RecQ [Odoribacter splanchnicus DSM
20712]
Length = 727
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 20/171 (11%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL L G G + S +W T+ Y+ E + Y + ++ +G+++L D+
Sbjct: 451 DKLELFGAGSEKSRQFW-TMVYRRALVSSFIEKDIEQYGVIKLTDEGQKFL-----DNPK 504
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATL-ENEGFSEADMQLYHMLLEERKKLARVT 128
+L E+H N + + + E G S D L+ +L + RKK+A+
Sbjct: 505 SFMLM--------EDH-----NFDENEEEEKIQEKGGVSALDSTLFAILKDLRKKIAKTN 551
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
PY + D +++ + P T LANI GV +G ++ I+
Sbjct: 552 NLPPYVIFQDPSLEDMCTNYPITLEELANIQGVGAGKAQKYGKEFVEVIKQ 602
>gi|153852869|ref|ZP_01994306.1| hypothetical protein DORLON_00288 [Dorea longicatena DSM 13814]
gi|149754511|gb|EDM64442.1| ATP-dependent DNA helicase RecQ [Dorea longicatena DSM 13814]
Length = 624
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 106 FSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHL 165
SE D +L+ L E R+++A PY + D+T+ + + RP+T+ + + GV +H
Sbjct: 550 LSEKDAELFESLRELRREIASEEKVPPYMVFADKTLAGMCVMRPATRDEMLEVSGVGEHK 609
Query: 166 VITHGDHLLQTIR 178
+ +GD L+ +R
Sbjct: 610 LEKYGDRFLEILR 622
>gi|428178543|gb|EKX47418.1| cpRecQ plastid-targeted DNA helicase [Guillardia theta CCMP2712]
Length = 673
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 31/177 (17%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGY----------LTETIKDVYRTVSVSQQGKQYLGSARP 65
G GK+ S++WWK L QL+S + + ++ V +S +G ++L S
Sbjct: 493 GKGKNKSADWWKQLGQQLLSLDQPLLEEHARVGVANGRQQTFKIVKISAKGYEWLHS--- 549
Query: 66 DHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLA 125
PL +T + M + E+ E N QL +L + R+++A
Sbjct: 550 HENLPLPITLSKGMQELEDKEKWIGN------------------QEQLLVLLRKTREEIA 591
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQ 182
+C D + ++ + RP+ LA ++GV+Q+ + +G L+ I + S+
Sbjct: 592 SAQHLPASTVCPDPLLFELVIHRPADLDSLAEVEGVSQNFLEKYGTRFLKDIEYYSE 648
>gi|441500281|ref|ZP_20982448.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
gi|441435974|gb|ELR69351.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
Length = 723
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 19/206 (9%)
Query: 109 ADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVIT 168
+ +L+ L R ++A+ PY + D T++++A +P ++ LA I G +
Sbjct: 526 VNQELFTTLKALRMEIAQRENVPPYIVFSDATLQELATYKPLSREDLAEISGFGAVKMDK 585
Query: 169 HGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGL 228
+G L+ + Q S+ ++ H ++ NT+ P K E KM+ E G
Sbjct: 586 YGAVFLKAVVDFCQ--GNSIHSQM--HQKPKKRKKKPSNTKA---PTKKETLKMFRE-GK 637
Query: 229 SIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKV 288
+I++IA+ +K TV ++L E V G ++N L + + DEI +Q +
Sbjct: 638 TIEEIADL----RDLKFSTVENHLNEFVQTG-ELNVLDLISK-EVFDEILPVVQ---AND 688
Query: 289 GCKDKLKPIKNELPDDITYAHIKACL 314
G LKP+K +L D+ITY I+ +
Sbjct: 689 GLA--LKPVKEKLRDEITYGQIRTVV 712
>gi|240136788|ref|YP_002961255.1| ATP-dependent DNA helicase [Methylobacterium extorquens AM1]
gi|418058710|ref|ZP_12696678.1| ATP-dependent DNA helicase RecQ [Methylobacterium extorquens DSM
13060]
gi|240006752|gb|ACS37978.1| ATP-dependent DNA helicase [Methylobacterium extorquens AM1]
gi|373567771|gb|EHP93732.1| ATP-dependent DNA helicase RecQ [Methylobacterium extorquens DSM
13060]
Length = 615
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 23/174 (13%)
Query: 12 LLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS-----ARPD 66
L G+G D W+ L QL + G + E D Y + ++++G+ L RPD
Sbjct: 452 LKTFGVGNDKPVAAWRALLRQLFAAGAVAENT-DGYGGLVMTEKGEAILFGRETIEVRPD 510
Query: 67 HQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLAR 126
+P AE ++ D E SEAD L+ L R +AR
Sbjct: 511 PEPK----------KAEPRSRRATPRDD-------EANALSEADEALFQHLRGLRATIAR 553
Query: 127 VTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
G A + + D+T+ ++A A+P L + GV + +G+ TIR
Sbjct: 554 AEGIAAFMVFPDRTLIEMARAKPVDLWALRTVHGVGERKREAYGERFTDTIREF 607
>gi|380513575|ref|ZP_09856982.1| DNA helicase superfamily II protein [Xanthomonas sacchari NCPPB
4393]
Length = 602
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 15/168 (8%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D+L +G+GKD + W+ + QL++ G L E D Y + ++ +Q L R
Sbjct: 446 DQLSTYGIGKDLDARAWRGVFRQLVATGLL-EVDSDAYGGLRLTDASRQVLKGER----- 499
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
+++ E + GD +S + D+ L++ L + R LA+
Sbjct: 500 --------KIMMRRELPSRGRERGD-RSGSPRTGVPVQAQDLPLFNALRDLRAGLAKEQN 550
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ + D T++ IA RPS+ LA + G+ + +G L+ +
Sbjct: 551 VPAFVIFHDSTLRNIAEQRPSSLDELARVGGIGGSKLARYGQQLIDIV 598
>gi|420338400|ref|ZP_14839955.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-315]
gi|391258280|gb|EIQ17384.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-315]
Length = 609
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 DAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|365972647|ref|YP_004954208.1| ATP-dependent DNA helicase recQ [Enterobacter cloacae EcWSU1]
gi|365751560|gb|AEW75787.1| ATP-dependent DNA helicase recQ [Enterobacter cloacae EcWSU1]
Length = 630
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GKD S W ++ QLI G+ T+ I Q
Sbjct: 465 NQRIRDMGHDKLPVYGIGKDQSHEHWVSIIRQLIHLGFATQNI--------AQHSALQLT 516
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP G++ E + V LK ++ G D +L+ L +
Sbjct: 517 EAARP--------VLRGDI----ELKLAVPRVVALKPRVMQKSYG-GNYDRKLFAKLRKL 563
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P + + + +++GV + G + IR
Sbjct: 564 RKAIADEENIPPYVVFNDATLIEMAEQTPLSASEMLSVNGVGTRKLERFGKEFMALIR 621
>gi|443243562|ref|YP_007376787.1| ATP-dependent DNA helicase [Nonlabens dokdonensis DSW-6]
gi|442800961|gb|AGC76766.1| ATP-dependent DNA helicase [Nonlabens dokdonensis DSW-6]
Length = 720
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 128/315 (40%), Gaps = 35/315 (11%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
V+++ F + +G GK+ S N W+ Q+I+ G L E + ++ QGK+ L
Sbjct: 432 VMESGFQAIKTYGAGKETSWNDWQQYIVQMINQG-LIEIAFHEQNHLKITPQGKEVLFDG 490
Query: 64 RPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKK 123
R + L + E + A+ + + +E + LY L + R +
Sbjct: 491 R---KVSLAVIPKPEELAAKRAQQTQEALP-------------TEVNRDLYEALRKTRLQ 534
Query: 124 LARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL--S 181
LA + APY + D T+K +A P A+I GV H T+G L+ ++ S
Sbjct: 535 LANSSNLAPYMIFSDATLKDMAARIPLEDNEFADIVGVGTHKHDTYGVPFLRMLKEWKDS 594
Query: 182 QKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSA 241
+K + +V + +K T + K W DG +++++A G
Sbjct: 595 RKEDFVYREEVAKPKR-KKKKASGPKKDTVMESVKL----FW--DGKTVEEVAEIRG--- 644
Query: 242 PIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNEL 301
+ T++ +L + DI+ +L + + + I E KV D LKP+
Sbjct: 645 -FQPSTILAHLTKRYESHNDIDLEKL-----IAGKDYDLIAEDFDKVKDYDSLKPVYEHF 698
Query: 302 PDDITYAHIKACLVM 316
I Y ++ L +
Sbjct: 699 DGQIDYGSLRVGLTL 713
>gi|59710677|ref|YP_203453.1| ATP-dependent DNA helicase RecQ [Vibrio fischeri ES114]
gi|59478778|gb|AAW84565.1| ATP-dependent DNA helicase [Vibrio fischeri ES114]
Length = 611
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL +G+GK+H+ +W ++ QLI G L + I T+ ++++ + L Q
Sbjct: 456 DKLSTYGIGKEHTHEYWVSIIRQLIHKGLLVQNITR-NSTLQLTEEARPILKG-----QE 509
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PL L + A+ + S L N + D QL+ L + RK +A
Sbjct: 510 PLELAVPRLDIAAKTAK-----------SEKLNNRNY---DKQLFAKLRKLRKSIADRDD 555
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I HL+
Sbjct: 556 LPPYVVFSDATLMDMADILPTSYGEMLAVNGVGQKKLEKYADPFLDLIEMHLT 608
>gi|423684806|ref|ZP_17659614.1| ATP-dependent DNA helicase RecQ [Vibrio fischeri SR5]
gi|371495853|gb|EHN71447.1| ATP-dependent DNA helicase RecQ [Vibrio fischeri SR5]
Length = 608
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL +G+GK+H+ +W ++ QLI G L + I T+ ++++ + L Q
Sbjct: 453 DKLSTYGIGKEHTHEYWVSIIRQLIHKGLLVQNITR-NSTLQLTEEARPILKG-----QE 506
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PL L + A+ + S L N + D QL+ L + RK +A
Sbjct: 507 PLELAVPRLDIAAKTAK-----------SEKLNNRNY---DKQLFAKLRKLRKSIADRDD 552
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I HL+
Sbjct: 553 LPPYVVFSDATLMDMADILPTSYGEMLAVNGVGQKKLEKYADPFLDLIEMHLT 605
>gi|440733531|ref|ZP_20913242.1| DNA helicase superfamily II protein [Xanthomonas translucens
DAR61454]
gi|440360758|gb|ELP98016.1| DNA helicase superfamily II protein [Xanthomonas translucens
DAR61454]
Length = 602
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D+L +G+GKD + W+ + QL++ G L E D Y + ++ +Q L R
Sbjct: 446 DRLSTYGIGKDLDARAWRGVFRQLVATGLL-EVDSDAYGGLRLTDASRQVLKGER----- 499
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
+++ E + G+ +S + D+ L++ L + R LA+
Sbjct: 500 --------QIMMRREAPSRGRERGE-RSGSPRTGVPVQPQDLGLFNALRDLRADLAKEQN 550
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ + D T++ IA RP++ LA++ G+ ++ +G L+ +
Sbjct: 551 VPAFVIFHDSTLRNIAEQRPTSLDELAHVGGIGGTKLVRYGQQLIDIV 598
>gi|300784908|ref|YP_003765199.1| ATP-dependent DNA helicase RecQ [Amycolatopsis mediterranei U32]
gi|384148184|ref|YP_005531000.1| ATP-dependent DNA helicase RecQ [Amycolatopsis mediterranei S699]
gi|399536791|ref|YP_006549453.1| ATP-dependent DNA helicase RecQ [Amycolatopsis mediterranei S699]
gi|299794422|gb|ADJ44797.1| ATP-dependent DNA helicase RecQ [Amycolatopsis mediterranei U32]
gi|340526338|gb|AEK41543.1| ATP-dependent DNA helicase RecQ [Amycolatopsis mediterranei S699]
gi|398317561|gb|AFO76508.1| ATP-dependent DNA helicase RecQ [Amycolatopsis mediterranei S699]
Length = 612
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 80/177 (45%), Gaps = 15/177 (8%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ K+ Q D L G+G + W+ + QL++ G L ++ Y ++ +++ + L
Sbjct: 448 TPKITQFQHDTLKTFGIGTELREPEWRAVVRQLLAQGLL--AVEGDYGSLVLTETSAEVL 505
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
G R ++ E ++ V + +A E +EA L+ L
Sbjct: 506 GGDRQ------------VLLRREPERAAAAKVRSTRKTAAAVVEMPAEA-APLFERLRAW 552
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R +A+ G Y + D T+++IA RP++ A L + GV ++ + +G+ LL+ +
Sbjct: 553 RAGVAKEQGVPAYVVFHDATLRQIATQRPASLADLGTVSGVGENKLAKYGEGLLEVL 609
>gi|320539379|ref|ZP_08039048.1| ATP-dependent DNA helicase [Serratia symbiotica str. Tucson]
gi|320030504|gb|EFW12514.1| ATP-dependent DNA helicase [Serratia symbiotica str. Tucson]
Length = 618
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 20/173 (11%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
++L ++G+G D S+ W ++ QLI G++T+ I Q +ARP
Sbjct: 461 NQLPVYGIGHDRSTEHWISVLRQLIHLGFITQNI--------TMHSALQLAEAARP---- 508
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
GE+ I S +SSA ++ G D +L+ L + RK +A
Sbjct: 509 ----VLRGEVALQLAVPRIQSL--RPRSSANQKSYG-GNYDRKLFAKLRKLRKSIADEEN 561
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ ++ P T L +I+GV Q ++ G + IR HL+
Sbjct: 562 IPPYVVFNDATLLEMVEQMPITAGDLLSINGVGQRKLVRFGTSFMAMIRDHLN 614
>gi|297520379|ref|ZP_06938765.1| ATP-dependent DNA helicase RecQ [Escherichia coli OP50]
Length = 279
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 114 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 165
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 166 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 212
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 213 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 270
>gi|260913220|ref|ZP_05919702.1| ATP-dependent helicase RecQ [Pasteurella dagmatis ATCC 43325]
gi|260632807|gb|EEX50976.1| ATP-dependent helicase RecQ [Pasteurella dagmatis ATCC 43325]
Length = 631
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 19/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D Q D+L ++G+GKD S W+++ QLI G + + T+ +++ K +L
Sbjct: 457 NQKIKDHQHDELTVYGIGKDKSKEHWQSVIRQLIHLGLIKQVFDHFNTTLQLTESAKPFL 516
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ PL L + L + + D L+ L
Sbjct: 517 RGEK-----PLSLAM--------------PRLSSLHAITAPQKSAVQHYDKDLFARLRFL 557
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A Y + D T++++A +P++ + I+GV
Sbjct: 558 RKQIADKENIPSYIVFNDATLQEMAQYQPTSNIEMLQINGV 598
>gi|238763624|ref|ZP_04624584.1| ATP-dependent DNA helicase recQ [Yersinia kristensenii ATCC 33638]
gi|238698102|gb|EEP90859.1| ATP-dependent DNA helicase recQ [Yersinia kristensenii ATCC 33638]
Length = 610
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 85/178 (47%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+G++ S W ++ QLI G L++ I ++ + +++
Sbjct: 444 NQRIREFGHDKLSVYGIGREQSHEHWVSVLRQLIHLGLLSQNIA-MFSALQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP + L L + + + ++SSA ++ G D +L+ L +
Sbjct: 497 -AARPVLRAELPLQLAVPRIQSLK----------VRSSANQKSYG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P T + L +++GV Q + G + IR
Sbjct: 545 RKSIADEGNIPPYVVFNDTTLLEMAEQMPITASELLSVNGVGQRKLERFGAPFMAMIR 602
>gi|197333996|ref|YP_002154839.1| ATP-dependent DNA helicase RecQ [Vibrio fischeri MJ11]
gi|197315486|gb|ACH64933.1| ATP-dependent DNA helicase RecQ [Vibrio fischeri MJ11]
Length = 611
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL +G+GK+H+ +W ++ QLI G L + I T+ ++++ + L Q
Sbjct: 456 DKLSTYGIGKEHTHEYWVSIIRQLIHKGLLVQNITR-NSTLQLTEEARPILKG-----QE 509
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
PL L + A+ + S L N + D QL+ L + RK +A
Sbjct: 510 PLELAVPRLDIAAKTAK-----------SEKLNNRNY---DKQLFAKLRKLRKSIADRDD 555
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-HLS 181
PY + D T+ +A P++ + ++GV Q + + D L I HL+
Sbjct: 556 LPPYVVFSDATLMDMADILPTSYGEMLAVNGVGQKKLEKYADPFLDLIEMHLT 608
>gi|238750693|ref|ZP_04612192.1| ATP-dependent DNA helicase recQ [Yersinia rohdei ATCC 43380]
gi|238711083|gb|EEQ03302.1| ATP-dependent DNA helicase recQ [Yersinia rohdei ATCC 43380]
Length = 610
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 84/178 (47%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++GLG++ S W ++ QLI G L++ I ++ + +++
Sbjct: 444 NQRIREFGHDKLSVYGLGREQSHEHWVSVLRQLIHLGLLSQNIA-MFSALQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP + L L + + + +SSA ++ G D +L+ L +
Sbjct: 497 -AARPVLRAELPLQLAVPRIQSLKA----------RSSANQKSYG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P T + L +++GV Q + G + IR
Sbjct: 545 RKSIADEGNIPPYVVFNDTTLLEMAEQMPITASELLSVNGVGQRKLERFGAPFMAMIR 602
>gi|357059803|ref|ZP_09120582.1| ATP-dependent DNA helicase RecQ [Alloprevotella rava F0323]
gi|355377445|gb|EHG24664.1| ATP-dependent DNA helicase RecQ [Alloprevotella rava F0323]
Length = 726
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++ V D + D+L G G++ + W + Q + GYL + I++ Y + ++ +G Q+L
Sbjct: 442 TESVRDYKHDELEDFGCGENEDEHIWNAVIRQALLTGYLNKEIEN-YGVLKITDKGHQFL 500
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
T + +++ +++ S+ + +++ +LY MLL
Sbjct: 501 EK-----------TVSFQIIKDQDYSETSA-------TEPVQSGADCAVAPELYDMLLGL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RKK+++ PY + D +++ +A P T L NI GV + +G IR
Sbjct: 543 RKKMSKELQVPPYVIFQDPSLEAMATVFPQTLEELKNIPGVGEGKAKRYGKEFCDLIR 600
>gi|312971887|ref|ZP_07786061.1| ATP-dependent DNA helicase RecQ [Escherichia coli 1827-70]
gi|310334264|gb|EFQ00469.1| ATP-dependent DNA helicase RecQ [Escherichia coli 1827-70]
Length = 609
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|404377215|ref|ZP_10982353.1| ATP-dependent DNA helicase recQ [Escherichia sp. 1_1_43]
gi|422769226|ref|ZP_16822947.1| ATP-dependent DNA helicase RecQ [Escherichia coli E1520]
gi|226838725|gb|EEH70753.1| ATP-dependent DNA helicase recQ [Escherichia sp. 1_1_43]
gi|323934125|gb|EGB30560.1| ATP-dependent DNA helicase RecQ [Escherichia coli E1520]
Length = 611
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|332159828|ref|YP_004296405.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386310846|ref|YP_006006902.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418243645|ref|ZP_12870111.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|420261107|ref|ZP_14763764.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|433548693|ref|ZP_20504742.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica IP 10393]
gi|318607629|emb|CBY29127.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325664058|gb|ADZ40702.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862578|emb|CBX72731.1| ATP-dependent DNA helicase recQ [Yersinia enterocolitica W22703]
gi|351776862|gb|EHB19136.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|404511396|gb|EKA25274.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|431790342|emb|CCO67782.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica IP 10393]
Length = 616
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 85/178 (47%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+G++ S W ++ QLI G L++ I ++ + +++
Sbjct: 444 NQRIREFGHDKLSVYGIGREQSHEHWVSVLRQLIHLGLLSQNIA-MFSALQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP + L L + + + ++SSA ++ G D +L+ L +
Sbjct: 497 -AARPVLRAELPLQLAVPRIQSLK----------VRSSANQKSYG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P T + L +++GV Q + G + IR
Sbjct: 545 RKSIADEGNIPPYVVFNDATLLEMAEQMPITASELLSVNGVGQRKLERFGAPFMAMIR 602
>gi|296105298|ref|YP_003615444.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059757|gb|ADF64495.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 630
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GKD S W ++ QLI G+ T+ I Q
Sbjct: 465 NQRIRDMGHDKLPVYGIGKDQSHEHWVSIIRQLIHLGFATQNI--------AQHSALQLT 516
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP G++ E + V LK ++ G D +L+ L +
Sbjct: 517 EAARP--------VLRGDV----ELKLAVPRVVALKPRVMQKSYG-GNYDRKLFAKLRKL 563
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P + + + +++GV + G + IR
Sbjct: 564 RKAIADEENIPPYVVFNDATLIEMAEQMPLSASEMLSVNGVGTRKLERFGKEFMALIR 621
>gi|417173851|ref|ZP_12003647.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.2608]
gi|417185330|ref|ZP_12010731.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0624]
gi|386176543|gb|EIH54022.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.2608]
gi|386182630|gb|EIH65386.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0624]
Length = 611
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|417149341|ref|ZP_11989432.1| ATP-dependent DNA helicase RecQ [Escherichia coli 1.2264]
gi|386161562|gb|EIH23365.1| ATP-dependent DNA helicase RecQ [Escherichia coli 1.2264]
Length = 611
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|387614520|ref|YP_006117636.1| ATP-dependent DNA helicase [Escherichia coli ETEC H10407]
gi|309704256|emb|CBJ03604.1| ATP-dependent DNA helicase [Escherichia coli ETEC H10407]
Length = 609
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|386817166|ref|ZP_10104384.1| ATP-dependent DNA helicase RecQ [Thiothrix nivea DSM 5205]
gi|386421742|gb|EIJ35577.1| ATP-dependent DNA helicase RecQ [Thiothrix nivea DSM 5205]
Length = 630
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 20/172 (11%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D+L +G+G +HS W+ + QLI+ GYL+ V V G G D
Sbjct: 453 DQLSTYGIGTEHSQAEWRNIFRQLIALGYLS---------VDVDGHG----GLRLTDKSR 499
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATL----ENEGFSEADMQLYHMLLEERKKLA 125
PLL GE+ E + V ++ A E E S A L+ L R +LA
Sbjct: 500 PLL---RGEIELHLRKEQMRERVRKERNRAERTPRPEFEEMSTAAKALFEQLRNLRTRLA 556
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ PY + D T+ +A +P T + +I G+ + + +G L I
Sbjct: 557 KEQEVPPYVIFHDSTLLHMANEQPQTLEAMRSIPGIGERKLEQYGQAFLNVI 608
>gi|198283958|ref|YP_002220279.1| ATP-dependent DNA helicase RecQ [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218665854|ref|YP_002426593.1| ATP-dependent DNA helicase RecQ [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198248479|gb|ACH84072.1| ATP-dependent DNA helicase RecQ [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218518067|gb|ACK78653.1| ATP-dependent DNA helicase RecQ [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 603
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 22/168 (13%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D+L ++G+GK+ S+N W+ L L+ G L E D + + +S S+RP
Sbjct: 452 DRLSVYGIGKELSANAWRALFRHLLLRG-LVEVDHDGHGGMRLSP-------SSRP---- 499
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
L N E + +HE+ + + + D L+ L + R++LA+ G
Sbjct: 500 ---LLRNEEKLTLRQHESPVPRQREQRPE-------IAPRDTALWEALRQHRRELAQAQG 549
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D T+ ++ RP LA + G+ + + +G L+ +
Sbjct: 550 VPPYVIFHDATLMEMLHRRPRDLEALAALPGIGERKLAAYGTSFLKIL 597
>gi|433323990|ref|ZP_20401319.1| ATP-dependent DNA helicase RecQ [Escherichia coli J96]
gi|433327299|ref|ZP_20403746.1| ATP-dependent DNA helicase RecQ [Escherichia coli J96]
gi|432344992|gb|ELL39536.1| ATP-dependent DNA helicase RecQ [Escherichia coli J96]
gi|432347541|gb|ELL42000.1| ATP-dependent DNA helicase RecQ [Escherichia coli J96]
Length = 609
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|399036889|ref|ZP_10733853.1| ATP-dependent DNA helicase RecQ [Rhizobium sp. CF122]
gi|398065716|gb|EJL57337.1| ATP-dependent DNA helicase RecQ [Rhizobium sp. CF122]
Length = 619
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 14/164 (8%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G GKD ++ W+++ QL+++ +++ D + + + Q SAR + + +
Sbjct: 466 VFGAGKDLPASTWQSVFRQLLAHSFIS-VAHDEFGAIKLDQ-------SARAVFKKEINV 517
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
+ E AT G S D QL+ + ER +A+ G APY
Sbjct: 518 VLRKDY-----REKFGKGAKGRTPQAT-RGTGLSGRDEQLFQAMRAERMSIAKEMGVAPY 571
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D T+ A RP+T + +I GV + +G ++ I
Sbjct: 572 VIFPDTTLIAFATERPTTDHEMLSISGVGATKLERYGRRFMEII 615
>gi|343518127|ref|ZP_08755121.1| RQC domain protein [Haemophilus pittmaniae HK 85]
gi|343393923|gb|EGV06473.1| RQC domain protein [Haemophilus pittmaniae HK 85]
Length = 205
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 22/180 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDV-YRTVSVSQQGKQY 59
++K+ + + L + G+GKD S W+++ QLI G++ + + D + T+ +++ K
Sbjct: 32 NQKITERGHESLSVFGIGKDKSKEHWQSVIRQLIHLGFIQQVLSDFNHATLQLTESAKPV 91
Query: 60 L-GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLL 118
L G + P + + ++ A +H T + D L+ L
Sbjct: 92 LKGEIELELALPRISAIS-QLTRAPQHRT-------------------ANYDKDLFARLR 131
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A PY + D T++++A P + A + I+GV Q + G L IR
Sbjct: 132 FLRKQIADKENIPPYIVFNDATLQEMAQYLPCSNAEMLQINGVGQIKLDRFGQAFLHLIR 191
>gi|300904077|ref|ZP_07121957.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 84-1]
gi|301303719|ref|ZP_07209840.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 124-1]
gi|415865367|ref|ZP_11538229.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 85-1]
gi|300403957|gb|EFJ87495.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 84-1]
gi|300841019|gb|EFK68779.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 124-1]
gi|315254188|gb|EFU34156.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 85-1]
Length = 611
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|218556387|ref|YP_002389301.1| ATP-dependent DNA helicase RecQ [Escherichia coli IAI1]
gi|218363156|emb|CAR00797.1| ATP-dependent DNA helicase [Escherichia coli IAI1]
Length = 609
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|164687365|ref|ZP_02211393.1| hypothetical protein CLOBAR_01006 [Clostridium bartlettii DSM
16795]
gi|164603789|gb|EDQ97254.1| ATP-dependent DNA helicase RecQ [Clostridium bartlettii DSM 16795]
Length = 839
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 26/179 (14%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV++ F+KL +G+ KD+++ KT L+S+G+L + K+ L
Sbjct: 456 NKKVLELGFNKLSTYGIMKDYTNEGLKTFINTLVSHGFL---------------EVKENL 500
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
GS P + L V E I ++K + + N+ +L+ +L +
Sbjct: 501 GSR--GSFPTISLNAQSSKVLKGE---IKVQFKEVKIAKEVRNKN------ELFGILSDL 549
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
RK +A APY + GD T+ +A P+ + L NI GV Q +G + I
Sbjct: 550 RKTIAVKEKIAPYMVFGDSTLLSMANTYPTDEDELLNISGVGQIKYEKYGQDFISAIEQ 608
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 113/238 (47%), Gaps = 20/238 (8%)
Query: 80 VDAEEHETISSNVGDLKSSATLENEGFSEA--DMQLYHMLLEERKKLARVTGTAPYALCG 137
+D E SNV + K A + F E D +LY L + R K AR+ +
Sbjct: 615 IDKSTLEEDKSNVLNEKEDA---KQDFFEVTTDQKLYEQLKKVRGKYARIESLPHRMIMT 671
Query: 138 DQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTA 197
T+K+I+ P +L ++ G+ + +G+ +++ + ++ N+ ++ K +
Sbjct: 672 KNTLKEISGRYPLDVEKLNDVAGLGPKKIDKYGEAIIEVVNKYVEENNIDVEWKEKKKKK 731
Query: 198 FTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVS 257
++++ ++ K A + ++ G+ ++ ++N + +++ Y+ E +
Sbjct: 732 ------LILDGESR--KPKEIALDLLNQ-GIDVKTVSN----KLEVSVSSILGYICEYIK 778
Query: 258 EGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKACLV 315
+ ++++ + + D+ IQ++I+K G +DKLK IK LPD I Y I+A ++
Sbjct: 779 DKNELHF-KFNPTIYYCDDEKELIQKSINKFG-EDKLKDIKQSLPDYIKYESIRAVII 834
>gi|157157237|ref|YP_001465308.1| ATP-dependent DNA helicase RecQ [Escherichia coli E24377A]
gi|157079267|gb|ABV18975.1| ATP-dependent DNA helicase RecQ [Escherichia coli E24377A]
Length = 609
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|386707085|ref|YP_006170932.1| ATP-dependent DNA helicase RecQ [Escherichia coli P12b]
gi|383105253|gb|AFG42762.1| ATP-dependent DNA helicase RecQ [Escherichia coli P12b]
Length = 563
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 398 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 449
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 450 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 496
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 497 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 554
>gi|419938599|ref|ZP_14455425.1| ATP-dependent DNA helicase RecQ [Escherichia coli 75]
gi|388409947|gb|EIL70208.1| ATP-dependent DNA helicase RecQ [Escherichia coli 75]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|417228931|ref|ZP_12030689.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.0959]
gi|386208266|gb|EII12771.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.0959]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|417610582|ref|ZP_12261072.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_DG131-3]
gi|345353354|gb|EGW85588.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_DG131-3]
Length = 603
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 438 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 489
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 490 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 536
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 537 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 594
>gi|260846402|ref|YP_003224180.1| ATP-dependent DNA helicase RecQ [Escherichia coli O103:H2 str.
12009]
gi|419302912|ref|ZP_13844902.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11C]
gi|419869038|ref|ZP_14391264.1| ATP-dependent DNA helicase RecQ [Escherichia coli O103:H2 str.
CVM9450]
gi|257761549|dbj|BAI33046.1| ATP-dependent DNA helicase RecQ [Escherichia coli O103:H2 str.
12009]
gi|378146097|gb|EHX07251.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11C]
gi|388343371|gb|EIL09335.1| ATP-dependent DNA helicase RecQ [Escherichia coli O103:H2 str.
CVM9450]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|167765436|ref|ZP_02437549.1| hypothetical protein BACSTE_03826 [Bacteroides stercoris ATCC
43183]
gi|167697064|gb|EDS13643.1| ATP-dependent DNA helicase RecQ [Bacteroides stercoris ATCC 43183]
Length = 727
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 19/168 (11%)
Query: 12 LLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPL 71
L + G G W + Q + GYLT+ +++ Y + V+ GK++L H
Sbjct: 454 LEVFGSGMGEEDKTWNAVIRQALIAGYLTKEVEN-YGLLKVTDAGKKFL-----KHPKSF 507
Query: 72 LLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTA 131
+T + + + EE A G D LY ML + RKKL++
Sbjct: 508 KITEDNDFEEVEEE-------------APARGGGACAVDPALYSMLKDLRKKLSKKLEVP 554
Query: 132 PYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
PY + D +++ +A P T L NI GV +G+ + I+
Sbjct: 555 PYVIFQDPSLEAMATIYPITLDELQNIPGVGAGKAKRYGEEFCKLIKR 602
>gi|419863367|ref|ZP_14385906.1| ATP-dependent DNA helicase RecQ [Escherichia coli O103:H25 str.
CVM9340]
gi|388342947|gb|EIL08948.1| ATP-dependent DNA helicase RecQ [Escherichia coli O103:H25 str.
CVM9340]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|422355837|ref|ZP_16436541.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 117-3]
gi|324016198|gb|EGB85417.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 117-3]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|432855825|ref|ZP_20083516.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE144]
gi|431397110|gb|ELG80571.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE144]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|432555903|ref|ZP_19792618.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE47]
gi|431080717|gb|ELD87511.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE47]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|401765702|ref|YP_006580709.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400177236|gb|AFP72085.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GKD S W ++ QLI G+ T+ I Q
Sbjct: 444 NQRIRDMGHDKLPVYGIGKDQSHEHWVSIIRQLIHLGFATQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP G++ E + V LK ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGDV----ELKLAVPRVVALKPRVMQKSYG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P + + + +++GV + G + IR
Sbjct: 543 RKAIADEENIPPYVVFNDATLIEMAEQMPLSASEMLSVNGVGTRKLERFGKEFMALIR 600
>gi|300917877|ref|ZP_07134511.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 115-1]
gi|432531614|ref|ZP_19768636.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE234]
gi|300414922|gb|EFJ98232.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 115-1]
gi|431066937|gb|ELD75555.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE234]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|15804414|ref|NP_290454.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EDL933]
gi|15834006|ref|NP_312779.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
Sakai]
gi|26250563|ref|NP_756603.1| ATP-dependent DNA helicase RecQ [Escherichia coli CFT073]
gi|91213348|ref|YP_543334.1| ATP-dependent DNA helicase RecQ [Escherichia coli UTI89]
gi|117626081|ref|YP_859404.1| ATP-dependent DNA helicase RecQ [Escherichia coli APEC O1]
gi|168750361|ref|ZP_02775383.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4113]
gi|168753724|ref|ZP_02778731.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4401]
gi|168763952|ref|ZP_02788959.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4501]
gi|168768108|ref|ZP_02793115.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4486]
gi|168775622|ref|ZP_02800629.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4196]
gi|168780726|ref|ZP_02805733.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4076]
gi|168786665|ref|ZP_02811672.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC869]
gi|168801109|ref|ZP_02826116.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC508]
gi|193065720|ref|ZP_03046785.1| ATP-dependent DNA helicase RecQ [Escherichia coli E22]
gi|193068067|ref|ZP_03049032.1| ATP-dependent DNA helicase RecQ [Escherichia coli E110019]
gi|194434028|ref|ZP_03066298.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 1012]
gi|195938114|ref|ZP_03083496.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4024]
gi|208806062|ref|ZP_03248399.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4206]
gi|208812810|ref|ZP_03254139.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4045]
gi|208821321|ref|ZP_03261641.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4042]
gi|209400089|ref|YP_002273341.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4115]
gi|217325284|ref|ZP_03441368.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
TW14588]
gi|227888592|ref|ZP_04006397.1| ATP-dependent DNA helicase RecQ [Escherichia coli 83972]
gi|237702832|ref|ZP_04533313.1| ATP-dependent DNA helicase recQ [Escherichia sp. 3_2_53FAA]
gi|261225598|ref|ZP_05939879.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255644|ref|ZP_05948177.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
FRIK966]
gi|291285239|ref|YP_003502057.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
CB9615]
gi|300818704|ref|ZP_07098911.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 107-1]
gi|300939956|ref|ZP_07154585.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 21-1]
gi|300950413|ref|ZP_07164336.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 116-1]
gi|300955172|ref|ZP_07167569.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 175-1]
gi|300985659|ref|ZP_07177546.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 45-1]
gi|301029039|ref|ZP_07192192.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 196-1]
gi|301047295|ref|ZP_07194381.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 185-1]
gi|301328411|ref|ZP_07221497.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 78-1]
gi|301646111|ref|ZP_07246011.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 146-1]
gi|306815139|ref|ZP_07449292.1| ATP-dependent DNA helicase RecQ [Escherichia coli NC101]
gi|331644555|ref|ZP_08345675.1| ATP-dependent DNA helicase RecQ [Escherichia coli H736]
gi|331655508|ref|ZP_08356501.1| ATP-dependent DNA helicase RecQ [Escherichia coli M718]
gi|331665474|ref|ZP_08366373.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA143]
gi|331675289|ref|ZP_08376040.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA280]
gi|332282668|ref|ZP_08395081.1| ATP-dependent DNA helicase recQ [Shigella sp. D9]
gi|386597646|ref|YP_006094046.1| RecQ familyATP-dependent DNA helicase [Escherichia coli DH1]
gi|386606401|ref|YP_006112701.1| ATP-dependent DNA helicase RecQ [Escherichia coli UM146]
gi|386626719|ref|YP_006146447.1| ATP-dependent DNA helicase [Escherichia coli O7:K1 str. CE10]
gi|386631763|ref|YP_006151483.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. 'clone D
i2']
gi|386636683|ref|YP_006156402.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. 'clone D
i14']
gi|387619114|ref|YP_006122136.1| ATP-dependent DNA helicase RecQ [Escherichia coli O83:H1 str. NRG
857C]
gi|387623474|ref|YP_006131102.1| ATP-dependent DNA helicase RecQ [Escherichia coli DH1]
gi|387885050|ref|YP_006315352.1| ATP-dependent DNA helicase RecQ [Escherichia coli Xuzhou21]
gi|415875441|ref|ZP_11542196.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 79-10]
gi|416261809|ref|ZP_11640557.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae CDC 74-1112]
gi|416284789|ref|ZP_11647410.1| ATP-dependent DNA helicase RecQ [Shigella boydii ATCC 9905]
gi|416307593|ref|ZP_11654634.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
1044]
gi|416319727|ref|ZP_11662279.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC1212]
gi|416326935|ref|ZP_11667010.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
1125]
gi|416778771|ref|ZP_11876102.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
G5101]
gi|416790129|ref|ZP_11880995.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H- str.
493-89]
gi|416801903|ref|ZP_11885883.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H- str. H
2687]
gi|416812763|ref|ZP_11890805.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
3256-97]
gi|416823216|ref|ZP_11895422.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str. USDA
5905]
gi|416833537|ref|ZP_11900417.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
LSU-61]
gi|417087782|ref|ZP_11954640.1| ATP-dependent DNA helicase RecQ [Escherichia coli cloneA_i1]
gi|417125722|ref|ZP_11973683.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0246]
gi|417135031|ref|ZP_11979816.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.0588]
gi|417156682|ref|ZP_11994306.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0497]
gi|417169247|ref|ZP_12001502.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0741]
gi|417249485|ref|ZP_12041269.1| ATP-dependent DNA helicase RecQ [Escherichia coli 4.0967]
gi|417265179|ref|ZP_12052558.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2.3916]
gi|417273258|ref|ZP_12060605.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2.4168]
gi|417279255|ref|ZP_12066565.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.2303]
gi|417293640|ref|ZP_12080919.1| ATP-dependent DNA helicase RecQ [Escherichia coli B41]
gi|417296259|ref|ZP_12083506.1| ATP-dependent DNA helicase RecQ [Escherichia coli 900105 (10e)]
gi|417868124|ref|ZP_12513155.1| hypothetical protein C22711_5047 [Escherichia coli O104:H4 str.
C227-11]
gi|418040283|ref|ZP_12678529.1| ATP-dependent DNA helicase RecQ [Escherichia coli W26]
gi|418960294|ref|ZP_13512185.1| ATP-dependent DNA helicase RecQ [Escherichia coli J53]
gi|419804829|ref|ZP_14329980.1| ATP-dependent DNA helicase RecQ [Escherichia coli AI27]
gi|419926606|ref|ZP_14444357.1| ATP-dependent DNA helicase RecQ [Escherichia coli 541-1]
gi|419943310|ref|ZP_14459870.1| ATP-dependent DNA helicase RecQ [Escherichia coli HM605]
gi|421777493|ref|ZP_16214088.1| ATP-dependent DNA helicase RecQ [Escherichia coli AD30]
gi|422361452|ref|ZP_16442074.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 110-3]
gi|422364103|ref|ZP_16444631.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 153-1]
gi|422752068|ref|ZP_16805973.1| ATP-dependent DNA helicase RecQ [Escherichia coli H252]
gi|422757541|ref|ZP_16811359.1| ATP-dependent DNA helicase RecQ [Escherichia coli H263]
gi|422764373|ref|ZP_16818123.1| ATP-dependent DNA helicase RecQ [Escherichia coli E1167]
gi|422773902|ref|ZP_16827583.1| ATP-dependent DNA helicase RecQ [Escherichia coli E482]
gi|422818975|ref|ZP_16867187.1| ATP-dependent DNA helicase recQ [Escherichia coli M919]
gi|422836240|ref|ZP_16884288.1| ATP-dependent DNA helicase recQ [Escherichia coli E101]
gi|422842112|ref|ZP_16890078.1| ATP-dependent DNA helicase recQ [Escherichia coli H397]
gi|422963299|ref|ZP_16973143.1| ATP-dependent DNA helicase recQ [Escherichia coli H494]
gi|422990089|ref|ZP_16980861.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
C227-11]
gi|422996987|ref|ZP_16987749.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
C236-11]
gi|423002081|ref|ZP_16992833.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
09-7901]
gi|423005737|ref|ZP_16996482.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
04-8351]
gi|423012298|ref|ZP_17003030.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-3677]
gi|423021529|ref|ZP_17012234.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4404]
gi|423026687|ref|ZP_17017381.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4522]
gi|423032514|ref|ZP_17023200.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4623]
gi|423035353|ref|ZP_17026030.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423040509|ref|ZP_17031178.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423047194|ref|ZP_17037853.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423055733|ref|ZP_17044539.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423057736|ref|ZP_17046535.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423703345|ref|ZP_17677777.1| ATP-dependent DNA helicase recQ [Escherichia coli H730]
gi|427807018|ref|ZP_18974085.1| ATP-dependent DNA helicase [Escherichia coli chi7122]
gi|427811606|ref|ZP_18978671.1| ATP-dependent DNA helicase [Escherichia coli]
gi|429721569|ref|ZP_19256483.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429773463|ref|ZP_19305477.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02030]
gi|429778828|ref|ZP_19310793.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02033-1]
gi|429782663|ref|ZP_19314587.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02092]
gi|429788056|ref|ZP_19319942.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02093]
gi|429794495|ref|ZP_19326335.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02281]
gi|429800455|ref|ZP_19332243.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02318]
gi|429804067|ref|ZP_19335823.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02913]
gi|429808715|ref|ZP_19340430.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-03439]
gi|429814414|ref|ZP_19346084.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-04080]
gi|429819617|ref|ZP_19351246.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-03943]
gi|429905937|ref|ZP_19371912.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429910070|ref|ZP_19376031.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429915970|ref|ZP_19381915.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429921018|ref|ZP_19386944.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429926826|ref|ZP_19392736.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429930757|ref|ZP_19396656.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429937299|ref|ZP_19403184.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429942978|ref|ZP_19408849.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429945657|ref|ZP_19411516.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429953220|ref|ZP_19419064.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429956566|ref|ZP_19422396.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432360276|ref|ZP_19603487.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE4]
gi|432365076|ref|ZP_19608229.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE5]
gi|432367297|ref|ZP_19610409.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE10]
gi|432383719|ref|ZP_19626643.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE15]
gi|432389627|ref|ZP_19632505.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE16]
gi|432394491|ref|ZP_19637307.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE21]
gi|432414086|ref|ZP_19656738.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE39]
gi|432419345|ref|ZP_19661934.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE44]
gi|432434048|ref|ZP_19676469.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE187]
gi|432438779|ref|ZP_19681155.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE188]
gi|432443352|ref|ZP_19685684.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE189]
gi|432448496|ref|ZP_19690791.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE191]
gi|432452089|ref|ZP_19694343.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE193]
gi|432458964|ref|ZP_19701137.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE201]
gi|432483235|ref|ZP_19725182.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE210]
gi|432487578|ref|ZP_19729484.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE212]
gi|432493074|ref|ZP_19734902.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE214]
gi|432506714|ref|ZP_19748431.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE220]
gi|432516211|ref|ZP_19753425.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE224]
gi|432526295|ref|ZP_19763406.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE230]
gi|432528681|ref|ZP_19765751.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE233]
gi|432571096|ref|ZP_19807600.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE53]
gi|432576067|ref|ZP_19812534.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE55]
gi|432578095|ref|ZP_19814540.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE56]
gi|432590276|ref|ZP_19826626.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE58]
gi|432595035|ref|ZP_19831345.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE60]
gi|432600079|ref|ZP_19836347.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE62]
gi|432605259|ref|ZP_19841468.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE67]
gi|432613825|ref|ZP_19849981.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE72]
gi|432629445|ref|ZP_19865409.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE77]
gi|432634727|ref|ZP_19870624.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE81]
gi|432648493|ref|ZP_19884277.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE86]
gi|432653476|ref|ZP_19889212.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE87]
gi|432658058|ref|ZP_19893754.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE93]
gi|432663070|ref|ZP_19898697.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE111]
gi|432672915|ref|ZP_19908432.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE119]
gi|432677001|ref|ZP_19912440.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE142]
gi|432687652|ref|ZP_19922939.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE156]
gi|432689149|ref|ZP_19924414.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE161]
gi|432701337|ref|ZP_19936480.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE169]
gi|432706554|ref|ZP_19941647.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE171]
gi|432739319|ref|ZP_19974046.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE42]
gi|432747796|ref|ZP_19982457.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE43]
gi|432752279|ref|ZP_19986855.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE29]
gi|432756779|ref|ZP_19991322.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE22]
gi|432768201|ref|ZP_20002590.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE50]
gi|432780984|ref|ZP_20015199.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE59]
gi|432785808|ref|ZP_20019983.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE63]
gi|432789848|ref|ZP_20023974.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE65]
gi|432795081|ref|ZP_20029152.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE78]
gi|432796592|ref|ZP_20030625.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE79]
gi|432808068|ref|ZP_20041980.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE91]
gi|432818612|ref|ZP_20052333.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE118]
gi|432824744|ref|ZP_20058407.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE123]
gi|432847043|ref|ZP_20079554.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE141]
gi|432866699|ref|ZP_20089036.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE146]
gi|432878187|ref|ZP_20095636.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE154]
gi|432907645|ref|ZP_20116028.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE194]
gi|432931567|ref|ZP_20131599.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE184]
gi|432940641|ref|ZP_20138542.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE183]
gi|432943514|ref|ZP_20140349.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE196]
gi|432951080|ref|ZP_20144823.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE197]
gi|432964632|ref|ZP_20153702.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE202]
gi|432974095|ref|ZP_20162937.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE207]
gi|432976046|ref|ZP_20164877.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE209]
gi|432987668|ref|ZP_20176378.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE215]
gi|432997605|ref|ZP_20186184.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE218]
gi|433002200|ref|ZP_20190717.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE223]
gi|433002724|ref|ZP_20191232.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE227]
gi|433010024|ref|ZP_20198434.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE229]
gi|433016140|ref|ZP_20204466.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE104]
gi|433025731|ref|ZP_20213696.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE106]
gi|433035751|ref|ZP_20223437.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE112]
gi|433040839|ref|ZP_20228423.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE113]
gi|433045355|ref|ZP_20232827.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE117]
gi|433050297|ref|ZP_20237614.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE120]
gi|433060346|ref|ZP_20247376.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE124]
gi|433065296|ref|ZP_20252196.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE125]
gi|433084749|ref|ZP_20271193.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE133]
gi|433089549|ref|ZP_20275906.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE137]
gi|433103420|ref|ZP_20289488.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE145]
gi|433117753|ref|ZP_20303531.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE153]
gi|433127456|ref|ZP_20312995.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE160]
gi|433132402|ref|ZP_20317821.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE163]
gi|433137074|ref|ZP_20322396.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE166]
gi|433141529|ref|ZP_20326765.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE167]
gi|433146459|ref|ZP_20331588.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE168]
gi|433151482|ref|ZP_20336476.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE174]
gi|433156014|ref|ZP_20340937.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE176]
gi|433165840|ref|ZP_20350564.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE179]
gi|433170836|ref|ZP_20355450.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE180]
gi|433175714|ref|ZP_20360216.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE232]
gi|433190628|ref|ZP_20374713.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE88]
gi|433195880|ref|ZP_20379845.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE90]
gi|433200586|ref|ZP_20384466.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE94]
gi|433209973|ref|ZP_20393634.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE97]
gi|433214852|ref|ZP_20398424.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE99]
gi|442591349|ref|ZP_21009834.1| ATP-dependent DNA helicase RecQ [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|442603448|ref|ZP_21018338.1| ATP-dependent DNA helicase RecQ [Escherichia coli Nissle 1917]
gi|452967363|ref|ZP_21965590.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4009]
gi|12518696|gb|AAG59018.1|AE005613_11 ATP-dependent DNA helicase [Escherichia coli O157:H7 str. EDL933]
gi|26110993|gb|AAN83177.1|AE016769_292 ATP-dependent DNA helicase recQ [Escherichia coli CFT073]
gi|13364228|dbj|BAB38175.1| ATP-dependent DNA helicase [Escherichia coli O157:H7 str. Sakai]
gi|91074922|gb|ABE09803.1| ATP-dependent DNA helicase [Escherichia coli UTI89]
gi|115515205|gb|ABJ03280.1| ATP-dependent DNA helicase [Escherichia coli APEC O1]
gi|187768838|gb|EDU32682.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4196]
gi|188015421|gb|EDU53543.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4113]
gi|189001596|gb|EDU70582.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4076]
gi|189358975|gb|EDU77394.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4401]
gi|189362723|gb|EDU81142.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4486]
gi|189365963|gb|EDU84379.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4501]
gi|189373237|gb|EDU91653.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC869]
gi|189376685|gb|EDU95101.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC508]
gi|192926687|gb|EDV81316.1| ATP-dependent DNA helicase RecQ [Escherichia coli E22]
gi|192958687|gb|EDV89125.1| ATP-dependent DNA helicase RecQ [Escherichia coli E110019]
gi|194417686|gb|EDX33785.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 1012]
gi|208725863|gb|EDZ75464.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4206]
gi|208734087|gb|EDZ82774.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4045]
gi|208741444|gb|EDZ89126.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4042]
gi|209161489|gb|ACI38922.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4115]
gi|209753168|gb|ACI74891.1| threonine efflux protein [Escherichia coli]
gi|209753170|gb|ACI74892.1| threonine efflux protein [Escherichia coli]
gi|209753172|gb|ACI74893.1| threonine efflux protein [Escherichia coli]
gi|209753174|gb|ACI74894.1| threonine efflux protein [Escherichia coli]
gi|209753176|gb|ACI74895.1| threonine efflux protein [Escherichia coli]
gi|217321505|gb|EEC29929.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
TW14588]
gi|226903003|gb|EEH89262.1| ATP-dependent DNA helicase recQ [Escherichia sp. 3_2_53FAA]
gi|227834431|gb|EEJ44897.1| ATP-dependent DNA helicase RecQ [Escherichia coli 83972]
gi|260451335|gb|ACX41757.1| ATP-dependent DNA helicase, RecQ family [Escherichia coli DH1]
gi|290765112|gb|ADD59073.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
CB9615]
gi|299878002|gb|EFI86213.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 196-1]
gi|300300814|gb|EFJ57199.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 185-1]
gi|300317889|gb|EFJ67673.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 175-1]
gi|300408043|gb|EFJ91581.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 45-1]
gi|300450259|gb|EFK13879.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 116-1]
gi|300455218|gb|EFK18711.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 21-1]
gi|300528670|gb|EFK49732.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 107-1]
gi|300845161|gb|EFK72921.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 78-1]
gi|301075637|gb|EFK90443.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 146-1]
gi|305851508|gb|EFM51962.1| ATP-dependent DNA helicase RecQ [Escherichia coli NC101]
gi|307628885|gb|ADN73189.1| ATP-dependent DNA helicase RecQ [Escherichia coli UM146]
gi|312948375|gb|ADR29202.1| ATP-dependent DNA helicase RecQ [Escherichia coli O83:H1 str. NRG
857C]
gi|315138398|dbj|BAJ45557.1| ATP-dependent DNA helicase RecQ [Escherichia coli DH1]
gi|315284755|gb|EFU44200.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 110-3]
gi|315293200|gb|EFU52552.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 153-1]
gi|320176754|gb|EFW51788.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae CDC 74-1112]
gi|320179831|gb|EFW54778.1| ATP-dependent DNA helicase RecQ [Shigella boydii ATCC 9905]
gi|320191083|gb|EFW65733.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC1212]
gi|320639307|gb|EFX08929.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
G5101]
gi|320644692|gb|EFX13742.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H- str.
493-89]
gi|320650017|gb|EFX18520.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H- str. H
2687]
gi|320655364|gb|EFX23306.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320660989|gb|EFX28432.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str. USDA
5905]
gi|320666113|gb|EFX33127.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
LSU-61]
gi|323938957|gb|EGB35176.1| ATP-dependent DNA helicase RecQ [Escherichia coli E482]
gi|323949294|gb|EGB45184.1| ATP-dependent DNA helicase RecQ [Escherichia coli H252]
gi|323954029|gb|EGB49827.1| ATP-dependent DNA helicase RecQ [Escherichia coli H263]
gi|324115715|gb|EGC09650.1| ATP-dependent DNA helicase RecQ [Escherichia coli E1167]
gi|326344280|gb|EGD68040.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
1125]
gi|326347892|gb|EGD71606.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
1044]
gi|331036227|gb|EGI08462.1| ATP-dependent DNA helicase RecQ [Escherichia coli H736]
gi|331046829|gb|EGI18913.1| ATP-dependent DNA helicase RecQ [Escherichia coli M718]
gi|331057372|gb|EGI29361.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA143]
gi|331067575|gb|EGI38979.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA280]
gi|332105020|gb|EGJ08366.1| ATP-dependent DNA helicase recQ [Shigella sp. D9]
gi|341921413|gb|EGT71013.1| hypothetical protein C22711_5047 [Escherichia coli O104:H4 str.
C227-11]
gi|342929411|gb|EGU98133.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 79-10]
gi|349740455|gb|AEQ15161.1| ATP-dependent DNA helicase [Escherichia coli O7:K1 str. CE10]
gi|354857604|gb|EHF18058.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
C236-11]
gi|354861156|gb|EHF21596.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
C227-11]
gi|354862964|gb|EHF23400.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
04-8351]
gi|354870560|gb|EHF30963.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
09-7901]
gi|354876413|gb|EHF36774.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-3677]
gi|354885260|gb|EHF45564.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4404]
gi|354888660|gb|EHF48915.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4522]
gi|354892140|gb|EHF52353.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4623]
gi|354904405|gb|EHF64498.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354907666|gb|EHF67724.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354910042|gb|EHF70071.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354912556|gb|EHF72556.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C4]
gi|354920351|gb|EHF80286.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C5]
gi|355349511|gb|EHF98716.1| ATP-dependent DNA helicase RecQ [Escherichia coli cloneA_i1]
gi|355422662|gb|AER86859.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. 'clone D
i2']
gi|355427582|gb|AER91778.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. 'clone D
i14']
gi|371591795|gb|EHN80734.1| ATP-dependent DNA helicase recQ [Escherichia coli H494]
gi|371602176|gb|EHN90887.1| ATP-dependent DNA helicase recQ [Escherichia coli H397]
gi|371609589|gb|EHN98126.1| ATP-dependent DNA helicase recQ [Escherichia coli E101]
gi|383476777|gb|EID68710.1| ATP-dependent DNA helicase RecQ [Escherichia coli W26]
gi|384376901|gb|EIE34801.1| ATP-dependent DNA helicase RecQ [Escherichia coli J53]
gi|384472213|gb|EIE56273.1| ATP-dependent DNA helicase RecQ [Escherichia coli AI27]
gi|385537533|gb|EIF84404.1| ATP-dependent DNA helicase recQ [Escherichia coli M919]
gi|385708484|gb|EIG45496.1| ATP-dependent DNA helicase recQ [Escherichia coli H730]
gi|386145721|gb|EIG92178.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0246]
gi|386152885|gb|EIH04174.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.0588]
gi|386165432|gb|EIH31952.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0497]
gi|386170387|gb|EIH42447.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0741]
gi|386219806|gb|EII36270.1| ATP-dependent DNA helicase RecQ [Escherichia coli 4.0967]
gi|386221361|gb|EII43805.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2.3916]
gi|386234435|gb|EII66413.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2.4168]
gi|386238032|gb|EII74972.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.2303]
gi|386251828|gb|EIJ01520.1| ATP-dependent DNA helicase RecQ [Escherichia coli B41]
gi|386259703|gb|EIJ15177.1| ATP-dependent DNA helicase RecQ [Escherichia coli 900105 (10e)]
gi|386798508|gb|AFJ31542.1| ATP-dependent DNA helicase RecQ [Escherichia coli Xuzhou21]
gi|388409130|gb|EIL69452.1| ATP-dependent DNA helicase RecQ [Escherichia coli 541-1]
gi|388421322|gb|EIL80939.1| ATP-dependent DNA helicase RecQ [Escherichia coli HM605]
gi|408457407|gb|EKJ81203.1| ATP-dependent DNA helicase RecQ [Escherichia coli AD30]
gi|412965200|emb|CCK49130.1| ATP-dependent DNA helicase [Escherichia coli chi7122]
gi|412971785|emb|CCJ46450.1| ATP-dependent DNA helicase [Escherichia coli]
gi|429355564|gb|EKY92252.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02030]
gi|429355754|gb|EKY92439.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02033-1]
gi|429357134|gb|EKY93808.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02092]
gi|429371198|gb|EKZ07757.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02093]
gi|429371402|gb|EKZ07959.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02281]
gi|429375432|gb|EKZ11967.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02318]
gi|429387228|gb|EKZ23670.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02913]
gi|429389790|gb|EKZ26209.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-03439]
gi|429390496|gb|EKZ26908.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-03943]
gi|429400930|gb|EKZ37241.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-04080]
gi|429401897|gb|EKZ38191.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429404472|gb|EKZ40747.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429412703|gb|EKZ48894.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429415644|gb|EKZ51805.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429422963|gb|EKZ59072.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429427510|gb|EKZ63592.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429431815|gb|EKZ67858.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429439320|gb|EKZ75307.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429443687|gb|EKZ79637.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429448312|gb|EKZ84227.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429454076|gb|EKZ89941.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429458539|gb|EKZ94363.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430873088|gb|ELB96667.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE4]
gi|430883034|gb|ELC06041.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE5]
gi|430890837|gb|ELC13397.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE10]
gi|430903003|gb|ELC24748.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE16]
gi|430903107|gb|ELC24851.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE15]
gi|430913882|gb|ELC35001.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE21]
gi|430932536|gb|ELC52957.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE39]
gi|430935905|gb|ELC56200.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE44]
gi|430949889|gb|ELC69284.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE187]
gi|430959658|gb|ELC77969.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE188]
gi|430962773|gb|ELC80625.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE189]
gi|430970881|gb|ELC87926.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE191]
gi|430977239|gb|ELC94090.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE193]
gi|430978984|gb|ELC95773.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE201]
gi|431003540|gb|ELD19023.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE210]
gi|431013410|gb|ELD27143.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE212]
gi|431030698|gb|ELD43704.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE214]
gi|431034609|gb|ELD46535.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE220]
gi|431037921|gb|ELD48891.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE224]
gi|431047355|gb|ELD57356.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE230]
gi|431059796|gb|ELD69143.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE233]
gi|431096876|gb|ELE02331.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE53]
gi|431104206|gb|ELE08809.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE55]
gi|431111518|gb|ELE15417.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE56]
gi|431117383|gb|ELE20622.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE58]
gi|431125535|gb|ELE27937.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE60]
gi|431127306|gb|ELE29608.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE62]
gi|431144281|gb|ELE45988.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE67]
gi|431146062|gb|ELE47661.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE72]
gi|431160135|gb|ELE60653.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE77]
gi|431175867|gb|ELE75854.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE81]
gi|431177503|gb|ELE77427.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE86]
gi|431186593|gb|ELE86133.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE87]
gi|431188169|gb|ELE87668.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE93]
gi|431196510|gb|ELE95436.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE111]
gi|431207204|gb|ELF05474.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE119]
gi|431209667|gb|ELF07738.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE142]
gi|431218899|gb|ELF16324.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE156]
gi|431234396|gb|ELF29797.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE161]
gi|431239716|gb|ELF34188.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE169]
gi|431239876|gb|ELF34342.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE171]
gi|431278992|gb|ELF69963.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE42]
gi|431289696|gb|ELF80437.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE43]
gi|431293209|gb|ELF83589.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE29]
gi|431299667|gb|ELF89238.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE22]
gi|431321465|gb|ELG09066.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE50]
gi|431323834|gb|ELG11300.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE59]
gi|431325714|gb|ELG13095.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE63]
gi|431335017|gb|ELG22161.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE65]
gi|431335488|gb|ELG22626.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE78]
gi|431347763|gb|ELG34641.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE79]
gi|431352550|gb|ELG39319.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE91]
gi|431373433|gb|ELG59039.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE118]
gi|431377686|gb|ELG62812.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE123]
gi|431392085|gb|ELG75688.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE141]
gi|431400822|gb|ELG84186.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE146]
gi|431417427|gb|ELG99890.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE154]
gi|431427140|gb|ELH09183.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE194]
gi|431459357|gb|ELH39670.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE184]
gi|431459691|gb|ELH39983.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE183]
gi|431466733|gb|ELH46750.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE196]
gi|431467349|gb|ELH47359.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE202]
gi|431477546|gb|ELH57314.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE197]
gi|431478399|gb|ELH58147.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE207]
gi|431485180|gb|ELH64844.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE209]
gi|431493841|gb|ELH73433.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE215]
gi|431501796|gb|ELH80772.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE218]
gi|431504472|gb|ELH83098.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE223]
gi|431520867|gb|ELH98186.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE229]
gi|431521765|gb|ELH99004.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE227]
gi|431526226|gb|ELI02985.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE104]
gi|431530167|gb|ELI06852.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE106]
gi|431545604|gb|ELI20252.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE112]
gi|431547922|gb|ELI22215.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE113]
gi|431551988|gb|ELI25951.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE117]
gi|431561551|gb|ELI34918.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE120]
gi|431565593|gb|ELI38672.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE124]
gi|431577598|gb|ELI50229.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE125]
gi|431597335|gb|ELI67242.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE133]
gi|431600495|gb|ELI70165.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE137]
gi|431615751|gb|ELI84873.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE145]
gi|431630352|gb|ELI98689.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE153]
gi|431639691|gb|ELJ07541.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE160]
gi|431642027|gb|ELJ09753.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE163]
gi|431653007|gb|ELJ20124.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE166]
gi|431655382|gb|ELJ22415.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE167]
gi|431657099|gb|ELJ24067.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE168]
gi|431666796|gb|ELJ33421.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE174]
gi|431669744|gb|ELJ36113.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE176]
gi|431683122|gb|ELJ48761.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE179]
gi|431683735|gb|ELJ49363.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE180]
gi|431687667|gb|ELJ53211.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE232]
gi|431701585|gb|ELJ66500.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE88]
gi|431712921|gb|ELJ77188.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE90]
gi|431716632|gb|ELJ80739.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE94]
gi|431727917|gb|ELJ91647.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE97]
gi|431731295|gb|ELJ94801.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE99]
gi|441608587|emb|CCP95671.1| ATP-dependent DNA helicase RecQ [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|441715872|emb|CCQ04315.1| ATP-dependent DNA helicase RecQ [Escherichia coli Nissle 1917]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|30064881|ref|NP_839052.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2a str. 2457T]
gi|56480445|ref|NP_709628.2| ATP-dependent DNA helicase RecQ [Shigella flexneri 2a str. 301]
gi|384545430|ref|YP_005729494.1| ATP-dependent DNA helicase [Shigella flexneri 2002017]
gi|30043141|gb|AAP18863.1| ATP-dependent DNA helicase [Shigella flexneri 2a str. 2457T]
gi|56383996|gb|AAN45335.2| ATP-dependent DNA helicase [Shigella flexneri 2a str. 301]
gi|281603217|gb|ADA76201.1| ATP-dependent DNA helicase [Shigella flexneri 2002017]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|417280748|ref|ZP_12068048.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3003]
gi|386245077|gb|EII86807.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3003]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|331685543|ref|ZP_08386127.1| ATP-dependent DNA helicase RecQ [Escherichia coli H299]
gi|331077244|gb|EGI48458.1| ATP-dependent DNA helicase RecQ [Escherichia coli H299]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|191166095|ref|ZP_03027930.1| ATP-dependent DNA helicase RecQ [Escherichia coli B7A]
gi|209921301|ref|YP_002295385.1| ATP-dependent DNA helicase RecQ [Escherichia coli SE11]
gi|300823362|ref|ZP_07103493.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 119-7]
gi|307313604|ref|ZP_07593224.1| ATP-dependent DNA helicase RecQ [Escherichia coli W]
gi|309796230|ref|ZP_07690640.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 145-7]
gi|331670669|ref|ZP_08371506.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA271]
gi|331679934|ref|ZP_08380597.1| ATP-dependent DNA helicase RecQ [Escherichia coli H591]
gi|378715260|ref|YP_005280153.1| ATP-dependent DNA helicase RecQ [Escherichia coli KO11FL]
gi|386611198|ref|YP_006126684.1| ATP-dependent DNA helicase [Escherichia coli W]
gi|386699326|ref|YP_006163163.1| ATP-dependent DNA helicase RecQ [Escherichia coli KO11FL]
gi|386711730|ref|YP_006175451.1| ATP-dependent DNA helicase RecQ [Escherichia coli W]
gi|416345829|ref|ZP_11679244.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4100B]
gi|417221737|ref|ZP_12025177.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.154]
gi|417241736|ref|ZP_12037493.1| ATP-dependent DNA helicase RecQ [Escherichia coli 9.0111]
gi|417269798|ref|ZP_12057158.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.3884]
gi|419947661|ref|ZP_14463980.1| ATP-dependent DNA helicase RecQ [Escherichia coli CUMT8]
gi|422778553|ref|ZP_16832201.1| ATP-dependent DNA helicase RecQ [Escherichia coli H120]
gi|423708132|ref|ZP_17682512.1| ATP-dependent DNA helicase recQ [Escherichia coli B799]
gi|432379058|ref|ZP_19622038.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE12]
gi|432762684|ref|ZP_19997145.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE48]
gi|432811570|ref|ZP_20045425.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE101]
gi|432829440|ref|ZP_20063054.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE135]
gi|432836825|ref|ZP_20070344.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE136]
gi|432965586|ref|ZP_20154507.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE203]
gi|433094218|ref|ZP_20280465.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE138]
gi|190903871|gb|EDV63585.1| ATP-dependent DNA helicase RecQ [Escherichia coli B7A]
gi|209914560|dbj|BAG79634.1| DNA helicase RecQ [Escherichia coli SE11]
gi|300524148|gb|EFK45217.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 119-7]
gi|306906585|gb|EFN37097.1| ATP-dependent DNA helicase RecQ [Escherichia coli W]
gi|308120112|gb|EFO57374.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 145-7]
gi|315063115|gb|ADT77442.1| ATP-dependent DNA helicase [Escherichia coli W]
gi|320198470|gb|EFW73071.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4100B]
gi|323380821|gb|ADX53089.1| ATP-dependent DNA helicase RecQ [Escherichia coli KO11FL]
gi|323943861|gb|EGB39955.1| ATP-dependent DNA helicase RecQ [Escherichia coli H120]
gi|331062142|gb|EGI34064.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA271]
gi|331072481|gb|EGI43813.1| ATP-dependent DNA helicase RecQ [Escherichia coli H591]
gi|383390853|gb|AFH15811.1| ATP-dependent DNA helicase RecQ [Escherichia coli KO11FL]
gi|383407422|gb|AFH13665.1| ATP-dependent DNA helicase RecQ [Escherichia coli W]
gi|385709045|gb|EIG46047.1| ATP-dependent DNA helicase recQ [Escherichia coli B799]
gi|386201539|gb|EII00530.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.154]
gi|386211853|gb|EII22304.1| ATP-dependent DNA helicase RecQ [Escherichia coli 9.0111]
gi|386228603|gb|EII55959.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.3884]
gi|388422564|gb|EIL82138.1| ATP-dependent DNA helicase RecQ [Escherichia coli CUMT8]
gi|430895567|gb|ELC17829.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE12]
gi|431315306|gb|ELG03229.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE48]
gi|431359645|gb|ELG46278.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE101]
gi|431381178|gb|ELG65810.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE136]
gi|431382069|gb|ELG66414.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE135]
gi|431476162|gb|ELH55956.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE203]
gi|431606692|gb|ELI76066.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE138]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|417664450|ref|ZP_12314029.1| ATP-dependent DNA helicase RecQ [Escherichia coli AA86]
gi|330908124|gb|EGH36643.1| ATP-dependent DNA helicase RecQ [Escherichia coli AA86]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|432682606|ref|ZP_19917956.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE143]
gi|431216878|gb|ELF14470.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE143]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|432604655|ref|ZP_19840881.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE66]
gi|431136589|gb|ELE38447.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE66]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|432566205|ref|ZP_19802760.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE51]
gi|431089461|gb|ELD95275.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE51]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|415831473|ref|ZP_11517190.1| ATP-dependent DNA helicase RecQ [Escherichia coli OK1357]
gi|417599262|ref|ZP_12249886.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3030-1]
gi|417669412|ref|ZP_12318948.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_O31]
gi|418943250|ref|ZP_13496459.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H43 str.
T22]
gi|419280425|ref|ZP_13822664.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10E]
gi|419347603|ref|ZP_13888969.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13A]
gi|419352064|ref|ZP_13893390.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13B]
gi|419357538|ref|ZP_13898783.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13C]
gi|419362509|ref|ZP_13903714.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13D]
gi|419367635|ref|ZP_13908783.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13E]
gi|419372449|ref|ZP_13913555.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14A]
gi|419377952|ref|ZP_13918966.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14B]
gi|419383345|ref|ZP_13924284.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14C]
gi|419388582|ref|ZP_13929446.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14D]
gi|425424847|ref|ZP_18805992.1| ATP-dependent DNA helicase RecQ [Escherichia coli 0.1288]
gi|323182595|gb|EFZ67999.1| ATP-dependent DNA helicase RecQ [Escherichia coli OK1357]
gi|345348758|gb|EGW81051.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3030-1]
gi|375321441|gb|EHS67277.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H43 str.
T22]
gi|378124120|gb|EHW85532.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10E]
gi|378182454|gb|EHX43106.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13A]
gi|378195639|gb|EHX56135.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13C]
gi|378195725|gb|EHX56220.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13B]
gi|378198136|gb|EHX58608.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13D]
gi|378209534|gb|EHX69904.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13E]
gi|378212157|gb|EHX72481.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14A]
gi|378214771|gb|EHX75074.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14B]
gi|378223929|gb|EHX84138.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14C]
gi|378227658|gb|EHX87827.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14D]
gi|397783043|gb|EJK93905.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_O31]
gi|408340410|gb|EKJ54905.1| ATP-dependent DNA helicase RecQ [Escherichia coli 0.1288]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|417626000|ref|ZP_12276288.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_H.1.8]
gi|345372046|gb|EGX04013.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_H.1.8]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|417142416|ref|ZP_11984991.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0259]
gi|417310399|ref|ZP_12097213.1| ATP-dependent DNA helicase recQ [Escherichia coli PCN033]
gi|338768042|gb|EGP22848.1| ATP-dependent DNA helicase recQ [Escherichia coli PCN033]
gi|386155440|gb|EIH11795.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0259]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|415799701|ref|ZP_11498958.1| ATP-dependent DNA helicase RecQ [Escherichia coli E128010]
gi|419319320|ref|ZP_13861114.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12A]
gi|419325342|ref|ZP_13867026.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12B]
gi|419331540|ref|ZP_13873131.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12C]
gi|419336784|ref|ZP_13878296.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12D]
gi|419342409|ref|ZP_13883861.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12E]
gi|420393960|ref|ZP_14893204.1| ATP-dependent DNA helicase RecQ [Escherichia coli EPEC C342-62]
gi|323161113|gb|EFZ47031.1| ATP-dependent DNA helicase RecQ [Escherichia coli E128010]
gi|378161445|gb|EHX22422.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12B]
gi|378164595|gb|EHX25537.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12A]
gi|378165464|gb|EHX26398.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12C]
gi|378179327|gb|EHX40057.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12D]
gi|378182541|gb|EHX43192.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12E]
gi|391310039|gb|EIQ67702.1| ATP-dependent DNA helicase RecQ [Escherichia coli EPEC C342-62]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|260870546|ref|YP_003236948.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H- str.
11128]
gi|415821875|ref|ZP_11510656.1| ATP-dependent DNA helicase RecQ [Escherichia coli OK1180]
gi|417594293|ref|ZP_12244979.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2534-86]
gi|419199610|ref|ZP_13742897.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8A]
gi|419206760|ref|ZP_13749897.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8B]
gi|419219119|ref|ZP_13762084.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8E]
gi|419892091|ref|ZP_14412124.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9570]
gi|419893745|ref|ZP_14413707.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9574]
gi|420088554|ref|ZP_14600425.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9602]
gi|420094057|ref|ZP_14605670.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9634]
gi|424768555|ref|ZP_18195825.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CFSAN001632]
gi|257766902|dbj|BAI38397.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H- str.
11128]
gi|323177836|gb|EFZ63420.1| ATP-dependent DNA helicase RecQ [Escherichia coli OK1180]
gi|345331400|gb|EGW63860.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2534-86]
gi|378039987|gb|EHW02463.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8B]
gi|378042931|gb|EHW05375.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8A]
gi|378074570|gb|EHW36605.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8E]
gi|388348402|gb|EIL14007.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9570]
gi|388366194|gb|EIL29940.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9574]
gi|394389845|gb|EJE66943.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9602]
gi|394397257|gb|EJE73536.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9634]
gi|421945970|gb|EKU03140.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CFSAN001632]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|215489150|ref|YP_002331581.1| ATP-dependent DNA helicase RecQ [Escherichia coli O127:H6 str.
E2348/69]
gi|312969449|ref|ZP_07783651.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2362-75]
gi|417758250|ref|ZP_12406310.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2B]
gi|418999282|ref|ZP_13546858.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC1A]
gi|419010310|ref|ZP_13557717.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC1C]
gi|419016012|ref|ZP_13563345.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC1D]
gi|419020937|ref|ZP_13568233.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC1E]
gi|419026389|ref|ZP_13573601.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2A]
gi|419031540|ref|ZP_13578679.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2C]
gi|419037099|ref|ZP_13584169.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2D]
gi|419042238|ref|ZP_13589252.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2E]
gi|215267222|emb|CAS11670.1| ATP-dependent DNA helicase [Escherichia coli O127:H6 str. E2348/69]
gi|312285996|gb|EFR13914.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2362-75]
gi|377838948|gb|EHU04052.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC1C]
gi|377839035|gb|EHU04137.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC1A]
gi|377852862|gb|EHU17774.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC1D]
gi|377855915|gb|EHU20778.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC1E]
gi|377858259|gb|EHU23102.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2A]
gi|377870225|gb|EHU34913.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2B]
gi|377872200|gb|EHU36849.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2C]
gi|377874232|gb|EHU38861.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2D]
gi|377886009|gb|EHU50498.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2E]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|417202238|ref|ZP_12018488.1| ATP-dependent DNA helicase RecQ [Escherichia coli 4.0522]
gi|417217784|ref|ZP_12023658.1| ATP-dependent DNA helicase RecQ [Escherichia coli JB1-95]
gi|386187125|gb|EIH75948.1| ATP-dependent DNA helicase RecQ [Escherichia coli 4.0522]
gi|386193223|gb|EIH87519.1| ATP-dependent DNA helicase RecQ [Escherichia coli JB1-95]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|386282516|ref|ZP_10060164.1| ATP-dependent DNA helicase recQ [Escherichia sp. 4_1_40B]
gi|386120366|gb|EIG68995.1| ATP-dependent DNA helicase recQ [Escherichia sp. 4_1_40B]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|170680861|ref|YP_001746140.1| ATP-dependent DNA helicase RecQ [Escherichia coli SMS-3-5]
gi|170518579|gb|ACB16757.1| ATP-dependent DNA helicase RecQ [Escherichia coli SMS-3-5]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|194429200|ref|ZP_03061728.1| ATP-dependent DNA helicase RecQ [Escherichia coli B171]
gi|300923326|ref|ZP_07139374.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 182-1]
gi|194412712|gb|EDX29006.1| ATP-dependent DNA helicase RecQ [Escherichia coli B171]
gi|300420412|gb|EFK03723.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 182-1]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|432804057|ref|ZP_20038006.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE84]
gi|431345148|gb|ELG32075.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE84]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|432399769|ref|ZP_19642542.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE25]
gi|432408892|ref|ZP_19651593.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE28]
gi|432725287|ref|ZP_19960200.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE17]
gi|432729896|ref|ZP_19964768.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE18]
gi|432743585|ref|ZP_19978298.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE23]
gi|432988316|ref|ZP_20176995.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE217]
gi|433113097|ref|ZP_20298944.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE150]
gi|430912931|gb|ELC34103.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE25]
gi|430925933|gb|ELC46529.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE28]
gi|431262506|gb|ELF54496.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE17]
gi|431270666|gb|ELF61828.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE18]
gi|431280876|gb|ELF71785.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE23]
gi|431502029|gb|ELH80922.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE217]
gi|431624586|gb|ELI93202.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE150]
Length = 604
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 439 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 490
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 491 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 537
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 538 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 595
>gi|401676992|ref|ZP_10808972.1| ATP-dependent DNA helicase RecQ [Enterobacter sp. SST3]
gi|400215746|gb|EJO46652.1| ATP-dependent DNA helicase RecQ [Enterobacter sp. SST3]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GKD S W ++ QLI G+ T+ I Q
Sbjct: 444 NQRIRDMGHDKLPVYGIGKDQSHEHWVSIIRQLIHLGFATQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP G++ E + V LK ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGDV----ELKLAVPRVVALKPRVMQKSYG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P + + + +++GV + G + IR
Sbjct: 543 RKAIADEENIPPYVVFNDATLIEMAEQMPLSASEMLSVNGVGTRKLERFGKEFMALIR 600
>gi|417604728|ref|ZP_12255290.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_94C]
gi|345347248|gb|EGW79562.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_94C]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|424818190|ref|ZP_18243341.1| ATP-dependent DNA helicase RecQ [Escherichia fergusonii ECD227]
gi|325499210|gb|EGC97069.1| ATP-dependent DNA helicase RecQ [Escherichia fergusonii ECD227]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|110644147|ref|YP_671877.1| ATP-dependent DNA helicase RecQ [Escherichia coli 536]
gi|419702662|ref|ZP_14230251.1| ATP-dependent DNA helicase RecQ [Escherichia coli SCI-07]
gi|110345739|gb|ABG71976.1| ATP-dependent DNA helicase RecQ [Escherichia coli 536]
gi|380346195|gb|EIA34494.1| ATP-dependent DNA helicase RecQ [Escherichia coli SCI-07]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|74314334|ref|YP_312753.1| ATP-dependent DNA helicase RecQ [Shigella sonnei Ss046]
gi|157163298|ref|YP_001460616.1| ATP-dependent DNA helicase RecQ [Escherichia coli HS]
gi|162135918|ref|YP_026263.3| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
MG1655]
gi|170083303|ref|YP_001732623.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. K-12 substr.
DH10B]
gi|187734194|ref|YP_001882520.1| ATP-dependent DNA helicase RecQ [Shigella boydii CDC 3083-94]
gi|188494940|ref|ZP_03002210.1| ATP-dependent DNA helicase RecQ [Escherichia coli 53638]
gi|218697543|ref|YP_002405210.1| ATP-dependent DNA helicase RecQ [Escherichia coli 55989]
gi|218701485|ref|YP_002409114.1| ATP-dependent DNA helicase RecQ [Escherichia coli IAI39]
gi|222158515|ref|YP_002558654.1| ATP-dependent DNA helicase recQ [Escherichia coli LF82]
gi|238902897|ref|YP_002928693.1| ATP-dependent DNA helicase RecQ [Escherichia coli BW2952]
gi|254795820|ref|YP_003080657.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
TW14359]
gi|260857772|ref|YP_003231663.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
11368]
gi|293468140|ref|ZP_06664552.1| ATP-dependent DNA helicase RecQ [Escherichia coli B088]
gi|383181074|ref|YP_005459079.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 53G]
gi|386601849|ref|YP_006103355.1| ATP-dependent DNA helicase RecQ [Escherichia coli IHE3034]
gi|386616632|ref|YP_006136298.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMNK88]
gi|386641456|ref|YP_006108254.1| ATP-dependent DNA helicase RecQ [Escherichia coli ABU 83972]
gi|387509272|ref|YP_006161528.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
RM12579]
gi|387609630|ref|YP_006098486.1| ATP-dependent DNA helicase [Escherichia coli 042]
gi|388479428|ref|YP_491620.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
W3110]
gi|407466829|ref|YP_006786729.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407484445|ref|YP_006781595.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2011C-3493]
gi|410484991|ref|YP_006772537.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2009EL-2050]
gi|414578705|ref|ZP_11435867.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 3233-85]
gi|415773800|ref|ZP_11486365.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3431]
gi|415786023|ref|ZP_11493337.1| ATP-dependent DNA helicase RecQ [Escherichia coli EPECa14]
gi|415811064|ref|ZP_11503414.1| ATP-dependent DNA helicase RecQ [Escherichia coli LT-68]
gi|415846355|ref|ZP_11525434.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 53G]
gi|417583446|ref|ZP_12234244.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_B2F1]
gi|417615484|ref|ZP_12265932.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_EH250]
gi|417620493|ref|ZP_12270894.1| ATP-dependent DNA helicase RecQ [Escherichia coli G58-1]
gi|417631303|ref|ZP_12281535.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_MHI813]
gi|417636778|ref|ZP_12286983.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_S1191]
gi|417641842|ref|ZP_12291966.1| ATP-dependent DNA helicase RecQ [Escherichia coli TX1999]
gi|417675001|ref|ZP_12324430.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 155-74]
gi|417709647|ref|ZP_12358664.1| ATP-dependent DNA helicase RecQ [Shigella flexneri VA-6]
gi|417807513|ref|ZP_12454440.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
LB226692]
gi|417829992|ref|ZP_12476531.1| ATP-dependent DNA helicase RecQ [Shigella flexneri J1713]
gi|417835254|ref|ZP_12481693.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
01-09591]
gi|417945670|ref|ZP_12588900.1| ATP-dependent DNA helicase RecQ [Escherichia coli XH140A]
gi|417977689|ref|ZP_12618470.1| ATP-dependent DNA helicase RecQ [Escherichia coli XH001]
gi|418269891|ref|ZP_12888068.1| ATP-dependent DNA helicase RecQ [Shigella sonnei str. Moseley]
gi|418305454|ref|ZP_12917248.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMNF18]
gi|419043191|ref|ZP_13590168.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3A]
gi|419053701|ref|ZP_13600566.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3B]
gi|419059737|ref|ZP_13606535.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3C]
gi|419065783|ref|ZP_13612482.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3D]
gi|419072168|ref|ZP_13617765.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3E]
gi|419077975|ref|ZP_13623471.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3F]
gi|419083146|ref|ZP_13628587.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4A]
gi|419089130|ref|ZP_13634478.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4B]
gi|419094916|ref|ZP_13640190.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4C]
gi|419100733|ref|ZP_13645918.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4D]
gi|419101663|ref|ZP_13646838.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4E]
gi|419112709|ref|ZP_13657750.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4F]
gi|419117387|ref|ZP_13662394.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5A]
gi|419123336|ref|ZP_13668272.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5B]
gi|419128635|ref|ZP_13673503.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5C]
gi|419134045|ref|ZP_13678868.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5D]
gi|419139187|ref|ZP_13683976.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5E]
gi|419144930|ref|ZP_13689656.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6A]
gi|419150857|ref|ZP_13695502.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6B]
gi|419156337|ref|ZP_13700890.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6C]
gi|419161695|ref|ZP_13706184.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6D]
gi|419166788|ref|ZP_13711235.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6E]
gi|419172782|ref|ZP_13716653.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7A]
gi|419177507|ref|ZP_13721313.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7B]
gi|419183343|ref|ZP_13726948.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7C]
gi|419188957|ref|ZP_13732459.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7D]
gi|419193893|ref|ZP_13737331.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7E]
gi|419212347|ref|ZP_13755409.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8C]
gi|419218190|ref|ZP_13761179.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8D]
gi|419229300|ref|ZP_13772135.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9A]
gi|419235104|ref|ZP_13777867.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9B]
gi|419240508|ref|ZP_13783209.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9C]
gi|419245923|ref|ZP_13788552.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9D]
gi|419251927|ref|ZP_13794490.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9E]
gi|419257379|ref|ZP_13799876.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10A]
gi|419263508|ref|ZP_13805912.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10B]
gi|419264798|ref|ZP_13807187.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10C]
gi|419270449|ref|ZP_13812783.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10D]
gi|419286604|ref|ZP_13828763.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10F]
gi|419292039|ref|ZP_13834121.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11A]
gi|419297319|ref|ZP_13839353.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11B]
gi|419308855|ref|ZP_13850743.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11D]
gi|419393861|ref|ZP_13934658.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15A]
gi|419399220|ref|ZP_13939979.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15B]
gi|419404466|ref|ZP_13945182.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15C]
gi|419409630|ref|ZP_13950311.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15D]
gi|419415188|ref|ZP_13955818.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15E]
gi|419812399|ref|ZP_14337266.1| ATP-dependent DNA helicase RecQ [Escherichia coli O32:H37 str. P4]
gi|419874689|ref|ZP_14396603.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9534]
gi|419879645|ref|ZP_14401076.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9545]
gi|419902626|ref|ZP_14421829.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM9942]
gi|419905653|ref|ZP_14424609.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10026]
gi|420099093|ref|ZP_14610339.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9455]
gi|420110650|ref|ZP_14620605.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9553]
gi|420113527|ref|ZP_14623259.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10021]
gi|420119768|ref|ZP_14629022.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10030]
gi|420126752|ref|ZP_14635465.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10224]
gi|420131499|ref|ZP_14639935.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM9952]
gi|420272370|ref|ZP_14774716.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA22]
gi|420277955|ref|ZP_14780233.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA40]
gi|420283156|ref|ZP_14785386.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW06591]
gi|420284102|ref|ZP_14786323.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10246]
gi|420289859|ref|ZP_14792029.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW11039]
gi|420300926|ref|ZP_14802968.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09109]
gi|420306852|ref|ZP_14808837.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10119]
gi|420312140|ref|ZP_14814065.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1738]
gi|420317897|ref|ZP_14819765.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1734]
gi|420322644|ref|ZP_14824463.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2850-71]
gi|420333543|ref|ZP_14835179.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-1770]
gi|420349685|ref|ZP_14851058.1| ATP-dependent DNA helicase RecQ [Shigella boydii 965-58]
gi|420361261|ref|ZP_14862203.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 3226-85]
gi|420365796|ref|ZP_14866655.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 4822-66]
gi|420382758|ref|ZP_14882188.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 225-75]
gi|421814877|ref|ZP_16250576.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0416]
gi|421820625|ref|ZP_16256107.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0821]
gi|421826602|ref|ZP_16261954.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK920]
gi|421833458|ref|ZP_16268735.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA7]
gi|423728051|ref|ZP_17701830.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA31]
gi|424080156|ref|ZP_17817094.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA505]
gi|424086551|ref|ZP_17823020.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA517]
gi|424092965|ref|ZP_17828872.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1996]
gi|424099656|ref|ZP_17834892.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1985]
gi|424105849|ref|ZP_17840562.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1990]
gi|424112488|ref|ZP_17846698.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93-001]
gi|424118422|ref|ZP_17852240.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA3]
gi|424124621|ref|ZP_17857901.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA5]
gi|424130785|ref|ZP_17863671.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA9]
gi|424137098|ref|ZP_17869517.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA10]
gi|424143655|ref|ZP_17875490.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA14]
gi|424150024|ref|ZP_17881383.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA15]
gi|424163751|ref|ZP_17886802.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA24]
gi|424257401|ref|ZP_17892343.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA25]
gi|424336089|ref|ZP_17898279.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA28]
gi|424452358|ref|ZP_17903983.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA32]
gi|424458522|ref|ZP_17909602.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA33]
gi|424465052|ref|ZP_17915355.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA39]
gi|424471287|ref|ZP_17921068.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA41]
gi|424477774|ref|ZP_17927073.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA42]
gi|424483558|ref|ZP_17932522.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW07945]
gi|424489753|ref|ZP_17938273.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09098]
gi|424496448|ref|ZP_17943963.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09195]
gi|424503074|ref|ZP_17949941.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4203]
gi|424509345|ref|ZP_17955696.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4196]
gi|424516755|ref|ZP_17961322.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW14313]
gi|424522879|ref|ZP_17966967.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW14301]
gi|424528750|ref|ZP_17972445.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4421]
gi|424534892|ref|ZP_17978224.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4422]
gi|424540980|ref|ZP_17983908.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4013]
gi|424547130|ref|ZP_17989443.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4402]
gi|424553325|ref|ZP_17995135.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4439]
gi|424559526|ref|ZP_18000903.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4436]
gi|424565847|ref|ZP_18006833.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4437]
gi|424571976|ref|ZP_18012493.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4448]
gi|424578134|ref|ZP_18018151.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1845]
gi|424583956|ref|ZP_18023586.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1863]
gi|424746311|ref|ZP_18174557.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424756582|ref|ZP_18184393.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CFSAN001630]
gi|425100630|ref|ZP_18503350.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.4870]
gi|425106704|ref|ZP_18509003.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.2239]
gi|425112706|ref|ZP_18514611.1| ATP-dependent DNA helicase RecQ [Escherichia coli 6.0172]
gi|425117443|ref|ZP_18519216.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0566]
gi|425122162|ref|ZP_18523834.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0569]
gi|425128636|ref|ZP_18529790.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0586]
gi|425134402|ref|ZP_18535238.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.2524]
gi|425140995|ref|ZP_18541361.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0833]
gi|425146671|ref|ZP_18546648.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0869]
gi|425152786|ref|ZP_18552384.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.0221]
gi|425158685|ref|ZP_18557932.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA34]
gi|425165005|ref|ZP_18563876.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA506]
gi|425170752|ref|ZP_18569210.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA507]
gi|425176796|ref|ZP_18574900.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA504]
gi|425182855|ref|ZP_18580536.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1999]
gi|425189156|ref|ZP_18586411.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1997]
gi|425195883|ref|ZP_18592638.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE1487]
gi|425202362|ref|ZP_18598555.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE037]
gi|425208739|ref|ZP_18604521.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK2001]
gi|425214496|ref|ZP_18609883.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA4]
gi|425220623|ref|ZP_18615570.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA23]
gi|425227269|ref|ZP_18621720.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA49]
gi|425233426|ref|ZP_18627450.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA45]
gi|425239348|ref|ZP_18633053.1| ATP-dependent DNA helicase RecQ [Escherichia coli TT12B]
gi|425245582|ref|ZP_18638874.1| ATP-dependent DNA helicase RecQ [Escherichia coli MA6]
gi|425251778|ref|ZP_18644706.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5905]
gi|425257577|ref|ZP_18650057.1| ATP-dependent DNA helicase RecQ [Escherichia coli CB7326]
gi|425263832|ref|ZP_18655808.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC96038]
gi|425269824|ref|ZP_18661435.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5412]
gi|425275115|ref|ZP_18666494.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW15901]
gi|425285691|ref|ZP_18676703.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW00353]
gi|425291039|ref|ZP_18681846.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3006]
gi|425297302|ref|ZP_18687410.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA38]
gi|425313995|ref|ZP_18703147.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1735]
gi|425319977|ref|ZP_18708738.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1736]
gi|425326116|ref|ZP_18714427.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1737]
gi|425332427|ref|ZP_18720224.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1846]
gi|425338604|ref|ZP_18725927.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1847]
gi|425344898|ref|ZP_18731771.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1848]
gi|425350737|ref|ZP_18737180.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1849]
gi|425357009|ref|ZP_18743055.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1850]
gi|425362958|ref|ZP_18748590.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1856]
gi|425369225|ref|ZP_18754286.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1862]
gi|425375530|ref|ZP_18760154.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1864]
gi|425382165|ref|ZP_18766145.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1865]
gi|425388417|ref|ZP_18771960.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1866]
gi|425395144|ref|ZP_18778235.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1868]
gi|425401199|ref|ZP_18783889.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1869]
gi|425407294|ref|ZP_18789499.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1870]
gi|425413652|ref|ZP_18795398.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE098]
gi|425419968|ref|ZP_18801223.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK523]
gi|425431264|ref|ZP_18811857.1| ATP-dependent DNA helicase RecQ [Escherichia coli 0.1304]
gi|428949672|ref|ZP_19021928.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.1467]
gi|428955744|ref|ZP_19027518.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.1042]
gi|428961768|ref|ZP_19033029.1| ATP-dependent DNA helicase RecQ [Escherichia coli 89.0511]
gi|428968370|ref|ZP_19039058.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.0091]
gi|428974146|ref|ZP_19044441.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.0039]
gi|428980535|ref|ZP_19050328.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.2281]
gi|428986311|ref|ZP_19055684.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0055]
gi|428992459|ref|ZP_19061431.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0056]
gi|428998356|ref|ZP_19066931.1| ATP-dependent DNA helicase RecQ [Escherichia coli 94.0618]
gi|429004744|ref|ZP_19072788.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0183]
gi|429010783|ref|ZP_19078163.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.1288]
gi|429017247|ref|ZP_19084107.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0943]
gi|429023086|ref|ZP_19089586.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0428]
gi|429029170|ref|ZP_19095125.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0427]
gi|429035310|ref|ZP_19100818.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0939]
gi|429041420|ref|ZP_19106492.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0932]
gi|429047246|ref|ZP_19111942.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0107]
gi|429052597|ref|ZP_19117153.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0003]
gi|429058154|ref|ZP_19122396.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.1742]
gi|429063674|ref|ZP_19127630.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0007]
gi|429069876|ref|ZP_19133298.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0672]
gi|429075653|ref|ZP_19138895.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0678]
gi|429080853|ref|ZP_19143978.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0713]
gi|429829081|ref|ZP_19360059.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0109]
gi|429835546|ref|ZP_19365772.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0010]
gi|443619893|ref|YP_007383749.1| ATP-dependent DNA helicase RecQ [Escherichia coli APEC O78]
gi|444927567|ref|ZP_21246820.1| ATP-dependent DNA helicase RecQ [Escherichia coli 09BKT078844]
gi|444933176|ref|ZP_21252172.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0814]
gi|444938639|ref|ZP_21257361.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0815]
gi|444944245|ref|ZP_21262719.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0816]
gi|444949646|ref|ZP_21267927.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0839]
gi|444955383|ref|ZP_21273438.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0848]
gi|444960749|ref|ZP_21278560.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1753]
gi|444965954|ref|ZP_21283505.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1775]
gi|444972010|ref|ZP_21289338.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1793]
gi|444977298|ref|ZP_21294364.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1805]
gi|444982637|ref|ZP_21299533.1| ATP-dependent DNA helicase RecQ [Escherichia coli ATCC 700728]
gi|444988047|ref|ZP_21304814.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA11]
gi|444993429|ref|ZP_21310059.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA19]
gi|444998607|ref|ZP_21315096.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA13]
gi|445004152|ref|ZP_21320531.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA2]
gi|445009571|ref|ZP_21325789.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA47]
gi|445014650|ref|ZP_21330744.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA48]
gi|445020572|ref|ZP_21336526.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA8]
gi|445025933|ref|ZP_21341746.1| ATP-dependent DNA helicase RecQ [Escherichia coli 7.1982]
gi|445031388|ref|ZP_21347043.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1781]
gi|445036812|ref|ZP_21352329.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1762]
gi|445042490|ref|ZP_21357851.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA35]
gi|445047694|ref|ZP_21362931.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.4880]
gi|445061301|ref|ZP_21373807.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0670]
gi|450226865|ref|ZP_21897539.1| ATP-dependent DNA helicase RecQ [Escherichia coli O08]
gi|450252923|ref|ZP_21902297.1| ATP-dependent DNA helicase RecQ [Escherichia coli S17]
gi|54041622|sp|P15043.5|RECQ_ECOLI RecName: Full=ATP-dependent DNA helicase RecQ
gi|48994977|gb|AAT48221.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
MG1655]
gi|73857811|gb|AAZ90518.1| ATP-dependent DNA helicase [Shigella sonnei Ss046]
gi|85676229|dbj|BAE77479.1| ATP-dependent DNA helicase [Escherichia coli str. K12 substr.
W3110]
gi|157068978|gb|ABV08233.1| ATP-dependent DNA helicase RecQ [Escherichia coli HS]
gi|169891138|gb|ACB04845.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
DH10B]
gi|187431186|gb|ACD10460.1| ATP-dependent DNA helicase RecQ [Shigella boydii CDC 3083-94]
gi|188490139|gb|EDU65242.1| ATP-dependent DNA helicase RecQ [Escherichia coli 53638]
gi|218354275|emb|CAV00962.1| ATP-dependent DNA helicase [Escherichia coli 55989]
gi|218371471|emb|CAR19306.1| ATP-dependent DNA helicase [Escherichia coli IAI39]
gi|222035520|emb|CAP78265.1| ATP-dependent DNA helicase recQ [Escherichia coli LF82]
gi|238860042|gb|ACR62040.1| ATP-dependent DNA helicase [Escherichia coli BW2952]
gi|254595220|gb|ACT74581.1| ATP-dependent DNA helicase [Escherichia coli O157:H7 str. TW14359]
gi|257756421|dbj|BAI27923.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
11368]
gi|284923930|emb|CBG37029.1| ATP-dependent DNA helicase [Escherichia coli 042]
gi|291321518|gb|EFE60956.1| ATP-dependent DNA helicase RecQ [Escherichia coli B088]
gi|294490610|gb|ADE89366.1| ATP-dependent DNA helicase RecQ [Escherichia coli IHE3034]
gi|307555948|gb|ADN48723.1| ATP-dependent DNA helicase RecQ [Escherichia coli ABU 83972]
gi|315618731|gb|EFU99316.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3431]
gi|323155231|gb|EFZ41415.1| ATP-dependent DNA helicase RecQ [Escherichia coli EPECa14]
gi|323167577|gb|EFZ53283.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 53G]
gi|323173439|gb|EFZ59068.1| ATP-dependent DNA helicase RecQ [Escherichia coli LT-68]
gi|332084978|gb|EGI90160.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 155-74]
gi|332345801|gb|AEE59135.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMNK88]
gi|332996969|gb|EGK16587.1| ATP-dependent DNA helicase RecQ [Shigella flexneri VA-6]
gi|335573445|gb|EGM59800.1| ATP-dependent DNA helicase RecQ [Shigella flexneri J1713]
gi|339417552|gb|AEJ59224.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMNF18]
gi|340731834|gb|EGR60973.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
01-09591]
gi|340737771|gb|EGR72025.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
LB226692]
gi|342362570|gb|EGU26687.1| ATP-dependent DNA helicase RecQ [Escherichia coli XH140A]
gi|344192682|gb|EGV46771.1| ATP-dependent DNA helicase RecQ [Escherichia coli XH001]
gi|345333780|gb|EGW66227.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_B2F1]
gi|345357660|gb|EGW89852.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_EH250]
gi|345369561|gb|EGX01544.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_MHI813]
gi|345369710|gb|EGX01692.1| ATP-dependent DNA helicase RecQ [Escherichia coli G58-1]
gi|345384846|gb|EGX14704.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_S1191]
gi|345389797|gb|EGX19598.1| ATP-dependent DNA helicase RecQ [Escherichia coli TX1999]
gi|359333954|dbj|BAL40401.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
MDS42]
gi|374361266|gb|AEZ42973.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
RM12579]
gi|377889383|gb|EHU53847.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3B]
gi|377900947|gb|EHU65271.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3A]
gi|377901914|gb|EHU66224.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3C]
gi|377903769|gb|EHU68059.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3D]
gi|377906294|gb|EHU70540.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3E]
gi|377916995|gb|EHU81064.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3F]
gi|377923006|gb|EHU86977.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4A]
gi|377926673|gb|EHU90603.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4B]
gi|377937309|gb|EHV01090.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4D]
gi|377937816|gb|EHV01589.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4C]
gi|377952265|gb|EHV15861.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4F]
gi|377957081|gb|EHV20618.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4E]
gi|377957368|gb|EHV20903.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5A]
gi|377960982|gb|EHV24457.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5B]
gi|377969378|gb|EHV32756.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5C]
gi|377970401|gb|EHV33763.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5D]
gi|377980238|gb|EHV43504.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5E]
gi|377988783|gb|EHV51958.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6B]
gi|377989115|gb|EHV52284.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6A]
gi|377992641|gb|EHV55787.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6C]
gi|378003621|gb|EHV66662.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6D]
gi|378006269|gb|EHV69255.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6E]
gi|378010076|gb|EHV73023.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7A]
gi|378020960|gb|EHV83688.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7C]
gi|378023963|gb|EHV86628.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7D]
gi|378028415|gb|EHV91033.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7B]
gi|378035128|gb|EHV97690.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7E]
gi|378048184|gb|EHW10539.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8C]
gi|378057740|gb|EHW19963.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8D]
gi|378068432|gb|EHW30533.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9A]
gi|378073450|gb|EHW35501.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9B]
gi|378078658|gb|EHW40639.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9C]
gi|378086522|gb|EHW48397.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9D]
gi|378088985|gb|EHW50834.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9E]
gi|378096895|gb|EHW58661.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10A]
gi|378102153|gb|EHW63835.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10B]
gi|378119748|gb|EHW81237.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10C]
gi|378121916|gb|EHW83364.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10D]
gi|378124653|gb|EHW86058.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11A]
gi|378125192|gb|EHW86594.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10F]
gi|378138180|gb|EHW99439.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11B]
gi|378144053|gb|EHX05229.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11D]
gi|378233768|gb|EHX93852.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15A]
gi|378239942|gb|EHX99919.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15B]
gi|378242825|gb|EHY02776.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15C]
gi|378250902|gb|EHY10804.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15D]
gi|378255628|gb|EHY15485.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15E]
gi|385154769|gb|EIF16778.1| ATP-dependent DNA helicase RecQ [Escherichia coli O32:H37 str. P4]
gi|388350582|gb|EIL15941.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9534]
gi|388370946|gb|EIL34439.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9545]
gi|388373611|gb|EIL36859.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM9942]
gi|388380812|gb|EIL43394.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10026]
gi|390637133|gb|EIN16689.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1996]
gi|390637513|gb|EIN17059.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA505]
gi|390638307|gb|EIN17820.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA517]
gi|390655763|gb|EIN33679.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1985]
gi|390656665|gb|EIN34525.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93-001]
gi|390659431|gb|EIN37196.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1990]
gi|390673956|gb|EIN50168.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA3]
gi|390677280|gb|EIN53339.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA5]
gi|390680714|gb|EIN56541.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA9]
gi|390691815|gb|EIN66538.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA10]
gi|390696174|gb|EIN70668.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA14]
gi|390697410|gb|EIN71830.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA15]
gi|390711245|gb|EIN84228.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA22]
gi|390717538|gb|EIN90322.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA24]
gi|390718182|gb|EIN90940.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA25]
gi|390724300|gb|EIN96860.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA28]
gi|390736865|gb|EIO08185.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA31]
gi|390737487|gb|EIO08782.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA32]
gi|390741100|gb|EIO12195.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA33]
gi|390755766|gb|EIO25297.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA40]
gi|390758421|gb|EIO27875.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA39]
gi|390761852|gb|EIO31126.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA41]
gi|390764847|gb|EIO34042.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA42]
gi|390779055|gb|EIO46792.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW06591]
gi|390786025|gb|EIO53561.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW07945]
gi|390796590|gb|EIO63861.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10246]
gi|390799973|gb|EIO67092.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09098]
gi|390803163|gb|EIO70187.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW11039]
gi|390804554|gb|EIO71520.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09109]
gi|390813588|gb|EIO80198.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10119]
gi|390821916|gb|EIO88072.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09195]
gi|390822385|gb|EIO88509.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4203]
gi|390827531|gb|EIO93291.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4196]
gi|390840654|gb|EIP04669.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW14313]
gi|390842695|gb|EIP06532.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW14301]
gi|390847735|gb|EIP11259.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4421]
gi|390858215|gb|EIP20623.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4422]
gi|390862503|gb|EIP24686.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4013]
gi|390866548|gb|EIP28505.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4402]
gi|390874830|gb|EIP35918.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4439]
gi|390880191|gb|EIP40894.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4436]
gi|390890079|gb|EIP49765.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4437]
gi|390891420|gb|EIP51051.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4448]
gi|390897852|gb|EIP57152.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1738]
gi|390905830|gb|EIP64755.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1734]
gi|390915489|gb|EIP74001.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1845]
gi|390915828|gb|EIP74328.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1863]
gi|391244920|gb|EIQ04196.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2850-71]
gi|391245159|gb|EIQ04433.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-1770]
gi|391265596|gb|EIQ24564.1| ATP-dependent DNA helicase RecQ [Shigella boydii 965-58]
gi|391277456|gb|EIQ36200.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 3226-85]
gi|391280624|gb|EIQ39291.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 3233-85]
gi|391291630|gb|EIQ50010.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 4822-66]
gi|391297979|gb|EIQ56004.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 225-75]
gi|394391248|gb|EJE68134.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10224]
gi|394402810|gb|EJE78500.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9553]
gi|394411617|gb|EJE85840.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10021]
gi|394423765|gb|EJE96980.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9455]
gi|394430839|gb|EJF03117.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10030]
gi|394431778|gb|EJF03941.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM9952]
gi|397894923|gb|EJL11359.1| ATP-dependent DNA helicase RecQ [Shigella sonnei str. Moseley]
gi|406780153|gb|AFS59577.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407056742|gb|AFS76793.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2011C-3493]
gi|407062864|gb|AFS83911.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408061419|gb|EKG95938.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA7]
gi|408063920|gb|EKG98407.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK920]
gi|408065096|gb|EKG99572.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA34]
gi|408075235|gb|EKH09473.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA506]
gi|408080230|gb|EKH14314.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA507]
gi|408088415|gb|EKH21787.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA504]
gi|408094586|gb|EKH27603.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1999]
gi|408100770|gb|EKH33252.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1997]
gi|408105693|gb|EKH37840.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE1487]
gi|408112433|gb|EKH44083.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE037]
gi|408118686|gb|EKH49805.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK2001]
gi|408125003|gb|EKH55643.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA4]
gi|408134793|gb|EKH64609.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA23]
gi|408136802|gb|EKH66532.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA49]
gi|408143753|gb|EKH73027.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA45]
gi|408152134|gb|EKH80583.1| ATP-dependent DNA helicase RecQ [Escherichia coli TT12B]
gi|408157176|gb|EKH85342.1| ATP-dependent DNA helicase RecQ [Escherichia coli MA6]
gi|408161220|gb|EKH89191.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5905]
gi|408170320|gb|EKH97532.1| ATP-dependent DNA helicase RecQ [Escherichia coli CB7326]
gi|408177268|gb|EKI04083.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC96038]
gi|408180273|gb|EKI06898.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5412]
gi|408189631|gb|EKI15342.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW15901]
gi|408197818|gb|EKI23069.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW00353]
gi|408208793|gb|EKI33413.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3006]
gi|408210666|gb|EKI35226.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA38]
gi|408223507|gb|EKI47276.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1735]
gi|408234880|gb|EKI57873.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1736]
gi|408237737|gb|EKI60587.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1737]
gi|408242911|gb|EKI65462.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1846]
gi|408251792|gb|EKI73509.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1847]
gi|408256146|gb|EKI77539.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1848]
gi|408262801|gb|EKI83715.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1849]
gi|408271059|gb|EKI91208.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1850]
gi|408274185|gb|EKI94210.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1856]
gi|408282088|gb|EKJ01436.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1862]
gi|408288474|gb|EKJ07297.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1864]
gi|408293101|gb|EKJ11565.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1865]
gi|408303336|gb|EKJ20798.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1868]
gi|408304519|gb|EKJ21944.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1866]
gi|408315855|gb|EKJ32154.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1869]
gi|408321307|gb|EKJ37346.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1870]
gi|408323034|gb|EKJ39003.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE098]
gi|408334009|gb|EKJ48917.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK523]
gi|408341948|gb|EKJ56384.1| ATP-dependent DNA helicase RecQ [Escherichia coli 0.1304]
gi|408544804|gb|EKK22250.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.2239]
gi|408545335|gb|EKK22771.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.4870]
gi|408545856|gb|EKK23279.1| ATP-dependent DNA helicase RecQ [Escherichia coli 6.0172]
gi|408563231|gb|EKK39371.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0566]
gi|408563445|gb|EKK39578.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0586]
gi|408564373|gb|EKK40483.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0569]
gi|408575663|gb|EKK51316.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0833]
gi|408578574|gb|EKK54091.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.2524]
gi|408588317|gb|EKK62900.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0869]
gi|408593310|gb|EKK67634.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.0221]
gi|408599002|gb|EKK72934.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0416]
gi|408608686|gb|EKK82072.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0821]
gi|421948409|gb|EKU05429.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421949627|gb|EKU06557.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CFSAN001630]
gi|427201317|gb|EKV71710.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.1042]
gi|427201385|gb|EKV71774.1| ATP-dependent DNA helicase RecQ [Escherichia coli 89.0511]
gi|427204734|gb|EKV75006.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.1467]
gi|427217586|gb|EKV86644.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.0091]
gi|427221262|gb|EKV90123.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.2281]
gi|427224265|gb|EKV92982.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.0039]
gi|427237737|gb|EKW05261.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0056]
gi|427238116|gb|EKW05636.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0055]
gi|427242488|gb|EKW09895.1| ATP-dependent DNA helicase RecQ [Escherichia coli 94.0618]
gi|427255805|gb|EKW22046.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0183]
gi|427257425|gb|EKW23551.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0943]
gi|427257996|gb|EKW24110.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.1288]
gi|427273047|gb|EKW37747.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0428]
gi|427274751|gb|EKW39394.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0427]
gi|427280527|gb|EKW44885.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0939]
gi|427289002|gb|EKW52599.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0932]
gi|427295793|gb|EKW58875.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0107]
gi|427297634|gb|EKW60664.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0003]
gi|427307738|gb|EKW70166.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.1742]
gi|427310706|gb|EKW72942.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0007]
gi|427315500|gb|EKW77496.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0672]
gi|427324990|gb|EKW86445.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0678]
gi|427326402|gb|EKW87820.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0713]
gi|429250725|gb|EKY35374.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0109]
gi|429251161|gb|EKY35784.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0010]
gi|443424401|gb|AGC89305.1| ATP-dependent DNA helicase RecQ [Escherichia coli APEC O78]
gi|444534888|gb|ELV15066.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0814]
gi|444536334|gb|ELV16361.1| ATP-dependent DNA helicase RecQ [Escherichia coli 09BKT078844]
gi|444545204|gb|ELV24138.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0815]
gi|444554349|gb|ELV31919.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0816]
gi|444554556|gb|ELV32113.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0839]
gi|444559217|gb|ELV36456.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0848]
gi|444568882|gb|ELV45531.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1753]
gi|444572276|gb|ELV48715.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1775]
gi|444575846|gb|ELV52071.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1793]
gi|444587827|gb|ELV63229.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1805]
gi|444589282|gb|ELV64624.1| ATP-dependent DNA helicase RecQ [Escherichia coli ATCC 700728]
gi|444589460|gb|ELV64795.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA11]
gi|444603190|gb|ELV77901.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA19]
gi|444603275|gb|ELV77985.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA13]
gi|444612464|gb|ELV86757.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA2]
gi|444618782|gb|ELV92849.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA47]
gi|444620257|gb|ELV94266.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA48]
gi|444626765|gb|ELW00555.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA8]
gi|444635256|gb|ELW08688.1| ATP-dependent DNA helicase RecQ [Escherichia coli 7.1982]
gi|444637104|gb|ELW10480.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1781]
gi|444642183|gb|ELW15387.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1762]
gi|444651734|gb|ELW24530.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA35]
gi|444657008|gb|ELW29510.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.4880]
gi|444666687|gb|ELW38747.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0670]
gi|449313574|gb|EMD03779.1| ATP-dependent DNA helicase RecQ [Escherichia coli O08]
gi|449314202|gb|EMD04376.1| ATP-dependent DNA helicase RecQ [Escherichia coli S17]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|445053267|ref|ZP_21368273.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0083]
gi|444659629|gb|ELW32037.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0083]
Length = 603
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 438 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 489
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 490 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 536
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 537 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 594
>gi|422831064|ref|ZP_16879214.1| ATP-dependent DNA helicase recQ [Escherichia coli B093]
gi|371602955|gb|EHN91637.1| ATP-dependent DNA helicase recQ [Escherichia coli B093]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|422977416|ref|ZP_16977368.1| ATP-dependent DNA helicase recQ [Escherichia coli TA124]
gi|371593264|gb|EHN82147.1| ATP-dependent DNA helicase recQ [Escherichia coli TA124]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|415838403|ref|ZP_11520381.1| ATP-dependent DNA helicase RecQ [Escherichia coli RN587/1]
gi|425280271|ref|ZP_18671483.1| ATP-dependent DNA helicase RecQ [Escherichia coli ARS4.2123]
gi|425302722|ref|ZP_18692600.1| ATP-dependent DNA helicase RecQ [Escherichia coli 07798]
gi|323189754|gb|EFZ75033.1| ATP-dependent DNA helicase RecQ [Escherichia coli RN587/1]
gi|408197343|gb|EKI22606.1| ATP-dependent DNA helicase RecQ [Escherichia coli ARS4.2123]
gi|408210381|gb|EKI34946.1| ATP-dependent DNA helicase RecQ [Escherichia coli 07798]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|331649648|ref|ZP_08350730.1| ATP-dependent DNA helicase RecQ [Escherichia coli M605]
gi|331041518|gb|EGI13666.1| ATP-dependent DNA helicase RecQ [Escherichia coli M605]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|293413264|ref|ZP_06655926.1| ATP-dependent DNA helicase RecQ [Escherichia coli B354]
gi|291468212|gb|EFF10709.1| ATP-dependent DNA helicase RecQ [Escherichia coli B354]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|218550953|ref|YP_002384744.1| ATP-dependent DNA helicase RecQ [Escherichia fergusonii ATCC 35469]
gi|416900390|ref|ZP_11929665.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_7v]
gi|417117601|ref|ZP_11968462.1| ATP-dependent DNA helicase RecQ [Escherichia coli 1.2741]
gi|422803414|ref|ZP_16851902.1| ATP-dependent DNA helicase RecQ [Escherichia coli M863]
gi|422808185|ref|ZP_16856611.1| ATP-dependent DNA helicase RecQ [Escherichia fergusonii B253]
gi|450195654|ref|ZP_21892608.1| ATP-dependent DNA helicase RecQ [Escherichia coli SEPT362]
gi|218358494|emb|CAQ91141.1| ATP-dependent DNA helicase [Escherichia fergusonii ATCC 35469]
gi|323964066|gb|EGB59556.1| ATP-dependent DNA helicase RecQ [Escherichia coli M863]
gi|324111045|gb|EGC05032.1| ATP-dependent DNA helicase RecQ [Escherichia fergusonii B253]
gi|327250673|gb|EGE62379.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_7v]
gi|386140145|gb|EIG81300.1| ATP-dependent DNA helicase RecQ [Escherichia coli 1.2741]
gi|449316195|gb|EMD06316.1| ATP-dependent DNA helicase RecQ [Escherichia coli SEPT362]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|194438627|ref|ZP_03070715.1| ATP-dependent DNA helicase RecQ [Escherichia coli 101-1]
gi|253775552|ref|YP_003038383.1| ATP-dependent DNA helicase RecQ [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254163767|ref|YP_003046875.1| ATP-dependent DNA helicase RecQ [Escherichia coli B str. REL606]
gi|254290517|ref|YP_003056265.1| ATP-dependent DNA helicase [Escherichia coli BL21(DE3)]
gi|300930009|ref|ZP_07145442.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 187-1]
gi|422789266|ref|ZP_16841997.1| ATP-dependent DNA helicase RecQ [Escherichia coli H489]
gi|422794104|ref|ZP_16846795.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA007]
gi|442596884|ref|ZP_21014685.1| ATP-dependent DNA helicase RecQ [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|194422431|gb|EDX38430.1| ATP-dependent DNA helicase RecQ [Escherichia coli 101-1]
gi|253326596|gb|ACT31198.1| ATP-dependent DNA helicase, RecQ family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975668|gb|ACT41339.1| ATP-dependent DNA helicase [Escherichia coli B str. REL606]
gi|253979824|gb|ACT45494.1| ATP-dependent DNA helicase [Escherichia coli BL21(DE3)]
gi|300462099|gb|EFK25592.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 187-1]
gi|323959079|gb|EGB54748.1| ATP-dependent DNA helicase RecQ [Escherichia coli H489]
gi|323969335|gb|EGB64634.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA007]
gi|441654632|emb|CCQ00598.1| ATP-dependent DNA helicase RecQ [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|432871713|ref|ZP_20091743.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE147]
gi|431407675|gb|ELG90884.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE147]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|293417289|ref|ZP_06659914.1| ATP-dependent DNA helicase RecQ [Escherichia coli B185]
gi|291431057|gb|EFF04052.1| ATP-dependent DNA helicase RecQ [Escherichia coli B185]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|251787081|ref|YP_003001385.1| ATP-dependent DNA helicase [Escherichia coli BL21(DE3)]
gi|242379354|emb|CAQ34167.1| ATP-dependent DNA helicase [Escherichia coli BL21(DE3)]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|110807486|ref|YP_691006.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 5 str. 8401]
gi|415859116|ref|ZP_11533441.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2a str. 2457T]
gi|417704375|ref|ZP_12353472.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-218]
gi|417725388|ref|ZP_12374173.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-304]
gi|417730594|ref|ZP_12379278.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-671]
gi|417735693|ref|ZP_12384331.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2747-71]
gi|417740471|ref|ZP_12389038.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 4343-70]
gi|417745522|ref|ZP_12394040.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2930-71]
gi|420344000|ref|ZP_14845461.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-404]
gi|424839868|ref|ZP_18264505.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 5a str. M90T]
gi|110617034|gb|ABF05701.1| ATP-dependent DNA helicase [Shigella flexneri 5 str. 8401]
gi|313647133|gb|EFS11588.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2a str. 2457T]
gi|332750946|gb|EGJ81351.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 4343-70]
gi|332751036|gb|EGJ81440.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-671]
gi|332752274|gb|EGJ82665.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2747-71]
gi|332764332|gb|EGJ94567.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2930-71]
gi|332998187|gb|EGK17790.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-218]
gi|333013511|gb|EGK32880.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-304]
gi|383468920|gb|EID63941.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 5a str. M90T]
gi|391262699|gb|EIQ21714.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-404]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|416333516|ref|ZP_11670743.1| ATP-dependent DNA helicase RecQ [Escherichia coli WV_060327]
gi|320197630|gb|EFW72242.1| ATP-dependent DNA helicase RecQ [Escherichia coli WV_060327]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|170022156|ref|YP_001727110.1| ATP-dependent DNA helicase RecQ [Escherichia coli ATCC 8739]
gi|169757084|gb|ACA79783.1| ATP-dependent DNA helicase, RecQ family [Escherichia coli ATCC
8739]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|432716451|ref|ZP_19951464.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE9]
gi|431269860|gb|ELF61161.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE9]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|418259306|ref|ZP_12882257.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 6603-63]
gi|397894450|gb|EJL10892.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 6603-63]
Length = 609
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|294792887|ref|ZP_06758034.1| ATP-dependent DNA helicase RecQ [Veillonella sp. 6_1_27]
gi|294456786|gb|EFG25149.1| ATP-dependent DNA helicase RecQ [Veillonella sp. 6_1_27]
Length = 622
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 16/175 (9%)
Query: 3 KVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62
+++ A D L + GL + K L Q ++ GYL + Y +S++ ++ L
Sbjct: 459 RIMRAGHDALPVFGLLSNVDEKSIKGLIQQFVASGYLRSSTGK-YPVLSLTAGAEEVLAG 517
Query: 63 ARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERK 122
+ E+ + +H ++ S KS+ ++ E S L+ L + RK
Sbjct: 518 RK-------------EVEEIRQHVSVPSRTS--KSAVSVVREKSSSTSGGLFEHLRQHRK 562
Query: 123 KLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+LA G PY + D + +A RP+T N+ GV + + +G LQ I
Sbjct: 563 RLAEKAGLRPYLIFPDTVLIDLANLRPTTLGEFGNVKGVGEAKLKKYGLTFLQAI 617
>gi|191174273|ref|ZP_03035782.1| ATP-dependent DNA helicase RecQ [Escherichia coli F11]
gi|300979425|ref|ZP_07174554.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 200-1]
gi|331660168|ref|ZP_08361104.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA206]
gi|386621651|ref|YP_006141231.1| ATP-dependent DNA helicase [Escherichia coli NA114]
gi|387831714|ref|YP_003351651.1| DNA helicase RecQ [Escherichia coli SE15]
gi|417285103|ref|ZP_12072394.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW07793]
gi|419912569|ref|ZP_14431019.1| ATP-dependent DNA helicase RecQ [Escherichia coli KD1]
gi|422371441|ref|ZP_16451821.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 16-3]
gi|422373962|ref|ZP_16454257.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 60-1]
gi|432424226|ref|ZP_19666762.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE178]
gi|432468160|ref|ZP_19710236.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE205]
gi|432473175|ref|ZP_19715210.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE206]
gi|432502379|ref|ZP_19744127.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE216]
gi|432561089|ref|ZP_19797741.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE49]
gi|432585350|ref|ZP_19821740.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE57]
gi|432696687|ref|ZP_19931877.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE162]
gi|432708217|ref|ZP_19943291.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE6]
gi|432715681|ref|ZP_19950704.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE8]
gi|432734575|ref|ZP_19969396.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE45]
gi|432761660|ref|ZP_19996147.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE46]
gi|432891418|ref|ZP_20104136.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE165]
gi|432901413|ref|ZP_20111499.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE192]
gi|432923092|ref|ZP_20125798.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE173]
gi|432929782|ref|ZP_20130734.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE175]
gi|432983329|ref|ZP_20172095.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE211]
gi|433030772|ref|ZP_20218615.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE109]
gi|433075106|ref|ZP_20261740.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE129]
gi|433080034|ref|ZP_20266548.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE131]
gi|433098652|ref|ZP_20284816.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE139]
gi|433108083|ref|ZP_20294040.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE148]
gi|433122440|ref|ZP_20308093.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE157]
gi|433185565|ref|ZP_20369797.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE85]
gi|190905456|gb|EDV65086.1| ATP-dependent DNA helicase RecQ [Escherichia coli F11]
gi|281180871|dbj|BAI57201.1| DNA helicase RecQ [Escherichia coli SE15]
gi|300308016|gb|EFJ62536.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 200-1]
gi|315296805|gb|EFU56097.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 16-3]
gi|324014666|gb|EGB83885.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 60-1]
gi|331052736|gb|EGI24771.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA206]
gi|333972152|gb|AEG38957.1| ATP-dependent DNA helicase [Escherichia coli NA114]
gi|386250344|gb|EII96511.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW07793]
gi|388391428|gb|EIL52895.1| ATP-dependent DNA helicase RecQ [Escherichia coli KD1]
gi|430941449|gb|ELC61596.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE178]
gi|430990518|gb|ELD06948.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE205]
gi|430995341|gb|ELD11638.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE206]
gi|431025701|gb|ELD38799.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE216]
gi|431088285|gb|ELD94181.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE49]
gi|431114336|gb|ELE17880.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE57]
gi|431230687|gb|ELF26462.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE162]
gi|431251083|gb|ELF45101.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE8]
gi|431254661|gb|ELF47929.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE6]
gi|431270562|gb|ELF61725.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE45]
gi|431305336|gb|ELF93665.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE46]
gi|431422057|gb|ELH04252.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE192]
gi|431429823|gb|ELH11658.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE165]
gi|431434505|gb|ELH16154.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE173]
gi|431439929|gb|ELH21260.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE175]
gi|431487979|gb|ELH67620.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE211]
gi|431539939|gb|ELI15573.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE109]
gi|431582631|gb|ELI54644.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE129]
gi|431592999|gb|ELI63564.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE131]
gi|431611967|gb|ELI81226.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE139]
gi|431623503|gb|ELI92172.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE148]
gi|431638407|gb|ELJ06442.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE157]
gi|431701482|gb|ELJ66398.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE85]
Length = 611
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|417714622|ref|ZP_12363574.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-272]
gi|417719543|ref|ZP_12368424.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-227]
gi|332998230|gb|EGK17832.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-272]
gi|333013771|gb|EGK33134.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-227]
Length = 609
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|420388179|ref|ZP_14887510.1| ATP-dependent DNA helicase RecQ [Escherichia coli EPECa12]
gi|391301576|gb|EIQ59462.1| ATP-dependent DNA helicase RecQ [Escherichia coli EPECa12]
Length = 417
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 252 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 303
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 304 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 350
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 351 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 408
>gi|419004630|ref|ZP_13552137.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC1B]
gi|377841746|gb|EHU06807.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC1B]
Length = 432
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 267 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 318
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 319 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 365
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 366 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 423
>gi|420376556|ref|ZP_14876296.1| HRDC domain protein [Shigella flexneri 1235-66]
gi|391302860|gb|EIQ60707.1| HRDC domain protein [Shigella flexneri 1235-66]
Length = 239
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 74 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 125
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 126 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 172
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 173 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 230
>gi|326800755|ref|YP_004318574.1| ATP-dependent DNA helicase RecQ [Sphingobacterium sp. 21]
gi|326551519|gb|ADZ79904.1| ATP-dependent DNA helicase RecQ [Sphingobacterium sp. 21]
Length = 729
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 18/166 (10%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
G GK+ +WK+L Q + YL + I D Y + +++ G Y+ + + L
Sbjct: 456 FFGTGKEQGVIYWKSLLRQAVLNNYLYKDI-DNYGLLKLTKTGADYIENP---YSVKFYL 511
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
E D E ET + + G L D QL ML + RKK+A+ G P+
Sbjct: 512 NNPMEKADEEGDETPAQSGGAL--------------DTQLLQMLKDLRKKIAKSKGLPPF 557
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
+ D +++++ P T L I GV G + I++
Sbjct: 558 VIFQDPSLEEMCTHYPITLDELKQIHGVGAGKAAKFGSQFVSLIKN 603
>gi|238789392|ref|ZP_04633178.1| ATP-dependent DNA helicase recQ [Yersinia frederiksenii ATCC 33641]
gi|238722535|gb|EEQ14189.1| ATP-dependent DNA helicase recQ [Yersinia frederiksenii ATCC 33641]
Length = 610
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 85/178 (47%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+G++ S W ++ QLI G L++ I ++ + +++
Sbjct: 444 NQRIREFGHDKLSVYGIGREQSHEHWVSVLRQLIHLGLLSQNIA-MFSALQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP + L L + + + ++SSA ++ G D +L+ L +
Sbjct: 497 -AARPVLRAELPLQLAVPRIQSLK----------VRSSANQKSYG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P T + L +++GV Q + G + IR
Sbjct: 545 RKSIADEGNIPPYVVFNDATLLEMAEQLPITASELLSVNGVGQRKLERFGAPFMAMIR 602
>gi|425307629|ref|ZP_18697292.1| ATP-dependent DNA helicase RecQ [Escherichia coli N1]
gi|408224965|gb|EKI48662.1| ATP-dependent DNA helicase RecQ [Escherichia coli N1]
Length = 609
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVLPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|345301389|ref|YP_004830747.1| ATP-dependent DNA helicase RecQ [Enterobacter asburiae LF7a]
gi|345095326|gb|AEN66962.1| ATP-dependent DNA helicase RecQ [Enterobacter asburiae LF7a]
Length = 630
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GKD S W ++ QLI G+ T+ I Q
Sbjct: 465 NQRIRDMGHDKLPVYGIGKDQSHEHWVSIIRQLIHLGFATQNI--------AQHSALQLT 516
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP G++ E + V LK ++ G D +L+ L +
Sbjct: 517 EAARP--------VLRGDV----ELKLAVPRVIALKPRVMQKSYG-GNYDRKLFAKLRKL 563
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P + + + +++GV + G + IR
Sbjct: 564 RKAIADEENIPPYVVFNDATLIEMAEQMPLSASEMLSVNGVGTRKLERFGKEFMALIR 621
>gi|415909075|ref|ZP_11553081.1| ATP-dependent DNA helicase, partial [Herbaspirillum frisingense
GSF30]
gi|407762664|gb|EKF71471.1| ATP-dependent DNA helicase, partial [Herbaspirillum frisingense
GSF30]
Length = 584
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 26/181 (14%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
++V + D+L + G+G D W+ + Q+I+ G LT ++ Y + +++
Sbjct: 420 ERVKQWRHDQLSVFGVGSDRGEAEWRAILRQVIALGLLTVDAEN-YSALKLTE------- 471
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQ-----LYHM 116
+ARP ++ E+ + K+ + + GF E D+ L+
Sbjct: 472 AARP-------------VLRGEQQVQLRRYRKPEKAKRSSQRSGFVETDLNTEEQALFEK 518
Query: 117 LLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQT 176
L R + AR Y + D T+++IA ARP + L ++ GV + + T+GD ++
Sbjct: 519 LRWWRVETARAHNVPAYVIFHDATMREIAKARPQSLDDLRHVTGVGEKKLETYGDQIIAL 578
Query: 177 I 177
I
Sbjct: 579 I 579
>gi|406591085|ref|ZP_11065394.1| ATP-dependent DNA helicase RecQ, partial [Enterococcus sp. GMD1E]
gi|404468308|gb|EKA13306.1| ATP-dependent DNA helicase RecQ, partial [Enterococcus sp. GMD1E]
Length = 423
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDH 67
F L +GL K+ S L LIS GYL TI Y + V+++G Q L G
Sbjct: 274 FGHLSTYGLMKNQSQKETMQLIEYLISNGYLL-TINGEYPVLKVTERGIQVLKGQESVYR 332
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ P K L +E E D L+ +L E R LA
Sbjct: 333 KEP-------------------------KKVQQLSDE---ETDT-LFEVLRELRTDLASE 363
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 364 AGVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKN 415
>gi|425046684|ref|ZP_18450680.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 510]
gi|403023495|gb|EJY35745.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 510]
Length = 598
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDH 67
F L +GL K+ S L LIS GYL TI Y + V+++G Q L G
Sbjct: 449 FGHLSTYGLMKNQSQKETMQLIEYLISNGYLL-TINGEYPVLKVTERGIQVLKGQESVYR 507
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ P K L +E E D L+ +L E R LA
Sbjct: 508 KEP-------------------------KKVQQLSDE---ETDT-LFEVLRELRTDLASE 538
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 539 AGVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKN 590
>gi|293552867|ref|ZP_06673525.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1039]
gi|291603001|gb|EFF33195.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1039]
Length = 607
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDH 67
F L +GL K+ S L LIS GYL TI Y + V+++G Q L G
Sbjct: 458 FGHLSTYGLMKNQSQKETMQLIEYLISNGYLL-TINGEYPVLKVTERGIQVLKGQESVYR 516
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ P K L +E E D L+ +L E R LA
Sbjct: 517 KEP-------------------------KKVQQLSDE---ETDT-LFEVLRELRTDLASE 547
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 548 AGVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKN 599
>gi|293569394|ref|ZP_06680691.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1071]
gi|294615876|ref|ZP_06695718.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1636]
gi|294623492|ref|ZP_06702340.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium U0317]
gi|406583118|ref|ZP_11058210.1| ATP-dependent DNA helicase RecQ [Enterococcus sp. GMD3E]
gi|406585470|ref|ZP_11060459.1| ATP-dependent DNA helicase RecQ [Enterococcus sp. GMD2E]
gi|410936379|ref|ZP_11368245.1| ATP-dependent helicase RecQ [Enterococcus sp. GMD5E]
gi|447912995|ref|YP_007394407.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium NRRL B-2354]
gi|291587920|gb|EFF19771.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1071]
gi|291591262|gb|EFF22929.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1636]
gi|291597086|gb|EFF28289.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium U0317]
gi|404457169|gb|EKA03741.1| ATP-dependent DNA helicase RecQ [Enterococcus sp. GMD3E]
gi|404462658|gb|EKA08377.1| ATP-dependent DNA helicase RecQ [Enterococcus sp. GMD2E]
gi|410735169|gb|EKQ77084.1| ATP-dependent helicase RecQ [Enterococcus sp. GMD5E]
gi|445188704|gb|AGE30346.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium NRRL B-2354]
Length = 607
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDH 67
F L +GL K+ S L LIS GYL TI Y + V+++G Q L G
Sbjct: 458 FGHLSTYGLMKNQSQKETMQLIEYLISNGYLL-TINGEYPVLKVTERGIQVLKGQESVYR 516
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ P K L +E E D L+ +L E R LA
Sbjct: 517 KEP-------------------------KKVQQLSDE---ETDT-LFEVLRELRTDLASE 547
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 548 AGVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKN 599
>gi|425056708|ref|ZP_18460149.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 504]
gi|403041644|gb|EJY52649.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 504]
Length = 598
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDH 67
F L +GL K+ S L LIS GYL TI Y + V+++G Q L G
Sbjct: 449 FGHLSTYGLMKNQSQKETMQLIEYLISNGYLL-TINGEYPVLKVTERGIQVLKGQESVYR 507
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ P K L +E E D L+ +L E R LA
Sbjct: 508 KEP-------------------------KKVQQLSDE---ETDT-LFEVLRELRTDLASE 538
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 539 AGVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKN 590
>gi|314938768|ref|ZP_07846042.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133a04]
gi|314941132|ref|ZP_07848029.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133C]
gi|314947917|ref|ZP_07851322.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0082]
gi|314953028|ref|ZP_07855988.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133A]
gi|314993343|ref|ZP_07858713.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133B]
gi|314997596|ref|ZP_07862527.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133a01]
gi|389868415|ref|YP_006375838.1| ATP-dependent helicase RecQ [Enterococcus faecium DO]
gi|424792878|ref|ZP_18219062.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium V689]
gi|424811332|ref|ZP_18236609.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium S447]
gi|424847818|ref|ZP_18272365.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R501]
gi|424858850|ref|ZP_18282865.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R499]
gi|424913288|ref|ZP_18336659.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R497]
gi|424952314|ref|ZP_18367342.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R496]
gi|424952691|ref|ZP_18367697.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R494]
gi|424957441|ref|ZP_18372167.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R446]
gi|424959682|ref|ZP_18374250.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1986]
gi|424965033|ref|ZP_18379062.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1190]
gi|424968888|ref|ZP_18382484.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1140]
gi|424972551|ref|ZP_18385884.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1139]
gi|424974356|ref|ZP_18387592.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1137]
gi|424978717|ref|ZP_18391616.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1123]
gi|424982459|ref|ZP_18395123.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV99]
gi|424985073|ref|ZP_18397576.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV69]
gi|424987539|ref|ZP_18399911.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV38]
gi|424992222|ref|ZP_18404303.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV26]
gi|424995892|ref|ZP_18407738.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV168]
gi|424999782|ref|ZP_18411380.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV165]
gi|425002581|ref|ZP_18414003.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV161]
gi|425006107|ref|ZP_18417301.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV102]
gi|425007735|ref|ZP_18418852.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV1]
gi|425012800|ref|ZP_18423575.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E422]
gi|425015836|ref|ZP_18426425.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E417]
gi|425018897|ref|ZP_18429293.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium C621]
gi|425020834|ref|ZP_18431122.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium C497]
gi|425026970|ref|ZP_18435011.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium C1904]
gi|425033540|ref|ZP_18438502.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 515]
gi|425037211|ref|ZP_18441895.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 514]
gi|425040332|ref|ZP_18444811.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 513]
gi|425043917|ref|ZP_18448114.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 511]
gi|425049286|ref|ZP_18453147.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 509]
gi|425052147|ref|ZP_18455773.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 506]
gi|425061949|ref|ZP_18465142.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 503]
gi|313588313|gb|EFR67158.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133a01]
gi|313592170|gb|EFR71015.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133B]
gi|313594903|gb|EFR73748.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133A]
gi|313599992|gb|EFR78835.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133C]
gi|313641906|gb|EFS06486.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133a04]
gi|313645686|gb|EFS10266.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0082]
gi|388533664|gb|AFK58856.1| ATP-dependent helicase RecQ [Enterococcus faecium DO]
gi|402916920|gb|EJX37748.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium V689]
gi|402917408|gb|EJX38198.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium S447]
gi|402918743|gb|EJX39406.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R501]
gi|402926766|gb|EJX46785.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R499]
gi|402927305|gb|EJX47279.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R496]
gi|402927455|gb|EJX47419.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R497]
gi|402940784|gb|EJX59577.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R494]
gi|402943563|gb|EJX62043.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R446]
gi|402945188|gb|EJX63556.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1190]
gi|402949712|gb|EJX67752.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1986]
gi|402950439|gb|EJX68443.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1140]
gi|402953962|gb|EJX71626.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1139]
gi|402956551|gb|EJX73998.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1137]
gi|402960789|gb|EJX77887.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1123]
gi|402961006|gb|EJX78084.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV99]
gi|402966996|gb|EJX83591.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV69]
gi|402974144|gb|EJX90211.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV26]
gi|402974207|gb|EJX90272.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV38]
gi|402975471|gb|EJX91426.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV168]
gi|402977646|gb|EJX93444.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV165]
gi|402983086|gb|EJX98513.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV161]
gi|402984269|gb|EJX99588.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV102]
gi|402991361|gb|EJY06155.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E422]
gi|402993844|gb|EJY08425.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E417]
gi|402994405|gb|EJY08940.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV1]
gi|403000095|gb|EJY14244.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium C621]
gi|403005310|gb|EJY19031.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium C1904]
gi|403008323|gb|EJY21841.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium C497]
gi|403009543|gb|EJY22979.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 515]
gi|403011931|gb|EJY25208.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 514]
gi|403013214|gb|EJY26340.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 513]
gi|403017479|gb|EJY30221.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 511]
gi|403028450|gb|EJY40273.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 509]
gi|403035389|gb|EJY46781.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 506]
gi|403040149|gb|EJY51249.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 503]
Length = 598
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDH 67
F L +GL K+ S L LIS GYL TI Y + V+++G Q L G
Sbjct: 449 FGHLSTYGLMKNQSQKETMQLIEYLISNGYLL-TINGEYPVLKVTERGIQVLKGQESVYR 507
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ P K L +E E D L+ +L E R LA
Sbjct: 508 KEP-------------------------KKVQQLSDE---ETDT-LFEVLRELRTDLASE 538
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 539 AGVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKN 590
>gi|385786868|ref|YP_005817977.1| ATP-dependent DNA helicase RecQ [Erwinia sp. Ejp617]
gi|310766140|gb|ADP11090.1| ATP-dependent DNA helicase RecQ [Erwinia sp. Ejp617]
Length = 610
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D Q DKL ++G+G+D S W ++ QLI G +T+ I +Y + +++ + L
Sbjct: 444 NQRIRDMQHDKLPVYGIGRDLSHEHWTSVLRQLIHLGLVTQNIA-MYSALQLTEAARPVL 502
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R D LLL + +K+ ++ + D +L+ L +
Sbjct: 503 ---RGD--VSLLLAV--------------PRLASVKTRSSSQKSFGGNYDRKLFAKLRKL 543
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P T + + +++GV + G L I+
Sbjct: 544 RKAIADEDNLPPYVVFNDATLIEMAEQMPITASEMLSVNGVGHKKLERFGKPFLLMIK 601
>gi|374290851|ref|YP_005037886.1| ATP-dependent DNA helicase [Azospirillum lipoferum 4B]
gi|357422790|emb|CBS85631.1| ATP-dependent DNA helicase [Azospirillum lipoferum 4B]
Length = 642
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 9/186 (4%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KVV Q D+L G+G D + W+++ QL++ G LT ++ Y ++ G +
Sbjct: 457 TEKVVQQQHDRLKTFGVGTDLTKVEWQSVYRQLVATGLLTVDLEG-YGGFRLTDAGVSVI 515
Query: 61 GSAR--PDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENE-----GFSEADMQL 113
R + P+L G + DA T SS + S AD L
Sbjct: 516 KGQRVVKLRKDPVLERRRG-VHDALRRHTARGGSAGGGSSGEGVSRSGARGALSAADDAL 574
Query: 114 YHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHL 173
+H L + R LA+ PY + D T+ ++ RP A++ GV + + D
Sbjct: 575 WHALKDCRTALAKAQSVPPYVIFHDSTLLEMVAQRPRDHTAFAHLPGVGGRKLERYADAF 634
Query: 174 LQTIRH 179
L+ IR
Sbjct: 635 LEVIRQ 640
>gi|431195385|ref|ZP_19500363.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1620]
gi|430571763|gb|ELB10637.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1620]
Length = 590
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDH 67
F L +GL K+ S L LIS GYL TI Y + V+++G Q L G
Sbjct: 441 FGHLSTYGLMKNQSQKETMQLIEYLISNGYLL-TINGEYPVLKVTERGIQVLKGQESVYR 499
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ P K L +E E D L+ +L E R LA
Sbjct: 500 KEP-------------------------KKVQQLSDE---ETDT-LFEVLRELRTDLASE 530
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 531 AGVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKN 582
>gi|257884765|ref|ZP_05664418.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,231,501]
gi|257820603|gb|EEV47751.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,231,501]
Length = 590
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDH 67
F L +GL K+ S L LIS GYL TI Y + V+++G Q L G
Sbjct: 441 FGHLSTYGLMKNQSQKETMQLIEYLISNGYLL-TINGEYPVLKVTERGIQVLKGQESVYR 499
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ P K L +E E D L+ +L E R LA
Sbjct: 500 KEP-------------------------KKVQQLSDE---ETDT-LFEVLRELRTDLASE 530
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 531 AGVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKN 582
>gi|357031586|ref|ZP_09093529.1| ATP-dependent DNA helicase RecQ [Gluconobacter morbifer G707]
gi|356414816|gb|EHH68460.1| ATP-dependent DNA helicase RecQ [Gluconobacter morbifer G707]
Length = 617
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 18/170 (10%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQ 68
+ L + G+GKD S NWW+ + QLI+ G ++ G+ + + +
Sbjct: 457 YQHLSVFGIGKDQSENWWRGVIRQLIARG-------------AIRMHGEYGSLALQSEIA 503
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVT 128
P+L + + +++ V S EN+ S + + L R AR
Sbjct: 504 RPILRGAERISLRMDVRRPLAAAV-----SGNPENDSLSPDERMTFDALRSWRLSEAREQ 558
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
PY + D ++ IA P+T++ LA I GV + +G +LQ ++
Sbjct: 559 EIPPYVIFHDSVLRDIAREYPTTQSELACIRGVGSSKLDRYGASVLQVLK 608
>gi|365833970|ref|ZP_09375421.1| ATP-dependent DNA helicase RecQ [Hafnia alvei ATCC 51873]
gi|364570619|gb|EHM48223.1| ATP-dependent DNA helicase RecQ [Hafnia alvei ATCC 51873]
Length = 612
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 17/169 (10%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL ++GLG+DH++ W ++ QLI G +T+ I Q SARP
Sbjct: 453 DKLKVYGLGRDHTTEHWVSVLRQLIHLGLVTQNI--------AMHSALQLTESARP---- 500
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
GE+ + + SS +N G D +L+ L + RK +A
Sbjct: 501 ----VLRGEVPLQLAVPRVINLKSRSSSSHASKNYG-GNYDRKLFAKLRKLRKAIADEEN 555
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
PY + D T+ ++A P + L +I+GV Q + G + IR
Sbjct: 556 IPPYVVFNDATLLEMAEQMPIRASELLSINGVGQRKLDRFGAPFMTLIR 604
>gi|331269759|ref|YP_004396251.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum BKT015925]
gi|329126309|gb|AEB76254.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum BKT015925]
Length = 813
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 33/190 (17%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV++ F+ L +GL K +S + K L+S+GY+ +
Sbjct: 438 NKKVLNLGFNTLSTYGLMKAYSQDKLKNFINTLVSHGYIG------------------LI 479
Query: 61 GSARPDHQPPLLLTFNGEMVDA-EEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
G P +L N V + ET+ V + K T N +L+++L
Sbjct: 480 GGTYP------VLNLNNRSVKVLKGEETVKFKVFEAKHKDTHIN--------KLFNILKS 525
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
R +LA G PY + GD T+++++L P K ++ + G+ + +G+ + I
Sbjct: 526 LRYELASDEGVPPYVIFGDGTLREMSLKYPINKEKMLQVSGIGEVKYEKYGEKFMGVISK 585
Query: 180 LSQKLNLSLD 189
++ N++++
Sbjct: 586 YVKENNINVN 595
>gi|163760382|ref|ZP_02167464.1| ATP-dependent DNA helicase protein [Hoeflea phototrophica DFL-43]
gi|162282333|gb|EDQ32622.1| ATP-dependent DNA helicase protein [Hoeflea phototrophica DFL-43]
Length = 625
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 13/165 (7%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G G D + W+++ QL++ G L + + + + + R +
Sbjct: 470 VFGAGNDLPAKTWQSVYRQLLAAG-LVSVDHEAFGALKLEPDARAVFKRERE-------V 521
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
F + + S + G ++ A+LE AD++L+ L R +A+ PY
Sbjct: 522 LFRKDRPTKGKAARSSGSAGAARAKASLEG-----ADLELFEALRATRTTIAKALSVPPY 576
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
+ D T+ A RP + L +I GV Q + +GD L IR
Sbjct: 577 VIFPDTTLVAFATIRPLDEEALLDISGVGQSKLERYGDDFLTVIR 621
>gi|317494839|ref|ZP_07953250.1| ATP-dependent DNA helicase RecQ [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316917164|gb|EFV38512.1| ATP-dependent DNA helicase RecQ [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 612
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 17/169 (10%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
DKL ++GLG+DH++ W ++ QLI G +T+ I Q SARP
Sbjct: 453 DKLKVYGLGRDHTTEHWVSVLRQLIHLGLVTQNI--------AMHSALQLTESARP---- 500
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
GE+ + + SS +N G D +L+ L + RK +A
Sbjct: 501 ----VLRGEVPLQLAVPRVINLKSRSSSSHASKNYG-GNYDRKLFAKLRKLRKAIADEEN 555
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
PY + D T+ ++A P + L +I+GV Q + G + IR
Sbjct: 556 IPPYVVFNDATLLEMAEQMPIRASELLSINGVGQRKLDRFGAPFMTLIR 604
>gi|238798601|ref|ZP_04642077.1| ATP-dependent DNA helicase recQ [Yersinia mollaretii ATCC 43969]
gi|238717557|gb|EEQ09397.1| ATP-dependent DNA helicase recQ [Yersinia mollaretii ATCC 43969]
Length = 610
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++GLG++ S W ++ QLI G L++ I Q
Sbjct: 444 NQRIREFGHDKLSVYGLGREQSHEHWVSVLRQLIHLGLLSQNIAQF--------SALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP + L L + + + ++SSA ++ G D +L+ L +
Sbjct: 496 EAARPVLRAELPLQLAVPRIQSLK----------VRSSANQKSYG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P T + L ++ GV Q + G + IR
Sbjct: 545 RKSIADEGNIPPYVVFNDTTLLEMAEQMPITASELLSVTGVGQRKLERFGAPFMAMIR 602
>gi|432545657|ref|ZP_19782479.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE236]
gi|432551136|ref|ZP_19787884.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE237]
gi|432624192|ref|ZP_19860204.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE76]
gi|432817612|ref|ZP_20051362.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE115]
gi|431070550|gb|ELD78853.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE236]
gi|431075989|gb|ELD83505.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE237]
gi|431155723|gb|ELE56469.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE76]
gi|431360028|gb|ELG46649.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE115]
Length = 611
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++G+ + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGIGMRKLERFGKPFMALIR 602
>gi|392981231|ref|YP_006479819.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392327164|gb|AFM62117.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 609
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GKD S W ++ QLI G+ T+ I Q
Sbjct: 444 NQRIRDMGHDKLPVYGIGKDQSHEHWVSIIRQLIHLGFATQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP G++ E + V LK ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGDV----ELKLAVPRVVALKPRVMQKSYG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P + + + +++GV + G + IR
Sbjct: 543 RKAIADEENIPPYVVFNDATLIEMAEQMPLSASEMLSVNGVGTRKLERFGKAFMALIR 600
>gi|417692248|ref|ZP_12341449.1| ATP-dependent DNA helicase RecQ [Shigella boydii 5216-82]
gi|332084419|gb|EGI89615.1| ATP-dependent DNA helicase RecQ [Shigella boydii 5216-82]
Length = 609
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVVLKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|292486686|ref|YP_003529556.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora CFBP1430]
gi|292897923|ref|YP_003537292.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
gi|428783612|ref|ZP_19001107.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora ACW56400]
gi|291197771|emb|CBJ44866.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
gi|291552103|emb|CBA19140.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora CFBP1430]
gi|312170752|emb|CBX79014.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora ATCC BAA-2158]
gi|426277898|gb|EKV55621.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora ACW56400]
Length = 610
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D Q DKL ++G+G+D + W ++ QLI G +T+ I +Y + +++
Sbjct: 444 NQRIRDMQHDKLPVYGIGRDQNHEHWTSVLRQLIHLGLVTQNIA-MYSALQLTE------ 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE+ + S +K+ + + D +L+ L +
Sbjct: 497 -AARP--------VLRGEVSLLLAVPRLVS----VKTRGSSQKSFGGNYDRKLFAKLRKL 543
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P T + + +++GV + G L I+
Sbjct: 544 RKAIADEDNLPPYVVFNDATLIEMAEQMPITASEMLSVNGVGHKKLERFGKPFLLMIK 601
>gi|160890574|ref|ZP_02071577.1| hypothetical protein BACUNI_03017 [Bacteroides uniformis ATCC 8492]
gi|317479884|ref|ZP_07939001.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_1_36]
gi|423304003|ref|ZP_17282002.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T00C23]
gi|423307273|ref|ZP_17285263.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T12C37]
gi|156859573|gb|EDO53004.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis ATCC 8492]
gi|316903958|gb|EFV25795.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_1_36]
gi|392685931|gb|EIY79239.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T00C23]
gi|392690525|gb|EIY83788.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T12C37]
Length = 727
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 12 LLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPL 71
L + G G W + Q + GYL++ +++ Y + V+ GK++L H
Sbjct: 454 LEVFGSGMGEEDKTWNAVIRQALIAGYLSKDVEN-YGLLKVTDDGKKFL-----KHPKSF 507
Query: 72 LLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTA 131
+ + + D EE A G D LY ML + RKKL++
Sbjct: 508 KIVEDNDFEDVEEE-------------APARGGGACAVDPALYSMLKDLRKKLSKKLEVP 554
Query: 132 PYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
PY + D +++ +A P T L NI GV +G+ + I+
Sbjct: 555 PYVIFQDPSLEAMATIYPVTLDELQNIPGVGAGKAKRYGEEFCKLIKR 602
>gi|430822141|ref|ZP_19440721.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0120]
gi|430864639|ref|ZP_19480464.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1574]
gi|431743578|ref|ZP_19532454.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2071]
gi|430443642|gb|ELA53618.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0120]
gi|430553420|gb|ELA93106.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1574]
gi|430606367|gb|ELB43718.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2071]
Length = 590
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDH 67
F L +GL K+ S L LIS GYL TI Y + V+++G Q L G
Sbjct: 441 FGHLSTYGLMKNQSQKETMQLIEYLISNGYLL-TINGEYPVLKVTERGIQVLKGQESVYR 499
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ P K L +E E D L+ +L E R LA
Sbjct: 500 KEP-------------------------KKVQQLSDE---ETDT-LFEVLRELRTDLASE 530
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 531 AGVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKN 582
>gi|354721299|ref|ZP_09035514.1| ATP-dependent DNA helicase RecQ [Enterobacter mori LMG 25706]
Length = 609
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GK+ S W ++ QLI G+ T+ I Q
Sbjct: 444 NQRIRDMGHDKLPVYGIGKEQSHEHWVSIIRQLIHLGFATQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE+ E + V LK ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGEV----ELKLAVPRVIALKPRVMQKSYG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P + + + +++GV + G + IR
Sbjct: 543 RKAIADEENIPPYVVFNDATLIEMAEQMPLSASEMLSVNGVGTRKLERFGKEFMALIR 600
>gi|430833421|ref|ZP_19451434.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0679]
gi|430838792|ref|ZP_19456736.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0688]
gi|430858468|ref|ZP_19476096.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1552]
gi|431432486|ref|ZP_19512953.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1630]
gi|431758988|ref|ZP_19547606.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E3346]
gi|430486876|gb|ELA63712.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0679]
gi|430491403|gb|ELA67872.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0688]
gi|430545677|gb|ELA85650.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1552]
gi|430587546|gb|ELB25768.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1630]
gi|430626761|gb|ELB63321.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E3346]
Length = 590
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDH 67
F L +GL K+ S L LIS GYL TI Y + V+++G Q L G
Sbjct: 441 FGHLSTYGLMKNQSQKETMQLIEYLISNGYLL-TINGEYPVLKVTERGIQVLKGQESVYR 499
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ P K L +E E D L+ +L E R LA
Sbjct: 500 KEP-------------------------KKVQQLSDE---ETDT-LFEVLRELRTDLASE 530
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 531 AGVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKN 582
>gi|422381292|ref|ZP_16461460.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 57-2]
gi|324007518|gb|EGB76737.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 57-2]
Length = 611
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMVLIR 602
>gi|294617447|ref|ZP_06697080.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1679]
gi|291596301|gb|EFF27561.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1679]
Length = 607
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDH 67
F L +GL K+ S L LIS GYL TI Y + V+++G Q L G
Sbjct: 458 FGHLSTYGLMKNQSQKETMQLIEYLISNGYLL-TINGEYPVLKVTERGIQVLKGQESVYR 516
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ P K L +E E D L+ +L E R LA
Sbjct: 517 KEP-------------------------KKVQQLSDE---ETDT-LFEVLRELRTDLASE 547
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 548 AGVPPYVVFSDSTLKEMSRIRPSSRLEILQIKGVGQSKLDKYGEAFLSRIKN 599
>gi|218692098|ref|YP_002400310.1| ATP-dependent DNA helicase RecQ [Escherichia coli ED1a]
gi|218429662|emb|CAR10626.2| ATP-dependent DNA helicase [Escherichia coli ED1a]
Length = 609
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVVLKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|69247249|ref|ZP_00604267.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Enterococcus faecium DO]
gi|257878112|ref|ZP_05657765.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,230,933]
gi|257881102|ref|ZP_05660755.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,231,502]
gi|257889689|ref|ZP_05669342.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,231,410]
gi|257892374|ref|ZP_05672027.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,231,408]
gi|260559161|ref|ZP_05831347.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium C68]
gi|261207696|ref|ZP_05922381.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TC 6]
gi|289566272|ref|ZP_06446703.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium D344SRF]
gi|383328406|ref|YP_005354290.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium Aus0004]
gi|406580883|ref|ZP_11056070.1| ATP-dependent DNA helicase RecQ [Enterococcus sp. GMD4E]
gi|415895156|ref|ZP_11550549.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E4453]
gi|416140204|ref|ZP_11599271.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E4452]
gi|427395064|ref|ZP_18887986.1| ATP-dependent DNA helicase RecQ [Enterococcus durans FB129-CNAB-4]
gi|430820279|ref|ZP_19438915.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0045]
gi|430825195|ref|ZP_19443402.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0164]
gi|430828452|ref|ZP_19446573.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0269]
gi|430830399|ref|ZP_19448457.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0333]
gi|430836119|ref|ZP_19454103.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0680]
gi|430846392|ref|ZP_19464252.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1133]
gi|430849996|ref|ZP_19467763.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1185]
gi|430854500|ref|ZP_19472213.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1392]
gi|430862059|ref|ZP_19479411.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1573]
gi|430870711|ref|ZP_19483355.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1575]
gi|430959055|ref|ZP_19486919.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1576]
gi|431009975|ref|ZP_19489500.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1578]
gi|431259067|ref|ZP_19505244.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1623]
gi|431295363|ref|ZP_19507251.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1626]
gi|431539307|ref|ZP_19517811.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1731]
gi|431745858|ref|ZP_19534696.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2134]
gi|431748632|ref|ZP_19537388.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2297]
gi|431754503|ref|ZP_19543164.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2883]
gi|431765287|ref|ZP_19553802.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E4215]
gi|431766872|ref|ZP_19555332.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1321]
gi|431770492|ref|ZP_19558892.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1644]
gi|431773015|ref|ZP_19561349.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2369]
gi|431776118|ref|ZP_19564386.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2560]
gi|431778420|ref|ZP_19566631.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E4389]
gi|431782219|ref|ZP_19570356.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E6012]
gi|431785394|ref|ZP_19573419.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E6045]
gi|68194922|gb|EAN09391.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Enterococcus faecium DO]
gi|257812340|gb|EEV41098.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,230,933]
gi|257816760|gb|EEV44088.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,231,502]
gi|257826049|gb|EEV52675.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,231,410]
gi|257828753|gb|EEV55360.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,231,408]
gi|260074918|gb|EEW63234.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium C68]
gi|260078079|gb|EEW65785.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TC 6]
gi|289161912|gb|EFD09781.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium D344SRF]
gi|364090480|gb|EHM33059.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E4452]
gi|364091728|gb|EHM34166.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E4453]
gi|378938100|gb|AFC63172.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium Aus0004]
gi|404453407|gb|EKA00467.1| ATP-dependent DNA helicase RecQ [Enterococcus sp. GMD4E]
gi|425724200|gb|EKU87084.1| ATP-dependent DNA helicase RecQ [Enterococcus durans FB129-CNAB-4]
gi|430439769|gb|ELA50090.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0045]
gi|430446426|gb|ELA56106.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0164]
gi|430483001|gb|ELA60100.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0333]
gi|430483560|gb|ELA60633.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0269]
gi|430488693|gb|ELA65347.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0680]
gi|430536691|gb|ELA77058.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1185]
gi|430539186|gb|ELA79448.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1133]
gi|430548159|gb|ELA88064.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1392]
gi|430549350|gb|ELA89182.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1573]
gi|430556740|gb|ELA96237.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1576]
gi|430558847|gb|ELA98247.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1575]
gi|430560470|gb|ELA99766.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1578]
gi|430577162|gb|ELB15767.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1623]
gi|430581453|gb|ELB19898.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1626]
gi|430594570|gb|ELB32539.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1731]
gi|430609761|gb|ELB46940.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2134]
gi|430613405|gb|ELB50421.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2297]
gi|430619097|gb|ELB55925.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2883]
gi|430628820|gb|ELB65251.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E4215]
gi|430631745|gb|ELB68045.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1321]
gi|430635419|gb|ELB71515.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1644]
gi|430637302|gb|ELB73325.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2369]
gi|430641855|gb|ELB77649.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2560]
gi|430643966|gb|ELB79669.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E4389]
gi|430647363|gb|ELB82809.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E6045]
gi|430648020|gb|ELB83450.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E6012]
Length = 590
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDH 67
F L +GL K+ S L LIS GYL TI Y + V+++G Q L G
Sbjct: 441 FGHLSTYGLMKNQSQKETMQLIEYLISNGYLL-TINGEYPVLKVTERGIQVLKGQESVYR 499
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ P K L +E E D L+ +L E R LA
Sbjct: 500 KEP-------------------------KKVQQLSDE---ETDT-LFEVLRELRTDLASE 530
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 531 AGVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKN 582
>gi|301025732|ref|ZP_07189247.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 69-1]
gi|419918818|ref|ZP_14436995.1| ATP-dependent DNA helicase RecQ [Escherichia coli KD2]
gi|300395855|gb|EFJ79393.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 69-1]
gi|388389458|gb|EIL50989.1| ATP-dependent DNA helicase RecQ [Escherichia coli KD2]
Length = 611
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFVKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 545 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
>gi|423316589|ref|ZP_17294494.1| ATP-dependent DNA helicase RecQ [Bergeyella zoohelcum ATCC 43767]
gi|405583639|gb|EKB57579.1| ATP-dependent DNA helicase RecQ [Bergeyella zoohelcum ATCC 43767]
Length = 733
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
L G+GKD + N+WK++ Q ++ + I + Y + ++ +G +L +
Sbjct: 458 LFGIGKDETDNFWKSILRQAAVQSFIEKDI-ETYGILKLTPKGNDFLQNKD--------- 507
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
EM AE+ + ++ +++ + E G D L+ L + RKK+A G PY
Sbjct: 508 --KYEMKIAEDR---AYDLSQMRNESKAEQYGQGGMDEVLFGQLKQLRKKVAEKLGIPPY 562
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D +++ + + P T + I GV + +G Q I
Sbjct: 563 TVFMDYSLEDMTVQYPITVQEIGKIYGVGEGKAKKYGAEFAQFI 606
>gi|431368686|ref|ZP_19509500.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1627]
gi|431501927|ref|ZP_19515174.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1634]
gi|430584274|gb|ELB22624.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1627]
gi|430587840|gb|ELB26056.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1634]
Length = 590
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDH 67
F L +GL K+ S L LIS GYL TI Y + V+++G Q L G
Sbjct: 441 FGHLSTYGLMKNQSQKETMQLIEYLISNGYLL-TINGEYPVLKVTERGIQVLKGQESVYR 499
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ P K L +E E D L+ +L E R LA
Sbjct: 500 KEP-------------------------KKVQQLSDE---ETDT-LFEVLRELRTDLASE 530
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 531 AGVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKN 582
>gi|430844416|ref|ZP_19462314.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1050]
gi|431228472|ref|ZP_19501613.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1622]
gi|430497006|gb|ELA73065.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1050]
gi|430574774|gb|ELB13537.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1622]
Length = 590
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDH 67
F L +GL K+ S L LIS GYL TI Y + V+++G Q L G
Sbjct: 441 FGHLSTYGLMKNQSQKETMQLIEYLISNGYLL-TINGEYPVLKVTERGIQVLKGQESVYR 499
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ P K L +E E D L+ +L E R LA
Sbjct: 500 KEP-------------------------KKVQQLSDE---ETDT-LFEVLRELRTDLASE 530
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 531 AGVPPYVVFSDSTLKEMSRIRPSSRLEMLQIKGVGQSKLDKYGEAFLSRIKN 582
>gi|406674061|ref|ZP_11081273.1| ATP-dependent DNA helicase RecQ [Bergeyella zoohelcum CCUG 30536]
gi|405584835|gb|EKB58711.1| ATP-dependent DNA helicase RecQ [Bergeyella zoohelcum CCUG 30536]
Length = 733
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
L G+GKD + N+WK++ Q ++ + I + Y + ++ +G +L +
Sbjct: 458 LFGIGKDETDNFWKSILRQAAVQSFIEKDI-ETYGILKLTPKGNDFLQNKD--------- 507
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
EM AE+ + ++ +++ + E G D L+ L + RKK+A G PY
Sbjct: 508 --KYEMKIAEDR---AYDLSQMRNESKAEQYGQGGMDEVLFGQLKQLRKKVAEKLGIPPY 562
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D +++ + + P T + I GV + +G Q I
Sbjct: 563 TVFMDYSLEDMTVQYPITVQEIGKIYGVGEGKAKKYGAEFAQFI 606
>gi|417837551|ref|ZP_12483789.1| ATP-dependent DNA helicase RecQ [Lactobacillus johnsonii pf01]
gi|338761094|gb|EGP12363.1| ATP-dependent DNA helicase RecQ [Lactobacillus johnsonii pf01]
Length = 598
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 86 ETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIA 145
+ IS N+ + S L N+ SE + L+ L E R +LA+ G + + D++++ +A
Sbjct: 502 QKISKNI---RKSIKLTNQ-ISEKENNLFLRLKETRLELAKEQGIPAFYIFSDKSLRDMA 557
Query: 146 LARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
L +P TK NI GV Q + +G +L TIR
Sbjct: 558 LQKPKTKTDFLNISGVGQAKLKAYGQIMLDTIR 590
>gi|152998934|ref|YP_001364615.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS185]
gi|151363552|gb|ABS06552.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS185]
Length = 607
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 23/176 (13%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
+VD DKL G+GKD S +W ++ QLI G ++ DV R S++ SA
Sbjct: 446 IVDRGHDKLTTWGIGKDKSHEYWLSVIRQLIHLGLASQ---DVTRGSSITLN-----PSA 497
Query: 64 RPDHQPPLLLTFNGE--MVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
RP GE ++ AE +++ + S N D +L+ L R
Sbjct: 498 RP--------VLKGEVALMLAEPRIQLTTTKRKVSQSKAPLN-----YDRKLFARLKLLR 544
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ +A PY + D T+ ++A P++ + ++GV + + GD L I
Sbjct: 545 RTIAEQQDVPPYLVFNDATLAEMAAMMPTSAGEMLAVNGVGERKLSRFGDAFLDEI 600
>gi|160873520|ref|YP_001552836.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS195]
gi|378706760|ref|YP_005271654.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS678]
gi|418025211|ref|ZP_12664191.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS625]
gi|160859042|gb|ABX47576.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS195]
gi|315265749|gb|ADT92602.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS678]
gi|353535624|gb|EHC05186.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS625]
Length = 607
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 23/176 (13%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
+VD DKL G+GKD S +W ++ QLI G ++ DV R S++ SA
Sbjct: 446 IVDRGHDKLTTWGIGKDKSHEYWLSVIRQLIHLGLASQ---DVTRGSSITLN-----PSA 497
Query: 64 RPDHQPPLLLTFNGE--MVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
RP GE ++ AE +++ + S N D +L+ L R
Sbjct: 498 RP--------VLKGEVALMLAEPRIQLTTTKRKVSQSKAPLN-----YDRKLFARLKLLR 544
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ +A PY + D T+ ++A P++ + ++GV + + GD L I
Sbjct: 545 RTIAEQQDVPPYLVFNDATLAEMAAMMPTSAGEMLAVNGVGERKLSRFGDAFLDEI 600
>gi|150025301|ref|YP_001296127.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium psychrophilum
JIP02/86]
gi|149771842|emb|CAL43316.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium psychrophilum
JIP02/86]
Length = 731
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
L G GK +W + + G L++ I + Y + V+++G ++ + + ++
Sbjct: 459 LFGCGKAFDERYWMAVLRLALVGGLLSKDI-ETYGIIKVTEKGLDFIKNPQS-----FMM 512
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
+ + E + E+ +S++ K S T AD L ML + RKK+A+ G P+
Sbjct: 513 SEDHEYSETEDEAIVSAS----KVSGT--------ADEVLMSMLRDLRKKVAKKLGVPPF 560
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D +++ +AL P T L+N+ GV + +G ++ I
Sbjct: 561 VVFQDPSLEDMALKYPITLDELSNVHGVGEGKAKKYGKDFIELI 604
>gi|419850730|ref|ZP_14373705.1| ATP-dependent DNA helicase RecQ [Bifidobacterium longum subsp.
longum 35B]
gi|419852297|ref|ZP_14375185.1| ATP-dependent DNA helicase RecQ [Bifidobacterium longum subsp.
longum 2-2B]
gi|386408263|gb|EIJ23185.1| ATP-dependent DNA helicase RecQ [Bifidobacterium longum subsp.
longum 35B]
gi|386411299|gb|EIJ26041.1| ATP-dependent DNA helicase RecQ [Bifidobacterium longum subsp.
longum 2-2B]
Length = 651
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 89 SSNVGDLKSSATLENEGFS-----EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKK 143
S V D SA + + + + L+ L E R+ +A+ G PY + D+T++
Sbjct: 549 SGGVADTADSANVPGDALGSYIPDDDEESLFQKLRELRRTIAQEIGKPPYIVFSDKTLRD 608
Query: 144 IALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+A +P T A+ ++GV QH + +G +QTI
Sbjct: 609 MARIKPVTNAQFLAVNGVGQHKLDLYGQRFMQTI 642
>gi|42519100|ref|NP_965030.1| ATP-dependent DNA helicase RecQ [Lactobacillus johnsonii NCC 533]
gi|41583387|gb|AAS08996.1| ATP-dependent DNA helicase RecQ [Lactobacillus johnsonii NCC 533]
Length = 598
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 86 ETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIA 145
+ IS N+ + S L N+ SE + L+ L E R +LA+ G + + D++++ +A
Sbjct: 502 QKISKNI---RKSIQLTNQ-ISEKENNLFLRLKETRLELAKEQGIPAFYIFSDKSLRDMA 557
Query: 146 LARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
L +P TK NI GV Q + +G +L TIR
Sbjct: 558 LQKPKTKTDFLNISGVGQAKLKAYGQIMLDTIR 590
>gi|56477822|ref|YP_159411.1| ATP-dependent DNA helicase protein [Aromatoleum aromaticum EbN1]
gi|56313865|emb|CAI08510.1| ATP-dependent DNA helicase protein [Aromatoleum aromaticum EbN1]
Length = 610
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 19/177 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ KV D + D++ G+G D W+TL QL++ G L D + ++++
Sbjct: 449 TDKVRDWKHDQVSTFGIGADLDEKTWRTLFRQLVARGLLA-VDHDRHSALTLT------- 500
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
D PLL GE AE ++ K S + + + L+ L
Sbjct: 501 -----DLARPLL---RGE---AEFALRLAPEKRRAKRSRSTRLDIPDGVPLTLFDRLRAW 549
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R AR Y + D T+++IALARP+T A LA I G+ + +G +L I
Sbjct: 550 RAATARERNVPAYVIFHDATLREIALARPATLAELAGISGIGDRKLDAYGADILAEI 606
>gi|422348938|ref|ZP_16429830.1| ATP-dependent DNA helicase RecQ [Sutterella wadsworthensis
2_1_59BFAA]
gi|404658990|gb|EKB31852.1| ATP-dependent DNA helicase RecQ [Sutterella wadsworthensis
2_1_59BFAA]
Length = 607
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 17/178 (9%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ +V DKL +G+D S+ W+ L QL++ + V + + L
Sbjct: 442 TDRVARFSHDKLSTWSIGQDLSAAEWRILLRQLVARHVVW---------VDPTARNALSL 492
Query: 61 GSARPDHQPPLLLTFNGEM-VDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
G A D LL N ++ V ET ++ A L+ FS+ D LY L +
Sbjct: 493 GEAARD-----LLRGNMKISVRKRVAETRRKRREHSQTEALLQE--FSKRDRSLYEALRQ 545
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R A+ G PY + D T+ +I RP++ L I GV + ++ +GD +L +
Sbjct: 546 WRSDEAKSLGKPPYVIFKDATLLEIVRERPTSPEALRRISGVGEKKLVNYGDAVLDIV 603
>gi|385825920|ref|YP_005862262.1| ATP-dependent DNA helicase [Lactobacillus johnsonii DPC 6026]
gi|329667364|gb|AEB93312.1| ATP-dependent DNA helicase [Lactobacillus johnsonii DPC 6026]
Length = 598
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 86 ETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIA 145
+ IS N+ + S L N+ SE + L+ L E R +LA+ G + + D++++ +A
Sbjct: 502 QKISKNI---RKSIQLTNQ-ISEKENNLFLRLKETRLELAKEQGIPAFYIFSDKSLRDMA 557
Query: 146 LARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
L +P TK NI GV Q + +G +L TIR
Sbjct: 558 LQKPKTKTDFLNISGVGQAKLKAYGQIMLDTIR 590
>gi|227546330|ref|ZP_03976379.1| ATP-dependent DNA helicase RecQ [Bifidobacterium longum subsp.
longum ATCC 55813]
gi|227213311|gb|EEI81183.1| ATP-dependent DNA helicase RecQ [Bifidobacterium longum subsp.
infantis ATCC 55813]
Length = 651
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 89 SSNVGDLKSSATLENEGFS-----EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKK 143
S V D SA + + + + L+ L E R+ +A+ G PY + D+T++
Sbjct: 549 SGGVADTADSANVPGDALGSYIPDDDEESLFQKLRELRRTIAQEIGKPPYIVFSDKTLRD 608
Query: 144 IALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+A +P T A+ ++GV QH + +G +QTI
Sbjct: 609 MARIKPVTNAQFLAVNGVGQHKLDLYGQRFMQTI 642
>gi|431623566|ref|ZP_19522921.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1904]
gi|430603231|gb|ELB40762.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1904]
Length = 590
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL-GSARPDH 67
F L +GL K+ S L LIS GYL TI Y + V+++G Q L G
Sbjct: 441 FGHLSTYGLMKNQSQKETMQLIEYLISNGYLL-TINGEYPVLKVTERGIQVLKGQESVYR 499
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ P K L +E E D L+ +L E R LA
Sbjct: 500 KEP-------------------------KKVQQLSDE---ETDT-LFEVLRELRTDLASE 530
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
G PY + D T+K+++ RPS++ + I GV Q + +G+ L I++
Sbjct: 531 AGVPPYVVFSDSTLKEMSRIRPSSRLEILQIKGVGQSKLDKYGEAFLSRIKN 582
>gi|423015908|ref|ZP_17006629.1| ATP-dependent DNA helicase RecQ [Achromobacter xylosoxidans AXX-A]
gi|338780967|gb|EGP45363.1| ATP-dependent DNA helicase RecQ [Achromobacter xylosoxidans AXX-A]
Length = 609
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 83/169 (49%), Gaps = 16/169 (9%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
+ L + G+G+D S W+ + QL++ G LT + Y T+++++ + L R
Sbjct: 451 ETLSVFGVGEDLSDTAWRGVLRQLLAQGLLT-VDNEGYGTLALTEGSRAVLKGERQ---- 505
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQ-LYHMLLEERKKLARVT 128
L+L E +T S G ++ A + A++Q ++ L R ++A+
Sbjct: 506 -LMLRRE------SEKKTRSGKTGGTRAKAAAID---LPAELQPVFEALRAWRGEVAKSH 555
Query: 129 GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
G Y + D T+++IALA+P + L++I GV + +G+ +LQ +
Sbjct: 556 GVPAYVIFHDATLREIALAQPESMDALSHISGVGARKLEAYGEEILQRV 604
>gi|148221|gb|AAA67618.1| DNA-dependent ATPase, DNA helicase [Escherichia coli str. K-12
substr. MG1655]
Length = 610
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 24/179 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETIS-SNVGDLKSSATLENEGFSEADMQLYHMLLE 119
+ARP V AE ++ + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------------VLAESSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRK 542
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 LRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 601
>gi|217971615|ref|YP_002356366.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS223]
gi|217496750|gb|ACK44943.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS223]
Length = 607
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 23/176 (13%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
+VD DKL G+GKD S +W ++ QLI G ++ DV R S++ SA
Sbjct: 446 IVDRGHDKLTTWGIGKDKSHEYWLSVIRQLIHLGLASQ---DVTRGSSITLN-----PSA 497
Query: 64 RPDHQPPLLLTFNGE--MVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
RP GE ++ AE +++ + S N D +L+ L R
Sbjct: 498 RP--------VLKGEVALMLAEPRIQLTTTKRKVSQSKAPLN-----YDRKLFARLKLLR 544
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ +A PY + D T+ ++A P++ + ++GV + + GD L I
Sbjct: 545 RTIAEQQDVPPYLVFNDATLAEMAAMMPTSAGEMLAVNGVGERKLSRFGDAFLDEI 600
>gi|154253433|ref|YP_001414257.1| ATP-dependent DNA helicase RecQ [Parvibaculum lavamentivorans DS-1]
gi|154157383|gb|ABS64600.1| ATP-dependent DNA helicase RecQ [Parvibaculum lavamentivorans DS-1]
Length = 633
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV +Q D L G+GKD W+++ QL + G ++ Y + + +
Sbjct: 470 TEKVERSQHDDLPTFGVGKDLDQKSWQSVFRQLAARGIIS-IDHTAYGALKLEE------ 522
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
SARP G+ + +S ++A+ + + E + L+ L E
Sbjct: 523 -SARP--------VLQGQQPVELRRDPVSKRRQRAAAAASTDPLAYPEEEA-LFQALRAE 572
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R +LAR G PY + D +++++A RP++ + +I GV + +G+ L +
Sbjct: 573 RLRLAREQGVPPYVIFHDTSLREMARRRPASVEDMTDIPGVGGAKIARYGEAFLAVV 629
>gi|126172636|ref|YP_001048785.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS155]
gi|386339411|ref|YP_006035777.1| RecQ familyATP-dependent DNA helicase [Shewanella baltica OS117]
gi|125995841|gb|ABN59916.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS155]
gi|334861812|gb|AEH12283.1| ATP-dependent DNA helicase, RecQ family [Shewanella baltica OS117]
Length = 607
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 23/176 (13%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
+VD DKL G+GKD S +W ++ QLI G ++ DV R S++ SA
Sbjct: 446 IVDRGHDKLTTWGIGKDKSHEYWLSVIRQLIHLGLASQ---DVTRGSSITLN-----PSA 497
Query: 64 RPDHQPPLLLTFNGE--MVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
RP GE ++ AE +++ + S N D +L+ L R
Sbjct: 498 RP--------VLKGEVALMLAEPRIQLTTTKRKVSQSKAPLN-----YDRKLFARLKLLR 544
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ +A PY + D T+ ++A P++ + ++GV + + GD L I
Sbjct: 545 RTIAEQQDVPPYLVFNDATLAEMAAMMPTSAGEMLAVNGVGERKLSRFGDAFLDEI 600
>gi|110833596|ref|YP_692455.1| ATP-dependent DNA helicase RecQ [Alcanivorax borkumensis SK2]
gi|110646707|emb|CAL16183.1| ATP-dependent DNA helicase RecQ [Alcanivorax borkumensis SK2]
Length = 713
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 20/177 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S KV A D + +G + S+ W+++ QL++ G LT + Y + ++ + YL
Sbjct: 438 SDKVASAGHDHVSTWNIGNEFSATQWRSIYRQLVARGLLTVDMNG-YGALQLTDACRPYL 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+P L E+ A++ G KS + + +EAD L+ L
Sbjct: 497 RGEQP-------LLLRKEIAKAKK-------AGLRKSQSNV-----AEADRTLWEALRAC 537
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
RK+LA G PY + D T+ + RP + + GV + + D L +
Sbjct: 538 RKRLAEEEGVPPYVVFHDATLMDMLAIRPRNHREFSAVSGVGDRKLDRYSDDFLAVL 594
>gi|377579442|ref|ZP_09808410.1| ATP-dependent DNA helicase RecQ [Escherichia hermannii NBRC 105704]
gi|377539235|dbj|GAB53575.1| ATP-dependent DNA helicase RecQ [Escherichia hermannii NBRC 105704]
Length = 609
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+GKD S W ++ QLI G+ T+ I Q
Sbjct: 444 NQRIRDMGHDKLPVYGIGKDQSHEHWVSIIRQLIHMGFATQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE+ + V LK ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGEVA----LKLAVPRVIALKPRMAQKSYG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P + + I+GV + G + IR
Sbjct: 543 RKAIADEENIPPYVVFNDATLIEMAEQMPLSAGEMLGINGVGTRKLERFGKEFMALIR 600
>gi|417098561|ref|ZP_11959740.1| ATP-dependent DNA helicase protein [Rhizobium etli CNPAF512]
gi|327192724|gb|EGE59661.1| ATP-dependent DNA helicase protein [Rhizobium etli CNPAF512]
Length = 621
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 16/164 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G GKD W+++ QL++ G L + Y + + + + R
Sbjct: 469 VFGAGKDIPVRTWQSVCRQLLAMG-LIRVDHEAYGALKLEPEARAVFKHERQ-------- 519
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
F + A E T + KS+ S AD L+ L ER +A+ G PY
Sbjct: 520 VFFRKDRPASERRTKKVERSERKSA-------LSGADGSLFEALRAERMAIAKSLGVPPY 572
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D T+ A RP + L I GV Q + +GD L+ I
Sbjct: 573 VVFPDTTLIAFATERPRSHKELLAISGVGQAKLERYGDAFLEII 616
>gi|281420257|ref|ZP_06251256.1| ATP-dependent DNA helicase RecQ [Prevotella copri DSM 18205]
gi|281405752|gb|EFB36432.1| ATP-dependent DNA helicase RecQ [Prevotella copri DSM 18205]
Length = 620
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 84/189 (44%), Gaps = 16/189 (8%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S VV +++++ G+G+D +S W Q++ G+ E + + + V+ G + L
Sbjct: 432 SSAVVKNKYNEMKTFGVGRDTTSKDWNAYLLQMLQMGFF-EIAYNNHNYMKVTDLGWKVL 490
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEA----------- 109
+ +H L + +T+ + G + L E +E
Sbjct: 491 ---KGEHHVSLAYIEEDDKA-TRPKKTVRNRKGAIAQPGNLIPEVHAERVLFQEDSKGVE 546
Query: 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITH 169
D L+ L + RK LA G PY + D+++ ++A +P+TK ++ I G+ + + +
Sbjct: 547 DKGLFEHLRKIRKNLADEQGYPPYIVLSDKSLHELARMKPTTKNAMSLISGIGEFKLNKY 606
Query: 170 GDHLLQTIR 178
GD ++ IR
Sbjct: 607 GDTFIKAIR 615
>gi|373947884|ref|ZP_09607845.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS183]
gi|386326268|ref|YP_006022385.1| ATP-dependent DNA helicase RecQ [Shewanella baltica BA175]
gi|333820413|gb|AEG13079.1| ATP-dependent DNA helicase RecQ [Shewanella baltica BA175]
gi|373884484|gb|EHQ13376.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS183]
Length = 607
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 23/176 (13%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
+VD DKL G+GKD S +W ++ QLI G ++ DV R S++ SA
Sbjct: 446 IVDRGHDKLTTWGIGKDKSHEYWLSVIRQLIHLGLASQ---DVTRGSSITLN-----PSA 497
Query: 64 RPDHQPPLLLTFNGE--MVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
RP GE ++ AE +++ + S N D +L+ L R
Sbjct: 498 RP--------VLKGEVALMLAEPRIQLTTTKRKVSQSKAPLN-----YDRKLFARLKLLR 544
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ +A PY + D T+ ++A P++ + ++GV + + GD L I
Sbjct: 545 RTIAEQQDVPPYLVFNDATLAEMAAMMPTSAGEMLAVNGVGERKLSRFGDAFLDEI 600
>gi|260909474|ref|ZP_05916178.1| ATP-dependent helicase RecQ [Prevotella sp. oral taxon 472 str.
F0295]
gi|260636399|gb|EEX54385.1| ATP-dependent helicase RecQ [Prevotella sp. oral taxon 472 str.
F0295]
Length = 725
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 20/163 (12%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
G G+D W + +Q + GYL + +++ Y + V+ G++++ QP +
Sbjct: 457 GAGEDEDDKIWNPIIHQALIAGYLKKDVEN-YGLLKVTAAGRRFI------KQPQSFMIV 509
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
D + E + G S D +LY ML + RK +A PY +
Sbjct: 510 EDTDFDDDFDEEARDSCG-------------STLDPELYLMLKQLRKDVAEKHNVPPYVI 556
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
D +I+++A+A P T L NI GV +GD + I+
Sbjct: 557 FQDVSIEQMAVAYPITLEELQNIPGVGVGKAKRYGDAFCELIK 599
>gi|7428315|pir||BVECRQ DNA helicase recQ - Escherichia coli (strain K-12)
Length = 610
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 24/179 (13%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 446 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 497
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETIS-SNVGDLKSSATLENEGFSEADMQLYHMLLE 119
+ARP V AE ++ + LK A ++ G D +L+ L +
Sbjct: 498 EAARP--------------VLAESSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRK 542
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 LRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 601
>gi|383780266|ref|YP_005464832.1| putative ATP-dependent DNA helicase [Actinoplanes missouriensis
431]
gi|381373498|dbj|BAL90316.1| putative ATP-dependent DNA helicase [Actinoplanes missouriensis
431]
Length = 632
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 81/177 (45%), Gaps = 11/177 (6%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++KV + D+L + G+G D W+ + QL++ G+L ++ Y T++++++ + L
Sbjct: 455 TEKVSQFRHDELTVFGIGADLREAEWRGVVRQLLAGGFL--AVEGEYGTLALTERSGEVL 512
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R L E+ + S+ + +A + F E+ L+ L
Sbjct: 513 RGERK-------LMMRREVATRPSRSSSGSSSSSRQPAAAPAD--FPESAAPLFERLRAW 563
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
R +A+ G Y + D T++ IA P++ +L + GV Q + G+ +L+ +
Sbjct: 564 RGSVAKEQGVPAYVIFHDATLRAIAALAPASLDQLGTVTGVGQSKLAKFGEQVLEVV 620
>gi|372223763|ref|ZP_09502184.1| RecQ familyATP-dependent DNA helicase [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 733
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 20/206 (9%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
D+ + G+GKD + +WK L+ Q I G + + I + Y +S++++G+ +L A+P
Sbjct: 456 DEREVFGIGKDKDAFYWKALSRQTIVAGLMKKEI-ERYGVLSLTKEGEAFL--AKPSS-- 510
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
L+T + E DA + +++ K SA + AD L +L + RKK A+
Sbjct: 511 -FLMTLDHEYSDASDDTIVTAG----KGSANV-------ADEALLKLLKDLRKKEAKKND 558
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSL- 188
P+ + D +++ +AL P + L NI GV + +G + I + ++ ++
Sbjct: 559 VPPFVVFQDPSLEDMALKYPISMEELLNIHGVGEGKAKKYGKPFISLINNYVEENDIVRP 618
Query: 189 DGKVGEHTAFTR--KLHVVVNTRTKL 212
D V + T KL+++ N KL
Sbjct: 619 DDLVVKSTGANSGLKLYIIQNVDRKL 644
>gi|300777720|ref|ZP_07087578.1| ATP-dependent helicase RecQ [Chryseobacterium gleum ATCC 35910]
gi|300503230|gb|EFK34370.1| ATP-dependent helicase RecQ [Chryseobacterium gleum ATCC 35910]
Length = 734
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 14/172 (8%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
G GK+ N+WKT+ Q +L + I + Y + ++ +G+ L D + L
Sbjct: 459 FGFGKEEKDNYWKTILRQATVQNFLQKDI-ETYGVLKITDKGRNVLNGKSKD----VFLI 513
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYA 134
D + + S V + + D L+++L E RKK+A+ G PY
Sbjct: 514 AEDREFDLTQAKAESDQV---------QQQAGGGLDQNLFNLLKELRKKVAKKHGIPPYT 564
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNL 186
+ D +++ + + P T + I GV + +G I+ + N+
Sbjct: 565 VFMDPSLEDMTVQYPITVDEITKIYGVGEGKAKKYGKEFADYIKTYVEDNNI 616
>gi|332664724|ref|YP_004447512.1| ATP-dependent DNA helicase RecQ [Haliscomenobacter hydrossis DSM
1100]
gi|332333538|gb|AEE50639.1| ATP-dependent DNA helicase RecQ [Haliscomenobacter hydrossis DSM
1100]
Length = 732
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 84/178 (47%), Gaps = 18/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+K++ D F+K +G+GK N+W+++ + L + ++ Y + ++++G+ +L
Sbjct: 446 TKEIKDYAFNKKPSYGVGKGKDINFWESVYRHALLQDLLYKDVES-YGLLKLTEKGRDFL 504
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P Q PL + E +DA N D+ +A L D L +L +
Sbjct: 505 KKTYP-VQIPLNHDYEKEQIDA--------NNEDIGRTAVL--------DETLVGLLKDL 547
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
R++ A+ PY + D +++ +A P + + +I GV++ I +G ++ I+
Sbjct: 548 RRREAKRHNVPPYVIFQDPSLEDMATQYPISMDDMVHISGVSRGKAIRYGKAFVEMIK 605
>gi|409098551|ref|ZP_11218575.1| ATP-dependent DNA helicase RecQ [Pedobacter agri PB92]
Length = 729
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 116/289 (40%), Gaps = 46/289 (15%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLT 74
G+GK WK++ Q + YL + I D Y + +++QGK ++ + P L
Sbjct: 457 FGIGKQDGELLWKSVIRQAVLNNYLFKDI-DNYGLLKLTRQGKDFIIN-------PYSLK 508
Query: 75 FNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYA 134
F +E I + V D + +G D L +L + RKK+A+ P+
Sbjct: 509 F-------VLNELIETGVVDDEDDV---KQGTGALDTHLLQLLKDLRKKIAKQKSVPPFV 558
Query: 135 LCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGE 194
+ D +++++ P T L I GV + G ++ I+ K E
Sbjct: 559 VFQDPSLEEMCTHYPITTEELRQISGVGSGKAMKFGTPFIELIK------------KYVE 606
Query: 195 HTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLE 254
R + +++ T+ + K + + ++ IA+ G I + ++ +
Sbjct: 607 DNDIERPIDLIIKTQANKSQMKVSIIQNIDRQ-IGLEDIADSKG----ITYEEILKEVES 661
Query: 255 AVSEGFDINWTRLCDEV---GLTDEIF--------SAIQEAISKVGCKD 292
V+ G +N DEV DE+F +I EA++++G D
Sbjct: 662 IVNSGTKLNLNYFIDEVIDDDRQDEVFDYFRAAESDSIDEALNELGETD 710
>gi|392963657|ref|ZP_10329081.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
gi|387847620|emb|CCH51120.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
Length = 715
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 126/313 (40%), Gaps = 56/313 (17%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S+ V+ +D++ +G G+D W+ +QLI+ G + E D + + Q L
Sbjct: 447 SQAVLQGGYDQIKTYGAGRDLRFEEWRNYLHQLINVGVI-EVAYDQHYALRKGILADQVL 505
Query: 61 GSARPDHQPPLLLTFNGEMVD-AEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLE 119
F G VD + V +K+ + + L+ L
Sbjct: 506 --------------FGGRKVDLVRPDDAPKPVVEKVKTKTETQRD-------DLFERLRV 544
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLL-QTIR 178
RKKLA PY + D T++ +A RP+T L N+ GV + + G L + +
Sbjct: 545 LRKKLADEQNVPPYVIFTDTTLEDMARQRPTTPDALRNVSGVGERKLQLFGKQFLDEIVG 604
Query: 179 HLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPG 238
++ ++ +VGE + +L LT Y G++I +IA
Sbjct: 605 YVRGRV------QVGEKPKGSTQL---------LTLDLY-------NQGMTIDEIAA--- 639
Query: 239 RSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD-KLKPI 297
+ +V +L++ G+DI+ L T+ I+ AI+ VG ++ +LKP+
Sbjct: 640 -ERQLTTGSVAGHLVQLAKAGYDIDIASLVSPFERTE-----IERAIAVVGMEEGRLKPL 693
Query: 298 KNELPDDITYAHI 310
+ L Y+ +
Sbjct: 694 FDYLGGRYDYSKL 706
>gi|113971918|ref|YP_735711.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-4]
gi|113886602|gb|ABI40654.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-4]
Length = 607
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 19/174 (10%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
+VD DKL G+GKD S +W ++ QLI G ++ D+ R S++ SA
Sbjct: 446 IVDRGHDKLSTWGIGKDKSHEYWLSVIRQLIHLGLASQ---DITRGSSITLN-----PSA 497
Query: 64 RPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKK 123
RP GE+ I + ++K T ++ D +L+ L R+
Sbjct: 498 RP--------ILKGEVALMLAEPRI--QLTNIKRKVT-QSRAPLNYDRKLFARLKALRRT 546
Query: 124 LARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+A PY + D T+ ++A P++ + ++GV + + GD L I
Sbjct: 547 IAEEQDVPPYLVFNDATLAEMAAMMPTSPGEMLAVNGVGERKLSRFGDDFLDEI 600
>gi|383645126|ref|ZP_09957532.1| helicase [Streptomyces chartreusis NRRL 12338]
Length = 686
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 6/180 (3%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+ KV+ D+L + G+G D + W+ + QL++ G L ++ Y T+ +++ L
Sbjct: 467 TGKVIQFDHDQLSVFGIGDDLTEGEWRGVIRQLLAQGLLA--VEGEYGTLVLTEASGAVL 524
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
R + + PL + + S + + T E E + + L
Sbjct: 525 ---RREREVPLRKEPKKPVTSRSGSSSSSGSGRGERKGKTAAAE-LPEELLPAFEALRAW 580
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
R + AR G Y + D T+++IA PS+ A L I GV + + T+G+ +L+ + L
Sbjct: 581 RAEQAREQGVPAYVIFHDATLREIATVWPSSVAELGGISGVGEKKLATYGEGVLEVLASL 640
>gi|422784511|ref|ZP_16837291.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10509]
gi|323974402|gb|EGB69530.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10509]
Length = 609
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+++V D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRVRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P + + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPISASEMLSVNGVGMRKLERFGKPFMALIR 600
>gi|393773102|ref|ZP_10361501.1| ATP-dependent DNA helicase RecQ [Novosphingobium sp. Rr 2-17]
gi|392721484|gb|EIZ78950.1| ATP-dependent DNA helicase RecQ [Novosphingobium sp. Rr 2-17]
Length = 625
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 113 LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDH 172
L+ L E R+ LA+ G PY + D T++++A ARP+T +L I GV + +GD
Sbjct: 557 LFEALRELRRTLAQEAGVPPYVVFHDSTLREMAAARPTTLDQLGRIGGVGTRKLDAYGDA 616
Query: 173 LLQTIRH 179
L IR+
Sbjct: 617 FLAAIRN 623
>gi|291614340|ref|YP_003524497.1| ATP-dependent DNA helicase RecQ [Sideroxydans lithotrophicus ES-1]
gi|291584452|gb|ADE12110.1| ATP-dependent DNA helicase RecQ [Sideroxydans lithotrophicus ES-1]
Length = 614
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 28/178 (15%)
Query: 8 QFD--KLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARP 65
QF+ +L G+GK+ + W ++ QL++ G++ I+ G Q +ARP
Sbjct: 448 QFNHQQLSTFGIGKELAQQQWSSVYRQLVAAGFINVDIE--------GYGGLQLAEAARP 499
Query: 66 DHQPPLLLTFNGEM-----VDAEEHETISSNVGDLKSSATLENEGFSEA-DMQLYHMLLE 119
GE DAE + SS + + E F+ A D L+ L
Sbjct: 500 --------VLRGEQEVWLRRDAEPAKRKSS----MAERGSRLREAFAGANDDPLWLALKA 547
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+R +LAR G PY + D T+ +I +P T + I GV Q + +GD L +
Sbjct: 548 KRTELAREQGVPPYVIFHDSTLLEILNRKPQTLDEMGRISGVGQAKLAKYGDAFLLVV 605
>gi|218516305|ref|ZP_03513145.1| ATP-dependent DNA helicase protein [Rhizobium etli 8C-3]
Length = 205
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 16/164 (9%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLL 73
+ G GKD W+++ QL++ G L + Y + + + + R
Sbjct: 53 VFGAGKDIPVRTWQSVCRQLLAMG-LIRVDHEAYGALKLEPEARAVFKHERQ-------- 103
Query: 74 TFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPY 133
F + A E T + KS+ S A+ L+ L ER +A+ G PY
Sbjct: 104 VFFRKDRPASERRTKKVERSERKSA-------LSGANGSLFEALRAERMAIAKSLGVPPY 156
Query: 134 ALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ D T+ A RP ++ L I GV Q + +GD L+ I
Sbjct: 157 VVFPDTTLIAFATERPRSRKELLAISGVGQAKLERYGDAFLEII 200
>gi|117922195|ref|YP_871387.1| ATP-dependent DNA helicase RecQ [Shewanella sp. ANA-3]
gi|117614527|gb|ABK49981.1| ATP-dependent DNA helicase RecQ [Shewanella sp. ANA-3]
Length = 607
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 19/174 (10%)
Query: 4 VVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63
+VD DKL G+GKD S +W ++ QLI G ++ D+ R S++ SA
Sbjct: 446 IVDRGHDKLSTWGIGKDKSHEYWLSVIRQLIHLGLASQ---DITRGSSITLN-----PSA 497
Query: 64 RPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKK 123
RP GE+ I + ++K T ++ D +L+ L R+
Sbjct: 498 RP--------ILKGEVALMLAEPRI--QLTNIKRKVT-QSRAPLNYDRKLFARLKALRRT 546
Query: 124 LARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+A PY + D T+ ++A P++ + ++GV + + GD L I
Sbjct: 547 IAEEQDVPPYLVFNDATLAEMAAMMPTSPGEMLAVNGVGERKLSRFGDDFLDEI 600
>gi|260596045|ref|YP_003208616.1| ATP-dependent DNA helicase RecQ [Cronobacter turicensis z3032]
gi|260215222|emb|CBA27089.1| ATP-dependent DNA helicase recQ [Cronobacter turicensis z3032]
Length = 635
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++G+G+D S W ++ QLI G +T+ I + + +++ + +L
Sbjct: 470 NQRIRELGHDKLKVYGIGRDQSQEHWVSVIRQLIHLGVVTQNIAQ-HSALQLTEAARPFL 528
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ PL+L V LK + ++ G D +L+ L +
Sbjct: 529 RG-----EAPLMLAV--------------PRVAALKPRVSQKSYG-GNYDRKLFAKLRKL 568
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P + + I+GV + G + IR
Sbjct: 569 RKAIADEENIPPYVVFNDATLIEMAEQMPLSPGEMLGINGVGTRKLERFGRPFMTLIR 626
>gi|170738371|ref|YP_001767026.1| ATP-dependent DNA helicase RecQ [Methylobacterium sp. 4-46]
gi|168192645|gb|ACA14592.1| ATP-dependent DNA helicase RecQ [Methylobacterium sp. 4-46]
Length = 615
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 14/167 (8%)
Query: 11 KLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPP 70
KL G+G D W+++ QL + G + E +D Y ++++++G+ L P P
Sbjct: 451 KLKTFGVGADKPVAAWRSILRQLFAAGAVAEN-QDGYGGLAMTEKGEAILFGREPVQLRP 509
Query: 71 LLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGT 130
D E + TL G S D L+ L R LAR G
Sbjct: 510 ----------DPEPKAPKERRARGAERDDTL---GLSSEDEALFQHLRGLRATLARQEGV 556
Query: 131 APYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
A Y + D+T+ ++A A+P L ++ GV + +G+ + TI
Sbjct: 557 AAYMIFPDRTLVEMARAKPVDLWALRSVHGVGERKREAYGEAFVATI 603
>gi|407926019|gb|EKG18990.1| BRCT domain-containing protein [Macrophomina phaseolina MS6]
Length = 865
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%)
Query: 113 LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDH 172
LY L +R LA G PY L +Q +K++ALARP T L I G+ + + G+
Sbjct: 383 LYDALTVKRADLASEKGMKPYHLVTNQVLKRVALARPQTADELKAIKGLGEQGIRNFGET 442
Query: 173 LLQTIRHL 180
+L TI+ L
Sbjct: 443 MLATIKAL 450
>gi|224535963|ref|ZP_03676502.1| hypothetical protein BACCELL_00827 [Bacteroides cellulosilyticus
DSM 14838]
gi|423226021|ref|ZP_17212487.1| ATP-dependent DNA helicase RecQ [Bacteroides cellulosilyticus
CL02T12C19]
gi|224522418|gb|EEF91523.1| hypothetical protein BACCELL_00827 [Bacteroides cellulosilyticus
DSM 14838]
gi|392630878|gb|EIY24859.1| ATP-dependent DNA helicase RecQ [Bacteroides cellulosilyticus
CL02T12C19]
Length = 727
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 19/164 (11%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
G G W + Q + GYL++ +++ Y + V+ +GK++L H +T
Sbjct: 458 GSGMGEEDRTWNAVIRQALIAGYLSKDVEN-YGLLKVTDEGKKFL-----KHPKSFKITE 511
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
+ + + EE A G D LY ML + RKKL++ PY +
Sbjct: 512 DNDFEEVEEE-------------APARGGGSCAVDPALYSMLKDLRKKLSKKLEVPPYVI 558
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
D +++ +A P T L NI GV +G+ + I+
Sbjct: 559 FQDPSLEAMATIYPVTLDELQNIPGVGAGKAKRYGEEFCKLIKR 602
>gi|163849463|ref|YP_001637506.1| ATP-dependent DNA helicase RecQ [Methylobacterium extorquens PA1]
gi|163661068|gb|ABY28435.1| ATP-dependent DNA helicase RecQ [Methylobacterium extorquens PA1]
Length = 615
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 23/174 (13%)
Query: 12 LLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS-----ARPD 66
L G+G D W+ L QL + G + E D Y + ++++G+ L RPD
Sbjct: 452 LKTFGVGNDKPVAAWRALLRQLFAAGAVAENT-DGYGGLVMTEKGEAILFGRETIEVRPD 510
Query: 67 HQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLAR 126
+P AE ++ D E SEAD L+ L R +AR
Sbjct: 511 PEPK----------KAEPRSRRATPRDD-------EANALSEADEALFQHLRGLRATIAR 553
Query: 127 VTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
G A + + D+T+ ++A ++P L + GV + +G+ TIR
Sbjct: 554 AEGIAAFMVFPDRTLIEMARSKPVDLWALRTVHGVGERKREAYGERFTDTIREF 607
>gi|254558659|ref|YP_003065754.1| ATP-dependent DNA helicase [Methylobacterium extorquens DM4]
gi|254265937|emb|CAX21686.1| ATP-dependent DNA helicase [Methylobacterium extorquens DM4]
Length = 615
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 23/174 (13%)
Query: 12 LLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS-----ARPD 66
L G+G D W+ L QL + G + E D Y + ++++G+ L RPD
Sbjct: 452 LKTFGVGNDKPVAAWRALLRQLFAAGAVAENT-DGYGGLVMTEKGEAILFGRETIEVRPD 510
Query: 67 HQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLAR 126
+P AE ++ D E SEAD L+ L R +AR
Sbjct: 511 PEPK----------KAEPRSRRATPRDD-------EANALSEADEALFQHLRGLRATIAR 553
Query: 127 VTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180
G A + + D+T+ ++A ++P L + GV + +G+ TIR
Sbjct: 554 AEGIAAFMVFPDRTLIEMARSKPVDLWALRTVHGVGERKREAYGERFTDTIREF 607
>gi|153874101|ref|ZP_02002445.1| ATP-dependent DNA helicase RecQ [Beggiatoa sp. PS]
gi|152069435|gb|EDN67555.1| ATP-dependent DNA helicase RecQ [Beggiatoa sp. PS]
Length = 520
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 24/182 (13%)
Query: 2 KKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61
+++ + D++ G+GK+ S W ++ QLI+ ++T I+ Y ++ +++ + L
Sbjct: 231 ERIEKLRHDRVSTFGIGKELSQEQWHSVFRQLIAKDFVTVDIEG-YGSLQLTENARSLL- 288
Query: 62 SARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEER 121
GE + IS+ K ++ F + D L+ L +R
Sbjct: 289 --------------RGEQRIDLRKDIISTQKKSEKRYNRSIHQSFVDKDKILWETLCAKR 334
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHG--------DHL 173
+LA+ PY + D T++++ L RP T A + G+ +H + +G DH
Sbjct: 335 MELAQAQNVIPYMIFHDSTLEEMILQRPRTLNEFAQLPGMGRHKLERYGQIFIDVLDDHT 394
Query: 174 LQ 175
LQ
Sbjct: 395 LQ 396
>gi|444376043|ref|ZP_21175292.1| ATP-dependent DNA helicase RecQ [Enterovibrio sp. AK16]
gi|443679814|gb|ELT86465.1| ATP-dependent DNA helicase RecQ [Enterovibrio sp. AK16]
Length = 616
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 21/168 (12%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
+KL +GLGK S +W ++ QLI GYL + I SV Q ++ ARP
Sbjct: 456 EKLSTYGLGKAFSHEYWVSIFRQLIHRGYLVQNIA----RSSVLQLTEE----ARP---- 503
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
GE+ E +G L + + G D +L+ L + RK +A
Sbjct: 504 ----VLRGEIA----LELAVPRLG-LSPRSKADKLGKRNYDKKLFAKLRKLRKAIADEED 554
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D T+ ++A P+++ L ++GV Q + +G+ L I
Sbjct: 555 IPPYVVFNDATLIEMAEMIPTSQGELLAVNGVGQRKLEKYGNVFLDVI 602
>gi|254491083|ref|ZP_05104264.1| ATP-dependent DNA helicase RecQ [Methylophaga thiooxidans DMS010]
gi|224463596|gb|EEF79864.1| ATP-dependent DNA helicase RecQ [Methylophaga thiooxydans DMS010]
Length = 708
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 126/311 (40%), Gaps = 58/311 (18%)
Query: 8 QFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDH 67
Q D++ G+G + ++ W+ + QLI+ GYL I Y + ++++ + L S
Sbjct: 448 QHDQISTFGIGTELNATQWRGIFRQLIATGYLDIDISR-YGALRLTEKCRAILRS----- 501
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARV 127
+ LLL ++ ++ G ++S ++E +L+ L + R ++
Sbjct: 502 EQTLLLR-------KQQDRKATTKAGKKQASVRPQDE-------KLWEALRQCRSDISHK 547
Query: 128 TGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH--LSQKLN 185
G PY + D T++++ RP A + I GV + + +G L+ I+ LS+ LN
Sbjct: 548 NGVPPYVIFHDATLQEMCRYRPKDLAAMQRISGVGEQKLNHYGHVFLEVIQQHPLSELLN 607
Query: 186 LSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKE 245
L + + + HE G ++ IA + +K
Sbjct: 608 NGLSDTINDTL-------------------------LLHEKGHAVDAIA----KQRDLKL 638
Query: 246 QTVVDYLLEAVSEG-FDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDK-LKPIKNELPD 303
TV +L E ++ G D+ D + L AI I +G K + LK I L +
Sbjct: 639 NTVYSHLAEGINAGLLDVK-----DVLDLDSAEIEAITLTIESLGDKSQSLKAIYQALDE 693
Query: 304 DITYAHIKACL 314
Y I+ L
Sbjct: 694 VYDYGSIRCVL 704
>gi|157368442|ref|YP_001476431.1| ATP-dependent DNA helicase RecQ [Serratia proteamaculans 568]
gi|157320206|gb|ABV39303.1| ATP-dependent DNA helicase RecQ [Serratia proteamaculans 568]
Length = 614
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 22/182 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + +KL ++G+G++ ++ W ++ QLI G++T+ I Q
Sbjct: 448 NQRIREYGHEKLPVYGIGREQTTEHWTSVLRQLIHLGFITQNI--------AMHSALQLT 499
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGF-SEADMQLYHMLLE 119
+ARP GE+ E + + LK+ ++ + + D +L+ L +
Sbjct: 500 EAARP--------VLRGEL----ELQLAVPRIQSLKARSSSNQKSYGGNYDRKLFAKLRK 547
Query: 120 ERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR- 178
RK +A PY + D T+ ++A P L +++GV Q + G + IR
Sbjct: 548 LRKSIADEENIPPYVVFNDATLLEMAEQMPIKAGDLLSVNGVGQRKLERFGAPFMAMIRD 607
Query: 179 HL 180
HL
Sbjct: 608 HL 609
>gi|238786204|ref|ZP_04630153.1| ATP-dependent DNA helicase recQ [Yersinia bercovieri ATCC 43970]
gi|238712894|gb|EEQ04957.1| ATP-dependent DNA helicase recQ [Yersinia bercovieri ATCC 43970]
Length = 610
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 19/178 (10%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ + DKL ++GLG++ S W ++ QL+ G L++ I Q
Sbjct: 444 NQRIREFGHDKLSVYGLGREQSHEHWVSVLRQLVHLGLLSQNIAQF--------SALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP + L L + + + ++SSA ++ G D +L+ L +
Sbjct: 496 EAARPVLRAELPLQLAVPRIQSLK----------VRSSANQKSYG-GNYDRKLFAKLRKL 544
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P T + L ++ GV Q + G + IR
Sbjct: 545 RKSIADEGNIPPYVVFNDTTLLEMAEQMPITASELLSVTGVGQRKLERFGAPFMAMIR 602
>gi|344199380|ref|YP_004783706.1| ATP-dependent DNA helicase RecQ [Acidithiobacillus ferrivorans SS3]
gi|343774824|gb|AEM47380.1| ATP-dependent DNA helicase RecQ [Acidithiobacillus ferrivorans SS3]
Length = 598
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 22/167 (13%)
Query: 11 KLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPP 70
+L ++G+GK+ S+N W+ L L+ G L E + + + +S S+RP
Sbjct: 448 QLTVYGIGKELSANAWRALFRHLLLRG-LVEVDAEGHGGLRLSP-------SSRP----- 494
Query: 71 LLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGT 130
L E + +HE+ + D + L+ D L+ L + R++LA G
Sbjct: 495 --LLRGEEKLTLRQHESTTPKQRDKRPEVALQ-------DADLWEALRQHRRELALAQGV 545
Query: 131 APYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
PY + D T+ ++ RP LA + G+ + +G+ L+ +
Sbjct: 546 PPYVIFHDATLMEMLQRRPRDLEGLATVPGIGARKLAAYGESFLKIL 592
>gi|85060315|ref|YP_456017.1| ATP-dependent DNA helicase RecQ [Sodalis glossinidius str.
'morsitans']
gi|84780835|dbj|BAE75612.1| ATP-dependent DNA helicase RecQ [Sodalis glossinidius str.
'morsitans']
Length = 625
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 22/182 (12%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
S+++ + D+L ++G+G++ S+ W +L QLI G +++ I Q
Sbjct: 456 SQRIRENAHDRLPVYGIGRERSNEHWISLLRQLIHLGLVSQNI--------TQHSVLQLT 507
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
SARP GE VD E V +LK+ + + G D L+ L +
Sbjct: 508 ESARP--------VLRGE-VDLMLAE---PRVTNLKTRSAPKTYG-GNYDRPLFAKLRKL 554
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR-H 179
RK LA PY + D T+ ++A P+ ++ ++GV + G L IR H
Sbjct: 555 RKALADEANVPPYVVFNDATLLEMAEQLPTDSGQMLRVNGVGNRKLERFGLPFLALIREH 614
Query: 180 LS 181
LS
Sbjct: 615 LS 616
>gi|390945503|ref|YP_006409263.1| ATP-dependent DNA helicase RecQ [Alistipes finegoldii DSM 17242]
gi|390422072|gb|AFL76578.1| ATP-dependent DNA helicase RecQ [Alistipes finegoldii DSM 17242]
Length = 730
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 80/163 (49%), Gaps = 17/163 (10%)
Query: 16 GLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTF 75
G G +H +++W + Q + G + + I++ Y +SV+++G+ ++ A P P+ +T
Sbjct: 458 GAGAEHDASFWGAVLRQALILGLVDKNIEN-YGLISVNRKGENFI--AMP---FPVTVTL 511
Query: 76 NGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYAL 135
+ + E + +G K A AD +L+ ML + RKK+A+ G P+ +
Sbjct: 512 DHNYDEEEREAEAVAPMG--KGGA---------ADEELFSMLKDLRKKVAKQHGLPPFVI 560
Query: 136 CGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
D +++ +A+ P T + NI GV G+ ++ I+
Sbjct: 561 FQDPSLEDMAVQYPITLEEMQNITGVGVGKARKFGEEFIKLIK 603
>gi|302039343|ref|YP_003799665.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii]
gi|300607407|emb|CBK43740.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii]
Length = 620
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 16 GLGKDHSSNWWKT----LAYQLISYGYL-TETIKDVYRTVSVSQQGKQYLGSARPDHQPP 70
G G H+ W KT L LI GYL E ++ Y T+ ++++G++ L P
Sbjct: 463 GYGGYHA--WSKTALTRLVKALIDAGYLQVEGLE--YPTLDLTRKGQESLKGI-----SP 513
Query: 71 LLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGT 130
LL++ E V+ I S + SS + + D QL+ L + R++LA G
Sbjct: 514 LLMS---EQVEDPAASAIKSKASERGSSMAPIHT--ASVDPQLFERLRQLRRELAEEEGV 568
Query: 131 APYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
AP+ + D+T++ IA +P T A L I G+ + V +G +L +
Sbjct: 569 APFVIFHDKTLRNIAGYKPVTLAALLEIPGIGEVKVERYGRRVLGVV 615
>gi|417684666|ref|ZP_12334002.1| ATP-dependent DNA helicase RecQ [Shigella boydii 3594-74]
gi|420327851|ref|ZP_14829589.1| ATP-dependent DNA helicase RecQ [Shigella flexneri CCH060]
gi|420355277|ref|ZP_14856349.1| ATP-dependent DNA helicase RecQ [Shigella boydii 4444-74]
gi|421684822|ref|ZP_16124603.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 1485-80]
gi|332088521|gb|EGI93637.1| ATP-dependent DNA helicase RecQ [Shigella boydii 3594-74]
gi|391245516|gb|EIQ04783.1| ATP-dependent DNA helicase RecQ [Shigella flexneri CCH060]
gi|391273146|gb|EIQ31974.1| ATP-dependent DNA helicase RecQ [Shigella boydii 4444-74]
gi|404335343|gb|EJZ61813.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 1485-80]
Length = 609
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMCKLERFGKPFMALIR 600
>gi|319900082|ref|YP_004159810.1| ATP-dependent DNA helicase RecQ [Bacteroides helcogenes P 36-108]
gi|319415113|gb|ADV42224.1| ATP-dependent DNA helicase RecQ [Bacteroides helcogenes P 36-108]
Length = 727
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 19/170 (11%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQP 69
++L + G G W + Q + GYL++ +++ Y + V+ +GK++L H
Sbjct: 452 EELEVFGSGMGEEDKTWNAVIRQALIAGYLSKDVEN-YGLLKVTDEGKKFL-----KHPK 505
Query: 70 PLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKLARVTG 129
+ + + + EE A G D LY ML + RKKL++
Sbjct: 506 SFKIVEDNDFEEVEEE-------------APARGGGACAVDPALYSMLKDLRKKLSKKLE 552
Query: 130 TAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRH 179
PY + D +++ +A P T L NI GV +G+ + I+
Sbjct: 553 VPPYVIFQDPSLEAMATIYPVTLDELQNIPGVGAGKAKRYGEEFCKLIKR 602
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,843,868,928
Number of Sequences: 23463169
Number of extensions: 281439397
Number of successful extensions: 584486
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 1182
Number of HSP's that attempted gapping in prelim test: 581300
Number of HSP's gapped (non-prelim): 2851
length of query: 430
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 285
effective length of database: 8,957,035,862
effective search space: 2552755220670
effective search space used: 2552755220670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 78 (34.7 bits)