BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044490
(430 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus GN=Wrn
PE=1 SV=3
Length = 1401
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 87/374 (23%), Positives = 149/374 (39%), Gaps = 69/374 (18%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETIKD--VYRTVSVSQQGKQYLGSARPDHQPPL 71
L G GK+ + +WWKTL++ LI+ G+L E K+ +T S++++G+++LG A P L
Sbjct: 968 LFGAGKEQAESWWKTLSHHLIAEGFLVEVPKENKYIKTCSLTKKGRKWLGEASSQSPPSL 1027
Query: 72 LLTFNGEMV--------------DAEEH-------------------------ETISSNV 92
LL N EM + +H E +SS
Sbjct: 1028 LLQANEEMFPRKVLLPSSNPVSPETTQHSSNQNPAGLTTKQSNLERTHSYKVPEKVSSGT 1087
Query: 93 GDLKSSATLENEGFSEADMQ-------------LYHMLLEERKKLARVTGTAPYALCGDQ 139
K SA + + G S + ++ LY L+E R+K A P L ++
Sbjct: 1088 NIPKKSAVMPSPGTSSSPLEPAISAQELDARTGLYARLVEARQKHANKMDVPPAILATNK 1147
Query: 140 TIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLD--GKVGEHTA 197
+ +A RP+T + IDGV++ LL+ I+H Q ++ D H
Sbjct: 1148 VLLDMAKMRPTTVENMKQIDGVSEGKAALLAP-LLEVIKHFCQVTSVQTDLLSSAKPHKE 1206
Query: 198 FTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVS 257
K + L + + ++ E + + IA R P+ + +L +AV
Sbjct: 1207 -QEKSQEMEKKDCSLPQSVAVTYTLFQEKKMPLHSIAE--NRLLPLTAAGM--HLAQAVK 1261
Query: 258 EGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD---KLKPIKNELPDDITYAHIKACL 314
G+ ++ R GLT E + I + I K+K I+ +P+++ I +
Sbjct: 1262 AGYPLDMER----AGLTPETWKIIMDVIRNPPINSDMYKVKLIRMLVPENLDTYLIHMAI 1317
Query: 315 VMENCGISPEVIPP 328
+ G PP
Sbjct: 1318 EILQSGSDSRTQPP 1331
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 104/417 (24%), Positives = 167/417 (40%), Gaps = 90/417 (21%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDV-YRTV-SVSQQGKQ 58
S++V D +F L GKD + +WK LA QLI+ GYL E+ + T+ ++ +G
Sbjct: 934 SQRVPD-RFRNHSLFSSGKDQTEAFWKVLARQLITEGYLQESSGQTKFSTICGLTSKGSN 992
Query: 59 YLGSARPDHQPPLLLTFNGEM--------------------------------------- 79
+L A + P LLL N E+
Sbjct: 993 WLIKANNEQCPSLLLPSNNELCLQRTRVSNFSSAQAHSSMVPHASSNTRSSMPKAGPEKM 1052
Query: 80 -----VDAEEHETISSNVGDLKSSATLENE-----------GFSEADMQ--LYHMLLEER 121
+E E +S G KSS L+ E ++Q LY L+ R
Sbjct: 1053 ELKDKFSYQEAERLSKAAGVSKSSFKLQTPCKLSRPPEPEVSPRERELQTTLYGRLVVAR 1112
Query: 122 KKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLS 181
+K+A P L ++ + +A RP+T + +DGV++ LL+ ++
Sbjct: 1113 QKIASERDILPAVLATNKVLVDMAKLRPTTSENMKKLDGVSEAKSAMLAP-LLEVVKEFC 1171
Query: 182 QKLNLSLD---GKV--GEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKIANY 236
+L +D G V E T FT + R L ++ ++ ++ E LS++KIA+
Sbjct: 1172 IANSLKVDVFSGSVSQSESTFFTPREQ----ERISLPESQRMSYSLFQEQNLSLKKIADV 1227
Query: 237 PGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKL-- 294
S + V +L +A+ G+ + R GLT E+ I AI K L
Sbjct: 1228 RCLSMAV----VGMHLWQALKAGYSFDVQR----AGLTPEMKKLITYAIKKPPINSDLSS 1279
Query: 295 -KPIKNELPDDITYAHIKACL-VMENCGIS-----PEVIPPSQKK-GNTDELPSKAS 343
K I+ +P +I I+ + ++E G S PE P+QK T+E P S
Sbjct: 1280 FKAIREYVPANIDGYPIRMVISLLEKEGSSGAQGQPEF--PTQKTLIQTEENPKNVS 1334
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 140/341 (41%), Gaps = 67/341 (19%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIK--DVYRTVSVSQQGKQ 58
S+++ D Q+ + L G GKD + +WWK + QLI+ G+L E + + +++++G+
Sbjct: 991 SQRLAD-QYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRN 1049
Query: 59 YLGSARPDHQPPLLLTFNGEMV--------------DAEEH------------------- 85
+L A + Q L+L N E+ +EH
Sbjct: 1050 WLHKANTESQ-SLILQANEELCPKKLLLPSSKTVSSGTKEHCYNQVPVELSTEKKSNLEK 1108
Query: 86 -------ETISSNVGDLKSSATLEN--EGFS-----------EADMQLYHMLLEERKKLA 125
+ ISS K S +++ + +S E + LY L+E R+K A
Sbjct: 1109 LYSYKPCDKISSGSNISKKSIMVQSPEKAYSSSQPVISAQEQETQIVLYGKLVEARQKHA 1168
Query: 126 RVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185
P L ++ + +A RP+T + IDGV++ LL+ I+H Q +
Sbjct: 1169 NKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAP-LLEVIKHFCQTNS 1227
Query: 186 LSLDGKVGEHTAFTRKLHVVV-NTRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIK 244
+ D +K +V N L+ + + ++ E + ++ IA R P+
Sbjct: 1228 VQTDLFSSTKPQEEQKTSLVAKNKICTLSQSMAITYSLFQEKKMPLKSIAE--SRILPL- 1284
Query: 245 EQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAI 285
T+ +L +AV G ++ R GLT E+ I + I
Sbjct: 1285 -MTIGMHLSQAVKAGCPLDLER----AGLTPEVQKIIADVI 1320
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 19/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+ D Q ++L ++G+GKD S W+++ QLI G++ + T+ +++ K
Sbjct: 457 NQKIKDNQHEQLSVYGIGKDKSKEHWQSVIRQLIHLGFIKQVFDHFNATLQLTENAK--- 513
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P+L GE + ISS L S + ++ D L+ L
Sbjct: 514 ---------PIL---RGEQPLSLAMPRISS----LTSVVAPQRYAIAQYDKDLFARLRFL 557
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A Y + D T++++A +P+TKA + I+GV
Sbjct: 558 RKQIADKENIPAYIVFNDATLQEMAQYQPTTKAEMLAINGV 598
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++K+++ Q KL ++G+GKD S W+++ QLI G++ + I ++ T+ +++ K L
Sbjct: 447 NQKIIERQHHKLSVYGIGKDKSKEHWQSVIRQLIHLGFVQQVISELNPTLQLTESAKVIL 506
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
P L + A IS K + + +G + D L+ L
Sbjct: 507 KGEEP-------LELAMPRISA-----IS------KIAHNPQRQGVANYDKDLFARLRFL 548
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGV 161
RK++A PY + D T++++A P++ + I+GV
Sbjct: 549 RKQIADKENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGV 589
>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12)
GN=recQ PE=1 SV=5
Length = 609
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G+D S W ++ QLI G +T+ I Q
Sbjct: 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP GE + + LK A ++ G D +L+ L +
Sbjct: 496 EAARP--------VLRGE----SSLQLAVPRIVALKPKAMQKSFG-GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A + PY + D T+ ++A P T + + +++GV + G + IR
Sbjct: 543 RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 600
>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=recQ PE=3 SV=3
Length = 609
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 73/178 (41%), Gaps = 21/178 (11%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
++++ D DKL ++G+G++ S W ++ QLI G + + I Q
Sbjct: 444 NQRIRDFGHDKLKVYGMGREKSHEHWVSVIRQLIHLGLVMQNI--------AQHSALQLT 495
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
+ARP + + L + A + + + G D +L+ L +
Sbjct: 496 DAARPVLRGDVPLKLAVPRIVALKPRVMQKSFG-------------GNYDRKLFAKLRKL 542
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK +A PY + D T+ ++A P + + + +++GV + G + IR
Sbjct: 543 RKAIADEENIPPYVVFNDATLIEMAEQMPVSASEMLSVNGVGMRKLERFGKEFMALIR 600
>sp|O34748|RECQ_BACSU Probable ATP-dependent DNA helicase RecQ OS=Bacillus subtilis
(strain 168) GN=recQ PE=3 SV=1
Length = 591
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 31/178 (17%)
Query: 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60
+KKV++ F L +G+ K S LIS ++ + + T+ VS +G+ L
Sbjct: 438 NKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMS-DGTFPTLFVSSKGRNVL 496
Query: 61 GSARPDHQPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEE 120
GE+ A + LK++A EN+ +L+ L
Sbjct: 497 ---------------KGELSVARKEA--------LKAAAITEND-------ELFERLRMV 526
Query: 121 RKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178
RK++A G P+ + DQT+K+++ +P L +I GV + +G LQ I+
Sbjct: 527 RKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDELLSIKGVGEQKRAKYGRLFLQEIQ 584
>sp|Q19546|WRN_CAEEL Probable Werner syndrome ATP-dependent helicase homolog 1
OS=Caenorhabditis elegans GN=wrn-1 PE=3 SV=2
Length = 1056
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 107/287 (37%), Gaps = 42/287 (14%)
Query: 14 LHGLGKDHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYL--GSARPDHQ 68
L G+GK WWK LA L GYL E +++S+ G+++L G
Sbjct: 681 LFGIGKHIPDKWWKALAASLRIAGYLGEVRLMQMKFGSCITLSELGERWLLTGKEMKIDA 740
Query: 69 PPLLLTFNGEMVDAEEHETISSNVGDLKSSATL-----------------ENE------- 104
P+LL E A +S KSS + ENE
Sbjct: 741 TPILLQGKKEKA-APSTVPGASRSQSTKSSTEIPTKILGANKIREYEPANENEQLMNLKK 799
Query: 105 ----GFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDG 160
G E QL L + R +A + AP+ + + + A RP++ + L IDG
Sbjct: 800 QEVTGLPEKIDQLRSRLDDIRVGIANMHEVAPFQIVSNTVLDCFANLRPTSASNLEMIDG 859
Query: 161 VNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAW 220
++ +G + + S++ ++ + + + +K+ +A
Sbjct: 860 MSAQQKSRYGKRFVDCVVQFSKETGIATNVNAND--------MIPPELISKMQKVLSDAV 911
Query: 221 KMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRL 267
+ + + L + A + I E TV YL AV +G ++ +L
Sbjct: 912 RRVYTEHLISRSTAKEVATARGISEGTVYSYLAMAVEKGLPLHLDKL 958
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana
GN=RECQL4B PE=2 SV=1
Length = 1150
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 8/176 (4%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIK--DVYRTVSVSQQGKQYLGSARPDH 67
D L LHG GK + + + + L++ L E +K ++Y +VS + + ++
Sbjct: 926 DTLHLHGAGKHLTKSEASRILHYLVTEDILAEGVKKSELYGSVSSLLKVNRSKAASLLSG 985
Query: 68 QPPLLLTFNGEMVDAEEHETISSNVGDLKSSATLENEGFSEADMQLYHMLLEERKKL-AR 126
+ + F + +++ ++ ++ TL + D L +LL K L
Sbjct: 986 GQSITMRFPSTIKVSKQSKSTANPAKVPLKQTTLPMAKAAPQDSNLSGILLTALKNLRTD 1045
Query: 127 VTGTAP-----YALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTI 177
+ +P Y + G+ T+K+I+ P TK L +I+G+ + V +GD LL+TI
Sbjct: 1046 IVKESPDLVMAYHIFGNATLKEISKRLPRTKEELLDINGLGKAKVSKYGDRLLETI 1101
>sp|Q5UPK1|YL120_MIMIV Putative ankyrin repeat protein L120 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_L120 PE=4 SV=1
Length = 339
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 161 VNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAW 220
+N L +T+ D+ + I H S LS+ K+ E+ A +HV + +L+ K+E +
Sbjct: 110 INLGLDVTYNDN--EAIVHASFFCKLSIITKLIEYGA---DIHVKNDLPLRLSVQKFEVF 164
Query: 221 KMWHEDGLSIQKIANYPGRSAP-IKEQTVVDYLLE 254
K + E+G I +Y R+A + V+ YL+E
Sbjct: 165 KFFVENGADIHVNNDYCIRAAAYLSNYDVMKYLIE 199
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 13/181 (7%)
Query: 10 DKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIK--DVYRTVSVSQQGKQYLGSARPDH 67
+ L HG GK S + + L++ L E ++ D+Y +VS Q +
Sbjct: 910 ETLQFHGAGKHLSKIEVSRILHYLVTEDILVEDVRKSDMYGSVSSLLQVNNAKATILFSG 969
Query: 68 QPPLLLTFNGEM-VDAEEHETISSNVGDL----KSSATLENEGFSEADMQL----YHMLL 118
+++ F + V + ++ G L +S+ L E D+ L Y L
Sbjct: 970 SQTIVMKFPSSVKVLKPSKQGATAAKGPLTSEKQSTLPLTTEDAPPKDVNLSANMYTALR 1029
Query: 119 EERKKLARVT--GTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQT 176
+ R L + G Y + + T+++I+ P TK L I+G+ + V +GD LL+T
Sbjct: 1030 KLRTALVKEAPDGVMAYHIFINSTLQQISRRIPRTKEELLEINGLGKAKVSKYGDQLLET 1089
Query: 177 I 177
I
Sbjct: 1090 I 1090
>sp|Q5WVL8|METN_LEGPL Methionine import ATP-binding protein MetN OS=Legionella
pneumophila (strain Lens) GN=metN PE=3 SV=1
Length = 341
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQ--HLVITHGDHLLQT 176
++R +AR +P L D+ AL +T A L+ + +N+ + I H +
Sbjct: 142 KQRVAIARALSCSPKVLLCDEATS--ALDPATTDAILSLLKKINELYGITIVLITHEMDV 199
Query: 177 IRHLSQKLNLSLDGKVGEHTAFT 199
++ + Q+L++ +DGK+ E TA +
Sbjct: 200 VKRICQRLSVMVDGKIVETTALS 222
>sp|Q5ZUG5|METN_LEGPH Methionine import ATP-binding protein MetN OS=Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1 /
ATCC 33152 / DSM 7513) GN=metN PE=3 SV=2
Length = 341
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQ--HLVITHGDHLLQT 176
++R +AR +P L D+ AL +T A L+ + +N+ + I H +
Sbjct: 142 KQRVAIARALSCSPKVLLCDEATS--ALDPATTDAILSLLKKINELYGITIVLITHEMDV 199
Query: 177 IRHLSQKLNLSLDGKVGEHTAFT 199
++ + Q+L++ +DGK+ E TA +
Sbjct: 200 VKRICQRLSVMVDGKIVETTALS 222
>sp|Q5X484|METN_LEGPA Methionine import ATP-binding protein MetN OS=Legionella
pneumophila (strain Paris) GN=metN PE=3 SV=1
Length = 341
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 119 EERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQ--HLVITHGDHLLQT 176
++R +AR +P L D+ AL +T A L+ + +N+ + I H +
Sbjct: 142 KQRVAIARALSCSPKVLLCDEATS--ALDPATTDAILSLLKKINELYGITIVLITHEMDV 199
Query: 177 IRHLSQKLNLSLDGKVGEHTAFT 199
++ + Q+L++ +DGK+ E TA +
Sbjct: 200 VKRICQRLSVMVDGKIVETTALS 222
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 15 HGLGKDHSSNWWKTLAYQLISYGYL----TETIKDVYRTVSVSQQGKQYLGSA 63
+GLG HSS WWK + LI G+L +T K + V V+ +G ++ A
Sbjct: 472 YGLGSKHSSEWWKEVFDNLIKQGFLQSVSLKTGKFPIQVVKVTNKGVTWVSMA 524
>sp|Q9C5P1|SUVH7_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH7
OS=Arabidopsis thaliana GN=SUVH7 PE=2 SV=1
Length = 693
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 5/146 (3%)
Query: 174 LQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHEDGLSIQKI 233
L TIR N S D G T ++ TP + + K++ + L +
Sbjct: 103 LITIRPSDDSSNYSCDAGAGPSTGPVKRGRGRPKGSKNSTPTEPKKPKVYDPNSLKVTSR 162
Query: 234 ANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDK 293
N+ + +T ++++V FD RLC ++ ++I + +K+G K
Sbjct: 163 GNFDSEITEAETETGNQEIVDSVMMRFDAVRRRLC-QINHPEDILTTASGNCTKMGVKTN 221
Query: 294 LKPIKNELP----DDITYAHIKACLV 315
+ +P DI Y + CLV
Sbjct: 222 TRRRIGAVPGIHVGDIFYYWGEMCLV 247
>sp|Q9Y2L8|ZKSC5_HUMAN Zinc finger protein with KRAB and SCAN domains 5 OS=Homo sapiens
GN=ZKSCAN5 PE=1 SV=1
Length = 839
Score = 32.3 bits (72), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 328 PSQKKGNTDELPSKASETWHAEEPHEVEECGKSMV 362
PS K+ N E+P ++ E PH+ ECGKS +
Sbjct: 525 PSSKRMNYSEVPYVHKKSSTGERPHKCNECGKSFI 559
>sp|A2T7D2|ZKSC5_PANTR Zinc finger protein with KRAB and SCAN domains 5 OS=Pan troglodytes
GN=ZKSCAN5 PE=3 SV=1
Length = 839
Score = 32.3 bits (72), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 328 PSQKKGNTDELPSKASETWHAEEPHEVEECGKSMV 362
PS K+ N E+P ++ E PH+ ECGKS +
Sbjct: 525 PSSKRMNYSEVPYVHKKSSTGERPHKCNECGKSFI 559
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,796,533
Number of Sequences: 539616
Number of extensions: 6863677
Number of successful extensions: 15326
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 15297
Number of HSP's gapped (non-prelim): 39
length of query: 430
length of database: 191,569,459
effective HSP length: 120
effective length of query: 310
effective length of database: 126,815,539
effective search space: 39312817090
effective search space used: 39312817090
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)