Query 044490
Match_columns 430
No_of_seqs 195 out of 1512
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 05:59:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e1f_A Werner syndrome ATP-dep 99.8 2.2E-19 7.5E-24 150.7 9.4 86 108-194 12-97 (103)
2 2kv2_A Bloom syndrome protein; 99.8 5.2E-19 1.8E-23 143.4 8.7 77 108-184 4-80 (85)
3 2rrd_A BLM HRDC domain, HRDC d 99.8 8.2E-19 2.8E-23 146.7 8.7 78 107-184 18-95 (101)
4 2rhf_A DNA helicase RECQ; HRDC 99.8 1.1E-18 3.9E-23 138.7 8.8 73 110-182 4-76 (77)
5 2dgz_A Werner syndrome protein 99.8 4.9E-19 1.7E-23 150.9 7.1 87 108-195 19-105 (113)
6 1wud_A ATP-dependent DNA helic 99.8 8E-19 2.7E-23 143.5 7.5 76 110-185 12-87 (89)
7 3iuo_A ATP-dependent DNA helic 99.7 3E-18 1E-22 148.1 9.6 102 212-320 18-119 (122)
8 3aaf_A Werner syndrome ATP-dep 99.4 1.8E-13 6.1E-18 120.0 6.3 79 1-82 46-127 (134)
9 3saf_A Exosome component 10; e 99.2 1.2E-11 4.2E-16 127.6 7.9 76 105-180 323-398 (428)
10 2hbj_A Exosome complex exonucl 99.2 2.3E-11 8E-16 125.0 7.5 74 109-182 311-384 (410)
11 1yt3_A Ribonuclease D, RNAse D 99.1 9.5E-11 3.2E-15 118.9 9.9 76 106-182 209-284 (375)
12 3cym_A Uncharacterized protein 98.8 9.6E-10 3.3E-14 113.9 3.6 76 107-182 230-324 (440)
13 1oyw_A RECQ helicase, ATP-depe 98.4 2E-07 6.9E-12 98.2 7.3 65 1-66 444-508 (523)
14 1d8b_A SGS1 RECQ helicase; fiv 98.4 1.1E-06 3.9E-11 69.2 7.8 73 110-183 5-77 (81)
15 2v1x_A ATP-dependent DNA helic 97.6 8E-05 2.7E-09 79.7 6.9 59 1-66 477-539 (591)
16 3ulq_B Transcriptional regulat 93.9 0.045 1.6E-06 43.8 3.9 46 209-259 27-72 (90)
17 1je8_A Nitrate/nitrite respons 93.4 0.051 1.8E-06 42.4 3.4 48 208-260 18-65 (82)
18 2jpc_A SSRB; DNA binding prote 93.3 0.078 2.7E-06 38.3 4.0 38 217-259 4-41 (61)
19 3cym_A Uncharacterized protein 93.1 0.12 4E-06 53.2 6.3 71 110-180 362-435 (440)
20 1k78_A Paired box protein PAX5 93.0 0.52 1.8E-05 40.2 9.5 93 217-315 39-140 (149)
21 2rnj_A Response regulator prot 92.9 0.068 2.3E-06 42.4 3.4 47 209-260 27-73 (91)
22 3c57_A Two component transcrip 92.8 0.086 2.9E-06 42.3 3.9 46 209-259 25-70 (95)
23 1p4w_A RCSB; solution structur 92.8 0.089 3E-06 42.9 3.9 46 209-259 32-77 (99)
24 1fse_A GERE; helix-turn-helix 92.7 0.089 3.1E-06 39.3 3.6 44 210-258 10-53 (74)
25 1x3u_A Transcriptional regulat 91.9 0.11 3.9E-06 39.4 3.4 45 211-260 16-60 (79)
26 1tc3_C Protein (TC3 transposas 91.7 0.084 2.9E-06 35.7 2.2 37 218-259 13-49 (51)
27 1pdn_C Protein (PRD paired); p 91.2 0.32 1.1E-05 39.7 5.7 92 217-314 24-124 (128)
28 3hug_A RNA polymerase sigma fa 90.1 0.25 8.7E-06 39.0 3.9 44 210-257 36-79 (92)
29 2p7v_B Sigma-70, RNA polymeras 89.9 0.25 8.6E-06 36.7 3.6 45 211-259 5-53 (68)
30 1yt3_A Ribonuclease D, RNAse D 89.8 0.2 6.8E-06 50.1 3.7 70 109-178 302-371 (375)
31 2k27_A Paired box protein PAX- 89.0 0.93 3.2E-05 39.1 7.1 97 217-319 32-137 (159)
32 1xsv_A Hypothetical UPF0122 pr 88.9 0.42 1.4E-05 39.6 4.6 45 211-259 25-69 (113)
33 2o8x_A Probable RNA polymerase 88.9 0.41 1.4E-05 35.1 4.0 45 210-258 14-58 (70)
34 1ku3_A Sigma factor SIGA; heli 88.4 0.44 1.5E-05 35.8 4.0 45 210-258 9-57 (73)
35 1u78_A TC3 transposase, transp 88.4 2.3 7.9E-05 35.2 9.0 93 217-321 13-105 (141)
36 1s7o_A Hypothetical UPF0122 pr 87.8 0.45 1.5E-05 39.5 4.0 44 211-258 22-65 (113)
37 1oyi_A Double-stranded RNA-bin 87.1 0.29 9.7E-06 38.7 2.2 44 213-260 16-59 (82)
38 3szt_A QCSR, quorum-sensing co 86.8 0.53 1.8E-05 43.8 4.4 45 210-259 174-218 (237)
39 2x48_A CAG38821; archeal virus 86.6 0.3 1E-05 34.5 1.9 33 216-253 21-53 (55)
40 1jko_C HIN recombinase, DNA-in 86.5 0.83 2.9E-05 31.0 4.2 33 217-254 12-44 (52)
41 1tty_A Sigma-A, RNA polymerase 86.2 0.66 2.2E-05 36.2 4.0 46 210-259 17-66 (87)
42 1p4x_A Staphylococcal accessor 86.1 11 0.00037 35.4 13.2 29 228-260 175-203 (250)
43 2q0o_A Probable transcriptiona 85.6 0.61 2.1E-05 43.1 4.1 44 210-258 174-217 (236)
44 3clo_A Transcriptional regulat 85.3 0.61 2.1E-05 43.8 4.0 46 210-260 196-241 (258)
45 1l3l_A Transcriptional activat 84.0 0.63 2.1E-05 43.0 3.4 44 210-258 172-215 (234)
46 1r7j_A Conserved hypothetical 83.8 1.2 4.2E-05 35.7 4.6 39 20-62 31-69 (95)
47 2heo_A Z-DNA binding protein 1 83.7 0.82 2.8E-05 34.2 3.3 45 212-260 8-54 (67)
48 3qp6_A CVIR transcriptional re 83.3 0.82 2.8E-05 43.4 3.9 44 211-259 197-240 (265)
49 3mzy_A RNA polymerase sigma-H 83.2 0.75 2.6E-05 38.9 3.3 42 211-257 109-150 (164)
50 1tbx_A ORF F-93, hypothetical 82.7 1.6 5.4E-05 34.4 4.8 43 20-62 37-79 (99)
51 2lfw_A PHYR sigma-like domain; 82.3 0.77 2.6E-05 39.6 3.0 46 209-258 91-136 (157)
52 1or7_A Sigma-24, RNA polymeras 79.6 1.8 6E-05 37.9 4.5 44 210-257 139-182 (194)
53 2q1z_A RPOE, ECF SIGE; ECF sig 78.8 1.5 5.2E-05 38.0 3.8 44 210-257 134-177 (184)
54 3f6v_A Possible transcriptiona 78.2 2.9 9.8E-05 36.3 5.4 84 214-303 58-143 (151)
55 3t72_q RNA polymerase sigma fa 77.6 2.2 7.6E-05 34.5 4.1 44 212-259 20-67 (99)
56 2qvo_A Uncharacterized protein 76.4 3.2 0.00011 32.5 4.7 43 20-62 41-83 (95)
57 3b73_A PHIH1 repressor-like pr 76.4 3.2 0.00011 34.3 4.9 43 20-65 40-82 (111)
58 1y0u_A Arsenical resistance op 76.2 2.4 8.3E-05 33.3 4.0 41 215-260 32-72 (96)
59 3f6o_A Probable transcriptiona 75.9 3 0.0001 34.1 4.6 68 214-286 18-87 (118)
60 2pg4_A Uncharacterized protein 75.7 2.4 8.2E-05 33.2 3.8 43 20-62 41-85 (95)
61 1a04_A Nitrate/nitrite respons 75.2 2.1 7.3E-05 37.8 3.8 44 211-259 154-197 (215)
62 1r1u_A CZRA, repressor protein 74.4 2.8 9.5E-05 33.6 3.9 42 215-260 27-68 (106)
63 2fu4_A Ferric uptake regulatio 74.0 2.2 7.5E-05 32.5 3.1 45 212-260 15-67 (83)
64 3c3w_A Two component transcrip 73.6 2.5 8.7E-05 38.0 3.9 44 211-259 149-192 (225)
65 3pqk_A Biofilm growth-associat 73.5 2.8 9.7E-05 33.2 3.7 42 215-260 24-65 (102)
66 3jth_A Transcription activator 73.1 1.5 5.1E-05 34.5 2.0 68 215-287 24-93 (98)
67 1qgp_A Protein (double strande 72.9 1.9 6.7E-05 33.1 2.5 40 217-260 17-60 (77)
68 2jt1_A PEFI protein; solution 72.9 3.4 0.00011 32.0 3.8 40 217-260 7-53 (77)
69 3oop_A LIN2960 protein; protei 72.6 4.6 0.00016 33.4 5.1 43 20-62 62-107 (143)
70 4aik_A Transcriptional regulat 72.6 5.3 0.00018 34.0 5.5 43 20-62 57-102 (151)
71 3eco_A MEPR; mutlidrug efflux 72.5 4.5 0.00015 33.2 4.9 43 20-62 58-103 (139)
72 2oqg_A Possible transcriptiona 72.5 4.3 0.00015 32.4 4.7 40 217-260 24-63 (114)
73 3r0a_A Putative transcriptiona 72.3 3.2 0.00011 34.4 3.9 46 211-260 23-71 (123)
74 1rp3_A RNA polymerase sigma fa 72.1 3.8 0.00013 36.8 4.7 45 209-257 185-229 (239)
75 1ku9_A Hypothetical protein MJ 71.7 7.6 0.00026 31.9 6.2 43 214-260 26-70 (152)
76 4b8x_A SCO5413, possible MARR- 71.5 4.6 0.00016 34.2 4.8 43 20-62 62-107 (147)
77 1qbj_A Protein (double-strande 71.3 3.2 0.00011 32.3 3.5 41 216-260 12-56 (81)
78 3b73_A PHIH1 repressor-like pr 71.2 6.9 0.00024 32.3 5.7 45 212-260 11-58 (111)
79 1jgs_A Multiple antibiotic res 71.1 5.4 0.00019 32.6 5.1 43 20-62 59-104 (138)
80 2kp7_A Crossover junction endo 70.3 20 0.00069 28.2 8.0 66 113-185 18-86 (87)
81 3hsr_A HTH-type transcriptiona 70.3 4.9 0.00017 33.3 4.7 43 20-62 61-106 (140)
82 3klo_A Transcriptional regulat 70.2 2.9 0.0001 37.4 3.5 45 210-259 158-202 (225)
83 2frh_A SARA, staphylococcal ac 69.9 3.8 0.00013 33.8 3.9 43 20-62 64-109 (127)
84 1sfx_A Conserved hypothetical 69.5 4.8 0.00016 31.3 4.2 44 213-260 19-63 (109)
85 3bro_A Transcriptional regulat 68.3 6.1 0.00021 32.3 4.9 43 20-62 61-106 (141)
86 3deu_A Transcriptional regulat 68.1 6.2 0.00021 34.0 5.0 43 20-62 79-124 (166)
87 3e6m_A MARR family transcripti 67.9 6.2 0.00021 33.5 4.9 43 20-62 78-123 (161)
88 2fbh_A Transcriptional regulat 67.8 7.7 0.00026 31.8 5.4 43 20-62 63-108 (146)
89 1yio_A Response regulatory pro 67.8 3.5 0.00012 36.1 3.4 44 211-259 142-185 (208)
90 2qww_A Transcriptional regulat 67.7 5.9 0.0002 33.1 4.7 44 20-63 66-114 (154)
91 2pex_A Transcriptional regulat 67.6 6.9 0.00024 32.7 5.1 44 20-63 72-118 (153)
92 3s2w_A Transcriptional regulat 67.4 6.4 0.00022 33.3 4.9 43 20-62 75-120 (159)
93 2hr3_A Probable transcriptiona 67.3 6.6 0.00022 32.5 4.9 43 20-62 61-106 (147)
94 3g3z_A NMB1585, transcriptiona 67.1 5.9 0.0002 32.8 4.5 43 20-62 56-101 (145)
95 3bj6_A Transcriptional regulat 67.0 7.2 0.00025 32.4 5.1 43 20-62 65-110 (152)
96 4hbl_A Transcriptional regulat 66.5 5.4 0.00018 33.4 4.2 43 20-62 66-111 (149)
97 1ub9_A Hypothetical protein PH 66.5 8.1 0.00028 29.7 5.0 43 20-62 41-86 (100)
98 2d1h_A ST1889, 109AA long hypo 66.2 4 0.00014 31.8 3.1 45 212-260 19-65 (109)
99 1q1h_A TFE, transcription fact 65.6 6.6 0.00023 31.4 4.4 33 227-264 33-65 (110)
100 3cuo_A Uncharacterized HTH-typ 65.5 3.4 0.00012 32.0 2.6 40 217-260 27-67 (99)
101 2obp_A Putative DNA-binding pr 64.7 9.6 0.00033 30.7 5.1 43 20-62 47-90 (96)
102 2hzt_A Putative HTH-type trans 64.6 11 0.00036 30.2 5.5 42 20-61 39-83 (107)
103 2rdp_A Putative transcriptiona 64.6 7.8 0.00027 32.1 4.8 43 20-62 67-112 (150)
104 3bdd_A Regulatory protein MARR 64.5 9.1 0.00031 31.2 5.2 43 20-62 56-102 (142)
105 3cdh_A Transcriptional regulat 63.9 6.9 0.00024 32.8 4.4 43 20-62 68-113 (155)
106 2fbi_A Probable transcriptiona 63.9 7.1 0.00024 31.9 4.4 43 20-62 61-106 (142)
107 2nyx_A Probable transcriptiona 63.8 8.6 0.00029 32.9 5.1 43 20-62 70-115 (168)
108 2gxg_A 146AA long hypothetical 63.7 9.1 0.00031 31.4 5.1 43 20-62 61-106 (146)
109 1lj9_A Transcriptional regulat 63.6 9.2 0.00032 31.4 5.1 43 20-62 54-99 (144)
110 2kko_A Possible transcriptiona 63.6 2.9 9.9E-05 33.8 1.8 65 218-287 29-95 (108)
111 1u2w_A CADC repressor, cadmium 63.5 4.2 0.00014 33.6 2.9 42 215-260 43-85 (122)
112 3f3x_A Transcriptional regulat 63.5 7.2 0.00024 32.2 4.4 43 20-62 61-106 (144)
113 3k0l_A Repressor protein; heli 63.3 5.8 0.0002 33.7 3.8 43 20-62 71-116 (162)
114 1ub9_A Hypothetical protein PH 62.7 5.9 0.0002 30.6 3.5 42 215-260 17-59 (100)
115 1on2_A Transcriptional regulat 62.5 9.1 0.00031 31.8 4.9 40 20-62 33-72 (142)
116 3cjn_A Transcriptional regulat 62.5 9.7 0.00033 32.1 5.1 43 20-62 77-122 (162)
117 1s3j_A YUSO protein; structura 62.4 9.6 0.00033 31.7 5.0 43 20-62 62-107 (155)
118 1bja_A Transcription regulator 62.3 5.8 0.0002 32.0 3.3 51 9-63 30-81 (95)
119 3nqo_A MARR-family transcripti 62.2 9.2 0.00032 33.6 5.1 43 20-62 68-113 (189)
120 3bpv_A Transcriptional regulat 62.2 7.8 0.00027 31.5 4.3 43 20-62 54-99 (138)
121 2eth_A Transcriptional regulat 62.1 9.9 0.00034 31.8 5.1 43 20-62 69-114 (154)
122 2a61_A Transcriptional regulat 62.0 7.9 0.00027 31.8 4.4 43 20-62 58-103 (145)
123 1z91_A Organic hydroperoxide r 62.0 8 0.00027 31.9 4.4 44 20-63 65-111 (147)
124 2nnn_A Probable transcriptiona 61.9 8 0.00028 31.5 4.3 43 20-62 63-108 (140)
125 2lkp_A Transcriptional regulat 61.4 7.7 0.00026 31.4 4.1 42 215-260 33-74 (119)
126 2htj_A P fimbrial regulatory p 61.3 8.2 0.00028 29.2 4.0 31 226-260 13-43 (81)
127 1okr_A MECI, methicillin resis 61.2 9 0.00031 30.9 4.5 43 20-62 39-82 (123)
128 3tgn_A ADC operon repressor AD 61.1 6.9 0.00023 32.3 3.8 46 211-260 35-80 (146)
129 1r1t_A Transcriptional repress 61.0 5.7 0.00019 32.9 3.2 42 215-260 47-88 (122)
130 1z7u_A Hypothetical protein EF 60.4 11 0.00038 30.4 4.9 42 20-61 47-91 (112)
131 1uxc_A FRUR (1-57), fructose r 60.4 8.5 0.00029 28.5 3.8 47 228-290 1-47 (65)
132 4ich_A Transcriptional regulat 59.7 3.9 0.00013 38.7 2.3 32 218-253 128-162 (311)
133 3hrs_A Metalloregulator SCAR; 59.5 10 0.00034 34.5 4.9 40 20-62 31-70 (214)
134 2w7n_A TRFB transcriptional re 59.1 12 0.0004 30.5 4.7 61 217-283 24-88 (101)
135 3kp7_A Transcriptional regulat 58.5 29 0.00099 28.7 7.4 93 213-316 37-136 (151)
136 2jsc_A Transcriptional regulat 58.3 4.8 0.00016 33.0 2.3 43 214-260 21-63 (118)
137 3nrv_A Putative transcriptiona 58.2 7.6 0.00026 32.2 3.6 43 20-62 65-110 (148)
138 2l8n_A Transcriptional repress 58.2 12 0.0004 27.9 4.2 45 227-290 9-53 (67)
139 2pn6_A ST1022, 150AA long hypo 58.1 7.4 0.00025 32.8 3.6 42 215-260 4-46 (150)
140 2fsw_A PG_0823 protein; alpha- 57.7 13 0.00046 29.5 4.9 42 20-61 50-94 (107)
141 3ech_A MEXR, multidrug resista 57.3 4.9 0.00017 33.3 2.2 43 20-62 62-107 (142)
142 3df8_A Possible HXLR family tr 57.3 15 0.0005 29.7 5.1 41 20-61 54-94 (111)
143 1xmk_A Double-stranded RNA-spe 57.1 11 0.00037 29.3 4.0 41 20-61 36-77 (79)
144 3fm5_A Transcriptional regulat 57.0 6.9 0.00024 32.6 3.1 43 20-62 65-110 (150)
145 3bja_A Transcriptional regulat 56.8 7.3 0.00025 31.7 3.2 43 20-62 58-103 (139)
146 2gxg_A 146AA long hypothetical 56.5 35 0.0012 27.7 7.5 45 212-260 35-79 (146)
147 2gmg_A Hypothetical protein PF 56.4 7.6 0.00026 31.9 3.1 39 217-259 14-56 (105)
148 2co5_A Viral protein F93; vira 56.4 15 0.00051 29.5 4.9 44 20-63 41-84 (99)
149 3u2r_A Regulatory protein MARR 56.3 6 0.0002 33.9 2.7 43 20-62 73-118 (168)
150 3tgn_A ADC operon repressor AD 56.2 10 0.00035 31.2 4.0 43 20-62 62-107 (146)
151 2w25_A Probable transcriptiona 56.1 11 0.00037 31.9 4.3 45 212-260 5-50 (150)
152 4a5n_A Uncharacterized HTH-typ 55.8 17 0.0006 30.6 5.5 43 19-61 50-95 (131)
153 2x4h_A Hypothetical protein SS 55.8 14 0.00048 30.4 4.8 38 20-61 42-79 (139)
154 1l0o_C Sigma factor; bergerat 55.0 2.5 8.7E-05 37.9 0.0 44 210-257 197-240 (243)
155 2bv6_A MGRA, HTH-type transcri 54.8 9.2 0.00031 31.4 3.5 44 20-63 62-108 (142)
156 3cuo_A Uncharacterized HTH-typ 54.0 22 0.00076 27.1 5.5 42 20-61 49-90 (99)
157 2fq4_A Transcriptional regulat 53.3 5.7 0.00019 34.2 2.0 31 218-252 20-53 (192)
158 2qq9_A Diphtheria toxin repres 53.2 13 0.00044 34.0 4.6 40 20-62 35-74 (226)
159 2fa5_A Transcriptional regulat 53.2 9.8 0.00034 32.0 3.5 43 20-62 74-119 (162)
160 3bro_A Transcriptional regulat 53.1 42 0.0014 27.0 7.4 30 227-260 50-79 (141)
161 2elh_A CG11849-PA, LD40883P; s 53.1 9.4 0.00032 29.5 3.1 36 217-257 29-64 (87)
162 3g3z_A NMB1585, transcriptiona 52.8 35 0.0012 27.9 6.9 43 214-260 31-74 (145)
163 3jw4_A Transcriptional regulat 52.5 4.7 0.00016 33.7 1.3 43 20-62 68-113 (148)
164 2zkz_A Transcriptional repress 52.3 8.2 0.00028 30.5 2.7 41 214-258 27-68 (99)
165 2cfx_A HTH-type transcriptiona 52.0 14 0.00049 31.0 4.3 44 213-260 4-48 (144)
166 2fxa_A Protease production reg 51.4 14 0.00048 33.2 4.4 44 20-63 73-119 (207)
167 2p4w_A Transcriptional regulat 50.9 9.4 0.00032 34.7 3.2 42 215-260 16-57 (202)
168 1yyv_A Putative transcriptiona 50.7 18 0.00061 30.2 4.7 42 20-61 60-104 (131)
169 3f1b_A TETR-like transcription 50.6 8.6 0.00029 32.8 2.7 31 218-252 22-55 (203)
170 1lj9_A Transcriptional regulat 50.3 27 0.00092 28.4 5.8 43 214-260 29-72 (144)
171 4fx0_A Probable transcriptiona 50.1 9.4 0.00032 32.3 2.9 43 20-62 63-107 (148)
172 1uly_A Hypothetical protein PH 50.0 10 0.00035 34.0 3.3 43 214-260 20-62 (192)
173 2cyy_A Putative HTH-type trans 50.0 15 0.00051 31.1 4.2 45 212-260 5-50 (151)
174 3u1d_A Uncharacterized protein 49.7 9.3 0.00032 33.4 2.8 44 215-263 30-77 (151)
175 3n0r_A Response regulator; sig 49.6 16 0.00054 34.6 4.7 75 210-290 110-185 (286)
176 2f2e_A PA1607; transcription f 49.3 21 0.0007 30.3 4.9 41 20-60 48-90 (146)
177 2ia0_A Putative HTH-type trans 49.2 16 0.00056 31.9 4.4 45 212-260 15-60 (171)
178 3iyd_F RNA polymerase sigma fa 49.0 14 0.00047 39.3 4.5 47 209-259 548-598 (613)
179 1tbx_A ORF F-93, hypothetical 48.7 26 0.00089 27.0 5.1 45 212-260 6-55 (99)
180 2wte_A CSA3; antiviral protein 48.4 15 0.00051 34.3 4.2 46 211-260 149-195 (244)
181 1jgs_A Multiple antibiotic res 48.4 34 0.0012 27.6 6.0 44 213-260 33-77 (138)
182 2rdp_A Putative transcriptiona 48.4 36 0.0012 27.9 6.3 45 212-260 40-85 (150)
183 2dbb_A Putative HTH-type trans 48.3 20 0.0007 30.1 4.8 45 212-260 7-52 (151)
184 2cg4_A Regulatory protein ASNC 48.3 16 0.00056 30.8 4.1 45 212-260 6-51 (152)
185 2h09_A Transcriptional regulat 48.0 21 0.00073 30.0 4.9 40 20-62 65-104 (155)
186 3l7w_A Putative uncharacterize 47.6 21 0.00072 28.6 4.5 44 20-63 37-84 (108)
187 1fx7_A Iron-dependent represso 47.6 17 0.00059 33.1 4.5 40 20-62 35-74 (230)
188 3k0l_A Repressor protein; heli 47.3 43 0.0015 28.1 6.7 93 213-316 45-143 (162)
189 2gen_A Probable transcriptiona 47.1 8.2 0.00028 33.4 2.0 31 218-252 15-48 (197)
190 4dyq_A Gene 1 protein; GP1, oc 46.9 30 0.001 29.2 5.6 33 217-254 19-52 (140)
191 2a61_A Transcriptional regulat 46.9 36 0.0012 27.6 6.0 45 212-260 31-76 (145)
192 3boq_A Transcriptional regulat 46.9 7.9 0.00027 32.5 1.9 43 20-62 73-118 (160)
193 2zcm_A Biofilm operon icaabcd 46.8 12 0.00041 31.9 3.1 32 217-252 14-48 (192)
194 1mzb_A Ferric uptake regulatio 46.8 14 0.00049 30.9 3.4 49 212-260 16-68 (136)
195 2hr3_A Probable transcriptiona 46.7 47 0.0016 27.0 6.8 44 213-260 34-79 (147)
196 2nnn_A Probable transcriptiona 46.6 25 0.00086 28.3 4.9 47 212-263 36-83 (140)
197 2eh3_A Transcriptional regulat 46.5 9.4 0.00032 32.3 2.3 31 218-252 10-43 (179)
198 3cdh_A Transcriptional regulat 46.4 57 0.002 26.8 7.3 101 213-321 42-148 (155)
199 2jn6_A Protein CGL2762, transp 46.3 8 0.00027 30.2 1.7 40 217-260 12-52 (97)
200 2q24_A Putative TETR family tr 46.1 12 0.00042 31.9 3.1 31 218-252 23-55 (194)
201 1p2f_A Response regulator; DRR 45.7 10 0.00035 33.4 2.5 45 210-259 144-195 (220)
202 3kp7_A Transcriptional regulat 45.7 9.4 0.00032 31.8 2.2 43 20-62 62-109 (151)
203 2hyt_A TETR-family transcripti 45.7 9.2 0.00031 33.0 2.2 32 218-253 20-54 (197)
204 2p5v_A Transcriptional regulat 45.4 21 0.00071 30.5 4.4 45 212-260 8-53 (162)
205 1i1g_A Transcriptional regulat 45.3 20 0.00068 29.6 4.1 42 215-260 5-47 (141)
206 3f3x_A Transcriptional regulat 45.2 53 0.0018 26.7 6.8 45 212-260 35-79 (144)
207 3bpv_A Transcriptional regulat 45.1 21 0.00071 28.8 4.2 45 212-260 27-72 (138)
208 2oqg_A Possible transcriptiona 45.1 30 0.001 27.2 5.1 42 20-61 45-86 (114)
209 4hbl_A Transcriptional regulat 45.0 35 0.0012 28.1 5.7 35 222-260 50-84 (149)
210 3s2w_A Transcriptional regulat 44.7 36 0.0012 28.4 5.8 35 222-260 59-93 (159)
211 2wui_A MEXZ, transcriptional r 44.7 10 0.00036 33.0 2.4 31 218-252 19-52 (210)
212 3bdd_A Regulatory protein MARR 44.6 22 0.00074 28.8 4.2 44 213-260 30-74 (142)
213 3e6m_A MARR family transcripti 44.4 46 0.0016 27.8 6.5 34 223-260 63-96 (161)
214 3vib_A MTRR; helix-turn-helix 44.4 9.5 0.00032 33.1 2.0 31 218-252 18-51 (210)
215 3bja_A Transcriptional regulat 44.2 36 0.0012 27.3 5.6 45 212-260 31-76 (139)
216 3vpr_A Transcriptional regulat 44.2 11 0.00039 32.0 2.5 31 218-252 11-44 (190)
217 3bj6_A Transcriptional regulat 44.2 36 0.0012 27.9 5.7 45 212-260 38-83 (152)
218 2d6y_A Putative TETR family re 44.1 11 0.00039 32.7 2.5 32 218-253 16-50 (202)
219 3ech_A MEXR, multidrug resista 44.1 53 0.0018 26.6 6.7 45 212-260 35-80 (142)
220 3bqz_B HTH-type transcriptiona 44.0 14 0.00048 31.2 3.0 32 218-253 10-44 (194)
221 2rae_A Transcriptional regulat 43.9 12 0.00043 32.0 2.7 33 217-253 24-59 (207)
222 2fbk_A Transcriptional regulat 43.8 36 0.0012 29.2 5.8 43 214-260 69-115 (181)
223 3lwj_A Putative TETR-family tr 43.5 10 0.00035 32.4 2.1 31 218-252 20-53 (202)
224 2qww_A Transcriptional regulat 43.4 42 0.0014 27.6 5.9 47 212-263 39-86 (154)
225 4g6q_A Putative uncharacterize 43.3 11 0.00039 33.4 2.4 44 213-260 22-66 (182)
226 3k2z_A LEXA repressor; winged 43.3 21 0.00071 31.7 4.2 45 212-260 3-53 (196)
227 2f07_A YVDT; helix-turn-helix, 43.3 10 0.00035 32.8 2.0 31 218-252 18-51 (197)
228 1vi0_A Transcriptional regulat 43.2 10 0.00035 33.1 2.1 31 218-252 16-49 (206)
229 3oop_A LIN2960 protein; protei 43.2 31 0.0011 28.1 5.0 45 212-260 35-80 (143)
230 1sfx_A Conserved hypothetical 42.9 33 0.0011 26.2 4.9 43 20-62 45-89 (109)
231 2fe3_A Peroxide operon regulat 42.9 24 0.00084 29.8 4.4 49 212-260 20-71 (145)
232 2p8t_A Hypothetical protein PH 42.8 22 0.00074 32.5 4.2 40 20-63 41-80 (200)
233 1pb6_A Hypothetical transcript 42.3 15 0.00053 31.4 3.1 31 218-252 26-59 (212)
234 1p6r_A Penicillinase repressor 42.3 16 0.00056 27.4 2.8 50 211-260 6-56 (82)
235 3bru_A Regulatory protein, TET 42.2 13 0.00046 32.2 2.7 32 217-252 37-71 (222)
236 3eco_A MEPR; mutlidrug efflux 42.2 19 0.00064 29.3 3.5 45 212-260 29-76 (139)
237 2dg7_A Putative transcriptiona 42.2 16 0.00053 31.2 3.1 33 218-254 15-50 (195)
238 1mkm_A ICLR transcriptional re 42.2 24 0.00081 32.6 4.5 40 217-260 11-52 (249)
239 2gwr_A DNA-binding response re 42.1 15 0.00052 32.9 3.1 44 211-259 153-205 (238)
240 3f8b_A Transcriptional regulat 42.1 39 0.0013 27.5 5.4 44 20-63 44-92 (116)
241 1z7u_A Hypothetical protein EF 42.0 30 0.001 27.7 4.6 34 222-260 31-65 (112)
242 1kgs_A DRRD, DNA binding respo 41.5 14 0.0005 32.4 2.8 43 211-258 151-202 (225)
243 2ibd_A Possible transcriptiona 41.4 16 0.00055 31.5 3.1 31 218-252 22-55 (204)
244 2qwt_A Transcriptional regulat 41.3 18 0.00061 31.1 3.4 31 218-252 21-53 (196)
245 2wte_A CSA3; antiviral protein 41.3 29 0.001 32.3 5.0 42 20-63 177-218 (244)
246 2pg4_A Uncharacterized protein 41.1 19 0.00066 27.8 3.2 32 227-263 30-62 (95)
247 3vp5_A Transcriptional regulat 41.0 14 0.00049 31.6 2.7 32 218-253 20-54 (189)
248 2fbi_A Probable transcriptiona 40.9 25 0.00087 28.4 4.1 45 212-260 34-79 (142)
249 2bv6_A MGRA, HTH-type transcri 40.9 43 0.0015 27.1 5.6 90 214-316 37-132 (142)
250 3egq_A TETR family transcripti 40.7 9.5 0.00032 31.8 1.4 31 218-252 12-45 (170)
251 1j5y_A Transcriptional regulat 40.6 22 0.00076 31.4 3.9 43 216-262 23-67 (187)
252 3anp_C Transcriptional repress 40.6 12 0.00041 32.3 2.1 31 218-252 17-50 (204)
253 2fa5_A Transcriptional regulat 40.5 70 0.0024 26.5 7.0 45 214-263 49-94 (162)
254 2rek_A Putative TETR-family tr 40.5 11 0.00036 32.4 1.7 31 218-252 24-56 (199)
255 3dcf_A Transcriptional regulat 40.5 13 0.00045 31.9 2.4 32 217-252 38-72 (218)
256 2qlz_A Transcription factor PF 40.4 17 0.00059 33.8 3.2 43 214-260 12-54 (232)
257 3u2r_A Regulatory protein MARR 40.2 60 0.002 27.3 6.6 45 212-260 44-91 (168)
258 3qkx_A Uncharacterized HTH-typ 40.1 16 0.00053 30.6 2.7 31 218-252 16-49 (188)
259 2x4h_A Hypothetical protein SS 40.0 25 0.00087 28.8 4.0 49 226-281 30-78 (139)
260 2k4b_A Transcriptional regulat 40.0 20 0.0007 28.7 3.2 39 222-260 44-82 (99)
261 3p7n_A Sensor histidine kinase 39.8 23 0.00079 31.8 4.0 44 211-259 198-241 (258)
262 3s5r_A Transcriptional regulat 39.8 19 0.00066 30.9 3.3 31 218-252 18-51 (216)
263 2zb9_A Putative transcriptiona 39.8 12 0.00043 32.4 2.1 31 218-252 31-64 (214)
264 3i4p_A Transcriptional regulat 39.7 21 0.00073 30.7 3.6 41 216-260 5-46 (162)
265 2dg8_A Putative TETR-family tr 39.6 13 0.00043 31.9 2.0 31 218-252 17-50 (193)
266 1ui5_A A-factor receptor homol 39.4 14 0.00048 32.5 2.4 32 218-253 17-51 (215)
267 3jsj_A Putative TETR-family tr 39.2 13 0.00044 31.5 2.0 31 218-252 17-49 (190)
268 3ccy_A Putative TETR-family tr 39.2 9.8 0.00034 32.8 1.3 31 218-252 22-55 (203)
269 3cjn_A Transcriptional regulat 39.2 36 0.0012 28.4 4.9 44 213-260 51-95 (162)
270 1s3j_A YUSO protein; structura 39.1 46 0.0016 27.4 5.5 45 212-260 35-80 (155)
271 3u5c_K 40S ribosomal protein S 38.9 34 0.0012 28.0 4.3 45 21-65 37-81 (105)
272 2qko_A Possible transcriptiona 38.8 19 0.00064 31.3 3.1 32 217-252 35-69 (215)
273 1u9l_A Transcription elongatio 38.8 49 0.0017 24.9 5.0 33 139-174 28-60 (70)
274 3cdl_A Transcriptional regulat 38.7 13 0.00045 32.1 2.0 31 218-252 17-50 (203)
275 2eth_A Transcriptional regulat 38.7 27 0.00091 29.1 4.0 45 212-260 42-87 (154)
276 2qtq_A Transcriptional regulat 38.7 16 0.00053 31.3 2.5 33 217-253 23-58 (213)
277 3f0c_A TETR-molecule A, transc 38.5 15 0.0005 31.7 2.3 31 218-252 19-52 (216)
278 2e1c_A Putative HTH-type trans 38.4 30 0.001 30.1 4.4 46 211-260 24-70 (171)
279 2o7t_A Transcriptional regulat 37.9 14 0.00047 31.7 2.0 31 218-252 16-49 (199)
280 2yve_A Transcriptional regulat 37.9 15 0.00053 31.3 2.3 32 218-253 12-46 (185)
281 2qib_A TETR-family transcripti 37.9 14 0.00047 32.9 2.1 31 218-252 21-54 (231)
282 3dew_A Transcriptional regulat 37.8 14 0.00048 31.3 2.0 31 218-252 16-49 (206)
283 3rkx_A Biotin-[acetyl-COA-carb 37.8 21 0.00071 34.8 3.5 46 214-263 3-51 (323)
284 3q0w_A HTH-type transcriptiona 37.8 15 0.00052 32.6 2.4 32 217-252 51-85 (236)
285 2fbq_A Probable transcriptiona 37.5 14 0.00047 33.0 2.0 31 218-252 15-48 (235)
286 3frq_A Repressor protein MPHR( 37.5 9.1 0.00031 32.7 0.7 32 218-253 16-50 (195)
287 1ys7_A Transcriptional regulat 37.4 15 0.00051 32.5 2.2 44 210-258 158-210 (233)
288 3kkc_A TETR family transcripti 37.3 6.9 0.00024 32.8 -0.0 31 218-252 20-53 (177)
289 2fbh_A Transcriptional regulat 37.3 23 0.00079 28.8 3.3 45 212-260 35-81 (146)
290 3q9s_A DNA-binding response re 37.2 32 0.0011 31.2 4.6 43 211-258 182-233 (249)
291 1p4x_A Staphylococcal accessor 37.1 31 0.0011 32.2 4.5 43 20-62 185-230 (250)
292 3nrv_A Putative transcriptiona 36.9 33 0.0011 28.1 4.2 95 211-316 37-137 (148)
293 1sgm_A Putative HTH-type trans 36.7 11 0.00037 31.8 1.1 32 218-253 14-48 (191)
294 2oqr_A Sensory transduction pr 36.6 15 0.00051 32.5 2.1 44 210-258 155-207 (230)
295 2fd5_A Transcriptional regulat 36.5 11 0.00038 31.7 1.1 31 218-252 15-48 (180)
296 2r0q_C Putative transposon TN5 36.4 20 0.00068 32.2 2.9 34 216-254 165-198 (209)
297 3dpj_A Transcription regulator 36.4 15 0.00051 31.1 2.0 31 218-252 16-49 (194)
298 1t33_A Putative transcriptiona 36.4 14 0.00048 32.1 1.8 32 218-253 20-53 (224)
299 2xdn_A HTH-type transcriptiona 36.2 15 0.00051 31.8 2.0 31 218-252 19-52 (210)
300 2jj7_A Hemolysin II regulatory 36.0 15 0.0005 31.1 1.8 31 218-252 15-48 (186)
301 4aci_A HTH-type transcriptiona 36.0 13 0.00044 31.5 1.5 31 218-252 22-55 (191)
302 2hqr_A Putative transcriptiona 35.9 13 0.00045 32.7 1.6 43 211-258 143-194 (223)
303 1xma_A Predicted transcription 35.8 37 0.0013 28.9 4.4 44 20-63 73-121 (145)
304 2hku_A A putative transcriptio 35.7 18 0.00062 31.4 2.5 33 217-253 27-61 (215)
305 4hku_A LMO2814 protein, TETR t 35.7 10 0.00036 32.2 0.9 31 218-252 15-48 (178)
306 2qvo_A Uncharacterized protein 35.6 32 0.0011 26.5 3.7 29 228-260 31-59 (95)
307 3kz9_A SMCR; transcriptional r 35.6 18 0.00062 30.6 2.4 31 218-252 25-58 (206)
308 4esf_A PADR-like transcription 35.6 45 0.0015 27.2 4.8 44 20-63 41-89 (117)
309 3ri2_A Transcriptional regulat 35.4 46 0.0016 27.6 4.8 45 19-63 48-96 (123)
310 2w53_A Repressor, SMet; antibi 35.3 13 0.00043 32.5 1.3 32 217-252 18-52 (219)
311 3jw4_A Transcriptional regulat 35.1 1.8E+02 0.0061 23.5 10.0 95 212-317 39-141 (148)
312 3deu_A Transcriptional regulat 35.0 58 0.002 27.6 5.6 45 212-260 51-97 (166)
313 1xmk_A Double-stranded RNA-spe 35.0 26 0.00088 27.1 2.9 42 215-260 12-55 (79)
314 4esb_A Transcriptional regulat 34.6 49 0.0017 26.9 4.8 44 20-63 39-87 (115)
315 2xzm_7 Plectin/S10 domain cont 34.5 32 0.0011 30.2 3.7 46 19-64 35-80 (162)
316 2nx4_A Transcriptional regulat 34.4 17 0.00058 31.2 2.0 31 218-252 18-51 (194)
317 2g7s_A Transcriptional regulat 34.2 20 0.00068 30.0 2.4 31 218-252 16-49 (194)
318 3lhq_A Acrab operon repressor 34.2 17 0.00059 31.1 2.0 31 218-252 22-55 (220)
319 3hhh_A Transcriptional regulat 34.2 48 0.0016 27.1 4.7 44 20-63 43-91 (116)
320 3hta_A EBRA repressor; TETR fa 34.1 15 0.00051 32.3 1.7 32 217-252 35-69 (217)
321 3fm5_A Transcriptional regulat 34.1 97 0.0033 25.2 6.8 95 213-318 38-139 (150)
322 3cjd_A Transcriptional regulat 34.1 15 0.00053 31.7 1.7 32 218-253 20-54 (198)
323 3uj3_X DNA-invertase; helix-tu 34.1 8.5 0.00029 34.1 0.0 36 216-256 148-183 (193)
324 3gzi_A Transcriptional regulat 34.0 19 0.00066 31.0 2.4 32 218-253 25-59 (218)
325 3ppb_A Putative TETR family tr 34.0 19 0.00066 30.1 2.3 31 218-252 17-50 (195)
326 3nqo_A MARR-family transcripti 33.9 34 0.0012 29.8 4.0 95 212-317 39-141 (189)
327 2dql_A PEX protein; circadian 33.9 60 0.002 26.3 5.2 44 20-63 53-102 (115)
328 2xrn_A HTH-type transcriptiona 33.8 26 0.0009 32.2 3.3 39 218-260 10-50 (241)
329 1qpz_A PURA, protein (purine n 33.7 33 0.0011 32.4 4.2 45 229-292 2-46 (340)
330 3bhq_A Transcriptional regulat 33.7 21 0.00072 30.9 2.6 31 218-252 20-53 (211)
331 2iu5_A DHAS, YCEG, HTH-type dh 33.5 13 0.00045 31.8 1.2 31 218-252 21-54 (195)
332 3col_A Putative transcription 33.5 13 0.00043 31.4 1.0 31 218-252 18-51 (196)
333 1rkt_A Protein YFIR; transcrip 33.4 12 0.00042 32.3 1.0 31 218-252 20-53 (205)
334 2w48_A Sorbitol operon regulat 33.4 37 0.0013 32.5 4.5 38 219-260 13-50 (315)
335 3bjb_A Probable transcriptiona 33.1 20 0.0007 31.2 2.4 31 218-252 30-63 (207)
336 2pz9_A Putative regulatory pro 33.0 16 0.00054 32.2 1.7 32 217-252 37-71 (226)
337 2o03_A Probable zinc uptake re 33.0 17 0.0006 30.2 1.8 48 213-260 10-60 (131)
338 3rd3_A Probable transcriptiona 32.9 11 0.00036 32.0 0.4 31 218-252 18-51 (197)
339 2id3_A Putative transcriptiona 32.6 22 0.00076 31.3 2.6 31 218-252 48-81 (225)
340 2pex_A Transcriptional regulat 32.6 32 0.0011 28.4 3.4 45 212-260 45-90 (153)
341 3kor_A Possible Trp repressor; 32.4 28 0.00097 29.1 2.9 38 217-260 66-103 (119)
342 2hzt_A Putative HTH-type trans 32.3 46 0.0016 26.3 4.2 32 225-260 25-57 (107)
343 3c2b_A Transcriptional regulat 32.3 20 0.0007 31.0 2.2 31 218-252 23-56 (221)
344 3pas_A TETR family transcripti 32.2 15 0.00052 30.8 1.3 30 219-252 17-49 (195)
345 3on4_A Transcriptional regulat 32.1 22 0.00076 29.7 2.4 31 218-252 18-51 (191)
346 2g3b_A Putative TETR-family tr 32.1 14 0.00048 32.3 1.1 30 219-252 12-44 (208)
347 3crj_A Transcription regulator 32.0 14 0.00047 32.0 1.0 31 218-252 22-55 (199)
348 2nyx_A Probable transcriptiona 32.0 33 0.0011 29.1 3.5 45 212-260 43-88 (168)
349 2w57_A Ferric uptake regulatio 31.8 21 0.00073 30.5 2.2 48 213-260 16-67 (150)
350 3aqt_A Bacterial regulatory pr 31.8 15 0.0005 33.1 1.2 31 218-252 54-87 (245)
351 3knw_A Putative transcriptiona 31.8 22 0.00076 30.3 2.4 31 218-252 22-55 (212)
352 1zk8_A Transcriptional regulat 31.8 12 0.0004 31.6 0.5 31 218-252 16-49 (183)
353 3cwr_A Transcriptional regulat 31.7 18 0.00061 30.7 1.7 31 218-252 25-58 (208)
354 3mvp_A TETR/ACRR transcription 31.6 20 0.00069 30.7 2.1 31 218-252 34-67 (217)
355 2guh_A Putative TETR-family tr 31.4 24 0.00082 31.1 2.6 32 218-253 47-81 (214)
356 1hsj_A Fusion protein consisti 31.4 42 0.0014 33.6 4.7 43 20-62 431-476 (487)
357 3elk_A Putative transcriptiona 31.4 30 0.001 28.3 3.0 46 20-65 44-94 (117)
358 2np5_A Transcriptional regulat 31.2 21 0.0007 30.9 2.0 31 218-252 17-50 (203)
359 1jhf_A LEXA repressor; LEXA SO 31.1 52 0.0018 29.0 4.8 33 224-260 20-55 (202)
360 2frh_A SARA, staphylococcal ac 31.1 33 0.0011 27.9 3.2 45 212-260 35-82 (127)
361 2vn2_A DNAD, chromosome replic 31.1 38 0.0013 28.0 3.6 33 227-264 51-83 (128)
362 1okr_A MECI, methicillin resis 31.0 16 0.00054 29.4 1.1 101 212-318 8-121 (123)
363 3bni_A Putative TETR-family tr 30.8 23 0.0008 31.3 2.4 32 218-253 51-85 (229)
364 2o0y_A Transcriptional regulat 30.7 22 0.00074 33.1 2.2 31 226-260 37-67 (260)
365 2gfn_A HTH-type transcriptiona 30.6 19 0.00065 31.4 1.7 32 218-253 17-51 (209)
366 1x2i_A HEF helicase/nuclease; 30.6 40 0.0014 24.6 3.3 20 150-169 43-62 (75)
367 3boq_A Transcriptional regulat 30.6 26 0.0009 29.1 2.6 45 212-260 45-91 (160)
368 1z91_A Organic hydroperoxide r 30.5 32 0.0011 28.1 3.0 45 212-260 38-83 (147)
369 3ljl_A Transcriptional regulat 30.5 19 0.00065 29.9 1.6 31 218-252 22-55 (156)
370 3rh2_A Hypothetical TETR-like 30.4 22 0.00074 30.7 2.0 30 219-252 12-44 (212)
371 2hsg_A Glucose-resistance amyl 30.4 40 0.0014 31.6 4.1 45 228-291 3-47 (332)
372 3e7q_A Transcriptional regulat 30.4 13 0.00045 31.8 0.6 31 218-252 22-55 (215)
373 2glo_A Brinker CG9653-PA; prot 30.4 42 0.0014 23.5 3.3 32 220-256 15-50 (59)
374 2a6h_F RNA polymerase sigma fa 30.1 39 0.0013 34.0 4.2 44 210-257 359-406 (423)
375 2qlz_A Transcription factor PF 29.8 18 0.00062 33.6 1.5 38 218-260 170-207 (232)
376 2i10_A Putative TETR transcrip 29.7 27 0.00091 30.2 2.5 32 217-252 18-52 (202)
377 2ras_A Transcriptional regulat 29.6 13 0.00044 32.1 0.4 31 218-252 19-52 (212)
378 3hsr_A HTH-type transcriptiona 29.6 37 0.0013 27.7 3.3 32 225-260 48-79 (140)
379 3mnl_A KSTR, transcriptional r 29.5 18 0.00061 30.7 1.3 31 218-252 28-61 (203)
380 3b81_A Transcriptional regulat 29.3 18 0.00063 30.7 1.3 31 218-252 19-52 (203)
381 3npi_A TETR family regulatory 29.2 15 0.00051 33.0 0.8 31 218-252 26-59 (251)
382 2id6_A Transcriptional regulat 29.2 22 0.00074 30.7 1.8 31 219-253 14-47 (202)
383 1l9z_H Sigma factor SIGA; heli 29.1 41 0.0014 34.3 4.1 45 210-258 374-422 (438)
384 3g7r_A Putative transcriptiona 28.9 23 0.00079 31.0 2.0 32 217-252 42-76 (221)
385 1gdt_A GD resolvase, protein ( 28.9 30 0.001 30.2 2.7 32 217-253 149-180 (183)
386 2zcx_A SCO7815, TETR-family tr 28.8 23 0.0008 31.6 2.0 31 218-252 31-64 (231)
387 3nnr_A Transcriptional regulat 28.8 24 0.00081 30.9 2.0 31 218-252 13-46 (228)
388 3df8_A Possible HXLR family tr 28.7 67 0.0023 25.7 4.7 38 219-260 32-72 (111)
389 3loc_A HTH-type transcriptiona 28.6 19 0.00065 30.7 1.3 31 219-253 27-60 (212)
390 2g7u_A Transcriptional regulat 28.6 25 0.00085 32.7 2.2 31 226-260 28-58 (257)
391 1yg2_A Gene activator APHA; vi 28.5 63 0.0022 28.1 4.8 47 18-64 32-83 (179)
392 3qbm_A TETR transcriptional re 28.5 19 0.00066 30.3 1.3 31 218-252 15-48 (199)
393 3he0_A Transcriptional regulat 28.4 17 0.0006 30.6 1.0 31 218-252 19-52 (196)
394 1neq_A DNA-binding protein NER 27.6 24 0.00084 26.5 1.6 25 223-251 18-42 (74)
395 2p5k_A Arginine repressor; DNA 27.2 26 0.0009 24.6 1.7 26 226-255 18-48 (64)
396 1kft_A UVRC, excinuclease ABC 27.2 41 0.0014 25.2 2.9 21 151-171 54-74 (78)
397 3g1o_A Transcriptional regulat 27.2 23 0.00079 31.8 1.7 31 218-252 51-84 (255)
398 3mq0_A Transcriptional repress 27.2 32 0.0011 32.3 2.8 40 217-260 33-74 (275)
399 3v6g_A Probable transcriptiona 27.2 26 0.0009 30.7 2.0 32 218-253 22-56 (208)
400 1on2_A Transcriptional regulat 27.1 34 0.0012 28.1 2.6 33 226-263 21-53 (142)
401 3hrs_A Metalloregulator SCAR; 27.0 58 0.002 29.3 4.4 55 226-286 19-73 (214)
402 2fbk_A Transcriptional regulat 26.8 13 0.00044 32.2 -0.2 43 20-62 97-142 (181)
403 3nrg_A TETR family transcripti 26.7 19 0.00065 30.9 1.0 31 218-252 21-54 (217)
404 2esh_A Conserved hypothetical 26.6 33 0.0011 27.8 2.4 43 21-63 46-93 (118)
405 1bia_A BIRA bifunctional prote 26.4 46 0.0016 32.0 3.8 44 215-262 6-50 (321)
406 3r4k_A Transcriptional regulat 26.4 18 0.00063 33.7 0.8 31 226-260 20-50 (260)
407 1y0u_A Arsenical resistance op 26.4 76 0.0026 24.3 4.4 34 20-57 54-87 (96)
408 2kko_A Possible transcriptiona 25.9 87 0.003 24.7 4.8 41 20-60 49-89 (108)
409 3him_A Probable transcriptiona 25.9 16 0.00054 31.2 0.3 30 218-251 24-56 (211)
410 2hgc_A YJCQ protein; SR346, st 25.9 74 0.0025 25.8 4.3 44 20-63 27-76 (102)
411 3jth_A Transcription activator 25.9 1.2E+02 0.004 23.1 5.5 41 20-60 47-87 (98)
412 3cta_A Riboflavin kinase; stru 25.7 71 0.0024 28.8 4.8 44 20-63 38-81 (230)
413 2ia2_A Putative transcriptiona 25.7 22 0.00074 33.3 1.2 31 226-260 35-65 (265)
414 3kkd_A Transcriptional regulat 25.7 16 0.00056 32.3 0.3 32 218-253 43-77 (237)
415 2duy_A Competence protein come 25.6 61 0.0021 24.0 3.6 20 150-169 50-69 (75)
416 2fxa_A Protease production reg 25.4 1.1E+02 0.0036 27.2 5.8 71 212-287 46-122 (207)
417 3f6o_A Probable transcriptiona 25.4 99 0.0034 24.7 5.1 43 20-62 42-84 (118)
418 3f6v_A Possible transcriptiona 25.2 84 0.0029 26.8 4.9 43 20-62 82-124 (151)
419 3geu_A Intercellular adhesion 25.0 20 0.00069 30.2 0.8 30 219-252 12-44 (189)
420 3plo_X DNA-invertase; resolvas 24.9 15 0.00052 32.5 0.0 34 216-254 148-181 (193)
421 2v57_A TETR family transcripti 24.9 23 0.00079 29.8 1.2 30 219-252 23-53 (190)
422 2heo_A Z-DNA binding protein 1 24.5 1E+02 0.0035 22.3 4.6 31 20-53 36-66 (67)
423 2of7_A Putative TETR-family tr 24.5 31 0.0011 31.2 2.1 31 218-252 56-89 (260)
424 1z00_A DNA excision repair pro 24.0 61 0.0021 24.8 3.4 20 150-169 48-67 (89)
425 2iai_A Putative transcriptiona 23.8 22 0.00075 31.4 0.8 31 217-251 37-70 (230)
426 1sd4_A Penicillinase repressor 23.8 29 0.001 27.8 1.6 105 212-318 8-121 (126)
427 3c07_A Putative TETR-family tr 23.7 36 0.0012 31.3 2.4 31 218-252 49-82 (273)
428 3eup_A Transcriptional regulat 23.6 13 0.00046 31.5 -0.6 31 218-252 19-52 (204)
429 3ni7_A Bacterial regulatory pr 23.3 49 0.0017 29.1 3.1 31 218-252 15-48 (213)
430 3nw0_A Non-structural maintena 23.3 86 0.0029 29.0 4.8 35 18-56 130-164 (238)
431 2hyj_A Putative TETR-family tr 23.2 28 0.00094 30.0 1.3 31 218-252 20-53 (200)
432 2y75_A HTH-type transcriptiona 23.2 84 0.0029 25.5 4.3 37 20-57 37-73 (129)
433 1xn7_A Hypothetical protein YH 23.1 49 0.0017 25.3 2.6 31 226-260 15-45 (78)
434 3u1d_A Uncharacterized protein 23.1 98 0.0033 26.8 4.8 47 16-62 53-107 (151)
435 2v79_A DNA replication protein 23.0 1.4E+02 0.0047 25.0 5.7 34 226-264 50-83 (135)
436 2g9w_A Conserved hypothetical 22.8 73 0.0025 26.2 3.9 105 211-318 6-120 (138)
437 4b8x_A SCO5413, possible MARR- 22.7 36 0.0012 28.4 2.0 30 227-260 51-80 (147)
438 2e1n_A PEX, period extender; c 22.6 87 0.003 26.4 4.4 44 20-63 65-114 (138)
439 3on2_A Probable transcriptiona 22.5 14 0.00049 31.1 -0.7 31 218-252 20-53 (199)
440 2oi8_A Putative regulatory pro 22.4 37 0.0013 29.9 2.0 32 218-253 24-58 (216)
441 2f2e_A PA1607; transcription f 22.2 51 0.0017 27.8 2.8 31 226-260 36-66 (146)
442 2xig_A Ferric uptake regulatio 22.2 63 0.0022 27.4 3.4 47 214-260 27-76 (150)
443 4ets_A Ferric uptake regulatio 22.2 2.1E+02 0.0073 24.4 7.0 66 171-260 14-84 (162)
444 2opt_A Actii protein; helical 22.2 39 0.0013 30.7 2.2 31 218-252 14-47 (234)
445 2a1j_B DNA excision repair pro 22.1 63 0.0022 24.9 3.2 23 149-171 60-82 (91)
446 2fsw_A PG_0823 protein; alpha- 21.9 63 0.0022 25.4 3.2 32 225-260 36-68 (107)
447 2z99_A Putative uncharacterize 21.8 84 0.0029 29.0 4.4 107 144-260 25-140 (219)
448 2oer_A Probable transcriptiona 21.7 29 0.001 30.2 1.2 30 219-252 33-65 (214)
449 2h09_A Transcriptional regulat 21.6 69 0.0024 26.6 3.6 34 225-263 52-85 (155)
450 1rbl_M Ribulose 1,5 bisphospha 21.6 80 0.0027 25.9 3.7 33 9-41 8-40 (109)
451 1wcn_A Transcription elongatio 21.3 64 0.0022 24.1 2.9 28 139-169 29-56 (70)
452 1vz0_A PARB, chromosome partit 20.9 1.3E+02 0.0045 27.4 5.6 25 225-253 132-156 (230)
453 3o60_A LIN0861 protein; PSI, M 20.9 31 0.0011 29.8 1.2 23 226-252 39-61 (185)
454 2dk5_A DNA-directed RNA polyme 20.5 1.1E+02 0.0039 23.8 4.3 48 209-260 15-65 (91)
455 1bja_A Transcription regulator 20.2 1.4E+02 0.0047 23.8 4.8 67 211-286 13-83 (95)
456 3nxc_A HTH-type protein SLMA; 20.2 27 0.00093 29.8 0.7 23 226-252 44-66 (212)
No 1
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=99.79 E-value=2.2e-19 Score=150.70 Aligned_cols=86 Identities=28% Similarity=0.387 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCeeecchHHHHHHHHhCCCCHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHhhccC
Q 044490 108 EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLS 187 (430)
Q Consensus 108 e~~~~L~~~L~~~R~~lA~e~~vppy~Ifsd~tL~emA~~~P~T~~eL~~I~Gvg~~k~~kyG~~fL~~I~~~~~e~~~~ 187 (430)
+.+..||++|+.||.++|++.|+|||+||+|.||.+||..+|.|.++|.+|+|||+.|+++| ..||++|..+++++++.
T Consensus 12 ~~d~~l~~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~~~~~i~ 90 (103)
T 2e1f_A 12 ETQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLLEVIKHFCQTNSVQ 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTCCHHHHHHT-HHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhcCCCCCHHHHHHH-HHHHHHHHHHHHhcCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999 99999999999999988
Q ss_pred CCCCcCc
Q 044490 188 LDGKVGE 194 (430)
Q Consensus 188 ~~~~~~~ 194 (430)
.+.++..
T Consensus 91 ~~~~~~~ 97 (103)
T 2e1f_A 91 TDLFSST 97 (103)
T ss_dssp CCCCCC-
T ss_pred cCCCCCC
Confidence 8777543
No 2
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=99.77 E-value=5.2e-19 Score=143.42 Aligned_cols=77 Identities=25% Similarity=0.286 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCeeecchHHHHHHHHhCCCCHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 044490 108 EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKL 184 (430)
Q Consensus 108 e~~~~L~~~L~~~R~~lA~e~~vppy~Ifsd~tL~emA~~~P~T~~eL~~I~Gvg~~k~~kyG~~fL~~I~~~~~e~ 184 (430)
+.+..||++|++||.++|++.|+|||+||+|.||.+||..+|.|.++|.+|+|||+.|+++||..||++|..++.++
T Consensus 4 ~~~~~l~~~L~~wR~~~A~~~~vp~~~If~d~tL~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~~~e~ 80 (85)
T 2kv2_A 4 EMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWT 80 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCSCHHHHHTSSSCCHHHHHHTHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCcceeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999997765
No 3
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=8.2e-19 Score=146.74 Aligned_cols=78 Identities=24% Similarity=0.283 Sum_probs=74.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCeeecchHHHHHHHHhCCCCHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 044490 107 SEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKL 184 (430)
Q Consensus 107 ~e~~~~L~~~L~~~R~~lA~e~~vppy~Ifsd~tL~emA~~~P~T~~eL~~I~Gvg~~k~~kyG~~fL~~I~~~~~e~ 184 (430)
.+.+..||++|++||.++|++.|+|||+||+|.||.+||..+|.|.++|.+|+|||+.|+++||..||++|..++.++
T Consensus 18 ~e~~~~l~~~L~~wR~~~A~~~~vP~~~If~D~tL~eiA~~~P~t~~eL~~I~Gvg~~k~~~yG~~~L~~I~~~~~e~ 95 (101)
T 2rrd_A 18 EEMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWT 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCCHHHHHTSTTCCHHHHHHTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhChhh
Confidence 356789999999999999999999999999999999999999999999999999999999999999999999998765
No 4
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=99.76 E-value=1.1e-18 Score=138.72 Aligned_cols=73 Identities=25% Similarity=0.444 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCeeecchHHHHHHHHhCCCCHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Q 044490 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQ 182 (430)
Q Consensus 110 ~~~L~~~L~~~R~~lA~e~~vppy~Ifsd~tL~emA~~~P~T~~eL~~I~Gvg~~k~~kyG~~fL~~I~~~~~ 182 (430)
+..||++|++||.++|++.|+|||+||+|.+|.+||..+|.|.++|.+|+|||+.|+++||..||++|..|+.
T Consensus 4 d~~l~~~L~~wR~~~A~~~~vpp~~I~~d~~L~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~~~ 76 (77)
T 2rhf_A 4 NADLSEALRELRRELMKETGYSAFVVFTNATLEALAARQPRTLAELAEVPGLGEKRIEAYGERILDAINTVLD 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999864
No 5
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=99.76 E-value=4.9e-19 Score=150.86 Aligned_cols=87 Identities=26% Similarity=0.367 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCeeecchHHHHHHHHhCCCCHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHhhccC
Q 044490 108 EADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLS 187 (430)
Q Consensus 108 e~~~~L~~~L~~~R~~lA~e~~vppy~Ifsd~tL~emA~~~P~T~~eL~~I~Gvg~~k~~kyG~~fL~~I~~~~~e~~~~ 187 (430)
..+..||++|+.||.++|++.|+|||+||+|.||.+||..+|.|.++|.+|+|||+.|+++| ..||++|+.+++++++.
T Consensus 19 ~~d~~l~~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~~~~~~~ 97 (113)
T 2dgz_A 19 ETQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLWEVIKHFCQTNSVQ 97 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCSHHHHHHSSSCCTTGGGGG-HHHHHHHHHHHHTTTCC
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHH-HHHHHHHHHHHHhcCCC
Confidence 45679999999999999999999999999999999999999999999999999999999999 99999999999999998
Q ss_pred CCCCcCcc
Q 044490 188 LDGKVGEH 195 (430)
Q Consensus 188 ~~~~~~~~ 195 (430)
.+.++...
T Consensus 98 ~~~~~~~~ 105 (113)
T 2dgz_A 98 TDLFSSTK 105 (113)
T ss_dssp CCCCSSCC
T ss_pred CCCCCCCC
Confidence 88887543
No 6
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=99.76 E-value=8e-19 Score=143.53 Aligned_cols=76 Identities=24% Similarity=0.383 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCeeecchHHHHHHHHhCCCCHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 044490 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185 (430)
Q Consensus 110 ~~~L~~~L~~~R~~lA~e~~vppy~Ifsd~tL~emA~~~P~T~~eL~~I~Gvg~~k~~kyG~~fL~~I~~~~~e~~ 185 (430)
+..||++|+.||.++|++.++|||+||+|.+|.+||..+|.|.++|.+|+|||+.|+++||..||++|..++++++
T Consensus 12 ~~~l~~~L~~wR~~~A~~~~vpp~~If~D~tL~eiA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~I~~~~~e~~ 87 (89)
T 1wud_A 12 DRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDD 87 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999988765
No 7
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=99.75 E-value=3e-18 Score=148.07 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=93.6
Q ss_pred CCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhhhhhccCCCHHHHHHHHHHHHHhCCC
Q 044490 212 LTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK 291 (430)
Q Consensus 212 l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~~i~~~~l~~e~~~~I~~a~~~~g~~ 291 (430)
.+++...|++||+ +|+|+++||.. |+|+.+||++||++++..|..++++.|++++ ++++.++.|..++.+.+ .
T Consensus 18 k~~t~~~t~~l~~-~G~sleeIA~~----R~L~~~TI~~Hl~~~v~~G~~l~i~~~i~~~-l~~~~~~~I~~~~~~~~-~ 90 (122)
T 3iuo_A 18 KSKMKVSIVQQID-RKVALDDIAVS----HGLDFPELLSEVETIVYSGTRINIDYFINEV-MDEDHLEDIFEYFKEST-T 90 (122)
T ss_dssp HHHHHHHHHHHHH-TTCCHHHHHHH----TTCCHHHHHHHHHHHHHTTCCCCCHHHHHHH-SCHHHHHHHHHHHHHCS-C
T ss_pred CCccHHHHHHHHH-cCCCHHHHHHH----cCCCHHHHHHHHHHHHHcCCccCHHHHcccc-cCHHHHHHHHHHHHHcC-c
Confidence 4578899999999 99999999999 9999999999999999999889999999531 45899999999999988 5
Q ss_pred CChHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 044490 292 DKLKPIKNELPDDITYAHIKACLVMENCG 320 (430)
Q Consensus 292 ~~LkpIke~l~~~isY~~Irl~la~~~~~ 320 (430)
.+|+||+++|+++|+|++|||+++.+...
T Consensus 91 ~~Lk~i~e~l~~~~sy~eIRlv~a~~~~e 119 (122)
T 3iuo_A 91 DSLEEAMQELGKDYSEEEIRLVRIKFLSE 119 (122)
T ss_dssp CCHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHccCcCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999988754
No 8
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=99.41 E-value=1.8e-13 Score=119.97 Aligned_cols=79 Identities=29% Similarity=0.655 Sum_probs=64.5
Q ss_pred ChhhhhhcccccCcccCCCCCCHHHHHHHHHHHHHcCCceeeecCc--cce-EEeCcchHhhhcCCCCCCCCCeeeeccc
Q 044490 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDV--YRT-VSVSQQGKQYLGSARPDHQPPLLLTFNG 77 (430)
Q Consensus 1 ~kkI~~~~~d~l~~fG~Gk~ls~~~wk~li~qLi~~GyL~e~~~~~--y~~-l~LT~kg~~~L~g~~kv~~~~l~l~~~~ 77 (430)
|++|+++ |+.+++||+|+++++.+|+++++||+..|||.++ .+. |+. ++||++|+++|++..+. ++++.++.+.
T Consensus 46 ~~ki~~~-~~~l~tfGigk~~s~~~w~~lirqLi~~G~L~~~-~~~~~~~~~L~Lt~~g~~vL~~~~~~-~~~l~l~~~~ 122 (134)
T 3aaf_A 46 SQRLADQ-YRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEV-SRYNKFMKICALTKKGRNWLHKANTE-SQSLILQANE 122 (134)
T ss_dssp CTTSCGG-GGGSTTTTTTTTSCHHHHHHHHHHHHHTTSEEEE-ECSSTTCEEEEECHHHHHHHHHHTTS-CCCCEEC---
T ss_pred HHHHHHH-hCCCCccCCCCCCCHHHHHHHHHHHHHcCCceee-cCcCccCceEEECHHHHHHHhCCccC-CCceecCCcH
Confidence 6899998 9999999999999999999999999999999998 455 665 99999999999999876 6778888776
Q ss_pred ccccc
Q 044490 78 EMVDA 82 (430)
Q Consensus 78 ~~~~~ 82 (430)
++..+
T Consensus 123 ~l~~~ 127 (134)
T 3aaf_A 123 ELCPK 127 (134)
T ss_dssp -----
T ss_pred HHccc
Confidence 65443
No 9
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.22 E-value=1.2e-11 Score=127.59 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=72.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhCCCCeeecchHHHHHHHHhCCCCHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Q 044490 105 GFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180 (430)
Q Consensus 105 ~~~e~~~~L~~~L~~~R~~lA~e~~vppy~Ifsd~tL~emA~~~P~T~~eL~~I~Gvg~~k~~kyG~~fL~~I~~~ 180 (430)
.++..+..+|++|+.||.++|++.|+|||+||+|.+|.+||+.+|.|..+|.+|.|||..++++||..|+++|..+
T Consensus 323 ~l~~~~l~l~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~L~~i~g~~~~~~r~~g~~~l~~I~~a 398 (428)
T 3saf_A 323 HLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQA 398 (428)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCSSHHHHHTTCSSCCHHHHHTHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHcCCCcCEEECHHHHHHHHHHCCCCHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999999999999999999999999999999999999999999999999999999999985
No 10
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.17 E-value=2.3e-11 Score=124.97 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeeecchHHHHHHHHhCCCCHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Q 044490 109 ADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQ 182 (430)
Q Consensus 109 ~~~~L~~~L~~~R~~lA~e~~vppy~Ifsd~tL~emA~~~P~T~~eL~~I~Gvg~~k~~kyG~~fL~~I~~~~~ 182 (430)
.+..+|++|+.||.++|++.|+|||+||+|.+|.+||+.+|.|.++|.+|.|||..++++||..|+++|+.+.+
T Consensus 311 ~~~~l~~~L~~wR~~~Ar~~d~p~~~V~~D~~L~~iA~~~P~~~~~L~~i~g~~~~~~~~~g~~~l~~I~~~~~ 384 (410)
T 2hbj_A 311 EREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALR 384 (410)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCCSHHHHHTCTTCCCHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcEEECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999754
No 11
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.14 E-value=9.5e-11 Score=118.88 Aligned_cols=76 Identities=17% Similarity=0.255 Sum_probs=72.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhCCCCeeecchHHHHHHHHhCCCCHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Q 044490 106 FSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQ 182 (430)
Q Consensus 106 ~~e~~~~L~~~L~~~R~~lA~e~~vppy~Ifsd~tL~emA~~~P~T~~eL~~I~Gvg~~k~~kyG~~fL~~I~~~~~ 182 (430)
.+..+..+|++|+.||.++|++.|+|||+||+|.+|.+||..+|.|.++|.+| |+|+.++++||..|+++|+.+..
T Consensus 209 l~~~~~~~~~~L~~wR~~~A~~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~i-g~~~~~~~~~g~~~l~~i~~~~~ 284 (375)
T 1yt3_A 209 LRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQT 284 (375)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCGGGTSCHHHHHHHHHHCCCSHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCcceEECHHHHHHHHHHCCCCHHHHHhc-CCChHHHHHHHHHHHHHHHHHHh
Confidence 35668899999999999999999999999999999999999999999999999 99999999999999999998755
No 12
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=98.84 E-value=9.6e-10 Score=113.94 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=71.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCCeeecchHHHHHHHHhCCCCHHHHhccCCCCHHHH------------------HH
Q 044490 107 SEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLV------------------IT 168 (430)
Q Consensus 107 ~e~~~~L~~~L~~~R~~lA~e~~vppy~Ifsd~tL~emA~~~P~T~~eL~~I~Gvg~~k~------------------~k 168 (430)
+..+..+|++|..||.++|++.|+|||+||+|.+|.+||...|.|.++|.+|.||+..+. ++
T Consensus 230 ~~~~l~~~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 309 (440)
T 3cym_A 230 DRQALAIVRALWTRRDELAREYDIAPTLLLSDSSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRK 309 (440)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSCHHHHSCHHHHHHHHHHCCCSHHHHHTCSGGGSCCCCCCSSTHHHHHHTTHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCccEEECHHHHHHHHHHCCCCHHHHHhCCCCCchheecccchhhhhhcccchhhhh
Confidence 456789999999999999999999999999999999999999999999999999999998 88
Q ss_pred -HHHHHHHHHHHHHH
Q 044490 169 -HGDHLLQTIRHLSQ 182 (430)
Q Consensus 169 -yG~~fL~~I~~~~~ 182 (430)
||..|+++|..+..
T Consensus 310 ~~~~~~l~~i~~~~~ 324 (440)
T 3cym_A 310 IKPSMWKNIIQDALA 324 (440)
T ss_dssp SCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHh
Confidence 99999999998754
No 13
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.45 E-value=2e-07 Score=98.23 Aligned_cols=65 Identities=23% Similarity=0.424 Sum_probs=61.5
Q ss_pred ChhhhhhcccccCcccCCCCCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcCCCCC
Q 044490 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARPD 66 (430)
Q Consensus 1 ~kkI~~~~~d~l~~fG~Gk~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g~~kv 66 (430)
+++|.++||+++++||+|+++++.+|+.++++|+..|||.+. .+.|+.+.||++|+.+|+|..++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 508 (523)
T 1oyw_A 444 NQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQN-IAQHSALQLTEAARPVLRGESSL 508 (523)
T ss_dssp CHHHHHHTGGGSTTTTTTTTSCHHHHHHHHHHHHHTTSEEEE-GGGTTEEEECGGGHHHHHTSSCC
T ss_pred cHhHHhhcccccccccccCCCCHHHHHHHHHHHHHCCCceec-cCCCCceeeCHHHHHHhcCCceE
Confidence 578999999999999999999999999999999999999998 67899999999999999999764
No 14
>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1
Probab=98.36 E-value=1.1e-06 Score=69.21 Aligned_cols=73 Identities=22% Similarity=0.172 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCeeecchHHHHHHHHhCCCCHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHh
Q 044490 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQK 183 (430)
Q Consensus 110 ~~~L~~~L~~~R~~lA~e~~vppy~Ifsd~tL~emA~~~P~T~~eL~~I~Gvg~~k~~kyG~~fL~~I~~~~~e 183 (430)
....|++|++.|.+++.+.+.|--.+++|.+|++||...|.|..+|..|.|+.+..+++| ..|-++|.....+
T Consensus 5 l~~ay~~Lr~~~i~~s~~~~p~~s~~m~d~~Lrk~A~~LP~~e~eF~~L~g~~~~~~~~f-k~FK~~l~~L~k~ 77 (81)
T 1d8b_A 5 LRMTYERLRELSLNLGNRMVPPVGNFMPDSILKKMAAILPMNDSAFATLGTVEDKYRRRF-KYFKATIADLSKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSCCSCSSCHHHHHHHHHHCCCSHHHHGGGSCCCHHHHHHG-GGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCchhhhccHHHHHHHHHHCCCCHHHHHHccCCCHHHHHHH-HHHHHHHHHHHHH
Confidence 467899999999999999977777899999999999999999999999999999999998 7788887776554
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.56 E-value=8e-05 Score=79.66 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=50.9
Q ss_pred ChhhhhhcccccCcccCCCCCCHHHHHHHHHHHHHcCCceeee-cCccce---EEeCcchHhhhcCCCCC
Q 044490 1 SKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTETI-KDVYRT---VSVSQQGKQYLGSARPD 66 (430)
Q Consensus 1 ~kkI~~~~~d~l~~fG~Gk~ls~~~wk~li~qLi~~GyL~e~~-~~~y~~---l~LT~kg~~~L~g~~kv 66 (430)
|+||.++||+ |+++++.+|++++++|+.+|||.++. .+.|++ ++||++|+.+|+|..++
T Consensus 477 ~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (591)
T 2v1x_A 477 AAKLRVAGVV-------APTLPREDLEKIIAHFLIQQYLKEDYSFTAYATISYLKIGPKANLLNNEAHAI 539 (591)
T ss_dssp CGGGCCTTCC-------CCSCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECGGGGGGGSTTCCC
T ss_pred chHHHhcCCC-------cCcCCHHHHHHHHHHHHHcCCcEEecccCCCceeEEeeECHHHHHHhcCCceE
Confidence 4677778877 79999999999999999999999973 237875 78999999999999875
No 16
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=93.92 E-value=0.045 Score=43.75 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=40.4
Q ss_pred ccCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcC
Q 044490 209 RTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 209 ~~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G 259 (430)
...+++...+.+.|+. +|+|..|||.. -+++..||..|+..+...=
T Consensus 27 ~~~Lt~rE~~Vl~l~~-~G~s~~eIA~~----L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE-KGFTNQEIADA----LHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHH-TTCCHHHHHHH----HTCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHHHHHHHH
Confidence 4468888899999998 99999999999 9999999999999987654
No 17
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=93.45 E-value=0.051 Score=42.41 Aligned_cols=48 Identities=25% Similarity=0.227 Sum_probs=41.7
Q ss_pred cccCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 208 TRTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 208 ~~~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
....+++...+.+.++. +|+|..|||+. -+++.+||..|+..+...=.
T Consensus 18 ~~~~Lt~~e~~vl~l~~-~g~s~~eIA~~----l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 18 DVNQLTPRERDILKLIA-QGLPNKMIARR----LDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp CGGGSCHHHHHHHHHHT-TTCCHHHHHHH----HTSCHHHHHHHHHHHHHHTT
T ss_pred HHccCCHHHHHHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHHHHHHHHc
Confidence 34568888899999986 99999999999 99999999999998876653
No 18
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=93.31 E-value=0.078 Score=38.32 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcC
Q 044490 217 YEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 217 ~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G 259 (430)
.+.+.++. +|+|..|||+. -+++.+||..|+..+...=
T Consensus 4 ~~vl~l~~-~g~s~~eIA~~----l~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 4 RQVLKLID-EGYTNHGISEK----LHISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHHH-TSCCSHHHHHH----TCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHH----hCCCHHHHHHHHHHHHHHH
Confidence 45566766 99999999999 9999999999999887653
No 19
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=93.09 E-value=0.12 Score=53.23 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCeeecchHHHHHHHHhC---CCCHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Q 044490 110 DMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALAR---PSTKARLANIDGVNQHLVITHGDHLLQTIRHL 180 (430)
Q Consensus 110 ~~~L~~~L~~~R~~lA~e~~vppy~Ifsd~tL~emA~~~---P~T~~eL~~I~Gvg~~k~~kyG~~fL~~I~~~ 180 (430)
...+++.|+.++..+|++.++||-+|++.+.|++++-.. +..+.+++...|+..|+.+-+|..++.++..+
T Consensus 362 ~~~~~~~l~~~~~~~a~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~l~~~g~~~Wr~~~~~~~~~~~~~~~ 435 (440)
T 3cym_A 362 RLQVLNRVRKAVSQIAEDTRTPVEIVIKPQYLRNLCWTDEPRKRDVARFLSEQGARDWQVSLVAESVSRAIEGH 435 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHSCHHHHHHHHCSSCGGGCCHHHHHHHHTCCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHcCCHHHHHHHhCcCCCChhhHhHHHhhccCCCchHHHHHHHHHHHHhcc
Confidence 457999999999999999999999999999999999332 45688889999999999999999999998654
No 20
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=93.04 E-value=0.52 Score=40.22 Aligned_cols=93 Identities=13% Similarity=-0.017 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhhhhh-ccCCCHHHHHHHHHHHHHhCCCCChH
Q 044490 217 YEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCD-EVGLTDEIFSAIQEAISKVGCKDKLK 295 (430)
Q Consensus 217 ~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~~i~-~~~l~~e~~~~I~~a~~~~g~~~~Lk 295 (430)
.....++. +|+|+.+||.. -+++.+||..++..+-..|...+-..--. .-.++++....|...+.+.. ...+.
T Consensus 39 ~~iv~~~~-~G~s~~~iA~~----lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~-~~s~~ 112 (149)
T 1k78_A 39 QRIVELAH-QGVRPCDISRQ----LRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNP-TMFAW 112 (149)
T ss_dssp HHHHHHHH-TTCCHHHHHHH----HTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHCT-TCCHH
T ss_pred HHHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCc-chhHH
Confidence 45556666 99999999998 99999999999999988884222111000 11247888888888877643 25677
Q ss_pred HHHHhC--------CCCCCHHHHHHHHH
Q 044490 296 PIKNEL--------PDDITYAHIKACLV 315 (430)
Q Consensus 296 pIke~l--------~~~isY~~Irl~la 315 (430)
.|.+.+ +-.+++..|+=.+.
T Consensus 113 ~i~~~l~~~~~~~~g~~~S~sTV~r~L~ 140 (149)
T 1k78_A 113 EIRDRLLAERVCDNDTVPSVSSINRIIR 140 (149)
T ss_dssp HHHHHHHHTTSSCTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCcCHHHHHHHHH
Confidence 887777 55689988886554
No 21
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=92.92 E-value=0.068 Score=42.36 Aligned_cols=47 Identities=26% Similarity=0.147 Sum_probs=41.2
Q ss_pred ccCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 209 RTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 209 ~~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
...+++...+.+.|+. +|+|..|||+. -+++.+||..|+..+...=.
T Consensus 27 l~~Lt~~e~~vl~l~~-~g~s~~eIA~~----l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 27 YEMLTEREMEILLLIA-KGYSNQEIASA----SHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGGCCSHHHHHHHHHH-TTCCTTHHHHH----HTCCHHHHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHHHHHHHHC
Confidence 4467888889999987 99999999999 99999999999999876653
No 22
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=92.83 E-value=0.086 Score=42.30 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=39.6
Q ss_pred ccCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcC
Q 044490 209 RTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 209 ~~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G 259 (430)
...+++...+.+.|+. +|+|..|||+. -+++.+||..|+..+...=
T Consensus 25 l~~Lt~~e~~vl~l~~-~g~s~~eIA~~----l~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 25 LSGLTDQERTLLGLLS-EGLTNKQIADR----MFLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp --CCCHHHHHHHHHHH-TTCCHHHHHHH----HTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHHHHHHHH
Confidence 4468888899999986 99999999999 9999999999999887654
No 23
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=92.75 E-value=0.089 Score=42.89 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=40.1
Q ss_pred ccCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcC
Q 044490 209 RTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 209 ~~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G 259 (430)
...+++...+.+.++. +|+|..|||+. -+++.+||..|+..+...=
T Consensus 32 ~~~Lt~re~~Vl~l~~-~G~s~~EIA~~----L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-EGFLVTEIAKK----LNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHH-HTCCHHHHHHH----HTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHHHHHHHH
Confidence 3457888889999988 99999999999 9999999999999886643
No 24
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=92.70 E-value=0.089 Score=39.33 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=38.4
Q ss_pred cCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHc
Q 044490 210 TKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSE 258 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~ 258 (430)
..+++...+.+.++. +|+|..|||+. -+++.+||..|+..+...
T Consensus 10 ~~L~~~e~~il~~~~-~g~s~~eIA~~----l~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFELLV-QDKTTKEIASE----LFISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHHHT-TTCCHHHHHHH----HTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-cCCCHHHHHHH----HCCCHHHHHHHHHHHHHH
Confidence 457788888888886 99999999999 999999999999987654
No 25
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=91.90 E-value=0.11 Score=39.36 Aligned_cols=45 Identities=18% Similarity=0.064 Sum_probs=38.8
Q ss_pred CCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 211 KLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 211 ~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.+++...+.+.++. +|+|..|||+. -+++.+||..|+..+...=.
T Consensus 16 ~L~~~e~~vl~l~~-~g~s~~eIA~~----l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSAVV-AGLPNKSIAYD----LDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHHHT-TTCCHHHHHHH----TTSCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHHHHHHHHc
Confidence 46677778888886 99999999999 99999999999999877653
No 26
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=91.73 E-value=0.084 Score=35.71 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcC
Q 044490 218 EAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 218 ~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G 259 (430)
....++. +|+|..+||.. -+++.+||..|+..+-..|
T Consensus 13 ~i~~~~~-~g~s~~~IA~~----lgis~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 13 QLDVMKL-LNVSLHEMSRK----ISRSRHCIRVYLKDPVSYG 49 (51)
T ss_dssp HHHHHHH-TTCCHHHHHHH----HTCCHHHHHHHHHCSTTTT
T ss_pred HHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHhhHHhcC
Confidence 4555666 99999999999 9999999999987665544
No 27
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=91.22 E-value=0.32 Score=39.66 Aligned_cols=92 Identities=16% Similarity=-0.032 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhhhh-hccCCCHHHHHHHHHHHHHhCCCCChH
Q 044490 217 YEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLC-DEVGLTDEIFSAIQEAISKVGCKDKLK 295 (430)
Q Consensus 217 ~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~~i-~~~~l~~e~~~~I~~a~~~~g~~~~Lk 295 (430)
.....++. +|+|+.+||.. -+++.+||..++..+-..|...+-.+-- ..--++++....|...+.+.. ...+.
T Consensus 24 ~~i~~~~~-~g~s~~~ia~~----lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~~~~-~~s~~ 97 (128)
T 1pdn_C 24 LKIVEMAA-DGIRPCVISRQ----LRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSP-GMFSW 97 (128)
T ss_dssp HHHHHHHH-TTCCHHHHHHH----HTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTTTCT-TCCHH
T ss_pred HHHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHHhCc-chHHH
Confidence 45556666 99999999998 9999999999999988877422211000 001246666666766655433 24566
Q ss_pred HHHHhC---CC-----CCCHHHHHHHH
Q 044490 296 PIKNEL---PD-----DITYAHIKACL 314 (430)
Q Consensus 296 pIke~l---~~-----~isY~~Irl~l 314 (430)
.|.+.| +- .+++..|+-.+
T Consensus 98 ~i~~~l~~~g~~~~~~~~s~~tv~r~l 124 (128)
T 1pdn_C 98 EIREKLIREGVCDRSTAPSVSAISRLV 124 (128)
T ss_dssp HHHHHHHHTSSSCSTTCCCHHHHHHHC
T ss_pred HHHHHHHHcCCccccCCcCHHHHHHHH
Confidence 666666 43 46777776443
No 28
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=90.11 E-value=0.25 Score=38.97 Aligned_cols=44 Identities=27% Similarity=0.157 Sum_probs=36.8
Q ss_pred cCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHH
Q 044490 210 TKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVS 257 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~ 257 (430)
..|++..++.+.|..-+|+|..|||+. -+++.+||..|+..+..
T Consensus 36 ~~L~~~~r~vl~l~~~~g~s~~eIA~~----lgis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 36 AQLSAEHRAVIQRSYYRGWSTAQIATD----LGIAEGTVKSRLHYAVR 79 (92)
T ss_dssp HTSCHHHHHHHHHHHTSCCCHHHHHHH----HTSCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHcCCCHHHHHHH----HCcCHHHHHHHHHHHHH
Confidence 346677788888843499999999999 99999999999988754
No 29
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=89.94 E-value=0.25 Score=36.67 Aligned_cols=45 Identities=9% Similarity=0.167 Sum_probs=37.7
Q ss_pred CCCchHHHHHHHHH----hcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcC
Q 044490 211 KLTPAKYEAWKMWH----EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 211 ~l~~t~~~T~~l~~----~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G 259 (430)
.+++..++.+.+.. -+|+|..|||+. -+++.+||..|+..+...=
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~----lgis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQ----FDVTRERIRQIEAKALRKL 53 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHH----HTCCHHHHHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHH----HCcCHHHHHHHHHHHHHHH
Confidence 46677777777765 489999999999 9999999999999987654
No 30
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=89.77 E-value=0.2 Score=50.14 Aligned_cols=70 Identities=6% Similarity=-0.034 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeeecchHHHHHHHHhCCCCHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 044490 109 ADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKARLANIDGVNQHLVITHGDHLLQTIR 178 (430)
Q Consensus 109 ~~~~L~~~L~~~R~~lA~e~~vppy~Ifsd~tL~emA~~~P~T~~eL~~I~Gvg~~k~~kyG~~fL~~I~ 178 (430)
....+++.|+.++..+|++.|+||-+|.+.+.|++++...|.+..+-.-...+..|+.+-+|..+++++.
T Consensus 302 ~~~~~~~~l~~~~~~~a~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~Wr~~~~~~~l~~~l~ 371 (375)
T 1yt3_A 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLLQ 371 (375)
T ss_dssp THHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHHTTCSCCSSCCGGGSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCHHHcCCHHHHHHHHhhcccCCCcchhhhhhcchHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999754322111112233679999999999988875
No 31
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=88.99 E-value=0.93 Score=39.15 Aligned_cols=97 Identities=11% Similarity=-0.039 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhhhhh-ccCCCHHHHHHHHHHHHHhCCCCChH
Q 044490 217 YEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCD-EVGLTDEIFSAIQEAISKVGCKDKLK 295 (430)
Q Consensus 217 ~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~~i~-~~~l~~e~~~~I~~a~~~~g~~~~Lk 295 (430)
.....++. +|+|+.+||.. -+++.+||..++..+...|...+-.+--. .-.++++....|...+.+.. ...+.
T Consensus 32 ~~ii~l~~-~G~s~~~IA~~----lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~-~~s~~ 105 (159)
T 2k27_A 32 QRIVDLAH-QGVRPCDISRQ----LRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNP-TMFAW 105 (159)
T ss_dssp HHHHHHHH-HTCCHHHHHHH----HTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHCS-SSCHH
T ss_pred HHHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHCc-cchHH
Confidence 45556666 99999999998 89999999999988766664211100000 11246667778877776643 25677
Q ss_pred HHHHhC--------CCCCCHHHHHHHHHHHHh
Q 044490 296 PIKNEL--------PDDITYAHIKACLVMENC 319 (430)
Q Consensus 296 pIke~l--------~~~isY~~Irl~la~~~~ 319 (430)
.|.+.+ +..++|..|+=.+..+..
T Consensus 106 ~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~ 137 (159)
T 2k27_A 106 EIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQ 137 (159)
T ss_dssp HHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcccccCCccCHHHHHHHHHHHhC
Confidence 777777 456899999876665443
No 32
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=88.90 E-value=0.42 Score=39.61 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=37.8
Q ss_pred CCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcC
Q 044490 211 KLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 211 ~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G 259 (430)
.+++..+..+.|+.-+|+|..|||+. -+++.+||..|+..+...=
T Consensus 25 ~L~~~~r~vl~l~~~~g~s~~EIA~~----lgiS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDYSLSEIADT----FNVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp GSCHHHHHHHHHHHTSCCCHHHHHHH----TTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHH----HCcCHHHHHHHHHHHHHHH
Confidence 46677778888864499999999999 9999999999998886543
No 33
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=88.88 E-value=0.41 Score=35.15 Aligned_cols=45 Identities=22% Similarity=0.114 Sum_probs=37.2
Q ss_pred cCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHc
Q 044490 210 TKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSE 258 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~ 258 (430)
..+++.....+.+..-+|+|..|||+. -+++.+||..++..+...
T Consensus 14 ~~L~~~~r~il~l~~~~g~s~~eIA~~----lgis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLLGLSYADAAAV----CGCPVGTIRSRVARARDA 58 (70)
T ss_dssp TSSCHHHHHHHHHHHTSCCCHHHHHHH----HTSCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHH----HCcCHHHHHHHHHHHHHH
Confidence 346777778888754499999999999 999999999999887543
No 34
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=88.42 E-value=0.44 Score=35.84 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=37.8
Q ss_pred cCCCchHHHHHHHHHh----cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHc
Q 044490 210 TKLTPAKYEAWKMWHE----DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSE 258 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~----~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~ 258 (430)
..+++...+.+.+..- +|+|..|||+. -+++.+||..|+..+...
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~s~~eIA~~----l~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAY----FGVTRERIRQIENKALRK 57 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHH----HTCCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCCCHHHHHHH----HCCCHHHHHHHHHHHHHH
Confidence 4567777888888775 79999999999 999999999998887543
No 35
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=88.35 E-value=2.3 Score=35.23 Aligned_cols=93 Identities=16% Similarity=0.111 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhhhhhccCCCHHHHHHHHHHHHHhCCCCChHH
Q 044490 217 YEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKDKLKP 296 (430)
Q Consensus 217 ~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~~i~~~~l~~e~~~~I~~a~~~~g~~~~Lkp 296 (430)
.....++. +|+|+.+||.. -+++.+||+.++..+...|.. .... ..-.++++....|.... ..+ ......
T Consensus 13 ~~i~~~~~-~G~s~~~ia~~----lgis~~Tv~r~~~~~~~~g~~-~~~g--r~~~l~~~~~~~i~~~~-~~~-~~s~~~ 82 (141)
T 1u78_A 13 AQLDVMKL-LNVSLHEMSRK----ISRSRHCIRVYLKDPVSYGTS-KRAP--RRKALSVRDERNVIRAA-SNS-CKTARD 82 (141)
T ss_dssp HHHHHHHH-TTCCHHHHHHH----HTCCHHHHHHHHHSGGGTTCC-CCCC--CCCSSCHHHHHHHHHHH-HHC-CCCHHH
T ss_pred HHHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHHcccccCCc-CCCC--CCCcCCHHHHHHHHHHH-hCC-CCCHHH
Confidence 34455665 99999999998 999999999999887665531 1100 00124777777776663 333 367899
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCC
Q 044490 297 IKNELPDDITYAHIKACLVMENCGI 321 (430)
Q Consensus 297 Ike~l~~~isY~~Irl~la~~~~~~ 321 (430)
|.+.|+-.+++..|+-.+.. .|+
T Consensus 83 i~~~lg~~~s~~tV~r~l~~--~g~ 105 (141)
T 1u78_A 83 IRNELQLSASKRTILNVIKR--SGV 105 (141)
T ss_dssp HHHHTTCCSCHHHHHHHHHH--TC-
T ss_pred HHHHHCCCccHHHHHHHHHH--CCC
Confidence 99999767999999866543 454
No 36
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=87.75 E-value=0.45 Score=39.54 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=37.4
Q ss_pred CCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHc
Q 044490 211 KLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSE 258 (430)
Q Consensus 211 ~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~ 258 (430)
.+++.....+.+..-+|+|..|||+. -+++.+||..|+..+...
T Consensus 22 ~L~~~~r~vl~l~y~~g~s~~EIA~~----lgiS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDYSLAEIADE----FGVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp GSCHHHHHHHHHHHHTCCCHHHHHHH----HTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHH----HCcCHHHHHHHHHHHHHH
Confidence 46677788888864499999999999 999999999999988653
No 37
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=87.11 E-value=0.29 Score=38.74 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=39.3
Q ss_pred CchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 213 TPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 213 ~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
..+....+.++++.|.|..|||.. -+++.+||..||..+...|.
T Consensus 16 ~~~~~~IL~lL~~~g~sa~eLAk~----LgiSk~aVr~~L~~Le~eG~ 59 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEGATAAQLTRQ----LNMEKREVNKALYDLQRSAM 59 (82)
T ss_dssp HHHHHHHHHHHSSSTEEHHHHHHH----SSSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 356677788887789999999999 99999999999999999995
No 38
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=86.84 E-value=0.53 Score=43.77 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=40.2
Q ss_pred cCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcC
Q 044490 210 TKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G 259 (430)
..+++...+.+.++. +|+|..|||.+ -++++.||..|+..+.++=
T Consensus 174 ~~Lt~re~~vl~~~~-~G~s~~eIa~~----l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 174 VRLTARETEMLKWTA-VGKTYGEIGLI----LSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp CCCCHHHHHHHHHHH-TTCCHHHHHHH----HTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH-cCCCHHHHHHH----HCCCHHHHHHHHHHHHHHh
Confidence 357888889999987 99999999999 9999999999999987653
No 39
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=86.56 E-value=0.3 Score=34.50 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 216 KYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 216 ~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
....+.++. +|+|..+||.. -+++.+||..|+.
T Consensus 21 ~~~i~~l~~-~g~s~~eIA~~----lgis~~TV~~~l~ 53 (55)
T 2x48_A 21 VSVAHELAK-MGYTVQQIANA----LGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHH-TTCCHHHHHHH----HTSCHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHH
Confidence 345555665 99999999999 9999999999974
No 40
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=86.46 E-value=0.83 Score=30.97 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHH
Q 044490 217 YEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLE 254 (430)
Q Consensus 217 ~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~ 254 (430)
.....++. +|.|+.+||.. -+++.+||+.|+..
T Consensus 12 ~~i~~l~~-~g~s~~~ia~~----lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 12 EQISRLLE-KGHPRQQLAII----FGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHHHH-TTCCHHHHHHT----TSCCHHHHHHHSCT
T ss_pred HHHHHHHH-cCCCHHHHHHH----HCCCHHHHHHHHHH
Confidence 45566666 89999999998 99999999988743
No 41
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=86.24 E-value=0.66 Score=36.25 Aligned_cols=46 Identities=11% Similarity=0.232 Sum_probs=38.9
Q ss_pred cCCCchHHHHHHHHHh----cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcC
Q 044490 210 TKLTPAKYEAWKMWHE----DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~----~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G 259 (430)
..+++..+..+.+..- +|+|..|||.. -+++.+||..|+..+...=
T Consensus 17 ~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~----lgis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQY----FNVTRERIRQIEVKALRKL 66 (87)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHH----HTCCHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHccCCCCCCCHHHHHHH----HCCCHHHHHHHHHHHHHHH
Confidence 4577777888888765 79999999999 9999999999999887654
No 42
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=86.13 E-value=11 Score=35.39 Aligned_cols=29 Identities=14% Similarity=0.176 Sum_probs=27.9
Q ss_pred CCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 228 LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 228 ~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.++.+||+. .+++.+||...+..+.+.|.
T Consensus 175 ~t~~eLa~~----l~i~~~tvt~~v~rLe~~Gl 203 (250)
T 1p4x_A 175 VLLKDLIET----IHHKYPQTVRALNNLKKQGY 203 (250)
T ss_dssp EEHHHHHHH----SSSCHHHHHHHHHHHHHHTS
T ss_pred cCHHHHHHH----HCCChhhHHHHHHHHHHCCC
Confidence 899999999 99999999999999999996
No 43
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=85.61 E-value=0.61 Score=43.12 Aligned_cols=44 Identities=25% Similarity=0.261 Sum_probs=39.1
Q ss_pred cCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHc
Q 044490 210 TKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSE 258 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~ 258 (430)
..+++...+.+.++. +|+|..|||.+ -+++++||..|+..+.+.
T Consensus 174 ~~Lt~~e~~vl~~~~-~g~s~~eIa~~----l~is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 174 QMLSPREMLCLVWAS-KGKTASVTANL----TGINARTVQHYLDKARAK 217 (236)
T ss_dssp GSCCHHHHHHHHHHH-TTCCHHHHHHH----HCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHHHHHHH
Confidence 357888888898887 99999999999 999999999999988664
No 44
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=85.33 E-value=0.61 Score=43.80 Aligned_cols=46 Identities=22% Similarity=0.112 Sum_probs=41.0
Q ss_pred cCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 210 TKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
..+++..++.+.|+. +|+|..|||+. -+++++||..|+..+...=.
T Consensus 196 ~~L~~~erevl~L~~-~G~s~~EIA~~----L~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 196 NILSEREKEILRCIR-KGLSSKEIAAT----LYISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp TSSCHHHHHHHHHHH-TTCCHHHHHHH----HTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHHHHHHHHc
Confidence 468888899999986 99999999999 99999999999999876653
No 45
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=84.02 E-value=0.63 Score=42.96 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=39.1
Q ss_pred cCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHc
Q 044490 210 TKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSE 258 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~ 258 (430)
..+++...+.+.++. +|+|..|||.+ -+++++||..|+..+.+.
T Consensus 172 ~~Lt~~e~~vl~~~~-~g~s~~eIa~~----l~is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 172 AWLDPKEATYLRWIA-VGKTMEEIADV----EGVKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCHHHHHHHHHHT-TTCCHHHHHHH----HTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHHHHHHH
Confidence 357888888898887 99999999999 999999999999988664
No 46
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=83.76 E-value=1.2 Score=35.68 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g 62 (430)
+++...+...++.|...||+... .+ .+.||++|.++|..
T Consensus 31 ~ls~~~~~~~l~~L~~~GLI~~~-~~---~~~LT~kG~~~l~~ 69 (95)
T 1r7j_A 31 NLSYALTGRYIKMLMDLEIIRQE-GK---QYMLTKKGEELLED 69 (95)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEE-TT---EEEECHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCeEEE-CC---eeEEChhHHHHHHH
Confidence 58999999999999999999987 43 48999999999874
No 47
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=83.69 E-value=0.82 Score=34.16 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=37.2
Q ss_pred CCchHHHHHHHHHhc--CCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMWHED--GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~~~~--G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+.+...+.++++.+. .+|..+||+. -+++.+||..||..+...|.
T Consensus 8 m~~~~~~IL~~L~~~~~~~s~~eLA~~----lglsr~tv~~~l~~L~~~G~ 54 (67)
T 2heo_A 8 GDNLEQKILQVLSDDGGPVAIFQLVKK----CQVPKKTLNQVLYRLKKEDR 54 (67)
T ss_dssp -CHHHHHHHHHHHHHCSCEEHHHHHHH----HCSCHHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHHHcCCCcCHHHHHHH----HCcCHHHHHHHHHHHHHCCc
Confidence 444556677777643 4899999999 99999999999999999996
No 48
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=83.29 E-value=0.82 Score=43.38 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=39.8
Q ss_pred CCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcC
Q 044490 211 KLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 211 ~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G 259 (430)
.+++...+.+.++. +|+|..|||.+ -++++.||..|+..+.++=
T Consensus 197 ~Lt~re~~vl~~~~-~G~s~~eIA~~----l~is~~TV~~~~~~~~~kl 240 (265)
T 3qp6_A 197 PLSQREYDIFHWMS-RGKTNWEIATI----LNISERTVKFHVANVIRKL 240 (265)
T ss_dssp CCCHHHHHHHHHHH-TTCCHHHHHHH----HTSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHHHHHHHh
Confidence 57888889999987 99999999999 9999999999999997754
No 49
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=83.18 E-value=0.75 Score=38.86 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=34.3
Q ss_pred CCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHH
Q 044490 211 KLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVS 257 (430)
Q Consensus 211 ~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~ 257 (430)
.+++..+..+.++. +|+|..|||+. -+++.+||..++..+..
T Consensus 109 ~L~~~~r~v~~~~~-~g~s~~EIA~~----lgis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 109 NFSKFEKEVLTYLI-RGYSYREIATI----LSKNLKSIDNTIQRIRK 150 (164)
T ss_dssp HSCHHHHHHHHHHT-TTCCHHHHHHH----HTCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH-cCCCHHHHHHH----HCCCHHHHHHHHHHHHH
Confidence 35556666677666 99999999999 99999999999888743
No 50
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=82.74 E-value=1.6 Score=34.40 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g 62 (430)
++++.-+-++++.|...||+..........+.||++|++++..
T Consensus 37 ~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~ 79 (99)
T 1tbx_A 37 PMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAIS 79 (99)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHH
Confidence 5799999999999999999987632233478999999999874
No 51
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=82.26 E-value=0.77 Score=39.60 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=38.8
Q ss_pred ccCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHc
Q 044490 209 RTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSE 258 (430)
Q Consensus 209 ~~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~ 258 (430)
...+++..++.+.|..-+|+|..|||+. -+++++||..+|..+...
T Consensus 91 l~~Lp~~~r~vl~L~~~~g~s~~EIA~~----lgis~~tV~~~l~rar~~ 136 (157)
T 2lfw_A 91 LARMTPLSRQALLLTAMEGFSPEDAAYL----IEVDTSEVETLVTEALAE 136 (157)
T ss_dssp TTTSCTTHHHHHTTTSSSCCCHHHHHHT----TTSCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHcCCCHHHHHHH----HCcCHHHHHHHHHHHHHH
Confidence 4567888888888864499999999999 999999999999887543
No 52
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=79.63 E-value=1.8 Score=37.88 Aligned_cols=44 Identities=25% Similarity=0.187 Sum_probs=36.9
Q ss_pred cCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHH
Q 044490 210 TKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVS 257 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~ 257 (430)
..+++..+..+.|..-+|+|..|||+. -+++.+||..++..+..
T Consensus 139 ~~L~~~~r~vl~l~~~~g~s~~EIA~~----lgis~~tV~~~l~ra~~ 182 (194)
T 1or7_A 139 ESLPEDLRMAITLRELDGLSYEEIAAI----MDCPVGTVRSRIFRARE 182 (194)
T ss_dssp HHSCHHHHHHHHHHHTTCCCHHHHHHH----TTSCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHhHHHHHcCCCHHHHHHH----HCCCHHHHHHHHHHHHH
Confidence 346677778888854499999999999 99999999999988754
No 53
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=78.81 E-value=1.5 Score=38.02 Aligned_cols=44 Identities=14% Similarity=0.069 Sum_probs=37.1
Q ss_pred cCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHH
Q 044490 210 TKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVS 257 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~ 257 (430)
..+++..++.+.|..-+|+|..|||+. -|++++||..|+..+..
T Consensus 134 ~~L~~~~r~vl~l~~~~g~s~~eIA~~----lgis~~tV~~~l~ra~~ 177 (184)
T 2q1z_A 134 ARLPEAQRALIERAFFGDLTHRELAAE----TGLPLGTIKSRIRLALD 177 (184)
T ss_dssp HTSCHHHHHHHHHHHHSCCSSCCSTTT----CCCCCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHH----HCcCHHHHHHHHHHHHH
Confidence 356777788888854499999999999 99999999999988754
No 54
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=78.21 E-value=2.9 Score=36.29 Aligned_cols=84 Identities=10% Similarity=0.147 Sum_probs=59.8
Q ss_pred chHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhhhh--hccCCCHHHHHHHHHHHHHhCCC
Q 044490 214 PAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLC--DEVGLTDEIFSAIQEAISKVGCK 291 (430)
Q Consensus 214 ~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~~i--~~~~l~~e~~~~I~~a~~~~g~~ 291 (430)
++....+.++.+..+++.+||+. -+++.+||..||..+...|. +.-.+-- ....++++.+..+...+..+- .
T Consensus 58 p~R~~IL~~L~~~~~t~~eLa~~----lgls~stvs~hL~~L~~aGl-V~~~~~Gr~~~y~lt~~~~~~l~~~l~~~~-~ 131 (151)
T 3f6v_A 58 PTRRRLVQLLTSGEQTVNNLAAH----FPASRSAISQHLRVLTEAGL-VTPRKDGRFRYYRLDPQGLAQLRALFDSFW-I 131 (151)
T ss_dssp HHHHHHHHHGGGCCEEHHHHHTT----SSSCHHHHHHHHHHHHHTTS-EEEEEETTEEEEEECHHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC-EEEEecCCEEEEEEChHHHHHHHHHHHHHH-H
Confidence 45566666666578999999998 99999999999999999995 5321100 001258888888888777654 2
Q ss_pred CChHHHHHhCCC
Q 044490 292 DKLKPIKNELPD 303 (430)
Q Consensus 292 ~~LkpIke~l~~ 303 (430)
..+..+.+.++.
T Consensus 132 ~~l~~l~~~l~~ 143 (151)
T 3f6v_A 132 DELDRLVADATE 143 (151)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhh
Confidence 556666666655
No 55
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=77.56 E-value=2.2 Score=34.52 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=34.4
Q ss_pred CCchHHHHHHHHHh----cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcC
Q 044490 212 LTPAKYEAWKMWHE----DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 212 l~~t~~~T~~l~~~----~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G 259 (430)
+++..+..+.|..- +|+|..|||+. -+++.+||..|+..+...=
T Consensus 20 Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~----lgiS~~tVr~~~~rAlkkL 67 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMNTDYTLEEVGKQ----FDVTRERIRQIEAKALRKL 67 (99)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHH----HCcCHHHHHHHHHHHHHHH
Confidence 44555566666542 68999999999 9999999999998886553
No 56
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=76.43 E-value=3.2 Score=32.54 Aligned_cols=43 Identities=2% Similarity=0.108 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g 62 (430)
++++.-+-++++.|...|||...-+.....+.||++|+.++..
T Consensus 41 ~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~ 83 (95)
T 2qvo_A 41 NSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQ 83 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHH
Confidence 4789999999999999999943212223479999999998864
No 57
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=76.35 E-value=3.2 Score=34.34 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcCCCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARP 65 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g~~k 65 (430)
++|...+.+.++.|...|+|... .. +.+.||++|+++|.+...
T Consensus 40 giS~~aVs~rL~~Le~~GLV~~~-~r--g~Y~LT~~G~~~l~~~~d 82 (111)
T 3b73_A 40 RISKSSVSRRLKKLADHDLLQPL-AN--GVYVITEEGEAYLNGEYD 82 (111)
T ss_dssp CSCHHHHHHHHHHHHHTTSEEEC-ST--TCEEECHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEec-CC--ceEEECchHHHHHHHHHH
Confidence 56999999999999999999975 43 589999999999998754
No 58
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=76.18 E-value=2.4 Score=33.28 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 215 AKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 215 t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.....+.++ ..++++.+||+. -+++.+||..||..+...|.
T Consensus 32 ~r~~Il~~L-~~~~~~~eLa~~----l~is~~tv~~~L~~L~~~Gl 72 (96)
T 1y0u_A 32 VRRKILRML-DKGRSEEEIMQT----LSLSKKQLDYHLKVLEAGFC 72 (96)
T ss_dssp HHHHHHHHH-HTTCCHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHH-cCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 334455555 588999999998 89999999999999999995
No 59
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=75.91 E-value=3 Score=34.14 Aligned_cols=68 Identities=10% Similarity=0.167 Sum_probs=46.1
Q ss_pred chHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhhhh--hccCCCHHHHHHHHHHHH
Q 044490 214 PAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLC--DEVGLTDEIFSAIQEAIS 286 (430)
Q Consensus 214 ~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~~i--~~~~l~~e~~~~I~~a~~ 286 (430)
++....+.++.+...++.+||+. -+++.+||..||..+...|. +.-.+-- ....++++.+..+...+.
T Consensus 18 ~~R~~Il~~L~~~~~~~~eLa~~----l~is~~tvs~hL~~L~~~Gl-V~~~~~gr~~~y~l~~~~~~~l~~~~~ 87 (118)
T 3f6o_A 18 PTRRAVLGRLSRGPATVSELAKP----FDMALPSFMKHIHFLEDSGW-IRTHKQGRVRTCAIEKEPFTAVEAWLA 87 (118)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHTT----CCSCHHHHHHHHHHHHHTTS-EEEEEETTEEEEEECSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH----hCcCHHHHHHHHHHHHHCCC-eEEEecCCEEEEEECHHHHHHHHHHHH
Confidence 45556666666578899999998 99999999999999999996 4321100 001235656655554444
No 60
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=75.67 E-value=2.4 Score=33.17 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=34.3
Q ss_pred CCCHHH-HHHHHHHHHHcCCceeee-cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNW-WKTLAYQLISYGYLTETI-KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~-wk~li~qLi~~GyL~e~~-~~~y~~l~LT~kg~~~L~g 62 (430)
++++.- +-++++.|...|||.... +..+..+.||++|++++..
T Consensus 41 ~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~ 85 (95)
T 2pg4_A 41 GVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAEC 85 (95)
T ss_dssp CCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHHH
Confidence 378888 999999999999999431 2234568999999999864
No 61
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=75.22 E-value=2.1 Score=37.83 Aligned_cols=44 Identities=27% Similarity=0.283 Sum_probs=39.1
Q ss_pred CCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcC
Q 044490 211 KLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 211 ~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G 259 (430)
.+|+...+.+.++. +|+|..+||+. -+++..||..|+..+.++=
T Consensus 154 ~Lt~rE~~vl~~l~-~g~s~~~Ia~~----l~is~~TV~~hi~~i~~Kl 197 (215)
T 1a04_A 154 QLTPRERDILKLIA-QGLPNKMIARR----LDITESTVKVHVKHMLKKM 197 (215)
T ss_dssp GSCHHHHHHHHHHH-TTCCHHHHHHH----HTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-cCCCHHHHHHH----HCCCHHHHHHHHHHHHHHc
Confidence 47888888899998 99999999998 8999999999999987753
No 62
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=74.36 E-value=2.8 Score=33.62 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 215 AKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 215 t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+....+.++.+.+.++.+||+. -+++.+||..||..+...|.
T Consensus 27 ~r~~IL~~L~~~~~~~~ela~~----l~is~stvs~~L~~L~~~Gl 68 (106)
T 1r1u_A 27 NRIRIMELLSVSEASVGHISHQ----LNLSQSNVSHQLKLLKSVHL 68 (106)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 3445555555477899999998 99999999999999999995
No 63
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=73.95 E-value=2.2 Score=32.51 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=35.7
Q ss_pred CCchHHHHHHHHHh---cCCCHHHHhcCCCCCC-----CCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMWHE---DGLSIQKIANYPGRSA-----PIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~~~---~G~si~eIA~~~~r~R-----~L~~sTI~~HL~~~i~~G~ 260 (430)
+++.....++++.+ ...|+.||++. - +++.+||+.+|..+...|.
T Consensus 15 ~t~~r~~IL~~l~~~~~~~~s~~el~~~----l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 15 VTLPRLKILEVLQEPDNHHVSAEDLYKR----LIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp CCHHHHHHHHHHTSGGGSSBCHHHHHHH----HHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHhCCCCCCCHHHHHHH----HHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34555666776653 35899999987 5 7899999999999999995
No 64
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=73.59 E-value=2.5 Score=37.98 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=38.9
Q ss_pred CCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcC
Q 044490 211 KLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 211 ~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G 259 (430)
.+|+...+.+.++. +|+|..+||+. -+++..||..|+..+.++=
T Consensus 149 ~LT~rE~~vL~~l~-~g~s~~eIa~~----l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 149 GLTDQERTLLGLLS-EGLTNKQIADR----MFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TSCHHHHHHHHHHH-TTCCHHHHHHH----HTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH-CCCCHHHHHHH----hCCCHHHHHHHHHHHHHHh
Confidence 47788888899988 99999999998 8999999999999987653
No 65
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=73.50 E-value=2.8 Score=33.17 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 215 AKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 215 t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+....+.++.+...++.+||+. -+++.+||..||..+...|.
T Consensus 24 ~r~~Il~~L~~~~~~~~ela~~----l~is~~tvs~~L~~L~~~Gl 65 (102)
T 3pqk_A 24 VRLMLVCTLVEGEFSVGELEQQ----IGIGQPTLSQQLGVLRESGI 65 (102)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHH----HTCCTTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 4445555555467899999998 89999999999999999995
No 66
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=73.12 E-value=1.5 Score=34.50 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhhhhh--ccCCCHHHHHHHHHHHHH
Q 044490 215 AKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCD--EVGLTDEIFSAIQEAISK 287 (430)
Q Consensus 215 t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~~i~--~~~l~~e~~~~I~~a~~~ 287 (430)
+....+.++.+.+.++.+||+. -+++.+||..||..+...|. +.-.+--. ...++++.+..+...+..
T Consensus 24 ~r~~Il~~L~~~~~~~~ela~~----l~is~~tvs~~L~~L~~~Gl-v~~~~~g~~~~y~l~~~~~~~l~~~l~~ 93 (98)
T 3jth_A 24 RRLQILCMLHNQELSVGELCAK----LQLSQSALSQHLAWLRRDGL-VTTRKEAQTVYYTLKSEEVKAMIKLLHS 93 (98)
T ss_dssp HHHHHHHHTTTSCEEHHHHHHH----HTCCHHHHHHHHHHHHHTTS-EEEECCTTCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC-eEEEEeCCEEEEEECHHHHHHHHHHHHH
Confidence 3445555555467899999998 99999999999999999995 43111000 011355555555555544
No 67
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=72.89 E-value=1.9 Score=33.12 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=33.6
Q ss_pred HHHHHHHHhcC----CCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 217 YEAWKMWHEDG----LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 217 ~~T~~l~~~~G----~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
...+.++.+.| .|..|||+. -+++.+||..||..+...|.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~----Lgvs~~tV~~~L~~L~~~G~ 60 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGK----LGTPKKEINRVLYSLAKKGK 60 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHH----HCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 44555565555 899999999 99999999999999999995
No 68
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=72.87 E-value=3.4 Score=31.97 Aligned_cols=40 Identities=23% Similarity=0.202 Sum_probs=32.0
Q ss_pred HHHHHHHHhc-----CC--CHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 217 YEAWKMWHED-----GL--SIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 217 ~~T~~l~~~~-----G~--si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.+.++++++. |. |+.|||+. -+++.+||..||..+.+.|.
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~----lgvS~~TVrr~L~~Le~kG~ 53 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADA----AGLSIYQVRLYLEQLHDVGV 53 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHH----HCCCHHHHHHHHHHHHHCCc
Confidence 3444545433 44 59999999 99999999999999999996
No 69
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=72.58 E-value=4.6 Score=33.39 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|++++..
T Consensus 62 ~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 107 (143)
T 3oop_A 62 KKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTE 107 (143)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHH
T ss_pred CCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHH
Confidence 478899999999999999999762 1123468999999999874
No 70
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=72.57 E-value=5.3 Score=34.04 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee-c-C-ccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI-K-D-VYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~-~-~-~y~~l~LT~kg~~~L~g 62 (430)
.+++..+-++++.|...|||.... . + ....|.||++|++++..
T Consensus 57 ~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~ 102 (151)
T 4aik_A 57 GIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQ 102 (151)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHH
Confidence 478899999999999999998763 1 1 12368999999999874
No 71
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=72.46 E-value=4.5 Score=33.23 Aligned_cols=43 Identities=7% Similarity=0.111 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|++++..
T Consensus 58 ~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~ 103 (139)
T 3eco_A 58 QRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEA 103 (139)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHH
Confidence 478999999999999999999762 1123468999999999874
No 72
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=72.46 E-value=4.3 Score=32.40 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 217 YEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 217 ~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
...+..+...+.++.+||+. -+++.+||..||..+...|.
T Consensus 24 ~~IL~~L~~~~~~~~ela~~----l~is~~tv~~~l~~L~~~gl 63 (114)
T 2oqg_A 24 WEILTELGRADQSASSLATR----LPVSRQAIAKHLNALQACGL 63 (114)
T ss_dssp HHHHHHHHHSCBCHHHHHHH----SSSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 34444455578999999998 99999999999999999996
No 73
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=72.27 E-value=3.2 Score=34.42 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=38.0
Q ss_pred CCCchHHHHHHHHHh-cC--CCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 211 KLTPAKYEAWKMWHE-DG--LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 211 ~l~~t~~~T~~l~~~-~G--~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.++++....+..+.+ .| +|+.|||+. -+++.+||+.+|..+...|.
T Consensus 23 gLt~~e~~il~~L~~~~~~~~t~~eLa~~----l~~s~sTV~r~L~~L~~~Gl 71 (123)
T 3r0a_A 23 NLTKADLNVMKSFLNEPDRWIDTDALSKS----LKLDVSTVQRSVKKLHEKEI 71 (123)
T ss_dssp TCCHHHHHHHHHHHHSTTCCEEHHHHHHH----HTSCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 466666667765543 45 799999998 89999999999999999996
No 74
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=72.12 E-value=3.8 Score=36.76 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=38.2
Q ss_pred ccCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHH
Q 044490 209 RTKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVS 257 (430)
Q Consensus 209 ~~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~ 257 (430)
...|++..+..+.|..-+|+|..|||+. -+++.+||..++..+..
T Consensus 185 l~~L~~~~r~vl~l~~~~g~s~~EIA~~----lgis~~~V~~~~~ra~~ 229 (239)
T 1rp3_A 185 VSKLPEREKLVIQLIFYEELPAKEVAKI----LETSVSRVSQLKAKALE 229 (239)
T ss_dssp HTTSCHHHHHHHHHHHTSCCCHHHHHHH----TTSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHhcCCCHHHHHHH----hCCCHHHHHHHHHHHHH
Confidence 4567888888888865599999999999 99999999999887754
No 75
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=71.66 E-value=7.6 Score=31.90 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=34.6
Q ss_pred chHHHHHHHH--HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 214 PAKYEAWKMW--HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 214 ~t~~~T~~l~--~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++....+.++ ...+.|+.+||+. -+++.+||..||..+...|.
T Consensus 26 ~~~~~il~~L~~~~~~~t~~ela~~----l~~~~stvs~~l~~L~~~G~ 70 (152)
T 1ku9_A 26 KSVGAVYAILYLSDKPLTISDIMEE----LKISKGNVSMSLKKLEELGF 70 (152)
T ss_dssp HHHHHHHHHHHHCSSCEEHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHcCCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 3444444443 2368999999999 99999999999999999996
No 76
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=71.47 E-value=4.6 Score=34.20 Aligned_cols=43 Identities=7% Similarity=0.113 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee--c-CccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI--K-DVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~--~-~~y~~l~LT~kg~~~L~g 62 (430)
.+++..+-++++.|...|||.... . .....|.||++|++++..
T Consensus 62 ~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 107 (147)
T 4b8x_A 62 MVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEA 107 (147)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHH
Confidence 478999999999999999999763 1 112368999999999864
No 77
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=71.34 E-value=3.2 Score=32.34 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcC----CCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 216 KYEAWKMWHEDG----LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 216 ~~~T~~l~~~~G----~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
....+.++.+.| .|..+||+. -+++.+||..||..+...|.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~----Lgvsr~tV~~~L~~Le~~G~ 56 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGK----LGTPKKEINRVLYSLAKKGK 56 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 345556665556 899999999 99999999999999999995
No 78
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=71.20 E-value=6.9 Score=32.30 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=39.1
Q ss_pred CCchHHHHHHHHHh-cCCCHHHHhcCCCCCC--CCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMWHE-DGLSIQKIANYPGRSA--PIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~~~-~G~si~eIA~~~~r~R--~L~~sTI~~HL~~~i~~G~ 260 (430)
++++....+.++++ ...|+.+||.. - +++.++|..||..+...|.
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~----l~~giS~~aVs~rL~~Le~~GL 58 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDR----DEIRISKSSVSRRLKKLADHDL 58 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTS----TTCCSCHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHH----HhcCCCHHHHHHHHHHHHHCCC
Confidence 56677778888864 58999999998 8 8999999999999999995
No 79
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=71.13 E-value=5.4 Score=32.58 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|++++..
T Consensus 59 ~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 104 (138)
T 1jgs_A 59 SVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQ 104 (138)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHH
Confidence 478999999999999999999762 1112358999999999874
No 80
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=70.33 E-value=20 Score=28.21 Aligned_cols=66 Identities=12% Similarity=0.144 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCeeecchHHHHHHHHhCCC---CHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 044490 113 LYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPS---TKARLANIDGVNQHLVITHGDHLLQTIRHLSQKLN 185 (430)
Q Consensus 113 L~~~L~~~R~~lA~e~~vppy~Ifsd~tL~emA~~~P~---T~~eL~~I~Gvg~~k~~kyG~~fL~~I~~~~~e~~ 185 (430)
+.+-|.+|+.. |.+.|.-.+.++ .+.+..| +.+|. +..++..++|||+.-. ..|-+.+..||++++
T Consensus 18 f~~wL~e~~~~-a~~r~~k~~~~Y-~KA~~sL-k~~P~~i~s~~e~~~L~giG~ki~----~~L~e~L~~~c~eng 86 (87)
T 2kp7_A 18 FVRWLTEWRDE-AASRGRHTRFVF-QKALRSL-QRYPLPLRSGKEAKILQHFGDRLC----RMLDEKLKQHLASGG 86 (87)
T ss_dssp HHHHHHHHHHH-HHHHTCTTHHHH-HHHHHHH-HHCCSCCCSHHHHHTCTTTCHHHH----HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHH-HHhcCchHHHHH-HHHHHHH-HhCCCCCCCHHHHHHhhcccHHHH----HHHHHHHHHHHHHcC
Confidence 44456677664 345565333322 4445445 55664 5899999999998744 456667889999876
No 81
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=70.30 E-value=4.9 Score=33.27 Aligned_cols=43 Identities=21% Similarity=0.177 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|++++..
T Consensus 61 ~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 106 (140)
T 3hsr_A 61 FLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSP 106 (140)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHH
T ss_pred CCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHH
Confidence 478999999999999999999762 1112368999999999875
No 82
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=70.16 E-value=2.9 Score=37.41 Aligned_cols=45 Identities=27% Similarity=0.203 Sum_probs=39.2
Q ss_pred cCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcC
Q 044490 210 TKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G 259 (430)
..+|+...+.+.++. +|+|..+||+. -+++..||..|+..+.+.=
T Consensus 158 ~~Lt~rE~~vL~~l~-~g~s~~~Ia~~----l~~s~~Tv~~~i~~l~~KL 202 (225)
T 3klo_A 158 AKLTKREQQIIKLLG-SGASNIEIADK----LFVSENTVKTHLHNVFKKI 202 (225)
T ss_dssp HTSCHHHHHHHHHHT-TTCCHHHHHHH----TTCCHHHHHHHHHHHTTTS
T ss_pred ccCCHHHHHHHHHHH-cCCCHHHHHHH----hCCCHHHHHHHHHHHHHHh
Confidence 357888888999988 99999999998 9999999999999986543
No 83
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=69.86 E-value=3.8 Score=33.75 Aligned_cols=43 Identities=12% Similarity=0.041 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
.+++..+-++++.|...|||.... +.....+.||++|++++..
T Consensus 64 ~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~ 109 (127)
T 2frh_A 64 NYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIES 109 (127)
T ss_dssp SSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 367888999999999999998752 1223468999999999874
No 84
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=69.52 E-value=4.8 Score=31.32 Aligned_cols=44 Identities=20% Similarity=0.395 Sum_probs=35.5
Q ss_pred CchHHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 213 TPAKYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 213 ~~t~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++.....+..+ ...+.|+.+||+. -+++.+||..||..+...|.
T Consensus 19 ~~~~~~il~~l~~~~~~s~~ela~~----l~is~~tv~~~l~~L~~~gl 63 (109)
T 1sfx_A 19 KPSDVRIYSLLLERGGMRVSEIARE----LDLSARFVRDRLKVLLKRGF 63 (109)
T ss_dssp CHHHHHHHHHHHHHCCBCHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHH----HCCCHHHHHHHHHHHHHCCC
Confidence 34444455544 3378999999999 99999999999999999996
No 85
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=68.30 E-value=6.1 Score=32.32 Aligned_cols=43 Identities=7% Similarity=0.023 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|+.++..
T Consensus 61 ~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~ 106 (141)
T 3bro_A 61 SIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETI 106 (141)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHH
Confidence 478999999999999999998762 1122368999999988764
No 86
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=68.07 E-value=6.2 Score=33.97 Aligned_cols=43 Identities=7% Similarity=0.099 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
.+++.-+-++++.|...|||.... +.....|.||++|++++..
T Consensus 79 ~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~ 124 (166)
T 3deu_A 79 GIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAE 124 (166)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHH
T ss_pred CCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHH
Confidence 478999999999999999999762 1122468999999999874
No 87
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=67.87 E-value=6.2 Score=33.49 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|++++..
T Consensus 78 ~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 123 (161)
T 3e6m_A 78 VMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAE 123 (161)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHH
Confidence 478999999999999999999762 1222468999999999874
No 88
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=67.84 E-value=7.7 Score=31.83 Aligned_cols=43 Identities=9% Similarity=0.070 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|+.++..
T Consensus 63 ~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 108 (146)
T 2fbh_A 63 GVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIAD 108 (146)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHH
Confidence 478999999999999999999862 1122468999999999874
No 89
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=67.83 E-value=3.5 Score=36.14 Aligned_cols=44 Identities=23% Similarity=0.104 Sum_probs=38.4
Q ss_pred CCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcC
Q 044490 211 KLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 211 ~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G 259 (430)
.+++...+.+.++. +|+|..+||+. -+++..||..|+..+.+.=
T Consensus 142 ~Lt~rE~~vl~~l~-~g~s~~~Ia~~----l~is~~TV~~~~~~i~~Kl 185 (208)
T 1yio_A 142 SLTGREQQVLQLTI-RGLMNKQIAGE----LGIAEVTVKVHRHNIMQKL 185 (208)
T ss_dssp TSCHHHHHHHHHHT-TTCCHHHHHHH----HTCCHHHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHH-cCCcHHHHHHH----cCCCHHHHHHHHHHHHHHh
Confidence 36677778888887 99999999998 9999999999999997764
No 90
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=67.74 E-value=5.9 Score=33.13 Aligned_cols=44 Identities=16% Similarity=0.139 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcee--ee---cCccceEEeCcchHhhhcCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTE--TI---KDVYRTVSVSQQGKQYLGSA 63 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e--~~---~~~y~~l~LT~kg~~~L~g~ 63 (430)
++++..+.++++.|...|||.. .. +.....+.||++|+.++..-
T Consensus 66 ~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~ 114 (154)
T 2qww_A 66 IITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRS 114 (154)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHH
Confidence 3689999999999999999997 41 22234799999999998753
No 91
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=67.56 E-value=6.9 Score=32.69 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGSA 63 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g~ 63 (430)
++++.-+.++++.|...|||.... +..+..+.||++|+.++..-
T Consensus 72 ~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 118 (153)
T 2pex_A 72 YLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKA 118 (153)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGGS
T ss_pred CCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHHH
Confidence 378999999999999999999762 11234689999999998754
No 92
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=67.42 E-value=6.4 Score=33.27 Aligned_cols=43 Identities=14% Similarity=0.120 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|++++..
T Consensus 75 ~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 120 (159)
T 3s2w_A 75 KIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPD 120 (159)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHH
Confidence 478999999999999999999762 1112368999999999874
No 93
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=67.26 E-value=6.6 Score=32.46 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|+.++..
T Consensus 61 ~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 106 (147)
T 2hr3_A 61 RMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYG 106 (147)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHH
Confidence 478999999999999999998762 1223468999999999874
No 94
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=67.05 E-value=5.9 Score=32.80 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+-++++.|...|||.... +.....+.||++|++++..
T Consensus 56 ~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 101 (145)
T 3g3z_A 56 SLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAP 101 (145)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHH
Confidence 478999999999999999999752 1122469999999999864
No 95
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=67.04 E-value=7.2 Score=32.39 Aligned_cols=43 Identities=5% Similarity=0.135 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|+.++..
T Consensus 65 ~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 110 (152)
T 3bj6_A 65 QMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITA 110 (152)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHH
Confidence 478999999999999999999862 1122368999999999874
No 96
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=66.54 E-value=5.4 Score=33.42 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
.+++..+.++++.|...|||.... +.....+.||++|++++..
T Consensus 66 ~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 111 (149)
T 4hbl_A 66 DLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEA 111 (149)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHH
Confidence 478999999999999999999752 1223468999999999864
No 97
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=66.54 E-value=8.1 Score=29.74 Aligned_cols=43 Identities=12% Similarity=0.045 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++.-+...++.|...||+.... +.....+.||++|.+.+..
T Consensus 41 ~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~ 86 (100)
T 1ub9_A 41 DLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKR 86 (100)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHH
Confidence 479999999999999999998652 1223468999999877653
No 98
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=66.17 E-value=4 Score=31.84 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=35.1
Q ss_pred CCchHHHHH-HHHH-hcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAW-KMWH-EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~-~l~~-~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+++.....+ .++. ..+.|+.+||+. -+++.+||..||..+...|.
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~----l~is~~tv~~~l~~L~~~g~ 65 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADI----FKLSKTTVENSLKKLIELGL 65 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 444443333 3333 468999999998 99999999999999999996
No 99
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=65.60 E-value=6.6 Score=31.39 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=29.9
Q ss_pred CCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcch
Q 044490 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINW 264 (430)
Q Consensus 227 G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~ 264 (430)
.+|..+||+. -+++.+||..||..+...|. +..
T Consensus 33 ~~s~~eLa~~----lgvs~~tV~~~L~~L~~~Gl-V~~ 65 (110)
T 1q1h_A 33 EMTDEEIANQ----LNIKVNDVRKKLNLLEEQGF-VSY 65 (110)
T ss_dssp CBCHHHHHHT----TTSCHHHHHHHHHHHHHHTS-CEE
T ss_pred CCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC-EEE
Confidence 5899999999 99999999999999999996 543
No 100
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=65.47 E-value=3.4 Score=31.97 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=32.8
Q ss_pred HHHHHHHHhc-CCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 217 YEAWKMWHED-GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 217 ~~T~~l~~~~-G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
...+..+.+. +.|+.+||+. -+++.+||..||..+...|.
T Consensus 27 ~~il~~l~~~~~~s~~ela~~----l~is~~tvs~~l~~L~~~gl 67 (99)
T 3cuo_A 27 LLILCMLSGSPGTSAGELTRI----TGLSASATSQHLARMRDEGL 67 (99)
T ss_dssp HHHHHHHTTCCSEEHHHHHHH----HCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCcCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 3444444423 6899999998 99999999999999999995
No 101
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=64.71 E-value=9.6 Score=30.70 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee-cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI-KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~-~~~y~~l~LT~kg~~~L~g 62 (430)
.+++.-..+++..|...||+.... .+.-+.+.||++|+.++..
T Consensus 47 ~l~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l~~ 90 (96)
T 2obp_A 47 QLPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALAAQ 90 (96)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHHHH
Confidence 378888999999999999999864 2333468999999999875
No 102
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=64.57 E-value=11 Score=30.21 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee-cC--ccceEEeCcchHhhhc
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI-KD--VYRTVSVSQQGKQYLG 61 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~-~~--~y~~l~LT~kg~~~L~ 61 (430)
+++..-+-..++.|...|||.... .. ....|.||++|++++.
T Consensus 39 ~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~ 83 (107)
T 2hzt_A 39 NITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEG 83 (107)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHHH
Confidence 679999999999999999999763 11 1235899999988764
No 103
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=64.57 E-value=7.8 Score=32.11 Aligned_cols=43 Identities=7% Similarity=0.082 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|++++..
T Consensus 67 ~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 112 (150)
T 2rdp_A 67 YLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEE 112 (150)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHH
Confidence 478999999999999999998752 1122368999999999874
No 104
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=64.54 E-value=9.1 Score=31.20 Aligned_cols=43 Identities=14% Similarity=0.036 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeec---CccceEEeCcchHhhh-cC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIK---DVYRTVSVSQQGKQYL-GS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~---~~y~~l~LT~kg~~~L-~g 62 (430)
++++.-+.+.++.|...|||..... .....+.||++|++++ ..
T Consensus 56 ~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~ 102 (142)
T 3bdd_A 56 QIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITN 102 (142)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 4789999999999999999987621 2234689999999999 54
No 105
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=63.91 E-value=6.9 Score=32.77 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|+.++..
T Consensus 68 ~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 113 (155)
T 3cdh_A 68 LMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAES 113 (155)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHH
Confidence 478999999999999999998752 1122468999999999875
No 106
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=63.87 E-value=7.1 Score=31.90 Aligned_cols=43 Identities=16% Similarity=0.041 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee-c-C-ccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI-K-D-VYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~-~-~-~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... . + ....+.||++|++++..
T Consensus 61 ~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 106 (142)
T 2fbi_A 61 CILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVS 106 (142)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHH
Confidence 478999999999999999998762 1 1 12358999999999874
No 107
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=63.83 E-value=8.6 Score=32.94 Aligned_cols=43 Identities=5% Similarity=0.047 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|+.++..
T Consensus 70 ~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~ 115 (168)
T 2nyx_A 70 GVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQ 115 (168)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHH
Confidence 478999999999999999998752 1222358999999999874
No 108
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=63.73 E-value=9.1 Score=31.43 Aligned_cols=43 Identities=7% Similarity=0.050 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeec---CccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIK---DVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~---~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||..... .....+.||++|+.++..
T Consensus 61 ~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~ 106 (146)
T 2gxg_A 61 FVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNK 106 (146)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHH
Confidence 4789999999999999999987621 122358999999999874
No 109
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=63.63 E-value=9.2 Score=31.39 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+..+++.|...|||.... +.....+.||++|+.++..
T Consensus 54 ~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 99 (144)
T 1lj9_A 54 KVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPI 99 (144)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHH
Confidence 478999999999999999999862 1122358999999999874
No 110
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=63.61 E-value=2.9 Score=33.79 Aligned_cols=65 Identities=12% Similarity=0.103 Sum_probs=42.8
Q ss_pred HHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhhhhh--ccCCCHHHHHHHHHHHHH
Q 044490 218 EAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCD--EVGLTDEIFSAIQEAISK 287 (430)
Q Consensus 218 ~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~~i~--~~~l~~e~~~~I~~a~~~ 287 (430)
..+.++.+.+.++.+||+. -+++.+||..||..+...|. +...+--. ..-++++.+..+...+..
T Consensus 29 ~IL~~L~~~~~s~~eLa~~----lgis~stvs~~L~~L~~~Gl-V~~~~~gr~~~y~l~~~~~~~l~~~l~~ 95 (108)
T 2kko_A 29 QILDLLAQGERAVEAIATA----TGMNLTTASANLQALKSGGL-VEARREGTRQYYRIAGEDVARLFALVQV 95 (108)
T ss_dssp HHHHHHTTCCEEHHHHHHH----HTCCHHHHHHHHHHHHHHTS-EEEEEETTEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcCHHHHHHH----HCcCHHHHHHHHHHHHHCCC-eEEEEeCCEEEEEEChHHHHHHHHHHHH
Confidence 3444455467899999998 99999999999999999996 43211000 011355555555555544
No 111
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=63.54 E-value=4.2 Score=33.55 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=34.4
Q ss_pred hHHHHHHHHH-hcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 215 AKYEAWKMWH-EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 215 t~~~T~~l~~-~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+....+.++. ..+.++.+||+. -+++.+||..||..+...|.
T Consensus 43 ~rl~IL~~L~~~~~~s~~eLa~~----l~is~stvs~~L~~L~~~Gl 85 (122)
T 1u2w_A 43 NRAKITYALCQDEELCVCDIANI----LGVTIANASHHLRTLYKQGV 85 (122)
T ss_dssp HHHHHHHHHHHSSCEEHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCCcCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 3344555554 467899999998 99999999999999999995
No 112
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=63.51 E-value=7.2 Score=32.22 Aligned_cols=43 Identities=14% Similarity=0.076 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee-cCc--cceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI-KDV--YRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~-~~~--y~~l~LT~kg~~~L~g 62 (430)
++++..+-++++.|...|||.... ..+ ...+.||++|+.++..
T Consensus 61 ~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 106 (144)
T 3f3x_A 61 FVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLE 106 (144)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHH
Confidence 478999999999999999999762 111 1258999999999874
No 113
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=63.26 E-value=5.8 Score=33.72 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee--cC-ccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI--KD-VYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~--~~-~y~~l~LT~kg~~~L~g 62 (430)
++++..+-++++.|...|||.... .+ ....|.||++|++++..
T Consensus 71 ~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 116 (162)
T 3k0l_A 71 FIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQ 116 (162)
T ss_dssp TSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHH
Confidence 367778899999999999999763 11 12368999999999874
No 114
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=62.69 E-value=5.9 Score=30.57 Aligned_cols=42 Identities=5% Similarity=0.037 Sum_probs=34.1
Q ss_pred hHHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 215 AKYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 215 t~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+....+..+ ...+.++.+||+. -+++.+||..||..+...|.
T Consensus 17 ~~~~iL~~L~~~~~~~~~ela~~----l~is~~tvs~~l~~L~~~gl 59 (100)
T 1ub9_A 17 VRLGIMIFLLPRRKAPFSQIQKV----LDLTPGNLDSHIRVLERNGL 59 (100)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHH----TTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCcCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 334444433 4478999999998 99999999999999999996
No 115
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=62.54 E-value=9.1 Score=31.78 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g 62 (430)
++++.-+.++++.|...|||... . +..+.||++|+.++..
T Consensus 33 ~vs~~tvs~~l~~Le~~Glv~r~-~--~~~~~LT~~g~~~~~~ 72 (142)
T 1on2_A 33 AVHPSSVTKMVQKLDKDEYLIYE-K--YRGLVLTSKGKKIGKR 72 (142)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEE-T--TTEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEe-e--CceEEEchhHHHHHHH
Confidence 46889999999999999999876 3 3679999999988763
No 116
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=62.51 E-value=9.7 Score=32.09 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee--cCc-cceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI--KDV-YRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~--~~~-y~~l~LT~kg~~~L~g 62 (430)
++++.-+.++++.|...|||.... .+. ...+.||++|+.++..
T Consensus 77 ~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 122 (162)
T 3cjn_A 77 VVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDR 122 (162)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 478999999999999999998752 122 2358999999999874
No 117
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=62.36 E-value=9.6 Score=31.70 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeec---CccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIK---DVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~---~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||..... .....+.||++|+.++..
T Consensus 62 ~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 107 (155)
T 1s3j_A 62 EVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEE 107 (155)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHH
Confidence 4789999999999999999987621 112368999999999874
No 118
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=62.27 E-value=5.8 Score=32.01 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=38.1
Q ss_pred ccccCcccC-CCCCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcCC
Q 044490 9 FDKLLLHGL-GKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63 (430)
Q Consensus 9 ~d~l~~fG~-Gk~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g~ 63 (430)
|....--+- --++++.-+-+=++-|+..|||... +++ +.||++|+.++...
T Consensus 30 ~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe~~-~~D---l~LT~~G~~~l~~a 81 (95)
T 1bja_A 30 FITAAEVREVHPDLGNAVVNSNIGVLIKKGLVEKS-GDG---LIITGEAQDIISNA 81 (95)
T ss_dssp TBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEEEE-TTE---EEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcccHHHHHHHHHHHHHCCCeecC-CCC---eeeCHhHHHHHHHH
Confidence 333333333 4468899999999999999999933 333 99999999999753
No 119
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=62.20 E-value=9.2 Score=33.65 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee--cC-ccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI--KD-VYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~--~~-~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... .+ ....|.||++|++++..
T Consensus 68 ~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~ 113 (189)
T 3nqo_A 68 GTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVT 113 (189)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHH
Confidence 478999999999999999999863 11 12368999999999875
No 120
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=62.18 E-value=7.8 Score=31.54 Aligned_cols=43 Identities=9% Similarity=0.109 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee-c--CccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI-K--DVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~-~--~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... . .....+.||++|+.++..
T Consensus 54 ~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~ 99 (138)
T 3bpv_A 54 HVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPL 99 (138)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHH
Confidence 478999999999999999999852 1 112358999999999874
No 121
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=62.09 E-value=9.9 Score=31.85 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|+.++..
T Consensus 69 ~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 114 (154)
T 2eth_A 69 STTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGE 114 (154)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHH
Confidence 478999999999999999998762 1122368999999999874
No 122
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=62.03 E-value=7.9 Score=31.78 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee-c--CccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI-K--DVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~-~--~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... . .....+.||++|+.++..
T Consensus 58 ~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~ 103 (145)
T 2a61_A 58 GVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEK 103 (145)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHH
Confidence 478999999999999999999862 1 112368999999999874
No 123
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=61.97 E-value=8 Score=31.90 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGSA 63 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g~ 63 (430)
++++..+.++++.|...|||.... +.....+.||++|+.++..-
T Consensus 65 ~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~~ 111 (147)
T 1z91_A 65 YLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKA 111 (147)
T ss_dssp TCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGT
T ss_pred CCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHH
Confidence 478999999999999999998752 11234689999999998754
No 124
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=61.85 E-value=8 Score=31.46 Aligned_cols=43 Identities=19% Similarity=0.144 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee-c--CccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI-K--DVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~-~--~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... . .....+.||++|+.++..
T Consensus 63 ~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 108 (140)
T 2nnn_A 63 AMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEA 108 (140)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHH
Confidence 478999999999999999998752 1 112358999999999874
No 125
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=61.40 E-value=7.7 Score=31.35 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 215 AKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 215 t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+....+..+.+.+.++.+||+. -+++.+||..||..+...|.
T Consensus 33 ~~~~il~~L~~~~~s~~ela~~----l~is~stvsr~l~~Le~~Gl 74 (119)
T 2lkp_A 33 SRLMILTQLRNGPLPVTDLAEA----IGMEQSAVSHQLRVLRNLGL 74 (119)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHH----HSSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 4445555555358999999999 99999999999999999996
No 126
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=61.30 E-value=8.2 Score=29.21 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=29.0
Q ss_pred cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 226 ~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.+.|+.|||+. -+++.+||..||..+...|.
T Consensus 13 ~~~s~~eLa~~----lgvs~~tv~r~L~~L~~~Gl 43 (81)
T 2htj_A 13 NGGKTAEIAEA----LAVTDYQARYYLLLLEKAGM 43 (81)
T ss_dssp CCCCHHHHHHH----HTSCHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 46899999998 99999999999999999996
No 127
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=61.24 E-value=9 Score=30.90 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeec-CccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIK-DVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~-~~y~~l~LT~kg~~~L~g 62 (430)
++++.-+.++++.|...|||..... ..+.++.||++|+.++..
T Consensus 39 ~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~ 82 (123)
T 1okr_A 39 DWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKT 82 (123)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHH
T ss_pred CCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHH
Confidence 4789999999999999999987622 222347899999988753
No 128
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=61.13 E-value=6.9 Score=32.29 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=39.4
Q ss_pred CCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 211 KLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 211 ~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.++++....+..+...|.++.+||+. -+++.+||..+|..+...|.
T Consensus 35 ~lt~~~~~iL~~l~~~~~t~~eLa~~----l~~s~~tvs~~l~~L~~~Gl 80 (146)
T 3tgn_A 35 ALTNTQEHILMLLSEESLTNSELARR----LNVSQAAVTKAIKSLVKEGM 80 (146)
T ss_dssp CCCHHHHHHHHHHTTCCCCHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHhCCCCHHHHHHH----HCCCHHHHHHHHHHHHHCCC
Confidence 46777766666665577999999999 99999999999999999996
No 129
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=61.02 E-value=5.7 Score=32.91 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 215 AKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 215 t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+....+.++.+.++++.+||+. -+++.+||..||..+...|.
T Consensus 47 ~rl~IL~~L~~~~~s~~ela~~----lgis~stvs~~L~~Le~~Gl 88 (122)
T 1r1t_A 47 NRLRLLSLLARSELCVGDLAQA----IGVSESAVSHQLRSLRNLRL 88 (122)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 3344555555357899999998 99999999999999999996
No 130
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=60.41 E-value=11 Score=30.37 Aligned_cols=42 Identities=5% Similarity=0.039 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee-cC--ccceEEeCcchHhhhc
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI-KD--VYRTVSVSQQGKQYLG 61 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~-~~--~y~~l~LT~kg~~~L~ 61 (430)
++++.-+-..++.|...|||.... .. ....+.||++|++++.
T Consensus 47 ~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~ 91 (112)
T 1z7u_A 47 GITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYD 91 (112)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHH
Confidence 579999999999999999999763 11 1235899999998775
No 131
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=60.38 E-value=8.5 Score=28.49 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=35.4
Q ss_pred CCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhhhhhccCCCHHHHHHHHHHHHHhCC
Q 044490 228 LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGC 290 (430)
Q Consensus 228 ~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~~i~~~~l~~e~~~~I~~a~~~~g~ 290 (430)
.|+.+||+. .|++.+||...| .|..-. .+++++..+.|..+++++|+
T Consensus 1 ~T~~diA~~----aGVS~sTVSrvL-----ng~~~~-------~~vs~et~~rI~~aa~~lgY 47 (65)
T 1uxc_A 1 MKLDEIARL----AGVSRTTASYVI-----NGKAKQ-------YRVSDKTVEKVMAVVREHNY 47 (65)
T ss_dssp CCHHHHHHH----HTSCHHHHHHHH-----HTCTTT-------TTCTTHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHH----HCcCHHHHHHHH-----cCCCCC-------CCCCHHHHHHHHHHHHHhCC
Confidence 478899998 999999997755 343100 02488899999999999886
No 132
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=59.73 E-value=3.9 Score=38.74 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=26.0
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
.+.++|.+.| .|+.+||+. -|++.+|||.|..
T Consensus 128 aa~~l~~~~G~~~~T~~~IA~~----AGvs~gtlY~yF~ 162 (311)
T 4ich_A 128 TAWRLIARRGYHNVRIHDIASE----LGTSNATIHYHFP 162 (311)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HTCCHHHHHHHCS
T ss_pred HHHHHHHHcCCccCCHHHHHHH----hCCCchhHHHhCC
Confidence 4566776666 599999998 9999999998853
No 133
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=59.47 E-value=10 Score=34.52 Aligned_cols=40 Identities=10% Similarity=0.065 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g 62 (430)
++++.-+...++.|...||+... .|..+.||++|+++...
T Consensus 31 ~vs~~tvs~~l~~Le~~GlV~r~---~~~~i~LT~~G~~~~~~ 70 (214)
T 3hrs_A 31 QVSPPAVTEMMKKLLAEELLIKD---KKAGYLLTDLGLKLVSD 70 (214)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHCCCEEEe---cCCCeEECHHHHHHHHH
Confidence 47888999999999999999876 34789999999998764
No 134
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=59.11 E-value=12 Score=30.53 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHc----CCCcchhhhhhccCCCHHHHHHHHH
Q 044490 217 YEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSE----GFDINWTRLCDEVGLTDEIFSAIQE 283 (430)
Q Consensus 217 ~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~----G~~l~~~~~i~~~~l~~e~~~~I~~ 283 (430)
.+.-.+|..+|+|-.|||.. -|++.+||..-|..+-.. +.+-+|.+. ++.|+++....++.
T Consensus 24 ~~~A~lyYv~g~tQ~eIA~~----lGiSR~~VsrlL~~Ar~~~~~~~~P~g~~rv--~v~lP~~~a~~v~~ 88 (101)
T 2w7n_A 24 IEIARGVLVDGKPQATFATS----LGLTRGAVSQAVHRVWAAFEDKNLPEGYARV--TAVLPEHQAYIVRK 88 (101)
T ss_dssp HHHHHHHHTTCCCHHHHHHH----HTCCHHHHHHHHHHHHHHHHHTCCCTTEEEE--EEEECHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH----HCCCHHHHHHHHHHHHHHHhccCCCCCeeEE--eeecCHHHHHHHHH
Confidence 33444444499999999999 999999999988887765 445555442 23467777666654
No 135
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=58.51 E-value=29 Score=28.67 Aligned_cols=93 Identities=11% Similarity=0.185 Sum_probs=55.7
Q ss_pred CchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhh-------hhhccCCCHHHHHHHHHHH
Q 044490 213 TPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTR-------LCDEVGLTDEIFSAIQEAI 285 (430)
Q Consensus 213 ~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~-------~i~~~~l~~e~~~~I~~a~ 285 (430)
+++....+..+...+.|+.+||+. -+++.+||..++..+...|. +.-.+ -.-.+.+|++=...+....
T Consensus 37 t~~q~~iL~~l~~~~~t~~eLa~~----l~~~~~~vs~~l~~Le~~Gl-v~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~ 111 (151)
T 3kp7_A 37 SAEQSHVLNMLSIEALTVGQITEK----QGVNKAAVSRRVKKLLNAEL-VKLEKPDSNTDQRLKIIKLSNKGKKYIKERK 111 (151)
T ss_dssp CHHHHHHHHHHHHSCBCHHHHHHH----HCSCSSHHHHHHHHHHHTTS-EEC-----------CCBEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCcCHHHHHHH----HCCCHHHHHHHHHHHHHCCC-EEeeCCCCCCCCCeeEEEECHhHHHHHHHHH
Confidence 334333433335589999999999 99999999999999999996 44211 0001234654444333332
Q ss_pred HHhCCCCChHHHHHhCCCCCCHHHHHHHHHH
Q 044490 286 SKVGCKDKLKPIKNELPDDITYAHIKACLVM 316 (430)
Q Consensus 286 ~~~g~~~~LkpIke~l~~~isY~~Irl~la~ 316 (430)
.. ...+.+.+-..++-.++..+...
T Consensus 112 ~~------~~~~~~~~~~~l~~~e~~~l~~~ 136 (151)
T 3kp7_A 112 AI------MSHIASDMTSDFDSKEIEKVRQV 136 (151)
T ss_dssp HH------HHHHHHHTTTTSCHHHHHHHHHH
T ss_pred HH------HHHHHHHHHhcCCHHHHHHHHHH
Confidence 22 23344555555776776655443
No 136
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=58.32 E-value=4.8 Score=33.00 Aligned_cols=43 Identities=12% Similarity=0.051 Sum_probs=35.3
Q ss_pred chHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 214 PAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 214 ~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++....+.++.....++.+||+. -+++.+||..||..+...|.
T Consensus 21 ~~r~~IL~~L~~~~~~~~eLa~~----lgis~stvs~~L~~L~~~Gl 63 (118)
T 2jsc_A 21 PTRCRILVALLDGVCYPGQLAAH----LGLTRSNVSNHLSCLRGCGL 63 (118)
T ss_dssp HHHHHHHHHHHTTCCSTTTHHHH----HSSCHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCc
Confidence 34445555565467999999998 89999999999999999995
No 137
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=58.20 E-value=7.6 Score=32.16 Aligned_cols=43 Identities=7% Similarity=0.043 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|+.++..
T Consensus 65 ~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~ 110 (148)
T 3nrv_A 65 GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHH
Confidence 478899999999999999998752 1112468999999999875
No 138
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=58.17 E-value=12 Score=27.90 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=36.0
Q ss_pred CCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhhhhhccCCCHHHHHHHHHHHHHhCC
Q 044490 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGC 290 (430)
Q Consensus 227 G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~~i~~~~l~~e~~~~I~~a~~~~g~ 290 (430)
..|+.+||+. .|++.+||...| .|.. +++++..+.|..+++++|+
T Consensus 9 ~~t~~diA~~----aGVS~sTVSr~l-----n~~~----------~vs~~t~~rV~~~a~~lgY 53 (67)
T 2l8n_A 9 AATMKDVALK----AKVSTATVSRAL-----MNPD----------KVSQATRNRVEKAAREVGY 53 (67)
T ss_dssp CCCHHHHHHH----TTCCHHHHHHTT-----TCCC----------CSCHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHH----HCCCHHHHHHHH-----cCCC----------CCCHHHHHHHHHHHHHhCC
Confidence 4689999998 999999996643 3431 2488999999999999986
No 139
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=58.13 E-value=7.4 Score=32.85 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhc-CCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 215 AKYEAWKMWHED-GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 215 t~~~T~~l~~~~-G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
....-+.++++. +.|..+||+. -+++.+||..||..+...|.
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~----lg~s~~tv~~~l~~L~~~G~ 46 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIARE----IRIPKATLSYRIKKLEKDGV 46 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHH----HTSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCc
Confidence 334455556533 5899999998 99999999999999999996
No 140
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=57.73 E-value=13 Score=29.55 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee-cCc--cceEEeCcchHhhhc
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI-KDV--YRTVSVSQQGKQYLG 61 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~-~~~--y~~l~LT~kg~~~L~ 61 (430)
+++..-+-..++.|...|||.... ..+ ...+.||++|+.++.
T Consensus 50 gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~ 94 (107)
T 2fsw_A 50 GISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLP 94 (107)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHH
T ss_pred cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHH
Confidence 489999999999999999999763 111 235899999987654
No 141
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=57.29 E-value=4.9 Score=33.27 Aligned_cols=43 Identities=5% Similarity=-0.089 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|++++..
T Consensus 62 ~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 107 (142)
T 3ech_A 62 CRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLH 107 (142)
T ss_dssp C---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHH
Confidence 367788889999999999999752 1112358999999999875
No 142
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=57.28 E-value=15 Score=29.75 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhc
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~ 61 (430)
+++..-..+.++.|...|+|... ......+.||++|+.++.
T Consensus 54 gis~~~ls~~L~~Le~~GlV~r~-~~r~~~y~LT~~G~~l~~ 94 (111)
T 3df8_A 54 GISSTILSRRIKDLIDSGLVERR-SGQITTYALTEKGMNVRN 94 (111)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEE-ESSSEEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEe-ecCcEEEEECccHHHHHH
Confidence 68999999999999999999986 332346899999998765
No 143
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=57.12 E-value=11 Score=29.25 Aligned_cols=41 Identities=2% Similarity=-0.018 Sum_probs=33.4
Q ss_pred CCCHH-HHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhc
Q 044490 20 DHSSN-WWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61 (430)
Q Consensus 20 ~ls~~-~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~ 61 (430)
+++.. .+.+.+..|..+|++... +.+-|...||++|++.+.
T Consensus 36 git~~~aVr~hL~~Le~eGlV~~~-~~gRP~w~LT~~g~~~~~ 77 (79)
T 1xmk_A 36 GLTKARDINAVLIDMERQGDVYRQ-GTTPPIWHLTDKKRERMQ 77 (79)
T ss_dssp CGGGHHHHHHHHHHHHHTTSEEEE-CSSSCEEEECHHHHTTTC
T ss_pred CCCcHHHHHHHHHHHHHCCCEEec-CCCCCCeEeCHhHHhHhc
Confidence 36777 999999999999999855 444578999999997653
No 144
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=57.01 E-value=6.9 Score=32.63 Aligned_cols=43 Identities=14% Similarity=0.240 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee--cCc-cceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI--KDV-YRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~--~~~-y~~l~LT~kg~~~L~g 62 (430)
.+++..+-++++.|...|||.... .+. ...+.||++|++++..
T Consensus 65 ~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 110 (150)
T 3fm5_A 65 GLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDD 110 (150)
T ss_dssp TCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHH
Confidence 378999999999999999998752 111 1248999999999874
No 145
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=56.79 E-value=7.3 Score=31.68 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|++++..
T Consensus 58 ~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~ 103 (139)
T 3bja_A 58 GCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQ 103 (139)
T ss_dssp SSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHH
Confidence 467788899999999999998752 1122358999999999874
No 146
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=56.55 E-value=35 Score=27.75 Aligned_cols=45 Identities=9% Similarity=0.099 Sum_probs=35.4
Q ss_pred CCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++.+....+..+...+.++.+||+. -+++.+||..+|..+...|.
T Consensus 35 l~~~~~~iL~~l~~~~~~~~ela~~----l~~s~~tvs~~l~~Le~~gl 79 (146)
T 2gxg_A 35 LSYLDFLVLRATSDGPKTMAYLANR----YFVTQSAITASVDKLEEMGL 79 (146)
T ss_dssp CCHHHHHHHHHHTTSCBCHHHHHHH----TTCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHhcCCcCHHHHHHH----hCCCchhHHHHHHHHHHCCC
Confidence 3344444444333588999999998 99999999999999999996
No 147
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=56.42 E-value=7.6 Score=31.90 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCHHHHhcCCCCCCCC---Chhh-HHHHHHHHHHcC
Q 044490 217 YEAWKMWHEDGLSIQKIANYPGRSAPI---KEQT-VVDYLLEAVSEG 259 (430)
Q Consensus 217 ~~T~~l~~~~G~si~eIA~~~~r~R~L---~~sT-I~~HL~~~i~~G 259 (430)
++...++..+.+|+.|||.+ .++ ++.. |++||..+++.-
T Consensus 14 e~Ii~lL~~~plta~ei~~~----l~i~~~~~ke~Vy~hLeHIaksl 56 (105)
T 2gmg_A 14 EKIIELLLEGDYSPSELARI----LDMRGKGSKKVILEDLKVISKIA 56 (105)
T ss_dssp HHHHHHTTTSCBCTTHHHHS----SCCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHH----hCCCCCChHHHHHHHHHHHHHHH
Confidence 34555666689999999998 888 8888 999998887654
No 148
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=56.37 E-value=15 Score=29.51 Aligned_cols=44 Identities=18% Similarity=0.107 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g~ 63 (430)
.++...+=.+++.|..+|||...-+..-.++.+|++|++.|...
T Consensus 41 ~is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~ 84 (99)
T 2co5_A 41 DISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEEL 84 (99)
T ss_dssp BCCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHH
Confidence 57899999999999999999986211224799999999998754
No 149
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=56.26 E-value=6 Score=33.86 Aligned_cols=43 Identities=16% Similarity=0.073 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee-c--CccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI-K--DVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~-~--~~y~~l~LT~kg~~~L~g 62 (430)
.+++.-+-.+++.|...|||.... . .....|.||++|++++..
T Consensus 73 ~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 118 (168)
T 3u2r_A 73 ISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKD 118 (168)
T ss_dssp ---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHH
Confidence 367788899999999999999762 1 112368999999999874
No 150
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=56.15 E-value=10 Score=31.20 Aligned_cols=43 Identities=9% Similarity=0.012 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++.-+.++++.|...|||.... +.....+.||++|+.++..
T Consensus 62 ~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~ 107 (146)
T 3tgn_A 62 NVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEE 107 (146)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHH
Confidence 478899999999999999998752 1112358999999999874
No 151
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=56.14 E-value=11 Score=31.89 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=36.8
Q ss_pred CCchHHHHHHHHHh-cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMWHE-DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~~~-~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+++....-+.++++ ...|..+||+. -+++.+||..||..+...|.
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~----lg~s~~tv~~~l~~L~~~G~ 50 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATR----AGLSVSAVQSRVRRLESRGV 50 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHH----HTSCHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 44555556666653 46899999999 99999999999999999996
No 152
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=55.80 E-value=17 Score=30.63 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeee-cCcc--ceEEeCcchHhhhc
Q 044490 19 KDHSSNWWKTLAYQLISYGYLTETI-KDVY--RTVSVSQQGKQYLG 61 (430)
Q Consensus 19 k~ls~~~wk~li~qLi~~GyL~e~~-~~~y--~~l~LT~kg~~~L~ 61 (430)
.+++..-+...++.|...|+|.... ...- -.|.||++|++++.
T Consensus 50 ~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 50 PSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp TTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred cccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHH
Confidence 3689999999999999999999863 1111 25899999998875
No 153
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=55.77 E-value=14 Score=30.42 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhc
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~ 61 (430)
++++.-+.+.++.|...|||... . ..+.||++|+.+..
T Consensus 42 ~is~~tv~~~l~~Le~~Gli~r~-~---~~~~Lt~~g~~~~~ 79 (139)
T 2x4h_A 42 KIAPSSVFEEVSHLEEKGLVKKK-E---DGVWITNNGTRSIN 79 (139)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEE-T---TEEEECHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCEEec-C---CeEEEChhHHHHHH
Confidence 37889999999999999999876 3 57999999998765
No 154
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=55.00 E-value=2.5 Score=37.90 Aligned_cols=44 Identities=7% Similarity=-0.033 Sum_probs=0.0
Q ss_pred cCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHH
Q 044490 210 TKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVS 257 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~ 257 (430)
..|++..+..+.|..-+|+|..|||+. -+++.+||..++..+..
T Consensus 197 ~~L~~~~r~vl~l~~~~g~s~~EIA~~----lgis~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 197 EELDERERLIVYLRYYKDQTQSEVASR----LGISQVQMSRLEKKILQ 240 (243)
T ss_dssp ------------------------------------------------
T ss_pred HhCCHHHHHHHHHHHhcCCCHHHHHHH----HCcCHHHHHHHHHHHHH
Confidence 456677777787743399999999999 99999999999887754
No 155
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=54.80 E-value=9.2 Score=31.38 Aligned_cols=44 Identities=2% Similarity=-0.047 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeec---CccceEEeCcchHhhhcCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIK---DVYRTVSVSQQGKQYLGSA 63 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~---~~y~~l~LT~kg~~~L~g~ 63 (430)
.+++..+.++++.|...|||..... .....+.||++|+.++..-
T Consensus 62 ~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 108 (142)
T 2bv6_A 62 ALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPEL 108 (142)
T ss_dssp TCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHH
Confidence 3678889999999999999987621 2223689999999998753
No 156
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=53.96 E-value=22 Score=27.10 Aligned_cols=42 Identities=7% Similarity=-0.057 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhc
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~ 61 (430)
++++.-+.+.++.|...|||.....+.+..+.+|+.|...+.
T Consensus 49 ~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~ 90 (99)
T 3cuo_A 49 GLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAII 90 (99)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHH
Confidence 478999999999999999998763344457899998866553
No 157
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=53.30 E-value=5.7 Score=34.23 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=25.6
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|||.|.
T Consensus 20 aA~~lf~e~G~~~~t~~~IA~~----agvsk~tlY~~F 53 (192)
T 2fq4_A 20 ASYELLLESGFKAVTVDKIAER----AKVSKATIYKWW 53 (192)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHcCcccccHHHHHHH----cCCCHHHHHHHC
Confidence 4566777665 599999998 999999999884
No 158
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=53.23 E-value=13 Score=33.99 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g 62 (430)
++++.-+.++++.|...||+... .+..+.||++|++++..
T Consensus 35 ~vs~~tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~~~ 74 (226)
T 2qq9_A 35 EQSGPTVSQTVARMERDGLVVVA---SDRSLQMTPTGRTLATA 74 (226)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEC---TTSBEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEe---CCCCeEECHHHHHHHHH
Confidence 36888999999999999999875 34679999999998764
No 159
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=53.16 E-value=9.8 Score=31.99 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|++++..
T Consensus 74 ~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 119 (162)
T 2fa5_A 74 AMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYET 119 (162)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHH
Confidence 378999999999999999998752 1112358999999999874
No 160
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=53.15 E-value=42 Score=27.02 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=28.5
Q ss_pred CCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 227 G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+.++.+||+. -+++.+||..++..+...|.
T Consensus 50 ~~~~~ela~~----l~~~~~tvs~~l~~Le~~Gl 79 (141)
T 3bro_A 50 EVLQRDLESE----FSIKSSTATVLLQRMEIKKL 79 (141)
T ss_dssp CCBHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CcCHHHHHHH----HCCCcchHHHHHHHHHHCCC
Confidence 5899999998 99999999999999999996
No 161
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=53.10 E-value=9.4 Score=29.47 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHH
Q 044490 217 YEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVS 257 (430)
Q Consensus 217 ~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~ 257 (430)
.....++. .|.|+.+||.. -+++.+||+.++..+-.
T Consensus 29 ~~~v~~~~-~g~s~~~iA~~----~gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 29 IHAIQRIH-DGESKASVARD----IGVPESTLRGWCKNEDK 64 (87)
T ss_dssp HHHHHHHH-HTCCHHHHHHH----HTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCCHHHHHHH----HCcCHHHHHHHHHHHHh
Confidence 45566675 89999999998 99999999999876543
No 162
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=52.76 E-value=35 Score=27.89 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=34.5
Q ss_pred chHHHHHHH-HHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 214 PAKYEAWKM-WHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 214 ~t~~~T~~l-~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.+....+.. +...+.|+.+||+. -+++.+||..++..+...|.
T Consensus 31 ~~q~~iL~~l~~~~~~t~~eLa~~----l~~~~~tvs~~l~~Le~~Gl 74 (145)
T 3g3z_A 31 YNLFAVLYTLATEGSRTQKHIGEK----WSLPKQTVSGVCKTLAGQGL 74 (145)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHH----HCCCHHHHHHHHHHHHHCCC
Confidence 343334333 34478999999998 99999999999999999996
No 163
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=52.49 E-value=4.7 Score=33.65 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+-.+++.|...|||.... +.....+.||++|++++..
T Consensus 68 ~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 113 (148)
T 3jw4_A 68 GRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEE 113 (148)
T ss_dssp -----CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHH
Confidence 367888899999999999998752 1112368999999999875
No 164
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=52.25 E-value=8.2 Score=30.49 Aligned_cols=41 Identities=15% Similarity=0.316 Sum_probs=32.9
Q ss_pred chHHHHH-HHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHc
Q 044490 214 PAKYEAW-KMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSE 258 (430)
Q Consensus 214 ~t~~~T~-~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~ 258 (430)
++....+ .+....+.++.+||+. -+++.+||..||..+...
T Consensus 27 ~~Rl~IL~~l~~~~~~~~~ela~~----l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 27 PMRLKIVNELYKHKALNVTQIIQI----LKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp HHHHHHHHHHHHHSCEEHHHHHHH----HTCCHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHH----HCcCHHHHHHHHHHHHHH
Confidence 3444555 4555467999999998 999999999999999766
No 165
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=52.04 E-value=14 Score=30.98 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=35.8
Q ss_pred CchHHHHHHHHHh-cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 213 TPAKYEAWKMWHE-DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 213 ~~t~~~T~~l~~~-~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++....-+.++++ ...|..+||+. -+++.+||..+|..+...|.
T Consensus 4 d~~d~~il~~L~~~~~~s~~ela~~----lg~s~~tv~~~l~~L~~~G~ 48 (144)
T 2cfx_A 4 DQIDLNIIEELKKDSRLSMRELGRK----IKLSPPSVTERVRQLESFGI 48 (144)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 3444555666653 46899999998 99999999999999999996
No 166
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=51.45 E-value=14 Score=33.20 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGSA 63 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g~ 63 (430)
.+++..+.++++.|...|||.... +.....+.||++|+.++..-
T Consensus 73 ~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~ 119 (207)
T 2fxa_A 73 VMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSL 119 (207)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHH
Confidence 468899999999999999998762 11223689999999998753
No 167
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=50.90 E-value=9.4 Score=34.66 Aligned_cols=42 Identities=7% Similarity=0.120 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 215 AKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 215 t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+....+.++....+++.+||+. -+++.+||+.||..+...|.
T Consensus 16 ~rl~IL~~L~~~~~s~~eLa~~----l~is~stvs~hLk~Le~~GL 57 (202)
T 2p4w_A 16 TRRRILFLLTKRPYFVSELSRE----LGVGQKAVLEHLRILEEAGL 57 (202)
T ss_dssp HHHHHHHHHHHSCEEHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCc
Confidence 3444555556589999999998 89999999999999999996
No 168
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=50.74 E-value=18 Score=30.25 Aligned_cols=42 Identities=17% Similarity=0.056 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee-cC--ccceEEeCcchHhhhc
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI-KD--VYRTVSVSQQGKQYLG 61 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~-~~--~y~~l~LT~kg~~~L~ 61 (430)
+++..-+-..++.|...|||.... .. ....|.||++|++++.
T Consensus 60 gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~ 104 (131)
T 1yyv_A 60 GVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSD 104 (131)
T ss_dssp TCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHH
Confidence 489999999999999999999763 11 1236899999998764
No 169
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=50.61 E-value=8.6 Score=32.77 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=25.6
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|+|.|.
T Consensus 22 aa~~l~~~~G~~~~ti~~Ia~~----agvs~~t~Y~~F 55 (203)
T 3f1b_A 22 AAVDVFSDRGFHETSMDAIAAK----AEISKPMLYLYY 55 (203)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHH----TTSCHHHHHHHC
T ss_pred HHHHHHHHcCcccccHHHHHHH----hCCchHHHHHHh
Confidence 4566777665 599999999 999999999884
No 170
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=50.27 E-value=27 Score=28.42 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=34.0
Q ss_pred chHHHHHH-HHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 214 PAKYEAWK-MWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 214 ~t~~~T~~-l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.+....+. ++...+.|+.+||+. -+++.+||..++..+...|.
T Consensus 29 ~~~~~iL~~l~~~~~~t~~~la~~----l~~s~~~vs~~l~~Le~~gl 72 (144)
T 1lj9_A 29 RGQYLYLVRVCENPGIIQEKIAEL----IKVDRTTAARAIKRLEEQGF 72 (144)
T ss_dssp TTHHHHHHHHHHSTTEEHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCcCcCHHHHHHH----HCCCHhHHHHHHHHHHHCCC
Confidence 33333443 334357899999998 99999999999999999996
No 171
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=50.14 E-value=9.4 Score=32.32 Aligned_cols=43 Identities=9% Similarity=0.078 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeec-C-ccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIK-D-VYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~-~-~y~~l~LT~kg~~~L~g 62 (430)
.+++.-+-++++.|...||++..-. + ....|.||++|++++..
T Consensus 63 ~~~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~~~ 107 (148)
T 4fx0_A 63 GVERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQK 107 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHHHH
Confidence 3678888999999999999964311 1 12358999999999875
No 172
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=49.99 E-value=10 Score=34.05 Aligned_cols=43 Identities=12% Similarity=0.221 Sum_probs=36.4
Q ss_pred chHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 214 PAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 214 ~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+.....+.++++.+.|+.+||+. -+++.+||..||..+...|.
T Consensus 20 ~~~~~IL~~L~~~~~s~~eLA~~----lglS~stv~~~l~~Le~~Gl 62 (192)
T 1uly_A 20 DTRRKILKLLRNKEMTISQLSEI----LGKTPQTIYHHIEKLKEAGL 62 (192)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 44455666666578999999998 99999999999999999996
No 173
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=49.96 E-value=15 Score=31.07 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=36.9
Q ss_pred CCchHHHHHHHHHh-cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMWHE-DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~~~-~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+++....-+.++++ ...|..+||+. -+++.+||..||..+...|.
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~----lg~s~~tv~~~l~~L~~~G~ 50 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKI----TGLAESTIHERIRKLRESGV 50 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHH----HCSCHHHHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 44555566666653 46899999999 99999999999999999996
No 174
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=49.65 E-value=9.3 Score=33.39 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhc--C-CCHHHHhcCCCCCCC-CChhhHHHHHHHHHHcCCCcc
Q 044490 215 AKYEAWKMWHED--G-LSIQKIANYPGRSAP-IKEQTVVDYLLEAVSEGFDIN 263 (430)
Q Consensus 215 t~~~T~~l~~~~--G-~si~eIA~~~~r~R~-L~~sTI~~HL~~~i~~G~~l~ 263 (430)
+....+.++... + .|+.+|+.. .+ ++.+||+.||..+...|. +.
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~----l~~lS~aTVyrhL~~L~eaGL-V~ 77 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYR----NPDETEANLRYHVDELVDRGI-VE 77 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHH----CTTSCHHHHHHHHHHHHHTTS-EE
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHh----cCCCCHHHHHHHHHHHHHCCC-eE
Confidence 444555555422 3 689999987 77 999999999999999996 44
No 175
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=49.65 E-value=16 Score=34.59 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=53.4
Q ss_pred cCCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCC-cchhhhhhccCCCHHHHHHHHHHHHHh
Q 044490 210 TKLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFD-INWTRLCDEVGLTDEIFSAIQEAISKV 288 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~-l~~~~~i~~~~l~~e~~~~I~~a~~~~ 288 (430)
..+++..++.+.|..-+|+|..|||.. -+++.+||..++..+...-.. +...-++ +.=++.....+...++..
T Consensus 110 ~~Lp~~~R~v~~L~~~eg~s~~EIA~~----lgis~~tVks~l~rA~~~Lr~~l~~rILv--VdD~~~~~~~l~~~L~~~ 183 (286)
T 3n0r_A 110 MRIAPRSRQAFLLTALEGFTPTEAAQI----LDCDFGEVERLIGDAQAEIDAELATEVLI--IEDEPVIAADIEALVREL 183 (286)
T ss_dssp HHHSCHHHHHHHHHHTTCCCHHHHHHH----HTCCHHHHHHHHHHHHHHHHTSCCCEEEE--ECCSHHHHHHHHHHHHHT
T ss_pred HhCCHHHeeEEEEEeeCCCCHHHHHHH----hCcCHHHHHHHHHHHHhhhhccCCCcEEE--EcCCHHHHHHHHHHhhcc
Confidence 456777888888876699999999999 999999999999887654211 1111122 112567777778888876
Q ss_pred CC
Q 044490 289 GC 290 (430)
Q Consensus 289 g~ 290 (430)
|.
T Consensus 184 g~ 185 (286)
T 3n0r_A 184 GH 185 (286)
T ss_dssp TC
T ss_pred Cc
Confidence 63
No 176
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=49.27 E-value=21 Score=30.34 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee--cCccceEEeCcchHhhh
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI--KDVYRTVSVSQQGKQYL 60 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~--~~~y~~l~LT~kg~~~L 60 (430)
++++.-+.+.++.|...|||.... .+....|.||++|+.++
T Consensus 48 gis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 48 GLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALF 90 (146)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHH
Confidence 579999999999999999999763 12233689999998754
No 177
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=49.16 E-value=16 Score=31.86 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=37.3
Q ss_pred CCchHHHHHHHHHhc-CCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMWHED-GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~~~~-G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+++....-+.++++. ..|..+||+. -+++.+||..+|..+...|.
T Consensus 15 ld~~d~~IL~~L~~~~~~s~~eLA~~----lglS~~tv~~~l~~L~~~G~ 60 (171)
T 2ia0_A 15 LDDLDRNILRLLKKDARLTISELSEQ----LKKPESTIHFRIKKLQERGV 60 (171)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHH----HTSCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 455555666666534 6899999999 99999999999999999996
No 178
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=48.98 E-value=14 Score=39.27 Aligned_cols=47 Identities=9% Similarity=0.123 Sum_probs=41.2
Q ss_pred ccCCCchHHHHHHHHHh----cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcC
Q 044490 209 RTKLTPAKYEAWKMWHE----DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 209 ~~~l~~t~~~T~~l~~~----~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G 259 (430)
...|++..+..+.|..- +|+|..|||+. -+++.+||..|+..+...=
T Consensus 548 L~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~----lgis~~tVk~~~~rAl~kL 598 (613)
T 3iyd_F 548 LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQ----FDVTRERIRQIEAKALRKL 598 (613)
T ss_dssp TTSSCHHHHHHHHHHHTSSSCCCCSTTGGGTT----TSSCSSHHHHHHHHHHTTT
T ss_pred HHcCCHHHHHHHHHHhccCCCCCcCHHHHHHH----hCCCHHHHHHHHHHHHHHh
Confidence 45688888889998886 89999999999 9999999999999987654
No 179
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=48.69 E-value=26 Score=27.03 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=35.6
Q ss_pred CCchHHHHHHHHH-hcCCCHHHH----hcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMWH-EDGLSIQKI----ANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~~-~~G~si~eI----A~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++.+....+..+. ..+.+..+| |+. -+++.+||..+|..+...|.
T Consensus 6 lt~~q~~iL~~l~~~~~~~~~el~~~la~~----l~is~~tvs~~l~~Le~~gl 55 (99)
T 1tbx_A 6 FFYPEAIVLAYLYDNEGIATYDLYKKVNAE----FPMSTATFYDAKKFLIQEGF 55 (99)
T ss_dssp SBCHHHHHHHHHTTCTTCBHHHHHHHHHTT----SCCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHHHH----cCCCHHHHHHHHHHHHHCCC
Confidence 4555555555443 357999999 887 89999999999999999996
No 180
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=48.45 E-value=15 Score=34.34 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=39.4
Q ss_pred CCCchHHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 211 KLTPAKYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 211 ~l~~t~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.++++....+..+ .+.+.|+.+||+. -+++.+||..||..+...|.
T Consensus 149 ~L~~~~~~IL~~L~~~~~~s~~eLA~~----lglsksTv~r~L~~Le~~Gl 195 (244)
T 2wte_A 149 DYSREEMKLLNVLYETKGTGITELAKM----LDKSEKTLINKIAELKKFGI 195 (244)
T ss_dssp CCCHHHHHHHHHHHHHTCBCHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 5777776666654 4479999999999 99999999999999999996
No 181
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=48.42 E-value=34 Score=27.58 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=34.4
Q ss_pred CchHHHHHHH-HHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 213 TPAKYEAWKM-WHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 213 ~~t~~~T~~l-~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+.+....+.. +...+.++.+||+. -+++.+||..++..+...|.
T Consensus 33 t~~~~~iL~~l~~~~~~~~~~la~~----l~~~~~tvs~~l~~L~~~gl 77 (138)
T 1jgs_A 33 TAAQFKVLCSIRCAACITPVELKKV----LSVDLGALTRMLDRLVCKGW 77 (138)
T ss_dssp CHHHHHHHHHHHHHSSBCHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHH----HCCChHHHHHHHHHHHHCCC
Confidence 3333333333 34468999999998 99999999999999999996
No 182
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=48.41 E-value=36 Score=27.85 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=35.5
Q ss_pred CCchHHHHHHH-HHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKM-WHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l-~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++.+....+.. +...+.++.+||+. -+++.+||..+|..+...|.
T Consensus 40 l~~~~~~iL~~l~~~~~~t~~ela~~----l~~~~~tvs~~l~~Le~~Gl 85 (150)
T 2rdp_A 40 ITPPQFVALQWLLEEGDLTVGELSNK----MYLACSTTTDLVDRMERNGL 85 (150)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHH----HCCCchhHHHHHHHHHHCCC
Confidence 44444444443 34468999999998 99999999999999999996
No 183
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=48.29 E-value=20 Score=30.10 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=36.4
Q ss_pred CCchHHHHHHHHHh-cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMWHE-DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~~~-~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+++....-+.++++ ...|..+||+. -+++.+||..++..+...|.
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~----lg~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADI----LNTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHH----TTSCHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 34444556666653 46899999999 99999999999999999996
No 184
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=48.27 E-value=16 Score=30.81 Aligned_cols=45 Identities=7% Similarity=0.024 Sum_probs=36.6
Q ss_pred CCchHHHHHHHHHh-cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMWHE-DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~~~-~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+++....-+.++++ ...|..+||+. -+++.+||..||..+...|.
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~----lg~s~~tv~~~l~~L~~~G~ 51 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQ----FGVSPETIHVRVEKMKQAGI 51 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHH----HTSCHHHHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHH----HCcCHHHHHHHHHHHHHcCC
Confidence 34455566666653 46899999999 99999999999999999996
No 185
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=48.01 E-value=21 Score=29.95 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g 62 (430)
++++.-+.+.++.|...|||... .+ ..+.||++|..++..
T Consensus 65 ~vs~~tvs~~l~~Le~~Glv~r~-~~--~~~~lT~~g~~~~~~ 104 (155)
T 2h09_A 65 GVSQPTVAKMLKRLATMGLIEMI-PW--RGVFLTAEGEKLAQE 104 (155)
T ss_dssp TSCHHHHHHHHHHHHHTTCEEEE-TT--TEEEECHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCEEEe-cC--CceEEChhHHHHHHH
Confidence 36889999999999999999865 33 578999999988763
No 186
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=47.64 E-value=21 Score=28.61 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee-c-Cc--cceEEeCcchHhhhcCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI-K-DV--YRTVSVSQQGKQYLGSA 63 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~-~-~~--y~~l~LT~kg~~~L~g~ 63 (430)
.++...+-.+++.|...|||.... . ++ -..+.||++|++.|...
T Consensus 37 ~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~ 84 (108)
T 3l7w_A 37 SIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYL 84 (108)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHH
T ss_pred CCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHH
Confidence 589999999999999999998762 1 21 12589999999998753
No 187
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=47.60 E-value=17 Score=33.14 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g 62 (430)
++++.-+.++++.|...|||... .+ ..+.||++|++++..
T Consensus 35 ~vs~~tvs~~l~~Le~~GlV~r~-~~--~~v~LT~~G~~~~~~ 74 (230)
T 1fx7_A 35 DQSGPTVSQTVSRMERDGLLRVA-GD--RHLELTEKGRALAIA 74 (230)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEC-TT--SCEEECHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCEEEe-CC--ccEEECHHHHHHHHH
Confidence 36889999999999999999976 33 689999999998764
No 188
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=47.28 E-value=43 Score=28.06 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=54.8
Q ss_pred CchHHHHHHH-HHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhhh-----hhccCCCHHHHHHHHHHHH
Q 044490 213 TPAKYEAWKM-WHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRL-----CDEVGLTDEIFSAIQEAIS 286 (430)
Q Consensus 213 ~~t~~~T~~l-~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~~-----i~~~~l~~e~~~~I~~a~~ 286 (430)
+.+....+.. +...+.++.+||+. -+++.+||...|..+...|. +.-..- .-.+-||++=...+..+..
T Consensus 45 t~~q~~iL~~l~~~~~~t~~eLa~~----l~~~~~tvs~~l~~Le~~Gl-v~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 119 (162)
T 3k0l_A 45 SLPQFTALSVLAAKPNLSNAKLAER----SFIKPQSANKILQDLLANGW-IEKAPDPTHGRRILVTVTPSGLDKLNQCNQ 119 (162)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHH----HTSCGGGHHHHHHHHHHTTS-EEEEECCSSSCCEEEEECHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHH----HCCCHHHHHHHHHHHHHCcC-eEecCCCCcCCeeEeEECHhHHHHHHHHHH
Confidence 3343344433 34468999999999 99999999999999999996 432110 0012347654444443333
Q ss_pred HhCCCCChHHHHHhCCCCCCHHHHHHHHHH
Q 044490 287 KVGCKDKLKPIKNELPDDITYAHIKACLVM 316 (430)
Q Consensus 287 ~~g~~~~LkpIke~l~~~isY~~Irl~la~ 316 (430)
.. ..+.+.+-..++-.++..+...
T Consensus 120 ~~------~~~~~~~~~~l~~~e~~~l~~~ 143 (162)
T 3k0l_A 120 VV------QQLEAQMLQGVDINLAFLIRNN 143 (162)
T ss_dssp HH------HHHHHHHTTTSCHHHHHHHHHH
T ss_pred HH------HHHHHHHHhCCCHHHHHHHHHH
Confidence 22 2233334445666666655443
No 189
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=47.07 E-value=8.2 Score=33.40 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=25.9
Q ss_pred HHHHHHHhcCC---CHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDGL---SIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G~---si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++|+ |+.+||+. -|++.+|||.|.
T Consensus 15 aA~~lf~~~G~~~ts~~~IA~~----aGvs~gtlY~~F 48 (197)
T 2gen_A 15 AALACFSEHGVDATTIEMIRDR----SGASIGSLYHHF 48 (197)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHH----HCCCHHHHHHHT
T ss_pred HHHHHHHHcCcccCCHHHHHHH----HCCChHHHHHHC
Confidence 45667776665 99999998 999999999885
No 190
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=46.95 E-value=30 Score=29.23 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCHHHHhcCCCCCCCC-ChhhHHHHHHH
Q 044490 217 YEAWKMWHEDGLSIQKIANYPGRSAPI-KEQTVVDYLLE 254 (430)
Q Consensus 217 ~~T~~l~~~~G~si~eIA~~~~r~R~L-~~sTI~~HL~~ 254 (430)
...+.++. .|.|+.+||.. -++ +.+||+.++.+
T Consensus 19 e~I~~~i~-~G~sl~~i~~~----~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 19 DDICSLLS-SGESLLKVCKR----PGMPDKSTVFRWLAK 52 (140)
T ss_dssp HHHHHHHH-TTCCHHHHHTS----TTCCCHHHHHHHHHH
T ss_pred HHHHHHHH-CCCcHHHHHhc----CCCCCHHHHHHHHHc
Confidence 45666666 99999999998 889 89999999866
No 191
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=46.87 E-value=36 Score=27.61 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=35.5
Q ss_pred CCchHHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++.+....+..+ ...+.++.+||+. -+++.+||..++..+...|.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~----l~~s~~tvs~~l~~L~~~gl 76 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVL----LGVAKSTVTGLVKRLEADGY 76 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHH----HCCCchhHHHHHHHHHHCCC
Confidence 344444444433 3468999999998 99999999999999999996
No 192
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=46.85 E-value=7.9 Score=32.51 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||.... +.....+.||++|+.++..
T Consensus 73 ~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 118 (160)
T 3boq_A 73 KVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQ 118 (160)
T ss_dssp SSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHH
Confidence 356777888999999999998752 1122358999999999874
No 193
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=46.82 E-value=12 Score=31.88 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=26.0
Q ss_pred HHHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 217 YEAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 217 ~~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
..+.++|.+.| .|+.+||+. -|++.+||+.|.
T Consensus 14 ~aA~~lf~~~G~~~~t~~~IA~~----agvs~~tlY~~F 48 (192)
T 2zcm_A 14 DNAITLFSEKGYDGTTLDDISKS----VNIKKASLYYHY 48 (192)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHH----TTCCHHHHHHHT
T ss_pred HHHHHHHHHcCcccCCHHHHHHH----hCCChHHHHHHC
Confidence 34566776665 689999999 999999999885
No 194
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=46.75 E-value=14 Score=30.95 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=34.3
Q ss_pred CCchHHHHHHHHHhc---CCCHHHHhcCCCC-CCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMWHED---GLSIQKIANYPGR-SAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~~~~---G~si~eIA~~~~r-~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+|+.....++++.+. -+|.+||.+.-+. .-+++.+|||.+|..+...|.
T Consensus 16 ~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 16 VTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp CCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 455556667766532 3688888765111 126899999999999999995
No 195
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=46.71 E-value=47 Score=26.99 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=35.2
Q ss_pred CchHHHHHHHHH--hcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 213 TPAKYEAWKMWH--EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 213 ~~t~~~T~~l~~--~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+.+....+..+. ..+.++.+||+. -+++.+||..++..+...|.
T Consensus 34 ~~~~~~iL~~l~~~~~~~~~~~la~~----l~i~~~~vs~~l~~Le~~gl 79 (147)
T 2hr3_A 34 QFSQLVVLGAIDRLGGDVTPSELAAA----ERMRSSNLAALLRELERGGL 79 (147)
T ss_dssp HHHHHHHHHHHHHTTSCBCHHHHHHH----TTCCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHH----hCCChhhHHHHHHHHHHCCC
Confidence 344444444443 468999999999 99999999999999999996
No 196
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=46.62 E-value=25 Score=28.35 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=36.8
Q ss_pred CCchHHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcc
Q 044490 212 LTPAKYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDIN 263 (430)
Q Consensus 212 l~~t~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~ 263 (430)
++.+....+..+ ...+.++.+||+. -+++.+||..+|..+...|. +.
T Consensus 36 l~~~~~~iL~~l~~~~~~t~~ela~~----l~~~~~tvs~~l~~L~~~gl-v~ 83 (140)
T 2nnn_A 36 LTPTQWAALVRLGETGPCPQNQLGRL----TAMDAATIKGVVERLDKRGL-IQ 83 (140)
T ss_dssp CCHHHHHHHHHHHHHSSBCHHHHHHH----TTCCHHHHHHHHHHHHHTTC-EE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHH----HCCCHHHHHHHHHHHHHCCC-EE
Confidence 444444444443 4468999999998 99999999999999999996 44
No 197
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=46.54 E-value=9.4 Score=32.28 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|+|.|.
T Consensus 10 aA~~lf~~~Gy~~~s~~~Ia~~----agvskgtlY~~F 43 (179)
T 2eh3_A 10 VSKELFFEKGYQGTSVEEIVKR----ANLSKGAFYFHF 43 (179)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHcCCccCCHHHHHHH----hCCCcHHHHHHc
Confidence 3556776665 589999998 999999999885
No 198
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=46.36 E-value=57 Score=26.85 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=56.8
Q ss_pred CchHHHHHHHHH-hcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhh-----hhhccCCCHHHHHHHHHHHH
Q 044490 213 TPAKYEAWKMWH-EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTR-----LCDEVGLTDEIFSAIQEAIS 286 (430)
Q Consensus 213 ~~t~~~T~~l~~-~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~-----~i~~~~l~~e~~~~I~~a~~ 286 (430)
+.+....+..+. ..+.++.+||+. -+++.+||..+|..+...|. +.-.. -...+-+|+.=...+.....
T Consensus 42 t~~~~~iL~~l~~~~~~t~~ela~~----l~i~~~tvs~~l~~Le~~Gl-v~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 116 (155)
T 3cdh_A 42 RVPEWRVLACLVDNDAMMITRLAKL----SLMEQSRMTRIVDQMDARGL-VTRVADAKDKRRVRVRLTDDGRALAESLVA 116 (155)
T ss_dssp CHHHHHHHHHHSSCSCBCHHHHHHH----TTCCHHHHHHHHHHHHHTTS-EEECC------CCCEEECHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHH----HCCCHHHHHHHHHHHHHCCC-EEeccCCCcCCeeEeEECHHHHHHHHHHHH
Confidence 344444444443 357899999998 99999999999999999996 43211 00002246654444433333
Q ss_pred HhCCCCChHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 044490 287 KVGCKDKLKPIKNELPDDITYAHIKACLVMENCGI 321 (430)
Q Consensus 287 ~~g~~~~LkpIke~l~~~isY~~Irl~la~~~~~~ 321 (430)
... .-...+.+.++++ ....+.-++..+...+
T Consensus 117 ~~~--~~~~~~~~~l~~~-e~~~l~~~l~~l~~~l 148 (155)
T 3cdh_A 117 SAR--AHETRLLSALADT-DAARIKGVLRTLLDVL 148 (155)
T ss_dssp HHH--HHHHHHHHHTTTS-GGGGHHHHHHHHHHHT
T ss_pred HHH--HHHHHHHhcCCHH-HHHHHHHHHHHHHHHh
Confidence 321 2234455666653 3344444444444333
No 199
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=46.32 E-value=8 Score=30.22 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=31.8
Q ss_pred HHHHHHHHhc-CCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 217 YEAWKMWHED-GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 217 ~~T~~l~~~~-G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.....++.+. |.|+.+||.. -|++.+||+.++..+-..|.
T Consensus 12 ~~~v~~~~~~~g~s~~~ia~~----~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 12 RDAVALYENSDGASLQQIAND----LGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp HHHHHHHTTGGGSCHHHHHHH----HTSCHHHHHHHHHHHCCCST
T ss_pred HHHHHHHHHcCCChHHHHHHH----HCcCHHHHHHHHHHHhhcCc
Confidence 3445566435 9999999998 99999999999988876553
No 200
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=46.15 E-value=12 Score=31.91 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=25.5
Q ss_pred HHHHHHHhcC--CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG--LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G--~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+|||.|.
T Consensus 23 aA~~lf~~~G~~~s~~~IA~~----agvs~~tlY~~F 55 (194)
T 2q24_A 23 AAVRVFSEEGLDAHLERIARE----AGVGSGTLYRNF 55 (194)
T ss_dssp HHHHHHHHHCTTCCHHHHHHH----TTCCHHHHHHHC
T ss_pred HHHHHHHhcCcCCCHHHHHHH----hCCChHHHHHHc
Confidence 4566777666 499999998 999999999884
No 201
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=45.75 E-value=10 Score=33.37 Aligned_cols=45 Identities=9% Similarity=0.070 Sum_probs=37.9
Q ss_pred cCCCchHHHHHHHHHhcC----CCHHHHhcCCCCCCC---CChhhHHHHHHHHHHcC
Q 044490 210 TKLTPAKYEAWKMWHEDG----LSIQKIANYPGRSAP---IKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~~G----~si~eIA~~~~r~R~---L~~sTI~~HL~~~i~~G 259 (430)
..+|+...+-+.++. +| +|.++||+. -. ++..||..|+..+.+.=
T Consensus 144 ~~Lt~rE~~vl~~l~-~~~~~~~s~~~Ia~~----l~~~~~s~~tv~~~i~~l~~Kl 195 (220)
T 1p2f_A 144 IHLPKKEFEILLFLA-ENAGKVVTREKLLET----FWEDPVSPRVVDTVIKRIRKAI 195 (220)
T ss_dssp CCCCHHHHHHHHHHH-HTTTSCEEHHHHHHH----HCSSCCCTHHHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHH-HCCCceEcHHHHHHH----HhCCCCCcchHHHHHHHHHHHH
Confidence 347888888888888 88 999999998 66 88999999999887653
No 202
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=45.70 E-value=9.4 Score=31.80 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHcCCceee----e-cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTET----I-KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~----~-~~~y~~l~LT~kg~~~L~g 62 (430)
++++..+.++++.|...|||... - +.....+.||++|+.++..
T Consensus 62 ~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~ 109 (151)
T 3kp7_A 62 GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKE 109 (151)
T ss_dssp CSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHH
Confidence 36778889999999999999962 0 1223468999999999874
No 203
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=45.66 E-value=9.2 Score=32.98 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=26.1
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
.+.++|.++| .|+.+||+. -|++.+|+|.|..
T Consensus 20 aA~~lf~~~G~~~~s~~~IA~~----aGvs~~tlY~~F~ 54 (197)
T 2hyt_A 20 TARKVFSERGYADTSMDDLTAQ----ASLTRGALYHHFG 54 (197)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHH----HTCCTTHHHHHHS
T ss_pred HHHHHHHHhCcccCCHHHHHHH----hCCCHHHHHHHcC
Confidence 4556776665 599999999 9999999999964
No 204
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=45.38 E-value=21 Score=30.54 Aligned_cols=45 Identities=11% Similarity=0.199 Sum_probs=37.3
Q ss_pred CCchHHHHHHHHHh-cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMWHE-DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~~~-~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+++....-+.++++ ...|..+||+. -+++.+||..||..+...|.
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~----lg~s~~tv~~~l~~L~~~G~ 53 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSER----VALSPSPCLRRLKQLEDAGI 53 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHH----HTSCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 45555666666653 36899999998 99999999999999999996
No 205
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=45.27 E-value=20 Score=29.63 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=33.8
Q ss_pred hHHHHHHHHHh-cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 215 AKYEAWKMWHE-DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 215 t~~~T~~l~~~-~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
....-+..++. ...|..+||+. -+++.+||..+|..+...|.
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~----lg~s~~tv~~~l~~L~~~G~ 47 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKK----LGISETAVRKRVKALEEKGI 47 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHH----HTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 33444555543 46899999998 99999999999999999996
No 206
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=45.16 E-value=53 Score=26.70 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=34.4
Q ss_pred CCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++++....+..+...|.++.+||+. -+++.+||..+|..+...|.
T Consensus 35 lt~~~~~iL~~l~~~~~~~~~la~~----l~~~~~tvs~~l~~Le~~Gl 79 (144)
T 3f3x_A 35 LSYLDFSILKATSEEPRSMVYLANR----YFVTQSAITAAVDKLEAKGL 79 (144)
T ss_dssp CCHHHHHHHHHHHHSCEEHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHH----HCCChhHHHHHHHHHHHCCC
Confidence 3344444444443344499999998 99999999999999999996
No 207
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=45.14 E-value=21 Score=28.85 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=35.5
Q ss_pred CCchHHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+++.....+..+ ...+.++.+||+. -+++.+||..++..+...|.
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~----l~~s~~tvs~~l~~L~~~gl 72 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATF----FHVDKGTIARTLRRLEESGF 72 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHH----HCCCHHHHHHHHHHHHHCCC
Confidence 344444444444 3368999999998 99999999999999999996
No 208
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=45.08 E-value=30 Score=27.19 Aligned_cols=42 Identities=7% Similarity=-0.154 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhc
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLG 61 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~ 61 (430)
++++.-+.+.++.|...|||.....+....+.+|++|...+.
T Consensus 45 ~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~ 86 (114)
T 2oqg_A 45 PVSRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTA 86 (114)
T ss_dssp SSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHH
Confidence 478999999999999999998752233456899999987664
No 209
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=45.00 E-value=35 Score=28.15 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=31.5
Q ss_pred HHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 222 MWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 222 l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++...+.++.+||+. -+++.+||..++..+...|.
T Consensus 50 l~~~~~~~~~eLa~~----l~~~~~~vs~~l~~L~~~Gl 84 (149)
T 4hbl_A 50 LWEENPQTLNSIGRH----LDLSSNTLTPMLKRLEQSGW 84 (149)
T ss_dssp HHHSSSEEHHHHHHH----HTCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCHHHHHHH----HCCCHHHHHHHHHHHHHCCC
Confidence 344578999999998 99999999999999999996
No 210
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=44.73 E-value=36 Score=28.38 Aligned_cols=35 Identities=26% Similarity=0.603 Sum_probs=31.4
Q ss_pred HHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 222 MWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 222 l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++...|.++.+||+. -+++.+||...+..+...|.
T Consensus 59 l~~~~~~t~~eLa~~----l~~~~~tvs~~l~~Le~~Gl 93 (159)
T 3s2w_A 59 LYREDGINQESLSDY----LKIDKGTTARAIQKLVDEGY 93 (159)
T ss_dssp HHHSCSEEHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred HHHCCCCCHHHHHHH----HCCCHHHHHHHHHHHHHCCC
Confidence 345468999999998 99999999999999999996
No 211
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=44.70 E-value=10 Score=33.00 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=25.9
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|||.|.
T Consensus 19 aA~~lf~~~G~~~~s~~~IA~~----aGvskgtlY~~F 52 (210)
T 2wui_A 19 AAERVFLEKGVGTTAMADLADA----AGVSRGAVYGHY 52 (210)
T ss_dssp HHHHHHHHSCTTTCCHHHHHHH----HTSCHHHHHHHC
T ss_pred HHHHHHHHcCccccCHHHHHHH----hCCCHHHHHHHc
Confidence 4567787665 699999998 999999999884
No 212
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=44.64 E-value=22 Score=28.84 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=34.8
Q ss_pred CchHHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 213 TPAKYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 213 ~~t~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+.+....+..+ ...+.++.+||+. -+++.+||..++..+...|.
T Consensus 30 ~~~~~~iL~~l~~~~~~~~~ela~~----l~is~~~vs~~l~~L~~~gl 74 (142)
T 3bdd_A 30 SLTRYSILQTLLKDAPLHQLALQER----LQIDRAAVTRHLKLLEESGY 74 (142)
T ss_dssp CHHHHHHHHHHHHHCSBCHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHH----HCCCHHHHHHHHHHHHHCCC
Confidence 34444444433 3478999999998 99999999999999999996
No 213
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=44.42 E-value=46 Score=27.81 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=30.9
Q ss_pred HHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 223 WHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 223 ~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+...+.++.+||+. -+++.+||..+|..+...|.
T Consensus 63 ~~~~~~t~~eLa~~----l~~~~~~vs~~l~~Le~~Gl 96 (161)
T 3e6m_A 63 SAYGELTVGQLATL----GVMEQSTTSRTVDQLVDEGL 96 (161)
T ss_dssp HHHSEEEHHHHHHH----TTCCHHHHHHHHHHHHHTTS
T ss_pred HhCCCCCHHHHHHH----HCCCHHHHHHHHHHHHHCCC
Confidence 34479999999998 99999999999999999996
No 214
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=44.41 E-value=9.5 Score=33.14 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=25.5
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|||.|.
T Consensus 18 aA~~lf~~~G~~~~s~~~IA~~----aGvs~~t~Y~~F 51 (210)
T 3vib_A 18 AALETFYRKGIARTSLNEIAQA----AGVTRDALYWHF 51 (210)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHH----HTSCHHHHHHHC
T ss_pred HHHHHHHHhCcccCCHHHHHHH----HCcCHHHHHHHC
Confidence 4556777666 589999999 999999999883
No 215
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=44.24 E-value=36 Score=27.31 Aligned_cols=45 Identities=7% Similarity=0.216 Sum_probs=35.6
Q ss_pred CCchHHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++.+....+..+ ...+.++.+||+. -+++.+||..+|..+...|.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~----l~~~~~tvs~~l~~L~~~gl 76 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIEN----MGCVPSNMTTMIQRMKRDGY 76 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHH----CSSCCTTHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHH----HCCChhHHHHHHHHHHHCCC
Confidence 444444444444 3357899999998 99999999999999999996
No 216
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=44.20 E-value=11 Score=32.02 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=25.2
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|||.|.
T Consensus 11 aA~~lf~~~G~~~~s~~~IA~~----agvsk~t~Y~~F 44 (190)
T 3vpr_A 11 EAAKLFTEKGYEATSVQDLAQA----LGLSKAALYHHF 44 (190)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHH----HTCCHHHHHHHH
T ss_pred HHHHHHHHhCcccCCHHHHHHH----hCCCHHHHHHHc
Confidence 3556676665 589999998 999999999885
No 217
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=44.18 E-value=36 Score=27.91 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=35.2
Q ss_pred CCchHHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++......+..+ ...+.++.+||+. -+++.+||..+|..+...|.
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~----l~~~~~~vs~~l~~Le~~Gl 83 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAA----LQMKRQYISRILQEVQRAGL 83 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHH----HCCCHHHHHHHHHHHHHCCC
Confidence 334444444444 3368999999999 99999999999999999996
No 218
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=44.09 E-value=11 Score=32.67 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=26.1
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
.+.++|.+.| .|+.+||+. -|++.+|||.|..
T Consensus 16 aA~~lf~~~G~~~~s~~~IA~~----aGvs~~tiY~~F~ 50 (202)
T 2d6y_A 16 AAVAEFARHGIAGARIDRIAAE----ARANKQLIYAYYG 50 (202)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHH----HTCCHHHHHHHHS
T ss_pred HHHHHHHHcCcccCCHHHHHHH----hCCCHHHHHHHcC
Confidence 4556776666 599999998 9999999998863
No 219
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=44.08 E-value=53 Score=26.64 Aligned_cols=45 Identities=18% Similarity=0.283 Sum_probs=32.5
Q ss_pred CCchHHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++++....+..+ ...+.++.+||+. -+++.+||..++..+...|.
T Consensus 35 lt~~~~~vL~~l~~~~~~t~~eLa~~----l~~~~~tvs~~l~~L~~~Gl 80 (142)
T 3ech_A 35 LTPPDVHVLKLIDEQRGLNLQDLGRQ----MCRDKALITRKIRELEGRNL 80 (142)
T ss_dssp CCHHHHHHHHHHHHTTTCCHHHHHHH----HC---CHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHH----hCCCHHHHHHHHHHHHHCCC
Confidence 344444444433 4468999999998 99999999999999999996
No 220
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=44.04 E-value=14 Score=31.20 Aligned_cols=32 Identities=9% Similarity=0.130 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
.+.++|.++| .|+.+||+. -|++.+|++.|..
T Consensus 10 aa~~l~~~~G~~~~ti~~Ia~~----agvs~~t~Y~~F~ 44 (194)
T 3bqz_B 10 VAKELFIKNGYNATTTGEIVKL----SESSKGNLYYHFK 44 (194)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHH----TTCCHHHHHHHTS
T ss_pred HHHHHHHHcCCccCCHHHHHHH----hCCCchhHHHhCC
Confidence 3455666554 699999999 9999999998853
No 221
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=43.89 E-value=12 Score=32.03 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=26.7
Q ss_pred HHHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 217 YEAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 217 ~~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
..+.++|.++| .|+.+||+. -|++.+|+|.|..
T Consensus 24 ~aa~~l~~~~G~~~~ti~~Ia~~----agvs~~t~Y~~F~ 59 (207)
T 2rae_A 24 TVGIELFTEQGFDATSVDEVAEA----SGIARRTLFRYFP 59 (207)
T ss_dssp HHHHHHHHHHCTTTSCHHHHHHH----TTSCHHHHHHHCS
T ss_pred HHHHHHHHHcCcccCCHHHHHHH----hCCCcchHhhhCC
Confidence 34566777665 699999999 9999999998864
No 222
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=43.77 E-value=36 Score=29.23 Aligned_cols=43 Identities=12% Similarity=0.239 Sum_probs=33.7
Q ss_pred chHHHHHHHHHhcC----CCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 214 PAKYEAWKMWHEDG----LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 214 ~t~~~T~~l~~~~G----~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
......+..+...| .++.+||+. -+++.+||..+|..+...|.
T Consensus 69 ~~~~~iL~~L~~~~~~~~~t~~eLa~~----l~is~~tvs~~l~~Le~~Gl 115 (181)
T 2fbk_A 69 AAGWDLLLTLYRSAPPEGLRPTELSAL----AAISGPSTSNRIVRLLEKGL 115 (181)
T ss_dssp HHHHHHHHHHHHHCCSSCBCHHHHHHH----CSCCSGGGSSHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHH----HCCCHHHHHHHHHHHHHCcC
Confidence 34444444443233 899999998 99999999999999999996
No 223
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=43.51 E-value=10 Score=32.42 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+|+|.|.
T Consensus 20 aa~~l~~~~G~~~~t~~~Ia~~----agvs~~t~Y~~F 53 (202)
T 3lwj_A 20 CSLDLFIEKGYYNTSIRDIIAL----SEVGTGTFYNYF 53 (202)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHH----HCSCHHHHHHHC
T ss_pred HHHHHHHHcCcccCCHHHHHHH----hCCCchhHHHHc
Confidence 4556776666 699999999 999999999884
No 224
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=43.37 E-value=42 Score=27.64 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=36.0
Q ss_pred CCchHHHHHHH-HHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcc
Q 044490 212 LTPAKYEAWKM-WHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDIN 263 (430)
Q Consensus 212 l~~t~~~T~~l-~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~ 263 (430)
++.+....+.. +...+.|+.+||+. -+++.+||..++..+...|. +.
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~----l~~~~~tvs~~l~~Le~~Gl-v~ 86 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKR----LIITGSSAAANVDGLISLGL-VV 86 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHH----HTCCHHHHHHHHHHHHHTTS-EE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHH----HCCCHHHHHHHHHHHHHCCC-EE
Confidence 34444444443 34357899999998 99999999999999999996 44
No 225
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=43.35 E-value=11 Score=33.36 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=37.0
Q ss_pred CchHHHHHHHHHhcCCCHHHHhcCCCCCCC-CChhhHHHHHHHHHHcCC
Q 044490 213 TPAKYEAWKMWHEDGLSIQKIANYPGRSAP-IKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 213 ~~t~~~T~~l~~~~G~si~eIA~~~~r~R~-L~~sTI~~HL~~~i~~G~ 260 (430)
.|+....+.++.+..+++.+||+. -+ ++.+||+-||..+...|.
T Consensus 22 ~P~Rl~il~~L~~~~~~~~~l~~~----l~~~~~~~~s~Hl~~L~~agl 66 (182)
T 4g6q_A 22 HPLRWRITQLLIGRSLTTRELAEL----LPDVATTTLYRQVGILVKAGV 66 (182)
T ss_dssp SHHHHHHHHHTTTSCEEHHHHHHH----CTTBCHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHhCCCCHHHHHHH----hcCCCHHHHHHHHHHHHHCCC
Confidence 456667777777689999999986 64 899999999999999995
No 226
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=43.34 E-value=21 Score=31.72 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=34.3
Q ss_pred CCchHHHHHHHH----HhcC--CCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMW----HEDG--LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~----~~~G--~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+|+...+.++.. .+.| .|+.|||+. -+++.+||..||..+.+.|.
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~s~~eia~~----lgl~~~tv~~~l~~Le~~G~ 53 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPPSVREIARR----FRITPRGALLHLIALEKKGY 53 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHH----HTSCHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCHHHHHHH----cCCCcHHHHHHHHHHHHCCC
Confidence 344444444433 3245 699999998 99999999999999999996
No 227
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=43.26 E-value=10 Score=32.78 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=25.7
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|+|.|.
T Consensus 18 aA~~lf~~~G~~~~s~~~Ia~~----Agvskgt~Y~yF 51 (197)
T 2f07_A 18 AAIEVISEKGLDKASISDIVKK----AGTAQGTFYLYF 51 (197)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHH----HTSCHHHHHHHC
T ss_pred HHHHHHHHhCcccCCHHHHHHH----hCCCchHHHHhC
Confidence 4566777665 589999998 999999999885
No 228
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=43.25 E-value=10 Score=33.09 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|||.|.
T Consensus 16 aA~~lf~~~Gy~~~s~~~IA~~----AGvs~gt~Y~yF 49 (206)
T 1vi0_A 16 AAVEVIAENGYHQSQVSKIAKQ----AGVADGTIYLYF 49 (206)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HTSCHHHHHHHC
T ss_pred HHHHHHHHhCcccCCHHHHHHH----hCCChhHHHHHc
Confidence 4556777665 599999999 999999999884
No 229
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=43.16 E-value=31 Score=28.14 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=35.8
Q ss_pred CCchHHHHHHH-HHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKM-WHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l-~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++++....+.. +...+.++.+||+. -+++.+||..++..+...|.
T Consensus 35 lt~~~~~iL~~l~~~~~~t~~eLa~~----l~~~~~~vs~~l~~L~~~Gl 80 (143)
T 3oop_A 35 VTPEQWSVLEGIEANEPISQKEIALW----TKKDTPTVNRIVDVLLRKEL 80 (143)
T ss_dssp SCHHHHHHHHHHHHHSSEEHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHH----HCCCHhhHHHHHHHHHHCCC
Confidence 44444444443 34478999999998 99999999999999999996
No 230
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=42.93 E-value=33 Score=26.20 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeec--CccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIK--DVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~--~~y~~l~LT~kg~~~L~g 62 (430)
++++.-+.+.++.|...|||..... .....+.+|++|..++..
T Consensus 45 ~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~ 89 (109)
T 1sfx_A 45 DLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKE 89 (109)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHH
Confidence 4789999999999999999987621 223467899999988764
No 231
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.90 E-value=24 Score=29.83 Aligned_cols=49 Identities=14% Similarity=0.088 Sum_probs=34.6
Q ss_pred CCchHHHHHHHHHh--cCCCHHHHhcCCCC-CCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMWHE--DGLSIQKIANYPGR-SAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~~~--~G~si~eIA~~~~r-~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+|+.....++++.+ .-+|.++|.+.-+. .-+++.+|||.+|..+...|.
T Consensus 20 ~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 20 ITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp CCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34555566666653 25788998775111 126899999999999999995
No 232
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=42.84 E-value=22 Score=32.48 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g~ 63 (430)
++++..+...++.|...||+... . +.+.||++|++++..-
T Consensus 41 gvS~~SV~~~lkkL~e~GLV~~~-~---~Gv~LTe~G~~~A~~i 80 (200)
T 2p8t_A 41 ELGEGSVRTLLRKLSHLDIIRSK-Q---RGHFLTLKGKEIRDKL 80 (200)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEC------CEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEe-C---CCeEECHHHHHHHHHH
Confidence 38899999999999999999865 2 6899999999887644
No 233
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=42.27 E-value=15 Score=31.41 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|+|.|.
T Consensus 26 aa~~l~~~~G~~~~s~~~Ia~~----agvs~~t~Y~~F 59 (212)
T 1pb6_A 26 AALDTFSQFGFHGTRLEQIAEL----AGVSKTNLLYYF 59 (212)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHH----TTSCHHHHHHHS
T ss_pred HHHHHHHHcCcchhhHHHHHHH----HCCChhHHHHhC
Confidence 4556676665 699999999 999999999883
No 234
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=42.26 E-value=16 Score=27.40 Aligned_cols=50 Identities=14% Similarity=0.297 Sum_probs=34.9
Q ss_pred CCCchHHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 211 KLTPAKYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 211 ~l~~t~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.+++.....+..+ ...+.|+.+||+.-...++++.+||..+|..+...|.
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGl 56 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGA 56 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCC
Confidence 3555555555544 3357899999986111123689999999999999996
No 235
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=42.25 E-value=13 Score=32.16 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=26.4
Q ss_pred HHHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 217 YEAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 217 ~~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
..+.++|.++| .|+.+||+. -|++.+|||.|.
T Consensus 37 ~aA~~l~~~~G~~~~t~~~IA~~----aGvs~~t~Y~~F 71 (222)
T 3bru_A 37 RAGLEHLTEKGYSSVGVDEILKA----ARVPKGSFYHYF 71 (222)
T ss_dssp HHHHHHHHHSCTTTCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHHcCCCcCcHHHHHHH----hCCCcchhhhhC
Confidence 34667787665 599999999 999999999884
No 236
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=42.25 E-value=19 Score=29.31 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=35.3
Q ss_pred CCchHHHHHHHHHhc---CCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMWHED---GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~~~~---G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++.+....+..+... +.|+.+||+. -+++.+||..++..+...|.
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~----l~~~~~tvs~~l~~Le~~Gl 76 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKA----LQRTGPTVSNLLRNLERKKL 76 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHH----hCCCcccHHHHHHHHHHCCC
Confidence 344444444444323 8999999998 99999999999999999996
No 237
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=42.19 E-value=16 Score=31.21 Aligned_cols=33 Identities=21% Similarity=0.492 Sum_probs=26.9
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLLE 254 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~~ 254 (430)
.+.++|.++| .|+.+||+. -|++.+|+|.|...
T Consensus 15 aA~~l~~~~G~~~~t~~~Ia~~----agvs~~t~Y~~F~s 50 (195)
T 2dg7_A 15 AALELYSEHGYDNVTVTDIAER----AGLTRRSYFRYFPD 50 (195)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHH----TTCCHHHHHHHCSS
T ss_pred HHHHHHHhcCccccCHHHHHHH----hCCCHHHHHHHcCC
Confidence 4566777665 799999999 99999999998643
No 238
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=42.19 E-value=24 Score=32.56 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=33.5
Q ss_pred HHHHHHHHhc--CCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 217 YEAWKMWHED--GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 217 ~~T~~l~~~~--G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
...++++.+. ++++.|||+. -+++.+||..||..+...|+
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~----~gl~~stv~r~l~~L~~~G~ 52 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEK----FNMSVSNAYKYMVVLEEKGF 52 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHH----TTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCc
Confidence 3445555533 6999999998 99999999999999999996
No 239
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=42.13 E-value=15 Score=32.86 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=36.1
Q ss_pred CCCchHHHHHHHHHhcC----CCHHHHhcCCCCCC-----CCChhhHHHHHHHHHHcC
Q 044490 211 KLTPAKYEAWKMWHEDG----LSIQKIANYPGRSA-----PIKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 211 ~l~~t~~~T~~l~~~~G----~si~eIA~~~~r~R-----~L~~sTI~~HL~~~i~~G 259 (430)
.+|+...+-+.++. +| +|.++||+. - +++..||..|+..+.+.=
T Consensus 153 ~LT~rE~~vL~~l~-~~~~~~~s~~eIa~~----lw~~~~~~s~~tV~~hi~~lr~KL 205 (238)
T 2gwr_A 153 SLTPLEFDLLVALA-RKPRQVFTRDVLLEQ----VWGYRHPADTRLVNVHVQRLRAKV 205 (238)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCBCHHHHHHH----HTCCC--CCTHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHH-HCCCceecHHHHHHH----HcCCCCCCCcccHHHHHHHHHHHh
Confidence 57888888888888 88 999999986 5 788999999999887653
No 240
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=42.11 E-value=39 Score=27.46 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeec---Cc--cceEEeCcchHhhhcCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIK---DV--YRTVSVSQQGKQYLGSA 63 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~---~~--y~~l~LT~kg~~~L~g~ 63 (430)
.++...+-..++.|..+|||..... ++ -.++.||++|++.|...
T Consensus 44 ~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~ 92 (116)
T 3f8b_A 44 ELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLA 92 (116)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHH
Confidence 6899999999999999999997521 11 13689999999999854
No 241
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=42.03 E-value=30 Score=27.71 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=30.8
Q ss_pred HHHhcCCCHHHHhcCCCCCC-CCChhhHHHHHHHHHHcCC
Q 044490 222 MWHEDGLSIQKIANYPGRSA-PIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 222 l~~~~G~si~eIA~~~~r~R-~L~~sTI~~HL~~~i~~G~ 260 (430)
+.. .+.++.+||+. - +++.+||..||..+...|.
T Consensus 31 L~~-~~~~~~eLa~~----l~~is~~tvs~~L~~Le~~Gl 65 (112)
T 1z7u_A 31 LFQ-GTKRNGELMRA----LDGITQRVLTDRLREMEKDGL 65 (112)
T ss_dssp HHH-SCBCHHHHHHH----STTCCHHHHHHHHHHHHHHTS
T ss_pred HHh-CCCCHHHHHHH----hccCCHHHHHHHHHHHHHCCC
Confidence 444 78999999998 8 9999999999999999996
No 242
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=41.53 E-value=14 Score=32.36 Aligned_cols=43 Identities=7% Similarity=0.071 Sum_probs=36.1
Q ss_pred CCCchHHHHHHHHHhcC----CCHHHHhcCCCCCCC-----CChhhHHHHHHHHHHc
Q 044490 211 KLTPAKYEAWKMWHEDG----LSIQKIANYPGRSAP-----IKEQTVVDYLLEAVSE 258 (430)
Q Consensus 211 ~l~~t~~~T~~l~~~~G----~si~eIA~~~~r~R~-----L~~sTI~~HL~~~i~~ 258 (430)
.+|+...+-+.++. +| +|..+||+. -. ++..||..|+..+.+.
T Consensus 151 ~Lt~rE~~vL~~l~-~~~~~~~s~~eIa~~----l~~~~~~~s~~tv~~hi~~l~~K 202 (225)
T 1kgs_A 151 DLTKKEYQILEYLV-MNKNRVVTKEELQEH----LWSFDDEVFSDVLRSHIKNLRKK 202 (225)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCEEHHHHHHH----CC-----CHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHH-hCCCcccCHHHHHHH----hcCCCCCCCcchHHHHHHHHHHH
Confidence 47888888888887 88 999999997 55 7899999999887654
No 243
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=41.39 E-value=16 Score=31.52 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=25.5
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|+|.|.
T Consensus 22 aA~~lf~~~G~~~~s~~~IA~~----agvs~~tlY~~F 55 (204)
T 2ibd_A 22 IAATLFAERGLRATTVRDIADA----AGILSGSLYHHF 55 (204)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHH----TTSCHHHHHHHC
T ss_pred HHHHHHHHcCchhcCHHHHHHH----hCCCchhHHHhc
Confidence 4566777655 689999999 999999999884
No 244
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=41.35 E-value=18 Score=31.09 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=26.0
Q ss_pred HHHHHHHhcC--CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG--LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G--~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+|||.|.
T Consensus 21 aA~~lf~~~G~~~t~~~IA~~----agvs~~tlY~~F 53 (196)
T 2qwt_A 21 VAYDTFAAEGLGVPMDEIARR----AGVGAGTVYRHF 53 (196)
T ss_dssp HHHHHHHHTCTTSCHHHHHHH----TTSCHHHHHHHC
T ss_pred HHHHHHHhcCCCCCHHHHHHH----hCCCHHHHHHHC
Confidence 4566777676 799999999 999999999884
No 245
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=41.32 E-value=29 Score=32.32 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g~ 63 (430)
++++.-+.++++.|...|||... . ....+.||++|+.++.-.
T Consensus 177 glsksTv~r~L~~Le~~GlV~r~-~-r~~~~~LT~~G~~l~~~~ 218 (244)
T 2wte_A 177 DKSEKTLINKIAELKKFGILTQK-G-KDRKVELNELGLNVIKLN 218 (244)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEE-T-TTTEEEECHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHCCCEEEe-C-CccEEEECHHHHHHHHHH
Confidence 47888899999999999999976 3 346799999999997643
No 246
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=41.06 E-value=19 Score=27.77 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=29.6
Q ss_pred CCCHHHHhcCCCCCCCCChhh-HHHHHHHHHHcCCCcc
Q 044490 227 GLSIQKIANYPGRSAPIKEQT-VVDYLLEAVSEGFDIN 263 (430)
Q Consensus 227 G~si~eIA~~~~r~R~L~~sT-I~~HL~~~i~~G~~l~ 263 (430)
+.++.+||+. -+++.+| |..+|..+...|. +.
T Consensus 30 ~~t~~eLa~~----l~is~~t~vs~~l~~Le~~Gl-v~ 62 (95)
T 2pg4_A 30 EPSLAEIVKA----SGVSEKTFFMGLKDRLIRAGL-VK 62 (95)
T ss_dssp CCCHHHHHHH----HCCCHHHHHTTHHHHHHHTTS-EE
T ss_pred CCCHHHHHHH----HCCCchHHHHHHHHHHHHCCC-ee
Confidence 5999999999 9999999 9999999999996 54
No 247
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=41.04 E-value=14 Score=31.64 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=26.0
Q ss_pred HHHHHHHhcCC---CHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 218 EAWKMWHEDGL---SIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 218 ~T~~l~~~~G~---si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
.+.++|.+.|+ |+.+||+. -|++.+|++.|..
T Consensus 20 aa~~l~~~~G~~~~ti~~Ia~~----agvs~~t~Y~~F~ 54 (189)
T 3vp5_A 20 ACLNEFQTHSFHEAKIMHIVKA----LDIPRGSFYQYFE 54 (189)
T ss_dssp HHHHHHHHSCTTTCCHHHHHHH----HTCCHHHHHHHCS
T ss_pred HHHHHHHHCCcccccHHHHHHH----hCCChHHHHHHCC
Confidence 45567776665 99999998 9999999998853
No 248
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=40.94 E-value=25 Score=28.38 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=35.1
Q ss_pred CCchHHHHHHH-HHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKM-WHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l-~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++.+....+.. +...+.++.+||+. -+++.+||..+|..+...|.
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~----l~~s~~~vs~~l~~Le~~gl 79 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQ----ACILRPSMTGVLARLERDGI 79 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHH----TTCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHH----HCCCHhHHHHHHHHHHHCCC
Confidence 33444444443 34468999999998 99999999999999999996
No 249
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=40.91 E-value=43 Score=27.14 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=54.1
Q ss_pred chHHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhhh-----hhccCCCHHHHHHHHHHHHH
Q 044490 214 PAKYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRL-----CDEVGLTDEIFSAIQEAISK 287 (430)
Q Consensus 214 ~t~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~~-----i~~~~l~~e~~~~I~~a~~~ 287 (430)
++....+..+ ...+.++.+||+. -+++.+||..+|..+...|. +....- .-.+.++++-...+..+.
T Consensus 37 ~~~~~iL~~l~~~~~~~~~ela~~----l~~~~~tvs~~l~~L~~~gl-i~r~~~~~d~R~~~~~lT~~G~~~~~~~~-- 109 (142)
T 2bv6_A 37 YPQFLVLTILWDESPVNVKKVVTE----LALDTGTVSPLLKRMEQVDL-IKRERSEVDQREVFIHLTDKSETIRPELS-- 109 (142)
T ss_dssp HHHHHHHHHHHHSSEEEHHHHHHH----TTCCTTTHHHHHHHHHHTTS-EEEEECSSSTTCEEEEECHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHH----HCCChhhHHHHHHHHHHCCC-EEeecCCCCcceEEEEEChHHHHHHHHHH--
Confidence 3333444433 4357899999998 99999999999999999996 432110 001224665444333222
Q ss_pred hCCCCChHHHHHhCCCCCCHHHHHHHHHH
Q 044490 288 VGCKDKLKPIKNELPDDITYAHIKACLVM 316 (430)
Q Consensus 288 ~g~~~~LkpIke~l~~~isY~~Irl~la~ 316 (430)
..+..+.+.+ .++-.++..+...
T Consensus 110 ----~~~~~~~~~~--~l~~~e~~~l~~~ 132 (142)
T 2bv6_A 110 ----NASDKVASAS--SLSQDEVKELNRL 132 (142)
T ss_dssp ----THHHHHHHHT--TCCHHHHHHHHHH
T ss_pred ----HHHHHHHHHh--CCCHHHHHHHHHH
Confidence 1233455556 5777777655443
No 250
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=40.70 E-value=9.5 Score=31.81 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=25.1
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|+|.|.
T Consensus 12 aa~~l~~~~G~~~~t~~~Ia~~----agvs~~t~Y~~F 45 (170)
T 3egq_A 12 AALRLYMKKPPHEVSIEEIARE----AKVSKSLIFYHF 45 (170)
T ss_dssp HHHHHHTTSCGGGCCHHHHHHH----HTSCHHHHHHHC
T ss_pred HHHHHHHhcCCccCcHHHHHHH----hCCCchhHHHHc
Confidence 3456676565 699999998 999999999884
No 251
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=40.65 E-value=22 Score=31.37 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=35.1
Q ss_pred HHHHHHHHHhc-C-CCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCc
Q 044490 216 KYEAWKMWHED-G-LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDI 262 (430)
Q Consensus 216 ~~~T~~l~~~~-G-~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l 262 (430)
...-+.++++. + .|..+||+. -+++.+||..+|..+...|.++
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~----l~vS~~Ti~rdi~~L~~~G~~I 67 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEE----LSVSRQVIVQDIAYLRSLGYNI 67 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHH----HTSCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHH----HCcCHHHHHHHHHHHHHCCCeE
Confidence 34556667643 4 899999999 9999999999999999988645
No 252
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=40.61 E-value=12 Score=32.31 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
...++|.+.| -|+.+||+. -|++.+|+|.|.
T Consensus 17 aA~~lf~~~G~~~~t~~~Ia~~----Agvs~gt~Y~yF 50 (204)
T 3anp_C 17 AAMELFRNRGFQETTATEIAKA----AHVSRGTFFNYY 50 (204)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHH----HTSCHHHHHHHC
T ss_pred HHHHHHHHcCcccccHHHHHHH----cCCchHHHHHHc
Confidence 4556777666 589999999 999999999885
No 253
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=40.52 E-value=70 Score=26.46 Aligned_cols=45 Identities=13% Similarity=0.235 Sum_probs=35.1
Q ss_pred chHHHHHHH-HHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcc
Q 044490 214 PAKYEAWKM-WHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDIN 263 (430)
Q Consensus 214 ~t~~~T~~l-~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~ 263 (430)
.+....+.. +...+.++.+||+. -+++.+||..+|..+...|. +.
T Consensus 49 ~~~~~iL~~l~~~~~~t~~ela~~----l~is~~tvs~~l~~Le~~gl-v~ 94 (162)
T 2fa5_A 49 IPEWRVITILALYPGSSASEVSDR----TAMDKVAVSRAVARLLERGF-IR 94 (162)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHH----HTCCHHHHHHHHHHHHHTTS-EE
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHH----HCCCHHHHHHHHHHHHHCCC-Ee
Confidence 333334433 34468999999998 99999999999999999996 44
No 254
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=40.50 E-value=11 Score=32.42 Aligned_cols=31 Identities=23% Similarity=0.180 Sum_probs=25.4
Q ss_pred HHHHHHHhcC--CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG--LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G--~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+|||.|.
T Consensus 24 aA~~lf~~~G~~~s~~~Ia~~----agvs~~t~Y~~F 56 (199)
T 2rek_A 24 AAAAEVARHGADASLEEIARR----AGVGSATLHRHF 56 (199)
T ss_dssp HHHHHHHHHGGGCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHhcCCCCCHHHHHHH----hCCchHHHHHHC
Confidence 4556776665 599999999 999999999885
No 255
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=40.49 E-value=13 Score=31.93 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=26.3
Q ss_pred HHHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 217 YEAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 217 ~~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
..+.++|.+.| .|+.+||+. -|++.+|+|.|.
T Consensus 38 ~aa~~l~~~~G~~~~tv~~Ia~~----agvs~~t~Y~~F 72 (218)
T 3dcf_A 38 KVATELFREKGYYATSLDDIADR----IGFTKPAIYYYF 72 (218)
T ss_dssp HHHHHHHHHTCTTTCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHHcCcccCcHHHHHHH----hCCCHHHHHHHc
Confidence 34566777676 689999999 999999999884
No 256
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=40.41 E-value=17 Score=33.75 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=35.3
Q ss_pred chHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 214 PAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 214 ~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++....+.++....+++.+||+. -+++.+||..||..+...|.
T Consensus 12 ~~R~~IL~~L~~g~~s~~ELa~~----lglS~stVs~hL~~Le~aGL 54 (232)
T 2qlz_A 12 KVRRDLLSHLTCMECYFSLLSSK----VSVSSTAVAKHLKIMEREGV 54 (232)
T ss_dssp HHHHHHHHHHTTTTTCSSSSCTT----CCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 34445555565467999999998 99999999999999999995
No 257
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=40.22 E-value=60 Score=27.30 Aligned_cols=45 Identities=13% Similarity=0.334 Sum_probs=32.0
Q ss_pred CCchHHHHHHHHHh---cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMWHE---DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~~~---~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++.+....+..+.. .+.++.+||+. -+++.+||..+|..+...|.
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~----l~~~~~tvs~~l~~Le~~Gl 91 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADR----LISRAPDITRLIDRLDDRGL 91 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHH----C---CTHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHH----HCCChhhHHHHHHHHHHCCC
Confidence 33444444443332 48999999999 99999999999999999996
No 258
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=40.14 E-value=16 Score=30.61 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+|+|.|.
T Consensus 16 aa~~l~~~~G~~~~ti~~Ia~~----agvs~~t~Y~~F 49 (188)
T 3qkx_A 16 ATDRLMAREGLNQLSMLKLAKE----ANVAAGTIYLYF 49 (188)
T ss_dssp HHHHHHHHSCSTTCCHHHHHHH----HTCCHHHHHHHS
T ss_pred HHHHHHHhcCcccCCHHHHHHH----hCCCcchHHHHc
Confidence 4556676665 789999999 999999999885
No 259
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=40.02 E-value=25 Score=28.77 Aligned_cols=49 Identities=22% Similarity=0.303 Sum_probs=36.3
Q ss_pred cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhhhhhccCCCHHHHHHH
Q 044490 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAI 281 (430)
Q Consensus 226 ~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~~i~~~~l~~e~~~~I 281 (430)
.+.|+.+||+. -+++.+||..+|..+...|. +.-.. ..+.+++.-....
T Consensus 30 ~~~s~~ela~~----l~is~~tv~~~l~~Le~~Gl-i~r~~--~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 30 EGAKINRIAKD----LKIAPSSVFEEVSHLEEKGL-VKKKE--DGVWITNNGTRSI 78 (139)
T ss_dssp SCBCHHHHHHH----HTCCHHHHHHHHHHHHHTTS-EEEET--TEEEECHHHHHHH
T ss_pred CCcCHHHHHHH----hCCChHHHHHHHHHHHHCCC-EEecC--CeEEEChhHHHHH
Confidence 57899999999 99999999999999999996 55332 1123465444433
No 260
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=40.00 E-value=20 Score=28.66 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=30.9
Q ss_pred HHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 222 MWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 222 l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+|...+.|..|||+.-...++++.+||..-|..+.+.|.
T Consensus 44 L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGl 82 (99)
T 2k4b_A 44 IWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEM 82 (99)
T ss_dssp HHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCC
Confidence 455578999999997332234678999999999999995
No 261
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=39.84 E-value=23 Score=31.75 Aligned_cols=44 Identities=20% Similarity=0.165 Sum_probs=36.1
Q ss_pred CCCchHHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcC
Q 044490 211 KLTPAKYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEG 259 (430)
Q Consensus 211 ~l~~t~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G 259 (430)
.++......+.+.. .|++..+||.+ -+++..||..|+..+...=
T Consensus 198 ~L~~r~~~i~~~~~-~g~~~~eia~~----l~~s~~tv~~~l~~i~~kl 241 (258)
T 3p7n_A 198 TLSPRQLEVTTLVA-SGLRNKEVAAR----LGLSEKTVKMHRGLVMEKL 241 (258)
T ss_dssp TSCHHHHHHHHHHH-TTCCHHHHHHH----HTCCHHHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHHHHHHHH
Confidence 34555566777777 99999999999 9999999999999887643
No 262
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=39.83 E-value=19 Score=30.88 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=25.1
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+..+|.+.| .|+.+||+. -|++.+|||.|.
T Consensus 18 aa~~l~~~~G~~~~ti~~Ia~~----agvs~~t~Y~~F 51 (216)
T 3s5r_A 18 AATTLFAEQGIAATTMAEIAAS----VGVNPAMIHYYF 51 (216)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHT----TTCCHHHHHHHC
T ss_pred HHHHHHHHcCcccCCHHHHHHH----HCCCHHHHHHHc
Confidence 4556676554 799999999 999999999883
No 263
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=39.77 E-value=12 Score=32.38 Aligned_cols=31 Identities=13% Similarity=0.359 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|||.|.
T Consensus 31 aA~~lf~~~G~~~~t~~~IA~~----agvs~~t~Y~~F 64 (214)
T 2zb9_A 31 AVGELLLTEGTAQLTFERVARV----SGVSKTTLYKWW 64 (214)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HCCCHHHHHHHC
T ss_pred HHHHHHHHhCcccCCHHHHHHH----HCCCHHHHHHHC
Confidence 4556777665 699999999 999999999883
No 264
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=39.73 E-value=21 Score=30.65 Aligned_cols=41 Identities=10% Similarity=0.210 Sum_probs=34.2
Q ss_pred HHHHHHHHHh-cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 216 KYEAWKMWHE-DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 216 ~~~T~~l~~~-~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
..+-+.++++ ...|..+||+. -+++++||..++..+...|.
T Consensus 5 d~~il~~L~~~~~~s~~~la~~----lg~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 5 DRKILRILQEDSTLAVADLAKK----VGLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHTTCSCSCHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 3455666653 36899999999 99999999999999999995
No 265
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=39.63 E-value=13 Score=31.90 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=25.6
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|+|.|.
T Consensus 17 aa~~l~~~~G~~~~ti~~IA~~----agvs~~t~Y~~F 50 (193)
T 2dg8_A 17 ATLDLIAEEGIARVSHRRIAQR----AGVPLGSMTYHF 50 (193)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HTSCTHHHHHHC
T ss_pred HHHHHHHHhChhhccHHHHHHH----hCCCchhhheeC
Confidence 4566776666 699999999 999999999884
No 266
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=39.39 E-value=14 Score=32.48 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=26.1
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
.+.++|.++| .|+.+||+. -|++.+|+|.|..
T Consensus 17 aA~~lf~~~Gy~~ts~~~IA~~----AGvskgtlY~~F~ 51 (215)
T 1ui5_A 17 AAADLFDRRGYESTTLSEIVAH----AGVTKGALYFHFA 51 (215)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHH----HTCCHHHHHHHCS
T ss_pred HHHHHHHHhCcccCCHHHHHHH----hCCCchhhHhhCC
Confidence 4566777665 599999999 9999999998854
No 267
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=39.21 E-value=13 Score=31.54 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=25.6
Q ss_pred HHHHHHHhcCC--CHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDGL--SIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G~--si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.|+ |+.+||+. -|++.+||+.|.
T Consensus 17 aA~~lf~~~G~~~t~~~IA~~----aGvs~~tly~~F 49 (190)
T 3jsj_A 17 AAAALTYRDGVGIGVEALCKA----AGVSKRSMYQLF 49 (190)
T ss_dssp HHHHHHHHHCTTCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHhCccccHHHHHHH----hCCCHHHHHHHc
Confidence 45667776775 99999998 999999999884
No 268
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=39.16 E-value=9.8 Score=32.83 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
...++|.++| -|+.+||+. -|++.+|+|.|.
T Consensus 22 aA~~lf~~~G~~~~s~~~Ia~~----agvs~~t~Y~yF 55 (203)
T 3ccy_A 22 RAAAMFARQGYSETSIGDIARA----CECSKSRLYHYF 55 (203)
T ss_dssp HHHHHHHHTCTTTSCHHHHHHH----TTCCGGGGTTTC
T ss_pred HHHHHHHHcCcccCCHHHHHHH----hCCCcCeeeeee
Confidence 4566787665 699999999 999999998774
No 269
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=39.16 E-value=36 Score=28.40 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=34.6
Q ss_pred CchHHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 213 TPAKYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 213 ~~t~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+.+....+..+ ...+.++.+||+. -+++.+||..+|..+...|.
T Consensus 51 t~~~~~iL~~l~~~~~~t~~ela~~----l~is~~tvs~~l~~Le~~Gl 95 (162)
T 3cjn_A 51 STAKMRALAILSAKDGLPIGTLGIF----AVVEQSTLSRALDGLQADGL 95 (162)
T ss_dssp CHHHHHHHHHHHHSCSEEHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHH----HCCChhHHHHHHHHHHHCCC
Confidence 34444444433 4467899999998 99999999999999999996
No 270
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=39.09 E-value=46 Score=27.36 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=35.3
Q ss_pred CCchHHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++.+....+..+ ...+.++.+||+. -+++.+||..+|..+...|.
T Consensus 35 l~~~~~~iL~~l~~~~~~t~~ela~~----l~~s~~tvs~~l~~Le~~gl 80 (155)
T 1s3j_A 35 VTPAQLFVLASLKKHGSLKVSEIAER----MEVKPSAVTLMADRLEQKNL 80 (155)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHH----HTSCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHH----HCCCHHHHHHHHHHHHHCCC
Confidence 344444444443 3368899999998 99999999999999999996
No 271
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=38.90 E-value=34 Score=27.99 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcCCCC
Q 044490 21 HSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSARP 65 (430)
Q Consensus 21 ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g~~k 65 (430)
..-=.+....+.|...||+.+.+.-.|-+..||+.|-+.|+....
T Consensus 37 vpNL~Vik~mqSLkSrGyVkeqFaWrh~Yw~LTnEGieyLR~yLh 81 (105)
T 3u5c_K 37 TKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLN 81 (105)
T ss_dssp SCHHHHHHHHHHHHHTSSEEEECTTTCCEEEECHHHHHHHHHHTC
T ss_pred ccchhHHHHHhcccccceeccEecceEEEEEEchhhHHHHHHHhC
Confidence 666778888999999999999866677789999999999998643
No 272
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=38.76 E-value=19 Score=31.27 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=26.3
Q ss_pred HHHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 217 YEAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 217 ~~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
..+.++|.+.| .|+.+||+. -|++.+|+|.|.
T Consensus 35 ~aa~~lf~~~G~~~~tv~~IA~~----agvs~~t~Y~~F 69 (215)
T 2qko_A 35 NAAIEVLAREGARGLTFRAVDVE----ANVPKGTASNYF 69 (215)
T ss_dssp HHHHHHHHHTCTTTCCHHHHHHH----SSSTTTCHHHHC
T ss_pred HHHHHHHHHhChhhccHHHHHHH----cCCCcchHHHhC
Confidence 34566787665 699999999 999999999884
No 273
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=38.75 E-value=49 Score=24.86 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCCCHHHHhccCCCCHHHHHHHHHHHH
Q 044490 139 QTIKKIALARPSTKARLANIDGVNQHLVITHGDHLL 174 (430)
Q Consensus 139 ~tL~emA~~~P~T~~eL~~I~Gvg~~k~~kyG~~fL 174 (430)
.|+.++|.. +..+|..|+||++.++.+.-..-.
T Consensus 28 ~tve~vA~~---~~~eL~~I~G~dE~~a~~l~~~A~ 60 (70)
T 1u9l_A 28 STLEELAYV---PMKELLEIEGLDEPTVEALRERAK 60 (70)
T ss_dssp CCHHHHHHS---CHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred CcHHHHHcC---CHHHHhhccCCCHHHHHHHHHHHH
Confidence 466777765 899999999999999988644433
No 274
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=38.72 E-value=13 Score=32.12 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=25.2
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| -|+.+||+. -|++.+|||.|.
T Consensus 17 aA~~lf~~~G~~~~s~~~IA~~----aGvsk~tlY~~F 50 (203)
T 3cdl_A 17 AAIAEFGDRGFEITSMDRIAAR----AEVSKRTVYNHF 50 (203)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHH----TTSCHHHHHTTS
T ss_pred HHHHHHHHcCchhcCHHHHHHH----hCCCHHHHHHHC
Confidence 4566777665 589999999 999999999773
No 275
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=38.66 E-value=27 Score=29.06 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=36.1
Q ss_pred CCchHHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++.+....+..+ ...+.++.+||+. -+++.+||..+|..+...|.
T Consensus 42 lt~~~~~iL~~l~~~~~~t~~ela~~----l~is~~tvs~~l~~Le~~Gl 87 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPKKMKEIAEF----LSTTKSNVTNVVDSLEKRGL 87 (154)
T ss_dssp SBHHHHHHHHHHHHHCCBCHHHHHHH----TTSCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHH----HCCCHHHHHHHHHHHHHCCC
Confidence 455554444444 4468999999998 99999999999999999996
No 276
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=38.66 E-value=16 Score=31.34 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=26.7
Q ss_pred HHHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 217 YEAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 217 ~~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
..+.++|.+.| .|+.+||+. -|++.+||+.|..
T Consensus 23 ~aa~~lf~~~G~~~~t~~~Ia~~----agvs~~t~Y~~F~ 58 (213)
T 2qtq_A 23 QTASNIMREGDVVDISLSELSLR----SGLNSALVKYYFG 58 (213)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHH----HCCCHHHHHHHHS
T ss_pred HHHHHHHHHcCcccccHHHHHHH----hCCChhhHhHhcC
Confidence 34566777666 699999999 9999999998853
No 277
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=38.49 E-value=15 Score=31.73 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=25.6
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+..+|.+.| .|+.+||+. -|++.+|+|.|.
T Consensus 19 aA~~lf~~~G~~~~ti~~Ia~~----agvs~~t~Y~~F 52 (216)
T 3f0c_A 19 AAQKRFAHYGLCKTTMNEIASD----VGMGKASLYYYF 52 (216)
T ss_dssp HHHHHHHHHCSSSCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHcCCCcCCHHHHHHH----hCCCHHHHHHHc
Confidence 4556776666 699999998 999999999884
No 278
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=38.41 E-value=30 Score=30.14 Aligned_cols=46 Identities=13% Similarity=0.223 Sum_probs=38.8
Q ss_pred CCCchHHHHHHHHHh-cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 211 KLTPAKYEAWKMWHE-DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 211 ~l~~t~~~T~~l~~~-~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.+++....-+.++++ ...|..+||+. -+++.+||..+|..+...|.
T Consensus 24 ~ld~~d~~IL~~L~~~~~~s~~eLA~~----lglS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 24 PLDEIDKKIIKILQNDGKAPLREISKI----TGLAESTIHERIRKLRESGV 70 (171)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHH----HTSCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 356666677777764 36899999999 99999999999999999996
No 279
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=37.93 E-value=14 Score=31.74 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|+|.|.
T Consensus 16 aA~~lf~~~G~~~~t~~~IA~~----agvs~~tlY~~F 49 (199)
T 2o7t_A 16 TTCNLYRTHHHDSLTMENIAEQ----AGVGVATLYRNF 49 (199)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHCCCccCCHHHHHHH----hCCCHHHHHHHc
Confidence 4556776665 699999999 999999999884
No 280
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=37.90 E-value=15 Score=31.27 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=25.9
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
.+..+|.++| .|+.+||+. -|++.+|+|.|..
T Consensus 12 aa~~l~~~~G~~~~t~~~Ia~~----agvs~~t~Y~~F~ 46 (185)
T 2yve_A 12 TAIDYIGEYSLETLSYDSLAEA----TGLSKSGLIYHFP 46 (185)
T ss_dssp HHHHHHHHSCSTTCCHHHHHHH----HCCCHHHHHHHCS
T ss_pred HHHHHHHHcChhhccHHHHHHH----hCCChHHHHHhCc
Confidence 4556777666 589999998 9999999998853
No 281
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=37.89 E-value=14 Score=32.89 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=25.6
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
...++|.++| .|+.+||+. -|++.+|+|.|.
T Consensus 21 AA~~l~~~~G~~~~tv~~IA~~----agvs~~t~Y~~F 54 (231)
T 2qib_A 21 VALDLFSRRSPDEVSIDEIASA----AGISRPLVYHYF 54 (231)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHH----HTSCHHHHHHHC
T ss_pred HHHHHHHHcCchhcCHHHHHHH----hCCCHHHHHHHC
Confidence 4566777676 599999998 999999999874
No 282
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=37.85 E-value=14 Score=31.30 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+|+|.|.
T Consensus 16 aa~~l~~~~G~~~~t~~~Ia~~----agvs~~t~Y~~F 49 (206)
T 3dew_A 16 VATELFAQKGFYGVSIRELAQA----AGASISMISYHF 49 (206)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HTCCHHHHHHHS
T ss_pred HHHHHHhcCCcccCcHHHHHHH----hCCCHHHHHHHc
Confidence 4556676655 799999999 999999999884
No 283
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=37.84 E-value=21 Score=34.75 Aligned_cols=46 Identities=20% Similarity=0.173 Sum_probs=37.8
Q ss_pred chHHHHHHHHHh-cC--CCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcc
Q 044490 214 PAKYEAWKMWHE-DG--LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDIN 263 (430)
Q Consensus 214 ~t~~~T~~l~~~-~G--~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~ 263 (430)
++..+-+.++.+ .| .|-++||+. -+++..+|..|+..+-..|+.+.
T Consensus 3 ~~~~~iL~~L~~~~g~~~Sg~eLa~~----lgvSr~aV~k~i~~L~~~G~~i~ 51 (323)
T 3rkx_A 3 KYSQDVLQLLYKNKPNYISGQSIAES----LNISRTAVKKVIDQLKLEGCKID 51 (323)
T ss_dssp CHHHHHHHHHHHHTTSCBCHHHHHHH----HTSCHHHHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHhCCCCccCHHHHHHH----HCCCHHHHHHHHHHHHhcCCeEE
Confidence 455667777742 34 899999999 99999999999999999998565
No 284
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=37.77 E-value=15 Score=32.61 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCC---CHHHHhcCCCCCCCCChhhHHHHH
Q 044490 217 YEAWKMWHEDGL---SIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 217 ~~T~~l~~~~G~---si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
..+.++|.+.|+ |+.+||+. -|++.+|||.|.
T Consensus 51 ~aA~~lf~e~G~~~~t~~~IA~~----aGvs~~tlY~~F 85 (236)
T 3q0w_A 51 ATAENLLEDRPLADISVDDLAKG----AGISRPTFYFYF 85 (236)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHHcCcccCCHHHHHHH----hCCcHHHHHHHC
Confidence 356667877775 99999999 999999999883
No 285
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=37.50 E-value=14 Score=33.04 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=25.5
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
...++|.++| -|+.+||+. -|++.+|||.|.
T Consensus 15 AA~~lF~e~G~~~ts~~~IA~~----AGvs~~tlY~hF 48 (235)
T 2fbq_A 15 AAEQLFAEKGFAETSLRLITSK----AGVNLAAVNYHF 48 (235)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHH----HTSCHHHHHHHT
T ss_pred HHHHHHHHcCccccCHHHHHHH----hCCCHHHHHHHc
Confidence 3556777666 599999998 999999999885
No 286
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=37.46 E-value=9.1 Score=32.75 Aligned_cols=32 Identities=6% Similarity=0.117 Sum_probs=25.3
Q ss_pred HHHHHHHhc---CCCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 218 EAWKMWHED---GLSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 218 ~T~~l~~~~---G~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
.+.++|.+. +.|+.+||+. -|++.+|||.|..
T Consensus 16 AA~~l~~~~G~~~~t~~~IA~~----agvs~~t~Y~~F~ 50 (195)
T 3frq_A 16 AATVVLKRCGPIEFTLSGVAKE----VGLSRAALIQRFT 50 (195)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHH----HTCCHHHHHHHHC
T ss_pred HHHHHHHhhCcccCCHHHHHHH----hCCCHHHHHHHcC
Confidence 345566555 4599999998 9999999998864
No 287
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=37.39 E-value=15 Score=32.50 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=35.6
Q ss_pred cCCCchHHHHHHHHHhcC----CCHHHHhcCCCCCCC-----CChhhHHHHHHHHHHc
Q 044490 210 TKLTPAKYEAWKMWHEDG----LSIQKIANYPGRSAP-----IKEQTVVDYLLEAVSE 258 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~~G----~si~eIA~~~~r~R~-----L~~sTI~~HL~~~i~~ 258 (430)
..+|+...+-+.++. +| +|..+||+. -. ++..||..|+..+.+.
T Consensus 158 ~~Lt~rE~~vL~~l~-~g~~~~~s~~~Ia~~----l~~~~~~~s~~tv~~hi~~l~~K 210 (233)
T 1ys7_A 158 VDLTKREFDLLAVLA-EHKTAVLSRAQLLEL----VWGYDFAADTNVVDVFIGYLRRK 210 (233)
T ss_dssp CCCCHHHHHHHHHHH-HTTTCCBCHHHHHHH----HHCCCCC-CCCHHHHHHHHHHHH
T ss_pred eccCHHHHHHHHHHH-hCCCCeEcHHHHHHH----hcCcccCCCccCHHHHHHHHHHH
Confidence 357888888888888 89 999999986 44 7789999999888654
No 288
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=37.35 E-value=6.9 Score=32.78 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=24.1
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+|+|.|.
T Consensus 20 aa~~l~~~~G~~~~tv~~Ia~~----agvs~~t~Y~~F 53 (177)
T 3kkc_A 20 AFISLLQENDYSKITVQDVIGL----ANVGRSTFYSHY 53 (177)
T ss_dssp HHHHHTTTSCTTTCCHHHHHHH----HCCCHHHHTTTC
T ss_pred HHHHHHHhCChhHhhHHHHHHH----hCCcHhhHHHHc
Confidence 3445665555 499999999 999999998763
No 289
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=37.29 E-value=23 Score=28.79 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=35.6
Q ss_pred CCchHHHHHHHH-H-hcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMW-H-EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~-~-~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++++....+..+ . ..+.++.+||+. -+++.+||..++..+...|.
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~----l~~s~~~vs~~l~~L~~~gl 81 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQS----VGVEGPTLARLLDGLESQGL 81 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHH----hCCChhhHHHHHHHHHHCCC
Confidence 344444445444 3 368899999998 99999999999999999996
No 290
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=37.16 E-value=32 Score=31.20 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=36.8
Q ss_pred CCCchHHHHHHHHHhcC----CCHHHHhc-----CCCCCCCCChhhHHHHHHHHHHc
Q 044490 211 KLTPAKYEAWKMWHEDG----LSIQKIAN-----YPGRSAPIKEQTVVDYLLEAVSE 258 (430)
Q Consensus 211 ~l~~t~~~T~~l~~~~G----~si~eIA~-----~~~r~R~L~~sTI~~HL~~~i~~ 258 (430)
.+|+...+.+.++. +| +|-++||+ . -+++..||..|+..+.++
T Consensus 182 ~LT~rE~evL~ll~-~g~~~~~s~~eIa~~l~~~~----l~~s~~TV~~hi~~lr~K 233 (249)
T 3q9s_A 182 RLSPKEFDILALLI-RQPGRVYSRQEIGQEIWQGR----LPEGSNVVDVHMANLRAK 233 (249)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCCCHHHHHHHHHTTC----SCTTCSHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHhcCCC----CCCCccCHHHHHHHHHHH
Confidence 58888899999998 88 99999998 5 667889999999988664
No 291
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=37.05 E-value=31 Score=32.17 Aligned_cols=43 Identities=14% Similarity=0.076 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee-c-Cc-cceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI-K-DV-YRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~-~-~~-y~~l~LT~kg~~~L~g 62 (430)
.++...+-++++.|...|||.... . +. .-.|.||++|++++..
T Consensus 185 ~i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~ 230 (250)
T 1p4x_A 185 HHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQ 230 (250)
T ss_dssp SSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHH
Confidence 478899999999999999999863 1 21 2358999999999874
No 292
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=36.86 E-value=33 Score=28.12 Aligned_cols=95 Identities=12% Similarity=0.116 Sum_probs=56.1
Q ss_pred CCCchHHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhh-----hhhccCCCHHHHHHHHHH
Q 044490 211 KLTPAKYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTR-----LCDEVGLTDEIFSAIQEA 284 (430)
Q Consensus 211 ~l~~t~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~-----~i~~~~l~~e~~~~I~~a 284 (430)
.++.+....+..+ ...+.++.+||+. -+++.+||..++..+...|. +.-.. -...+-+|++=...+..+
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~----l~~~~~tvs~~l~~Le~~Gl-v~r~~~~~D~R~~~~~lT~~G~~~~~~~ 111 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDI----LGLDKAAVSRTVKKLEEKKY-IEVNGHSEDKRTYAINLTEMGQELYEVA 111 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHH----HTCCHHHHHHHHHHHHHTTS-EEC---------CCBEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHH----HCCCHHHHHHHHHHHHHCCC-EEeecCCCCcceeEeEECHhHHHHHHHH
Confidence 3555555555544 4357999999998 99999999999999999996 44221 000123466544444333
Q ss_pred HHHhCCCCChHHHHHhCCCCCCHHHHHHHHHH
Q 044490 285 ISKVGCKDKLKPIKNELPDDITYAHIKACLVM 316 (430)
Q Consensus 285 ~~~~g~~~~LkpIke~l~~~isY~~Irl~la~ 316 (430)
.... ..+.+.+-..++-.++..+...
T Consensus 112 ~~~~------~~~~~~~~~~l~~~e~~~l~~~ 137 (148)
T 3nrv_A 112 SDFA------IEREKQLLEEFEEAEKDQLFIL 137 (148)
T ss_dssp HHHT------HHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHH------HHHHHHHHHcCCHHHHHHHHHH
Confidence 3322 2233333344666666554443
No 293
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=36.69 E-value=11 Score=31.77 Aligned_cols=32 Identities=9% Similarity=0.201 Sum_probs=26.3
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
.+.++|.+.| .|+.+||+. -|++.+|++.|..
T Consensus 14 aa~~l~~~~G~~~~t~~~Ia~~----agvs~~t~Y~~F~ 48 (191)
T 1sgm_A 14 TASRLSQLQGYHATGLNQIVKE----SGAPKGSLYHFFP 48 (191)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHH----HCCCSCHHHHSTT
T ss_pred HHHHHHHHcCccccCHHHHHHH----HCCCchhHHHHcc
Confidence 4556776665 699999999 9999999998875
No 294
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=36.63 E-value=15 Score=32.48 Aligned_cols=44 Identities=9% Similarity=0.043 Sum_probs=36.6
Q ss_pred cCCCchHHHHHHHHHhcC----CCHHHHhcCCCCCC-----CCChhhHHHHHHHHHHc
Q 044490 210 TKLTPAKYEAWKMWHEDG----LSIQKIANYPGRSA-----PIKEQTVVDYLLEAVSE 258 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~~G----~si~eIA~~~~r~R-----~L~~sTI~~HL~~~i~~ 258 (430)
..+|+...+-+.++. +| +|-.+||+. - .++..||..|+..+.+.
T Consensus 155 ~~Lt~rE~~vL~~l~-~~~~~~~s~~~Ia~~----lw~~~~~~s~~tv~~hi~~i~~K 207 (230)
T 2oqr_A 155 ITLPLKEFDLLEYLM-RNSGRVLTRGQLIDR----VWGADYVGDTKTLDVHVKRLRSK 207 (230)
T ss_dssp CCCCHHHHHHHHHHH-HTTTSCEEHHHHHHH----HTSSCCTTHHHHHHHHHHHHHHH
T ss_pred eecCHHHHHHHHHHH-hCCCceEcHHHHHHH----hcCCCCCCCCcCHHHHHHHHHHH
Confidence 357888888888887 77 999999986 5 68899999999988765
No 295
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=36.55 E-value=11 Score=31.73 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=24.7
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+||+.|.
T Consensus 15 aA~~l~~~~G~~~~s~~~IA~~----agvs~~tly~~F 48 (180)
T 2fd5_A 15 AATQALLERGAVEPSVGEVMGA----AGLTVGGFYAHF 48 (180)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHH----TTCCGGGGGGTC
T ss_pred HHHHHHHHhCcccCCHHHHHHH----hCCCccHHHHHC
Confidence 3555666565 599999999 999999998774
No 296
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=36.41 E-value=20 Score=32.17 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHH
Q 044490 216 KYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLE 254 (430)
Q Consensus 216 ~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~ 254 (430)
....+.++. +|+|+.+||.. -+++.+||+.+|..
T Consensus 165 v~~i~~~~~-~G~s~~~Ia~~----l~is~~tv~r~l~~ 198 (209)
T 2r0q_C 165 YHRVVEMLE-EGQAISKIAKE----VNITRQTVYRIKHD 198 (209)
T ss_dssp HHHHHHHHH-TTCCHHHHHHH----HTCCHHHHHHHHTT
T ss_pred HHHHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHhc
Confidence 357788888 99999999998 89999999987754
No 297
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=36.40 E-value=15 Score=31.13 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=25.1
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+..+|.+.| .|+.+||+. -|++.+||+.|.
T Consensus 16 aA~~l~~~~G~~~~t~~~IA~~----Agvs~~tly~~F 49 (194)
T 3dpj_A 16 AADELFYRQGFAQTSFVDISAA----VGISRGNFYYHF 49 (194)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHcCcccCCHHHHHHH----HCCChHHHHHHc
Confidence 4555666555 699999998 999999999885
No 298
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=36.36 E-value=14 Score=32.15 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=26.1
Q ss_pred HHHHHHHhcC--CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 218 EAWKMWHEDG--LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 218 ~T~~l~~~~G--~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
.+.++|.+.| .|+.+||+. -|++.+|||.|..
T Consensus 20 aA~~lf~~~G~~~s~~~IA~~----agvs~~tiY~~F~ 53 (224)
T 1t33_A 20 AALAQFGEYGLHATTRDIAAL----AGQNIAAITYYFG 53 (224)
T ss_dssp HHHHHHHHHGGGSCHHHHHHH----HTSCHHHHHHHHS
T ss_pred HHHHHHHHhCccccHHHHHHH----hCCCHHHHHHhcC
Confidence 4556676666 799999998 9999999998864
No 299
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=36.18 E-value=15 Score=31.80 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=25.2
Q ss_pred HHHHHHHhc---CCCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHED---GLSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~---G~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++ +.|+.+||+. -|++.+|||.|.
T Consensus 19 aA~~lf~~~G~~~~s~~~IA~~----aGvskgtlY~~F 52 (210)
T 2xdn_A 19 AAERAFYKRGVARTTLADIAEL----AGVTRGAIYWHF 52 (210)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHH----HTCCTTHHHHHC
T ss_pred HHHHHHHHcCcccCcHHHHHHH----HCCChHHHHHHh
Confidence 455677665 4789999999 999999999884
No 300
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=36.04 E-value=15 Score=31.05 Aligned_cols=31 Identities=35% Similarity=0.380 Sum_probs=24.8
Q ss_pred HHHHHHHhc---CCCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHED---GLSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~---G~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++ +.|+.+||+. -|++.+|||.|.
T Consensus 15 aa~~l~~~~G~~~~t~~~IA~~----agvs~~tlY~~F 48 (186)
T 2jj7_A 15 AAKKKFGERGYEGTSIQEIAKE----AKVNVAMASYYF 48 (186)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHH----HTSCHHHHHHHH
T ss_pred HHHHHHHHcCCccCCHHHHHHH----hCCChhhhhhhc
Confidence 345566555 4899999999 999999999884
No 301
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=35.96 E-value=13 Score=31.49 Aligned_cols=31 Identities=10% Similarity=0.267 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+..+|.+.| .|+.+||+. -|++.+|+|.|.
T Consensus 22 aA~~l~~~~G~~~~t~~~IA~~----agvs~~t~Y~~F 55 (191)
T 4aci_A 22 GARRCFAEHGYEGATVRRLEEA----TGKSRGAIFHHF 55 (191)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHH----HTCCHHHHHHHH
T ss_pred HHHHHHHHhCcccCCHHHHHHH----HCCCchHHHHHC
Confidence 4555666555 899999998 999999999885
No 302
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=35.92 E-value=13 Score=32.73 Aligned_cols=43 Identities=5% Similarity=0.039 Sum_probs=36.4
Q ss_pred CCCchHHHHHHHHHhcC----CCHHHHhcCCCCCCC-----CChhhHHHHHHHHHHc
Q 044490 211 KLTPAKYEAWKMWHEDG----LSIQKIANYPGRSAP-----IKEQTVVDYLLEAVSE 258 (430)
Q Consensus 211 ~l~~t~~~T~~l~~~~G----~si~eIA~~~~r~R~-----L~~sTI~~HL~~~i~~ 258 (430)
.+|+...+-+.++. +| +|..+||+. -. ++..||..|+..+.+.
T Consensus 143 ~Lt~rE~~vL~~l~-~~~~~~~s~~~Ia~~----l~~~~~~~s~~tv~~~i~~lr~K 194 (223)
T 2hqr_A 143 EVKGKPFEVLTHLA-RHRDQIVSKEQLLDA----IWEEPEMVTPNVIEVAINQIRQK 194 (223)
T ss_dssp CCCSTTTHHHHHHH-HTCSEEEEHHHHHHH----HCCSSCSCGGGTHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHH-hCCCCcCCHHHHHHH----hcCCccCCCCcCHHHHHHHHHHH
Confidence 47888888888888 89 999999997 65 8899999999888654
No 303
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=35.76 E-value=37 Score=28.93 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee-c--Cc--cceEEeCcchHhhhcCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI-K--DV--YRTVSVSQQGKQYLGSA 63 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~-~--~~--y~~l~LT~kg~~~L~g~ 63 (430)
.++...+-.+++.|..+|||.... . ++ -.++.||++|++.|...
T Consensus 73 ~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~ 121 (145)
T 1xma_A 73 VIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQK 121 (145)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHH
T ss_pred CcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHHHH
Confidence 489999999999999999998762 1 11 13589999999998753
No 304
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=35.75 E-value=18 Score=31.37 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=26.9
Q ss_pred HHHHHHHHhcC--CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 217 YEAWKMWHEDG--LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 217 ~~T~~l~~~~G--~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
..+..+|.++| .|+.+||+. -|++.+|||.|..
T Consensus 27 ~aA~~lf~~~G~~~s~~~IA~~----aGvs~~tlY~~F~ 61 (215)
T 2hku_A 27 TAATELFLEHGEGVPITQICAA----AGAHPNQVTYYYG 61 (215)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHH----HTCCHHHHHHHHS
T ss_pred HHHHHHHHHhCCCcCHHHHHHH----hCCCHHHHHHHcC
Confidence 34566776565 999999999 9999999998853
No 305
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=35.75 E-value=10 Score=32.23 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=25.0
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||.. -|++.+|||.|.
T Consensus 15 aA~~lf~~~G~~~~s~~~IA~~----aGvs~~tlY~~F 48 (178)
T 4hku_A 15 MAEKIIYEKGMEKTTLYDIASN----LNVTHAALYKHY 48 (178)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----TTSCGGGGGGTC
T ss_pred HHHHHHHHhCcccccHHHHHHH----hCcCHhHHHHHC
Confidence 3456776666 599999998 999999998774
No 306
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=35.63 E-value=32 Score=26.52 Aligned_cols=29 Identities=17% Similarity=-0.001 Sum_probs=28.0
Q ss_pred CCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 228 LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 228 ~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.++.+||+. -+++.+||..+|..+...|+
T Consensus 31 ~t~~eLa~~----l~i~~~tvs~~l~~Le~~Gl 59 (95)
T 2qvo_A 31 VYIQYIASK----VNSPHSYVWLIIKKFEEAKM 59 (95)
T ss_dssp EEHHHHHHH----SSSCHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHH----HCcCHHHHHHHHHHHHHCcC
Confidence 899999998 99999999999999999996
No 307
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=35.57 E-value=18 Score=30.65 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=25.6
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+..+|.+.| .|+.+||+. -|++.+|||.|.
T Consensus 25 aa~~l~~~~G~~~~s~~~Ia~~----agvs~~t~Y~~F 58 (206)
T 3kz9_A 25 IALEVFARRGIGRGGHADIAEI----AQVSVATVFNYF 58 (206)
T ss_dssp HHHHHHHHSCCSSCCHHHHHHH----HTSCHHHHHHHC
T ss_pred HHHHHHHhcCcccccHHHHHHH----hCCCHHHHHHHc
Confidence 4566777676 679999998 999999999884
No 308
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=35.57 E-value=45 Score=27.23 Aligned_cols=44 Identities=18% Similarity=0.107 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeec--Cc---cceEEeCcchHhhhcCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIK--DV---YRTVSVSQQGKQYLGSA 63 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~--~~---y~~l~LT~kg~~~L~g~ 63 (430)
.++...+-..++.|..+|||..... .. -.++.||++|++.|...
T Consensus 41 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~ 89 (117)
T 4esf_A 41 EVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELF 89 (117)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHH
Confidence 5799999999999999999987621 11 12589999999999864
No 309
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=35.43 E-value=46 Score=27.58 Aligned_cols=45 Identities=18% Similarity=0.122 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeee--cCc--cceEEeCcchHhhhcCC
Q 044490 19 KDHSSNWWKTLAYQLISYGYLTETI--KDV--YRTVSVSQQGKQYLGSA 63 (430)
Q Consensus 19 k~ls~~~wk~li~qLi~~GyL~e~~--~~~--y~~l~LT~kg~~~L~g~ 63 (430)
-.++...+=.+++.|...|||.... .++ -.++.||++|++.|...
T Consensus 48 ~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~ 96 (123)
T 3ri2_A 48 IPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREV 96 (123)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHH
Confidence 3678999999999999999998762 111 12689999999999864
No 310
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=35.26 E-value=13 Score=32.55 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=25.7
Q ss_pred HHHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 217 YEAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 217 ~~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
..+.++|.++| .|+.+||+. -|++.+|||.|.
T Consensus 18 ~aA~~lf~~~G~~~~s~~~IA~~----aGvskgtlY~~F 52 (219)
T 2w53_A 18 DAAEACFHEHGVARTTLEMIGAR----AGYTRGAVYWHF 52 (219)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHH----HTSCHHHHHTTC
T ss_pred HHHHHHHHHhCcccCCHHHHHHH----hCCCchHHhhcC
Confidence 34566777665 699999998 999999999773
No 311
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=35.07 E-value=1.8e+02 Score=23.50 Aligned_cols=95 Identities=9% Similarity=0.154 Sum_probs=51.4
Q ss_pred CCchHHHHHH-HHHh--cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhh-----hhhccCCCHHHHHHHHH
Q 044490 212 LTPAKYEAWK-MWHE--DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTR-----LCDEVGLTDEIFSAIQE 283 (430)
Q Consensus 212 l~~t~~~T~~-l~~~--~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~-----~i~~~~l~~e~~~~I~~ 283 (430)
++.+....+. ++.. .|.++.+||+. -+++.+||..++..+...|. +.-.. =.-.+-||++=.+.+..
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~----l~~~~~~vs~~l~~L~~~Gl-v~r~~~~~DrR~~~~~LT~~G~~~~~~ 113 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQF----FGRRGASITSMLQGLEKKGY-IERRIPENNARQKNIYVLPKGAALVEE 113 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC----------CHHHHHHHHHHTTS-BCCC--------CCCCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHH----HCCChhHHHHHHHHHHHCCC-EEeeCCCCCchhheeeECHHHHHHHHH
Confidence 3344434443 3343 58999999999 99999999999999999996 53221 00113356654444433
Q ss_pred HHHHhCCCCChHHHHHhCCCCCCHHHHHHHHHHH
Q 044490 284 AISKVGCKDKLKPIKNELPDDITYAHIKACLVME 317 (430)
Q Consensus 284 a~~~~g~~~~LkpIke~l~~~isY~~Irl~la~~ 317 (430)
+... ...+.+.+-..++-.++..+...+
T Consensus 114 ~~~~------~~~~~~~~~~~l~~~e~~~l~~~L 141 (148)
T 3jw4_A 114 FNNI------FLEVEESITKGLTKDEQKQLMSIL 141 (148)
T ss_dssp HHHH------HHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred HHHH------HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3332 223445555567777776655443
No 312
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=34.97 E-value=58 Score=27.58 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=35.7
Q ss_pred CCchHHHHHHHHH--hcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMWH--EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~~--~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++.+....+..+. ..+.++.+||+. -+++.+||...|..+...|.
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~----l~i~~~tvs~~l~~Le~~Gl 97 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKA----IGIEQPSLVRTLDQLEDKGL 97 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHH----HTSCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHH----HCCCHhhHHHHHHHHHHCCC
Confidence 4444444554443 257999999998 99999999999999999996
No 313
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=34.96 E-value=26 Score=27.09 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=34.4
Q ss_pred hHHHHHHHHH-hcCCCHHHHhcCCCCCCCCChh-hHHHHHHHHHHcCC
Q 044490 215 AKYEAWKMWH-EDGLSIQKIANYPGRSAPIKEQ-TVVDYLLEAVSEGF 260 (430)
Q Consensus 215 t~~~T~~l~~-~~G~si~eIA~~~~r~R~L~~s-TI~~HL~~~i~~G~ 260 (430)
+....+.++. ..+.|..+||+. -+++.. +|-.||..+...|.
T Consensus 12 ~~~~IL~~Lk~~g~~ta~eiA~~----Lgit~~~aVr~hL~~Le~eGl 55 (79)
T 1xmk_A 12 IKEKICDYLFNVSDSSALNLAKN----IGLTKARDINAVLIDMERQGD 55 (79)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHH----HCGGGHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCcCHHHHHHH----cCCCcHHHHHHHHHHHHHCCC
Confidence 4445555554 358899999999 999999 99999999999995
No 314
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=34.56 E-value=49 Score=26.90 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee--cCcc---ceEEeCcchHhhhcCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI--KDVY---RTVSVSQQGKQYLGSA 63 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~--~~~y---~~l~LT~kg~~~L~g~ 63 (430)
.++...+-..++.|...|||.... .+.. .++.||++|++.|...
T Consensus 39 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~ 87 (115)
T 4esb_A 39 FVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEEF 87 (115)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHHH
T ss_pred CCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHH
Confidence 579999999999999999998752 1111 2589999999999864
No 315
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=34.53 E-value=32 Score=30.18 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcCCC
Q 044490 19 KDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSAR 64 (430)
Q Consensus 19 k~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g~~ 64 (430)
+...-=.+-.+++.|...||+.+.+.-.|-+..||+.|-+.|+...
T Consensus 35 ~~vpNL~ViKamqSLkSRGyVkEqFaWrhyYw~LTnEGIeYLR~yL 80 (162)
T 2xzm_7 35 TGVPNLHCYILVRSLKDRGFLEEIFNWGFTYYYLNKEGCEYLKTKL 80 (162)
T ss_dssp TCCBHHHHHHHHHHHHHHTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred cCcCcHHHHHHHhcccccccccceeeeEEEEEEEchHHHHHHHHHh
Confidence 3466777888999999999999986667778999999999999863
No 316
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=34.40 E-value=17 Score=31.22 Aligned_cols=31 Identities=23% Similarity=0.494 Sum_probs=25.1
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|||.|.
T Consensus 18 aA~~lf~~~G~~~~s~~~IA~~----aGvs~gtlY~yF 51 (194)
T 2nx4_A 18 AAWRLIAARGIEAANMRDIATE----AGYTNGALSHYF 51 (194)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHhcCcccCCHHHHHHH----hCCCcchHHHhC
Confidence 3456676655 689999999 999999999885
No 317
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=34.19 E-value=20 Score=30.04 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=25.1
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+|++.|.
T Consensus 16 aa~~l~~~~G~~~~ti~~Ia~~----agvs~~t~Y~~F 49 (194)
T 2g7s_A 16 CARTLIIRGGYNSFSYADISQV----VGIRNASIHHHF 49 (194)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HCCCHHHHHHHC
T ss_pred HHHHHHHHcCcccCCHHHHHHH----hCCCchHHHHHc
Confidence 4556676554 799999999 999999999884
No 318
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=34.18 E-value=17 Score=31.08 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||.. -|++.+|+|.|.
T Consensus 22 aa~~l~~~~G~~~~ti~~Ia~~----agvs~~t~Y~~F 55 (220)
T 3lhq_A 22 VALRLFSQQGVSATSLAEIANA----AGVTRGAIYWHF 55 (220)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHcCcccCCHHHHHHH----hCCCceeehhhc
Confidence 4566776666 689999999 999999999884
No 319
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=34.15 E-value=48 Score=27.06 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeec--Cc---cceEEeCcchHhhhcCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIK--DV---YRTVSVSQQGKQYLGSA 63 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~--~~---y~~l~LT~kg~~~L~g~ 63 (430)
.++...+-.+++.|...|+|..... +. -.++.||++|++.|...
T Consensus 43 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~~ 91 (116)
T 3hhh_A 43 EIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADF 91 (116)
T ss_dssp SCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHH
Confidence 5799999999999999999987621 11 12689999999999864
No 320
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=34.13 E-value=15 Score=32.31 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=26.1
Q ss_pred HHHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 217 YEAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 217 ~~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
..+.++|.+.| .|+.+||+. -|++.+|||.|.
T Consensus 35 ~AA~~lf~~~G~~~~t~~~IA~~----aGvs~~tlY~~F 69 (217)
T 3hta_A 35 DAAIRVVGQKGIAGLSHRTVAAE----ADVPLGSTTYHF 69 (217)
T ss_dssp HHHHHHHHHHTGGGCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHHcCcccCCHHHHHHH----cCCCcchhhhcC
Confidence 34566777666 599999998 999999999884
No 321
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=34.11 E-value=97 Score=25.25 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=54.3
Q ss_pred CchHHHHHHHH-Hh-cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhhh-----hhccCCCHHHHHHHHHHH
Q 044490 213 TPAKYEAWKMW-HE-DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRL-----CDEVGLTDEIFSAIQEAI 285 (430)
Q Consensus 213 ~~t~~~T~~l~-~~-~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~~-----i~~~~l~~e~~~~I~~a~ 285 (430)
+.+....+..+ .. .+.|+.+||+. -+++.+||..++..+...|. +.-..- .-.+.||++=.+.+....
T Consensus 38 t~~q~~vL~~l~~~~~~~t~~eLa~~----l~i~~~tvs~~l~~Le~~Gl-v~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 112 (150)
T 3fm5_A 38 RVRSYSVLVLACEQAEGVNQRGVAAT----MGLDPSQIVGLVDELEERGL-VVRTLDPSDRRNKLIAATEEGRRLRDDAK 112 (150)
T ss_dssp CHHHHHHHHHHHHSTTCCCSHHHHHH----HTCCHHHHHHHHHHHHTTTS-EEC-----------CEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCcCHHHHHHH----HCCCHhHHHHHHHHHHHCCC-EEeeCCccccchheeeECHHHHHHHHHHH
Confidence 34444444433 32 36799999999 99999999999999999996 432110 000234654444443333
Q ss_pred HHhCCCCChHHHHHhCCCCCCHHHHHHHHHHHH
Q 044490 286 SKVGCKDKLKPIKNELPDDITYAHIKACLVMEN 318 (430)
Q Consensus 286 ~~~g~~~~LkpIke~l~~~isY~~Irl~la~~~ 318 (430)
... ..+.+.+-..++-.++..+...+.
T Consensus 113 ~~~------~~~~~~~~~~l~~~e~~~l~~~L~ 139 (150)
T 3fm5_A 113 ARV------DAAHGRYFEGIPDTVVNQMRDTLQ 139 (150)
T ss_dssp HHH------HHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHH------HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 322 223333334566677666555443
No 322
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=34.10 E-value=15 Score=31.72 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=25.7
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
...++|.++| .|+.+||+. -|++.+|||.|..
T Consensus 20 aA~~l~~e~G~~~~s~~~IA~~----agvs~~t~Y~hF~ 54 (198)
T 3cjd_A 20 LAEAQIEAEGLASLRARELARQ----ADCAVGAIYTHFQ 54 (198)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HTSCHHHHHHHCS
T ss_pred HHHHHHHhCChhhcCHHHHHHH----hCCCccHHHHHhC
Confidence 3455666555 699999998 9999999999854
No 323
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=34.06 E-value=8.5 Score=34.14 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHH
Q 044490 216 KYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAV 256 (430)
Q Consensus 216 ~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i 256 (430)
....+.|+. +|+|+.+||.. -+++.+||+.++...-
T Consensus 148 ~~~i~~l~~-~G~s~~~Ia~~----l~vs~~Tvyr~l~~~~ 183 (193)
T 3uj3_X 148 WEQAGRLLA-QGIPRKQVALI----YDVALSTLYKKHPAKR 183 (193)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHH-cCCCHHHHHHH----HCcCHHHHHHHHHHhh
Confidence 456778887 99999999999 9999999999887653
No 324
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=34.01 E-value=19 Score=30.97 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=26.5
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
.+..+|.+.| .|+.+||+. -|++.+|||.|..
T Consensus 25 aA~~l~~~~G~~~~t~~~IA~~----agvs~~t~Y~~F~ 59 (218)
T 3gzi_A 25 AARNLFIERPYAQVSIREIASL----AGTDPGLIRYYFG 59 (218)
T ss_dssp HHHHHHHTSCCSCCCHHHHHHH----HTSCTHHHHHHHS
T ss_pred HHHHHHHHCCCCcCCHHHHHHH----hCCCHHHHHHHcC
Confidence 4566777666 699999999 9999999998863
No 325
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=33.95 E-value=19 Score=30.13 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=25.5
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+..+|.+.| .|+.+||+. -|++.+|+|.|.
T Consensus 17 aa~~l~~~~G~~~~tv~~Ia~~----agvs~~t~Y~~F 50 (195)
T 3ppb_A 17 TALQLFVSQGFHGTSTATIARE----AGVATGTLFHHF 50 (195)
T ss_dssp HHHHHHHHTCSTTSCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHhcCcccCCHHHHHHH----hCCChhHHHHHc
Confidence 4566777665 699999998 999999999874
No 326
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=33.93 E-value=34 Score=29.81 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=57.8
Q ss_pred CCchHHHHHHHHH---hcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhh-----hhhccCCCHHHHHHHHH
Q 044490 212 LTPAKYEAWKMWH---EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTR-----LCDEVGLTDEIFSAIQE 283 (430)
Q Consensus 212 l~~t~~~T~~l~~---~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~-----~i~~~~l~~e~~~~I~~ 283 (430)
++.+....+..+. ..+.++.+||+. -+++.+||..+|..+...|. +.-.. =.-.+.||++=.+.+..
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~----l~is~~tvs~~l~~Le~~Gl-V~r~~~~~DrR~~~l~LT~~G~~~~~~ 113 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARK----MGTSKQNINRLVANLEKNGY-VDVIPSPHDKRAINVKVTDLGKKVMVT 113 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHH----HTSCHHHHHHHHHHHHHTTS-EEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHH----HCCCHHHHHHHHHHHHHCCC-EEeccCCCCCCeeEEEECHHHHHHHHH
Confidence 5555555555443 358999999998 99999999999999999996 43211 00012357655444443
Q ss_pred HHHHhCCCCChHHHHHhCCCCCCHHHHHHHHHHH
Q 044490 284 AISKVGCKDKLKPIKNELPDDITYAHIKACLVME 317 (430)
Q Consensus 284 a~~~~g~~~~LkpIke~l~~~isY~~Irl~la~~ 317 (430)
+.... ..+.+.+-..++-.++..+...+
T Consensus 114 ~~~~~------~~~~~~~~~~l~~ee~~~l~~~L 141 (189)
T 3nqo_A 114 CSRTG------INFMADVFHEFTKDELETLWSLL 141 (189)
T ss_dssp HHHHH------HHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHH------HHHHHHHHHhCCHHHHHHHHHHH
Confidence 33332 11223333557777777555443
No 327
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=33.87 E-value=60 Score=26.35 Aligned_cols=44 Identities=16% Similarity=-0.071 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee-c--Ccc---ceEEeCcchHhhhcCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI-K--DVY---RTVSVSQQGKQYLGSA 63 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~-~--~~y---~~l~LT~kg~~~L~g~ 63 (430)
.++...+-..++.|..+|||.... . +.. ..+.||++|++.|...
T Consensus 53 ~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~ 102 (115)
T 2dql_A 53 RLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDL 102 (115)
T ss_dssp ECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHH
Confidence 588999999999999999998762 1 111 3589999999998754
No 328
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=33.77 E-value=26 Score=32.17 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=32.9
Q ss_pred HHHHHHHhc--CCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 218 EAWKMWHED--GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 218 ~T~~l~~~~--G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
..++++.+. ++++.|||+. -++..+|+..||..+...|+
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~----~gl~~stv~r~l~~L~~~G~ 50 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQL----VGLPRSTVQRIINALEEEFL 50 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHH----TTSCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 445555533 6899999998 99999999999999999996
No 329
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=33.73 E-value=33 Score=32.38 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=36.5
Q ss_pred CHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhhhhhccCCCHHHHHHHHHHHHHhCCCC
Q 044490 229 SIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCKD 292 (430)
Q Consensus 229 si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~~i~~~~l~~e~~~~I~~a~~~~g~~~ 292 (430)
|+.+||+. -|++.+||..-|- |. . +++++..+.|.++++++|+..
T Consensus 2 ti~diA~~----agVS~~TVSrvLn-----~~-----~-----~vs~~tr~rV~~~a~~lgY~p 46 (340)
T 1qpz_A 2 TIKDVAKR----ANVSTTTVSHVIN-----KT-----R-----FVAEETRNAVWAAIKELHYSP 46 (340)
T ss_dssp CHHHHHHH----HTSCHHHHHHHHH-----TC-----S-----CCCHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHH----HCCCHHHHHHHHc-----Cc-----C-----CCCHHHHHHHHHHHHHhCCCC
Confidence 78999998 9999999977665 32 1 248999999999999998643
No 330
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=33.66 E-value=21 Score=30.91 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=25.7
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| -|+.+||+. -|++.+|||.|.
T Consensus 20 aA~~lf~~~G~~~ts~~~IA~~----aGvsk~tlY~~F 53 (211)
T 3bhq_A 20 AATAAFISKGYDGTSMEEIATK----AGASKQTVYKHF 53 (211)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHH----HTCCHHHHHHHH
T ss_pred HHHHHHHHhCcccCCHHHHHHH----hCCCHHHHHHHc
Confidence 4566777654 689999998 999999999886
No 331
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=33.55 E-value=13 Score=31.80 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|+|.|.
T Consensus 21 aa~~lf~~~G~~~~tv~~Ia~~----agvs~~t~Y~~F 54 (195)
T 2iu5_A 21 AFKDLMQSNAYHQISVSDIMQT----AKIRRQTFYNYF 54 (195)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHH----HTSCGGGGGGTC
T ss_pred HHHHHHHhCCCCeeCHHHHHHH----hCCCHHHHHHHc
Confidence 4566777676 689999999 999999998763
No 332
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=33.46 E-value=13 Score=31.36 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=25.2
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+|||.|.
T Consensus 18 aa~~l~~~~G~~~~ti~~Ia~~----agvs~~t~Y~~F 51 (196)
T 3col_A 18 AVAAIILAEGPAGVSTTKVAKR----VGIAQSNVYLYF 51 (196)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HTSCHHHHHTTC
T ss_pred HHHHHHHhcCcccCCHHHHHHH----hCCcHHHHHHHh
Confidence 4556776655 799999999 999999998773
No 333
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=33.42 E-value=12 Score=32.28 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=24.8
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| -|+.+||+. -|++.+|||.|.
T Consensus 20 aA~~lf~~~Gy~~ts~~~IA~~----agvs~gtlY~yF 53 (205)
T 1rkt_A 20 AAKTVFKRKGFELTTMKDVVEE----SGFSRGGVYLYF 53 (205)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHH----HTSCHHHHHTTC
T ss_pred HHHHHHHHcCcccCCHHHHHHH----HCCCcchhhhhC
Confidence 3556676655 699999998 999999998774
No 334
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=33.42 E-value=37 Score=32.47 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=33.6
Q ss_pred HHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 219 AWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 219 T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
...|+..++++..|||+. -++++.||..-|..+...|.
T Consensus 13 ia~l~~~~~~~~~ela~~----l~vS~~tIrRdL~~l~~~G~ 50 (315)
T 2w48_A 13 IAQLYYEQDMTQAQIARE----LGIYRTTISRLLKRGREQGI 50 (315)
T ss_dssp HHHHHHTSCCCHHHHHHH----TTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCc
Confidence 344555599999999999 99999999999999999996
No 335
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=33.14 E-value=20 Score=31.17 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=25.8
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
...++|.++| .|+.+||+. -|++.+|+|.|.
T Consensus 30 AA~~lf~e~G~~~~s~~~IA~~----AGVsk~tlY~~F 63 (207)
T 3bjb_A 30 AAIELATEKELARVQMHEVAKR----AGVAIGTLYRYF 63 (207)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHcCcccCCHHHHHHH----hCCCHHHHHHHC
Confidence 4566777666 699999998 999999999884
No 336
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=33.03 E-value=16 Score=32.25 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=25.6
Q ss_pred HHHHHHHHhc---CCCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 217 YEAWKMWHED---GLSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 217 ~~T~~l~~~~---G~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
..+.++|.+. +.|+.+||+. -|++.+|||.|.
T Consensus 37 ~aA~~lf~~~G~~~~s~~~IA~~----aGvs~~tlY~~F 71 (226)
T 2pz9_A 37 AAAKEEFARHGIAGARVDRIAKQ----ARTSKERVYAYF 71 (226)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHH----TTSCHHHHHHHC
T ss_pred HHHHHHHHHhCcccCcHHHHHHH----HCCChHHHHHHc
Confidence 3455667655 5799999999 999999999884
No 337
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=33.01 E-value=17 Score=30.17 Aligned_cols=48 Identities=21% Similarity=0.088 Sum_probs=32.5
Q ss_pred CchHHHHHHHHHhc--CCCHHHHhcCCCC-CCCCChhhHHHHHHHHHHcCC
Q 044490 213 TPAKYEAWKMWHED--GLSIQKIANYPGR-SAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 213 ~~t~~~T~~l~~~~--G~si~eIA~~~~r-~R~L~~sTI~~HL~~~i~~G~ 260 (430)
|+.....++++.+. -+|.+||.+..+. .-+++.+|||..|..+...|.
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34444555555433 4688888765111 126899999999999999996
No 338
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=32.91 E-value=11 Score=31.97 Aligned_cols=31 Identities=13% Similarity=0.386 Sum_probs=24.9
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+||+.|.
T Consensus 18 aa~~lf~~~G~~~~t~~~IA~~----agvs~~tlY~~F 51 (197)
T 3rd3_A 18 TGYRIMAVKGFSGVGLNEILQS----AGVPKGSFYHYF 51 (197)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHH----HTCCHHHHTTTC
T ss_pred HHHHHHHHCCcccCCHHHHHHH----hCCChhhHHHHc
Confidence 4556776666 589999999 999999998763
No 339
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=32.59 E-value=22 Score=31.31 Aligned_cols=31 Identities=29% Similarity=0.285 Sum_probs=25.9
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+|||.|.
T Consensus 48 aA~~lf~~~G~~~~t~~~IA~~----Agvs~~t~Y~~F 81 (225)
T 2id3_A 48 AAGDALAADGFDALDLGEIARR----AGVGKTTVYRRW 81 (225)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HTCCHHHHHHHH
T ss_pred HHHHHHHHhCcccCCHHHHHHH----HCCCHHHHHHHC
Confidence 4566777665 899999999 999999999885
No 340
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=32.58 E-value=32 Score=28.44 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=35.2
Q ss_pred CCchHHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++.+....+..+ ...+.++.+||+. -+++.+||..+|..+...|.
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~----l~~s~~tvs~~l~~Le~~gl 90 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGER----LYLDSATLTPLLKRLQAAGL 90 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHH----hCCCcccHHHHHHHHHHCCC
Confidence 344444444433 4468899999998 89999999999999999996
No 341
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=32.44 E-value=28 Score=29.12 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 217 YEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 217 ~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.+...++. +|+|-.|||+. -+++..||..+-- +...|.
T Consensus 66 ~eV~klL~-~G~syreIA~~----~g~S~aTIsRv~r-~L~~g~ 103 (119)
T 3kor_A 66 LQVAKMIK-QGYTYATIEQE----SGASTATISRVKR-SLQWGN 103 (119)
T ss_dssp HHHHHHHH-HTCCHHHHHHH----HCCCHHHHHHHHH-HHHSSC
T ss_pred HHHHHHHH-cCCCHHHHHHH----HCCCHHHHHHHHH-HHhcCC
Confidence 45667777 99999999999 9999999988544 445563
No 342
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=32.35 E-value=46 Score=26.29 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=29.5
Q ss_pred hcCCCHHHHhcCCCCCC-CCChhhHHHHHHHHHHcCC
Q 044490 225 EDGLSIQKIANYPGRSA-PIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 225 ~~G~si~eIA~~~~r~R-~L~~sTI~~HL~~~i~~G~ 260 (430)
+.+.++.|||+. - +++.+|+..||..+...|.
T Consensus 25 ~~~~~~~eLa~~----l~~is~~tls~~L~~Le~~Gl 57 (107)
T 2hzt_A 25 HGKKRTSELKRL----MPNITQKMLTQQLRELEADGV 57 (107)
T ss_dssp TCCBCHHHHHHH----CTTSCHHHHHHHHHHHHHTTS
T ss_pred hCCCCHHHHHHH----hcCCCHHHHHHHHHHHHHCCC
Confidence 367999999987 7 9999999999999999996
No 343
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=32.26 E-value=20 Score=30.99 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=25.6
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|||.|.
T Consensus 23 aA~~lf~~~G~~~~s~~~IA~~----agvs~~t~Y~~F 56 (221)
T 3c2b_A 23 QALRLLVEGGEKALTTSGLARA----ANCSKESLYKWF 56 (221)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HTCCHHHHHHHH
T ss_pred HHHHHHHhCCcccCCHHHHHHH----hCCCHHHHHHhC
Confidence 4566776655 799999999 999999999884
No 344
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=32.21 E-value=15 Score=30.81 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=24.2
Q ss_pred HHHHHHhc---CCCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 219 AWKMWHED---GLSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 219 T~~l~~~~---G~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
+.++|.+. +.|+.+||+. -|++.+|||.|.
T Consensus 17 a~~l~~~~G~~~~t~~~Ia~~----agvs~~t~Y~~F 49 (195)
T 3pas_A 17 TVREVADHGFSATSVGKIAKA----AGLSPATLYIYY 49 (195)
T ss_dssp HHHHHHHHHHHHCCHHHHHHH----HTSCHHHHHHHC
T ss_pred HHHHHHHcChHhcCHHHHHHH----hCCCchHHHHHc
Confidence 44556554 4799999999 999999999884
No 345
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=32.11 E-value=22 Score=29.69 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=25.3
Q ss_pred HHHHHHHhc---CCCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHED---GLSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~---G~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+. +.|+.+||+. -|++.+||+.|.
T Consensus 18 aa~~l~~~~G~~~~t~~~IA~~----agvs~~t~Y~~F 51 (191)
T 3on4_A 18 VAEALIQKDGYNAFSFKDIATA----INIKTASIHYHF 51 (191)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHhCcccCCHHHHHHH----hCCCcchhhhcC
Confidence 455667655 4799999998 999999999884
No 346
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.07 E-value=14 Score=32.25 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=24.4
Q ss_pred HHHHHHhc---CCCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 219 AWKMWHED---GLSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 219 T~~l~~~~---G~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
+.++|.++ +.|+.+||+. -|++.+|||.|.
T Consensus 12 A~~lf~~~G~~~~s~~~IA~~----AGvskgtlY~hF 44 (208)
T 2g3b_A 12 SATAIAQRGIRGLRVNDVAEV----AGVSPGLLYYHF 44 (208)
T ss_dssp HHHHHHHHHHHHCCHHHHHHH----HTSCHHHHHHHH
T ss_pred HHHHHHHhCcccCCHHHHHHH----hCCCHHHHHHHC
Confidence 44556554 5799999999 999999999885
No 347
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=32.01 E-value=14 Score=32.04 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|||.|.
T Consensus 22 aA~~lf~~~G~~~~s~~~IA~~----agvsk~tlY~yF 55 (199)
T 3crj_A 22 ATYRALREHGYADLTIQRIADE----YGKSTAAVHYYY 55 (199)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHH----HTSCHHHHHTTC
T ss_pred HHHHHHHHcCcccCCHHHHHHH----hCCChhHHhhhc
Confidence 4566777666 699999999 999999998764
No 348
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=32.01 E-value=33 Score=29.14 Aligned_cols=45 Identities=7% Similarity=0.169 Sum_probs=35.6
Q ss_pred CCchHHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++.+....+..+ ...+.++.+||+. -+++.+||..+|..+...|.
T Consensus 43 lt~~~~~iL~~L~~~~~~t~~eLa~~----l~is~~tvs~~l~~Le~~Gl 88 (168)
T 2nyx_A 43 ITIPQFRTLVILSNHGPINLATLATL----LGVQPSATGRMVDRLVGAEL 88 (168)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHH----HTSCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHH----hCCCHHHHHHHHHHHHHCCC
Confidence 344444444433 4478999999999 99999999999999999996
No 349
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.83 E-value=21 Score=30.48 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=31.1
Q ss_pred CchHHHHHHHHHhc---CCCHHHHhcCCC-CCCCCChhhHHHHHHHHHHcCC
Q 044490 213 TPAKYEAWKMWHED---GLSIQKIANYPG-RSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 213 ~~t~~~T~~l~~~~---G~si~eIA~~~~-r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
|+.....++.+.+. -+|.+||.+.-+ +.-+++.+|||.+|..+...|.
T Consensus 16 T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 16 TLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 44444555555422 256777765411 0126899999999999999995
No 350
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=31.81 E-value=15 Score=33.07 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|||.|.
T Consensus 54 aA~~lf~~~G~~~~t~~~IA~~----aGvs~~t~Y~~F 87 (245)
T 3aqt_A 54 SARTLMAERGVDNVGIAEITEG----ANIGTGTFYNYF 87 (245)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----TTSCGGGGGGTC
T ss_pred HHHHHHHhcCcccCcHHHHHHH----hCCChHHHHHHc
Confidence 4566777666 699999999 999999998663
No 351
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=31.80 E-value=22 Score=30.34 Aligned_cols=31 Identities=13% Similarity=0.369 Sum_probs=25.1
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+..+|.+.| .|+.+||.. -|++.+|||.|.
T Consensus 22 aa~~l~~~~G~~~~ti~~IA~~----agvs~~t~Y~~F 55 (212)
T 3knw_A 22 SGFHLVLRKGFVGVGLQEILKT----SGVPKGSFYHYF 55 (212)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHcCCccCCHHHHHHH----hCCChHHHHHHC
Confidence 4556676655 689999998 999999999884
No 352
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=31.79 E-value=12 Score=31.57 Aligned_cols=31 Identities=10% Similarity=0.270 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|+|.|.
T Consensus 16 aa~~l~~~~G~~~~t~~~Ia~~----agvs~~t~Y~~F 49 (183)
T 1zk8_A 16 TAAEIADANGVQEVTLASLAQT----LGVRSPSLYNHV 49 (183)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HTSCHHHHTTTC
T ss_pred HHHHHHHhcCccccCHHHHHHH----cCCCchHHHHHc
Confidence 4566776665 899999999 999999998774
No 353
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=31.69 E-value=18 Score=30.73 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=24.9
Q ss_pred HHHHHHHhc---CCCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHED---GLSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~---G~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+. +.|+.+||+. -|++.+|+|.|.
T Consensus 25 aa~~lf~~~G~~~~ti~~Ia~~----agvs~~t~Y~~F 58 (208)
T 3cwr_A 25 AAQRLLSSGGAAAMTMEGVASE----AGIAKKTLYRFA 58 (208)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHcCHHhccHHHHHHH----hCCCHHHHHHHc
Confidence 455667655 5799999999 999999999883
No 354
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=31.60 E-value=20 Score=30.68 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=25.5
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+..+|.+.| .|+.+||+. -|++.+|||.|.
T Consensus 34 aA~~l~~~~G~~~~t~~~Ia~~----agvs~~t~Y~~F 67 (217)
T 3mvp_A 34 VAKDLFSDKTYFNVTTNEIAKK----ADVSVGTLYAYF 67 (217)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HTSCHHHHHHHC
T ss_pred HHHHHHHHcCccccCHHHHHHH----hCCChhHHHHHc
Confidence 4556776665 799999999 999999999884
No 355
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=31.43 E-value=24 Score=31.05 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=26.6
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
...++|.++| .|+.+||+. -|++.+|||.|..
T Consensus 47 AA~~lf~e~G~~~~tv~~IA~~----AGvs~~tlY~~F~ 81 (214)
T 2guh_A 47 AAGRAFATRPYREITLKDIAED----AGVSAPLIIKYFG 81 (214)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHH----HTSCHHHHHHHHS
T ss_pred HHHHHHHHcChhhcCHHHHHHH----hCCCHHHHHHHcC
Confidence 4566777666 799999998 9999999998853
No 356
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=31.41 E-value=42 Score=33.59 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee--cCc-cceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI--KDV-YRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~--~~~-y~~l~LT~kg~~~L~g 62 (430)
.++...+-++++.|...|||.... .+. --.|.||++|++++..
T Consensus 431 ~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~~ 476 (487)
T 1hsj_A 431 EFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQK 476 (487)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHHH
Confidence 478899999999999999998763 121 2368999999998764
No 357
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=31.36 E-value=30 Score=28.32 Aligned_cols=46 Identities=11% Similarity=0.180 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeec--Cc---cceEEeCcchHhhhcCCCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIK--DV---YRTVSVSQQGKQYLGSARP 65 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~--~~---y~~l~LT~kg~~~L~g~~k 65 (430)
.++...+-..++.|..+|||..... +. -..+.||++|++.|.....
T Consensus 44 ~i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~~~ 94 (117)
T 3elk_A 44 ALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDHSQ 94 (117)
T ss_dssp CCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTST
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHH
Confidence 4677899999999999999987621 11 1268999999999987643
No 358
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=31.16 E-value=21 Score=30.90 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=25.5
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|||.|.
T Consensus 17 AA~~lf~~~G~~~~s~~~IA~~----AGvs~gtlY~~F 50 (203)
T 2np5_A 17 ALFDVAAESGLEGASVREVAKR----AGVSIGAVQHHF 50 (203)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHhChhhccHHHHHHH----hCCCHHHHHHHc
Confidence 4556776655 789999998 999999999885
No 359
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=31.13 E-value=52 Score=28.96 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=28.5
Q ss_pred HhcCC--CHHHHhcCCCCCCCCC-hhhHHHHHHHHHHcCC
Q 044490 224 HEDGL--SIQKIANYPGRSAPIK-EQTVVDYLLEAVSEGF 260 (430)
Q Consensus 224 ~~~G~--si~eIA~~~~r~R~L~-~sTI~~HL~~~i~~G~ 260 (430)
.+.|+ |..|+|+. -+++ .+||..|+..+...|.
T Consensus 20 ~~~g~~ps~~elA~~----lgiss~~tv~~~~~~l~~~~~ 55 (202)
T 1jhf_A 20 SQTGMPPTRAEIAQR----LGFRSPNAAEEHLKALARKGV 55 (202)
T ss_dssp HHHSSCCCHHHHHHH----TTCSSHHHHHHHHHHHHHTTS
T ss_pred HHhCCCccHHHHHHH----hCCCChHHHHHHHHHHHHCCC
Confidence 33699 99999999 9998 9999999998888763
No 360
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=31.07 E-value=33 Score=27.90 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=34.8
Q ss_pred CCchHHHHHH-HHHh--cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWK-MWHE--DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~-l~~~--~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++.+....+. ++.. .+.++.+||+. -+++.+||...|..+...|.
T Consensus 35 lt~~q~~vL~~l~~~~~~~~t~~eLa~~----l~~~~~tvs~~l~~Le~~Gl 82 (127)
T 2frh_A 35 ISFEEFAVLTYISENKEKEYYLKDIINH----LNYKQPQVVKAVKILSQEDY 82 (127)
T ss_dssp CCHHHHHHHHHHHHTCCSEEEHHHHHHH----SSSHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHH----HCCCHHHHHHHHHHHHHCCC
Confidence 3344333333 3444 57899999998 99999999999999999996
No 361
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=31.07 E-value=38 Score=28.00 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=29.5
Q ss_pred CCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcch
Q 044490 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINW 264 (430)
Q Consensus 227 G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~ 264 (430)
+.|+.+||+. -+++.+||...|..+...|. +..
T Consensus 51 ~ps~~~LA~~----l~~s~~~V~~~l~~Le~kGl-I~~ 83 (128)
T 2vn2_A 51 FPTPAELAER----MTVSAAECMEMVRRLLQKGM-IAI 83 (128)
T ss_dssp SCCHHHHHHT----SSSCHHHHHHHHHHHHHTTS-SEE
T ss_pred CCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC-EEE
Confidence 3799999998 99999999999999999996 544
No 362
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=31.00 E-value=16 Score=29.39 Aligned_cols=101 Identities=17% Similarity=0.288 Sum_probs=60.0
Q ss_pred CCchHHHHHH-HHHhcCCCHHHHhcCCCCCCC----CChhhHHHHHHHHHHcCCCcchh---hhhhccCCCHH---HHHH
Q 044490 212 LTPAKYEAWK-MWHEDGLSIQKIANYPGRSAP----IKEQTVVDYLLEAVSEGFDINWT---RLCDEVGLTDE---IFSA 280 (430)
Q Consensus 212 l~~t~~~T~~-l~~~~G~si~eIA~~~~r~R~----L~~sTI~~HL~~~i~~G~~l~~~---~~i~~~~l~~e---~~~~ 280 (430)
+++.....+. ++...+.|+.+||+. -+ ++.+||..+|..+...|. +.-. +-.--+-+++. ....
T Consensus 8 lt~~~~~vL~~l~~~~~~t~~ela~~----l~~~~~~s~~tv~~~l~~L~~~Gl-v~r~~~~rr~~~~~lT~~g~~~~~~ 82 (123)
T 1okr_A 8 ISSAEWEVMNIIWMKKYASANNIIEE----IQMQKDWSPKTIRTLITRLYKKGF-IDRKKDNKIFQYYSLVEESDIKYKT 82 (123)
T ss_dssp CCHHHHHHHHHHHHHSSEEHHHHHHH----HHHHCCCCHHHHHHHHHHHHHHTS-EEEEEETTEEEEEESSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHH----HhccCCCcHhhHHHHHHHHHHCCC-eEEEecCCeEEEEEecCHHHHHHHH
Confidence 4555444443 344579999999987 55 779999999999999996 4321 10000123533 3444
Q ss_pred HHHHHHHhCCCCChHHHHHhCC--CCCCHHHHHHHHHHHH
Q 044490 281 IQEAISKVGCKDKLKPIKNELP--DDITYAHIKACLVMEN 318 (430)
Q Consensus 281 I~~a~~~~g~~~~LkpIke~l~--~~isY~~Irl~la~~~ 318 (430)
+...+..... .....+...+- ..++-.++..+...+.
T Consensus 83 ~~~~~~~~~~-~~~~~~~~~~~~~~~ls~ee~~~l~~~L~ 121 (123)
T 1okr_A 83 SKNFINKVYK-GGFNSLVLNFVEKEDLSQDEIEELRNILN 121 (123)
T ss_dssp HHHHHHHHST-TCHHHHHHHHHHHSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHC-CCHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 5555555431 34444444443 5578788877665543
No 363
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=30.83 E-value=23 Score=31.26 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=25.8
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
.+.++|.+.| .|+.+||+. -|++.+|||.|..
T Consensus 51 aA~~l~~~~G~~~~tv~~IA~~----AGvs~~t~Y~~F~ 85 (229)
T 3bni_A 51 ACADLLDEVGYDALSTRAVALR----ADVPIGSVYRFFG 85 (229)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHH----HTCCHHHHHHHCS
T ss_pred HHHHHHHhcChhhccHHHHHHH----HCCCchhHHHHcC
Confidence 4556776655 799999999 9999999998853
No 364
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=30.66 E-value=22 Score=33.14 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=29.4
Q ss_pred cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 226 ~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.++++.|||+. -++..+|+..||..+...|+
T Consensus 37 ~~~~~~eia~~----~gl~kstv~r~l~tL~~~G~ 67 (260)
T 2o0y_A 37 PTRSLKELVEG----TKLPKTTVVRLVATMCARSV 67 (260)
T ss_dssp SSBCHHHHHHH----HCCCHHHHHHHHHHHHHTTS
T ss_pred CCcCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 48999999998 99999999999999999996
No 365
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=30.59 E-value=19 Score=31.44 Aligned_cols=32 Identities=9% Similarity=0.195 Sum_probs=25.9
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
.+.++|.++| .|+.+||+. -|++.+|||.|..
T Consensus 17 aA~~lf~~~G~~~~s~~~IA~~----aGvs~gtlY~yF~ 51 (209)
T 2gfn_A 17 AVLALIAREGISAVTTRAVAEE----SGWSTGVLNHYFG 51 (209)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HSSCHHHHHHHTS
T ss_pred HHHHHHHHhCcccCCHHHHHHH----HCCCcchHHhcCC
Confidence 4556776655 699999999 9999999998853
No 366
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=30.56 E-value=40 Score=24.58 Aligned_cols=20 Identities=15% Similarity=0.410 Sum_probs=17.0
Q ss_pred CCHHHHhccCCCCHHHHHHH
Q 044490 150 STKARLANIDGVNQHLVITH 169 (430)
Q Consensus 150 ~T~~eL~~I~Gvg~~k~~ky 169 (430)
.+.++|..|+|||+.++...
T Consensus 43 a~~~~L~~i~Gig~~~a~~i 62 (75)
T 1x2i_A 43 ASVAELMKVEGIGEKIAKEI 62 (75)
T ss_dssp CCHHHHTTSTTCCHHHHHHH
T ss_pred CCHHHHhcCCCCCHHHHHHH
Confidence 36889999999999987765
No 367
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=30.55 E-value=26 Score=29.12 Aligned_cols=45 Identities=24% Similarity=0.421 Sum_probs=35.5
Q ss_pred CCchHHHHHHHH-H-hcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKMW-H-EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l~-~-~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++.+....+..+ . ..+.++.+||+. -+++.+||..++..+...|.
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~----l~i~~~tvs~~l~~Le~~Gl 91 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGA----LKVTNGNVSGLVNRLIKDGM 91 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHH----CSSCCSCHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHH----HCCChhhHHHHHHHHHHCCC
Confidence 344444444444 2 368999999998 99999999999999999996
No 368
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=30.50 E-value=32 Score=28.10 Aligned_cols=45 Identities=20% Similarity=0.411 Sum_probs=35.3
Q ss_pred CCchHHHHHHH-HHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 212 LTPAKYEAWKM-WHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 212 l~~t~~~T~~l-~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
++.+....+.. +...+.++.+||+. -+++.+||..++..+...|.
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~----l~~~~~tvs~~l~~L~~~gl 83 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQ----LYLDSGTLTPMLKRMEQQGL 83 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHT----TTCCHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHH----HCCCcCcHHHHHHHHHHCCC
Confidence 44444444433 34468899999998 99999999999999999996
No 369
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=30.49 E-value=19 Score=29.91 Aligned_cols=31 Identities=6% Similarity=0.094 Sum_probs=24.9
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+|||.|.
T Consensus 22 aa~~lf~~~G~~~~ti~~Ia~~----agvs~~t~Y~~F 55 (156)
T 3ljl_A 22 AVVDQLLRLGYDKMSYTTLSQQ----TGVSRTGISHHF 55 (156)
T ss_dssp HHHHHHHHTHHHHCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHhChhhcCHHHHHHH----HCCCHHHHHHHC
Confidence 3455666554 799999998 999999999885
No 370
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=30.42 E-value=22 Score=30.73 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=24.3
Q ss_pred HHHHHHhc---CCCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 219 AWKMWHED---GLSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 219 T~~l~~~~---G~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
+.++|.+. +.|+.+||+. -|++.+|+|.|.
T Consensus 12 A~~lf~~~G~~~~s~~~IA~~----Agvs~~t~Y~~F 44 (212)
T 3rh2_A 12 SLELFNEHGERTITTNHIAAH----LDISPGNLYYHF 44 (212)
T ss_dssp HHHHHHHHCGGGCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHcCcccCCHHHHHHH----hCCCHHHHHHHC
Confidence 45566555 4799999998 999999999884
No 371
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=30.41 E-value=40 Score=31.59 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=36.2
Q ss_pred CCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhhhhhccCCCHHHHHHHHHHHHHhCCC
Q 044490 228 LSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAISKVGCK 291 (430)
Q Consensus 228 ~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~~i~~~~l~~e~~~~I~~a~~~~g~~ 291 (430)
.|+.+||+. -|++.+||..-|- |. . +++++..+.|.++++++|+.
T Consensus 3 ~ti~dvA~~----agVS~~TVSrvln-----~~-----~-----~vs~~tr~rV~~aa~~lgY~ 47 (332)
T 2hsg_A 3 VTIYDVARE----ASVSMATVSRVVN-----GN-----P-----NVKPSTRKKVLETIERLGYR 47 (332)
T ss_dssp CCHHHHHHH----TTSCHHHHHHHHT-----TC-----T-----TSCHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHH----hCCCHHHHHHHHc-----CC-----C-----CCCHHHHHHHHHHHHHHCCC
Confidence 589999999 9999999966554 32 1 24899999999999999863
No 372
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=30.38 E-value=13 Score=31.81 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=24.4
Q ss_pred HHHHHHHhc---CCCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHED---GLSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~---G~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+. +.|+.+||+. -|++.+|||.|.
T Consensus 22 aa~~l~~~~G~~~~t~~~Ia~~----agvs~~t~Y~~F 55 (215)
T 3e7q_A 22 ATLACLKRHGFQGASVRKICAE----AGVSVGLINHHY 55 (215)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHcCcccCCHHHHHHH----hCCCHHHHHHHc
Confidence 344556544 5799999999 999999999883
No 373
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=30.37 E-value=42 Score=23.55 Aligned_cols=32 Identities=9% Similarity=0.115 Sum_probs=25.3
Q ss_pred HHHHHhcCCC----HHHHhcCCCCCCCCChhhHHHHHHHHH
Q 044490 220 WKMWHEDGLS----IQKIANYPGRSAPIKEQTVVDYLLEAV 256 (430)
Q Consensus 220 ~~l~~~~G~s----i~eIA~~~~r~R~L~~sTI~~HL~~~i 256 (430)
..++. .|.| +.+||.. -+++.+||...+..+-
T Consensus 15 ~~~~~-~g~s~~~~~~~vA~~----~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 15 LESYR-NDNDCKGNQRATARK----YNIHRRQIQKWLQCES 50 (59)
T ss_dssp HHHHH-HCTTTTTCHHHHHHH----TTSCHHHHHHHHTTHH
T ss_pred HHHHH-cCCCcchHHHHHHHH----HCcCHHHHHHHHHHHH
Confidence 34444 8999 9999998 9999999988776543
No 374
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=30.10 E-value=39 Score=34.04 Aligned_cols=44 Identities=9% Similarity=0.185 Sum_probs=30.4
Q ss_pred cCCCchHHHHHHHHHh----cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHH
Q 044490 210 TKLTPAKYEAWKMWHE----DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVS 257 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~----~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~ 257 (430)
..|++..+..+.|..- +|+|++|||+. -+++..||..++..+..
T Consensus 359 ~~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~----lgiS~erVrqi~~rAl~ 406 (423)
T 2a6h_F 359 SKLSEREAMVLKLRKGLIDGREHTLEEVGAF----FGVTRERIRQIENKALR 406 (423)
T ss_dssp HSSCHHHHHHHHHHHHTTCC-----CHHHHS----SSSCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHhccCCCCCCCHHHHHHH----HCcCHHHHHHHHHHHHH
Confidence 3567777777777654 68999999999 99999999888877754
No 375
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=29.77 E-value=18 Score=33.58 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 218 EAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 218 ~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
..+.|.. .+.|+++||+. -+++++||..||.++...|.
T Consensus 170 l~~~l~~-~~~t~~~la~~----~~l~~~~V~~~l~~L~~~~~ 207 (232)
T 2qlz_A 170 LHYLLLN-GRATVEELSDR----LNLKEREVREKISEMARFVP 207 (232)
T ss_dssp HHHHHHS-SEEEHHHHHHH----HTCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHhc-CCCCHHHHHHH----hCcCHHHHHHHHHHHHhcCC
Confidence 3444444 89999999998 99999999999999999995
No 376
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=29.71 E-value=27 Score=30.18 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=25.9
Q ss_pred HHHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 217 YEAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 217 ~~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.....+|.+.| -|+.+||+. -|++.+|||.|.
T Consensus 18 ~aA~~lF~~~Gy~~ts~~~IA~~----aGvsk~tlY~~F 52 (202)
T 2i10_A 18 QTAMELFWRQGYEGTSITDLTKA----LGINPPSLYAAF 52 (202)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHH----HTCCHHHHHHHH
T ss_pred HHHHHHHHHhCcccCCHHHHHHH----hCCChHHHHHHh
Confidence 34566776655 689999999 999999999885
No 377
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=29.65 E-value=13 Score=32.13 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=24.8
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|||.|.
T Consensus 19 aA~~lf~~~G~~~~s~~~IA~~----agvs~~t~Y~~F 52 (212)
T 2ras_A 19 VAQAIVEERGGAGLTLSELAAR----AGISQANLSRYF 52 (212)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHH----HTSCHHHHTTTC
T ss_pred HHHHHHHHhCcccCcHHHHHHH----hCCCHHHHHHHc
Confidence 4556676554 699999999 999999999764
No 378
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=29.58 E-value=37 Score=27.71 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=29.8
Q ss_pred hcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 225 ~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
..+.++.+||+. -+++.+||..++..+...|.
T Consensus 48 ~~~~t~~eLa~~----l~~~~~tvs~~l~~L~~~Gl 79 (140)
T 3hsr_A 48 DEKLNIKKLGER----VFLDSGTLTPLLKKLEKKDY 79 (140)
T ss_dssp TCEEEHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred cCCcCHHHHHHH----HCCChhhHHHHHHHHHHCCC
Confidence 468899999998 99999999999999999996
No 379
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=29.48 E-value=18 Score=30.74 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=25.0
Q ss_pred HHHHHHHhc---CCCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHED---GLSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~---G~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+. +.|+.+||+. -|++.+|+|.|.
T Consensus 28 aA~~l~~~~G~~~~t~~~Ia~~----agvs~~t~Y~~F 61 (203)
T 3mnl_A 28 ATMAIASKGGYEAVQMRAVADR----ADVAVGTLYRYF 61 (203)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHcCCccCCHHHHHHH----cCCChhHHHHHc
Confidence 345566655 5899999999 999999999884
No 380
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=29.30 E-value=18 Score=30.67 Aligned_cols=31 Identities=19% Similarity=0.487 Sum_probs=25.1
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+|+|.|.
T Consensus 19 aA~~lf~~~G~~~~s~~~Ia~~----agvs~~t~Y~~F 52 (203)
T 3b81_A 19 KIWDIFIANGYENTTLAFIINK----LGISKGALYHYF 52 (203)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHH----HTCCHHHHHTTC
T ss_pred HHHHHHHHcCcccCcHHHHHHH----hCCCchhHHHHc
Confidence 4556676665 699999999 999999998774
No 381
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=29.21 E-value=15 Score=33.03 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=25.5
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+|||.|.
T Consensus 26 AA~~lf~~~G~~~~t~~~IA~~----aGvs~~tlY~~F 59 (251)
T 3npi_A 26 IALSLFSELGFSDAKLEAIAKK----SGMSKRMIHYHF 59 (251)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHH----HCCCHHHHHHHH
T ss_pred HHHHHHHHcCccccCHHHHHHH----HCCCHHHHHHHc
Confidence 4556676655 699999999 999999999885
No 382
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=29.15 E-value=22 Score=30.67 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=25.0
Q ss_pred HHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 219 AWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 219 T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
+.++|.++| -|+.+||+. -|++.+|||.|..
T Consensus 14 A~~lf~~~Gy~~~s~~~IA~~----AgvskgtlY~yF~ 47 (202)
T 2id6_A 14 AVEVFGKKGYDRATTDEIAEK----AGVAKGLIFHYFK 47 (202)
T ss_dssp HHHHHHHHHHHHCCHHHHHHH----HTCCTHHHHHHHS
T ss_pred HHHHHHHcCcccCCHHHHHHH----hCCCHHHHHHHcC
Confidence 455665554 799999998 9999999998863
No 383
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=29.12 E-value=41 Score=34.25 Aligned_cols=45 Identities=11% Similarity=0.210 Sum_probs=35.5
Q ss_pred cCCCchHHHHHHHHHh----cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHc
Q 044490 210 TKLTPAKYEAWKMWHE----DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSE 258 (430)
Q Consensus 210 ~~l~~t~~~T~~l~~~----~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~ 258 (430)
..|++..+..+.|..- +|+|++|||+. -+++..||..++..+...
T Consensus 374 ~~L~ereR~VI~LRygL~~~e~~TleEIAe~----LgIS~erVRqi~~RAlkK 422 (438)
T 1l9z_H 374 SKLSEREAMVLKLRKGLIDGREHTLEEVGAY----FGVTRERIRQIENKALRK 422 (438)
T ss_pred HhCCHHHHHHHHHHHhccCCCCCCHHHHHHH----HCcCHHHHHHHHHHHHHH
Confidence 4567777777777654 68999999999 999999999888877543
No 384
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=28.94 E-value=23 Score=31.03 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=26.0
Q ss_pred HHHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 217 YEAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 217 ~~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
..+.++|.+.| .|+.+||+. -|++.+|||.|.
T Consensus 42 ~aA~~lf~~~G~~~~t~~~IA~~----AGvs~~tlY~~F 76 (221)
T 3g7r_A 42 GTATRIFYAEGIHSVGIDRITAE----AQVTRATLYRHF 76 (221)
T ss_dssp HHHHHHHHHHCSTTSCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHHhCcccCCHHHHHHH----hCCCHHHHHHHC
Confidence 34566777665 799999998 999999999874
No 385
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=28.93 E-value=30 Score=30.19 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 217 YEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 217 ~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
...++++. +|+|+.+||.. -+++.+||+.+|.
T Consensus 149 ~~i~~~~~-~G~s~~~Ia~~----l~is~~tv~r~l~ 180 (183)
T 1gdt_A 149 DAVLNMWQ-QGLGASHISKT----MNIARSTVYKVIN 180 (183)
T ss_dssp HHHHHHHH-TTCCHHHHHHH----HTCCHHHHHHHHH
T ss_pred HHHHHHHH-CCCCHHHHHHH----HCcCHHHHHHHHh
Confidence 35577887 99999999998 8999999998774
No 386
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=28.79 E-value=23 Score=31.62 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+..+|.+.| .|+.+||+. -|++.+|||.|.
T Consensus 31 aA~~lf~~~G~~~~s~~~IA~~----agvs~~tlY~~F 64 (231)
T 2zcx_A 31 AARELGTERGIREITLTDIAAT----VGMHKSALLRYF 64 (231)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHH----HTSCHHHHHHHC
T ss_pred HHHHHHHhCCcccCCHHHHHHH----hCCCHHHHHHhC
Confidence 3556776666 699999998 999999999885
No 387
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=28.78 E-value=24 Score=30.92 Aligned_cols=31 Identities=13% Similarity=0.303 Sum_probs=24.8
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+|+|.|.
T Consensus 13 aA~~lf~~~G~~~~t~~~IA~~----Agvs~~t~Y~~F 46 (228)
T 3nnr_A 13 SSLELFNDKGERNITTNHIAAH----LAISPGNLYYHF 46 (228)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHhChhhcCHHHHHHH----hCCCCccchhcC
Confidence 3455666555 799999998 999999999874
No 388
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=28.73 E-value=67 Score=25.65 Aligned_cols=38 Identities=8% Similarity=0.143 Sum_probs=30.7
Q ss_pred HHHHHHhcCCC--HHHHhcCCCCCC-CCChhhHHHHHHHHHHcCC
Q 044490 219 AWKMWHEDGLS--IQKIANYPGRSA-PIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 219 T~~l~~~~G~s--i~eIA~~~~r~R-~L~~sTI~~HL~~~i~~G~ 260 (430)
.+..+.....+ +.|||+. - +++.+|+..||..+...|.
T Consensus 32 IL~~L~~g~~~~~~~eL~~~----l~gis~~~ls~~L~~Le~~Gl 72 (111)
T 3df8_A 32 IISVLGNGSTRQNFNDIRSS----IPGISSTILSRRIKDLIDSGL 72 (111)
T ss_dssp HHHHHTSSSSCBCHHHHHHT----STTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCCCCCHHHHHHH----ccCCCHHHHHHHHHHHHHCCC
Confidence 33333424566 9999998 8 8999999999999999995
No 389
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=28.61 E-value=19 Score=30.73 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=25.1
Q ss_pred HHHHHHhc---CCCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 219 AWKMWHED---GLSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 219 T~~l~~~~---G~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
+.++|.+. |.|+.+||+. -|++.+|||.|..
T Consensus 27 A~~lf~~~G~~~~s~~~IA~~----aGvs~~tlY~~F~ 60 (212)
T 3loc_A 27 ALDTFSQFGFHGTRLEQIAEL----AGVSKTNLLYYFP 60 (212)
T ss_dssp HHHHHHHHHHHHCCHHHHHHH----HTSCHHHHHHHSS
T ss_pred HHHHHHHhCcccCCHHHHHHH----HCcCHHHHhhhCC
Confidence 45566554 5889999999 9999999998863
No 390
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=28.55 E-value=25 Score=32.65 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=29.1
Q ss_pred cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 226 ~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.++++.|||+. -+++.+|+..||..+...|+
T Consensus 28 ~~~~~~eia~~----~gl~~stv~r~l~~L~~~G~ 58 (257)
T 2g7u_A 28 PNPTLAELATE----AGLSRPAVRRILLTLQKLGY 58 (257)
T ss_dssp SSCBHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 47999999998 99999999999999999996
No 391
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=28.55 E-value=63 Score=28.10 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCceeee-c-Cc---cceEEeCcchHhhhcCCC
Q 044490 18 GKDHSSNWWKTLAYQLISYGYLTETI-K-DV---YRTVSVSQQGKQYLGSAR 64 (430)
Q Consensus 18 Gk~ls~~~wk~li~qLi~~GyL~e~~-~-~~---y~~l~LT~kg~~~L~g~~ 64 (430)
.-..+...+-..++.|...|+|.... . ++ -..+.||++|++.+....
T Consensus 32 ~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~~~~ 83 (179)
T 1yg2_A 32 FWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWF 83 (179)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHHH
T ss_pred ccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHHHHHH
Confidence 34689999999999999999998652 1 11 136899999999988653
No 392
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=28.54 E-value=19 Score=30.33 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=24.6
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+||+.|.
T Consensus 15 aa~~l~~~~G~~~~t~~~IA~~----agvs~~t~Y~~F 48 (199)
T 3qbm_A 15 QAAALFNVSGYAGTAISDIMAA----TGLEKGGIYRHF 48 (199)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHH----HTCCHHHHHTTC
T ss_pred HHHHHHHHhCcCcCCHHHHHHH----hCCCccHHHHhC
Confidence 3455666554 789999999 999999998773
No 393
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=28.35 E-value=17 Score=30.61 Aligned_cols=31 Identities=39% Similarity=0.516 Sum_probs=24.9
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+..+|.+.| .|+.+||+. -|++.+|+|.|.
T Consensus 19 aa~~lf~~~G~~~~tv~~Ia~~----agvs~~t~Y~~F 52 (196)
T 3he0_A 19 AAEQLIAESGFQGLSMQKLANE----AGVAAGTIYRYF 52 (196)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHH----HTSCHHHHHTTC
T ss_pred HHHHHHHHhCcccCCHHHHHHH----hCCCcchHHHhc
Confidence 4556776654 789999998 999999998764
No 394
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=27.59 E-value=24 Score=26.49 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=21.6
Q ss_pred HHhcCCCHHHHhcCCCCCCCCChhhHHHH
Q 044490 223 WHEDGLSIQKIANYPGRSAPIKEQTVVDY 251 (430)
Q Consensus 223 ~~~~G~si~eIA~~~~r~R~L~~sTI~~H 251 (430)
+.+.|+|+.++|.. -|++.+||...
T Consensus 18 l~~~glT~~~LA~~----~Gvs~stls~~ 42 (74)
T 1neq_A 18 LKKRKLSLSALSRQ----FGYAPTTLANA 42 (74)
T ss_dssp HHTTSCCHHHHHHH----HSSCHHHHHHT
T ss_pred HHHcCCCHHHHHHH----HCcCHHHHHHH
Confidence 44589999999998 99999999754
No 395
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=27.24 E-value=26 Score=24.64 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=21.3
Q ss_pred cCCCHHHHhcCCCCCC-----CCChhhHHHHHHHH
Q 044490 226 DGLSIQKIANYPGRSA-----PIKEQTVVDYLLEA 255 (430)
Q Consensus 226 ~G~si~eIA~~~~r~R-----~L~~sTI~~HL~~~ 255 (430)
...|++||++. - +++.+||+.+|.++
T Consensus 18 ~~~t~~el~~~----l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 18 EIETQDELVDM----LKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp CCCSHHHHHHH----HHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHH----HHHhCCCcCHHHHHHHHHHc
Confidence 45788899887 5 89999999999843
No 396
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=27.23 E-value=41 Score=25.21 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=17.7
Q ss_pred CHHHHhccCCCCHHHHHHHHH
Q 044490 151 TKARLANIDGVNQHLVITHGD 171 (430)
Q Consensus 151 T~~eL~~I~Gvg~~k~~kyG~ 171 (430)
+.++|.+|+|||+.++...-.
T Consensus 54 ~~eeL~~i~GIG~~~a~~I~~ 74 (78)
T 1kft_A 54 SVEEIAKVPGISQGLAEKIFW 74 (78)
T ss_dssp CHHHHTTSSSTTSHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHH
Confidence 678999999999998877643
No 397
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=27.23 E-value=23 Score=31.81 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=25.8
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+|||.|.
T Consensus 51 AA~~lf~~~G~~~~t~~~IA~~----aGvs~~tlY~~F 84 (255)
T 3g1o_A 51 TAENLLEDRPLADISVDDLAKG----AGISRPTFYFYF 84 (255)
T ss_dssp HHHHHHTTSCGGGCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHHcCCccCcHHHHHHH----hCCCHHHHHHHc
Confidence 4667787666 599999998 999999999883
No 398
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=27.20 E-value=32 Score=32.32 Aligned_cols=40 Identities=5% Similarity=0.105 Sum_probs=31.8
Q ss_pred HHHHHHHHh--cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 217 YEAWKMWHE--DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 217 ~~T~~l~~~--~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
...+++|.. .++++.|||+. -++..+|++.+|..+...|+
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~----lgl~ksTv~RlL~tL~~~G~ 74 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRF----LDLPKSSAHGLLAVMTELDL 74 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHH----HTCC--CHHHHHHHHHHTTS
T ss_pred HHHHHHHhhCCCCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 345556653 36899999998 99999999999999999997
No 399
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=27.16 E-value=26 Score=30.68 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=25.9
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
-+..+|.+.| .|+.+||.. -|++.+|||.|..
T Consensus 22 AA~~lf~~~G~~~~s~~~IA~~----AGvs~~tlY~~F~ 56 (208)
T 3v6g_A 22 AAERVIARQGLGGLSHRRVAAE----ANVPVGSTTYYFN 56 (208)
T ss_dssp HHHHHHHHHCTTCCCHHHHHHH----HTSCHHHHHHHCS
T ss_pred HHHHHHHHhCcccCCHHHHHHH----hCCCchhHHHHcC
Confidence 4566777665 689999998 9999999998853
No 400
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=27.12 E-value=34 Score=28.14 Aligned_cols=33 Identities=9% Similarity=0.161 Sum_probs=30.5
Q ss_pred cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcc
Q 044490 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDIN 263 (430)
Q Consensus 226 ~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~ 263 (430)
.+.++.+||+. -+++.+||..+|..+...|. +.
T Consensus 21 ~~~~~~ela~~----l~vs~~tvs~~l~~Le~~Gl-v~ 53 (142)
T 1on2_A 21 GYARVSDIAEA----LAVHPSSVTKMVQKLDKDEY-LI 53 (142)
T ss_dssp SSCCHHHHHHH----HTSCHHHHHHHHHHHHHTTS-EE
T ss_pred CCCCHHHHHHH----hCCCHHHHHHHHHHHHHCCC-EE
Confidence 78999999999 99999999999999999996 54
No 401
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=27.00 E-value=58 Score=29.31 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=38.8
Q ss_pred cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhhhhhccCCCHHHHHHHHHHHH
Q 044490 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGLTDEIFSAIQEAIS 286 (430)
Q Consensus 226 ~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~~i~~~~l~~e~~~~I~~a~~ 286 (430)
.+.+..+||+. -+++.+||..+|..+...|. +..... ..+-||++=.+.....++
T Consensus 19 ~~~~~~~lA~~----l~vs~~tvs~~l~~Le~~Gl-V~r~~~-~~i~LT~~G~~~~~~~~~ 73 (214)
T 3hrs_A 19 NKITNKEIAQL----MQVSPPAVTEMMKKLLAEEL-LIKDKK-AGYLLTDLGLKLVSDLYR 73 (214)
T ss_dssp SCCCHHHHHHH----HTCCHHHHHHHHHHHHHTTS-EEEETT-TEEEECHHHHHHHHHHHH
T ss_pred CCcCHHHHHHH----HCCChhHHHHHHHHHHHCCC-EEEecC-CCeEECHHHHHHHHHHHH
Confidence 46899999998 99999999999999999996 554331 012347654444444333
No 402
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=26.75 E-value=13 Score=32.25 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee---cCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI---KDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~---~~~y~~l~LT~kg~~~L~g 62 (430)
.+++..+..+++.|...|||.... +.....+.||++|+.++..
T Consensus 97 ~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~ 142 (181)
T 2fbk_A 97 AISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTH 142 (181)
T ss_dssp SCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 367777788999999999998752 1112358999999999874
No 403
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=26.67 E-value=19 Score=30.95 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+..+|.+.| .|+.+||+. -|++.+|||.|.
T Consensus 21 aA~~lf~~~G~~~~t~~~IA~~----agvs~~tlY~~F 54 (217)
T 3nrg_A 21 VLLDEFAQNDYDSVSINRITER----AGIAKGSFYQYF 54 (217)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHH----HTCCTTGGGGTC
T ss_pred HHHHHHHhcCcccCCHHHHHHH----hCCcHHHHHHHc
Confidence 4566777666 799999999 999999998764
No 404
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=26.57 E-value=33 Score=27.84 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=33.8
Q ss_pred CCH-HHHHHHHHHHHHcCCceeee-c-Cc--cceEEeCcchHhhhcCC
Q 044490 21 HSS-NWWKTLAYQLISYGYLTETI-K-DV--YRTVSVSQQGKQYLGSA 63 (430)
Q Consensus 21 ls~-~~wk~li~qLi~~GyL~e~~-~-~~--y~~l~LT~kg~~~L~g~ 63 (430)
++. ..+-..++.|...|||.... . ++ -..+.||++|++.+...
T Consensus 46 is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~~ 93 (118)
T 2esh_A 46 IGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREI 93 (118)
T ss_dssp CCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHHH
Confidence 677 88899999999999998762 1 11 12589999999998753
No 405
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=26.40 E-value=46 Score=32.02 Aligned_cols=44 Identities=7% Similarity=0.034 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhc-CCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCc
Q 044490 215 AKYEAWKMWHED-GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDI 262 (430)
Q Consensus 215 t~~~T~~l~~~~-G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l 262 (430)
....-+.+++.. ..|..+||+. -+++..||..||..+...|..+
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~----l~vS~~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGET----LGMSRAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHH----HTSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHH----HCCCHHHHHHHHHHHHhCCCcE
Confidence 344556666523 3899999999 9999999999999999999755
No 406
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=26.39 E-value=18 Score=33.71 Aligned_cols=31 Identities=16% Similarity=0.317 Sum_probs=29.4
Q ss_pred cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 226 ~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.++|+.|||+. -++..+|++.+|..+...|+
T Consensus 20 ~~lsl~eia~~----lgl~ksT~~RlL~tL~~~G~ 50 (260)
T 3r4k_A 20 LEIGLSDLTRL----SGMNKATVYRLMSELQEAGF 50 (260)
T ss_dssp SEEEHHHHHHH----HCSCHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 57899999998 99999999999999999997
No 407
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=26.37 E-value=76 Score=24.27 Aligned_cols=34 Identities=15% Similarity=-0.028 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchH
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGK 57 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~ 57 (430)
++++.-+.+.++.|...|+|... . +.+.||+.|.
T Consensus 54 ~is~~tv~~~L~~L~~~Glv~~~-~---g~y~l~~~g~ 87 (96)
T 1y0u_A 54 SLSKKQLDYHLKVLEAGFCIERV-G---ERWVVTDAGK 87 (96)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEE-T---TEEEECTTTC
T ss_pred CcCHHHHHHHHHHHHHCCCEEEE-C---CEEEECCCch
Confidence 47899999999999999999977 4 4889999764
No 408
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=25.95 E-value=87 Score=24.70 Aligned_cols=41 Identities=10% Similarity=-0.042 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhh
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L 60 (430)
++++.-+...++.|...|+|.....+.+..+.+++.+..-+
T Consensus 49 gis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l 89 (108)
T 2kko_A 49 GMNLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARL 89 (108)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHH
Confidence 47889999999999999999875234445789999875444
No 409
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=25.89 E-value=16 Score=31.17 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=24.3
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDY 251 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~H 251 (430)
.+.++|.+.| .|+.+||+. -|++.+|+|.|
T Consensus 24 aa~~l~~~~G~~~~t~~~Ia~~----agvs~~t~Y~~ 56 (211)
T 3him_A 24 AAIEVFAAKGYGATTTREIAAS----LDMSPGAVYPH 56 (211)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHH----TTCCTTSSTTT
T ss_pred HHHHHHHHcCCCcCCHHHHHHH----hCCCcChhhhc
Confidence 4556776655 799999998 99999998866
No 410
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=25.87 E-value=74 Score=25.80 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccce------EEeCcchHhhhcCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRT------VSVSQQGKQYLGSA 63 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~------l~LT~kg~~~L~g~ 63 (430)
+.|+..|..+++.|+.+|||.=..-..++. ..+|.+|-+.|...
T Consensus 27 ~Ise~~~~~il~~L~d~GyI~Gv~~~~~~~~i~~~~~~IT~~GleYL~EN 76 (102)
T 2hgc_A 27 GVTEDQFDDAVNFLKREGYIIGVHYSDDRPHLYKLGPELTEKGENYLKEN 76 (102)
T ss_dssp TSCHHHHHHHHHHHHHHTSEECCEESSSSEECCSSCCEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCccceEEEeCcceeeccCceECHHHHHHHHHC
Confidence 479999999999999999998541011122 46899999999854
No 411
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=25.86 E-value=1.2e+02 Score=23.11 Aligned_cols=41 Identities=10% Similarity=-0.041 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhh
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYL 60 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L 60 (430)
++++.-+...++.|...|++.....+.+..+.+++.+...+
T Consensus 47 ~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l 87 (98)
T 3jth_A 47 QLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAM 87 (98)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHH
Confidence 47889999999999999999876233445789998776544
No 412
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=25.70 E-value=71 Score=28.81 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGSA 63 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g~ 63 (430)
++|+.-+-+.++.|...||+..........+.||++|+.++...
T Consensus 38 ~isq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~~ 81 (230)
T 3cta_A 38 GISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTE 81 (230)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHHH
Confidence 47899999999999999999875222235799999999998754
No 413
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=25.68 E-value=22 Score=33.27 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=29.0
Q ss_pred cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 226 ~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.++++.|||+. -++..+|+..||..+...|+
T Consensus 35 ~~~~~~eia~~----~gl~~stv~r~l~tL~~~G~ 65 (265)
T 2ia2_A 35 QRRTLSDVARA----TDLTRATARRFLLTLVELGY 65 (265)
T ss_dssp SSEEHHHHHHH----HTCCHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 47899999998 99999999999999999996
No 414
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=25.67 E-value=16 Score=32.31 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=22.6
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
.+.++|.++| .|+.+||+. -|++.+|||.|..
T Consensus 43 AA~~lf~~~G~~~~s~~~IA~~----AGvs~~tlY~~F~ 77 (237)
T 3kkd_A 43 AAMRLIVRDGVRAVRHRAVAAE----AQVPLSATTYYFK 77 (237)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HTSCTTTC-----
T ss_pred HHHHHHHhcChhhcCHHHHHHH----hCCChhHHHHHcC
Confidence 4566777666 599999998 9999999998854
No 415
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=25.60 E-value=61 Score=24.00 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=17.5
Q ss_pred CCHHHHhccCCCCHHHHHHH
Q 044490 150 STKARLANIDGVNQHLVITH 169 (430)
Q Consensus 150 ~T~~eL~~I~Gvg~~k~~ky 169 (430)
.+.++|.+++|+|+.++++.
T Consensus 50 ~s~~eL~~v~Gig~k~~~~i 69 (75)
T 2duy_A 50 ARVEDLLKVKGIGPATLERL 69 (75)
T ss_dssp SSGGGGGGSTTCCHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHH
Confidence 78899999999999988775
No 416
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=25.44 E-value=1.1e+02 Score=27.18 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=46.6
Q ss_pred CCchHHHHHH-HHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcchhh-----hhhccCCCHHHHHHHHHHH
Q 044490 212 LTPAKYEAWK-MWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTR-----LCDEVGLTDEIFSAIQEAI 285 (430)
Q Consensus 212 l~~t~~~T~~-l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~~~-----~i~~~~l~~e~~~~I~~a~ 285 (430)
++.+....+. ++...+.|+.+||+. -+++.+||...|..+...|. +.-.. =.-.+-||++=...+..+.
T Consensus 46 Lt~~q~~iL~~L~~~~~~t~~eLa~~----l~i~~stvs~~l~~Le~~Gl-V~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 120 (207)
T 2fxa_A 46 LNINEHHILWIAYQLNGASISEIAKF----GVMHVSTAFNFSKKLEERGY-LRFSKRLNDKRNTYVQLTEEGTEVFWSLL 120 (207)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHH----TTCCHHHHHHHHHHHHHHTS-EEEECC------CEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHH----HCCCHHHHHHHHHHHHHCCC-EEEecCCCCCceEEEEECHHHHHHHHHHH
Confidence 4444444444 344478999999999 99999999999999999996 43211 0001235776555555544
Q ss_pred HH
Q 044490 286 SK 287 (430)
Q Consensus 286 ~~ 287 (430)
..
T Consensus 121 ~~ 122 (207)
T 2fxa_A 121 EE 122 (207)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 417
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=25.41 E-value=99 Score=24.69 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g 62 (430)
++++.-+...++.|...|+|.....+.+..+.||+.|...+..
T Consensus 42 ~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~ 84 (118)
T 3f6o_A 42 DMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEA 84 (118)
T ss_dssp CSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHH
Confidence 5789999999999999999987633444579999999877654
No 418
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=25.22 E-value=84 Score=26.76 Aligned_cols=43 Identities=19% Similarity=0.125 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchHhhhcC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGKQYLGS 62 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~~~L~g 62 (430)
++++.-+...++.|...|+|.....+.+..+.||+.|...|..
T Consensus 82 gls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~ 124 (151)
T 3f6v_A 82 PASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRA 124 (151)
T ss_dssp SSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHH
Confidence 4789999999999999999987633444578999999887764
No 419
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=25.00 E-value=20 Score=30.21 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=23.6
Q ss_pred HHHHHHhc---CCCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 219 AWKMWHED---GLSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 219 T~~l~~~~---G~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
+.++|.+. +.|+.+||+. -|++.+|++.|.
T Consensus 12 a~~l~~~~G~~~~ti~~IA~~----agvs~~t~Y~~F 44 (189)
T 3geu_A 12 AITLFSEKGYDGTTLDDIAKS----VNIKKASLYYHF 44 (189)
T ss_dssp HHHHHHHHHHHHCCHHHHHHH----TTCCHHHHTTTC
T ss_pred HHHHHHHcCcccCCHHHHHHH----hCCCHHHHHHHh
Confidence 44455544 5899999999 999999998774
No 420
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=24.93 E-value=15 Score=32.53 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHH
Q 044490 216 KYEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLE 254 (430)
Q Consensus 216 ~~~T~~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~ 254 (430)
....+.++. +|+|+.+||.. -+++.+|++.++..
T Consensus 148 v~~i~~l~~-~G~s~~~Ia~~----l~vs~~T~yr~l~~ 181 (193)
T 3plo_X 148 WEQAGRLLA-QGIPRKQVALI----YDVALSTLYKKHPA 181 (193)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHH-CCCCHHHHHHH----HCcCHHHHHHHHhh
Confidence 446677887 89999999998 89999999988765
No 421
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=24.88 E-value=23 Score=29.77 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=24.0
Q ss_pred HHHHHHh-cCCCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 219 AWKMWHE-DGLSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 219 T~~l~~~-~G~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
+.++|.+ .+.|+.+||+. -|++.+|+|.|.
T Consensus 23 A~~lf~~~~~~t~~~Ia~~----agvs~~t~Y~~F 53 (190)
T 2v57_A 23 AMLVLADHPTAALGDIAAA----AGVGRSTVHRYY 53 (190)
T ss_dssp HHHHHTTCTTCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHHcCCCCHHHHHHH----hCCCHHHHHHHc
Confidence 3445532 68999999999 999999999885
No 422
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=24.54 E-value=1e+02 Score=22.27 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVS 53 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT 53 (430)
++++..+.+++..|...|||... .. +++.|+
T Consensus 36 glsr~tv~~~l~~L~~~G~I~~~-~~--G~y~lg 66 (67)
T 2heo_A 36 QVPKKTLNQVLYRLKKEDRVSSP-SP--KYWSIG 66 (67)
T ss_dssp CSCHHHHHHHHHHHHHTTSEEEE-ET--TEEEEC
T ss_pred CcCHHHHHHHHHHHHHCCcEecC-CC--ceEeeC
Confidence 47899999999999999998654 33 345544
No 423
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=24.53 E-value=31 Score=31.19 Aligned_cols=31 Identities=23% Similarity=0.521 Sum_probs=25.5
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -+++.+|||.|.
T Consensus 56 AA~~lf~e~G~~~~Ti~~IA~~----AGvs~~t~Y~yF 89 (260)
T 2of7_A 56 ATYGLIRQQGYEATTVEQIAER----AEVSPSTVLRYF 89 (260)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHH----HTSCHHHHHHHC
T ss_pred HHHHHHHHhCcccccHHHHHHH----hCCChHHHHHHc
Confidence 4556776665 689999999 999999999984
No 424
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=23.97 E-value=61 Score=24.84 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=16.9
Q ss_pred CCHHHHhccCCCCHHHHHHH
Q 044490 150 STKARLANIDGVNQHLVITH 169 (430)
Q Consensus 150 ~T~~eL~~I~Gvg~~k~~ky 169 (430)
.+.++|.+|+|||+.+++..
T Consensus 48 a~~~eL~~i~GIG~~~a~~I 67 (89)
T 1z00_A 48 ASREDLALCPGLGPQKARRL 67 (89)
T ss_dssp CCHHHHHTSTTCCHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHH
Confidence 46789999999999987664
No 425
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=23.82 E-value=22 Score=31.40 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=25.5
Q ss_pred HHHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHH
Q 044490 217 YEAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDY 251 (430)
Q Consensus 217 ~~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~H 251 (430)
..+.++|.+.| .|+.+||+. -|++.+|+|.|
T Consensus 37 ~aA~~lf~~~G~~~~t~~~IA~~----Agvs~~t~Y~~ 70 (230)
T 2iai_A 37 SVAVQVFIERGYDGTSMEHLSKA----AGISKSSIYHH 70 (230)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHH----HTSCHHHHTTT
T ss_pred HHHHHHHHHcCccccCHHHHHHH----HCCChhHHHHh
Confidence 45667787665 589999999 99999999876
No 426
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=23.78 E-value=29 Score=27.82 Aligned_cols=105 Identities=10% Similarity=0.205 Sum_probs=60.1
Q ss_pred CCchHHHHH-HHHHhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcch----hhhhhccCCCHHH--HHHHHHH
Q 044490 212 LTPAKYEAW-KMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINW----TRLCDEVGLTDEI--FSAIQEA 284 (430)
Q Consensus 212 l~~t~~~T~-~l~~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~----~~~i~~~~l~~e~--~~~I~~a 284 (430)
++++....+ .+|...+.|+.+||+.-...++++.+||..-|-.+...|. +.- .+++-..-++++. ...+...
T Consensus 8 Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGl-v~R~~~~r~~~~~~~~~~~~~~~~~~~~~ 86 (126)
T 1sd4_A 8 ISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEI-IKRYKSENIYFYSSNIKEDDIKMKTAKTF 86 (126)
T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTS-EEEEEETTEEEEEECSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCc-eEEEeCCCeEEEEEecCHHHHHHHHHHHH
Confidence 455543333 3566568999999987222235789999999999999996 431 1111001134433 2344455
Q ss_pred HHHhCCCCChHHHHHhCC--CCCCHHHHHHHHHHHH
Q 044490 285 ISKVGCKDKLKPIKNELP--DDITYAHIKACLVMEN 318 (430)
Q Consensus 285 ~~~~g~~~~LkpIke~l~--~~isY~~Irl~la~~~ 318 (430)
+..+-. .....+...+- ..+|-.++......++
T Consensus 87 ~~~~~~-~~~~~~~~~~~~~~~ls~ee~~~l~~~L~ 121 (126)
T 1sd4_A 87 LNKLYG-GDMKSLVLNFAKNEELNNKEIEELRDILN 121 (126)
T ss_dssp HHHHHT-TCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHC-CCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 554321 23344444433 5688888887665544
No 427
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=23.71 E-value=36 Score=31.32 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=25.7
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++| .|+.+||+. -|++.+|+|.|.
T Consensus 49 AA~~lf~e~G~~~~S~~~IA~~----AGVs~~tlY~hF 82 (273)
T 3c07_A 49 TAMRLFQERGYDRTTMRAIAQE----AGVSVGNAYYYF 82 (273)
T ss_dssp HHHHHHHHTCSTTCCHHHHHHH----HTSCHHHHHHHC
T ss_pred HHHHHHHhCCccccCHHHHHHH----HCCCHHHHHHHc
Confidence 4556777666 689999999 999999999885
No 428
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=23.60 E-value=13 Score=31.49 Aligned_cols=31 Identities=6% Similarity=0.233 Sum_probs=24.2
Q ss_pred HHHHHHHhc---CCCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHED---GLSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~---G~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+. +.|+.+||+. -|++.+|||.|.
T Consensus 19 aA~~lf~~~G~~~~ti~~IA~~----agvs~~t~Y~~F 52 (204)
T 3eup_A 19 STAPVFNVKGLAGTSLTDLTEA----TNLTKGSIYGNF 52 (204)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHH----HTCCHHHHTTTS
T ss_pred HHHHHHHHcCcccCCHHHHHHH----hCCCcHHHHHhC
Confidence 345566544 5799999998 999999998774
No 429
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=23.34 E-value=49 Score=29.09 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=25.3
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
....+|.+.| .|+.+||+. -|++.+|+|.|.
T Consensus 15 aA~~l~~~~G~~~~tv~~Ia~~----agvs~~t~y~~F 48 (213)
T 3ni7_A 15 TAVELAAHTSWEAVRLYDIAAR----LAVSLDEIRLYF 48 (213)
T ss_dssp HHHHHHHHSCSTTCCHHHHHHH----TTSCHHHHHHHC
T ss_pred HHHHHHHHcCccccCHHHHHHH----hCCCHHHHHHHC
Confidence 4556776666 679999998 999999999884
No 430
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=23.26 E-value=86 Score=29.04 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcch
Q 044490 18 GKDHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQG 56 (430)
Q Consensus 18 Gk~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg 56 (430)
.+.++..+.+.++..|+.+|||... . +.+.|++.+
T Consensus 130 ~k~l~~~eae~lL~~lv~~gWl~~~-~---g~~~l~~R~ 164 (238)
T 3nw0_A 130 GKKMRKKEAEQVLQKFVQNKWLIEK-E---GEFTLHGRA 164 (238)
T ss_dssp SSCCCHHHHHHHHHHHHHTTSEEEE-T---TEEEECHHH
T ss_pred cCCCCHHHHHHHHHHHHHhcchhhh-C---CEEEecCcc
Confidence 4789999999999999999999875 3 568899865
No 431
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=23.22 E-value=28 Score=30.04 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=25.1
Q ss_pred HHHHHHHhc---CCCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHED---GLSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~---G~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.++ |.|+.+||.. -|++.+|||.|.
T Consensus 20 aA~~lf~~~G~~~~s~~~IA~~----aGvsk~tlY~hF 53 (200)
T 2hyj_A 20 RAAEIASEEGLDGITIGRLAEE----LEMSKSGVHKHF 53 (200)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HTCCHHHHHTTC
T ss_pred HHHHHHHHcCcccCCHHHHHHH----hCCChHHHHHHc
Confidence 456677665 5789999998 999999999774
No 432
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=23.21 E-value=84 Score=25.48 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeecCccceEEeCcchH
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETIKDVYRTVSVSQQGK 57 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~~~~y~~l~LT~kg~ 57 (430)
+.++..+.+++..|...|||... .+..+.+.|+....
T Consensus 37 ~i~~~~v~~il~~L~~~Glv~~~-~g~~ggy~L~~~~~ 73 (129)
T 2y75_A 37 NLSEHYLEQLVSPLRNAGLVKSI-RGAYGGYVLGSEPD 73 (129)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEC-----CCEEESSCGG
T ss_pred CcCHHHHHHHHHHHHHCCceEec-CCCCCceEeCCCHH
Confidence 57999999999999999999865 33334566665443
No 433
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=23.13 E-value=49 Score=25.29 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=28.8
Q ss_pred cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 226 ~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
...++.|||+. -++++.||..-|..+.+.|.
T Consensus 15 g~vsv~eLa~~----l~VS~~TIRrdL~~Le~~G~ 45 (78)
T 1xn7_A 15 GRMEAAQISQT----LNTPQPMINAMLQQLESMGK 45 (78)
T ss_dssp CSBCHHHHHHH----TTCCHHHHHHHHHHHHHHTS
T ss_pred CCCcHHHHHHH----HCcCHHHHHHHHHHHHHCCC
Confidence 56899999999 99999999999999999995
No 434
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=23.08 E-value=98 Score=26.80 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=37.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCceeee-cC-----c--cceEEeCcchHhhhcC
Q 044490 16 GLGKDHSSNWWKTLAYQLISYGYLTETI-KD-----V--YRTVSVSQQGKQYLGS 62 (430)
Q Consensus 16 G~Gk~ls~~~wk~li~qLi~~GyL~e~~-~~-----~--y~~l~LT~kg~~~L~g 62 (430)
..+..+|..-+-+-++.|+..|+|.... .+ + ...+.||++|+..|..
T Consensus 53 ~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~~ 107 (151)
T 3u1d_A 53 YRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLRA 107 (151)
T ss_dssp HHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHHH
Confidence 3445599999999999999999999651 11 1 1269999999999975
No 435
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=23.01 E-value=1.4e+02 Score=25.00 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=30.5
Q ss_pred cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcch
Q 044490 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINW 264 (430)
Q Consensus 226 ~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~ 264 (430)
.+-|+++||+. -+++.++|..-|..++..|. +.+
T Consensus 50 ~~ps~~~LA~~----~~~s~~~v~~~L~~L~~KGl-I~i 83 (135)
T 2v79_A 50 YFPTPNQLQEG----MSISVEECTNRLRMFIQKGF-LFI 83 (135)
T ss_dssp CSCCHHHHHTT----SSSCHHHHHHHHHHHHHHTS-CEE
T ss_pred CCCCHHHHHHH----HCcCHHHHHHHHHHHHHCCC-EEE
Confidence 45799999998 99999999999999999995 665
No 436
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=22.84 E-value=73 Score=26.25 Aligned_cols=105 Identities=6% Similarity=-0.006 Sum_probs=58.2
Q ss_pred CCCchHHHHHHHH-H-hcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcch----hhhhhccCCCHHHH--HHHH
Q 044490 211 KLTPAKYEAWKMW-H-EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINW----TRLCDEVGLTDEIF--SAIQ 282 (430)
Q Consensus 211 ~l~~t~~~T~~l~-~-~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~~----~~~i~~~~l~~e~~--~~I~ 282 (430)
.+++.....+..+ . ..+.|..+||+.-...++++.+||...|..+...|. +.- ..++-..-++++.. ..+.
T Consensus 6 ~lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGl-v~r~~~~r~~~~~~~lt~~~~~~~~~~ 84 (138)
T 2g9w_A 6 RLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNL-VLQIRDDRAHRYAPVHGRDELVAGLMV 84 (138)
T ss_dssp GCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTS-EEEEC---CCEEEESSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCC-EEEEecCCeEEEEeCCCHHHHHHHHHH
Confidence 3555555555544 3 268999999987222235899999999999999996 431 11110112465443 3333
Q ss_pred HHHHH--hCCCCChHHHHHhCCCCCCHHHHHHHHHHHH
Q 044490 283 EAISK--VGCKDKLKPIKNELPDDITYAHIKACLVMEN 318 (430)
Q Consensus 283 ~a~~~--~g~~~~LkpIke~l~~~isY~~Irl~la~~~ 318 (430)
..+.+ ++ .....+...+-..+|-.++......++
T Consensus 85 ~~~~~~~~~--~~~~~~~~~~~~~ls~eE~~~L~~lL~ 120 (138)
T 2g9w_A 85 DALAQAEDS--GSRQAALVHFVERVGADEADALRRALA 120 (138)
T ss_dssp HHHTTSSSH--HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33332 10 112333333334577788776665544
No 437
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=22.70 E-value=36 Score=28.39 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=28.4
Q ss_pred CCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 227 GLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 227 G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+.++.+||+. -+++.+||...+..+...|+
T Consensus 51 ~~t~~eLa~~----l~~~~~tvs~~v~~Le~~Gl 80 (147)
T 4b8x_A 51 ELPMSKIGER----LMVHPTSVTNTVDRLVRSGL 80 (147)
T ss_dssp EEEHHHHHHH----HTCCHHHHHHHHHHHHHTTS
T ss_pred CcCHHHHHHH----HCCCHHHHHHHHHHHHhCCC
Confidence 5899999998 99999999999999999996
No 438
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=22.58 E-value=87 Score=26.41 Aligned_cols=44 Identities=14% Similarity=-0.087 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHcCCceeee-cC---c--cceEEeCcchHhhhcCC
Q 044490 20 DHSSNWWKTLAYQLISYGYLTETI-KD---V--YRTVSVSQQGKQYLGSA 63 (430)
Q Consensus 20 ~ls~~~wk~li~qLi~~GyL~e~~-~~---~--y~~l~LT~kg~~~L~g~ 63 (430)
.++...+-..++.|..+|||.... .. + -..+.||++|++.|...
T Consensus 65 ~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~ 114 (138)
T 2e1n_A 65 RLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDL 114 (138)
T ss_dssp ECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHH
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHHHH
Confidence 478999999999999999998752 11 1 12689999999998754
No 439
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=22.53 E-value=14 Score=31.11 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=19.9
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.++|.+.| .|+.+||+. -|++.+|||.|.
T Consensus 20 aA~~lf~~~G~~~~t~~~IA~~----agvs~~t~Y~~F 53 (199)
T 3on2_A 20 RAESTLEKDGVDGLSLRQLARE----AGVSHAAPSKHF 53 (199)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----TC-----CCCSS
T ss_pred HHHHHHHhcChhhhhHHHHHHH----hCCChHHHHHHh
Confidence 4566776665 799999998 999999988663
No 440
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.37 E-value=37 Score=29.92 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=25.4
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
....+|.++| .|+.+||+. -|++.+|+|.|..
T Consensus 24 aA~~l~~~~G~~~~s~~~IA~~----agvs~~t~Y~~F~ 58 (216)
T 2oi8_A 24 HAWEQIATAGASALSLNAIAKR----MGMSGPALYRYFD 58 (216)
T ss_dssp HHHHHHHHHCTTSCCHHHHHHH----TTCCHHHHHTTCS
T ss_pred HHHHHHHhcCcccCCHHHHHHH----hCCCHHHHHHHcC
Confidence 3455676554 799999999 9999999988753
No 441
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=22.24 E-value=51 Score=27.82 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=29.2
Q ss_pred cCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 226 DGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 226 ~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
.+.++.|||+. -+++.+|+..||..+...|.
T Consensus 36 g~~~~~eLa~~----lgis~~tls~~L~~Le~~Gl 66 (146)
T 2f2e_A 36 GLTRFGEFQKS----LGLAKNILAARLRNLVEHGV 66 (146)
T ss_dssp TCCSHHHHHHH----HCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHH----hCCCHHHHHHHHHHHHHCCC
Confidence 67999999998 89999999999999999996
No 442
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.22 E-value=63 Score=27.41 Aligned_cols=47 Identities=17% Similarity=0.077 Sum_probs=31.1
Q ss_pred chHHHHHHHHHh--cCCCHHHHhcCCCC-CCCCChhhHHHHHHHHHHcCC
Q 044490 214 PAKYEAWKMWHE--DGLSIQKIANYPGR-SAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 214 ~t~~~T~~l~~~--~G~si~eIA~~~~r-~R~L~~sTI~~HL~~~i~~G~ 260 (430)
+.....++.+.+ .-+|.+||.+.-+. .-+++.+|||..|..+...|.
T Consensus 27 ~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 27 KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 334445555542 24677777664100 026899999999999999995
No 443
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.21 E-value=2.1e+02 Score=24.41 Aligned_cols=66 Identities=14% Similarity=0.039 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCcccccccccceecccccCCCchHHHHHHHHHh--cCCCHHHHhcCCCC---CCCCCh
Q 044490 171 DHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLTPAKYEAWKMWHE--DGLSIQKIANYPGR---SAPIKE 245 (430)
Q Consensus 171 ~~fL~~I~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~T~~l~~~--~G~si~eIA~~~~r---~R~L~~ 245 (430)
...++.+.++++++++.. |+.....++.+.+ .-+|.+||.+.-+. ..+++.
T Consensus 14 ~~~~~~~~~~L~~~g~r~------------------------T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~ 69 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKY------------------------TKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGI 69 (162)
T ss_dssp HHHHHHHHHHHHHHTCCC------------------------CHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCH
T ss_pred HHHHHHHHHHHHHcCCCC------------------------CHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCH
Confidence 445566677777777443 2233334444432 23556655442111 135889
Q ss_pred hhHHHHHHHHHHcCC
Q 044490 246 QTVVDYLLEAVSEGF 260 (430)
Q Consensus 246 sTI~~HL~~~i~~G~ 260 (430)
+|||..|..+...|.
T Consensus 70 aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 70 ATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCC
Confidence 999999999999995
No 444
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=22.20 E-value=39 Score=30.66 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=26.2
Q ss_pred HHHHHHHhcC---CCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 218 EAWKMWHEDG---LSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 218 ~T~~l~~~~G---~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
....+|.++| .|+.+||+. -+++.+|+|.|.
T Consensus 14 AA~~l~~~~G~~~~S~r~IA~~----aGvs~~tlY~hF 47 (234)
T 2opt_A 14 TALGILDAEGLDALSMRRLAQE----LKTGHASLYAHV 47 (234)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH----HTCCHHHHHHHH
T ss_pred HHHHHHHhCCccccCHHHHHHH----HCCChhHHHHHc
Confidence 4566777666 799999998 999999999984
No 445
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=22.06 E-value=63 Score=24.92 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=18.7
Q ss_pred CCCHHHHhccCCCCHHHHHHHHH
Q 044490 149 PSTKARLANIDGVNQHLVITHGD 171 (430)
Q Consensus 149 P~T~~eL~~I~Gvg~~k~~kyG~ 171 (430)
-.+.++|.+|+|||+.++++.-.
T Consensus 60 ~as~~eL~~i~GIG~~~a~~I~~ 82 (91)
T 2a1j_B 60 AASREDLALCPGLGPQKARRLFD 82 (91)
T ss_dssp SCCHHHHHTSSSCCSHHHHHHHH
T ss_pred hCCHHHHHhCCCCCHHHHHHHHH
Confidence 45789999999999998776533
No 446
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=21.90 E-value=63 Score=25.42 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=29.0
Q ss_pred hcCCCHHHHhcCCCCCC-CCChhhHHHHHHHHHHcCC
Q 044490 225 EDGLSIQKIANYPGRSA-PIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 225 ~~G~si~eIA~~~~r~R-~L~~sTI~~HL~~~i~~G~ 260 (430)
+.++++.+||+. - +++.+|+..||..+...|.
T Consensus 36 ~~~~~~~eL~~~----l~gis~~~ls~~L~~Le~~Gl 68 (107)
T 2fsw_A 36 RRIIRYGELKRA----IPGISEKMLIDELKFLCGKGL 68 (107)
T ss_dssp TSCEEHHHHHHH----STTCCHHHHHHHHHHHHHTTS
T ss_pred hCCcCHHHHHHH----cccCCHHHHHHHHHHHHHCCC
Confidence 367999999987 7 5999999999999999996
No 447
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=21.85 E-value=84 Score=28.98 Aligned_cols=107 Identities=16% Similarity=0.154 Sum_probs=61.3
Q ss_pred HHHhCCCCHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHh-hccCCCC----Cc-Ccccccc-ccccee-cccccCCCch
Q 044490 144 IALARPSTKARLANIDGVNQHLVITHGDHLLQTIRHLSQK-LNLSLDG----KV-GEHTAFT-RKLHVV-VNTRTKLTPA 215 (430)
Q Consensus 144 mA~~~P~T~~eL~~I~Gvg~~k~~kyG~~fL~~I~~~~~e-~~~~~~~----~~-~~~~~~~-~~~~~~-~~~~~~l~~t 215 (430)
++.-.|.|..+|+++-|++...++. .+-++...|... .++..-. +. ...+... .-..+. ......++..
T Consensus 25 f~a~epvs~~~La~~l~~~~~~v~~---~l~~L~~~y~~~~rGiel~~v~~gy~l~T~~e~~~~v~~~~~~~~~~~Ls~a 101 (219)
T 2z99_A 25 LVIDTPVTADALAAATEQPVYRVAA---KLQLMADELTGRDSGIDLRHTSEGWRMYTRARFAPYVEKLLLDGARTKLTRA 101 (219)
T ss_dssp HHCSSCBCHHHHHHHHTSCHHHHHH---HHHHHHHHHHHTTCSEEEEEETTEEEEEECGGGHHHHHHHHHHHHSCCCCHH
T ss_pred HHcCCCCCHHHHHHHHCcCHHHHHH---HHHHHHHHHhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhcccccCccCHH
Confidence 4567899999999998888775543 233333444321 1221110 00 0010000 000010 1123457788
Q ss_pred HHHHHHHH-HhcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 216 KYEAWKMW-HEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 216 ~~~T~~l~-~~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
..+|+... .++..|-.+|+++ ||++. .+++..++..|.
T Consensus 102 aLEtLaiIAy~QPITR~eI~~i----rGv~~---~~~v~~Lle~gL 140 (219)
T 2z99_A 102 ALETLAVVAYRQPVTRARVSAV----RGVNV---DAVMRTLLARGL 140 (219)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHH----HTSCC---HHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCcCHHHHHHH----HCCCH---HHHHHHHHHCCC
Confidence 87787765 2388999999999 99986 467888888884
No 448
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=21.71 E-value=29 Score=30.16 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=22.0
Q ss_pred HHHHHHhc---CCCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 219 AWKMWHED---GLSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 219 T~~l~~~~---G~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
+..+|.++ +.|+.+||+. -|++.+|||.|.
T Consensus 33 A~~lf~e~G~~~~s~~~IA~~----aGvskgtlY~yF 65 (214)
T 2oer_A 33 AVQVLASEGAQRFTTARVAER----AGVSIGSLYQYF 65 (214)
T ss_dssp HHHC------CCCCHHHHHHH----HTCCHHHHHHHC
T ss_pred HHHHHHhhCcccccHHHHHHH----hCCCCchHHHhC
Confidence 44556554 5699999998 999999999885
No 449
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=21.57 E-value=69 Score=26.63 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=30.8
Q ss_pred hcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCCCcc
Q 044490 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDIN 263 (430)
Q Consensus 225 ~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~~l~ 263 (430)
..+.++.+||+. -+++.+||..+|..+...|. +.
T Consensus 52 ~~~~~~~~la~~----l~vs~~tvs~~l~~Le~~Gl-v~ 85 (155)
T 2h09_A 52 VGEARQVDMAAR----LGVSQPTVAKMLKRLATMGL-IE 85 (155)
T ss_dssp HSCCCHHHHHHH----HTSCHHHHHHHHHHHHHTTC-EE
T ss_pred CCCcCHHHHHHH----hCcCHHHHHHHHHHHHHCCC-EE
Confidence 368999999999 99999999999999999996 54
No 450
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=21.56 E-value=80 Score=25.93 Aligned_cols=33 Identities=9% Similarity=-0.064 Sum_probs=27.8
Q ss_pred ccccCcccCCCCCCHHHHHHHHHHHHHcCCcee
Q 044490 9 FDKLLLHGLGKDHSSNWWKTLAYQLISYGYLTE 41 (430)
Q Consensus 9 ~d~l~~fG~Gk~ls~~~wk~li~qLi~~GyL~e 41 (430)
..+.-+|.-+.+||.+++..-|++|+.+||.--
T Consensus 8 ~~~~etfSyLP~lt~eqI~kQI~Yll~qGw~p~ 40 (109)
T 1rbl_M 8 ERRFETFSYLPPLSDRQIAAQIEYMIEQGFHPL 40 (109)
T ss_dssp CCCCSTTTTSSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 345667777888999999999999999999753
No 451
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=21.31 E-value=64 Score=24.08 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=22.8
Q ss_pred HHHHHHHHhCCCCHHHHhccCCCCHHHHHHH
Q 044490 139 QTIKKIALARPSTKARLANIDGVNQHLVITH 169 (430)
Q Consensus 139 ~tL~emA~~~P~T~~eL~~I~Gvg~~k~~ky 169 (430)
.|+..+|.. +..+|..|.|+++.++++.
T Consensus 29 ~TvedlA~~---~~~eL~~i~gise~kA~~i 56 (70)
T 1wcn_A 29 CTLEDLAEQ---GIDDLADIEGLTDEKAGAL 56 (70)
T ss_dssp CSHHHHHTS---CHHHHHTSSSCCHHHHHHH
T ss_pred CcHHHHHcC---CHHHHHHccCCCHHHHHHH
Confidence 467777765 8899999999999988763
No 452
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=20.87 E-value=1.3e+02 Score=27.43 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.8
Q ss_pred hcCCCHHHHhcCCCCCCCCChhhHHHHHH
Q 044490 225 EDGLSIQKIANYPGRSAPIKEQTVVDYLL 253 (430)
Q Consensus 225 ~~G~si~eIA~~~~r~R~L~~sTI~~HL~ 253 (430)
+.|+|.++||.. -|++.+||..++.
T Consensus 132 ~~g~t~~~iA~~----lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 132 EMGLTQEEVARR----VGKARSTVANALR 156 (230)
T ss_dssp HTTCCHHHHHHH----HTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHH----HCcCHHHHHHHHH
Confidence 489999999998 9999999987653
No 453
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=20.86 E-value=31 Score=29.81 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.4
Q ss_pred cCCCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 226 DGLSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 226 ~G~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.|+.+||+. -|++.+|+|.|.
T Consensus 39 ~~~tv~~Ia~~----Agvs~~t~Y~~F 61 (185)
T 3o60_A 39 ESISIKDLCEQ----ARVSRATFYRHH 61 (185)
T ss_dssp TTCCHHHHHHH----HTCCHHHHHHHC
T ss_pred ccCCHHHHHHH----hCCCHHHHHHHc
Confidence 35799999998 999999999885
No 454
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=20.46 E-value=1.1e+02 Score=23.80 Aligned_cols=48 Identities=6% Similarity=0.059 Sum_probs=40.0
Q ss_pred ccCCCchHHHHHHHHH---hcCCCHHHHhcCCCCCCCCChhhHHHHHHHHHHcCC
Q 044490 209 RTKLTPAKYEAWKMWH---EDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGF 260 (430)
Q Consensus 209 ~~~l~~t~~~T~~l~~---~~G~si~eIA~~~~r~R~L~~sTI~~HL~~~i~~G~ 260 (430)
...+++.....|..+. ++|.+..+||.. -++..+||-.-|-.+...|.
T Consensus 15 ~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~----~~l~~~tvt~iLk~LE~kgl 65 (91)
T 2dk5_A 15 MKGSDNQEKLVYQIIEDAGNKGIWSRDVRYK----SNLPLTEINKILKNLESKKL 65 (91)
T ss_dssp CCCSCSSHHHHHHHHHHHCTTCEEHHHHHHH----TTCCHHHHHHHHHHHHHTTS
T ss_pred hcCCCHHHHHHHHHHHHcCCCCcCHHHHHHH----HCCCHHHHHHHHHHHHHCCC
Confidence 4467777777777665 348999999999 99999999999999999885
No 455
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=20.25 E-value=1.4e+02 Score=23.82 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=46.7
Q ss_pred CCCchHHHHHHHH-HhcCCCHHHHhc-CCCCCCCCChhhHHHHHHHHHHcCCCcc--hhhhhhccCCCHHHHHHHHHHHH
Q 044490 211 KLTPAKYEAWKMW-HEDGLSIQKIAN-YPGRSAPIKEQTVVDYLLEAVSEGFDIN--WTRLCDEVGLTDEIFSAIQEAIS 286 (430)
Q Consensus 211 ~l~~t~~~T~~l~-~~~G~si~eIA~-~~~r~R~L~~sTI~~HL~~~i~~G~~l~--~~~~i~~~~l~~e~~~~I~~a~~ 286 (430)
.++.+..-.+..+ ++...|+.+||+ . +++..+|+..-+..+++.|. +. -++ +-+|++=...|..+..
T Consensus 13 ~L~~~QfsiL~~L~~~~~~t~~~Lae~~----l~~drstvsrnl~~L~r~Gl-Ve~~~~D----l~LT~~G~~~l~~a~~ 83 (95)
T 1bja_A 13 VLNEKTATILITIAKKDFITAAEVREVH----PDLGNAVVNSNIGVLIKKGL-VEKSGDG----LIITGEAQDIISNAAT 83 (95)
T ss_dssp SSCHHHHHHHHHHHHSTTBCHHHHHHTC----TTSCHHHHHHHHHHHHTTTS-EEEETTE----EEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHH----hcccHHHHHHHHHHHHHCCC-eecCCCC----eeeCHhHHHHHHHHHH
Confidence 4555555444444 435889999999 8 99999999999999999996 43 122 3357766666655544
No 456
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=20.17 E-value=27 Score=29.76 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=19.3
Q ss_pred cCCCHHHHhcCCCCCCCCChhhHHHHH
Q 044490 226 DGLSIQKIANYPGRSAPIKEQTVVDYL 252 (430)
Q Consensus 226 ~G~si~eIA~~~~r~R~L~~sTI~~HL 252 (430)
.+.|+.+||+. -|++.+|++.|.
T Consensus 44 ~~~t~~~Ia~~----agvs~~t~Y~~F 66 (212)
T 3nxc_A 44 QRITTAKLAAS----VGVSEAALYRHF 66 (212)
T ss_dssp --CCHHHHHHH----TTSCHHHHHTTC
T ss_pred hhcCHHHHHHH----hCCChhHHHHHC
Confidence 35899999999 999999999773
Done!