BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044491
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 29/152 (19%)
Query: 32 SFLPIKCALATCILSSRWKFVWTLLPNLCFDERLHMRPVYGQHMGYIFRKDGFCFSEDPN 91
S + +L T LSS F +LPNLC + + ++ +Y Q+ G+ +
Sbjct: 359 SLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP--------- 408
Query: 92 PVFENFVTRV-LHLTNPTAIGKFSLDRWALSDLTRFRSWVDSIIMRNVCEIELFLGSHKL 150
P N V LHL+ G +LS L + W+ N+ E E
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL------NMLEGE-------- 454
Query: 151 VRLPESICTLKTLEVLKL-YSDFVIKIPPSGL 181
+P+ + +KTLE L L ++D +I PSGL
Sbjct: 455 --IPQELMYVKTLETLILDFNDLTGEI-PSGL 483
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 29/152 (19%)
Query: 32 SFLPIKCALATCILSSRWKFVWTLLPNLCFDERLHMRPVYGQHMGYIFRKDGFCFSEDPN 91
S + +L T LSS F +LPNLC + + ++ +Y Q+ G+ +
Sbjct: 362 SLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP--------- 411
Query: 92 PVFENFVTRV-LHLTNPTAIGKFSLDRWALSDLTRFRSWVDSIIMRNVCEIELFLGSHKL 150
P N V LHL+ G +LS L + W+ N+ E E
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL------NMLEGE-------- 457
Query: 151 VRLPESICTLKTLEVLKL-YSDFVIKIPPSGL 181
+P+ + +KTLE L L ++D +I PSGL
Sbjct: 458 --IPQELMYVKTLETLILDFNDLTGEI-PSGL 486
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 92 PVFENFVTRVLHLTNPTAIGKFSLDRWALSDLTR 125
P++E+ V LH N IGK ++D +A+ T
Sbjct: 101 PIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTE 134
>pdb|1VJT|A Chain A, Crystal Structure Of Alpha-Glucosidase (Tm0752) From
Thermotoga Maritima At 2.50 A Resolution
Length = 483
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 409 KDELGLVKYLLKNCKVLNKVIIRCKETASKENLCQKLDKL 448
+ E L Y+ ++ KVL +++IR T S E + Q LD++
Sbjct: 427 RXEWNLEAYISRDRKVLEEILIRDPRTKSYEQIVQVLDEI 466
>pdb|1OVB|A Chain A, The Mechanism Of Iron Uptake By Transferrins: The
Structure Of An 18kd Nii-Domain Fragment At 2.3
Angstroms Resolution
Length = 159
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 373 KLSCH---FEEFGWIEQPNIPLCLLLHVKKIEIKKFEGQKDELGLVKYLLKNC----KVL 425
K SCH GW NIP+ L+H + IE + E E + K+ +C +
Sbjct: 22 KTSCHTGLGRSAGW----NIPIGTLIHREDIEWEGIESGSVEQAVAKFFSASCVPGATIE 77
Query: 426 NKVIIRCKETA 436
K+ +CK A
Sbjct: 78 QKLCRQCKGDA 88
>pdb|1C8U|A Chain A, Crystal Structure Of The E.Coli Thioesterase Ii, A
Homologue Of The Human Nef-Binding Enzyme
pdb|1C8U|B Chain B, Crystal Structure Of The E.Coli Thioesterase Ii, A
Homologue Of The Human Nef-Binding Enzyme
Length = 285
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 398 KKIEIKKFEGQKDELGLVKYLLKNCKVLNKVIIRCKETASKENLCQKL 445
+KIE F GQ ++LGL + +V+ + + KET +E L
Sbjct: 14 EKIEEGLFRGQSEDLGLRQVF--GGQVVGQALYAAKETVPEERLVHSF 59
>pdb|1AOV|A Chain A, Apo Duck Ovotransferrin
pdb|1DOT|A Chain A, Crystallographic Structure Of Duck Ovotransferrin At 2.3
Angstroms Resolution
Length = 686
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 373 KLSCH---FEEFGWIEQPNIPLCLLLHVKKIEIKKFEGQKDELGLVKYLLKNC----KVL 425
K SCH GW NIP+ L+H + IE + E E + K+ +C +
Sbjct: 112 KTSCHTGLGRSAGW----NIPIGTLIHREDIEWEGIESGISEQAVAKFFSASCVPGATIE 167
Query: 426 NKVIIRCKETA 436
K+ +CK A
Sbjct: 168 QKLCRQCKGDA 178
>pdb|3TLJ|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TLJ|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TM4|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM4|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM5|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
pdb|3TM5|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
Length = 373
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 372 KKLSCHFEEFGWIEQP-NIPLCLLLHVKKIEIKKFEGQKDELGLVKYLLKNCKVLNKVII 430
KKL F+ E+P I LLL +K +G+K EL + YL +N ++L++VII
Sbjct: 24 KKLGISFQ---IEEKPLGIEGRLLLEAEKAYYVDEKGRKRELSISTYLNENSRLLHRVII 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,549,923
Number of Sequences: 62578
Number of extensions: 554055
Number of successful extensions: 1238
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1234
Number of HSP's gapped (non-prelim): 10
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)