Query 044491
Match_columns 460
No_of_seqs 170 out of 2235
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 03:44:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.7 1.2E-18 2.7E-23 154.1 -3.4 272 19-373 98-373 (419)
2 KOG4341 F-box protein containi 99.6 3E-18 6.6E-23 158.4 -7.8 346 21-432 74-435 (483)
3 smart00579 FBD domain in FBox 99.4 3.3E-12 7.2E-17 93.0 8.3 70 391-460 1-72 (72)
4 PF08387 FBD: FBD; InterPro: 99.1 1.2E-10 2.6E-15 77.8 5.2 50 382-431 1-50 (51)
5 PLN00113 leucine-rich repeat r 98.8 4E-09 8.7E-14 116.5 6.3 81 136-220 93-175 (968)
6 PLN00113 leucine-rich repeat r 98.8 5.7E-09 1.2E-13 115.2 5.3 80 136-220 118-199 (968)
7 PF12937 F-box-like: F-box-lik 98.8 3E-09 6.5E-14 70.1 1.8 36 19-54 1-36 (47)
8 PLN03210 Resistant to P. syrin 98.6 5.9E-08 1.3E-12 108.1 6.5 124 137-270 590-715 (1153)
9 PLN03210 Resistant to P. syrin 98.5 1.3E-07 2.8E-12 105.4 4.7 80 136-220 634-715 (1153)
10 PF00646 F-box: F-box domain; 98.3 1.5E-07 3.2E-12 62.4 -0.1 38 19-56 3-40 (48)
11 cd00116 LRR_RI Leucine-rich re 98.2 1.4E-07 3E-12 90.4 -1.2 35 137-171 24-61 (319)
12 KOG4194 Membrane glycoprotein 98.2 1E-06 2.2E-11 86.1 4.4 109 306-424 360-470 (873)
13 KOG1909 Ran GTPase-activating 98.2 5E-07 1.1E-11 83.0 1.3 252 110-405 32-308 (382)
14 smart00256 FBOX A Receptor for 98.1 8.3E-07 1.8E-11 56.5 1.2 34 22-55 1-34 (41)
15 KOG4341 F-box protein containi 98.0 5.4E-08 1.2E-12 91.2 -8.1 235 158-405 134-382 (483)
16 cd00116 LRR_RI Leucine-rich re 98.0 6E-07 1.3E-11 86.0 -2.9 84 137-221 52-149 (319)
17 KOG3207 Beta-tubulin folding c 97.9 6.4E-07 1.4E-11 84.6 -2.9 109 158-269 169-281 (505)
18 KOG4194 Membrane glycoprotein 97.9 2.9E-06 6.3E-11 83.1 1.0 83 158-243 99-184 (873)
19 KOG3207 Beta-tubulin folding c 97.8 9.6E-07 2.1E-11 83.4 -4.4 206 159-373 119-336 (505)
20 PRK15387 E3 ubiquitin-protein 97.6 0.00017 3.6E-09 75.9 7.8 113 136-271 201-314 (788)
21 KOG0618 Serine/threonine phosp 97.6 2.2E-06 4.8E-11 88.2 -6.1 69 125-197 255-324 (1081)
22 KOG2120 SCF ubiquitin ligase, 97.6 3.4E-06 7.3E-11 76.0 -4.3 184 185-407 186-375 (419)
23 KOG0444 Cytoskeletal regulator 97.6 2.8E-07 6E-12 90.7 -12.2 204 150-372 92-300 (1255)
24 KOG0444 Cytoskeletal regulator 97.4 1.5E-06 3.3E-11 85.6 -9.0 41 151-191 45-85 (1255)
25 PRK15387 E3 ubiquitin-protein 97.4 0.00049 1.1E-08 72.5 7.8 90 136-242 222-312 (788)
26 KOG2982 Uncharacterized conser 97.3 4.3E-05 9.4E-10 69.0 -0.2 240 163-420 47-307 (418)
27 KOG1947 Leucine rich repeat pr 97.3 6.4E-06 1.4E-10 83.7 -6.4 133 136-269 188-331 (482)
28 PF14580 LRR_9: Leucine-rich r 97.3 9.5E-05 2.1E-09 63.4 1.5 64 308-373 85-150 (175)
29 PRK15370 E3 ubiquitin-protein 97.3 0.0002 4.4E-09 75.5 4.2 198 136-373 178-377 (754)
30 KOG1909 Ran GTPase-activating 97.3 1.9E-05 4.1E-10 72.8 -3.4 259 159-435 28-310 (382)
31 PF14580 LRR_9: Leucine-rich r 97.3 1.4E-05 3.1E-10 68.4 -4.1 82 137-224 20-103 (175)
32 PF07723 LRR_2: Leucine Rich R 97.0 0.00074 1.6E-08 37.7 2.9 25 185-209 1-26 (26)
33 KOG3665 ZYG-1-like serine/thre 96.9 0.00082 1.8E-08 70.3 3.8 156 161-373 122-285 (699)
34 KOG0617 Ras suppressor protein 96.8 2.6E-05 5.6E-10 64.8 -6.0 38 336-373 145-183 (264)
35 PRK15370 E3 ubiquitin-protein 96.8 0.00049 1.1E-08 72.7 1.6 54 136-195 199-253 (754)
36 KOG1947 Leucine rich repeat pr 96.7 0.00028 6.1E-09 71.6 -1.0 39 17-55 43-81 (482)
37 PF13855 LRR_8: Leucine rich r 96.6 0.0011 2.5E-08 46.0 1.8 58 161-220 1-60 (61)
38 KOG0617 Ras suppressor protein 96.2 0.00011 2.4E-09 61.1 -6.1 42 150-191 68-109 (264)
39 KOG0618 Serine/threonine phosp 96.1 7.9E-05 1.7E-09 77.1 -8.9 37 336-373 450-486 (1081)
40 KOG3665 ZYG-1-like serine/thre 96.0 0.0021 4.5E-08 67.4 0.5 118 303-431 165-283 (699)
41 KOG2982 Uncharacterized conser 96.0 0.0011 2.4E-08 60.2 -1.4 160 183-373 44-209 (418)
42 COG5238 RNA1 Ran GTPase-activa 95.7 0.0065 1.4E-07 54.7 2.4 216 119-373 39-282 (388)
43 KOG1259 Nischarin, modulator o 95.7 0.0015 3.3E-08 59.4 -1.6 202 151-373 172-409 (490)
44 KOG2123 Uncharacterized conser 95.6 0.00065 1.4E-08 61.1 -4.4 99 262-371 22-125 (388)
45 KOG1259 Nischarin, modulator o 95.4 0.0073 1.6E-07 55.1 1.6 174 182-373 180-384 (490)
46 KOG0281 Beta-TrCP (transducin 95.2 0.006 1.3E-07 56.2 0.4 38 15-52 71-112 (499)
47 KOG2739 Leucine-rich acidic nu 95.1 0.0018 4E-08 57.8 -3.0 111 159-270 41-154 (260)
48 KOG4658 Apoptotic ATPase [Sign 95.0 0.018 3.8E-07 62.2 3.3 82 136-220 571-653 (889)
49 KOG2997 F-box protein FBX9 [Ge 94.3 0.017 3.8E-07 52.9 0.9 38 15-52 103-145 (366)
50 PLN03150 hypothetical protein; 94.2 0.029 6.3E-07 58.8 2.5 79 163-243 420-501 (623)
51 PF13855 LRR_8: Leucine rich r 94.2 0.063 1.4E-06 37.1 3.5 55 137-193 2-59 (61)
52 KOG4658 Apoptotic ATPase [Sign 94.2 0.059 1.3E-06 58.3 4.9 80 161-242 523-605 (889)
53 PF12799 LRR_4: Leucine Rich r 94.1 0.014 3.1E-07 37.3 -0.0 30 162-191 2-31 (44)
54 PRK15386 type III secretion pr 93.8 0.066 1.4E-06 52.1 3.8 135 205-373 48-187 (426)
55 KOG0472 Leucine-rich repeat pr 93.2 0.0003 6.5E-09 66.3 -12.6 159 150-323 103-264 (565)
56 PF12799 LRR_4: Leucine Rich r 93.0 0.038 8.3E-07 35.3 0.7 36 184-222 1-37 (44)
57 KOG1644 U2-associated snRNP A' 92.8 0.14 3.1E-06 44.3 4.0 88 159-270 62-151 (233)
58 PLN03215 ascorbic acid mannose 92.7 0.049 1.1E-06 52.3 1.2 37 19-55 4-41 (373)
59 COG4886 Leucine-rich repeat (L 92.5 0.032 6.9E-07 55.1 -0.4 163 160-345 115-284 (394)
60 KOG1644 U2-associated snRNP A' 92.4 0.22 4.9E-06 43.1 4.6 99 161-288 42-148 (233)
61 KOG1859 Leucine-rich repeat pr 90.9 0.23 5.1E-06 51.1 3.7 66 105-173 52-121 (1096)
62 COG4886 Leucine-rich repeat (L 89.6 0.088 1.9E-06 52.0 -0.5 167 137-321 117-287 (394)
63 KOG0274 Cdc4 and related F-box 89.0 0.15 3.2E-06 52.1 0.6 45 8-52 97-141 (537)
64 PLN03150 hypothetical protein; 88.6 0.27 5.9E-06 51.6 2.3 79 186-269 420-500 (623)
65 KOG3864 Uncharacterized conser 87.9 0.067 1.4E-06 46.2 -2.2 41 180-220 121-162 (221)
66 KOG0472 Leucine-rich repeat pr 86.3 0.1 2.2E-06 49.8 -2.1 41 156-196 430-471 (565)
67 PRK15386 type III secretion pr 85.5 1.5 3.2E-05 43.0 5.2 12 232-243 156-167 (426)
68 KOG3864 Uncharacterized conser 82.8 0.3 6.5E-06 42.3 -0.6 38 337-374 124-162 (221)
69 PF13013 F-box-like_2: F-box-l 82.7 0.54 1.2E-05 36.6 0.8 30 18-47 21-50 (109)
70 smart00367 LRR_CC Leucine-rich 81.6 0.58 1.3E-05 25.9 0.4 21 338-358 2-23 (26)
71 PF07723 LRR_2: Leucine Rich R 81.0 2.1 4.5E-05 23.8 2.5 25 339-363 1-26 (26)
72 KOG2123 Uncharacterized conser 78.2 0.17 3.7E-06 46.0 -3.7 81 136-219 41-127 (388)
73 KOG2739 Leucine-rich acidic nu 77.4 0.95 2.1E-05 40.9 0.7 68 152-219 82-153 (260)
74 PF00560 LRR_1: Leucine Rich R 76.1 2.1 4.5E-05 22.6 1.5 17 162-178 1-17 (22)
75 COG5238 RNA1 Ran GTPase-activa 70.0 5.6 0.00012 36.5 3.6 39 335-373 211-252 (388)
76 PF13504 LRR_7: Leucine rich r 67.4 3.6 7.8E-05 20.1 1.1 12 161-172 1-12 (17)
77 KOG0531 Protein phosphatase 1, 64.3 2.5 5.5E-05 42.0 0.4 106 157-270 91-197 (414)
78 KOG0532 Leucine-rich repeat (L 64.1 0.19 4.1E-06 50.3 -7.3 67 151-221 88-155 (722)
79 KOG1859 Leucine-rich repeat pr 63.5 0.26 5.6E-06 50.8 -6.6 43 161-203 84-129 (1096)
80 KOG0531 Protein phosphatase 1, 62.0 3.2 7E-05 41.3 0.7 81 157-242 114-196 (414)
81 KOG4237 Extracellular matrix p 59.8 3.1 6.8E-05 40.1 0.1 61 159-221 272-334 (498)
82 PF13516 LRR_6: Leucine Rich r 52.4 6.6 0.00014 20.9 0.6 13 208-220 1-13 (24)
83 PF09372 PRANC: PRANC domain; 48.3 9.7 0.00021 29.0 1.2 24 17-40 70-93 (97)
84 KOG4237 Extracellular matrix p 40.9 16 0.00034 35.5 1.5 93 258-360 273-372 (498)
85 KOG4408 Putative Mg2+ and Co2+ 38.6 9 0.0002 35.9 -0.4 39 19-57 8-46 (386)
86 KOG3926 F-box proteins [Amino 36.1 9.3 0.0002 34.7 -0.7 50 17-66 200-256 (332)
87 KOG0532 Leucine-rich repeat (L 30.4 7.1 0.00015 39.6 -2.5 78 137-220 144-222 (722)
88 KOG4579 Leucine-rich repeat (L 27.9 11 0.00023 31.0 -1.5 56 163-221 55-112 (177)
89 KOG3445 Mitochondrial/chloropl 25.5 1.1E+02 0.0025 24.7 3.8 38 422-459 20-62 (145)
90 PF13306 LRR_5: Leucine rich r 24.3 26 0.00056 27.8 0.1 56 159-218 10-67 (129)
91 smart00369 LRR_TYP Leucine-ric 20.6 53 0.0011 17.6 0.8 16 161-176 2-17 (26)
92 smart00370 LRR Leucine-rich re 20.6 53 0.0011 17.6 0.8 16 161-176 2-17 (26)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.2e-18 Score=154.14 Aligned_cols=272 Identities=18% Similarity=0.106 Sum_probs=166.8
Q ss_pred cCCCChHHHHHHhcCCcchheeecccchhhhHhhcccCc-ceEeecCCCCccccCCccccccccCCcccCCCCCchHHHH
Q 044491 19 ISQLPDGILCHILSFLPIKCALATCILSSRWKFVWTLLP-NLCFDERLHMRPVYGQHMGYIFRKDGFCFSEDPNPVFENF 97 (460)
Q Consensus 19 is~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (460)
++.|||||+..|||.|+.+++.+++.|||||+++-+.-. ...+|.... .+. ++.
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r---~i~----------------------p~~ 152 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGR---NIH----------------------PDV 152 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCC---ccC----------------------hhH
Confidence 678999999999999999999999999999997643211 122222211 111 122
Q ss_pred HHHhhccCCCCcccEEEEEecCCCCcchhhHHHHHHHhcCceEEEEEeccCcceecCCccccCCcccEEEeceeeeecc-
Q 044491 98 VTRVLHLTNPTAIGKFSLDRWALSDLTRFRSWVDSIIMRNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKI- 176 (460)
Q Consensus 98 v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~- 176 (460)
..+.+. ..|..|++.-... +...++.-... ++..+|++++.....+...+.-.+..|..|+.|+|.|....+.
T Consensus 153 l~~l~~----rgV~v~Rlar~~~-~~prlae~~~~-frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I 226 (419)
T KOG2120|consen 153 LGRLLS----RGVIVFRLARSFM-DQPRLAEHFSP-FRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI 226 (419)
T ss_pred HHHHHh----CCeEEEEcchhhh-cCchhhhhhhh-hhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH
Confidence 222221 1255555553222 22222222221 2346999999776655566666777899999999999965432
Q ss_pred CCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEE
Q 044491 177 PPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVM 255 (460)
Q Consensus 177 ~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~ 255 (460)
....+--.+|+.|+| .+...+..++.-++++|..|.+|+|..|...... +.+ .+.
T Consensus 227 ~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv-----------------------~V~ 282 (419)
T KOG2120|consen 227 VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTV-----------------------AVA 282 (419)
T ss_pred HHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhH-----------------------HHh
Confidence 122334678999999 8888878889999999999999999999743211 100 000
Q ss_pred EecCCceeEEEeeeeeceEEeecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCC
Q 044491 256 IATPNLELLNIHDFCMVSYMFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFP 335 (460)
Q Consensus 256 ~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~ 335 (460)
--.++|..|+++|+.. +|. ...+..+.+.++++.+|+++.+.+-.. .+ .+.+-
T Consensus 283 hise~l~~LNlsG~rr---------nl~----------------~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~-~~~~~ 335 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRR---------NLQ----------------KSHLSTLVRRCPNLVHLDLSDSVMLKN-DC-FQEFF 335 (419)
T ss_pred hhchhhhhhhhhhhHh---------hhh----------------hhHHHHHHHhCCceeeeccccccccCc-hH-HHHHH
Confidence 1123445555554422 000 033555666777777777776432111 11 12255
Q ss_pred CCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 336 KFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 336 ~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
+|+.|++|++ .|.......+.. +++.|.|..|++.||
T Consensus 336 kf~~L~~lSlsRCY~i~p~~~~~-l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDIIPETLLE-LNSKPSLVYLDVFGC 373 (419)
T ss_pred hcchheeeehhhhcCCChHHeee-eccCcceEEEEeccc
Confidence 6777788888 777666555442 566788888888877
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.62 E-value=3e-18 Score=158.35 Aligned_cols=346 Identities=16% Similarity=0.143 Sum_probs=222.3
Q ss_pred CCChHHHHHHhcCCcchheeecccchhhhHhh------cccCcceEeecCCCCccccCCccccccccCCcccCCCCCchH
Q 044491 21 QLPDGILCHILSFLPIKCALATCILSSRWKFV------WTLLPNLCFDERLHMRPVYGQHMGYIFRKDGFCFSEDPNPVF 94 (460)
Q Consensus 21 ~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (460)
.||.|++..|||+|+++.+.+++.+|+-|..+ |..+.-.+|..+. +
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv-------~--------------------- 125 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV-------D--------------------- 125 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC-------C---------------------
Confidence 79999999999999999999999999999875 4333322221111 0
Q ss_pred HHHHHHhhccCCCCcccEEEEEecCCCCcchhhHHHHHHHhcCceEEEEEeccCc-ceecCCccccCCcccEEEeceeee
Q 044491 95 ENFVTRVLHLTNPTAIGKFSLDRWALSDLTRFRSWVDSIIMRNVCEIELFLGSHK-LVRLPESICTLKTLEVLKLYSDFV 173 (460)
Q Consensus 95 ~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~~~~ 173 (460)
.-|-..+..+.|..++.++++.+.......+...... .+++++|.++++... ...+-.....|+.|++|+|..|..
T Consensus 126 -g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~--CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~ 202 (483)
T KOG4341|consen 126 -GGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASN--CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSS 202 (483)
T ss_pred -CcceehHhhhhccccccccccccccCCcchhhHHhhh--CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccch
Confidence 1122223333455689999988765554444443332 468999988666421 222333334689999999998733
Q ss_pred e-cc--CCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEE---EeccccceEEEEeecCcc
Q 044491 174 I-KI--PPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFN---ISSTTLKRLCLSFTNGVA 246 (460)
Q Consensus 174 ~-~~--~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~---i~~~~L~~L~l~~~~~~~ 246 (460)
. +. -..+.+||+|++|++ +|.-....+++.+..+|..|+.+.+++|...+...+. -..+-+..+.+..|.-++
T Consensus 203 iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT 282 (483)
T KOG4341|consen 203 ITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT 282 (483)
T ss_pred hHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc
Confidence 2 11 113447999999999 9988888889999999999999999998754433321 122345555555663222
Q ss_pred ccCCceeEEEecCCceeEEEeeeeeceEEeecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeEEEEeccchhhh
Q 044491 247 YSNNWHKVMIATPNLELLNIHDFCMVSYMFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYAL 326 (460)
Q Consensus 247 ~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~ 326 (460)
..+ ...+.-.+-.|+.|.++++.. .....+..+-+++++|+.|.+..... +
T Consensus 283 D~~-~~~i~~~c~~lq~l~~s~~t~--------------------------~~d~~l~aLg~~~~~L~~l~l~~c~~--f 333 (483)
T KOG4341|consen 283 DED-LWLIACGCHALQVLCYSSCTD--------------------------ITDEVLWALGQHCHNLQVLELSGCQQ--F 333 (483)
T ss_pred chH-HHHHhhhhhHhhhhcccCCCC--------------------------CchHHHHHHhcCCCceEEEeccccch--h
Confidence 211 122333456666666666532 00134566677888899888887432 1
Q ss_pred hhhc-cccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeecccccccCcccccCCCCCcccccceeEEEEEe
Q 044491 327 DKIY-KDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKKLSCHFEEFGWIEQPNIPLCLLLHVKKIEIKK 404 (460)
Q Consensus 327 ~~~~-~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i~~ 404 (460)
.... ......++.|+.|++ .|....+..+..+-.+||.|++|.++.|+...++|. ...+...|...+|..+++.+
T Consensus 334 sd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi---~~l~~~~c~~~~l~~lEL~n 410 (483)
T KOG4341|consen 334 SDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI---RHLSSSSCSLEGLEVLELDN 410 (483)
T ss_pred hhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh---hhhhhccccccccceeeecC
Confidence 1111 112456788999999 777766667999999999999999998855444432 12234557778899999988
Q ss_pred ecCchhHHHHHHHHHhcCcccceEEEEe
Q 044491 405 FEGQKDELGLVKYLLKNCKVLNKVIIRC 432 (460)
Q Consensus 405 ~~~~~~~~~~~~~ll~~a~~Le~l~i~~ 432 (460)
...... ...+ -+..++.||++...-
T Consensus 411 ~p~i~d--~~Le-~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 411 CPLITD--ATLE-HLSICRNLERIELID 435 (483)
T ss_pred CCCchH--HHHH-HHhhCcccceeeeec
Confidence 876642 2333 356778999955544
No 3
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.36 E-value=3.3e-12 Score=93.02 Aligned_cols=70 Identities=34% Similarity=0.610 Sum_probs=63.4
Q ss_pred cccccceeEEEEEeecCchhHHHHHHHHHhcCcccceEEEEeccCCc--HHHHHHHHhhccCCCCCceEEeC
Q 044491 391 LCLLLHVKKIEIKKFEGQKDELGLVKYLLKNCKVLNKVIIRCKETAS--KENLCQKLDKLQRGSMTCEVEIF 460 (460)
Q Consensus 391 ~~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~Le~l~i~~~~~~~--~~~~~~~l~~~~r~s~~~~~~~~ 460 (460)
+|+.++|+.|+|.+|.|...|+++++|+++||+.||+|+|..+.... ..++.++|..++|||+.|+|.+.
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~~~aS~~c~i~~~ 72 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSLPRASSSCQVQFL 72 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhCcCCCCceEEEeC
Confidence 47888999999999999999999999999999999999999987643 45678899999999999999873
No 4
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=99.11 E-value=1.2e-10 Score=77.77 Aligned_cols=50 Identities=48% Similarity=0.869 Sum_probs=45.2
Q ss_pred ccccCCCCCcccccceeEEEEEeecCchhHHHHHHHHHhcCcccceEEEE
Q 044491 382 GWIEQPNIPLCLLLHVKKIEIKKFEGQKDELGLVKYLLKNCKVLNKVIIR 431 (460)
Q Consensus 382 ~w~~~~~~~~~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~Le~l~i~ 431 (460)
+|++...+|+|+.+||+.|++.+|.|.+.|++|++|+++||++||+|+|.
T Consensus 1 ~W~~~~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 1 FWIEPSSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred CCCCCCCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 47333348999999999999999999999999999999999999999996
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.82 E-value=4e-09 Score=116.47 Aligned_cols=81 Identities=17% Similarity=0.110 Sum_probs=39.5
Q ss_pred cCceEEEEEeccCcceecCCccc-cCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccc
Q 044491 136 RNVCEIELFLGSHKLVRLPESIC-TLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALED 213 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 213 (460)
..++.|++..... ...+|..++ .+++|++|+|+++......| ...+++|++|+| ++.+. +.+...+..+++|+.
T Consensus 93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~~~--~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNMLS--GEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccC-ccccCCCCEEECcCCccc--ccCChHHhcCCCCCE
Confidence 3566666543321 224555444 55666666666654322211 234556666666 54443 122233445556666
Q ss_pred eEeeecc
Q 044491 214 LSIGHLD 220 (460)
Q Consensus 214 L~L~~c~ 220 (460)
|++.+|.
T Consensus 169 L~L~~n~ 175 (968)
T PLN00113 169 LDLGGNV 175 (968)
T ss_pred EECccCc
Confidence 6665554
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.77 E-value=5.7e-09 Score=115.24 Aligned_cols=80 Identities=21% Similarity=0.218 Sum_probs=34.6
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeee-ccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccc
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVI-KIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALED 213 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 213 (460)
.++++|++..... ...+|. ...++|++|+|++|... ..|.....+++|++|+| ++.+.. .+..-+..+++|+.
T Consensus 118 ~~L~~L~Ls~n~l-~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~ 192 (968)
T PLN00113 118 SSLRYLNLSNNNF-TGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG--KIPNSLTNLTSLEF 192 (968)
T ss_pred CCCCEEECcCCcc-ccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc--cCChhhhhCcCCCe
Confidence 3566666643321 111221 22345555555555332 12223345555555555 443321 12222344555555
Q ss_pred eEeeecc
Q 044491 214 LSIGHLD 220 (460)
Q Consensus 214 L~L~~c~ 220 (460)
|++.+|.
T Consensus 193 L~L~~n~ 199 (968)
T PLN00113 193 LTLASNQ 199 (968)
T ss_pred eeccCCC
Confidence 5555554
No 7
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.76 E-value=3e-09 Score=70.14 Aligned_cols=36 Identities=36% Similarity=0.613 Sum_probs=31.6
Q ss_pred cCCCChHHHHHHhcCCcchheeecccchhhhHhhcc
Q 044491 19 ISQLPDGILCHILSFLPIKCALATCILSSRWKFVWT 54 (460)
Q Consensus 19 is~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw~ 54 (460)
|+.||+||+.+||++|+.+|+++++.|||+|+.+..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 578999999999999999999999999999998753
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.59 E-value=5.9e-08 Score=108.11 Aligned_cols=124 Identities=15% Similarity=0.087 Sum_probs=66.3
Q ss_pred CceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceE
Q 044491 137 NVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLS 215 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~ 215 (460)
.++.|.+..+. ...+|..+ ...+|+.|+|.++.....+.....+++|+.|+| ++.... .+.. ++.+++|+.|.
T Consensus 590 ~Lr~L~~~~~~--l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~--~ip~-ls~l~~Le~L~ 663 (1153)
T PLN03210 590 KLRLLRWDKYP--LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK--EIPD-LSMATNLETLK 663 (1153)
T ss_pred ccEEEEecCCC--CCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC--cCCc-cccCCcccEEE
Confidence 56666664432 34455543 457788888877755555455556777777777 543221 1111 45577777777
Q ss_pred eeeccCCCceeEEE-eccccceEEEEeecCccccCCceeEEEecCCceeEEEeeee
Q 044491 216 IGHLDDKSLINFNI-SSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFC 270 (460)
Q Consensus 216 L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 270 (460)
|.+|.....-...+ ..++|+.|.+.+|...... ...+..++|+.|.++||.
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L----p~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL----PTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCcc----CCcCCCCCCCEEeCCCCC
Confidence 77775311100111 2256777777666422111 111245666666666654
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.45 E-value=1.3e-07 Score=105.39 Aligned_cols=80 Identities=20% Similarity=0.217 Sum_probs=39.1
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeee-eccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccc
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFV-IKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALED 213 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~-~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 213 (460)
.+++.|++..+.. ...+| .+..+++|+.|+|++|.. ...|.....+++|+.|++ .|.... .+...+ .+++|+.
T Consensus 634 ~~Lk~L~Ls~~~~-l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~--~Lp~~i-~l~sL~~ 708 (1153)
T PLN03210 634 TGLRNIDLRGSKN-LKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE--ILPTGI-NLKSLYR 708 (1153)
T ss_pred CCCCEEECCCCCC-cCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC--ccCCcC-CCCCCCE
Confidence 3566666643321 22333 244566677777766632 233344456666666666 553221 111111 3455556
Q ss_pred eEeeecc
Q 044491 214 LSIGHLD 220 (460)
Q Consensus 214 L~L~~c~ 220 (460)
|.+.+|.
T Consensus 709 L~Lsgc~ 715 (1153)
T PLN03210 709 LNLSGCS 715 (1153)
T ss_pred EeCCCCC
Confidence 6555553
No 10
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.28 E-value=1.5e-07 Score=62.37 Aligned_cols=38 Identities=39% Similarity=0.570 Sum_probs=31.8
Q ss_pred cCCCChHHHHHHhcCCcchheeecccchhhhHhhcccC
Q 044491 19 ISQLPDGILCHILSFLPIKCALATCILSSRWKFVWTLL 56 (460)
Q Consensus 19 is~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw~~~ 56 (460)
|++||+|++.+||++|+.+|+++++.|||+|+.+....
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence 56899999999999999999999999999999876543
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.24 E-value=1.4e-07 Score=90.43 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=16.5
Q ss_pred CceEEEEEeccCc---ceecCCccccCCcccEEEecee
Q 044491 137 NVCEIELFLGSHK---LVRLPESICTLKTLEVLKLYSD 171 (460)
Q Consensus 137 ~l~~L~l~~~~~~---~~~lp~~l~~~~~L~~L~L~~~ 171 (460)
.++++++..+... ...++..+...++|+.|+++++
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~ 61 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN 61 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc
Confidence 3666666444321 1223333444455666666555
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.23 E-value=1e-06 Score=86.09 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=52.3
Q ss_pred HhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEEEEeccCcccHHHHHhcCCCCCeEEEeecccccccCccccc
Q 044491 306 LLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAVKVELFGWRLLPIILSSLPNLEEFVFEKKLSCHFEEFGWIE 385 (460)
Q Consensus 306 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~~l~~~p~L~~L~I~~~~~~~~~~~~w~~ 385 (460)
.+.++++|+.|+++.+.+....+.....+..++.|++|.+...+.... -..-+...++||+|++.+..--. -
T Consensus 360 af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I-~krAfsgl~~LE~LdL~~NaiaS-------I 431 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI-PKRAFSGLEALEHLDLGDNAIAS-------I 431 (873)
T ss_pred HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec-chhhhccCcccceecCCCCccee-------e
Confidence 455666777777666443221111222244566667666622111110 12334456677777766531000 1
Q ss_pred CCCCCcccccceeEEEEEe--ecCchhHHHHHHHHHhcCcc
Q 044491 386 QPNIPLCLLLHVKKIEIKK--FEGQKDELGLVKYLLKNCKV 424 (460)
Q Consensus 386 ~~~~~~~~~~~L~~v~i~~--~~~~~~~~~~~~~ll~~a~~ 424 (460)
++. .+.+-+||++.|.. |-...+-.-+...+..+...
T Consensus 432 q~n--AFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq 470 (873)
T KOG4194|consen 432 QPN--AFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQ 470 (873)
T ss_pred ccc--ccccchhhhhhhcccceEEeccHHHHHHHHHhcccc
Confidence 111 11223777777753 55555556666666665533
No 13
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.19 E-value=5e-07 Score=83.00 Aligned_cols=252 Identities=15% Similarity=0.169 Sum_probs=134.6
Q ss_pred ccEEEEEecCCCCcchhhHHHHHHHh--cCceEEEEE--eccCcceecCC-------ccccCCcccEEEeceeeeeccCC
Q 044491 110 IGKFSLDRWALSDLTRFRSWVDSIIM--RNVCEIELF--LGSHKLVRLPE-------SICTLKTLEVLKLYSDFVIKIPP 178 (460)
Q Consensus 110 l~~l~l~~~~~~~~~~~~~wi~~~~~--~~l~~L~l~--~~~~~~~~lp~-------~l~~~~~L~~L~L~~~~~~~~~~ 178 (460)
+.++++. .+.-+....+|+..+.+ +.+++.++. +.+....++|. .+..|+.|+.|+|+.+.+..-
T Consensus 32 ~~~l~ls--gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~-- 107 (382)
T KOG1909|consen 32 LTKLDLS--GNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK-- 107 (382)
T ss_pred eEEEecc--CCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc--
Confidence 4454443 44556678899988776 234444441 11111222332 233455666666665532111
Q ss_pred CcccCCCCcEEEEEEEECCCccHHHHhccCCcccceEeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEec
Q 044491 179 SGLCFRSLKVLTVVLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIAT 258 (460)
Q Consensus 179 ~~~~l~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 258 (460)
....+..++++|..|+.|.|.+|.......-.+ +..|..|-. ....-+.
T Consensus 108 ------------------g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l-~~al~~l~~------------~kk~~~~ 156 (382)
T KOG1909|consen 108 ------------------GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRL-GRALFELAV------------NKKAASK 156 (382)
T ss_pred ------------------chHHHHHHHHhccCHHHHhhhcCCCChhHHHHH-HHHHHHHHH------------HhccCCC
Confidence 125688999999999999999996531100000 011111110 1112234
Q ss_pred CCceeEEEeeeee-------ceEEeecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhh-c
Q 044491 259 PNLELLNIHDFCM-------VSYMFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKI-Y 330 (460)
Q Consensus 259 p~L~~L~l~~~~~-------~~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~-~ 330 (460)
|+|+.+....+.. ....+...|.|+++.+..... .-.....+..-+..+++|+.|+++.+++...+.. .
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I---~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGI---RPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccc---cCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 5566555554322 111223456677666532221 0000124556688899999999999877544432 3
Q ss_pred cccCCCCCceeEEEE-EEec--cCccc-HHHHHhcCCCCCeEEEeecccccccCcccccCCCCCccc--ccceeEEEEEe
Q 044491 331 KDVFPKFPNVTCLAV-KVEL--FGWRL-LPIILSSLPNLEEFVFEKKLSCHFEEFGWIEQPNIPLCL--LLHVKKIEIKK 404 (460)
Q Consensus 331 ~~~~~~~~~L~~L~L-~~~~--~~~~~-l~~~l~~~p~L~~L~I~~~~~~~~~~~~w~~~~~~~~~~--~~~L~~v~i~~ 404 (460)
...++.+++|+.|++ .|-- .+... +..+-+..|+|+.|.+.+++-.+..+.. ...|. .+.|+.+.+.+
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~------la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA------LAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH------HHHHHhcchhhHHhcCCc
Confidence 345889999999999 5532 23333 3344456899999999997433322200 11111 35677777765
Q ss_pred e
Q 044491 405 F 405 (460)
Q Consensus 405 ~ 405 (460)
.
T Consensus 308 N 308 (382)
T KOG1909|consen 308 N 308 (382)
T ss_pred c
Confidence 3
No 14
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.14 E-value=8.3e-07 Score=56.49 Aligned_cols=34 Identities=44% Similarity=0.529 Sum_probs=31.7
Q ss_pred CChHHHHHHhcCCcchheeecccchhhhHhhccc
Q 044491 22 LPDGILCHILSFLPIKCALATCILSSRWKFVWTL 55 (460)
Q Consensus 22 LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw~~ 55 (460)
||+|++.+||++|+.+|+.+++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987644
No 15
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.04 E-value=5.4e-08 Score=91.19 Aligned_cols=235 Identities=13% Similarity=0.071 Sum_probs=141.6
Q ss_pred ccC-CcccEEEeceeeeeccCC---CcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCC---ceeEEE
Q 044491 158 CTL-KTLEVLKLYSDFVIKIPP---SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKS---LINFNI 229 (460)
Q Consensus 158 ~~~-~~L~~L~L~~~~~~~~~~---~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~---~~~~~i 229 (460)
.+| ..|+.|+|+||......+ -..++|+++.|.+ .|...++..+..+...|+.|+.|.+..|.... +..+.-
T Consensus 134 ~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 134 SRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred hhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 344 568888888885433211 1236888888888 88777777788888888888888888876421 222344
Q ss_pred eccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceE-Ee----ecCCCeeEEEEEEEecCCccccccccHH
Q 044491 230 SSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSY-MF----HELPPFTKVFIDIFYDDGWSWVQSGRAQ 304 (460)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~----~~~p~L~~l~l~~~~~~~~~~~~~~~~~ 304 (460)
.+++|+.|.+..|.-..-.+. ..+...+.+|+.+...||..... .+ +..+.+.++++.-+. ...+..+.
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv-~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~-----~lTD~~~~ 287 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGV-QALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCN-----QLTDEDLW 287 (483)
T ss_pred hhhhHHHhhhccCchhhcCcc-hHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhc-----cccchHHH
Confidence 577888888888853322221 44555666788887777754111 11 233344444432111 01123456
Q ss_pred HHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeecccccccCccc
Q 044491 305 RLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKKLSCHFEEFGW 383 (460)
Q Consensus 305 ~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~~~~~~~~~~w 383 (460)
.+..++..++.|..+..+..+. ..........++|+.|.+ .|.+.+..++..+-++||.|+.+.+..|..+.....
T Consensus 288 ~i~~~c~~lq~l~~s~~t~~~d-~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL-- 364 (483)
T KOG4341|consen 288 LIACGCHALQVLCYSSCTDITD-EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL-- 364 (483)
T ss_pred HHhhhhhHhhhhcccCCCCCch-HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH--
Confidence 6667778888888776332111 111122445688999999 888888888888888999999998888743322100
Q ss_pred ccCCCCCcccccceeEEEEEee
Q 044491 384 IEQPNIPLCLLLHVKKIEIKKF 405 (460)
Q Consensus 384 ~~~~~~~~~~~~~L~~v~i~~~ 405 (460)
.++ ...| +.||++.+..+
T Consensus 365 -~sl-s~~C--~~lr~lslshc 382 (483)
T KOG4341|consen 365 -ASL-SRNC--PRLRVLSLSHC 382 (483)
T ss_pred -hhh-ccCC--chhccCChhhh
Confidence 111 1223 56777777643
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.97 E-value=6e-07 Score=85.98 Aligned_cols=84 Identities=21% Similarity=0.092 Sum_probs=42.1
Q ss_pred CceEEEEEeccCc-----ceecCCccccCCcccEEEeceeeeec-cCCCcccC---CCCcEEEE-EEEECCCccHH---H
Q 044491 137 NVCEIELFLGSHK-----LVRLPESICTLKTLEVLKLYSDFVIK-IPPSGLCF---RSLKVLTV-VLEYPDNNLTE---R 203 (460)
Q Consensus 137 ~l~~L~l~~~~~~-----~~~lp~~l~~~~~L~~L~L~~~~~~~-~~~~~~~l---~~L~~L~L-~~~~~~~~~l~---~ 203 (460)
+++++.+...... ...++..+..+++|+.|+|++|.... .+.....+ ++|++|++ ++.+.+ .+.. .
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~-~~~~~l~~ 130 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD-RGLRLLAK 130 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch-HHHHHHHH
Confidence 4777776433211 11122334456677777777774421 11112222 34777777 665542 2222 2
Q ss_pred HhccC-CcccceEeeeccC
Q 044491 204 LFSIC-PALEDLSIGHLDD 221 (460)
Q Consensus 204 l~~~c-p~Le~L~L~~c~~ 221 (460)
.+..+ ++|++|.+.+|..
T Consensus 131 ~l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRL 149 (319)
T ss_pred HHHhCCCCceEEEcCCCcC
Confidence 23344 6677777777654
No 17
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=6.4e-07 Score=84.58 Aligned_cols=109 Identities=22% Similarity=0.176 Sum_probs=58.4
Q ss_pred ccCCcccEEEeceeeeeccC--CCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEE-eccc
Q 044491 158 CTLKTLEVLKLYSDFVIKIP--PSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNI-SSTT 233 (460)
Q Consensus 158 ~~~~~L~~L~L~~~~~~~~~--~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~~ 233 (460)
...|+|+.|+|+.+...... .....+++||+|.| .|-+. ..++..++..||.|+.|.+.++.......... ....
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 34566777777766432211 11225777888888 77765 57777778888888888887774211111111 1135
Q ss_pred cceEEEEeecCccccCCceeEEEecCCceeEEEeee
Q 044491 234 LKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDF 269 (460)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 269 (460)
|+.|.+.+....++.. .......|.|+-|.++.+
T Consensus 248 L~~LdLs~N~li~~~~--~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQ--GYKVGTLPGLNQLNLSST 281 (505)
T ss_pred HhhccccCCccccccc--ccccccccchhhhhcccc
Confidence 6666666654221111 223334455555555444
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.92 E-value=2.9e-06 Score=83.05 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=45.0
Q ss_pred ccCCcccEEEeceeeeeccCCCccc-CCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEEec-ccc
Q 044491 158 CTLKTLEVLKLYSDFVIKIPPSGLC-FRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNISS-TTL 234 (460)
Q Consensus 158 ~~~~~L~~L~L~~~~~~~~~~~~~~-l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~-~~L 234 (460)
.+.++|+.++|..+....+ |.+++ ..+|+.|.| +..+.+ --..-++..|.||.|+|+.+....+.....+. +.+
T Consensus 99 ~nl~nLq~v~l~~N~Lt~I-P~f~~~sghl~~L~L~~N~I~s--v~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRI-PRFGHESGHLEKLDLRHNLISS--VTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNI 175 (873)
T ss_pred hcCCcceeeeeccchhhhc-ccccccccceeEEeeecccccc--ccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence 3556677777776654444 44443 334777777 555542 12234555666777777666544333333322 456
Q ss_pred ceEEEEeec
Q 044491 235 KRLCLSFTN 243 (460)
Q Consensus 235 ~~L~l~~~~ 243 (460)
++|.+.+++
T Consensus 176 ~~L~La~N~ 184 (873)
T KOG4194|consen 176 KKLNLASNR 184 (873)
T ss_pred eEEeecccc
Confidence 666666553
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=9.6e-07 Score=83.44 Aligned_cols=206 Identities=17% Similarity=0.170 Sum_probs=132.7
Q ss_pred cCCcccEEEeceeeeeccCC--CcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCc--eeEEEeccc
Q 044491 159 TLKTLEVLKLYSDFVIKIPP--SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSL--INFNISSTT 233 (460)
Q Consensus 159 ~~~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~--~~~~i~~~~ 233 (460)
..+.|+...|.++.....+. .+..||+++.|+| ..-+.....+..++...|+||.|+|+.+..... .......++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45678888888885544422 4557999999999 777776777888999999999999999875421 222335679
Q ss_pred cceEEEEeecCccccCCceeEEEecCCceeEEEeeeee---ceEEeecCCCeeEEEEEEEecCCccccccccHHHHhhcC
Q 044491 234 LKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCM---VSYMFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSL 310 (460)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~---~~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l 310 (460)
|+.|.+..|+.- .. ....+...+|+|+.|.+.++.. .......+..|+++++..... .+ .+.......+
T Consensus 199 lK~L~l~~CGls-~k-~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l--i~----~~~~~~~~~l 270 (505)
T KOG3207|consen 199 LKQLVLNSCGLS-WK-DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL--ID----FDQGYKVGTL 270 (505)
T ss_pred hheEEeccCCCC-HH-HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc--cc----cccccccccc
Confidence 999999999621 11 1255667899999999988742 111223455777777742220 00 1122335677
Q ss_pred cceeEEEEeccchhhhhhh---ccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 311 TKAKFLALSADTVYALDKI---YKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 311 ~~l~~L~l~~~~~~~~~~~---~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
+.|+.|.++...+.+.... .......|++|+.|++ .+.-.+|..+- -++..++|+.|.+...
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~-~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN-HLRTLENLKHLRITLN 336 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccc-hhhccchhhhhhcccc
Confidence 8888888887655433221 1122567889999999 44444454443 3456678888877653
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.59 E-value=0.00017 Score=75.93 Aligned_cols=113 Identities=18% Similarity=0.176 Sum_probs=68.5
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
.+-..|++.... ...+|..+. ++|+.|.+.++.....|. ..++|++|+| ++.+.. +. ...++|+.|
T Consensus 201 ~~~~~LdLs~~~--LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lts---LP---~lp~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESG--LTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS---LP---VLPPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCC--CCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCc---cc---Cccccccee
Confidence 455666665443 345676554 478889988886555432 3578899999 665542 11 124678888
Q ss_pred EeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeee
Q 044491 215 SIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCM 271 (460)
Q Consensus 215 ~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 271 (460)
.+.++....+.. ...+|+.|.+.++.- ..+....|+|+.|+++++..
T Consensus 268 ~Ls~N~L~~Lp~---lp~~L~~L~Ls~N~L-------t~LP~~p~~L~~LdLS~N~L 314 (788)
T PRK15387 268 SIFSNPLTHLPA---LPSGLCKLWIFGNQL-------TSLPVLPPGLQELSVSDNQL 314 (788)
T ss_pred eccCCchhhhhh---chhhcCEEECcCCcc-------ccccccccccceeECCCCcc
Confidence 888876443322 224677777777641 11222347788888877643
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.57 E-value=2.2e-06 Score=88.15 Aligned_cols=69 Identities=23% Similarity=0.335 Sum_probs=48.2
Q ss_pred hhhHHHHHHHhcCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECC
Q 044491 125 RFRSWVDSIIMRNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPD 197 (460)
Q Consensus 125 ~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~ 197 (460)
.+..|+..++ +++.+..+... ...+|..++...+|+.|....|..-.+++....+++|++|+| .....+
T Consensus 255 ~lp~wi~~~~--nle~l~~n~N~--l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~ 324 (1081)
T KOG0618|consen 255 NLPEWIGACA--NLEALNANHNR--LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS 324 (1081)
T ss_pred cchHHHHhcc--cceEecccchh--HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc
Confidence 4457777654 57777664443 356676777777888888887766666666777999999999 776653
No 22
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=3.4e-06 Score=76.02 Aligned_cols=184 Identities=13% Similarity=0.093 Sum_probs=100.4
Q ss_pred CCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEEe-ccccceEEEEeecCccccCCceeEEEecCCce
Q 044491 185 SLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNIS-STTLKRLCLSFTNGVAYSNNWHKVMIATPNLE 262 (460)
Q Consensus 185 ~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~ 262 (460)
+|+.|+| ...+. ...+..+++.|..|+.|.|++...++.....|. ...|+.|.+++|.+.+-.+
T Consensus 186 Rlq~lDLS~s~it-~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~------------- 251 (419)
T KOG2120|consen 186 RLQHLDLSNSVIT-VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA------------- 251 (419)
T ss_pred hhHHhhcchhhee-HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH-------------
Confidence 4777777 33333 477889999999999999999876543222222 1345555555553221111
Q ss_pred eEEEeeeeeceEEeecCCCeeEEEEEEEecCCccccccccHHHHhh-cCcceeEEEEeccchhhhhhhccccCCCCCcee
Q 044491 263 LLNIHDFCMVSYMFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLN-SLTKAKFLALSADTVYALDKIYKDVFPKFPNVT 341 (460)
Q Consensus 263 ~L~l~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~-~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 341 (460)
....+.++.+|.++++..++... ..+.-... --.+++.|.+++..-.-...........+++|.
T Consensus 252 ---------~~ll~~scs~L~~LNlsWc~l~~------~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~ 316 (419)
T KOG2120|consen 252 ---------LQLLLSSCSRLDELNLSWCFLFT------EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLV 316 (419)
T ss_pred ---------HHHHHHhhhhHhhcCchHhhccc------hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCcee
Confidence 12233445555555554443111 11222222 234577777776321111111112255688888
Q ss_pred EEEE-EEeccCcccHHHHHhcCCCCCeEEEeecccccccCcccccCCC-CCc-ccccceeEEEEEeecC
Q 044491 342 CLAV-KVELFGWRLLPIILSSLPNLEEFVFEKKLSCHFEEFGWIEQPN-IPL-CLLLHVKKIEIKKFEG 407 (460)
Q Consensus 342 ~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~~~~~~~~~~w~~~~~-~~~-~~~~~L~~v~i~~~~~ 407 (460)
+|+| -+..... ++...+..+|.|++|.++.| |.-. +. +.+ -..+.|.++.+.|+..
T Consensus 317 ~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRC---Y~i~------p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 317 HLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRC---YDII------PETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred eeccccccccCc-hHHHHHHhcchheeeehhhh---cCCC------hHHeeeeccCcceEEEEeccccC
Confidence 8888 6666555 56666777888888888887 2111 11 111 1235788888876543
No 23
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.56 E-value=2.8e-07 Score=90.66 Aligned_cols=204 Identities=17% Similarity=0.158 Sum_probs=100.0
Q ss_pred ceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEE
Q 044491 150 LVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFN 228 (460)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~ 228 (460)
...+|..+|....|+.|+|+.+.....|.....-+++-.|+| +..+.+ .=..++-...-|-.|+|+++....+..-.
T Consensus 92 nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet--IPn~lfinLtDLLfLDLS~NrLe~LPPQ~ 169 (1255)
T KOG0444|consen 92 NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET--IPNSLFINLTDLLFLDLSNNRLEMLPPQI 169 (1255)
T ss_pred cCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc--CCchHHHhhHhHhhhccccchhhhcCHHH
Confidence 445666677777777777777655555445555566666666 444321 11233333444555566666543322111
Q ss_pred EeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeee----ceEEeecCCCeeEEEEEEEecCCccccccccHH
Q 044491 229 ISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCM----VSYMFHELPPFTKVFIDIFYDDGWSWVQSGRAQ 304 (460)
Q Consensus 229 i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~----~~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ 304 (460)
-+...|++|.++++.-..+. .+-.-+..+|+.|..++... .+..+.++.+|.++++.... -..+.
T Consensus 170 RRL~~LqtL~Ls~NPL~hfQ---LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~--------Lp~vP 238 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLNHFQ---LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN--------LPIVP 238 (1255)
T ss_pred HHHhhhhhhhcCCChhhHHH---HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC--------CCcch
Confidence 12235666666555310000 00111233444455554422 12233444555555543221 13455
Q ss_pred HHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEEEEeccCcccHHHHHhcCCCCCeEEEee
Q 044491 305 RLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAVKVELFGWRLLPIILSSLPNLEEFVFEK 372 (460)
Q Consensus 305 ~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~~l~~~p~L~~L~I~~ 372 (460)
..+-.+++|+.|.++++.+..+... ...+.+|++|++ .+.....+++-+-..|.|++|.+..
T Consensus 239 ecly~l~~LrrLNLS~N~iteL~~~----~~~W~~lEtLNl--SrNQLt~LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITELNMT----EGEWENLETLNL--SRNQLTVLPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred HHHhhhhhhheeccCcCceeeeecc----HHHHhhhhhhcc--ccchhccchHHHhhhHHHHHHHhcc
Confidence 6667777888888887655433222 223445666666 1223334555555666666666544
No 24
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.43 E-value=1.5e-06 Score=85.60 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=19.2
Q ss_pred eecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE
Q 044491 151 VRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV 191 (460)
Q Consensus 151 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L 191 (460)
..+|..+..|.+|++|++..+....+......+|+|+.+.+
T Consensus 45 ~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 45 EQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred hhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 34444455555555555554433333333444455554444
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.36 E-value=0.00049 Score=72.49 Aligned_cols=90 Identities=18% Similarity=0.133 Sum_probs=48.9
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
.+++.|.+.... ...+|. ..++|++|+|++|....+|. ..++|++|+| .+.+.. +.. ..+.|+.|
T Consensus 222 ~~L~~L~L~~N~--Lt~LP~---lp~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~L~~---Lp~---lp~~L~~L 287 (788)
T PRK15387 222 AHITTLVIPDNN--LTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH---LPA---LPSGLCKL 287 (788)
T ss_pred cCCCEEEccCCc--CCCCCC---CCCCCcEEEecCCccCcccC---cccccceeeccCCchhh---hhh---chhhcCEE
Confidence 368888875443 334554 25789999999886555432 2467788877 554331 111 12345555
Q ss_pred EeeeccCCCceeEEEeccccceEEEEee
Q 044491 215 SIGHLDDKSLINFNISSTTLKRLCLSFT 242 (460)
Q Consensus 215 ~L~~c~~~~~~~~~i~~~~L~~L~l~~~ 242 (460)
.+.+|....+. ...++|+.|.+.++
T Consensus 288 ~Ls~N~Lt~LP---~~p~~L~~LdLS~N 312 (788)
T PRK15387 288 WIFGNQLTSLP---VLPPGLQELSVSDN 312 (788)
T ss_pred ECcCCcccccc---ccccccceeECCCC
Confidence 55555433221 11245555555554
No 26
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=4.3e-05 Score=69.03 Aligned_cols=240 Identities=15% Similarity=0.176 Sum_probs=137.2
Q ss_pred ccEEEeceeeeecc---CCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCC-ceeEEEeccccceE
Q 044491 163 LEVLKLYSDFVIKI---PPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKS-LINFNISSTTLKRL 237 (460)
Q Consensus 163 L~~L~L~~~~~~~~---~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~-~~~~~i~~~~L~~L 237 (460)
+.-|.+.+|..... -.....+..+++|+| +..+.+++.+..++...|.|+.|+|+.+.... +..+.....+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 44556666633211 011225788999999 98888888899999999999999999987542 23333344589999
Q ss_pred EEEeecCccccCCceeEEEecCCceeEEEeeeeeceEEe-----ec-CCCeeEEEEEEEecCCccccccccHHHHhhcCc
Q 044491 238 CLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYMF-----HE-LPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLT 311 (460)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~-----~~-~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 311 (460)
.+.+.+- .+. ......-..|.++.|+++++......+ +. .+.+..+...-+. ..-| .+...+.+.+|
T Consensus 127 VLNgT~L-~w~-~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~--~~~w---~~~~~l~r~Fp 199 (418)
T KOG2982|consen 127 VLNGTGL-SWT-QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCL--EQLW---LNKNKLSRIFP 199 (418)
T ss_pred EEcCCCC-Chh-hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcH--HHHH---HHHHhHHhhcc
Confidence 9987641 000 113344567888888887763211111 11 1122222221111 0011 24555677899
Q ss_pred ceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeecccccccCcccccCCC--
Q 044491 312 KAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKKLSCHFEEFGWIEQPN-- 388 (460)
Q Consensus 312 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~~~~~~~~~~w~~~~~-- 388 (460)
++..+.+..+.+......-. .-.++.+--|+| ...-.+|.+ .+-|+.+|.|..|.+... |.| ....
T Consensus 200 nv~sv~v~e~PlK~~s~ek~--se~~p~~~~LnL~~~~idswas-vD~Ln~f~~l~dlRv~~~-------Pl~-d~l~~~ 268 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKG--SEPFPSLSCLNLGANNIDSWAS-VDALNGFPQLVDLRVSEN-------PLS-DPLRGG 268 (418)
T ss_pred cchheeeecCcccchhhccc--CCCCCcchhhhhcccccccHHH-HHHHcCCchhheeeccCC-------ccc-ccccCC
Confidence 99999998865544433211 334555556677 333334444 456788999999999875 233 1111
Q ss_pred CCcc-cccceeEEEEEee------cCchhHHHHHHHHHh
Q 044491 389 IPLC-LLLHVKKIEIKKF------EGQKDELGLVKYLLK 420 (460)
Q Consensus 389 ~~~~-~~~~L~~v~i~~~------~~~~~~~~~~~~ll~ 420 (460)
.... +..+|..|++.+- +....|..|++|...
T Consensus 269 err~llIaRL~~v~vLNGskIss~er~dSEr~fVRyym~ 307 (418)
T KOG2982|consen 269 ERRFLLIARLTKVQVLNGSKISSRERKDSERRFVRYYMS 307 (418)
T ss_pred cceEEEEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence 1111 2245555555442 234568888888766
No 27
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.33 E-value=6.4e-06 Score=83.65 Aligned_cols=133 Identities=23% Similarity=0.198 Sum_probs=78.7
Q ss_pred cCceEEEEEeccCc-ceecCCccccCCcccEEEecee-eeecc-----CCCcccCCCCcEEEE-EEEECCCccHHHHhcc
Q 044491 136 RNVCEIELFLGSHK-LVRLPESICTLKTLEVLKLYSD-FVIKI-----PPSGLCFRSLKVLTV-VLEYPDNNLTERLFSI 207 (460)
Q Consensus 136 ~~l~~L~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~~-~~~~~-----~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~ 207 (460)
..++++.+..+... ...+-.....|+.|+.|+++++ ..... ......+++|+.|++ .+...++.++..+...
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 46666666544321 1113345557888888888873 11111 122335788888888 7775556788888888
Q ss_pred CCcccceEeeeccC-C--CceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeee
Q 044491 208 CPALEDLSIGHLDD-K--SLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDF 269 (460)
Q Consensus 208 cp~Le~L~L~~c~~-~--~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 269 (460)
||+||.|.+.+|.. . ++..+.-.+++|+.|.+..|...+..+. ..+...+|+|+.|.+.+.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l-~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGL-EALLKNCPNLRELKLLSL 331 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHH-HHHHHhCcchhhhhhhhc
Confidence 88888888887763 2 3333344567788888888754322211 222334666666554443
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.31 E-value=9.5e-05 Score=63.37 Aligned_cols=64 Identities=16% Similarity=0.242 Sum_probs=28.7
Q ss_pred hcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccC-cccHHHHHhcCCCCCeEEEeec
Q 044491 308 NSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFG-WRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 308 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~-~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
..+++|+.|.++.+.+..+..+.. +..+++|+.|+| .+.-.. ...=..++..+|+|+.|+-...
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~--L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEP--LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGG--GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred HhCCcCCEEECcCCcCCChHHhHH--HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 457777777777766655444322 455677777777 333222 2224456778899988865543
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.30 E-value=0.0002 Score=75.48 Aligned_cols=198 Identities=16% Similarity=0.176 Sum_probs=101.1
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
.+...|++.... ...+|..+ .++|+.|+|+++.....|.. .+++|++|+| ++.+.+ +.. .-.+.|+.|
T Consensus 178 ~~~~~L~L~~~~--LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~--l~~nL~~L~Ls~N~Lts---LP~--~l~~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILG--LTTIPACI--PEQITTLILDNNELKSLPEN--LQGNIKTLYANSNQLTS---IPA--TLPDTIQEM 246 (754)
T ss_pred cCceEEEeCCCC--cCcCCccc--ccCCcEEEecCCCCCcCChh--hccCCCEEECCCCcccc---CCh--hhhccccEE
Confidence 355666664432 33455543 25788999988865554332 2468899988 665542 111 112478888
Q ss_pred EeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceEEeecCCCeeEEEEEEEecCC
Q 044491 215 SIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYMFHELPPFTKVFIDIFYDDG 294 (460)
Q Consensus 215 ~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~~~~ 294 (460)
.|.+|....+.. .+ ..+|+.|.+.++.-..+ +. .-.++|+.|+++++......-.-.++|+.+++.....
T Consensus 247 ~Ls~N~L~~LP~-~l-~s~L~~L~Ls~N~L~~L----P~--~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~L-- 316 (754)
T PRK15370 247 ELSINRITELPE-RL-PSALQSLDLFHNKISCL----PE--NLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSL-- 316 (754)
T ss_pred ECcCCccCcCCh-hH-hCCCCEEECcCCccCcc----cc--ccCCCCcEEECCCCccccCcccchhhHHHHHhcCCcc--
Confidence 888886543211 11 23688888876641111 11 0125788888887643211111112344444321110
Q ss_pred ccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 295 WSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 295 ~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
.. +.. ...++|+.|.++.+.+..++.. + .++|+.|++ .+. .. .++.-+ .++|++|+|.++
T Consensus 317 t~------LP~--~l~~sL~~L~Ls~N~Lt~LP~~----l--~~sL~~L~Ls~N~-L~--~LP~~l--p~~L~~LdLs~N 377 (754)
T PRK15370 317 TA------LPE--TLPPGLKTLEAGENALTSLPAS----L--PPELQVLDVSKNQ-IT--VLPETL--PPTITTLDVSRN 377 (754)
T ss_pred cc------CCc--cccccceeccccCCccccCChh----h--cCcccEEECCCCC-CC--cCChhh--cCCcCEEECCCC
Confidence 00 000 1125677777777544332211 1 257888888 432 11 122211 257888888875
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.26 E-value=1.9e-05 Score=72.81 Aligned_cols=259 Identities=15% Similarity=0.067 Sum_probs=135.8
Q ss_pred cCCcccEEEeceeeeecc-----CCCcccCCCCcEEEE-EEEECCC--------ccHHHHhccCCcccceEeeeccCC--
Q 044491 159 TLKTLEVLKLYSDFVIKI-----PPSGLCFRSLKVLTV-VLEYPDN--------NLTERLFSICPALEDLSIGHLDDK-- 222 (460)
Q Consensus 159 ~~~~L~~L~L~~~~~~~~-----~~~~~~l~~L~~L~L-~~~~~~~--------~~l~~l~~~cp~Le~L~L~~c~~~-- 222 (460)
...+++.|+|+|+.+..- .....+-++|+.-++ ++..... ..+..-+.+||.|+.|+|+++-+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 345677777777743211 011224556666666 4432221 123344668999999999998652
Q ss_pred C---ceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceEEeecCCCeeEEEEEEEecCCccccc
Q 044491 223 S---LINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYMFHELPPFTKVFIDIFYDDGWSWVQ 299 (460)
Q Consensus 223 ~---~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~ 299 (460)
+ +..+--++.+|++|.+.+|+ .+....- .-...|..|.. .-...+.|.|+.+..+-... .-..
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~G----lg~~ag~-~l~~al~~l~~------~kk~~~~~~Lrv~i~~rNrl---en~g 173 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCG----LGPEAGG-RLGRALFELAV------NKKAASKPKLRVFICGRNRL---ENGG 173 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCC----CChhHHH-HHHHHHHHHHH------HhccCCCcceEEEEeecccc---cccc
Confidence 1 11111246789999999986 2210000 00111222221 11223445565554432110 0000
Q ss_pred cccHHHHhhcCcceeEEEEeccchhhhhh-hccccCCCCCceeEEEEE---EeccCcccHHHHHhcCCCCCeEEEeeccc
Q 044491 300 SGRAQRLLNSLTKAKFLALSADTVYALDK-IYKDVFPKFPNVTCLAVK---VELFGWRLLPIILSSLPNLEEFVFEKKLS 375 (460)
Q Consensus 300 ~~~~~~~l~~l~~l~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~L~---~~~~~~~~l~~~l~~~p~L~~L~I~~~~~ 375 (460)
...+...++..+.++.+.+..+++.+-+. .....+..+++|+.|+|. ........+..-+...|+|+.|.+..|.-
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 12355667788889999888877654443 222336678888888882 22333445777778888888888888721
Q ss_pred ccccC-cccccCCCCCcccccceeEEEEEeecCchhHHHHHHHHHhcCcccceEEEEeccC
Q 044491 376 CHFEE-FGWIEQPNIPLCLLLHVKKIEIKKFEGQKDELGLVKYLLKNCKVLNKVIIRCKET 435 (460)
Q Consensus 376 ~~~~~-~~w~~~~~~~~~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~Le~l~i~~~~~ 435 (460)
. ..| ... .....-..++|+.+.+.+-.-.......+.--+..-+.|+++-+.-..-
T Consensus 254 ~-~~Ga~a~---~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 254 E-NEGAIAF---VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred c-cccHHHH---HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1 111 000 0011112457777777654333333333333334467788887766544
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.25 E-value=1.4e-05 Score=68.36 Aligned_cols=82 Identities=23% Similarity=0.229 Sum_probs=26.0
Q ss_pred CceEEEEEeccCcceecCCccc-cCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 137 NVCEIELFLGSHKLVRLPESIC-TLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
++++|++.+... ..+. .+. .+.+|+.|+|++|..... .....+++|++|++ .....+-+ ..+...||+|++|
T Consensus 20 ~~~~L~L~~n~I--~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~--~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQI--STIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSIS--EGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-C--HHHHHH-TT--EE
T ss_pred cccccccccccc--cccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccc--cchHHhCCcCCEE
Confidence 567777755432 2222 222 467889999998866555 55667888899988 65554311 2344568999999
Q ss_pred EeeeccCCCc
Q 044491 215 SIGHLDDKSL 224 (460)
Q Consensus 215 ~L~~c~~~~~ 224 (460)
.+.++....+
T Consensus 94 ~L~~N~I~~l 103 (175)
T PF14580_consen 94 YLSNNKISDL 103 (175)
T ss_dssp E-TTS---SC
T ss_pred ECcCCcCCCh
Confidence 9988876443
No 32
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.04 E-value=0.00074 Score=37.69 Aligned_cols=25 Identities=44% Similarity=0.731 Sum_probs=22.9
Q ss_pred CCcEEEE-EEEECCCccHHHHhccCC
Q 044491 185 SLKVLTV-VLEYPDNNLTERLFSICP 209 (460)
Q Consensus 185 ~L~~L~L-~~~~~~~~~l~~l~~~cp 209 (460)
+||+|+| .+.+.++..++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 5899999 999987778999999998
No 33
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.87 E-value=0.00082 Score=70.32 Aligned_cols=156 Identities=20% Similarity=0.183 Sum_probs=91.1
Q ss_pred CcccEEEeceeeeecc-C--CCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEEe-ccccc
Q 044491 161 KTLEVLKLYSDFVIKI-P--PSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNIS-STTLK 235 (460)
Q Consensus 161 ~~L~~L~L~~~~~~~~-~--~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~L~ 235 (460)
.+|++|+++|...... + ....-||+|++|.+ +..+.. +.|..+..++|+|+.|+|+++....+. .++ ..+|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~-~dF~~lc~sFpNL~sLDIS~TnI~nl~--GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN-DDFSQLCASFPNLRSLDISGTNISNLS--GISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc-hhHHHHhhccCccceeecCCCCccCcH--HHhccccHH
Confidence 5788888887633211 1 11236999999999 888875 558999999999999999998754321 111 12333
Q ss_pred eEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceEEeecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeE
Q 044491 236 RLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYMFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKF 315 (460)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 315 (460)
.|.+.+-.... ..-..-+-.+++|+.
T Consensus 199 ~L~mrnLe~e~------------------------------------------------------~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 199 VLSMRNLEFES------------------------------------------------------YQDLIDLFNLKKLRV 224 (699)
T ss_pred HHhccCCCCCc------------------------------------------------------hhhHHHHhcccCCCe
Confidence 33332221100 011122334566666
Q ss_pred EEEeccchhh---hhhhccccCCCCCceeEEEEEEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 316 LALSADTVYA---LDKIYKDVFPKFPNVTCLAVKVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 316 L~l~~~~~~~---~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
|+++...... ....+.+-...+|+|+.|+......+...+..+++.-|+|+.+.+-.|
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 6666522111 111111112336677777775445566668888898899999887665
No 34
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.83 E-value=2.6e-05 Score=64.79 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=23.7
Q ss_pred CCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 336 KFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 336 ~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
...+|+.|.+ .....+.-.++.-++....|++|+|++.
T Consensus 145 dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 145 DVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 3445555555 4444555556667777777888888774
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.82 E-value=0.00049 Score=72.70 Aligned_cols=54 Identities=17% Similarity=0.256 Sum_probs=28.8
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEE
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEY 195 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~ 195 (460)
.++..|++.... ...+|..++ ++|+.|+|++|.....|.. -.++|+.|+| ++.+
T Consensus 199 ~~L~~L~Ls~N~--LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~--l~~~L~~L~Ls~N~L 253 (754)
T PRK15370 199 EQITTLILDNNE--LKSLPENLQ--GNIKTLYANSNQLTSIPAT--LPDTIQEMELSINRI 253 (754)
T ss_pred cCCcEEEecCCC--CCcCChhhc--cCCCEEECCCCccccCChh--hhccccEEECcCCcc
Confidence 367777775443 334555443 4677777777654433221 1235666666 5443
No 36
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.72 E-value=0.00028 Score=71.60 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=30.6
Q ss_pred cccCCCChHHHHHHhcCCcchheeecccchhhhHhhccc
Q 044491 17 DRISQLPDGILCHILSFLPIKCALATCILSSRWKFVWTL 55 (460)
Q Consensus 17 D~is~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw~~ 55 (460)
+.....|+.....+....+..+......++++|......
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (482)
T KOG1947|consen 43 RFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS 81 (482)
T ss_pred eeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence 455677888888888888888888888888888865443
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.61 E-value=0.0011 Score=46.03 Aligned_cols=58 Identities=26% Similarity=0.347 Sum_probs=35.2
Q ss_pred CcccEEEeceeeeeccCC-CcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeecc
Q 044491 161 KTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLD 220 (460)
Q Consensus 161 ~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 220 (460)
|+|+.|++++|.....++ .+.++++|++|++ +..+. ..-...+.++|+|+.|++.+|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~--~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT--SIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES--EEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC--ccCHHHHcCCCCCCEEeCcCCc
Confidence 456777777775545443 3346777777777 55443 1122456777788888777764
No 38
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.19 E-value=0.00011 Score=61.14 Aligned_cols=42 Identities=29% Similarity=0.403 Sum_probs=22.4
Q ss_pred ceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE
Q 044491 150 LVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV 191 (460)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L 191 (460)
..++|..+.+.+.|+.|+++-+.....|..+++||.|+.|+|
T Consensus 68 ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 68 IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 445555555555555555555544444444555555555555
No 39
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.12 E-value=7.9e-05 Score=77.09 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=20.5
Q ss_pred CCCceeEEEEEEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 336 KFPNVTCLAVKVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 336 ~~~~L~~L~L~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
.++.|+.+++.|.+.+-..+...+.. |+||.|+++|.
T Consensus 450 ~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN 486 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGN 486 (1081)
T ss_pred hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCC
Confidence 34556666665544443333332222 78888888875
No 40
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.99 E-value=0.0021 Score=67.38 Aligned_cols=118 Identities=14% Similarity=0.195 Sum_probs=62.2
Q ss_pred HHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeecccccccCc
Q 044491 303 AQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKKLSCHFEEF 381 (460)
Q Consensus 303 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~~~~~~~~~ 381 (460)
...+...+|+|.+|+|++..+.++.. ...+.||+.|.+ .....+...+.. |-+..+|+.|+|+..... +..
T Consensus 165 F~~lc~sFpNL~sLDIS~TnI~nl~G-----IS~LknLq~L~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~--~~~ 236 (699)
T KOG3665|consen 165 FSQLCASFPNLRSLDISGTNISNLSG-----ISRLKNLQVLSMRNLEFESYQDLID-LFNLKKLRVLDISRDKNN--DDT 236 (699)
T ss_pred HHHHhhccCccceeecCCCCccCcHH-----HhccccHHHHhccCCCCCchhhHHH-HhcccCCCeeeccccccc--cch
Confidence 55666777788888877765554422 345566666666 222233333443 334678888888764111 100
Q ss_pred ccccCCCCCcccccceeEEEEEeecCchhHHHHHHHHHhcCcccceEEEE
Q 044491 382 GWIEQPNIPLCLLLHVKKIEIKKFEGQKDELGLVKYLLKNCKVLNKVIIR 431 (460)
Q Consensus 382 ~w~~~~~~~~~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~Le~l~i~ 431 (460)
+......+|.. -|-.+.+.++.|+.-..+++.-+++.-+.|+++.+.
T Consensus 237 --~ii~qYlec~~-~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 237 --KIIEQYLECGM-VLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred --HHHHHHHHhcc-cCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 00000223321 133333334446666667777777777777777643
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.0011 Score=60.22 Aligned_cols=160 Identities=16% Similarity=0.122 Sum_probs=97.6
Q ss_pred CCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCc
Q 044491 183 FRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNL 261 (460)
Q Consensus 183 l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L 261 (460)
...+.-|.| ++.+.+.+.+..+.+.|..+++|+|.++...++..+ ..+....|.|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI------------------------~~ile~lP~l 99 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEI------------------------GAILEQLPAL 99 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHH------------------------HHHHhcCccc
Confidence 335667888 888888888999999999999999999876543221 2233344555
Q ss_pred eeEEEeeeeeceEEeecCC----CeeEEEEEEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCC
Q 044491 262 ELLNIHDFCMVSYMFHELP----PFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKF 337 (460)
Q Consensus 262 ~~L~l~~~~~~~~~~~~~p----~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~ 337 (460)
+.|.++.+.- ...+..+| +|+.+.++... .+| .....++..+|.++.|+++.+....+...-...-+.-
T Consensus 100 ~~LNls~N~L-~s~I~~lp~p~~nl~~lVLNgT~---L~w---~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s 172 (418)
T KOG2982|consen 100 TTLNLSCNSL-SSDIKSLPLPLKNLRVLVLNGTG---LSW---TQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS 172 (418)
T ss_pred eEeeccCCcC-CCccccCcccccceEEEEEcCCC---CCh---hhhhhhhhcchhhhhhhhccchhhhhccccccccccc
Confidence 5555544432 12222222 33333332222 222 3456677888888888887754322111100111223
Q ss_pred CceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 338 PNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 338 ~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
+.+++|+. .|....|.....+-+-+||+..+.+-.|
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~ 209 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG 209 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC
Confidence 35777777 7777777778888889999999988776
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.75 E-value=0.0065 Score=54.66 Aligned_cols=216 Identities=14% Similarity=0.051 Sum_probs=113.4
Q ss_pred CCCCcchhhHHHHHHHhcCceEEEE-Eec----cCcceecC-------CccccCCcccEEEeceeeeeccCCCcccCCCC
Q 044491 119 ALSDLTRFRSWVDSIIMRNVCEIEL-FLG----SHKLVRLP-------ESICTLKTLEVLKLYSDFVIKIPPSGLCFRSL 186 (460)
Q Consensus 119 ~~~~~~~~~~wi~~~~~~~l~~L~l-~~~----~~~~~~lp-------~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L 186 (460)
.+.-+.....|+....+ +++.|.+ ++. +....+++ ..+..||.|+..+|+.+.+..-
T Consensus 39 GNtigtEA~e~l~~~ia-~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~---------- 107 (388)
T COG5238 39 GNTIGTEAMEELCNVIA-NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE---------- 107 (388)
T ss_pred CCcccHHHHHHHHHHHh-hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc----------
Confidence 33445567788887766 3444444 111 11111122 2334566666666665532110
Q ss_pred cEEEEEEEECCCccHHHHhccCCcccceEeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEE
Q 044491 187 KVLTVVLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNI 266 (460)
Q Consensus 187 ~~L~L~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l 266 (460)
....+..+++.-..|+.|.+.+|.......-+| +..|.+|-. ..-..+.|.|+.+..
T Consensus 108 ----------~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~ri-gkal~~la~------------nKKaa~kp~Le~vic 164 (388)
T COG5238 108 ----------FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRI-GKALFHLAY------------NKKAADKPKLEVVIC 164 (388)
T ss_pred ----------cchHHHHHHhcCCCceeEEeecCCCCccchhHH-HHHHHHHHH------------HhhhccCCCceEEEe
Confidence 135678888989999999999985421111111 012222211 122335677777776
Q ss_pred eeeeece-------EEeecCCCeeEEEEEEEecCCccccccccHHH--HhhcCcceeEEEEeccchhhhhh-hccccCCC
Q 044491 267 HDFCMVS-------YMFHELPPFTKVFIDIFYDDGWSWVQSGRAQR--LLNSLTKAKFLALSADTVYALDK-IYKDVFPK 336 (460)
Q Consensus 267 ~~~~~~~-------~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~--~l~~l~~l~~L~l~~~~~~~~~~-~~~~~~~~ 336 (460)
..+..-. ..+.....|+.+.+.-.. .. ..+..+.. -+.-+.+|+.|++..+++...+. +....++.
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNg--Ir--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~ 240 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNG--IR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE 240 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecC--cC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence 5543211 111222456665553221 10 01112222 24567899999999977654332 33445888
Q ss_pred CCceeEEEE-EEeccCcccHHHHHhc-----CCCCCeEEEeec
Q 044491 337 FPNVTCLAV-KVELFGWRLLPIILSS-----LPNLEEFVFEKK 373 (460)
Q Consensus 337 ~~~L~~L~L-~~~~~~~~~l~~~l~~-----~p~L~~L~I~~~ 373 (460)
+++|+.|.+ -| -.+..+...+++. .|+|+.|...+.
T Consensus 241 W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 241 WNLLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred cchhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchh
Confidence 999999999 44 3333444444443 588888877764
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.72 E-value=0.0015 Score=59.38 Aligned_cols=202 Identities=16% Similarity=0.125 Sum_probs=113.0
Q ss_pred eecCCccccCCcccEEEeceeeee----c-----cCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeecc
Q 044491 151 VRLPESICTLKTLEVLKLYSDFVI----K-----IPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLD 220 (460)
Q Consensus 151 ~~lp~~l~~~~~L~~L~L~~~~~~----~-----~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 220 (460)
+.+...+.-|..|+.|..++.... . .+-....|.+|+++.+ .|. .+.+..+...=|.|.++.+++..
T Consensus 172 ~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~s~ 248 (490)
T KOG1259|consen 172 YDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHNTT 248 (490)
T ss_pred cchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc---hhheeceeecCchhheeeeeccc
Confidence 344444444556666666554210 0 0011224666666666 553 23455555566777777766653
Q ss_pred CCCce---------------------eEEEec---cccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceE-E
Q 044491 221 DKSLI---------------------NFNISS---TTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSY-M 275 (460)
Q Consensus 221 ~~~~~---------------------~~~i~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~ 275 (460)
..... .+.... ..|..|.++.+. +. ......--+|+++.|+++.+....+ .
T Consensus 249 ~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~---I~-~iDESvKL~Pkir~L~lS~N~i~~v~n 324 (490)
T KOG1259|consen 249 IQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNL---IT-QIDESVKLAPKLRRLILSQNRIRTVQN 324 (490)
T ss_pred ccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccc---hh-hhhhhhhhccceeEEeccccceeeehh
Confidence 21111 111112 245566665552 11 1111223479999999998754222 3
Q ss_pred eecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCccc
Q 044491 276 FHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRL 354 (460)
Q Consensus 276 ~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~ 354 (460)
+..+++|+++++..... ..+..+-..+.++++|.+..+.+++++. +.++-.|..|++ .+.-.+.+.
T Consensus 325 La~L~~L~~LDLS~N~L--------s~~~Gwh~KLGNIKtL~La~N~iE~LSG-----L~KLYSLvnLDl~~N~Ie~lde 391 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLL--------AECVGWHLKLGNIKTLKLAQNKIETLSG-----LRKLYSLVNLDLSSNQIEELDE 391 (490)
T ss_pred hhhcccceEeecccchh--------HhhhhhHhhhcCEeeeehhhhhHhhhhh-----hHhhhhheeccccccchhhHHH
Confidence 56678888888743321 2344455677889999998888777665 445667888888 333223333
Q ss_pred HHHHHhcCCCCCeEEEeec
Q 044491 355 LPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 355 l~~~l~~~p~L~~L~I~~~ 373 (460)
+ .-+++.|+|+++.+.+.
T Consensus 392 V-~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 392 V-NHIGNLPCLETLRLTGN 409 (490)
T ss_pred h-cccccccHHHHHhhcCC
Confidence 3 34678899999988774
No 44
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.00065 Score=61.09 Aligned_cols=99 Identities=18% Similarity=0.198 Sum_probs=58.3
Q ss_pred eeEEEeeeeeceEEe-ecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCce
Q 044491 262 ELLNIHDFCMVSYMF-HELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNV 340 (460)
Q Consensus 262 ~~L~l~~~~~~~~~~-~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L 340 (460)
+.|+.|||...++.+ ..+|.|+.+.+.+.. ..-..-+..|++|+.|.|..+.+.++..+.. +..+++|
T Consensus 22 kKLNcwg~~L~DIsic~kMp~lEVLsLSvNk---------IssL~pl~rCtrLkElYLRkN~I~sldEL~Y--LknlpsL 90 (388)
T KOG2123|consen 22 KKLNCWGCGLDDISICEKMPLLEVLSLSVNK---------ISSLAPLQRCTRLKELYLRKNCIESLDELEY--LKNLPSL 90 (388)
T ss_pred hhhcccCCCccHHHHHHhcccceeEEeeccc---------cccchhHHHHHHHHHHHHHhcccccHHHHHH--HhcCchh
Confidence 344444443333322 245555555554433 2233446678888888888777777666544 6667777
Q ss_pred eEEEE-E--E-eccCcccHHHHHhcCCCCCeEEEe
Q 044491 341 TCLAV-K--V-ELFGWRLLPIILSSLPNLEEFVFE 371 (460)
Q Consensus 341 ~~L~L-~--~-~~~~~~~l~~~l~~~p~L~~L~I~ 371 (460)
+.|=| . | ...+..-=..+|+..|||++|+=.
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 77777 2 2 233333456788999999999643
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.41 E-value=0.0073 Score=55.07 Aligned_cols=174 Identities=16% Similarity=0.198 Sum_probs=103.1
Q ss_pred cCCCCcEEEE-EEEECCC--ccHHH----HhccCCcccceEeeeccCCCceeEEEeccccceEEEEeecCccccC-----
Q 044491 182 CFRSLKVLTV-VLEYPDN--NLTER----LFSICPALEDLSIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSN----- 249 (460)
Q Consensus 182 ~l~~L~~L~L-~~~~~~~--~~l~~----l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~----- 249 (460)
.+.+|+.|.. .+.-.-+ +...+ =++.+.+|..+.++.|....+..+...-|+|+.+.+...--- +..
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~-~~~~l~pe 258 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQ-DVPSLLPE 258 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccc-ccccccch
Confidence 4678888888 6643211 11222 245688999999999987666667777789999988765200 000
Q ss_pred -------------CceeEEEec---CCceeEEEeeeeec--eEEeecCCCeeEEEEEEEecCCccccccccHHHHhhcCc
Q 044491 250 -------------NWHKVMIAT---PNLELLNIHDFCMV--SYMFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLT 311 (460)
Q Consensus 250 -------------~~~~~~~~~---p~L~~L~l~~~~~~--~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 311 (460)
.-......+ ..|+.++++++... ..+..-+|.++.+++.-.. .....-++.++
T Consensus 259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~---------i~~v~nLa~L~ 329 (490)
T KOG1259|consen 259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR---------IRTVQNLAELP 329 (490)
T ss_pred hhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccc---------eeeehhhhhcc
Confidence 001122222 35777888776541 2233346677766663221 11222377888
Q ss_pred ceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 312 KAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 312 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
+++.|+++++.+.....+ -.++.|++.|.| .+.-.+..++ +..=+|..|++.+.
T Consensus 330 ~L~~LDLS~N~Ls~~~Gw----h~KLGNIKtL~La~N~iE~LSGL----~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 330 QLQLLDLSGNLLAECVGW----HLKLGNIKTLKLAQNKIETLSGL----RKLYSLVNLDLSSN 384 (490)
T ss_pred cceEeecccchhHhhhhh----HhhhcCEeeeehhhhhHhhhhhh----Hhhhhheecccccc
Confidence 999999998776555444 446788999988 4432333333 33446777777664
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.23 E-value=0.006 Score=56.21 Aligned_cols=38 Identities=37% Similarity=0.522 Sum_probs=35.5
Q ss_pred CccccCCCC----hHHHHHHhcCCcchheeecccchhhhHhh
Q 044491 15 KEDRISQLP----DGILCHILSFLPIKCALATCILSSRWKFV 52 (460)
Q Consensus 15 ~~D~is~LP----d~iL~~Ils~L~~~d~~~~s~vskrWr~l 52 (460)
..|.|+.|| |+|...|||||+..++.++..|||+|+++
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 468999999 99999999999999999999999999863
No 47
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.14 E-value=0.0018 Score=57.80 Aligned_cols=111 Identities=21% Similarity=0.121 Sum_probs=66.7
Q ss_pred cCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEE--eccccc
Q 044491 159 TLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNI--SSTTLK 235 (460)
Q Consensus 159 ~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i--~~~~L~ 235 (460)
....|..|++.++..... ..+-.+|+|++|.+ ...+....++.-++..||+|+.|+++++....+..+.- ..++|.
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 345566666666632221 22334778899999 66444456788888889999999999997654333322 124677
Q ss_pred eEEEEeecCccccCCceeEEEecCCceeEEEeeee
Q 044491 236 RLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFC 270 (460)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 270 (460)
.|.+.+|........=..+..-+|+|++|+-.+..
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 78888885332211102222346777777655543
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.01 E-value=0.018 Score=62.24 Aligned_cols=82 Identities=21% Similarity=0.163 Sum_probs=58.7
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
+.++.|+++.+.. ..++|..+...-+|++|+|++......|.....+..|.+|++ ..... ..+..+....++|+.|
T Consensus 571 ~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l--~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 571 PLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRL--ESIPGILLELQSLRVL 647 (889)
T ss_pred cceEEEECCCCCc-cCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccc--ccccchhhhcccccEE
Confidence 4666666665332 678888888888888888888866667677778888888888 55432 2334556668889999
Q ss_pred Eeeecc
Q 044491 215 SIGHLD 220 (460)
Q Consensus 215 ~L~~c~ 220 (460)
.+-...
T Consensus 648 ~l~~s~ 653 (889)
T KOG4658|consen 648 RLPRSA 653 (889)
T ss_pred Eeeccc
Confidence 888765
No 49
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.28 E-value=0.017 Score=52.87 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=32.3
Q ss_pred CccccCCCChHHHHHHhcCC-----cchheeecccchhhhHhh
Q 044491 15 KEDRISQLPDGILCHILSFL-----PIKCALATCILSSRWKFV 52 (460)
Q Consensus 15 ~~D~is~LPd~iL~~Ils~L-----~~~d~~~~s~vskrWr~l 52 (460)
.-+.|+.||||||..||.+. +.+++.++|+|||.|+..
T Consensus 103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 34568899999999999754 579999999999999864
No 50
>PLN03150 hypothetical protein; Provisional
Probab=94.19 E-value=0.029 Score=58.80 Aligned_cols=79 Identities=18% Similarity=0.079 Sum_probs=52.7
Q ss_pred ccEEEeceeeee-ccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEE-eccccceEEE
Q 044491 163 LEVLKLYSDFVI-KIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNI-SSTTLKRLCL 239 (460)
Q Consensus 163 L~~L~L~~~~~~-~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l 239 (460)
++.|+|+++... ..|+....+++|+.|+| .+.+. +.+...+..++.|+.|+|.++...+...-.+ ..++|+.|.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~--g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR--GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc--CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 677888877443 23445567888888888 76654 3344557778888888888887654222222 3467888888
Q ss_pred Eeec
Q 044491 240 SFTN 243 (460)
Q Consensus 240 ~~~~ 243 (460)
.++.
T Consensus 498 s~N~ 501 (623)
T PLN03150 498 NGNS 501 (623)
T ss_pred cCCc
Confidence 7774
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.19 E-value=0.063 Score=37.10 Aligned_cols=55 Identities=25% Similarity=0.361 Sum_probs=41.0
Q ss_pred CceEEEEEeccCcceecCCcc-ccCCcccEEEeceeeeeccCC-CcccCCCCcEEEE-EE
Q 044491 137 NVCEIELFLGSHKLVRLPESI-CTLKTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VL 193 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~ 193 (460)
++++|++..+. ...+|... ..+++|++|+|+++.....++ .+..+++|++|++ ++
T Consensus 2 ~L~~L~l~~n~--l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNK--LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSST--ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCC--CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 57778886543 55677654 468999999999997666544 4579999999998 53
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.19 E-value=0.059 Score=58.32 Aligned_cols=80 Identities=19% Similarity=0.155 Sum_probs=45.1
Q ss_pred CcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEE-CCCccHHHHhccCCcccceEeeeccCCCceeEEEe-ccccceE
Q 044491 161 KTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEY-PDNNLTERLFSICPALEDLSIGHLDDKSLINFNIS-STTLKRL 237 (460)
Q Consensus 161 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~-~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~L~~L 237 (460)
...+.+.+-++..... +....+|.|++|-+ .... . ...-..++...|.|..|+|++|...+--+-.|+ .-+||.|
T Consensus 523 ~~~rr~s~~~~~~~~~-~~~~~~~~L~tLll~~n~~~l-~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI-AGSSENPKLRTLLLQRNSDWL-LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhc-cCCCCCCccceEEEeecchhh-hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 4667777766644443 44556778888888 6542 1 122235577788899999988652111111122 1256666
Q ss_pred EEEee
Q 044491 238 CLSFT 242 (460)
Q Consensus 238 ~l~~~ 242 (460)
.+.+.
T Consensus 601 ~L~~t 605 (889)
T KOG4658|consen 601 DLSDT 605 (889)
T ss_pred cccCC
Confidence 55554
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.06 E-value=0.014 Score=37.33 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=11.5
Q ss_pred cccEEEeceeeeeccCCCcccCCCCcEEEE
Q 044491 162 TLEVLKLYSDFVIKIPPSGLCFRSLKVLTV 191 (460)
Q Consensus 162 ~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L 191 (460)
+|++|+|+++...+.++....+++|+.|++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l 31 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNL 31 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEe
Confidence 455555555543333222333333333333
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.76 E-value=0.066 Score=52.14 Aligned_cols=135 Identities=13% Similarity=0.075 Sum_probs=68.9
Q ss_pred hccCCcccceEeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceEEeecCCCeeE
Q 044491 205 FSICPALEDLSIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYMFHELPPFTK 284 (460)
Q Consensus 205 ~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~ 284 (460)
+..|++++.|.+.+|....+. .-.++|+.|.+.+|...... .. .-.++|++|.+++|.... .-.++|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsL---P~--~LP~nLe~L~Ls~Cs~L~---sLP~sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTL---PG--SIPEGLEKLTVCHCPEIS---GLPESVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccC---Cc--hhhhhhhheEccCccccc---ccccccce
Confidence 445788888888888543332 22236888888887421110 10 113578888888774311 11235666
Q ss_pred EEEEEEecCCccccccccHHHHhhcC-cceeEEEEeccchhhhhhhccccCC-CC-CceeEEEE-EEeccCcccHHHHHh
Q 044491 285 VFIDIFYDDGWSWVQSGRAQRLLNSL-TKAKFLALSADTVYALDKIYKDVFP-KF-PNVTCLAV-KVELFGWRLLPIILS 360 (460)
Q Consensus 285 l~l~~~~~~~~~~~~~~~~~~~l~~l-~~l~~L~l~~~~~~~~~~~~~~~~~-~~-~~L~~L~L-~~~~~~~~~l~~~l~ 360 (460)
+.+.... .. -+..+ ++|+.|.+........ ...+ .+ ++|+.|.+ .|..... ..
T Consensus 117 L~L~~n~-----------~~-~L~~LPssLk~L~I~~~n~~~~-----~~lp~~LPsSLk~L~Is~c~~i~L------P~ 173 (426)
T PRK15386 117 LEIKGSA-----------TD-SIKNVPNGLTSLSINSYNPENQ-----ARIDNLISPSLKTLSLTGCSNIIL------PE 173 (426)
T ss_pred EEeCCCC-----------Cc-ccccCcchHhheeccccccccc-----cccccccCCcccEEEecCCCcccC------cc
Confidence 6553111 00 12233 3567777643111000 0011 12 47899999 6553321 11
Q ss_pred cC-CCCCeEEEeec
Q 044491 361 SL-PNLEEFVFEKK 373 (460)
Q Consensus 361 ~~-p~L~~L~I~~~ 373 (460)
.. ++|+.|.+..+
T Consensus 174 ~LP~SLk~L~ls~n 187 (426)
T PRK15386 174 KLPESLQSITLHIE 187 (426)
T ss_pred cccccCcEEEeccc
Confidence 22 48999988653
No 55
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.16 E-value=0.0003 Score=66.33 Aligned_cols=159 Identities=19% Similarity=0.100 Sum_probs=71.9
Q ss_pred ceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEE
Q 044491 150 LVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFN 228 (460)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~ 228 (460)
..++|..+.+..+|+.|+.+.+.....++....+..|..|.. +....+ +..-...|..|..|.+.++.......-.
T Consensus 103 ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~s---lp~~~~~~~~l~~l~~~~n~l~~l~~~~ 179 (565)
T KOG0472|consen 103 LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISS---LPEDMVNLSKLSKLDLEGNKLKALPENH 179 (565)
T ss_pred HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccccccc---CchHHHHHHHHHHhhccccchhhCCHHH
Confidence 445666666666666666666655555555556666666665 443322 1112223445666666665533222222
Q ss_pred EeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeece-EEeecCCCeeEEEEEEEecCCcccccccc-HHHH
Q 044491 229 ISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVS-YMFHELPPFTKVFIDIFYDDGWSWVQSGR-AQRL 306 (460)
Q Consensus 229 i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~-~~~~~~p~L~~l~l~~~~~~~~~~~~~~~-~~~~ 306 (460)
+.-.+|++|...... .+.++.-.....+|+.|.+..+.... ..|.++..|+++.++.... .. -.+.
T Consensus 180 i~m~~L~~ld~~~N~----L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i--------~~lpae~ 247 (565)
T KOG0472|consen 180 IAMKRLKHLDCNSNL----LETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQI--------EMLPAEH 247 (565)
T ss_pred HHHHHHHhcccchhh----hhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHH--------HhhHHHH
Confidence 222334444332221 11111111223344444444433211 2444555566655533220 01 1223
Q ss_pred hhcCcceeEEEEeccch
Q 044491 307 LNSLTKAKFLALSADTV 323 (460)
Q Consensus 307 l~~l~~l~~L~l~~~~~ 323 (460)
.+.++++..|++..+.+
T Consensus 248 ~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNKL 264 (565)
T ss_pred hcccccceeeecccccc
Confidence 44566666666666544
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.03 E-value=0.038 Score=35.34 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=27.5
Q ss_pred CCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCC
Q 044491 184 RSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDK 222 (460)
Q Consensus 184 ~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~ 222 (460)
++|++|+| +..+. .+...++.||+|+.|.+.++...
T Consensus 1 ~~L~~L~l~~N~i~---~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT---DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S---SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc---ccCchHhCCCCCCEEEecCCCCC
Confidence 57899999 77665 36666889999999999999754
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.85 E-value=0.14 Score=44.25 Aligned_cols=88 Identities=23% Similarity=0.278 Sum_probs=55.2
Q ss_pred cCCcccEEEeceeeeeccCCCcc-cCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEEeccccce
Q 044491 159 TLKTLEVLKLYSDFVIKIPPSGL-CFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNISSTTLKR 236 (460)
Q Consensus 159 ~~~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~ 236 (460)
..+.|..|.|+++....+-|... .+|+|++|.| +..+..-+++.. +.+||.|++|.+.++.......
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~---------- 130 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKN---------- 130 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccC----------
Confidence 46788888888887666544433 5788888888 655443233333 4568888888888876422110
Q ss_pred EEEEeecCccccCCceeEEEecCCceeEEEeeee
Q 044491 237 LCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFC 270 (460)
Q Consensus 237 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 270 (460)
|- .-+.-..|+|+.|++.+..
T Consensus 131 ----------YR---~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 131 ----------YR---LYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ----------ce---eEEEEecCcceEeehhhhh
Confidence 00 2233357899999988753
No 58
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.69 E-value=0.049 Score=52.30 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=33.3
Q ss_pred cCCCChHHHHHHhcCCc-chheeecccchhhhHhhccc
Q 044491 19 ISQLPDGILCHILSFLP-IKCALATCILSSRWKFVWTL 55 (460)
Q Consensus 19 is~LPd~iL~~Ils~L~-~~d~~~~s~vskrWr~lw~~ 55 (460)
+++||+|+|..|..+|+ .-|++|.+.||+.||.....
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 67899999999999996 57999999999999986554
No 59
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.48 E-value=0.032 Score=55.15 Aligned_cols=163 Identities=18% Similarity=0.183 Sum_probs=89.6
Q ss_pred CCcccEEEeceeeeeccCCCcccCC-CCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEEeccccceE
Q 044491 160 LKTLEVLKLYSDFVIKIPPSGLCFR-SLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNISSTTLKRL 237 (460)
Q Consensus 160 ~~~L~~L~L~~~~~~~~~~~~~~l~-~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L 237 (460)
.+.++.|++.++...+.++....++ +|+.|++ ...+.. +..-+..+|+|+.|.+.++............+.|+.|
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~---l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES---LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhh---hhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 3568888888886666655555553 8888888 554432 2134667888888888888765444333355677777
Q ss_pred EEEeecCccccCCceeEEE--ecCC-ceeEEEeeeee--ceEEeecCCCeeEEEEEEEecCCccccccccHHHHhhcCcc
Q 044491 238 CLSFTNGVAYSNNWHKVMI--ATPN-LELLNIHDFCM--VSYMFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTK 312 (460)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~--~~p~-L~~L~l~~~~~--~~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~ 312 (460)
.+.+..- ..+.. ..++ |++|.+++... ....+.+...+..+.+.... .......+..+++
T Consensus 192 ~ls~N~i-------~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~--------~~~~~~~~~~l~~ 256 (394)
T COG4886 192 DLSGNKI-------SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK--------LEDLPESIGNLSN 256 (394)
T ss_pred eccCCcc-------ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce--------eeeccchhccccc
Confidence 7777641 11111 2333 77777776621 11223333444333321110 0111345566666
Q ss_pred eeEEEEeccchhhhhhhccccCCCCCceeEEEE
Q 044491 313 AKFLALSADTVYALDKIYKDVFPKFPNVTCLAV 345 (460)
Q Consensus 313 l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 345 (460)
++.|.++.+.+..... ...+.+++.|++
T Consensus 257 l~~L~~s~n~i~~i~~-----~~~~~~l~~L~~ 284 (394)
T COG4886 257 LETLDLSNNQISSISS-----LGSLTNLRELDL 284 (394)
T ss_pred cceecccccccccccc-----ccccCccCEEec
Confidence 7777776654433322 344556666666
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.36 E-value=0.22 Score=43.10 Aligned_cols=99 Identities=16% Similarity=0.213 Sum_probs=60.3
Q ss_pred CcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECC-CccHHHHhccCCcccceEeeeccCCCceeEEEeccccceEE
Q 044491 161 KTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPD-NNLTERLFSICPALEDLSIGHLDDKSLINFNISSTTLKRLC 238 (460)
Q Consensus 161 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~-~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~ 238 (460)
.+...++|+.+..... +.+-++++|.+|.| ...+.. +. .+....|+|..|.+.++....++.
T Consensus 42 d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p---~L~~~~p~l~~L~LtnNsi~~l~d------------ 105 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDP---DLDTFLPNLKTLILTNNSIQELGD------------ 105 (233)
T ss_pred cccceecccccchhhc-ccCCCccccceEEecCCcceeecc---chhhhccccceEEecCcchhhhhh------------
Confidence 3455677777644333 44556777888888 444332 12 233345777777777765432211
Q ss_pred EEeecCccccCCceeEEEecCCceeEEEeeeee------ceEEeecCCCeeEEEEE
Q 044491 239 LSFTNGVAYSNNWHKVMIATPNLELLNIHDFCM------VSYMFHELPPFTKVFID 288 (460)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~------~~~~~~~~p~L~~l~l~ 288 (460)
..-...||+|++|.+-|++. .-|.+..+|+|+.++..
T Consensus 106 -------------l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 106 -------------LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred -------------cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 11123577888888887654 45677889999998873
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=90.93 E-value=0.23 Score=51.13 Aligned_cols=66 Identities=17% Similarity=0.123 Sum_probs=41.3
Q ss_pred CCCCcccEEEEEecCCCCcchhh---HHHHHHHhcCceEEEE-EeccCcceecCCccccCCcccEEEeceeee
Q 044491 105 TNPTAIGKFSLDRWALSDLTRFR---SWVDSIIMRNVCEIEL-FLGSHKLVRLPESICTLKTLEVLKLYSDFV 173 (460)
Q Consensus 105 ~~~~~l~~l~l~~~~~~~~~~~~---~wi~~~~~~~l~~L~l-~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~ 173 (460)
..|++++.|+.......+...+. ..+++.. +...+.+ ......+.. |..++...+|++|.|++|..
T Consensus 52 ~~g~~~~~f~a~~s~~ads~vl~qLq~i~d~lq--kt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 52 LSGAPVDYFRAYVSDNADSRVLEQLQRILDFLQ--KTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDL 121 (1096)
T ss_pred cCCCCCceeEEecCCcccchHHHHHHHHHHHHh--hheeeeecccCCCCCCC-CceeccccceeeEEecCcch
Confidence 34567899998876655544333 2233332 3444554 334433444 88889999999999999843
No 62
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=89.57 E-value=0.088 Score=52.00 Aligned_cols=167 Identities=20% Similarity=0.178 Sum_probs=98.7
Q ss_pred CceEEEEEeccCcceecCCccccCC-cccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 137 NVCEIELFLGSHKLVRLPESICTLK-TLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~lp~~l~~~~-~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
.+..+.+.... ...++......+ +|+.|+++++.....+.....+++|+.|++ .....+ +.......+.|+.|
T Consensus 117 ~l~~L~l~~n~--i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~---l~~~~~~~~~L~~L 191 (394)
T COG4886 117 NLTSLDLDNNN--ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD---LPKLLSNLSNLNNL 191 (394)
T ss_pred ceeEEecCCcc--cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh---hhhhhhhhhhhhhe
Confidence 45666654332 566777666664 899999999976665446678999999999 776543 34444478999999
Q ss_pred EeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeece--EEeecCCCeeEEEEEEEec
Q 044491 215 SIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVS--YMFHELPPFTKVFIDIFYD 292 (460)
Q Consensus 215 ~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~--~~~~~~p~L~~l~l~~~~~ 292 (460)
.+.++....+....-....|+.|.+...... ......-...++..+.+.+..... -.+...+.++.+.+.-...
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~----~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSII----ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcce----ecchhhhhcccccccccCCceeeeccchhccccccceeccccccc
Confidence 9999875433222112234777777666310 001122234455555544443322 3445566666666632220
Q ss_pred CCccccccccHHHHhhcCcceeEEEEecc
Q 044491 293 DGWSWVQSGRAQRLLNSLTKAKFLALSAD 321 (460)
Q Consensus 293 ~~~~~~~~~~~~~~l~~l~~l~~L~l~~~ 321 (460)
..+.. +..+.+++.|++++.
T Consensus 268 --------~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 268 --------SSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred --------ccccc-ccccCccCEEeccCc
Confidence 11222 667788888888774
No 63
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=88.97 E-value=0.15 Score=52.13 Aligned_cols=45 Identities=36% Similarity=0.467 Sum_probs=39.9
Q ss_pred hccccCCCccccCCCChHHHHHHhcCCcchheeecccchhhhHhh
Q 044491 8 NEHESLSKEDRISQLPDGILCHILSFLPIKCALATCILSSRWKFV 52 (460)
Q Consensus 8 ~~~~~~~~~D~is~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~l 52 (460)
+..+.....|.|+.||-|+...||++|+.++++.++.+|+.|+.+
T Consensus 97 ~~~~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 97 NLLEPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred hhcccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 334556678999999999999999999999999999999999964
No 64
>PLN03150 hypothetical protein; Provisional
Probab=88.58 E-value=0.27 Score=51.62 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=36.5
Q ss_pred CcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeE-EEeccccceEEEEeecCccccCCceeEEEecCCcee
Q 044491 186 LKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINF-NISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLEL 263 (460)
Q Consensus 186 L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~-~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~ 263 (460)
++.|+| ...+. +.+..-+..+++|+.|+|.++...+...- --..++|+.|.+..+. +.+........+++|+.
T Consensus 420 v~~L~L~~n~L~--g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~---lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLR--GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS---FNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCcc--ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC---CCCCCchHHhcCCCCCE
Confidence 445555 44332 22333455566666666666654321111 1122456666665553 22222222334566666
Q ss_pred EEEeee
Q 044491 264 LNIHDF 269 (460)
Q Consensus 264 L~l~~~ 269 (460)
|+++++
T Consensus 495 L~Ls~N 500 (623)
T PLN03150 495 LNLNGN 500 (623)
T ss_pred EECcCC
Confidence 666654
No 65
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.93 E-value=0.067 Score=46.22 Aligned_cols=41 Identities=32% Similarity=0.387 Sum_probs=34.4
Q ss_pred cccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeecc
Q 044491 180 GLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLD 220 (460)
Q Consensus 180 ~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 220 (460)
...+++++.|.+ .|...++.++..+-...|+|++|+|++|.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 346778888888 88888888888888888999999999987
No 66
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.29 E-value=0.1 Score=49.80 Aligned_cols=41 Identities=17% Similarity=0.322 Sum_probs=29.2
Q ss_pred ccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEEC
Q 044491 156 SICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYP 196 (460)
Q Consensus 156 ~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~ 196 (460)
.+...++|..|+|+++...+.|...+++..|++|++ ...|.
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR 471 (565)
T ss_pred HHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc
Confidence 344557788888888866677677777778888888 55553
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=85.52 E-value=1.5 Score=43.00 Aligned_cols=12 Identities=33% Similarity=0.373 Sum_probs=7.9
Q ss_pred cccceEEEEeec
Q 044491 232 TTLKRLCLSFTN 243 (460)
Q Consensus 232 ~~L~~L~l~~~~ 243 (460)
++|+.|.+.+|.
T Consensus 156 sSLk~L~Is~c~ 167 (426)
T PRK15386 156 PSLKTLSLTGCS 167 (426)
T ss_pred CcccEEEecCCC
Confidence 367777776664
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.78 E-value=0.3 Score=42.31 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=23.5
Q ss_pred CCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeecc
Q 044491 337 FPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKKL 374 (460)
Q Consensus 337 ~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~~ 374 (460)
++.++.|.+ .|...++.++..+-+-.|+||.|+|++|+
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 334555555 55556666666666666777777777773
No 69
>PF13013 F-box-like_2: F-box-like domain
Probab=82.68 E-value=0.54 Score=36.64 Aligned_cols=30 Identities=20% Similarity=0.151 Sum_probs=27.5
Q ss_pred ccCCCChHHHHHHhcCCcchheeecccchh
Q 044491 18 RISQLPDGILCHILSFLPIKCALATCILSS 47 (460)
Q Consensus 18 ~is~LPd~iL~~Ils~L~~~d~~~~s~vsk 47 (460)
.+.+||+||+..|+.+-+..+...++..++
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 578899999999999999999988888887
No 70
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.57 E-value=0.58 Score=25.89 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=11.4
Q ss_pred CceeEEEE-EEeccCcccHHHH
Q 044491 338 PNVTCLAV-KVELFGWRLLPII 358 (460)
Q Consensus 338 ~~L~~L~L-~~~~~~~~~l~~~ 358 (460)
++|++|+| .|...++.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 45555555 5555555555444
No 71
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=80.96 E-value=2.1 Score=23.77 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=17.7
Q ss_pred ceeEEEE-EEeccCcccHHHHHhcCC
Q 044491 339 NVTCLAV-KVELFGWRLLPIILSSLP 363 (460)
Q Consensus 339 ~L~~L~L-~~~~~~~~~l~~~l~~~p 363 (460)
+||.|.| .....+...+..++.+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 3678888 444455556888888887
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.18 E-value=0.17 Score=45.99 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=48.1
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeecc--CCCcccCCCCcEEEE-E---EEECCCccHHHHhccCC
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKI--PPSGLCFRSLKVLTV-V---LEYPDNNLTERLFSICP 209 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~~l~~L~~L~L-~---~~~~~~~~l~~l~~~cp 209 (460)
++++.|.|.... ..-...+..|.+|+.|.|.-+.+.++ .....++|+|++|.| . |.-.+.+.=..++...|
T Consensus 41 p~lEVLsLSvNk---IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 41 PLLEVLSLSVNK---ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred ccceeEEeeccc---cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 477777775543 22223455788888888887644332 123457888888888 2 22222222346677788
Q ss_pred cccceEeeec
Q 044491 210 ALEDLSIGHL 219 (460)
Q Consensus 210 ~Le~L~L~~c 219 (460)
+|++|+=...
T Consensus 118 nLkKLDnv~V 127 (388)
T KOG2123|consen 118 NLKKLDNVPV 127 (388)
T ss_pred cchhccCccc
Confidence 8888864443
No 73
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=77.36 E-value=0.95 Score=40.86 Aligned_cols=68 Identities=19% Similarity=0.160 Sum_probs=29.0
Q ss_pred ecCCccccCCcccEEEeceeeeecc--CCCcccCCCCcEEEE-EEEECCCccH-HHHhccCCcccceEeeec
Q 044491 152 RLPESICTLKTLEVLKLYSDFVIKI--PPSGLCFRSLKVLTV-VLEYPDNNLT-ERLFSICPALEDLSIGHL 219 (460)
Q Consensus 152 ~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~~l~~L~~L~L-~~~~~~~~~l-~~l~~~cp~Le~L~L~~c 219 (460)
.++..+-.||+|++|+|+++....+ ......+++|+.|.+ .|....-... ..++.-.|+|..|+-..+
T Consensus 82 ~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 82 GLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 3444444455566666555532211 122234455555555 4444332222 233334444444444333
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=76.09 E-value=2.1 Score=22.55 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=11.6
Q ss_pred cccEEEeceeeeeccCC
Q 044491 162 TLEVLKLYSDFVIKIPP 178 (460)
Q Consensus 162 ~L~~L~L~~~~~~~~~~ 178 (460)
+|++|+|++|.....|+
T Consensus 1 ~L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPS 17 (22)
T ss_dssp TESEEEETSSEESEEGT
T ss_pred CccEEECCCCcCEeCCh
Confidence 57888888885554433
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=69.98 E-value=5.6 Score=36.46 Aligned_cols=39 Identities=21% Similarity=0.126 Sum_probs=19.1
Q ss_pred CCCCceeEEEE---EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 335 PKFPNVTCLAV---KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 335 ~~~~~L~~L~L---~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
..+.+|+.|+| .........+...+...|.|++|.+..|
T Consensus 211 ~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 211 FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 34455666666 1122223334555555556666666555
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=67.36 E-value=3.6 Score=20.12 Aligned_cols=12 Identities=25% Similarity=0.301 Sum_probs=7.4
Q ss_pred CcccEEEeceee
Q 044491 161 KTLEVLKLYSDF 172 (460)
Q Consensus 161 ~~L~~L~L~~~~ 172 (460)
++|+.|+|++|.
T Consensus 1 ~~L~~L~l~~n~ 12 (17)
T PF13504_consen 1 PNLRTLDLSNNR 12 (17)
T ss_dssp TT-SEEEETSS-
T ss_pred CccCEEECCCCC
Confidence 467788888774
No 77
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=64.33 E-value=2.5 Score=42.01 Aligned_cols=106 Identities=23% Similarity=0.231 Sum_probs=50.7
Q ss_pred cccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEEeccccc
Q 044491 157 ICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNISSTTLK 235 (460)
Q Consensus 157 l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~ 235 (460)
+..+.+|+.|++.++..........++++|+.|+| ...+.+-.++. .++.|+.|.+.++....+..+.. .+.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~~~~-l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLISDISGLES-LKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchhhheeccCcchhccCCcc-chhhh
Confidence 33455666666666644443121445666666666 44444323322 23336666666665443322221 34555
Q ss_pred eEEEEeecCccccCCceeEEEecCCceeEEEeeee
Q 044491 236 RLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFC 270 (460)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 270 (460)
.+.+.++....+... . ....++|+.+.+.+..
T Consensus 166 ~l~l~~n~i~~ie~~--~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 166 LLDLSYNRIVDIEND--E-LSELISLEELDLGGNS 197 (414)
T ss_pred cccCCcchhhhhhhh--h-hhhccchHHHhccCCc
Confidence 666655542111110 0 2344556666665543
No 78
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=64.13 E-value=0.19 Score=50.28 Aligned_cols=67 Identities=24% Similarity=0.336 Sum_probs=30.9
Q ss_pred eecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccC
Q 044491 151 VRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDD 221 (460)
Q Consensus 151 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 221 (460)
-++|..+..|..|..|.|..+..-..+....++..|+.|+| ...... +..-+..|| |+.|.+.+++.
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~---lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSH---LPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhc---CChhhhcCc-ceeEEEecCcc
Confidence 34444444455555555554433333344445555555555 433221 112223344 56666665544
No 79
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=63.50 E-value=0.26 Score=50.85 Aligned_cols=43 Identities=28% Similarity=0.275 Sum_probs=26.5
Q ss_pred CcccEEEeceeeeecc--CCCcccCCCCcEEEE-EEEECCCccHHH
Q 044491 161 KTLEVLKLYSDFVIKI--PPSGLCFRSLKVLTV-VLEYPDNNLTER 203 (460)
Q Consensus 161 ~~L~~L~L~~~~~~~~--~~~~~~l~~L~~L~L-~~~~~~~~~l~~ 203 (460)
++++.|++-.....+. |-...-|.+||.|.| +|......++..
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~ 129 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQE 129 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHH
Confidence 5566666655422221 233457899999999 998765444443
No 80
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=61.98 E-value=3.2 Score=41.26 Aligned_cols=81 Identities=21% Similarity=0.084 Sum_probs=47.6
Q ss_pred cccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeE-EEecccc
Q 044491 157 ICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINF-NISSTTL 234 (460)
Q Consensus 157 l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~-~i~~~~L 234 (460)
+..+++|++|+|+++..... .....++.|+.|++ +....+-..+.. ++.|+.|.+.++........ .....++
T Consensus 114 l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~~~~----l~~L~~l~l~~n~i~~ie~~~~~~~~~l 188 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDISGLES----LKSLKLLDLSYNRIVDIENDELSELISL 188 (414)
T ss_pred hhhhhcchheeccccccccc-cchhhccchhhheeccCcchhccCCcc----chhhhcccCCcchhhhhhhhhhhhccch
Confidence 45577788888877755444 44556666777777 666554333332 66777777777765433221 1223456
Q ss_pred ceEEEEee
Q 044491 235 KRLCLSFT 242 (460)
Q Consensus 235 ~~L~l~~~ 242 (460)
+.+.+...
T Consensus 189 ~~l~l~~n 196 (414)
T KOG0531|consen 189 EELDLGGN 196 (414)
T ss_pred HHHhccCC
Confidence 66666555
No 81
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=59.82 E-value=3.1 Score=40.06 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=36.0
Q ss_pred cCCcccEEEeceeeeeccC-CCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccC
Q 044491 159 TLKTLEVLKLYSDFVIKIP-PSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDD 221 (460)
Q Consensus 159 ~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 221 (460)
..++|+.|+|+++....+. ..+.....+++|.| ..... ..-..++.+...|+.|+|.++..
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~--~v~~~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE--FVSSGMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH--HHHHHhhhccccceeeeecCCee
Confidence 3467777777777554432 23446667777777 44432 11235566667777777777653
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=52.37 E-value=6.6 Score=20.95 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=7.6
Q ss_pred CCcccceEeeecc
Q 044491 208 CPALEDLSIGHLD 220 (460)
Q Consensus 208 cp~Le~L~L~~c~ 220 (460)
|++|++|+|.+|.
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 5778888887775
No 83
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=48.29 E-value=9.7 Score=29.01 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.7
Q ss_pred cccCCCChHHHHHHhcCCcchhee
Q 044491 17 DRISQLPDGILCHILSFLPIKCAL 40 (460)
Q Consensus 17 D~is~LPd~iL~~Ils~L~~~d~~ 40 (460)
..+..||.||-..||++|+-.|+.
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~ 93 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLK 93 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHH
Confidence 679999999999999999988764
No 84
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=40.86 E-value=16 Score=35.50 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=49.3
Q ss_pred cCCceeEEEeeeeece---EEeecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccC
Q 044491 258 TPNLELLNIHDFCMVS---YMFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVF 334 (460)
Q Consensus 258 ~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~ 334 (460)
.|+|+.|+++++.... ..++++..++++.+.-... . .--..++.++++|+.|.++++.+..+. +..+
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l-----~--~v~~~~f~~ls~L~tL~L~~N~it~~~---~~aF 342 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL-----E--FVSSGMFQGLSGLKTLSLYDNQITTVA---PGAF 342 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH-----H--HHHHHhhhccccceeeeecCCeeEEEe---cccc
Confidence 4666666666654422 2344555555555532210 0 112336778888888888886543322 1224
Q ss_pred CCCCceeEEEE----EEeccCcccHHHHHh
Q 044491 335 PKFPNVTCLAV----KVELFGWRLLPIILS 360 (460)
Q Consensus 335 ~~~~~L~~L~L----~~~~~~~~~l~~~l~ 360 (460)
.+...|..|.+ ++.+....++..-++
T Consensus 343 ~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr 372 (498)
T KOG4237|consen 343 QTLFSLSTLNLLSNPFNCNCRLAWLGEWLR 372 (498)
T ss_pred cccceeeeeehccCcccCccchHHHHHHHh
Confidence 55667777777 333333444554444
No 85
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=38.57 E-value=9 Score=35.91 Aligned_cols=39 Identities=31% Similarity=0.372 Sum_probs=34.2
Q ss_pred cCCCChHHHHHHhcCCcchheeecccchhhhHhhcccCc
Q 044491 19 ISQLPDGILCHILSFLPIKCALATCILSSRWKFVWTLLP 57 (460)
Q Consensus 19 is~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw~~~~ 57 (460)
+..+|+++++.|++++.-+++.++|.+|+|-..+-+..|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 457899999999999999999999999999987655555
No 86
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=36.12 E-value=9.3 Score=34.68 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=39.0
Q ss_pred cccCCCChHHHHHHhcCCc-chheeecccchhhh------HhhcccCcceEeecCCC
Q 044491 17 DRISQLPDGILCHILSFLP-IKCALATCILSSRW------KFVWTLLPNLCFDERLH 66 (460)
Q Consensus 17 D~is~LPd~iL~~Ils~L~-~~d~~~~s~vskrW------r~lw~~~~~l~~~~~~~ 66 (460)
=-+.+||.|++..|+.+|+ -+|++.++.+-..- |.+|+.+-.++|.+..+
T Consensus 200 ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi 256 (332)
T KOG3926|consen 200 LTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQI 256 (332)
T ss_pred CCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3588999999999999995 79999888764433 46788877777776554
No 87
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=30.45 E-value=7.1 Score=39.60 Aligned_cols=78 Identities=26% Similarity=0.233 Sum_probs=39.9
Q ss_pred CceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceE
Q 044491 137 NVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLS 215 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~ 215 (460)
.++-|-+.+.. ...+|..+....+|..|+.+.|.....++....+.+|+.|++ ...+.+ ....+. |-.|-+|+
T Consensus 144 pLkvli~sNNk--l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~--lp~El~--~LpLi~lD 217 (722)
T KOG0532|consen 144 PLKVLIVSNNK--LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED--LPEELC--SLPLIRLD 217 (722)
T ss_pred cceeEEEecCc--cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh--CCHHHh--CCceeeee
Confidence 45555443332 344555555556666666666655555555556666666666 444331 111222 33355666
Q ss_pred eeecc
Q 044491 216 IGHLD 220 (460)
Q Consensus 216 L~~c~ 220 (460)
+++++
T Consensus 218 fScNk 222 (722)
T KOG0532|consen 218 FSCNK 222 (722)
T ss_pred cccCc
Confidence 66554
No 88
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=27.89 E-value=11 Score=30.98 Aligned_cols=56 Identities=21% Similarity=0.196 Sum_probs=0.0
Q ss_pred ccEEEeceeeeeccCCCcc-cCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccC
Q 044491 163 LEVLKLYSDFVIKIPPSGL-CFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDD 221 (460)
Q Consensus 163 L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 221 (460)
|+..+|+++.+-+.|+.+. -||.++.|+| ...+.+ +-.-+...|.|+.|++.++..
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd---vPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD---VPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh---chHHHhhhHHhhhcccccCcc
No 89
>KOG3445 consensus Mitochondrial/chloroplast ribosomal protein 36a [Translation, ribosomal structure and biogenesis]
Probab=25.54 E-value=1.1e+02 Score=24.68 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=28.7
Q ss_pred CcccceEEEEeccCCc----HHHHH-HHHhhccCCCCCceEEe
Q 044491 422 CKVLNKVIIRCKETAS----KENLC-QKLDKLQRGSMTCEVEI 459 (460)
Q Consensus 422 a~~Le~l~i~~~~~~~----~~~~~-~~l~~~~r~s~~~~~~~ 459 (460)
.--|+++++.+.+++. +.+++ .+|..+.|.+|..+|.+
T Consensus 20 v~ql~rit~sfCnwggSSrGmR~Fle~~L~~~a~enP~v~i~v 62 (145)
T KOG3445|consen 20 VWQLRRITVSFCNWGGSSRGMREFLESELPDLARENPGVVIYV 62 (145)
T ss_pred hheeeEEEEEEecCCCccHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 3458999999988743 44554 47889999999988864
No 90
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=24.34 E-value=26 Score=27.76 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=23.6
Q ss_pred cCCcccEEEeceeeeeccC-CCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeee
Q 044491 159 TLKTLEVLKLYSDFVIKIP-PSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGH 218 (460)
Q Consensus 159 ~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~ 218 (460)
.|.+|+.+.+... ..... ..+.++++|+++.+ .. .. .--...+..|+.|+.+.+.+
T Consensus 10 ~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~--~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 10 NCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LT--SIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp T-TT--EEEETST---EE-TTTTTT-TT-SEEEESST-TS--CE-TTTTTT-TT-EEEEETS
T ss_pred CCCCCCEEEECCC-eeEeChhhccccccccccccccc-cc--ccceeeeecccccccccccc
Confidence 4567777777633 11111 33445667777776 31 11 11124456676677777744
No 91
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=20.57 E-value=53 Score=17.64 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=9.9
Q ss_pred CcccEEEeceeeeecc
Q 044491 161 KTLEVLKLYSDFVIKI 176 (460)
Q Consensus 161 ~~L~~L~L~~~~~~~~ 176 (460)
++|++|+|+++....+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4577777777754443
No 92
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=20.57 E-value=53 Score=17.64 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=9.9
Q ss_pred CcccEEEeceeeeecc
Q 044491 161 KTLEVLKLYSDFVIKI 176 (460)
Q Consensus 161 ~~L~~L~L~~~~~~~~ 176 (460)
++|++|+|+++....+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4577777777754443
Done!