Query 044491
Match_columns 460
No_of_seqs 170 out of 2235
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 06:00:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.9 9.1E-23 3.1E-27 211.0 7.6 340 20-373 14-413 (592)
2 2p1m_B Transport inhibitor res 99.8 2E-22 6.7E-27 208.6 3.1 37 16-52 3-40 (594)
3 2ast_B S-phase kinase-associat 99.8 2E-20 6.8E-25 179.4 -1.8 38 17-54 7-44 (336)
4 4fcg_A Uncharacterized protein 99.3 8.9E-12 3.1E-16 118.6 9.4 207 132-373 77-287 (328)
5 2p1m_B Transport inhibitor res 99.2 2.3E-12 8E-17 132.9 0.2 108 109-219 106-221 (594)
6 2z80_A TOLL-like receptor 2, v 99.1 1E-10 3.4E-15 112.5 9.1 262 136-421 52-329 (353)
7 4fmz_A Internalin; leucine ric 99.1 1.7E-11 5.7E-16 117.6 3.4 58 157-219 84-142 (347)
8 4fmz_A Internalin; leucine ric 99.0 2.3E-11 8E-16 116.6 0.1 228 109-373 67-297 (347)
9 1o6v_A Internalin A; bacterial 99.0 9.6E-11 3.3E-15 117.1 4.5 248 136-434 68-320 (466)
10 1o6v_A Internalin A; bacterial 99.0 1.6E-10 5.4E-15 115.5 5.8 210 136-373 90-319 (466)
11 3ogk_B Coronatine-insensitive 99.0 2.2E-10 7.6E-15 118.0 5.9 264 155-432 264-547 (592)
12 2ast_B S-phase kinase-associat 99.0 9E-12 3.1E-16 118.9 -6.5 60 161-221 70-130 (336)
13 3o6n_A APL1; leucine-rich repe 98.9 3.6E-10 1.2E-14 110.1 4.1 62 306-373 243-305 (390)
14 4fcg_A Uncharacterized protein 98.9 6.5E-10 2.2E-14 105.6 5.7 227 160-432 80-310 (328)
15 2z66_A Variable lymphocyte rec 98.9 1.8E-10 6.1E-15 108.4 1.5 249 150-420 19-275 (306)
16 1ogq_A PGIP-2, polygalacturona 98.9 5.9E-10 2E-14 105.2 3.5 218 137-373 51-278 (313)
17 3oja_B Anopheles plasmodium-re 98.9 1.5E-09 5E-14 112.0 6.3 101 259-373 232-334 (597)
18 2z63_A TOLL-like receptor 4, v 98.8 1.6E-09 5.3E-14 111.1 5.4 83 153-242 274-357 (570)
19 2z63_A TOLL-like receptor 4, v 98.8 4.8E-09 1.6E-13 107.4 8.9 253 137-421 283-547 (570)
20 2z81_A CD282 antigen, TOLL-lik 98.8 3.8E-09 1.3E-13 107.7 8.0 227 136-374 26-262 (549)
21 3t6q_A CD180 antigen; protein- 98.8 3.8E-11 1.3E-15 124.1 -7.2 62 157-220 274-336 (606)
22 1z7x_W Ribonuclease inhibitor; 98.8 3.4E-11 1.2E-15 120.1 -7.7 257 109-373 4-294 (461)
23 3o6n_A APL1; leucine-rich repe 98.8 3.8E-09 1.3E-13 102.9 7.0 232 137-404 94-348 (390)
24 1h6u_A Internalin H; cell adhe 98.8 1.2E-09 4E-14 102.9 3.1 121 136-270 41-162 (308)
25 3vq2_A TLR4, TOLL-like recepto 98.8 2.3E-10 8E-15 118.2 -2.6 139 136-287 285-431 (606)
26 3o53_A Protein LRIM1, AGAP0063 98.8 4.6E-10 1.6E-14 106.2 -0.6 60 306-373 164-224 (317)
27 3rgz_A Protein brassinosteroid 98.8 1.3E-09 4.4E-14 115.8 2.7 144 136-288 178-326 (768)
28 2id5_A Lingo-1, leucine rich r 98.8 1.2E-09 4.1E-14 109.5 2.3 63 306-373 243-306 (477)
29 3v47_A TOLL-like receptor 5B a 98.8 1.1E-09 3.7E-14 109.0 1.9 83 137-221 80-166 (455)
30 3oja_A Leucine-rich immune mol 98.8 7.3E-10 2.5E-14 111.2 0.7 102 258-373 119-224 (487)
31 3zyi_A Leucine-rich repeat-con 98.8 5.5E-10 1.9E-14 111.2 -0.4 221 136-373 75-300 (452)
32 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 2.7E-09 9.1E-14 71.5 2.2 39 16-54 6-44 (53)
33 2id5_A Lingo-1, leucine rich r 98.7 1.8E-09 6.2E-14 108.1 1.9 221 136-374 104-331 (477)
34 1z7x_W Ribonuclease inhibitor; 98.7 4.8E-11 1.6E-15 119.0 -10.0 234 137-373 86-351 (461)
35 3oja_A Leucine-rich immune mol 98.7 6.9E-10 2.4E-14 111.4 -1.8 206 137-373 35-247 (487)
36 4ecn_A Leucine-rich repeat pro 98.7 8.9E-10 3E-14 117.3 -1.7 220 136-373 548-786 (876)
37 3bz5_A Internalin-J, INLJ; leu 98.7 6.2E-09 2.1E-13 103.5 4.2 58 157-221 60-118 (457)
38 3j0a_A TOLL-like receptor 5; m 98.7 3.7E-08 1.3E-12 105.7 10.5 104 136-242 266-372 (844)
39 2z80_A TOLL-like receptor 2, v 98.7 2.9E-08 9.8E-13 95.3 8.5 114 150-269 43-159 (353)
40 3zyj_A Leucine-rich repeat-con 98.7 1.1E-09 3.6E-14 108.7 -1.7 219 137-373 65-289 (440)
41 4eco_A Uncharacterized protein 98.7 3.3E-09 1.1E-13 110.1 1.7 221 136-373 206-467 (636)
42 3o53_A Protein LRIM1, AGAP0063 98.7 7.7E-10 2.6E-14 104.6 -3.1 148 125-287 21-176 (317)
43 3oja_B Anopheles plasmodium-re 98.7 9.8E-10 3.3E-14 113.3 -2.6 213 136-373 75-311 (597)
44 2ca6_A RAN GTPase-activating p 98.7 2.9E-10 9.8E-15 110.7 -6.4 85 136-220 32-133 (386)
45 3vq2_A TLR4, TOLL-like recepto 98.7 3.8E-09 1.3E-13 109.0 1.6 123 206-345 282-406 (606)
46 3t6q_A CD180 antigen; protein- 98.7 6.6E-09 2.3E-13 107.3 2.9 223 136-373 278-510 (606)
47 3g06_A SSPH2 (leucine-rich rep 98.7 1.7E-08 5.9E-13 103.7 5.9 28 161-191 81-108 (622)
48 3zyj_A Leucine-rich repeat-con 98.6 2E-09 6.8E-14 106.7 -1.3 243 150-421 55-307 (440)
49 3rgz_A Protein brassinosteroid 98.6 2.8E-09 9.7E-14 113.2 -0.3 63 306-373 313-378 (768)
50 3zyi_A Leucine-rich repeat-con 98.6 2.3E-09 7.7E-14 106.7 -1.0 243 150-421 66-318 (452)
51 4eco_A Uncharacterized protein 98.6 1.4E-09 4.9E-14 112.9 -2.8 224 136-373 305-546 (636)
52 1h6u_A Internalin H; cell adhe 98.6 1.2E-08 4.1E-13 95.9 3.8 186 159-373 39-227 (308)
53 1xku_A Decorin; proteoglycan, 98.6 1.8E-09 6.1E-14 102.7 -2.2 217 136-374 76-304 (330)
54 1ozn_A Reticulon 4 receptor; N 98.6 4.9E-09 1.7E-13 97.4 0.7 62 307-373 173-235 (285)
55 1xku_A Decorin; proteoglycan, 98.6 1.5E-08 5.2E-13 96.2 4.0 217 136-373 52-273 (330)
56 3j0a_A TOLL-like receptor 5; m 98.6 3E-08 1E-12 106.4 6.5 100 137-243 291-392 (844)
57 2ca6_A RAN GTPase-activating p 98.6 1.6E-10 5.6E-15 112.4 -10.8 86 136-221 60-171 (386)
58 3bz5_A Internalin-J, INLJ; leu 98.6 4.9E-09 1.7E-13 104.3 -0.4 118 156-288 37-156 (457)
59 2ft3_A Biglycan; proteoglycan, 98.6 2E-09 6.7E-14 102.5 -3.2 216 136-373 78-304 (332)
60 4ecn_A Leucine-rich repeat pro 98.6 7.8E-09 2.7E-13 110.1 1.0 223 136-373 448-707 (876)
61 2ft3_A Biglycan; proteoglycan, 98.6 4.1E-09 1.4E-13 100.3 -1.1 270 136-431 54-328 (332)
62 3v47_A TOLL-like receptor 5B a 98.6 2.5E-09 8.7E-14 106.3 -2.7 144 259-422 275-425 (455)
63 2z7x_B TOLL-like receptor 1, v 98.6 1.1E-07 3.7E-12 96.2 9.2 122 136-270 21-149 (520)
64 3g06_A SSPH2 (leucine-rich rep 98.6 6.3E-08 2.2E-12 99.5 7.4 254 135-447 39-309 (622)
65 1ogq_A PGIP-2, polygalacturona 98.5 7.9E-09 2.7E-13 97.4 -0.2 243 109-373 51-301 (313)
66 3a79_B TLR6, VLRB.59, TOLL-lik 98.5 3.4E-07 1.1E-11 93.6 11.6 63 308-373 350-413 (562)
67 2z7x_B TOLL-like receptor 1, v 98.5 9.3E-08 3.2E-12 96.7 6.9 77 136-221 69-150 (520)
68 2z81_A CD282 antigen, TOLL-lik 98.5 1.2E-07 4.3E-12 96.4 7.8 115 150-270 17-134 (549)
69 2z66_A Variable lymphocyte rec 98.5 8.5E-10 2.9E-14 103.7 -8.0 62 307-373 195-258 (306)
70 1h6t_A Internalin B; cell adhe 98.5 2.7E-08 9.3E-13 92.7 2.1 80 136-223 46-126 (291)
71 1ozn_A Reticulon 4 receptor; N 98.5 1.3E-08 4.3E-13 94.6 -1.0 193 136-345 32-232 (285)
72 2z62_A TOLL-like receptor 4, v 98.4 2.3E-08 7.7E-13 92.4 -0.1 82 137-222 29-113 (276)
73 2o6q_A Variable lymphocyte rec 98.4 3.6E-08 1.2E-12 90.8 0.5 59 161-221 37-97 (270)
74 1wwl_A Monocyte differentiatio 98.4 8.6E-09 2.9E-13 97.2 -4.6 62 305-373 222-284 (312)
75 2ra8_A Uncharacterized protein 98.4 9.7E-08 3.3E-12 91.4 2.7 60 182-243 137-204 (362)
76 3a79_B TLR6, VLRB.59, TOLL-lik 98.4 4E-07 1.4E-11 93.0 7.0 76 137-221 101-181 (562)
77 4ezg_A Putative uncharacterize 98.4 3.3E-07 1.1E-11 80.0 5.2 58 307-373 132-191 (197)
78 1h6t_A Internalin B; cell adhe 98.4 1.3E-07 4.3E-12 88.1 2.6 79 159-243 44-123 (291)
79 1wwl_A Monocyte differentiatio 98.3 1.1E-08 3.7E-13 96.4 -4.8 56 308-373 250-306 (312)
80 2z62_A TOLL-like receptor 4, v 98.3 7.4E-08 2.5E-12 88.9 0.8 131 150-287 19-156 (276)
81 1m9s_A Internalin B; cell inva 98.3 4.9E-08 1.7E-12 100.2 -0.6 160 136-345 43-204 (605)
82 1p9a_G Platelet glycoprotein I 98.3 1.2E-07 4E-12 88.3 2.0 16 205-220 51-66 (290)
83 1ziw_A TOLL-like receptor 3; i 98.3 8.1E-08 2.8E-12 100.6 0.8 33 394-432 535-569 (680)
84 2xwt_C Thyrotropin receptor; s 98.3 5.4E-07 1.8E-11 81.1 6.2 55 162-218 32-89 (239)
85 2xwt_C Thyrotropin receptor; s 98.3 2.2E-07 7.6E-12 83.7 3.2 85 136-224 31-120 (239)
86 3rfs_A Internalin B, repeat mo 98.3 6.7E-08 2.3E-12 89.0 -0.5 81 136-222 41-122 (272)
87 4glp_A Monocyte differentiatio 98.3 1.5E-08 5.2E-13 95.3 -5.3 108 110-221 66-181 (310)
88 3goz_A Leucine-rich repeat-con 98.2 6.6E-09 2.2E-13 100.1 -9.3 71 303-373 187-263 (362)
89 2ell_A Acidic leucine-rich nuc 98.2 9.3E-08 3.2E-12 81.1 -1.1 105 136-243 24-131 (168)
90 3rfs_A Internalin B, repeat mo 98.2 6.3E-08 2.2E-12 89.2 -2.8 55 307-373 177-232 (272)
91 1xeu_A Internalin C; cellular 98.2 4E-07 1.4E-11 83.4 2.5 142 157-345 37-179 (263)
92 2o6q_A Variable lymphocyte rec 98.2 2.4E-07 8.1E-12 85.2 0.8 83 136-222 37-122 (270)
93 1m9s_A Internalin B; cell inva 98.2 1.7E-07 5.8E-12 96.2 -0.3 100 135-243 64-164 (605)
94 1ziw_A TOLL-like receptor 3; i 98.2 3.6E-07 1.2E-11 95.6 1.4 84 136-220 353-441 (680)
95 4ezg_A Putative uncharacterize 98.2 2E-07 6.8E-12 81.4 -0.6 79 137-221 45-124 (197)
96 3cvr_A Invasion plasmid antige 98.1 2.2E-06 7.5E-11 87.0 6.1 114 135-271 58-172 (571)
97 1jl5_A Outer protein YOPM; leu 98.1 5.1E-07 1.8E-11 89.5 1.4 191 137-373 174-367 (454)
98 1jl5_A Outer protein YOPM; leu 98.1 6.4E-07 2.2E-11 88.9 1.9 133 136-287 131-264 (454)
99 3goz_A Leucine-rich repeat-con 98.1 8E-08 2.7E-12 92.5 -5.0 222 154-406 15-264 (362)
100 1p9a_G Platelet glycoprotein I 98.1 3.5E-07 1.2E-11 85.1 -1.0 78 161-242 31-110 (290)
101 2je0_A Acidic leucine-rich nuc 98.1 1.1E-07 3.8E-12 78.9 -4.2 104 136-242 17-123 (149)
102 2ell_A Acidic leucine-rich nuc 98.0 1.1E-06 3.7E-11 74.4 0.9 56 161-220 24-82 (168)
103 2e31_A FBS1, F-box only protei 98.0 2.3E-06 7.8E-11 78.2 2.5 37 17-53 49-86 (297)
104 2je0_A Acidic leucine-rich nuc 98.0 5.8E-07 2E-11 74.4 -1.4 58 160-221 16-76 (149)
105 1ds9_A Outer arm dynein; leuci 97.9 9.8E-07 3.3E-11 77.0 -0.5 68 151-222 38-106 (198)
106 3m19_A Variable lymphocyte rec 97.9 1.5E-06 5.2E-11 78.8 0.6 68 151-222 27-96 (251)
107 3e4g_A ATP synthase subunit S, 97.9 1.9E-06 6.3E-11 72.8 0.5 92 151-243 51-150 (176)
108 4glp_A Monocyte differentiatio 97.9 3.3E-06 1.1E-10 79.2 2.0 178 136-323 117-306 (310)
109 4ay9_X Follicle-stimulating ho 97.8 1E-05 3.4E-10 77.3 4.8 218 136-373 30-256 (350)
110 2ra8_A Uncharacterized protein 97.8 1.1E-05 3.7E-10 77.2 4.9 121 94-218 93-228 (362)
111 3m19_A Variable lymphocyte rec 97.8 1.9E-06 6.4E-11 78.2 -1.2 102 137-242 36-141 (251)
112 3l2o_B F-box only protein 4; s 97.8 3.5E-06 1.2E-10 76.1 -0.1 35 18-52 4-38 (312)
113 4g8a_A TOLL-like receptor 4; l 97.8 2E-05 6.7E-10 81.4 5.4 130 136-271 52-185 (635)
114 1xeu_A Internalin C; cellular 97.7 1E-05 3.6E-10 73.8 2.2 144 136-324 41-185 (263)
115 4g8a_A TOLL-like receptor 4; l 97.7 3.2E-06 1.1E-10 87.4 -1.5 106 306-423 489-597 (635)
116 3e6j_A Variable lymphocyte rec 97.7 4.8E-06 1.6E-10 74.4 -0.8 62 157-220 60-123 (229)
117 1a9n_A U2A', U2A'; complex (nu 97.7 1.1E-05 3.7E-10 68.7 1.5 58 158-220 16-75 (176)
118 2v70_A SLIT-2, SLIT homolog 2 97.6 5.8E-06 2E-10 73.4 -0.6 64 157-222 53-118 (220)
119 2ovr_B FBW7, F-BOX/WD repeat p 97.6 2E-05 7E-10 77.5 2.6 49 4-52 4-52 (445)
120 3e6j_A Variable lymphocyte rec 97.6 9.8E-06 3.4E-10 72.3 0.0 90 150-243 31-123 (229)
121 2v9t_B SLIT homolog 2 protein 97.6 9.8E-06 3.3E-10 71.9 -0.2 59 161-221 32-92 (220)
122 1a9n_A U2A', U2A'; complex (nu 97.5 2.6E-06 8.9E-11 72.7 -4.1 81 137-222 20-101 (176)
123 3v7d_B Cell division control p 97.5 1.4E-05 4.7E-10 79.1 0.4 44 12-55 8-51 (464)
124 4ay9_X Follicle-stimulating ho 97.5 0.00011 3.8E-09 70.0 6.7 113 150-269 21-138 (350)
125 2v9t_B SLIT homolog 2 protein 97.5 1.2E-05 4.1E-10 71.3 -0.3 84 136-223 32-118 (220)
126 3cvr_A Invasion plasmid antige 97.5 7.1E-05 2.4E-09 76.0 4.6 112 136-271 80-192 (571)
127 2o6s_A Variable lymphocyte rec 97.5 1.4E-05 4.7E-10 70.1 -0.6 60 159-220 50-111 (208)
128 1ds9_A Outer arm dynein; leuci 97.5 1.8E-05 6.1E-10 68.8 0.2 38 180-221 44-82 (198)
129 2o6s_A Variable lymphocyte rec 97.4 2.4E-05 8.2E-10 68.5 -0.1 89 150-242 19-110 (208)
130 3e4g_A ATP synthase subunit S, 97.4 0.00028 9.7E-09 59.4 6.5 59 312-373 62-124 (176)
131 2xot_A Amphoterin-induced prot 97.4 3.3E-05 1.1E-09 74.0 0.5 67 151-221 31-100 (361)
132 1dce_A Protein (RAB geranylger 97.3 2.5E-05 8.6E-10 79.4 -1.1 80 137-223 442-522 (567)
133 2xot_A Amphoterin-induced prot 97.3 4.6E-05 1.6E-09 73.0 0.6 132 136-271 39-175 (361)
134 1p22_A F-BOX/WD-repeat protein 97.3 4.5E-05 1.5E-09 74.9 0.2 40 13-52 5-48 (435)
135 1w8a_A SLIT protein; signaling 97.2 3.2E-05 1.1E-09 66.9 -1.2 69 150-222 20-91 (192)
136 2v70_A SLIT-2, SLIT homolog 2 97.2 3.7E-05 1.3E-09 68.1 -0.9 89 150-242 23-115 (220)
137 3un9_A NLR family member X1; l 97.1 5.3E-06 1.8E-10 79.8 -7.7 71 303-373 175-249 (372)
138 1dce_A Protein (RAB geranylger 97.1 7.3E-05 2.5E-09 76.0 0.1 32 185-220 442-474 (567)
139 2wfh_A SLIT homolog 2 protein 97.1 5.4E-05 1.8E-09 65.5 -1.3 59 161-221 31-90 (193)
140 2o6r_A Variable lymphocyte rec 97.0 0.00011 3.7E-09 62.5 -0.2 59 161-221 28-88 (177)
141 2wfh_A SLIT homolog 2 protein 96.8 0.00022 7.4E-09 61.6 0.4 83 136-222 31-115 (193)
142 2o6r_A Variable lymphocyte rec 96.8 0.00032 1.1E-08 59.5 1.0 83 136-222 28-113 (177)
143 1w8a_A SLIT protein; signaling 96.6 0.00032 1.1E-08 60.5 -0.3 82 137-222 30-115 (192)
144 3sb4_A Hypothetical leucine ri 96.5 0.0028 9.5E-08 59.6 6.0 59 306-372 245-306 (329)
145 4b8c_D Glucose-repressible alc 96.5 0.00013 4.3E-09 76.7 -4.1 108 155-269 218-326 (727)
146 4b8c_D Glucose-repressible alc 96.3 0.00019 6.6E-09 75.2 -3.7 103 136-243 224-327 (727)
147 2r9u_A Variable lymphocyte rec 96.2 0.0024 8.3E-08 53.9 3.1 59 161-221 33-93 (174)
148 3g39_A Variable lymphocyte rec 96.2 0.0023 8E-08 53.8 2.9 59 161-221 30-90 (170)
149 2r9u_A Variable lymphocyte rec 96.1 0.0015 5E-08 55.3 1.4 82 136-221 33-117 (174)
150 3g39_A Variable lymphocyte rec 96.1 0.0016 5.6E-08 54.7 1.4 82 136-221 30-114 (170)
151 4fdw_A Leucine rich hypothetic 95.9 0.0011 3.8E-08 64.2 -0.4 57 158-218 177-235 (401)
152 2ifg_A High affinity nerve gro 95.9 0.0018 6.2E-08 61.3 1.0 66 153-221 24-92 (347)
153 1io0_A Tropomodulin; LRR prote 95.4 0.0045 1.5E-07 52.8 1.6 19 355-373 143-161 (185)
154 4fdw_A Leucine rich hypothetic 94.4 0.0042 1.4E-07 60.1 -1.6 60 156-220 130-191 (401)
155 3un9_A NLR family member X1; l 93.5 0.014 4.8E-07 55.7 0.1 138 232-373 72-221 (372)
156 2ifg_A High affinity nerve gro 93.0 0.043 1.5E-06 51.6 2.7 80 137-221 32-115 (347)
157 1io0_A Tropomodulin; LRR prote 92.7 0.094 3.2E-06 44.4 4.3 126 301-433 26-161 (185)
158 3rw6_A Nuclear RNA export fact 90.0 0.034 1.2E-06 50.2 -1.5 78 137-215 171-257 (267)
159 4fs7_A Uncharacterized protein 89.8 0.015 5.3E-07 55.9 -4.3 57 307-371 293-351 (394)
160 3sb4_A Hypothetical leucine ri 87.8 0.19 6.4E-06 46.8 1.8 32 160-191 225-257 (329)
161 3rw6_A Nuclear RNA export fact 85.9 0.17 5.9E-06 45.5 0.4 59 160-220 169-231 (267)
162 4gt6_A Cell surface protein; l 79.5 3.8 0.00013 38.9 7.2 57 307-371 284-342 (394)
163 1pgv_A TMD-1, tropomodulin TMD 68.9 4.5 0.00015 34.3 4.1 126 301-434 31-168 (197)
164 4gt6_A Cell surface protein; l 47.7 12 0.00043 35.2 3.6 79 158-242 285-367 (394)
165 3rfe_A Platelet glycoprotein I 46.0 9.1 0.00031 29.8 1.9 42 161-202 31-74 (130)
166 4fs7_A Uncharacterized protein 37.3 13 0.00043 35.2 1.8 80 157-242 293-376 (394)
167 4h09_A Hypothetical leucine ri 33.5 17 0.00057 34.0 2.0 57 158-218 260-319 (379)
168 1s3a_A NADH-ubiquinone oxidore 26.7 34 0.0012 25.2 2.2 36 424-459 18-58 (102)
169 4h09_A Hypothetical leucine ri 24.1 32 0.0011 32.0 2.1 56 158-217 214-271 (379)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=9.1e-23 Score=211.02 Aligned_cols=340 Identities=12% Similarity=0.092 Sum_probs=167.0
Q ss_pred CCCChHHHHHHhcCC-cchheeecccchhhhHhhcccCc-ceEeecCCC-Cccc----cCCccccccc-----cCCcccC
Q 044491 20 SQLPDGILCHILSFL-PIKCALATCILSSRWKFVWTLLP-NLCFDERLH-MRPV----YGQHMGYIFR-----KDGFCFS 87 (460)
Q Consensus 20 s~LPd~iL~~Ils~L-~~~d~~~~s~vskrWr~lw~~~~-~l~~~~~~~-~~~~----~~~~~~~~~~-----~~~~~~~ 87 (460)
++||||+|.+||+|| +.+|+++++.|||||++++...+ .+.+..... .++. +.. ...+-- ..++-..
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~ 92 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPN-LRSLKLKGKPRAAMFNLI 92 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTT-CSEEEEECSCGGGGGTCS
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCC-CeEEEecCCcchhhcccc
Confidence 389999999999999 89999999999999998853322 122111000 0000 000 000000 0000000
Q ss_pred CCCCc-hHHHHHHHhhccCCCCcccEEEEEecCCCCcchhhHHHHHHHhcCceEEEEEecc-CcceecCCccccCCcccE
Q 044491 88 EDPNP-VFENFVTRVLHLTNPTAIGKFSLDRWALSDLTRFRSWVDSIIMRNVCEIELFLGS-HKLVRLPESICTLKTLEV 165 (460)
Q Consensus 88 ~~~~~-~~~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~-~~~~~lp~~l~~~~~L~~ 165 (460)
+.... .....+..+.... +.++.+.+.... -.+....|+......++++|++..+. .....++.....|++|++
T Consensus 93 ~~~~~~~~~~~l~~l~~~~--~~L~~L~L~~~~--i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~ 168 (592)
T 3ogk_B 93 PENWGGYVTPWVTEISNNL--RQLKSVHFRRMI--VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKT 168 (592)
T ss_dssp CTTSCCBCHHHHHHHHHHC--TTCCEEEEESCB--CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSE
T ss_pred cccccccchHHHHHHHhhC--CCCCeEEeeccE--ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCE
Confidence 00000 0111122111111 225566555331 11223344444433347777775432 112223333346677777
Q ss_pred EEeceeeeeccCC-----CcccCCCCcEEEE-EEEEC--CCccHHHHhccCCcccceEeeeccCCCceeEEEeccccceE
Q 044491 166 LKLYSDFVIKIPP-----SGLCFRSLKVLTV-VLEYP--DNNLTERLFSICPALEDLSIGHLDDKSLINFNISSTTLKRL 237 (460)
Q Consensus 166 L~L~~~~~~~~~~-----~~~~l~~L~~L~L-~~~~~--~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L 237 (460)
|+|++|...+... ....+++|++|+| .+.+. +...+..++..||+|++|.+.+|...++...-...++|+.|
T Consensus 169 L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L 248 (592)
T 3ogk_B 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248 (592)
T ss_dssp EECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEE
T ss_pred EECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhh
Confidence 7777774332211 1235677777777 55553 23456677777888888888877543322111122445555
Q ss_pred EEEeecCc-c----------------------ccCCceeEEEecCCceeEEEeeeeece----EEeecCCCeeEEEEEEE
Q 044491 238 CLSFTNGV-A----------------------YSNNWHKVMIATPNLELLNIHDFCMVS----YMFHELPPFTKVFIDIF 290 (460)
Q Consensus 238 ~l~~~~~~-~----------------------~~~~~~~~~~~~p~L~~L~l~~~~~~~----~~~~~~p~L~~l~l~~~ 290 (460)
.+..+... . .......+...+++|++|+++++.... ..+..+++|+.+.+...
T Consensus 249 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~ 328 (592)
T 3ogk_B 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV 328 (592)
T ss_dssp EECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred cccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc
Confidence 54422100 0 000111112246678888887765311 12356777887777511
Q ss_pred ecCCccccccccHHHHhhcCcceeEEEEec-----------cchhhhhhhccccCCCCCceeEEEEEEeccCcccHHHHH
Q 044491 291 YDDGWSWVQSGRAQRLLNSLTKAKFLALSA-----------DTVYALDKIYKDVFPKFPNVTCLAVKVELFGWRLLPIIL 359 (460)
Q Consensus 291 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~-----------~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~~l 359 (460)
.....+..++..+++|++|.++. ..+..... ......+++|++|++.+...+..++..+.
T Consensus 329 -------~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~--~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 329 -------IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL--IALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp -------GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH--HHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred -------cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH--HHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 11134555566777777777772 11111100 00122356677777766556666666666
Q ss_pred hcCCCCCeEEEeec
Q 044491 360 SSLPNLEEFVFEKK 373 (460)
Q Consensus 360 ~~~p~L~~L~I~~~ 373 (460)
.+||+|++|++.++
T Consensus 400 ~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 400 TYLKNLCDFRLVLL 413 (592)
T ss_dssp HHCCSCCEEEEEEC
T ss_pred hhCCCCcEEEEeec
Confidence 66777777777654
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=2e-22 Score=208.60 Aligned_cols=37 Identities=19% Similarity=0.397 Sum_probs=29.4
Q ss_pred ccccCCCChHHHHHHhcCCc-chheeecccchhhhHhh
Q 044491 16 EDRISQLPDGILCHILSFLP-IKCALATCILSSRWKFV 52 (460)
Q Consensus 16 ~D~is~LPd~iL~~Ils~L~-~~d~~~~s~vskrWr~l 52 (460)
.|+|++||||||.+||+||| .+|+++++.|||||+++
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 58999999999999999999 99999999999999987
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=2e-20 Score=179.42 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=35.2
Q ss_pred cccCCCChHHHHHHhcCCcchheeecccchhhhHhhcc
Q 044491 17 DRISQLPDGILCHILSFLPIKCALATCILSSRWKFVWT 54 (460)
Q Consensus 17 D~is~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw~ 54 (460)
..|++||||++.+||++|+.+|+++++.|||+|+.+..
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHT
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 35799999999999999999999999999999999863
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.27 E-value=8.9e-12 Score=118.58 Aligned_cols=207 Identities=16% Similarity=0.115 Sum_probs=124.9
Q ss_pred HHHhcCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCc
Q 044491 132 SIIMRNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPA 210 (460)
Q Consensus 132 ~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~ 210 (460)
.....++++|++.... ...+|..++.+++|++|+|+++.....|..+..+++|++|+| ++.+. .+..-+..+++
T Consensus 77 ~~~~~~l~~L~L~~n~--l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~ 151 (328)
T 4fcg_A 77 DATQPGRVALELRSVP--LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR---ALPASIASLNR 151 (328)
T ss_dssp HHTSTTCCEEEEESSC--CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC---CCCGGGGGCTT
T ss_pred cccccceeEEEccCCC--chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc---cCcHHHhcCcC
Confidence 3334689999997765 347888888999999999999976666666788999999999 76654 34445778999
Q ss_pred ccceEeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeece--EEeecCCCeeEEEEE
Q 044491 211 LEDLSIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVS--YMFHELPPFTKVFID 288 (460)
Q Consensus 211 Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~--~~~~~~p~L~~l~l~ 288 (460)
|+.|++.+|...+.....+ ....+ .......++|+.|+++++.... ..+..+++|+.+++.
T Consensus 152 L~~L~L~~n~~~~~~p~~~-----~~~~~------------~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPL-----ASTDA------------SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIR 214 (328)
T ss_dssp CCEEEEEEETTCCCCCSCS-----EEEC-------------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEE
T ss_pred CCEEECCCCCCccccChhH-----hhccc------------hhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEcc
Confidence 9999999986432111000 00000 0001234455555554443211 123445555555553
Q ss_pred EEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCe
Q 044491 289 IFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEE 367 (460)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~ 367 (460)
.... ..+...+..+++|+.|.++.+.... ..+..+..+++|+.|+| .|.... .++..+.++++|+.
T Consensus 215 ~N~l--------~~l~~~l~~l~~L~~L~Ls~n~~~~---~~p~~~~~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 215 NSPL--------SALGPAIHHLPKLEELDLRGCTALR---NYPPIFGGRAPLKRLILKDCSNLL--TLPLDIHRLTQLEK 281 (328)
T ss_dssp SSCC--------CCCCGGGGGCTTCCEEECTTCTTCC---BCCCCTTCCCCCCEEECTTCTTCC--BCCTTGGGCTTCCE
T ss_pred CCCC--------CcCchhhccCCCCCEEECcCCcchh---hhHHHhcCCCCCCEEECCCCCchh--hcchhhhcCCCCCE
Confidence 2220 1122235677888888887743321 11223556778888888 543322 23444677888888
Q ss_pred EEEeec
Q 044491 368 FVFEKK 373 (460)
Q Consensus 368 L~I~~~ 373 (460)
|+|.+|
T Consensus 282 L~L~~n 287 (328)
T 4fcg_A 282 LDLRGC 287 (328)
T ss_dssp EECTTC
T ss_pred EeCCCC
Confidence 888886
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.18 E-value=2.3e-12 Score=132.88 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=62.9
Q ss_pred cccEEEEEecCCCCcchhhHHHHHHHhcCceEEEEEecc-CcceecCCccccCCcccEEEeceeeeeccC-----CCccc
Q 044491 109 AIGKFSLDRWALSDLTRFRSWVDSIIMRNVCEIELFLGS-HKLVRLPESICTLKTLEVLKLYSDFVIKIP-----PSGLC 182 (460)
Q Consensus 109 ~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~-~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~-----~~~~~ 182 (460)
.++.+.+.... .....+..... ..+++++|++..+. .....++.....|++|++|+|++|...+.. .....
T Consensus 106 ~L~~L~L~~~~-~~~~~~~~l~~--~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 106 WLEEIRLKRMV-VTDDCLELIAK--SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TCCEEEEESCB-CCHHHHHHHHH--HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCeEEeeCcE-EcHHHHHHHHH--hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 47777777543 22222222111 13578888886552 212224444456788888888887533221 11225
Q ss_pred CCCCcEEEE-EEE-ECCCccHHHHhccCCcccceEeeec
Q 044491 183 FRSLKVLTV-VLE-YPDNNLTERLFSICPALEDLSIGHL 219 (460)
Q Consensus 183 l~~L~~L~L-~~~-~~~~~~l~~l~~~cp~Le~L~L~~c 219 (460)
+++|++|+| .+. ..++..+..++..||+|+.|.+.+|
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 778888888 664 2223556777777888888888877
No 6
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.13 E-value=1e-10 Score=112.52 Aligned_cols=262 Identities=15% Similarity=0.094 Sum_probs=164.3
Q ss_pred cCceEEEEEeccCcceecCC-ccccCCcccEEEeceeeeeccCC-CcccCCCCcEEEE-EEEECCCccHHHHhccCCccc
Q 044491 136 RNVCEIELFLGSHKLVRLPE-SICTLKTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALE 212 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 212 (460)
.++++|++.... ...++. .+..+++|++|+|+++.....++ .+..+++|++|+| ++.+.+ .-...+..+++|+
T Consensus 52 ~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN--LSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS--CCHHHHTTCTTCS
T ss_pred ccCcEEECCCCc--CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc--CCHhHhCCCccCC
Confidence 478889885544 334554 56788999999999996655543 4668999999999 776642 2234578899999
Q ss_pred ceEeeeccCCCcee-EEE-eccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceE---EeecCCCeeEEEE
Q 044491 213 DLSIGHLDDKSLIN-FNI-SSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSY---MFHELPPFTKVFI 287 (460)
Q Consensus 213 ~L~L~~c~~~~~~~-~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l 287 (460)
.|++.++....+.. -.+ ..++|+.|.+.++....... .......++|+.|+++++..... .+..+++|+.+++
T Consensus 128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ--RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC--HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 99999987654433 112 34789999999984111100 00112368899999998765333 3456778888877
Q ss_pred EEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEEEEeccCc---ccHHHHHhcCCC
Q 044491 288 DIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAVKVELFGW---RLLPIILSSLPN 364 (460)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---~~l~~~l~~~p~ 364 (460)
..... ......++..+++++.|+++.+.+................++.+++.....+. ..++..+..+++
T Consensus 206 ~~n~l-------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 206 HMKQH-------ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp ECSCS-------TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred CCCcc-------ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence 53321 01123345678999999999976544322111113345678888882222222 346677889999
Q ss_pred CCeEEEeecccccccCcccccCCCCCc---ccccceeEEEEEe--ecCchhHHHHHHHHHhc
Q 044491 365 LEEFVFEKKLSCHFEEFGWIEQPNIPL---CLLLHVKKIEIKK--FEGQKDELGLVKYLLKN 421 (460)
Q Consensus 365 L~~L~I~~~~~~~~~~~~w~~~~~~~~---~~~~~L~~v~i~~--~~~~~~~~~~~~~ll~~ 421 (460)
|++|++.++.-. ..+. ...++|+++.+.+ +.+....+......+.+
T Consensus 279 L~~L~Ls~N~l~-----------~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~ 329 (353)
T 2z80_A 279 LLELEFSRNQLK-----------SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 329 (353)
T ss_dssp CCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCC-----------ccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence 999999986211 1111 1246899999875 56665555554444443
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.12 E-value=1.7e-11 Score=117.61 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=24.7
Q ss_pred cccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeec
Q 044491 157 ICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHL 219 (460)
Q Consensus 157 l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c 219 (460)
+..+++|++|+|++|..... +.+..+++|++|+| ++.+.+.. . +..+++|+.|++.+|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~-~~~~~l~~L~~L~l~~n~i~~~~---~-~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLNEDNISDIS---P-LANLTKMYSLNLGAN 142 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEECTTSCCCCCG---G-GTTCTTCCEEECTTC
T ss_pred hhcCCcCCEEEccCCcccCc-hHHcCCCcCCEEECcCCcccCch---h-hccCCceeEEECCCC
Confidence 33444555555554433222 23344455555555 43332211 1 344455555555444
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.03 E-value=2.3e-11 Score=116.60 Aligned_cols=228 Identities=12% Similarity=0.143 Sum_probs=132.5
Q ss_pred cccEEEEEecCCCCcchhhHHHHHHHhcCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcE
Q 044491 109 AIGKFSLDRWALSDLTRFRSWVDSIIMRNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKV 188 (460)
Q Consensus 109 ~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~ 188 (460)
.++.+.+....-.. +.. .....++++|++..+.. ..++ .+..+++|++|+|+++..... +....+++|++
T Consensus 67 ~L~~L~l~~n~i~~---~~~---~~~l~~L~~L~L~~n~i--~~~~-~~~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~ 136 (347)
T 4fmz_A 67 NLEYLNLNGNQITD---ISP---LSNLVKLTNLYIGTNKI--TDIS-ALQNLTNLRELYLNEDNISDI-SPLANLTKMYS 136 (347)
T ss_dssp TCCEEECCSSCCCC---CGG---GTTCTTCCEEECCSSCC--CCCG-GGTTCTTCSEEECTTSCCCCC-GGGTTCTTCCE
T ss_pred CccEEEccCCcccc---chh---hhcCCcCCEEEccCCcc--cCch-HHcCCCcCCEEECcCCcccCc-hhhccCCceeE
Confidence 37777776543222 111 12235788888855432 2233 466778888888888865554 33667888888
Q ss_pred EEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEe
Q 044491 189 LTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIH 267 (460)
Q Consensus 189 L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 267 (460)
|++ ++..... +.. +..++.|+.|.+.+|...+... -...++|+.|.+.+|..... .. ....++|+.|.++
T Consensus 137 L~l~~n~~~~~--~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~----~~-~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 137 LNLGANHNLSD--LSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDI----SP-LASLTSLHYFTAY 207 (347)
T ss_dssp EECTTCTTCCC--CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCC----GG-GGGCTTCCEEECC
T ss_pred EECCCCCCccc--ccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccc----cc-ccCCCccceeecc
Confidence 888 6633321 222 6678888888888876554433 11235788888777742111 11 2245777777777
Q ss_pred eeeeceE-EeecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-
Q 044491 268 DFCMVSY-MFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV- 345 (460)
Q Consensus 268 ~~~~~~~-~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L- 345 (460)
++..... .+..+++|+.+++..... ..... +..+++++.|.++.+.+.... .+..+++|+.|++
T Consensus 208 ~n~l~~~~~~~~~~~L~~L~l~~n~l--------~~~~~-~~~l~~L~~L~l~~n~l~~~~-----~~~~l~~L~~L~l~ 273 (347)
T 4fmz_A 208 VNQITDITPVANMTRLNSLKIGNNKI--------TDLSP-LANLSQLTWLEIGTNQISDIN-----AVKDLTKLKMLNVG 273 (347)
T ss_dssp SSCCCCCGGGGGCTTCCEEECCSSCC--------CCCGG-GTTCTTCCEEECCSSCCCCCG-----GGTTCTTCCEEECC
T ss_pred cCCCCCCchhhcCCcCCEEEccCCcc--------CCCcc-hhcCCCCCEEECCCCccCCCh-----hHhcCCCcCEEEcc
Confidence 7654222 256677777777643220 01111 667778888888775543321 1456677787777
Q ss_pred EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 346 KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 346 ~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
.+.-.+. ..+..+|+|++|++.++
T Consensus 274 ~n~l~~~----~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 274 SNQISDI----SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp SSCCCCC----GGGGGCTTCSEEECCSS
T ss_pred CCccCCC----hhhcCCCCCCEEECcCC
Confidence 4322221 24667788888888776
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.03 E-value=9.6e-11 Score=117.11 Aligned_cols=248 Identities=17% Similarity=0.193 Sum_probs=124.1
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
.++++|++..+. ...++. +..+++|++|+++++.....++ ...+++|++|+| ++.+.+-. . +..+++|+.|
T Consensus 68 ~~L~~L~Ls~n~--l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~---~-~~~l~~L~~L 139 (466)
T 1o6v_A 68 NNLTQINFSNNQ--LTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDID---P-LKNLTNLNRL 139 (466)
T ss_dssp TTCCEEECCSSC--CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG---G-GTTCTTCSEE
T ss_pred cCCCEEECCCCc--cCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCCh---H-HcCCCCCCEE
Confidence 356666664432 122232 4455666666666664433322 555666666666 54443211 1 4556666666
Q ss_pred EeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceE-EeecCCCeeEEEEEEEecC
Q 044491 215 SIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSY-MFHELPPFTKVFIDIFYDD 293 (460)
Q Consensus 215 ~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~p~L~~l~l~~~~~~ 293 (460)
++.+|...+...+ -..++|+.|.+.... ... .. ...+++|+.|+++++..... .+..+++|+.+.+.....
T Consensus 140 ~l~~n~l~~~~~~-~~l~~L~~L~l~~~~----~~~-~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l- 211 (466)
T 1o6v_A 140 ELSSNTISDISAL-SGLTSLQQLSFGNQV----TDL-KP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI- 211 (466)
T ss_dssp EEEEEEECCCGGG-TTCTTCSEEEEEESC----CCC-GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC-
T ss_pred ECCCCccCCChhh-ccCCcccEeecCCcc----cCc-hh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcc-
Confidence 6666654332210 112456666654321 110 11 12346666666666543221 244556666665532210
Q ss_pred CccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEee
Q 044491 294 GWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEK 372 (460)
Q Consensus 294 ~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~ 372 (460)
.... .+..+++|+.|.++.+.+...+ .+..+++|+.|++ .+.-... .. +..+++|++|++.+
T Consensus 212 -------~~~~-~~~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 212 -------SDIT-PLGILTNLDELSLNGNQLKDIG-----TLASLTNLTDLDLANNQISNL---AP-LSGLTKLTELKLGA 274 (466)
T ss_dssp -------CCCG-GGGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSCCCCC---GG-GTTCTTCSEEECCS
T ss_pred -------cccc-cccccCCCCEEECCCCCcccch-----hhhcCCCCCEEECCCCccccc---hh-hhcCCCCCEEECCC
Confidence 0011 1455667777777665443321 1345667777777 3322211 11 56677777777776
Q ss_pred cccccccCcccccCCCCCcccccceeEEEEEeec--CchhHHHHHHHHHhcCcccceEEEEecc
Q 044491 373 KLSCHFEEFGWIEQPNIPLCLLLHVKKIEIKKFE--GQKDELGLVKYLLKNCKVLNKVIIRCKE 434 (460)
Q Consensus 373 ~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i~~~~--~~~~~~~~~~~ll~~a~~Le~l~i~~~~ 434 (460)
+.-. .. .+-...++|+.+.+.+.. +... +.+.+.|+.+.+....
T Consensus 275 n~l~--------~~--~~~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 275 NQIS--------NI--SPLAGLTALTNLELNENQLEDISP--------ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp SCCC--------CC--GGGTTCTTCSEEECCSSCCSCCGG--------GGGCTTCSEEECCSSC
T ss_pred CccC--------cc--ccccCCCccCeEEcCCCcccCchh--------hcCCCCCCEEECcCCc
Confidence 5111 00 111234678888887532 2221 5688999999887653
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.03 E-value=1.6e-10 Score=115.53 Aligned_cols=210 Identities=17% Similarity=0.165 Sum_probs=92.5
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHH------------
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTE------------ 202 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~------------ 202 (460)
.++++|++..+. ...++. +..+++|++|+|++|..... +....+++|++|+| .+.+.+...+.
T Consensus 90 ~~L~~L~l~~n~--l~~~~~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 90 TKLVDILMNNNQ--IADITP-LANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 165 (466)
T ss_dssp TTCCEEECCSSC--CCCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE
T ss_pred ccCCEEECCCCc--cccChh-hcCCCCCCEEECCCCCCCCC-hHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCC
Confidence 456666664432 122222 45566666666666644343 22556666666666 66554322110
Q ss_pred -----HHhccCCcccceEeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceE-Ee
Q 044491 203 -----RLFSICPALEDLSIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSY-MF 276 (460)
Q Consensus 203 -----~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~ 276 (460)
.-+..++.|+.|++.+|...+...+ -..++|+.|.+.+|..... .. ....++|+.|+++++..... .+
T Consensus 166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l-~~l~~L~~L~l~~n~l~~~----~~-~~~l~~L~~L~l~~n~l~~~~~l 239 (466)
T 1o6v_A 166 QVTDLKPLANLTTLERLDISSNKVSDISVL-AKLTNLESLIATNNQISDI----TP-LGILTNLDELSLNGNQLKDIGTL 239 (466)
T ss_dssp SCCCCGGGTTCTTCCEEECCSSCCCCCGGG-GGCTTCSEEECCSSCCCCC----GG-GGGCTTCCEEECCSSCCCCCGGG
T ss_pred cccCchhhccCCCCCEEECcCCcCCCChhh-ccCCCCCEEEecCCccccc----cc-ccccCCCCEEECCCCCcccchhh
Confidence 0134455555555555543322110 0124555555555531100 00 11245555555555433211 23
Q ss_pred ecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccH
Q 044491 277 HELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLL 355 (460)
Q Consensus 277 ~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l 355 (460)
..+++|+.+++..... .... .+..+++|+.|.++.+.+..... ...+++|+.|++ .+.-.+ +
T Consensus 240 ~~l~~L~~L~l~~n~l--------~~~~-~~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~---~ 302 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQI--------SNLA-PLSGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLED---I 302 (466)
T ss_dssp GGCTTCSEEECCSSCC--------CCCG-GGTTCTTCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSSCCSC---C
T ss_pred hcCCCCCEEECCCCcc--------ccch-hhhcCCCCCEEECCCCccCcccc-----ccCCCccCeEEcCCCcccC---c
Confidence 3455555555432110 0000 14455556666665543322211 334555566555 222111 1
Q ss_pred HHHHhcCCCCCeEEEeec
Q 044491 356 PIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 356 ~~~l~~~p~L~~L~I~~~ 373 (460)
.. +..+|+|+.|++.++
T Consensus 303 ~~-~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 303 SP-ISNLKNLTYLTLYFN 319 (466)
T ss_dssp GG-GGGCTTCSEEECCSS
T ss_pred hh-hcCCCCCCEEECcCC
Confidence 11 445566666666554
No 11
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.00 E-value=2.2e-10 Score=117.99 Aligned_cols=264 Identities=13% Similarity=0.028 Sum_probs=151.9
Q ss_pred CccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCC-CceeEEEecc
Q 044491 155 ESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDK-SLINFNISST 232 (460)
Q Consensus 155 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~-~~~~~~i~~~ 232 (460)
..+..+++|+.|.++++.....+.....+++|++|+| ++.+ ++..+..++..||+|+.|.+.++... ++..+.-.++
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l-~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL-ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK 342 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC-CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT
T ss_pred HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC-CHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCC
Confidence 3444556666666665532233333456889999999 7764 34566677888999999999854311 1111112357
Q ss_pred ccceEEEEe----------ecCccccCCceeEEEecCCceeEEEeeeeeceE---Eee-cCCCeeEEEEEEEec--CCcc
Q 044491 233 TLKRLCLSF----------TNGVAYSNNWHKVMIATPNLELLNIHDFCMVSY---MFH-ELPPFTKVFIDIFYD--DGWS 296 (460)
Q Consensus 233 ~L~~L~l~~----------~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~-~~p~L~~l~l~~~~~--~~~~ 296 (460)
+|+.|.+.+ |...+..+. ..+...+|+|++|.+........ .+. .+++|+.+++..... ...+
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~-~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGL-IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHH-HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCEEEeecCccccccccccCccCHHHH-HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 899999985 532211110 11223479999999955433211 222 488999988864320 0011
Q ss_pred ccccccHHHHhhcCcceeEEEEeccc--hhhhhhhccccCCCCCceeEEEEEEeccCcccHHHHHhcCCCCCeEEEeecc
Q 044491 297 WVQSGRAQRLLNSLTKAKFLALSADT--VYALDKIYKDVFPKFPNVTCLAVKVELFGWRLLPIILSSLPNLEEFVFEKKL 374 (460)
Q Consensus 297 ~~~~~~~~~~l~~l~~l~~L~l~~~~--~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~~l~~~p~L~~L~I~~~~ 374 (460)
......+..++.++++|+.|.++... +.... .......+++|+.|+|.+...+..++..++.+|++|++|+|.+|.
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG--LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH--HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHH--HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 00012366678889999999996411 11111 011123477899999943346666788899999999999999984
Q ss_pred cccccCcccccCCCCCcccccceeEEEEEeecCchhHHHHHHHHHhcCcccceEEEEe
Q 044491 375 SCHFEEFGWIEQPNIPLCLLLHVKKIEIKKFEGQKDELGLVKYLLKNCKVLNKVIIRC 432 (460)
Q Consensus 375 ~~~~~~~~w~~~~~~~~~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~Le~l~i~~ 432 (460)
-. ..+..+ .....++|+.+.+.+..-.... ++.+.+..|.|.-..|..
T Consensus 500 l~-~~~~~~------~~~~l~~L~~L~ls~n~it~~~---~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 500 FS-ERAIAA------AVTKLPSLRYLWVQGYRASMTG---QDLMQMARPYWNIELIPS 547 (592)
T ss_dssp CB-HHHHHH------HHHHCSSCCEEEEESCBCCTTC---TTGGGGCCTTEEEEEECC
T ss_pred Cc-HHHHHH------HHHhcCccCeeECcCCcCCHHH---HHHHHHhCCCcEEEEecC
Confidence 11 010000 0012368899988876533222 233455666665555544
No 12
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.95 E-value=9e-12 Score=118.92 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=36.8
Q ss_pred CcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccC
Q 044491 161 KTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDD 221 (460)
Q Consensus 161 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 221 (460)
++++.|++.++.....++....+++|++|+| ++.+. +..+..++..||+|++|++.+|..
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~~~~~~~~L~~L~L~~~~l 130 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE-VSTLHGILSQCSKLQNLSLEGLRL 130 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEEC-HHHHHHHHTTBCCCSEEECTTCBC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcC-HHHHHHHHhhCCCCCEEeCcCccc
Confidence 5666666666655444445556677777777 55543 233566666677777777776653
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.93 E-value=3.6e-10 Score=110.13 Aligned_cols=62 Identities=15% Similarity=0.146 Sum_probs=28.6
Q ss_pred HhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 306 LLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 306 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
.+..+++|+.|+++.+.+... .+..+..+++|+.|++ .+. ...+......+|+|++|++.++
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKI---MYHPFVKMQRLERLYISNNR---LVALNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEE---ESGGGTTCSSCCEEECCSSC---CCEEECSSSCCTTCCEEECCSS
T ss_pred HHcCCCCccEEECCCCcCCCc---ChhHccccccCCEEECCCCc---CcccCcccCCCCCCCEEECCCC
Confidence 345566666666666433221 1112344555666666 221 1112222344566666666554
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.93 E-value=6.5e-10 Score=105.64 Aligned_cols=227 Identities=13% Similarity=0.115 Sum_probs=141.8
Q ss_pred CCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEEeccccceEE
Q 044491 160 LKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNISSTTLKRLC 238 (460)
Q Consensus 160 ~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~ 238 (460)
.++++.|+|+++.....|+....+++|++|+| ++.+. .+...+..+++|+.|+|.+|....+...--..++|+.|.
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC---CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc---chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 37899999999977777777888999999999 66554 233446779999999999997543221111235777777
Q ss_pred EEeecCccccCCceeEEEecCCceeEEEeeeeeceEEeecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeEEEE
Q 044491 239 LSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYMFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLAL 318 (460)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l 318 (460)
+.+|....... ..+....+ ...+.++++|+.+++..... ..+...+..+++|+.|.+
T Consensus 157 L~~n~~~~~~p---------~~~~~~~~------~~~~~~l~~L~~L~L~~n~l--------~~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 157 IRACPELTELP---------EPLASTDA------SGEHQGLVNLQSLRLEWTGI--------RSLPASIANLQNLKSLKI 213 (328)
T ss_dssp EEEETTCCCCC---------SCSEEEC-------CCCEEESTTCCEEEEEEECC--------CCCCGGGGGCTTCCEEEE
T ss_pred CCCCCCccccC---------hhHhhccc------hhhhccCCCCCEEECcCCCc--------CcchHhhcCCCCCCEEEc
Confidence 77764211110 11111111 12255689999999865542 123344778999999999
Q ss_pred eccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeecccccccCcccccCCCCCcccccce
Q 044491 319 SADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKKLSCHFEEFGWIEQPNIPLCLLLHV 397 (460)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~~~~~~~~~~w~~~~~~~~~~~~~L 397 (460)
+.+.+..... .+..+++|+.|++ .+.... .++..+..+++|+.|+|.+|.... ..+. .-...++|
T Consensus 214 ~~N~l~~l~~----~l~~l~~L~~L~Ls~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~-------~~p~-~~~~l~~L 279 (328)
T 4fcg_A 214 RNSPLSALGP----AIHHLPKLEELDLRGCTALR--NYPPIFGGRAPLKRLILKDCSNLL-------TLPL-DIHRLTQL 279 (328)
T ss_dssp ESSCCCCCCG----GGGGCTTCCEEECTTCTTCC--BCCCCTTCCCCCCEEECTTCTTCC-------BCCT-TGGGCTTC
T ss_pred cCCCCCcCch----hhccCCCCCEEECcCCcchh--hhHHHhcCCCCCCEEECCCCCchh-------hcch-hhhcCCCC
Confidence 9976553322 2556789999999 544322 244557789999999999872211 0010 01123678
Q ss_pred eEEEEEeec--CchhHHHHHHHHHhcCcccceEEEEe
Q 044491 398 KKIEIKKFE--GQKDELGLVKYLLKNCKVLNKVIIRC 432 (460)
Q Consensus 398 ~~v~i~~~~--~~~~~~~~~~~ll~~a~~Le~l~i~~ 432 (460)
+.+.+.+.. +...+ -+.+.+.|+.+.+..
T Consensus 280 ~~L~L~~n~~~~~iP~------~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPS------LIAQLPANCIILVPP 310 (328)
T ss_dssp CEEECTTCTTCCCCCG------GGGGSCTTCEEECCG
T ss_pred CEEeCCCCCchhhccH------HHhhccCceEEeCCH
Confidence 888887532 22111 245677777776654
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.92 E-value=1.8e-10 Score=108.40 Aligned_cols=249 Identities=14% Similarity=0.126 Sum_probs=144.3
Q ss_pred ceecCCccccCCcccEEEeceeeeeccCCC-cccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeE
Q 044491 150 LVRLPESICTLKTLEVLKLYSDFVIKIPPS-GLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINF 227 (460)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~ 227 (460)
...+|..+. ++|++|+|+++.....++. +..+++|++|+| ++.+...+.....+..+++|+.|++.++....+...
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~ 96 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 96 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh
Confidence 344554332 5788888888866555443 457888888888 665432222223344688888888888864332222
Q ss_pred EEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeece---EEeecCCCeeEEEEEEEecCCccccccccHH
Q 044491 228 NISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVS---YMFHELPPFTKVFIDIFYDDGWSWVQSGRAQ 304 (460)
Q Consensus 228 ~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ 304 (460)
-...++|+.|.+.++.-..... .......++|+.|+++++.... ..+..+++|+.+++...... +....
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~ 168 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ------ENFLP 168 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTT--TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG------GGEEC
T ss_pred cCCCCCCCEEECCCCccccccc--chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc------cccch
Confidence 2234678888887764111110 0112245788899888775422 22456788888877322200 00123
Q ss_pred HHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeecccccccCccc
Q 044491 305 RLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKKLSCHFEEFGW 383 (460)
Q Consensus 305 ~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~~~~~~~~~~w 383 (460)
..+..+++|+.|.++.+.+... .+..+..+++|+.|++ .+.-.+.. ...+..+++|+.|+++++.-..
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~------ 237 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQL---SPTAFNSLSSLQVLNMSHNNFFSLD--TFPYKCLNSLQVLDYSLNHIMT------ 237 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTSCCSBCC--SGGGTTCTTCCEEECTTSCCCB------
T ss_pred hHHhhCcCCCEEECCCCCcCCc---CHHHhcCCCCCCEEECCCCccCccC--hhhccCcccCCEeECCCCCCcc------
Confidence 3466788999999988655432 1223567789999999 44322211 1235778999999998862110
Q ss_pred ccCCCCCcccccceeEEEEEe--ecCchhHHHHHHHHHh
Q 044491 384 IEQPNIPLCLLLHVKKIEIKK--FEGQKDELGLVKYLLK 420 (460)
Q Consensus 384 ~~~~~~~~~~~~~L~~v~i~~--~~~~~~~~~~~~~ll~ 420 (460)
..+.......++|+.+.+.+ +.+......+.+++-.
T Consensus 238 -~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~ 275 (306)
T 2z66_A 238 -SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 275 (306)
T ss_dssp -CSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHH
T ss_pred -cCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHh
Confidence 01111111225889998875 5666666667776543
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.89 E-value=5.9e-10 Score=105.24 Aligned_cols=218 Identities=16% Similarity=0.079 Sum_probs=107.9
Q ss_pred CceEEEEEeccCc-ceecCCccccCCcccEEEece-eeee-ccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCccc
Q 044491 137 NVCEIELFLGSHK-LVRLPESICTLKTLEVLKLYS-DFVI-KIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALE 212 (460)
Q Consensus 137 ~l~~L~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~-~~~~-~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 212 (460)
+|++|++...... ...+|..+..+++|++|+|++ +... ..|..+..+++|++|+| ++.+. +.+...+..+++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS--GAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE--EECCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC--CcCCHHHhCCCCCC
Confidence 5666666544321 125566666666777777764 3232 23334556677777777 55443 12333455666677
Q ss_pred ceEeeeccCCCceeEEE-eccccceEEEEeecCccccCCceeEEEecC-CceeEEEeeeeeceE---EeecCCCeeEEEE
Q 044491 213 DLSIGHLDDKSLINFNI-SSTTLKRLCLSFTNGVAYSNNWHKVMIATP-NLELLNIHDFCMVSY---MFHELPPFTKVFI 287 (460)
Q Consensus 213 ~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p-~L~~L~l~~~~~~~~---~~~~~p~L~~l~l 287 (460)
.|++.++...+...-.+ ..++|+.|.+.++.-. +.........+ +|+.|+++++..... .+..++ |+.+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~---~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS---GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE---EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCccc---CcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 77776665321110001 1245666666555310 00000011223 677777766543211 122333 555555
Q ss_pred EEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCC
Q 044491 288 DIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLE 366 (460)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~ 366 (460)
..... .......+..+++|+.|.++.+.+...... ...+++|+.|++ .+. .. ..++..+..+++|+
T Consensus 205 s~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~l~~L~~L~Ls~N~-l~-~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 205 SRNML-------EGDASVLFGSDKNTQKIHLAKNSLAFDLGK----VGLSKNLNGLDLRNNR-IY-GTLPQGLTQLKFLH 271 (313)
T ss_dssp CSSEE-------EECCGGGCCTTSCCSEEECCSSEECCBGGG----CCCCTTCCEEECCSSC-CE-ECCCGGGGGCTTCC
T ss_pred cCCcc-------cCcCCHHHhcCCCCCEEECCCCceeeecCc----ccccCCCCEEECcCCc-cc-CcCChHHhcCcCCC
Confidence 21110 012334456677788888777554321111 345677788877 322 11 12444567778888
Q ss_pred eEEEeec
Q 044491 367 EFVFEKK 373 (460)
Q Consensus 367 ~L~I~~~ 373 (460)
.|+++++
T Consensus 272 ~L~Ls~N 278 (313)
T 1ogq_A 272 SLNVSFN 278 (313)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 8888775
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.87 E-value=1.5e-09 Score=112.01 Aligned_cols=101 Identities=13% Similarity=0.143 Sum_probs=49.0
Q ss_pred CCceeEEEeeeeece-EEeecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCC
Q 044491 259 PNLELLNIHDFCMVS-YMFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKF 337 (460)
Q Consensus 259 p~L~~L~l~~~~~~~-~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~ 337 (460)
++|+.|.++++.... ..+..+++|+.+++..... . ......+..+++|+.|.++.+.+...+. ....+
T Consensus 232 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l--~-----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~l 300 (597)
T 3oja_B 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL--E-----KIMYHPFVKMQRLERLYISNNRLVALNL----YGQPI 300 (597)
T ss_dssp SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC--C-----EEESGGGTTCSSCCEEECTTSCCCEEEC----SSSCC
T ss_pred CCCCEEECCCCCCCCChhhccCCCCCEEECCCCcc--C-----CCCHHHhcCccCCCEEECCCCCCCCCCc----ccccC
Confidence 345555555543321 2234556666655532110 0 1112334556667777766654433221 13446
Q ss_pred CceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 338 PNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 338 ~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
++|+.|+| .+.-. .++.-+..+|+|+.|++.++
T Consensus 301 ~~L~~L~Ls~N~l~---~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 301 PTLKVLDLSHNHLL---HVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp TTCCEEECCSSCCC---CCGGGHHHHTTCSEEECCSS
T ss_pred CCCcEEECCCCCCC---ccCcccccCCCCCEEECCCC
Confidence 67777777 33211 23333455667777777664
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.85 E-value=1.6e-09 Score=111.06 Aligned_cols=83 Identities=13% Similarity=0.112 Sum_probs=36.6
Q ss_pred cCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEEec
Q 044491 153 LPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNISS 231 (460)
Q Consensus 153 lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~ 231 (460)
.|..+..+++|+.|+++++.....+.....+ +|++|++ .+.+.. +.. ..++.|+.|.+.++...+.... ...
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~---l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~ 346 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ---FPT--LKLKSLKRLTFTSNKGGNAFSE-VDL 346 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS---CCB--CBCSSCCEEEEESCBSCCBCCC-CBC
T ss_pred chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc---cCc--ccccccCEEeCcCCcccccccc-ccC
Confidence 3444445556666666555444443333344 5555555 443331 110 2345555555555443221111 223
Q ss_pred cccceEEEEee
Q 044491 232 TTLKRLCLSFT 242 (460)
Q Consensus 232 ~~L~~L~l~~~ 242 (460)
++|+.|.+.++
T Consensus 347 ~~L~~L~l~~n 357 (570)
T 2z63_A 347 PSLEFLDLSRN 357 (570)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEeCcCC
Confidence 44555555444
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.84 E-value=4.8e-09 Score=107.39 Aligned_cols=253 Identities=20% Similarity=0.226 Sum_probs=122.0
Q ss_pred CceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceE
Q 044491 137 NVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLS 215 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~ 215 (460)
++++|++.... ...+|..+..+ +|++|++++|.....+. ..+++|++|++ .+...... .. ..+|+|+.|+
T Consensus 283 ~L~~L~l~~~~--l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~--~~--~~~~~L~~L~ 353 (570)
T 2z63_A 283 NVSSFSLVSVT--IERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAF--SE--VDLPSLEFLD 353 (570)
T ss_dssp TCSEEEEESCE--ECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBC--CC--CBCTTCCEEE
T ss_pred cccEEEecCcc--chhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccc--cc--ccCCCCCEEe
Confidence 55666664433 23456556566 77777777775443322 46677777777 55433211 11 5567777777
Q ss_pred eeeccCCCceeEE---EeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeece----EEeecCCCeeEEEEE
Q 044491 216 IGHLDDKSLINFN---ISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVS----YMFHELPPFTKVFID 288 (460)
Q Consensus 216 L~~c~~~~~~~~~---i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~----~~~~~~p~L~~l~l~ 288 (460)
+.+|...+..... ...++|+.|.+.+|... + .......+++|++|+++++.... ..+.++++|+.+++.
T Consensus 354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~---~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---T-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE---E-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred CcCCccCccccccccccccCccCEEECCCCccc---c-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence 7766533211100 02356777776666311 1 01113345677777776654311 123455666666552
Q ss_pred EEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCe
Q 044491 289 IFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEE 367 (460)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~ 367 (460)
.... .......+.++++|+.|.++.+.+.. ...+..+..+++|+.|++ .+.-.+ ..+..+..+++|++
T Consensus 430 ~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~p~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 430 HTHT-------RVAFNGIFNGLSSLEVLKMAGNSFQE--NFLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSLQV 498 (570)
T ss_dssp TSCC-------EECCTTTTTTCTTCCEEECTTCEEGG--GEECSCCTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCE
T ss_pred CCcc-------cccchhhhhcCCcCcEEECcCCcCcc--ccchhhhhcccCCCEEECCCCcccc--CChhhhhcccCCCE
Confidence 1110 01122334556677777766644321 011122455666777766 332111 12334556677777
Q ss_pred EEEeecccccccCcccccCCCCCcccccceeEEEEEe--ecCchhHHHHH-HHHHhc
Q 044491 368 FVFEKKLSCHFEEFGWIEQPNIPLCLLLHVKKIEIKK--FEGQKDELGLV-KYLLKN 421 (460)
Q Consensus 368 L~I~~~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i~~--~~~~~~~~~~~-~~ll~~ 421 (460)
|++.++.-. ..+...-...++|+.+.+.+ +.+......++ .++-.+
T Consensus 499 L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~ 547 (570)
T 2z63_A 499 LNMASNQLK--------SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 547 (570)
T ss_dssp EECCSSCCS--------CCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred EeCCCCcCC--------CCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhc
Confidence 777664111 00000001125677777664 44554444554 444443
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.84 E-value=3.8e-09 Score=107.70 Aligned_cols=227 Identities=15% Similarity=0.089 Sum_probs=144.9
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCC-CcccCCCCcEEEE-EEEECCCccHHHHhccCCcccc
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALED 213 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 213 (460)
..+++|++..... ....|..+..+++|++|+|+++.....++ .+..+++|++|+| ++.+.+ .....+..+++|++
T Consensus 26 ~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS--LSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCC-CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS--CCHHHHTTCTTCCE
T ss_pred CCccEEECcCCcc-CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc--cCHHHhccCCCCcE
Confidence 4788888866542 22335567788999999999996666543 4668999999999 776642 33455788999999
Q ss_pred eEeeeccCCCcee--EEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceE---EeecCCCeeEEEEE
Q 044491 214 LSIGHLDDKSLIN--FNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSY---MFHELPPFTKVFID 288 (460)
Q Consensus 214 L~L~~c~~~~~~~--~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~ 288 (460)
|++.+|...+... .--..++|+.|.+.++....... .......++|+.|+++++..... .+..+++|+.+++.
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR--RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccC--HhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 9999987653221 11124689999999885211000 00112368899999998765332 34556778877775
Q ss_pred EEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EE--eccCcccHHHHHhcCCCC
Q 044491 289 IFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KV--ELFGWRLLPIILSSLPNL 365 (460)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~--~~~~~~~l~~~l~~~p~L 365 (460)
..... .....++..+++++.|.++.+.+.............+++|+.|++ .+ .......+...+..+++|
T Consensus 181 ~n~~~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 181 LSESA-------FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp CSBST-------THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred cCccc-------ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 33310 112234567899999999987654432111112345778999998 22 222233456667788899
Q ss_pred CeEEEeecc
Q 044491 366 EEFVFEKKL 374 (460)
Q Consensus 366 ~~L~I~~~~ 374 (460)
+.|++..|.
T Consensus 254 ~~l~l~~~~ 262 (549)
T 2z81_A 254 SEVEFDDCT 262 (549)
T ss_dssp CEEEEESCE
T ss_pred ccccccccc
Confidence 999888773
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.83 E-value=3.8e-11 Score=124.12 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=30.6
Q ss_pred cccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeecc
Q 044491 157 ICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLD 220 (460)
Q Consensus 157 l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 220 (460)
+..+++|+.|+|+++.....|.....+++|++|+| ++.+.+ .....+..+|+|+.|.+.+|.
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN--LCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSB--GGGGCGGGCTTCSEEECCSCS
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCc--CchhhhhccCcCCEEECCCCC
Confidence 33455666666665544444444445556666666 443321 112334445555555555553
No 22
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.83 E-value=3.4e-11 Score=120.14 Aligned_cols=257 Identities=11% Similarity=0.076 Sum_probs=150.7
Q ss_pred cccEEEEEecCCCCcchhhHHHH-HHHhcCceEEEEEeccCcce---ecCCccccCCcccEEEeceeeeeccCC-C-ccc
Q 044491 109 AIGKFSLDRWALSDLTRFRSWVD-SIIMRNVCEIELFLGSHKLV---RLPESICTLKTLEVLKLYSDFVIKIPP-S-GLC 182 (460)
Q Consensus 109 ~l~~l~l~~~~~~~~~~~~~wi~-~~~~~~l~~L~l~~~~~~~~---~lp~~l~~~~~L~~L~L~~~~~~~~~~-~-~~~ 182 (460)
.++.+.+.+.. .... .|.. ....+++++|++..+..... .++..+..+++|++|+|+++...+... . ...
T Consensus 4 ~l~~L~Ls~~~-l~~~---~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 4 DIQSLDIQCEE-LSDA---RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEESCC-CCHH---HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred cceehhhhhcc-cCch---hHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 36677775432 2222 2333 22235899999976653222 456666778999999999885433211 1 123
Q ss_pred CC----CCcEEEE-EEEECCCc--cHHHHhccCCcccceEeeeccCCCc--eeEE----EeccccceEEEEeecCccccC
Q 044491 183 FR----SLKVLTV-VLEYPDNN--LTERLFSICPALEDLSIGHLDDKSL--INFN----ISSTTLKRLCLSFTNGVAYSN 249 (460)
Q Consensus 183 l~----~L~~L~L-~~~~~~~~--~l~~l~~~cp~Le~L~L~~c~~~~~--~~~~----i~~~~L~~L~l~~~~~~~~~~ 249 (460)
++ +|++|+| ++.+.+.+ .+...+..+++|++|++.+|...+. ..+. -..++|+.|.+.+|.-.....
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 44 7999999 77765322 4566678899999999998864321 1110 012469999988874111000
Q ss_pred -CceeEEEecCCceeEEEeeeeeceEE---e-----ecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeEEEEec
Q 044491 250 -NWHKVMIATPNLELLNIHDFCMVSYM---F-----HELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSA 320 (460)
Q Consensus 250 -~~~~~~~~~p~L~~L~l~~~~~~~~~---~-----~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~ 320 (460)
.+......+++|++|+++++...... + ...++|+.+++..+..... ....+...+..++++++|.++.
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~---~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD---NCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT---HHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH---HHHHHHHHHHhCCCccEEeccC
Confidence 00111123589999999887542111 1 1356888877743221000 0012556677889999999988
Q ss_pred cchhhhh--hhccccCCCCCceeEEEE-EEeccCccc---HHHHHhcCCCCCeEEEeec
Q 044491 321 DTVYALD--KIYKDVFPKFPNVTCLAV-KVELFGWRL---LPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 321 ~~~~~~~--~~~~~~~~~~~~L~~L~L-~~~~~~~~~---l~~~l~~~p~L~~L~I~~~ 373 (460)
+.+...+ .........+++|++|++ .+ ..+..+ +...+..+++|++|++.++
T Consensus 237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred CcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 6554322 111222345778999999 44 333333 6677778899999998876
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.82 E-value=3.8e-09 Score=102.86 Aligned_cols=232 Identities=12% Similarity=0.123 Sum_probs=125.2
Q ss_pred CceEEEEEeccCcceecC-CccccCCcccEEEeceeeeeccCCCc-ccCCCCcEEEE-EEEECCCccHHHHhccCCcccc
Q 044491 137 NVCEIELFLGSHKLVRLP-ESICTLKTLEVLKLYSDFVIKIPPSG-LCFRSLKVLTV-VLEYPDNNLTERLFSICPALED 213 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~~~-~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 213 (460)
++++|++.... ...++ ..+..+++|++|+|+++.....++.. ..+++|++|+| ++.+.. .....+..+++|+.
T Consensus 94 ~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~ 169 (390)
T 3o6n_A 94 TIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQN 169 (390)
T ss_dssp TCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTSSCTTCCE
T ss_pred CcCEEECCCCC--CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc--cChhhccCCCCCCE
Confidence 55666554332 12222 22344556666666665444443332 45566666666 443321 11223445555666
Q ss_pred eEeeeccCCCc------------------eeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeece-E
Q 044491 214 LSIGHLDDKSL------------------INFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVS-Y 274 (460)
Q Consensus 214 L~L~~c~~~~~------------------~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~-~ 274 (460)
|.+.++...+. ..+. ..++|+.|.+.++.-.... ....++|+.|+++++.... .
T Consensus 170 L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~L~~L~l~~n~l~~~~------~~~~~~L~~L~l~~n~l~~~~ 242 (390)
T 3o6n_A 170 LQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA-IPIAVEELDASHNSINVVR------GPVNVELTILKLQHNNLTDTA 242 (390)
T ss_dssp EECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE-CCSSCSEEECCSSCCCEEE------CCCCSSCCEEECCSSCCCCCG
T ss_pred EECCCCcCCccccccccccceeecccccccccC-CCCcceEEECCCCeeeecc------ccccccccEEECCCCCCcccH
Confidence 66655543211 1111 1235666666655311111 1124678888887765422 2
Q ss_pred EeecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcc
Q 044491 275 MFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWR 353 (460)
Q Consensus 275 ~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~ 353 (460)
.+..+++|+.+++..... . ......+..+++|+.|.++.+.+..... ....+++|+.|++ .+. . .
T Consensus 243 ~l~~l~~L~~L~Ls~n~l--~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~l~~L~~L~L~~n~-l--~ 308 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNEL--E-----KIMYHPFVKMQRLERLYISNNRLVALNL----YGQPIPTLKVLDLSHNH-L--L 308 (390)
T ss_dssp GGGGCTTCSEEECCSSCC--C-----EEESGGGTTCSSCCEEECCSSCCCEEEC----SSSCCTTCCEEECCSSC-C--C
T ss_pred HHcCCCCccEEECCCCcC--C-----CcChhHccccccCCEEECCCCcCcccCc----ccCCCCCCCEEECCCCc-c--e
Confidence 356778888887743220 0 1123456788999999999976654322 2456889999999 442 2 2
Q ss_pred cHHHHHhcCCCCCeEEEeecccccccCcccccCCCCCcccccceeEEEEEe
Q 044491 354 LLPIILSSLPNLEEFVFEKKLSCHFEEFGWIEQPNIPLCLLLHVKKIEIKK 404 (460)
Q Consensus 354 ~l~~~l~~~p~L~~L~I~~~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i~~ 404 (460)
.++.-+..+++|++|++.++.-. ..+....++|+.+.+.+
T Consensus 309 ~~~~~~~~l~~L~~L~L~~N~i~-----------~~~~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 309 HVERNQPQFDRLENLYLDHNSIV-----------TLKLSTHHTLKNLTLSH 348 (390)
T ss_dssp CCGGGHHHHTTCSEEECCSSCCC-----------CCCCCTTCCCSEEECCS
T ss_pred ecCccccccCcCCEEECCCCccc-----------eeCchhhccCCEEEcCC
Confidence 34444677899999999986211 11222346788888765
No 24
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.82 E-value=1.2e-09 Score=102.93 Aligned_cols=121 Identities=12% Similarity=0.153 Sum_probs=77.0
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
.++++|++..+. ...++ .+..+++|+.|+|++|.....++ ...+++|++|+| ++.+.+- . -+..+++|+.|
T Consensus 41 ~~L~~L~l~~~~--i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~---~-~~~~l~~L~~L 112 (308)
T 1h6u_A 41 DGITTLSAFGTG--VTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV---S-AIAGLQSIKTL 112 (308)
T ss_dssp HTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC---G-GGTTCTTCCEE
T ss_pred CCcCEEEeeCCC--ccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc---h-hhcCCCCCCEE
Confidence 478888885543 22344 46678899999999886655534 778889999999 7766542 2 36678899999
Q ss_pred EeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeee
Q 044491 215 SIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFC 270 (460)
Q Consensus 215 ~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 270 (460)
.+.+|...+...+ ...++|+.|.+.++.-... .. ....++|+.|+++++.
T Consensus 113 ~l~~n~l~~~~~l-~~l~~L~~L~l~~n~l~~~----~~-l~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 113 DLTSTQITDVTPL-AGLSNLQVLYLDLNQITNI----SP-LAGLTNLQYLSIGNAQ 162 (308)
T ss_dssp ECTTSCCCCCGGG-TTCTTCCEEECCSSCCCCC----GG-GGGCTTCCEEECCSSC
T ss_pred ECCCCCCCCchhh-cCCCCCCEEECCCCccCcC----cc-ccCCCCccEEEccCCc
Confidence 9998876554321 1225677777766641111 11 1234666666666653
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.80 E-value=2.3e-10 Score=118.19 Aligned_cols=139 Identities=17% Similarity=0.121 Sum_probs=79.9
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
.++++|++.... ...+| .+..+++|+.|++++|..... |.. .+++|++|++ .+.... .+ -+..+|+|+.|
T Consensus 285 ~~L~~L~l~~~~--~~~l~-~l~~~~~L~~L~l~~n~l~~l-p~~-~l~~L~~L~l~~n~~~~--~~--~~~~l~~L~~L 355 (606)
T 3vq2_A 285 ANVSAMSLAGVS--IKYLE-DVPKHFKWQSLSIIRCQLKQF-PTL-DLPFLKSLTLTMNKGSI--SF--KKVALPSLSYL 355 (606)
T ss_dssp TTCSEEEEESCC--CCCCC-CCCTTCCCSEEEEESCCCSSC-CCC-CCSSCCEEEEESCSSCE--EC--CCCCCTTCCEE
T ss_pred CCCCEEEecCcc--chhhh-hccccccCCEEEcccccCccc-ccC-CCCccceeeccCCcCcc--ch--hhccCCCCCEE
Confidence 578888886654 23455 566778888888888866444 444 7888888888 553321 11 34467788888
Q ss_pred EeeeccCCCceeE---EEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeece----EEeecCCCeeEEEE
Q 044491 215 SIGHLDDKSLINF---NISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVS----YMFHELPPFTKVFI 287 (460)
Q Consensus 215 ~L~~c~~~~~~~~---~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~----~~~~~~p~L~~l~l 287 (460)
++.+|...+.... ....++|+.|.+.+|..... ......+++|+.|+++++.... ..+..+++|+.+++
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 431 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM----SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE----CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCccccc----hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC
Confidence 8877753221100 01235677777766641110 1111135667777776654321 12345566666665
No 26
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.80 E-value=4.6e-10 Score=106.16 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=38.2
Q ss_pred HhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 306 LLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 306 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
+...+++++.|.++.+.+..... ...+++|+.|++ .+. . ..++.-+..+++|+.|++.++
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~~~-----~~~l~~L~~L~Ls~N~-l--~~l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDVKG-----QVVFAKLKTLDLSSNK-L--AFMGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEEEC-----CCCCTTCCEEECCSSC-C--CEECGGGGGGTTCSEEECTTS
T ss_pred HhhccCcCCEEECCCCcCccccc-----ccccccCCEEECCCCc-C--CcchhhhcccCcccEEECcCC
Confidence 34567888888888765543321 224778888888 332 1 123333667888999988875
No 27
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.79 E-value=1.3e-09 Score=115.77 Aligned_cols=144 Identities=14% Similarity=0.047 Sum_probs=90.0
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
.++++|++..+.. ....| ...+++|++|+|++|......+....+++|++|+| ++.+. +.+...+..+++|+.|
T Consensus 178 ~~L~~L~Ls~n~l-~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 178 GELKHLAISGNKI-SGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS--GDFSRAISTCTELKLL 252 (768)
T ss_dssp TTCCEEECCSSEE-ESCCB--CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCC--SCHHHHTTTCSSCCEE
T ss_pred CCCCEEECCCCcc-cccCC--cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCC--CcccHHHhcCCCCCEE
Confidence 4677777744321 11111 25678899999998866554455778899999999 77664 3456677889999999
Q ss_pred EeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEe-cCCceeEEEeeeeec---eEEeecCCCeeEEEEE
Q 044491 215 SIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIA-TPNLELLNIHDFCMV---SYMFHELPPFTKVFID 288 (460)
Q Consensus 215 ~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~p~L~~L~l~~~~~~---~~~~~~~p~L~~l~l~ 288 (460)
++.+|...+..... ..++|+.|.+.+|... +........ +++|++|+++++... ...+.++++|+.+++.
T Consensus 253 ~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~---~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 253 NISSNQFVGPIPPL-PLKSLQYLSLAENKFT---GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp ECCSSCCEESCCCC-CCTTCCEEECCSSEEE---ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred ECCCCcccCccCcc-ccCCCCEEECcCCccC---CccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence 99998753221111 4568888888777411 111111112 377888888776542 1234567777777763
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.79 E-value=1.2e-09 Score=109.47 Aligned_cols=63 Identities=13% Similarity=0.230 Sum_probs=35.4
Q ss_pred HhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 306 LLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 306 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
.+..+++|+.|+++.+.+.... ...+..+++|+.|+| .+. ... ..+..+..+++|+.|+|.++
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIE---GSMLHELLRLQEIQLVGGQ-LAV-VEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEEC---TTSCTTCTTCCEEECCSSC-CSE-ECTTTBTTCTTCCEEECCSS
T ss_pred HhcCccccCeeECCCCcCCccC---hhhccccccCCEEECCCCc-cce-ECHHHhcCcccCCEEECCCC
Confidence 4566777777777765443221 122455677777777 221 111 12234566778888877764
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.79 E-value=1.1e-09 Score=109.03 Aligned_cols=83 Identities=16% Similarity=0.016 Sum_probs=37.9
Q ss_pred CceEEEEEeccCcceecCCccccCCcccEEEeceeeeecc-CC--CcccCCCCcEEEE-EEEECCCccHHHHhccCCccc
Q 044491 137 NVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKI-PP--SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALE 212 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~-~~--~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 212 (460)
++++|++..... ....|..+..+++|++|+|++|..... +. .+..+++|++|+| ++.+.+ ..-..++..+++|+
T Consensus 80 ~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 80 SLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASFFLNMRRFH 157 (455)
T ss_dssp TCCEEECTTCTT-CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS-CCCCGGGGGCTTCC
T ss_pred cCCEEeCCCCcc-CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc-cCcccccCCCCccc
Confidence 455555533321 112244444555666666665533221 11 1345556666666 444332 11122345556666
Q ss_pred ceEeeeccC
Q 044491 213 DLSIGHLDD 221 (460)
Q Consensus 213 ~L~L~~c~~ 221 (460)
+|++.++..
T Consensus 158 ~L~L~~n~l 166 (455)
T 3v47_A 158 VLDLTFNKV 166 (455)
T ss_dssp EEECTTCCB
T ss_pred EEeCCCCcc
Confidence 666655543
No 30
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.79 E-value=7.3e-10 Score=111.19 Aligned_cols=102 Identities=8% Similarity=0.028 Sum_probs=53.9
Q ss_pred cCCceeEEEeeeeec---eEEeecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccC
Q 044491 258 TPNLELLNIHDFCMV---SYMFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVF 334 (460)
Q Consensus 258 ~p~L~~L~l~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~ 334 (460)
.|+|+.|.++++... ...+.++++|+.+++.... . .+.....+...+++|+.|.++.+.+..... .
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-----l-~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-----~ 187 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-----I-DTVNFAELAASSDTLEHLNLQYNFIYDVKG-----Q 187 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-----C-CEEEGGGGGGGTTTCCEEECTTSCCCEEEC-----C
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-----C-CCcChHHHhhhCCcccEEecCCCccccccc-----c
Confidence 355666666555431 1233455666665552111 0 001122334467788888887765543311 2
Q ss_pred CCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 335 PKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 335 ~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
..+++|+.|+| .+. . .+++.-+..+++|+.|+++++
T Consensus 188 ~~l~~L~~L~Ls~N~-l--~~~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 188 VVFAKLKTLDLSSNK-L--AFMGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp CCCTTCCEEECCSSC-C--CEECGGGGGGTTCSEEECTTS
T ss_pred ccCCCCCEEECCCCC-C--CCCCHhHcCCCCccEEEecCC
Confidence 34677888888 322 1 123333667788888888775
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.79 E-value=5.5e-10 Score=111.16 Aligned_cols=221 Identities=16% Similarity=0.124 Sum_probs=103.0
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccC-CCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccc
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIP-PSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALED 213 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 213 (460)
.+++.|++..... ....|..+..+++|+.|+|+++.....+ ..+..+++|++|+| ++.+. ..-...+..+++|+.
T Consensus 75 ~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNI-QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT--VIPSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS--BCCTTTSSSCTTCCE
T ss_pred CCccEEECcCCcC-ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC--ccChhhhcccCCCCE
Confidence 3566666644432 1122344556677777777776544443 23446677777777 54433 112234556677777
Q ss_pred eEeeeccCCCceeEEE-eccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeece-EEeecCCCeeEEEEEEEe
Q 044491 214 LSIGHLDDKSLINFNI-SSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVS-YMFHELPPFTKVFIDIFY 291 (460)
Q Consensus 214 L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~-~~~~~~p~L~~l~l~~~~ 291 (460)
|+|.++....+..-.+ ..++|+.|.+.+|....... .......++|++|+++++.... ..+..+++|+.+++....
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS--EGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH 229 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC--TTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC--hhhccCCCCCCEEECCCCcccccccccccccccEEECcCCc
Confidence 7777665321110000 12566666666543111100 0001124566666666654322 123445556655552111
Q ss_pred cCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEE
Q 044491 292 DDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVF 370 (460)
Q Consensus 292 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I 370 (460)
. . ......+..+++|+.|.++.+.+... .+..+..+++|+.|+| .+. .. ......+..+++|+.|++
T Consensus 230 l--~-----~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~-l~-~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 230 F--P-----EIRPGSFHGLSSLKKLWVMNSQVSLI---ERNAFDGLASLVELNLAHNN-LS-SLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp C--S-----EECGGGGTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECCSSC-CS-CCCTTSSTTCTTCCEEEC
T ss_pred C--c-----ccCcccccCccCCCEEEeCCCcCceE---CHHHhcCCCCCCEEECCCCc-CC-ccChHHhccccCCCEEEc
Confidence 0 0 11123345566666666665433221 1112444556666666 221 11 011223455666666666
Q ss_pred eec
Q 044491 371 EKK 373 (460)
Q Consensus 371 ~~~ 373 (460)
++.
T Consensus 298 ~~N 300 (452)
T 3zyi_A 298 HHN 300 (452)
T ss_dssp CSS
T ss_pred cCC
Confidence 654
No 32
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.75 E-value=2.7e-09 Score=71.51 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=33.9
Q ss_pred ccccCCCChHHHHHHhcCCcchheeecccchhhhHhhcc
Q 044491 16 EDRISQLPDGILCHILSFLPIKCALATCILSSRWKFVWT 54 (460)
Q Consensus 16 ~D~is~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw~ 54 (460)
.+.++.||+|++.+||++|+.+|+++++.|||+|+.+..
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 456899999999999999999999999999999998643
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.75 E-value=1.8e-09 Score=108.10 Aligned_cols=221 Identities=16% Similarity=0.131 Sum_probs=124.5
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccC-CCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccc
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIP-PSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALED 213 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 213 (460)
.++++|++..... ....+..+..+++|+.|+|+++...... ..+..+++|++|+| .+.+.+ .....+..+++|+.
T Consensus 104 ~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 104 SNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS--IPTEALSHLHGLIV 180 (477)
T ss_dssp TTCCEEECTTSCC-CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS--CCHHHHTTCTTCCE
T ss_pred CCCCEEECCCCcc-ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc--cChhHhcccCCCcE
Confidence 3566666643321 1223344556677777777766443332 24456777777777 654432 22345667777777
Q ss_pred eEeeeccCCCceeEEE-eccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceE---EeecCCCeeEEEEEE
Q 044491 214 LSIGHLDDKSLINFNI-SSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSY---MFHELPPFTKVFIDI 289 (460)
Q Consensus 214 L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~ 289 (460)
|.+.++...+.....+ ..++|+.|.+.+|...... .......++|++|+++++..... .+..+++|+.+++..
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM---TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE---CTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCcccccc---CcccccCccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 7777775432211111 2357888888776421110 00011234788888887754332 245778888887742
Q ss_pred EecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeE
Q 044491 290 FYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEF 368 (460)
Q Consensus 290 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L 368 (460)
... . ......+..+++|+.|.++.+.+... .+..+..+++|+.|+| .+.-... ....+..+++|++|
T Consensus 258 n~l--~-----~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L 325 (477)
T 2id5_A 258 NPI--S-----TIEGSMLHELLRLQEIQLVGGQLAVV---EPYAFRGLNYLRVLNVSGNQLTTL--EESVFHSVGNLETL 325 (477)
T ss_dssp SCC--C-----EECTTSCTTCTTCCEEECCSSCCSEE---CTTTBTTCTTCCEEECCSSCCSCC--CGGGBSCGGGCCEE
T ss_pred CcC--C-----ccChhhccccccCCEEECCCCccceE---CHHHhcCcccCCEEECCCCcCcee--CHhHcCCCcccCEE
Confidence 210 0 11123356788999999988654332 1223567788999999 4321111 22456778899999
Q ss_pred EEeecc
Q 044491 369 VFEKKL 374 (460)
Q Consensus 369 ~I~~~~ 374 (460)
++.+.+
T Consensus 326 ~l~~N~ 331 (477)
T 2id5_A 326 ILDSNP 331 (477)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 998753
No 34
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.74 E-value=4.8e-11 Score=119.05 Aligned_cols=234 Identities=14% Similarity=0.069 Sum_probs=135.6
Q ss_pred CceEEEEEeccCcc---eecCCccccCCcccEEEeceeeeeccCCC------cccCCCCcEEEE-EEEECCCc--cHHHH
Q 044491 137 NVCEIELFLGSHKL---VRLPESICTLKTLEVLKLYSDFVIKIPPS------GLCFRSLKVLTV-VLEYPDNN--LTERL 204 (460)
Q Consensus 137 ~l~~L~l~~~~~~~---~~lp~~l~~~~~L~~L~L~~~~~~~~~~~------~~~l~~L~~L~L-~~~~~~~~--~l~~l 204 (460)
++++|++..+.... ..++..+..+++|++|+|+++...+..+. ....++|++|+| ++.+.+.. .+...
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 58888885543221 34566677788999999988854321111 112457999999 77665322 34566
Q ss_pred hccCCcccceEeeeccCCCceeEEE------eccccceEEEEeecCccccC-CceeEEEecCCceeEEEeeeeeceE---
Q 044491 205 FSICPALEDLSIGHLDDKSLINFNI------SSTTLKRLCLSFTNGVAYSN-NWHKVMIATPNLELLNIHDFCMVSY--- 274 (460)
Q Consensus 205 ~~~cp~Le~L~L~~c~~~~~~~~~i------~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~p~L~~L~l~~~~~~~~--- 274 (460)
+..|++|++|++.+|...+.....+ ..++|+.|.+.+|.-..... .+......+++|+.|+++++.....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 7778999999999886432111111 13488888888874110000 0011112468899999988753211
Q ss_pred -----EeecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhh--hccccCCCCCceeEEEE-E
Q 044491 275 -----MFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDK--IYKDVFPKFPNVTCLAV-K 346 (460)
Q Consensus 275 -----~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~--~~~~~~~~~~~L~~L~L-~ 346 (460)
.....++|+.+++..+.. .......+...+..++++++|+++.+.+...+. .........++|+.|++ .
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l---~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGI---TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCC---CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHhcCCCCceEEECcCCCC---CHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 122477888887742220 000001245566778899999998865532211 11111223458888888 4
Q ss_pred Eec--cCcccHHHHHhcCCCCCeEEEeec
Q 044491 347 VEL--FGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 347 ~~~--~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
|.- .....+...+..+++|++|+++++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 432 222346777788888998888876
No 35
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.73 E-value=6.9e-10 Score=111.35 Aligned_cols=206 Identities=15% Similarity=0.143 Sum_probs=100.1
Q ss_pred CceEEEEEeccCcceec-CCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 137 NVCEIELFLGSHKLVRL-PESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
++++|++..... ..+ |..+..+++|++|+|++|.....++ +..+++|++|+| ++.+.+ +...|.|+.|
T Consensus 35 ~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-------l~~~~~L~~L 104 (487)
T 3oja_A 35 NVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-------LLVGPSIETL 104 (487)
T ss_dssp GCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-------EEECTTCCEE
T ss_pred CccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-------CCCCCCcCEE
Confidence 566776654432 222 3345566777777777775443323 566777777777 554432 1123667777
Q ss_pred EeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceEE---e-ecCCCeeEEEEEEE
Q 044491 215 SIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYM---F-HELPPFTKVFIDIF 290 (460)
Q Consensus 215 ~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~-~~~p~L~~l~l~~~ 290 (460)
.+.+|...+... ...++|+.|.+.++.-. +.........++|+.|+++++...... + ..+++|+.+++...
T Consensus 105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 105 HAANNNISRVSC--SRGQGKKNIYLANNKIT---MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp ECCSSCCCCEEE--CCCSSCEEEECCSSCCC---SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred ECcCCcCCCCCc--cccCCCCEEECCCCCCC---CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 777765443221 12356667766666411 110111123566666666665442222 1 14566666655211
Q ss_pred ecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEE
Q 044491 291 YDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFV 369 (460)
Q Consensus 291 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~ 369 (460)
.. .. . .....+++|+.|.++.+.+...+.. +..+++|+.|++ .+. ..+++..+..+|+|+.|+
T Consensus 180 ~l--~~------~-~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~l~~L~~L~Ls~N~---l~~lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 180 FI--YD------V-KGQVVFAKLKTLDLSSNKLAFMGPE----FQSAAGVTWISLRNNK---LVLIEKALRFSQNLEHFD 243 (487)
T ss_dssp CC--CE------E-ECCCCCTTCCEEECCSSCCCEECGG----GGGGTTCSEEECTTSC---CCEECTTCCCCTTCCEEE
T ss_pred cc--cc------c-cccccCCCCCEEECCCCCCCCCCHh----HcCCCCccEEEecCCc---CcccchhhccCCCCCEEE
Confidence 10 00 0 0011355666666666444322111 233455666666 221 112333345556666666
Q ss_pred Eeec
Q 044491 370 FEKK 373 (460)
Q Consensus 370 I~~~ 373 (460)
+.++
T Consensus 244 l~~N 247 (487)
T 3oja_A 244 LRGN 247 (487)
T ss_dssp CTTC
T ss_pred cCCC
Confidence 6554
No 36
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=8.9e-10 Score=117.31 Aligned_cols=220 Identities=13% Similarity=0.097 Sum_probs=137.2
Q ss_pred cCceEEEEEeccCcceecCC--ccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCc-c
Q 044491 136 RNVCEIELFLGSHKLVRLPE--SICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPA-L 211 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~-L 211 (460)
.++++|++..+... .+|. .+..+++|+.|+|+++..... |.+..+++|+.|+| .+.+. .+..-+..++. |
T Consensus 548 ~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~l-p~~~~L~~L~~L~Ls~N~l~---~lp~~l~~l~~~L 621 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHL-EAFGTNVKLTDLKLDYNQIE---EIPEDFCAFTDQV 621 (876)
T ss_dssp TTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBC-CCCCTTSEESEEECCSSCCS---CCCTTSCEECTTC
T ss_pred CCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccc-hhhcCCCcceEEECcCCccc---cchHHHhhccccC
Confidence 37999999766542 7888 788899999999999976655 47778999999999 76654 23344777888 9
Q ss_pred cceEeeeccCCCceeEEE--eccccceEEEEeecCccccCCceeEE-----EecCCceeEEEeeeeeceEE---eecCCC
Q 044491 212 EDLSIGHLDDKSLINFNI--SSTTLKRLCLSFTNGVAYSNNWHKVM-----IATPNLELLNIHDFCMVSYM---FHELPP 281 (460)
Q Consensus 212 e~L~L~~c~~~~~~~~~i--~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~p~L~~L~l~~~~~~~~~---~~~~p~ 281 (460)
+.|.|.+|....+..... ..++|+.|.+.++.. .+....+. ...++|+.|+++++...... +..+++
T Consensus 622 ~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l---~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~ 698 (876)
T 4ecn_A 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI---GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698 (876)
T ss_dssp CEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCT---TTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCC
T ss_pred CEEECcCCCCCcCchhhhccccCCCCEEECcCCcC---CCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCC
Confidence 999999997653322111 113488888888752 11111111 13458889998887653222 236788
Q ss_pred eeEEEEEEEecCCcccccc--ccHHHHhhcCcceeEEEEeccchhhhhhhccccCC--CCCceeEEEE-EEeccCcccHH
Q 044491 282 FTKVFIDIFYDDGWSWVQS--GRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFP--KFPNVTCLAV-KVELFGWRLLP 356 (460)
Q Consensus 282 L~~l~l~~~~~~~~~~~~~--~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~--~~~~L~~L~L-~~~~~~~~~l~ 356 (460)
|+.+++...... ..... ......+..+++|+.|.++.+.+..++.. .. .+++|+.|+| .+. .. +++
T Consensus 699 L~~L~Ls~N~L~--~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~----l~~~~l~~L~~L~Ls~N~-L~--~lp 769 (876)
T 4ecn_A 699 ISTIILSNNLMT--SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD----FRATTLPYLSNMDVSYNC-FS--SFP 769 (876)
T ss_dssp CSEEECCSCCCS--CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG----GSTTTCTTCCEEECCSSC-CS--SCC
T ss_pred CCEEECCCCcCC--ccChHHhccccccccccCCccEEECCCCCCccchHH----hhhccCCCcCEEEeCCCC-CC--ccc
Confidence 888877432211 11000 00000123345888888888655433221 32 6778888888 332 21 245
Q ss_pred HHHhcCCCCCeEEEeec
Q 044491 357 IILSSLPNLEEFVFEKK 373 (460)
Q Consensus 357 ~~l~~~p~L~~L~I~~~ 373 (460)
.-+.++++|+.|+++.+
T Consensus 770 ~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 770 TQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp CGGGGCTTCCEEECCCC
T ss_pred hhhhcCCCCCEEECCCC
Confidence 55667888888888764
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.71 E-value=6.2e-09 Score=103.52 Aligned_cols=58 Identities=16% Similarity=0.012 Sum_probs=25.0
Q ss_pred cccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccC
Q 044491 157 ICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDD 221 (460)
Q Consensus 157 l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 221 (460)
+..+++|++|+|+++..... + ...+++|++|+| ++.+.+- . +..+++|+.|++.++..
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~-~-~~~l~~L~~L~Ls~N~l~~~---~--~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTL-D-LSQNTNLTYLACDSNKLTNL---D--VTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSCCSCC---C--CTTCTTCCEEECCSSCC
T ss_pred hcccCCCCEEEccCCcCCeE-c-cccCCCCCEEECcCCCCcee---e--cCCCCcCCEEECCCCcC
Confidence 34444555555555433222 1 334445555555 4433321 0 33444555555544443
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.70 E-value=3.7e-08 Score=105.69 Aligned_cols=104 Identities=20% Similarity=0.136 Sum_probs=51.5
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCC-CcccCCCCcEEEE-EEEECCCccHHHHhccCCcccc
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALED 213 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 213 (460)
.++++|++..... ....|..+..+++|+.|+|+++.....++ .+..+++|++|+| .+.+.. .....+..+|+|+.
T Consensus 266 ~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 266 SSVRHLDLSHGFV-FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE--LYSSNFYGLPKVAY 342 (844)
T ss_dssp SCCCEEECTTCCC-CEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC--CCSCSCSSCTTCCE
T ss_pred CCccEEECCCCcc-cccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc--cCHHHhcCCCCCCE
Confidence 4667777643321 11223444456677777777664443322 3446666777777 554431 11233445666666
Q ss_pred eEeeeccCCCceeEEE-eccccceEEEEee
Q 044491 214 LSIGHLDDKSLINFNI-SSTTLKRLCLSFT 242 (460)
Q Consensus 214 L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~ 242 (460)
|++.++.......-.+ ..++|+.|.+.++
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCC
Confidence 6666654432221111 1245555555555
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.69 E-value=2.9e-08 Score=95.25 Aligned_cols=114 Identities=17% Similarity=0.154 Sum_probs=72.4
Q ss_pred ceecCCccccCCcccEEEeceeeeeccCC-CcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeE
Q 044491 150 LVRLPESICTLKTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINF 227 (460)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~ 227 (460)
...+|..+. ++|++|+|+++.....++ .+..+++|++|+| ++.+. +.....+..+++|++|++.++...+...-
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN--TIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC--ccCHhhcCCCCCCCEEECCCCcCCcCCHh
Confidence 445666443 589999999997666644 5678999999999 66543 22234567899999999999876543221
Q ss_pred EE-eccccceEEEEeecCccccCCceeEEEecCCceeEEEeee
Q 044491 228 NI-SSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDF 269 (460)
Q Consensus 228 ~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 269 (460)
.+ ..++|+.|.+.++.-..... .......++|++|+++++
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~l~~--~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYKTLGE--TSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp HHTTCTTCSEEECTTCCCSSSCS--SCSCTTCTTCCEEEEEES
T ss_pred HhCCCccCCEEECCCCCCcccCc--hhhhccCCCCcEEECCCC
Confidence 11 23577888777764111100 011224567777777765
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.69 E-value=1.1e-09 Score=108.68 Aligned_cols=219 Identities=15% Similarity=0.168 Sum_probs=98.5
Q ss_pred CceEEEEEeccCcceec-CCccccCCcccEEEeceeeeeccCC-CcccCCCCcEEEE-EEEECCCccHHHHhccCCcccc
Q 044491 137 NVCEIELFLGSHKLVRL-PESICTLKTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALED 213 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 213 (460)
+++.|++.... ...+ +..+..+++|+.|+|+++.....++ .+..+++|++|+| ++.+.. .-...+..+++|+.
T Consensus 65 ~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 65 NTRLLNLHENQ--IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT--IPNGAFVYLSKLKE 140 (440)
T ss_dssp TCSEEECCSCC--CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS--CCTTTSCSCSSCCE
T ss_pred CCcEEEccCCc--CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe--eCHhHhhccccCce
Confidence 55566554333 1222 2334455666666666664433322 2345666666666 544331 11223455666666
Q ss_pred eEeeeccCCCceeEEE-eccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceE-EeecCCCeeEEEEEEEe
Q 044491 214 LSIGHLDDKSLINFNI-SSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSY-MFHELPPFTKVFIDIFY 291 (460)
Q Consensus 214 L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~p~L~~l~l~~~~ 291 (460)
|+|.++....+....+ ..++|+.|.+.++....... .......++|++|+++++..... .+..+++|+.+++....
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS--EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH 218 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC--TTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC--cchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCc
Confidence 6666664321110000 12456666665542111000 00001245666666666543211 23445556555552111
Q ss_pred cCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEE
Q 044491 292 DDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVF 370 (460)
Q Consensus 292 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I 370 (460)
. . ......+..+++|+.|.++.+.+.... ...+..+++|+.|+| .+.-.. .....+..+++|+.|++
T Consensus 219 l--~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 219 L--S-----AIRPGSFQGLMHLQKLWMIQSQIQVIE---RNAFDNLQSLVEINLAHNNLTL--LPHDLFTPLHHLERIHL 286 (440)
T ss_dssp C--C-----EECTTTTTTCTTCCEEECTTCCCCEEC---TTSSTTCTTCCEEECTTSCCCC--CCTTTTSSCTTCCEEEC
T ss_pred c--C-----ccChhhhccCccCCEEECCCCceeEEC---hhhhcCCCCCCEEECCCCCCCc--cChhHhccccCCCEEEc
Confidence 0 0 011223455666666666664432221 122445566666666 321111 11233455667777776
Q ss_pred eec
Q 044491 371 EKK 373 (460)
Q Consensus 371 ~~~ 373 (460)
++.
T Consensus 287 ~~N 289 (440)
T 3zyj_A 287 HHN 289 (440)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 41
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.69 E-value=3.3e-09 Score=110.08 Aligned_cols=221 Identities=12% Similarity=0.080 Sum_probs=136.6
Q ss_pred cCceEEEEEeccCcce----------------ecCCccc--cCCcccEEEeceeeee-ccCCCcccCCCCcEEEE-EEE-
Q 044491 136 RNVCEIELFLGSHKLV----------------RLPESIC--TLKTLEVLKLYSDFVI-KIPPSGLCFRSLKVLTV-VLE- 194 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~----------------~lp~~l~--~~~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~L-~~~- 194 (460)
.++++|++........ .+|..+. .+++|++|+|++|... ..|..+..+++|++|+| .+.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 4799999976653110 1898888 9999999999999543 44556778999999999 775
Q ss_pred ECC---CccHHHH--hccCCcccceEeeeccCCCcee--EEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEe
Q 044491 195 YPD---NNLTERL--FSICPALEDLSIGHLDDKSLIN--FNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIH 267 (460)
Q Consensus 195 ~~~---~~~l~~l--~~~cp~Le~L~L~~c~~~~~~~--~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 267 (460)
+.+ +..+..+ +..+++|+.|.+.+|....+.. .--..++|+.|.+.++.. .+.+. .....++|+.|+++
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l---~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL---EGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCC---EEECC-CCEEEEEESEEECC
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcC---ccchh-hhCCCCCCCEEECC
Confidence 431 1222222 2346999999999997653322 111236899999988752 21222 23456889999998
Q ss_pred eeeeceE--EeecCCC-eeEEEEEEEecCCccccccccHHHHhhc--CcceeEEEEeccchhhhhhhccccCC-------
Q 044491 268 DFCMVSY--MFHELPP-FTKVFIDIFYDDGWSWVQSGRAQRLLNS--LTKAKFLALSADTVYALDKIYKDVFP------- 335 (460)
Q Consensus 268 ~~~~~~~--~~~~~p~-L~~l~l~~~~~~~~~~~~~~~~~~~l~~--l~~l~~L~l~~~~~~~~~~~~~~~~~------- 335 (460)
++..... .+..+++ |+.+++..... ..+...+.. +++++.|.++.+.+.... +..++
T Consensus 362 ~N~l~~lp~~l~~l~~~L~~L~Ls~N~l--------~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~~~~~~~ 430 (636)
T 4eco_A 362 YNQITEIPANFCGFTEQVENLSFAHNKL--------KYIPNIFDAKSVSVMSAIDFSYNEIGSVD---GKNFDPLDPTPF 430 (636)
T ss_dssp SSEEEECCTTSEEECTTCCEEECCSSCC--------SSCCSCCCTTCSSCEEEEECCSSCTTTTT---TCSSCTTCSSCC
T ss_pred CCccccccHhhhhhcccCcEEEccCCcC--------cccchhhhhcccCccCEEECcCCcCCCcc---hhhhcccccccc
Confidence 8755321 2456677 88877743221 011112222 347888888886543211 11122
Q ss_pred CCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 336 KFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 336 ~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
.+++|+.|++ .+. .. .....++..+++|+.|++.++
T Consensus 431 ~~~~L~~L~Ls~N~-l~-~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 431 KGINVSSINLSNNQ-IS-KFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CCCCEEEEECCSSC-CC-SCCTHHHHTTCCCSEEECCSS
T ss_pred cCCCCCEEECcCCc-cC-cCCHHHHccCCCCCEEECCCC
Confidence 4567888888 332 22 123345667888888888775
No 42
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.68 E-value=7.7e-10 Score=104.61 Aligned_cols=148 Identities=13% Similarity=0.126 Sum_probs=74.7
Q ss_pred hhhHHHHHHHh--cCceEEEEEeccCcceecC-CccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCcc
Q 044491 125 RFRSWVDSIIM--RNVCEIELFLGSHKLVRLP-ESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNL 200 (460)
Q Consensus 125 ~~~~wi~~~~~--~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~ 200 (460)
.+...+..... .++++|++..... ..++ ..+..+++|+.|+|+++.....++ +..+++|++|+| ++.+.+
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~--- 94 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE--- 94 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE---
T ss_pred chhhhHHHHhccCCCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc---
Confidence 34444443332 3677777744331 2222 344566777777777775444322 566777777777 554432
Q ss_pred HHHHhccCCcccceEeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceEEe----
Q 044491 201 TERLFSICPALEDLSIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYMF---- 276 (460)
Q Consensus 201 l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~---- 276 (460)
+..++.|+.|.+.++...+.. ....++|+.|.+.++.-.... .......++|+.|+++++.......
T Consensus 95 ----l~~~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~N~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 95 ----LLVGPSIETLHAANNNISRVS--CSRGQGKKNIYLANNKITMLR---DLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp ----EEECTTCCEEECCSSCCSEEE--ECCCSSCEEEECCSSCCCSGG---GBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred ----ccCCCCcCEEECCCCccCCcC--ccccCCCCEEECCCCCCCCcc---chhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 123467777777776543211 112356666666666411110 1111234666666666654422221
Q ss_pred ecCCCeeEEEE
Q 044491 277 HELPPFTKVFI 287 (460)
Q Consensus 277 ~~~p~L~~l~l 287 (460)
..+++|+.+++
T Consensus 166 ~~l~~L~~L~L 176 (317)
T 3o53_A 166 ASSDTLEHLNL 176 (317)
T ss_dssp GGTTTCCEEEC
T ss_pred hccCcCCEEEC
Confidence 23456666555
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.68 E-value=9.8e-10 Score=113.31 Aligned_cols=213 Identities=16% Similarity=0.107 Sum_probs=132.3
Q ss_pred cCceEEEEEeccCcceecC-CccccCCcccEEEeceeeeeccCCC-cccCCCCcEEEE-EEEECCCccHHHHhccCCccc
Q 044491 136 RNVCEIELFLGSHKLVRLP-ESICTLKTLEVLKLYSDFVIKIPPS-GLCFRSLKVLTV-VLEYPDNNLTERLFSICPALE 212 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 212 (460)
.+++.|++.... ...++ ..+..+++|++|+|++|.....++. +..+++|++|+| ++.+.. .-..++..+++|+
T Consensus 75 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~ 150 (597)
T 3oja_B 75 RQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLT 150 (597)
T ss_dssp CCCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCC
T ss_pred CCCcEEECCCCC--CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC--CCHHHhccCCCCC
Confidence 579999986554 23344 4667889999999999976666554 468999999999 776542 2234568899999
Q ss_pred ceEeeeccCCCceeEEE-eccccceEEEEeecCccccCCceeEEEecCCceeEEEeee-------------------eec
Q 044491 213 DLSIGHLDDKSLINFNI-SSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDF-------------------CMV 272 (460)
Q Consensus 213 ~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~-------------------~~~ 272 (460)
.|.|.+|...+...-.+ ..++|+.|.+.++...... ....|+|+.|.++++ ...
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD------LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 224 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC------GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC------hhhhhhhhhhhcccCccccccCCchhheeeccCCccc
Confidence 99999987643322112 2368999998887521110 112345555555443 322
Q ss_pred eEEeecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccC
Q 044491 273 SYMFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFG 351 (460)
Q Consensus 273 ~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~ 351 (460)
.......++|+.+.+..... .-...+..+++|+.|.++.+.+... .+..+..+++|+.|+| .+.
T Consensus 225 ~~~~~~~~~L~~L~L~~n~l---------~~~~~l~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N~--- 289 (597)
T 3oja_B 225 VVRGPVNVELTILKLQHNNL---------TDTAWLLNYPGLVEVDLSYNELEKI---MYHPFVKMQRLERLYISNNR--- 289 (597)
T ss_dssp EEECSCCSCCCEEECCSSCC---------CCCGGGGGCTTCSEEECCSSCCCEE---ESGGGTTCSSCCEEECTTSC---
T ss_pred ccccccCCCCCEEECCCCCC---------CCChhhccCCCCCEEECCCCccCCC---CHHHhcCccCCCEEECCCCC---
Confidence 22222233455544422210 0124567889999999988655332 2223567788999999 432
Q ss_pred cccHHHHHhcCCCCCeEEEeec
Q 044491 352 WRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 352 ~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
..+++.....+|+|+.|++.++
T Consensus 290 l~~l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 290 LVALNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp CCEEECSSSCCTTCCEEECCSS
T ss_pred CCCCCcccccCCCCcEEECCCC
Confidence 2223444567899999999887
No 44
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.67 E-value=2.9e-10 Score=110.72 Aligned_cols=85 Identities=21% Similarity=0.175 Sum_probs=43.0
Q ss_pred cCceEEEEEeccCc---ceecCCccccCCcccEEEeceeeeecc----CCC-------cccCCCCcEEEE-EEEECCCc-
Q 044491 136 RNVCEIELFLGSHK---LVRLPESICTLKTLEVLKLYSDFVIKI----PPS-------GLCFRSLKVLTV-VLEYPDNN- 199 (460)
Q Consensus 136 ~~l~~L~l~~~~~~---~~~lp~~l~~~~~L~~L~L~~~~~~~~----~~~-------~~~l~~L~~L~L-~~~~~~~~- 199 (460)
.++++|++..+... ...++..+..+++|++|+|++|..... |.. ...+++|++|+| ++.+.+.+
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 46677776433211 112333344567777777776522111 011 134566777777 55554311
Q ss_pred -cHHHHhccCCcccceEeeecc
Q 044491 200 -LTERLFSICPALEDLSIGHLD 220 (460)
Q Consensus 200 -~l~~l~~~cp~Le~L~L~~c~ 220 (460)
.+...+..|++|+.|.|.+|.
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSC
T ss_pred HHHHHHHHhCCCCCEEECcCCC
Confidence 233445566667777666664
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.67 E-value=3.8e-09 Score=109.05 Aligned_cols=123 Identities=14% Similarity=0.092 Sum_probs=67.0
Q ss_pred ccCCcccceEeeeccCCCceeEEE-eccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeee-ceEEeecCCCee
Q 044491 206 SICPALEDLSIGHLDDKSLINFNI-SSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCM-VSYMFHELPPFT 283 (460)
Q Consensus 206 ~~cp~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~-~~~~~~~~p~L~ 283 (460)
..+++|+.|.+.++....+. .+ ..++|+.|.+.+|.. +.+..+ ..|+|+.|+++++.. ....+..+++|+
T Consensus 282 ~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l----~~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~ 353 (606)
T 3vq2_A 282 HCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL----KQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLS 353 (606)
T ss_dssp GGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC----SSCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCC
T ss_pred ccCCCCCEEEecCccchhhh--hccccccCCEEEcccccC----cccccC--CCCccceeeccCCcCccchhhccCCCCC
Confidence 34556666666665543332 11 124788888888762 222323 778888888887733 234556778888
Q ss_pred EEEEEEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE
Q 044491 284 KVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV 345 (460)
Q Consensus 284 ~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 345 (460)
.+++..... .........+..+++++.|.++.+.+.... ..+..+++|+.|++
T Consensus 354 ~L~ls~n~l-----~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~l~~L~~L~l 406 (606)
T 3vq2_A 354 YLDLSRNAL-----SFSGCCSYSDLGTNSLRHLDLSFNGAIIMS----ANFMGLEELQHLDF 406 (606)
T ss_dssp EEECCSSCE-----EEEEECCHHHHCCSCCCEEECCSCSEEEEC----CCCTTCTTCCEEEC
T ss_pred EEECcCCcc-----CCCcchhhhhccCCcccEeECCCCccccch----hhccCCCCCCeeEC
Confidence 877732110 000112344566777777777665433222 12444556666666
No 46
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.66 E-value=6.6e-09 Score=107.28 Aligned_cols=223 Identities=17% Similarity=0.190 Sum_probs=127.6
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccC-CCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccc
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIP-PSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALED 213 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 213 (460)
.++++|++.... ...+|..+..+++|++|+|+++.....+ ..+..+++|++|++ ++.... ..-...+..+++|+.
T Consensus 278 ~~L~~L~l~~n~--l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 278 SGLQELDLTATH--LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL-ELGTGCLENLENLRE 354 (606)
T ss_dssp TTCSEEECTTSC--CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC-BCCSSTTTTCTTCCE
T ss_pred cCCCEEeccCCc--cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc-ccchhhhhccCcCCE
Confidence 356666664443 3367777777888888888888554442 35567888888888 664331 111234667888888
Q ss_pred eEeeeccCCCcee--EEE-eccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeece----EEeecCCCeeEEE
Q 044491 214 LSIGHLDDKSLIN--FNI-SSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVS----YMFHELPPFTKVF 286 (460)
Q Consensus 214 L~L~~c~~~~~~~--~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~----~~~~~~p~L~~l~ 286 (460)
|++.++...+... ..+ ..++|+.|.+.++.-.... ......+++|+.|+++++.... ..+..+++|+.++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK---TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC---TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC---HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 8888876432210 001 2357888888776411110 0011135788888887765421 1245677787777
Q ss_pred EEEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCC
Q 044491 287 IDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNL 365 (460)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L 365 (460)
+..... .......+..+++|+.|.++.+.+..........+..+++|+.|++ .+.-.+ ..+..+..+++|
T Consensus 432 l~~n~l-------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L 502 (606)
T 3t6q_A 432 LSHSLL-------DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS--IDQHAFTSLKMM 502 (606)
T ss_dssp CTTCCC-------BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE--ECTTTTTTCTTC
T ss_pred CCCCcc-------CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc--cChhhhccccCC
Confidence 632220 0112334566788888888776543211111122456778888888 432111 123456677888
Q ss_pred CeEEEeec
Q 044491 366 EEFVFEKK 373 (460)
Q Consensus 366 ~~L~I~~~ 373 (460)
++|+++++
T Consensus 503 ~~L~Ls~N 510 (606)
T 3t6q_A 503 NHVDLSHN 510 (606)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 88888775
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.66 E-value=1.7e-08 Score=103.73 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=12.3
Q ss_pred CcccEEEeceeeeeccCCCcccCCCCcEEEE
Q 044491 161 KTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV 191 (460)
Q Consensus 161 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L 191 (460)
++|++|+|++|.....+. .+++|++|+|
T Consensus 81 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp TTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 445555555443332211 3445555555
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.65 E-value=2e-09 Score=106.71 Aligned_cols=243 Identities=18% Similarity=0.170 Sum_probs=149.9
Q ss_pred ceecCCccccCCcccEEEeceeeeeccC-CCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeE
Q 044491 150 LVRLPESICTLKTLEVLKLYSDFVIKIP-PSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINF 227 (460)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~ 227 (460)
...+|..+. ++++.|+|+++.....+ ..+..+++|++|+| ++.+.+ .-...+.++++|++|+|.++....+..-
T Consensus 55 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 130 (440)
T 3zyj_A 55 LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT--IEIGAFNGLANLNTLELFDNRLTTIPNG 130 (440)
T ss_dssp CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE--ECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc--cChhhccCCccCCEEECCCCcCCeeCHh
Confidence 445666543 68999999999665553 45668999999999 765532 2235577899999999999976543221
Q ss_pred E-EeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceE----EeecCCCeeEEEEEEEecCCcccccccc
Q 044491 228 N-ISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSY----MFHELPPFTKVFIDIFYDDGWSWVQSGR 302 (460)
Q Consensus 228 ~-i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~----~~~~~p~L~~l~l~~~~~~~~~~~~~~~ 302 (460)
. ...++|+.|.+.++.-..... ......++|+.|+++++..... .+.++++|+.+++..... ..
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l--~~------ 199 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPS---YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--RE------ 199 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECT---TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC--SS------
T ss_pred HhhccccCceeeCCCCcccccCH---HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC--cc------
Confidence 1 123689999998875211110 0112468999999988543221 345678888887742221 11
Q ss_pred HHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeecccccccCc
Q 044491 303 AQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKKLSCHFEEF 381 (460)
Q Consensus 303 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~~~~~~~~~ 381 (460)
+ ..+..+++|+.|+++.+.+... .+..+..+++|+.|++ .+.-... ....+..+++|+.|++.++.-...
T Consensus 200 ~-~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~--- 270 (440)
T 3zyj_A 200 I-PNLTPLIKLDELDLSGNHLSAI---RPGSFQGLMHLQKLWMIQSQIQVI--ERNAFDNLQSLVEINLAHNNLTLL--- 270 (440)
T ss_dssp C-CCCTTCSSCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTCCCCEE--CTTSSTTCTTCCEEECTTSCCCCC---
T ss_pred c-cccCCCcccCEEECCCCccCcc---ChhhhccCccCCEEECCCCceeEE--ChhhhcCCCCCCEEECCCCCCCcc---
Confidence 1 1256788999999988655432 2233667889999999 3321111 234467789999999988521100
Q ss_pred ccccCCCCCcccccceeEEEEEe--ecCchhHHHHHHHHHhc
Q 044491 382 GWIEQPNIPLCLLLHVKKIEIKK--FEGQKDELGLVKYLLKN 421 (460)
Q Consensus 382 ~w~~~~~~~~~~~~~L~~v~i~~--~~~~~~~~~~~~~ll~~ 421 (460)
..... ...++|+.+.+.+ +........+..++-+.
T Consensus 271 ----~~~~~-~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~ 307 (440)
T 3zyj_A 271 ----PHDLF-TPLHHLERIHLHHNPWNCNCDILWLSWWIKDM 307 (440)
T ss_dssp ----CTTTT-SSCTTCCEEECCSSCEECSSTTHHHHHHHHTT
T ss_pred ----ChhHh-ccccCCCEEEcCCCCccCCCCchHHHHHHHhc
Confidence 00000 1236888888875 55555555666665544
No 49
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.64 E-value=2.8e-09 Score=113.18 Aligned_cols=63 Identities=24% Similarity=0.250 Sum_probs=28.4
Q ss_pred HhhcCcceeEEEEeccchh-hhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCC-CCCeEEEeec
Q 044491 306 LLNSLTKAKFLALSADTVY-ALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLP-NLEEFVFEKK 373 (460)
Q Consensus 306 ~l~~l~~l~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p-~L~~L~I~~~ 373 (460)
.+..+++|+.|.++.+.+. ..+ ...+..+++|+.|++ .+.-. . .++..+..++ +|++|++..+
T Consensus 313 ~~~~l~~L~~L~L~~n~l~~~ip---~~~l~~l~~L~~L~Ls~n~l~-~-~~p~~l~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 313 FFGSCSLLESLALSSNNFSGELP---MDTLLKMRGLKVLDLSFNEFS-G-ELPESLTNLSASLLTLDLSSN 378 (768)
T ss_dssp GGGGCTTCCEEECCSSEEEEECC---HHHHTTCTTCCEEECCSSEEE-E-CCCTTHHHHTTTCSEEECCSS
T ss_pred HHhcCCCccEEECCCCcccCcCC---HHHHhcCCCCCEEeCcCCccC-c-cccHHHHhhhcCCcEEEccCC
Confidence 3455566666666554332 111 011334566666666 22110 0 1222233333 7777777655
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.64 E-value=2.3e-09 Score=106.68 Aligned_cols=243 Identities=15% Similarity=0.129 Sum_probs=148.1
Q ss_pred ceecCCccccCCcccEEEeceeeeeccC-CCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeE
Q 044491 150 LVRLPESICTLKTLEVLKLYSDFVIKIP-PSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINF 227 (460)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~ 227 (460)
...+|..+. ++|+.|+|+++.....+ ..+..+++|++|+| ++.+. ......+.++++|+.|+|.++....+..-
T Consensus 66 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 141 (452)
T 3zyi_A 66 LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR--QIEVGAFNGLASLNTLELFDNWLTVIPSG 141 (452)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC--CcChhhccCcccCCEEECCCCcCCccChh
Confidence 445665443 68999999999665553 45668999999999 66553 22234577899999999999975432211
Q ss_pred EE-eccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceE----EeecCCCeeEEEEEEEecCCcccccccc
Q 044491 228 NI-SSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSY----MFHELPPFTKVFIDIFYDDGWSWVQSGR 302 (460)
Q Consensus 228 ~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~----~~~~~p~L~~l~l~~~~~~~~~~~~~~~ 302 (460)
.+ ..++|+.|.+.++.-..... ......|+|+.|+++++..... .+.++++|+.+++..... ..
T Consensus 142 ~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l--~~------ 210 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNPIESIPS---YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI--KD------ 210 (452)
T ss_dssp TSSSCTTCCEEECCSCCCCEECT---TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC--SS------
T ss_pred hhcccCCCCEEECCCCCcceeCH---hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc--cc------
Confidence 11 24689999998875211110 0112468999999988543222 245678888887742221 00
Q ss_pred HHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeecccccccCc
Q 044491 303 AQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKKLSCHFEEF 381 (460)
Q Consensus 303 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~~~~~~~~~ 381 (460)
+ ..+..+++|+.|+++.+.+... .+..+..+++|+.|++ .+.- .. .....+..+++|+.|++.++.-...
T Consensus 211 ~-~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L~~n~l-~~-~~~~~~~~l~~L~~L~L~~N~l~~~--- 281 (452)
T 3zyi_A 211 M-PNLTPLVGLEELEMSGNHFPEI---RPGSFHGLSSLKKLWVMNSQV-SL-IERNAFDGLASLVELNLAHNNLSSL--- 281 (452)
T ss_dssp C-CCCTTCTTCCEEECTTSCCSEE---CGGGGTTCTTCCEEECTTSCC-CE-ECTTTTTTCTTCCEEECCSSCCSCC---
T ss_pred c-ccccccccccEEECcCCcCccc---CcccccCccCCCEEEeCCCcC-ce-ECHHHhcCCCCCCEEECCCCcCCcc---
Confidence 1 1256788999999988655432 2223667889999998 3321 11 1234467789999999988511100
Q ss_pred ccccCCCCCcccccceeEEEEEe--ecCchhHHHHHHHHHhc
Q 044491 382 GWIEQPNIPLCLLLHVKKIEIKK--FEGQKDELGLVKYLLKN 421 (460)
Q Consensus 382 ~w~~~~~~~~~~~~~L~~v~i~~--~~~~~~~~~~~~~ll~~ 421 (460)
..... ...++|+.+.+.+ +........+..++-+.
T Consensus 282 ----~~~~~-~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~ 318 (452)
T 3zyi_A 282 ----PHDLF-TPLRYLVELHLHHNPWNCDCDILWLAWWLREY 318 (452)
T ss_dssp ----CTTSS-TTCTTCCEEECCSSCEECSTTTHHHHHHHHHH
T ss_pred ----ChHHh-ccccCCCEEEccCCCcCCCCCchHHHHHHHHh
Confidence 00001 1236788888875 55555555555555443
No 51
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.64 E-value=1.4e-09 Score=112.88 Aligned_cols=224 Identities=13% Similarity=0.113 Sum_probs=136.6
Q ss_pred cCceEEEEEeccCcceecCC--ccccCCcccEEEeceeeee-ccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCc-
Q 044491 136 RNVCEIELFLGSHKLVRLPE--SICTLKTLEVLKLYSDFVI-KIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPA- 210 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~- 210 (460)
.++++|++..+.. ..+|. .+..+++|+.|+|+++... .. |.+..+++|++|+| ++.+. .+..-+..++.
T Consensus 305 ~~L~~L~L~~n~l--~~ip~~~~l~~l~~L~~L~L~~N~l~g~i-p~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~~ 378 (636)
T 4eco_A 305 EKIQIIYIGYNNL--KTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQIT---EIPANFCGFTEQ 378 (636)
T ss_dssp GTCCEEECCSSCC--SSCCCHHHHTTCTTCCEEECCSCCCEEEC-CCCEEEEEESEEECCSSEEE---ECCTTSEEECTT
T ss_pred CCCCEEECCCCcC--CccCchhhhccCCCCCEEeCcCCcCccch-hhhCCCCCCCEEECCCCccc---cccHhhhhhccc
Confidence 5899999976654 27888 7888999999999999766 55 47778999999999 66554 23344777888
Q ss_pred ccceEeeeccCCCceeEEEe--ccccceEEEEeecCccccCC-c---eeEEEecCCceeEEEeeeeeceEE---eecCCC
Q 044491 211 LEDLSIGHLDDKSLINFNIS--STTLKRLCLSFTNGVAYSNN-W---HKVMIATPNLELLNIHDFCMVSYM---FHELPP 281 (460)
Q Consensus 211 Le~L~L~~c~~~~~~~~~i~--~~~L~~L~l~~~~~~~~~~~-~---~~~~~~~p~L~~L~l~~~~~~~~~---~~~~p~ 281 (460)
|+.|++.++....+...... .++|+.|.+.++........ + .......++|+.|+++++...... +..+++
T Consensus 379 L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~ 458 (636)
T 4eco_A 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458 (636)
T ss_dssp CCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCC
T ss_pred CcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCC
Confidence 99999999876543321111 23688888888752111000 0 011124568899999887653222 235788
Q ss_pred eeEEEEEEEecCCcccccc--ccHHHHhhcCcceeEEEEeccchhhhhhhccccC-CCCCceeEEEE-EEeccCcccHHH
Q 044491 282 FTKVFIDIFYDDGWSWVQS--GRAQRLLNSLTKAKFLALSADTVYALDKIYKDVF-PKFPNVTCLAV-KVELFGWRLLPI 357 (460)
Q Consensus 282 L~~l~l~~~~~~~~~~~~~--~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~-~~~~~L~~L~L-~~~~~~~~~l~~ 357 (460)
|+.+++...... ..... ......+..+++|+.|.++.+.+..++.. .. ..+++|+.|+| .+. .. +++.
T Consensus 459 L~~L~Ls~N~l~--~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~~~~~l~~L~~L~Ls~N~-l~--~ip~ 530 (636)
T 4eco_A 459 LSSINLMGNMLT--EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD---FRATTLPYLVGIDLSYNS-FS--KFPT 530 (636)
T ss_dssp CSEEECCSSCCS--BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGG---GSTTTCTTCCEEECCSSC-CS--SCCC
T ss_pred CCEEECCCCCCC--CcCHHHhccccccccccCCccEEECcCCcCCccChh---hhhccCCCcCEEECCCCC-CC--CcCh
Confidence 888777432210 00000 00000122334888888887655432221 11 26778888888 332 21 2445
Q ss_pred HHhcCCCCCeEEEeec
Q 044491 358 ILSSLPNLEEFVFEKK 373 (460)
Q Consensus 358 ~l~~~p~L~~L~I~~~ 373 (460)
-+.++++|++|++.++
T Consensus 531 ~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 531 QPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp GGGGCSSCCEEECCSC
T ss_pred hhhcCCCCCEEECCCC
Confidence 5667888888888654
No 52
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.64 E-value=1.2e-08 Score=95.94 Aligned_cols=186 Identities=15% Similarity=0.134 Sum_probs=129.1
Q ss_pred cCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEEeccccceE
Q 044491 159 TLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNISSTTLKRL 237 (460)
Q Consensus 159 ~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L 237 (460)
.+++|++|+++++..... +....+++|++|+| ++.+.+ +.. +..+++|+.|++.++...+...+ ...++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~---~~~-~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITD---LAP-LKNLTKITELELSGNPLKNVSAI-AGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCC---CGG-GTTCCSCCEEECCSCCCSCCGGG-TTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCC---Chh-HccCCCCCEEEccCCcCCCchhh-cCCCCCCEE
Confidence 467999999999966555 56778999999999 776654 223 78899999999999986654321 123689999
Q ss_pred EEEeecCccccCCceeEEEecCCceeEEEeeeeeceE-EeecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeEE
Q 044491 238 CLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSY-MFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFL 316 (460)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L 316 (460)
.+.+|.-. . ... ....++|+.|.++++..... .+..+++|+.+++..... ..+.. +..+++|+.|
T Consensus 113 ~l~~n~l~---~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l--------~~~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 113 DLTSTQIT---D-VTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV--------SDLTP-LANLSKLTTL 178 (308)
T ss_dssp ECTTSCCC---C-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC--------CCCGG-GTTCTTCCEE
T ss_pred ECCCCCCC---C-chh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcC--------CCChh-hcCCCCCCEE
Confidence 99888521 1 111 23468999999998765322 266788898888743221 11122 6788899999
Q ss_pred EEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 317 ALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 317 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
.++.+.+..... +..+++|++|++ .+.-.+. .. +..+|+|+.|++.++
T Consensus 179 ~l~~n~l~~~~~-----l~~l~~L~~L~L~~N~l~~~---~~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 179 KADDNKISDISP-----LASLPNLIEVHLKNNQISDV---SP-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp ECCSSCCCCCGG-----GGGCTTCCEEECTTSCCCBC---GG-GTTCTTCCEEEEEEE
T ss_pred ECCCCccCcChh-----hcCCCCCCEEEccCCccCcc---cc-ccCCCCCCEEEccCC
Confidence 998866544332 456788999999 4432222 22 678899999999886
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.63 E-value=1.8e-09 Score=102.70 Aligned_cols=217 Identities=13% Similarity=0.079 Sum_probs=135.0
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
.++++|++..... ....|..+..+++|++|+|+++.....+... +++|++|++ .+.+. ......+..+++|+.|
T Consensus 76 ~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~--~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 76 KNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEIT--KVRKSVFNGLNQMIVV 150 (330)
T ss_dssp TTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSCCC--BBCHHHHTTCTTCCEE
T ss_pred CCCCEEECCCCcC-CeeCHHHhcCCCCCCEEECCCCcCCccChhh--cccccEEECCCCccc--ccCHhHhcCCccccEE
Confidence 5788998865542 2223666778899999999998655553332 489999999 76554 2334567789999999
Q ss_pred EeeeccCCCceeE--EE-eccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceE---EeecCCCeeEEEEE
Q 044491 215 SIGHLDDKSLINF--NI-SSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSY---MFHELPPFTKVFID 288 (460)
Q Consensus 215 ~L~~c~~~~~~~~--~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~ 288 (460)
++.++........ .+ ..++|+.|.+.++.-...... ..++|+.|+++++..... .+..+++|+.+++.
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 224 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc------ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 9998865321110 11 236888888888752222111 127899999988765333 35678889888874
Q ss_pred EEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEec--cCcccHH--HHHhcCC
Q 044491 289 IFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVEL--FGWRLLP--IILSSLP 363 (460)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~--~~~~~l~--~~l~~~p 363 (460)
.... . ......+..+++|+.|.++.+.+...+. .+..+++|+.|++ .+.- .....+. ......+
T Consensus 225 ~n~l--~-----~~~~~~~~~l~~L~~L~L~~N~l~~lp~----~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 225 FNSI--S-----AVDNGSLANTPHLRELHLNNNKLVKVPG----GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp SSCC--C-----EECTTTGGGSTTCCEEECCSSCCSSCCT----TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred CCcC--c-----eeChhhccCCCCCCEEECCCCcCccCCh----hhccCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence 3220 0 0112245678999999999876553322 2556788999999 3321 1111111 1112357
Q ss_pred CCCeEEEeecc
Q 044491 364 NLEEFVFEKKL 374 (460)
Q Consensus 364 ~L~~L~I~~~~ 374 (460)
.|+.|++.+.+
T Consensus 294 ~l~~l~l~~N~ 304 (330)
T 1xku_A 294 SYSGVSLFSNP 304 (330)
T ss_dssp CCSEEECCSSS
T ss_pred cccceEeecCc
Confidence 88999888753
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.62 E-value=4.9e-09 Score=97.39 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=33.2
Q ss_pred hhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 307 LNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 307 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
+..+++|+.|.++.+.+... .+..+..+++|+.|++ .+. ... .....+..+++|+.|++.+.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHV---HPHAFRDLGRLMTLYLFANN-LSA-LPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEE---CTTTTTTCTTCCEEECCSSC-CSC-CCHHHHTTCTTCCEEECCSS
T ss_pred hcCccccCEEECCCCccccc---CHhHccCcccccEeeCCCCc-CCc-CCHHHcccCcccCEEeccCC
Confidence 44566777777766543222 1122445666777777 321 111 12344666777777777664
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.62 E-value=1.5e-08 Score=96.18 Aligned_cols=217 Identities=14% Similarity=0.129 Sum_probs=137.4
Q ss_pred cCceEEEEEeccCcceecCC-ccccCCcccEEEeceeeeecc-CCCcccCCCCcEEEE-EEEECCCccHHHHhccCCccc
Q 044491 136 RNVCEIELFLGSHKLVRLPE-SICTLKTLEVLKLYSDFVIKI-PPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALE 212 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 212 (460)
..++.|++.... ...++. .+..+++|++|+|+++..... +..+..+++|++|+| +..+.. +.. ..++.|+
T Consensus 52 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---l~~--~~~~~L~ 124 (330)
T 1xku_A 52 PDTALLDLQNNK--ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE---LPE--KMPKTLQ 124 (330)
T ss_dssp TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB---CCS--SCCTTCC
T ss_pred CCCeEEECCCCc--CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc---cCh--hhccccc
Confidence 478888886554 334444 566789999999999966555 345668999999999 665442 111 1237899
Q ss_pred ceEeeeccCCCceeEEE-eccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceEEeecCCCeeEEEEEEEe
Q 044491 213 DLSIGHLDDKSLINFNI-SSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYMFHELPPFTKVFIDIFY 291 (460)
Q Consensus 213 ~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~ 291 (460)
+|.+.++...+...-.+ ..++|+.|.+.++..... +.........++|+.|+++++........-.++|+.+++....
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~ 203 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK 203 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG-GBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSC
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcCCcc-CcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCc
Confidence 99999987543222111 236899999988752110 0001111246899999998876533333334788887773221
Q ss_pred cCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEE
Q 044491 292 DDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVF 370 (460)
Q Consensus 292 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I 370 (460)
.. ......+..+++|+.|.++.+.+..... ..+..+++|+.|++ .+. .. .++..+..+++|++|++
T Consensus 204 -----l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 204 -----IT--KVDAASLKGLNNLAKLGLSFNSISAVDN---GSLANTPHLRELHLNNNK-LV--KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp -----CC--EECTGGGTTCTTCCEEECCSSCCCEECT---TTGGGSTTCCEEECCSSC-CS--SCCTTTTTCSSCCEEEC
T ss_pred -----CC--ccCHHHhcCCCCCCEEECCCCcCceeCh---hhccCCCCCCEEECCCCc-Cc--cCChhhccCCCcCEEEC
Confidence 00 1123456788999999999865543221 12456788999999 432 22 34455778899999999
Q ss_pred eec
Q 044491 371 EKK 373 (460)
Q Consensus 371 ~~~ 373 (460)
.++
T Consensus 271 ~~N 273 (330)
T 1xku_A 271 HNN 273 (330)
T ss_dssp CSS
T ss_pred CCC
Confidence 886
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.61 E-value=3e-08 Score=106.39 Aligned_cols=100 Identities=12% Similarity=0.123 Sum_probs=50.2
Q ss_pred CceEEEEEeccCcceecCCccccCCcccEEEeceeeeecc-CCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 137 NVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKI-PPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
+++.|++..... ....|..+..+++|+.|+|++|..... +..+..+++|++|+| .+.+.. .-...+..+++|+.|
T Consensus 291 ~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L 367 (844)
T 3j0a_A 291 DLKVLNLAYNKI-NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI--IQDQTFKFLEKLQTL 367 (844)
T ss_dssp CCCEEEEESCCC-CEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC--CCSSCSCSCCCCCEE
T ss_pred CCCEEECCCCcC-CCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc--cChhhhcCCCCCCEE
Confidence 566666654432 122233444556666666666644333 223445666666666 443321 111234556666666
Q ss_pred EeeeccCCCceeEEEeccccceEEEEeec
Q 044491 215 SIGHLDDKSLINFNISSTTLKRLCLSFTN 243 (460)
Q Consensus 215 ~L~~c~~~~~~~~~i~~~~L~~L~l~~~~ 243 (460)
++.++...++.. .++|+.|.+.++.
T Consensus 368 ~Ls~N~l~~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 368 DLRDNALTTIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp EEETCCSCCCSS----CCSCSEEEEESCC
T ss_pred ECCCCCCCcccC----CCCcchhccCCCC
Confidence 666665443322 3455666555553
No 57
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.59 E-value=1.6e-10 Score=112.44 Aligned_cols=86 Identities=13% Similarity=0.021 Sum_probs=46.4
Q ss_pred cCceEEEEEeccCc--ceecCCc-------cccCCcccEEEeceeeeec-----cCCCcccCCCCcEEEE-EEEECCC--
Q 044491 136 RNVCEIELFLGSHK--LVRLPES-------ICTLKTLEVLKLYSDFVIK-----IPPSGLCFRSLKVLTV-VLEYPDN-- 198 (460)
Q Consensus 136 ~~l~~L~l~~~~~~--~~~lp~~-------l~~~~~L~~L~L~~~~~~~-----~~~~~~~l~~L~~L~L-~~~~~~~-- 198 (460)
+++++|++..+... ...+|.. +..+++|++|+|+++.... .+.....+++|++|+| ++.+.+.
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 139 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence 46777777443211 1122222 2466778888887775433 1123346777888887 6655321
Q ss_pred ccHHHHhccC---------CcccceEeeeccC
Q 044491 199 NLTERLFSIC---------PALEDLSIGHLDD 221 (460)
Q Consensus 199 ~~l~~l~~~c---------p~Le~L~L~~c~~ 221 (460)
..+...+..+ |.|+.|.+.+|..
T Consensus 140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred HHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 1223333334 7777777777754
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.59 E-value=4.9e-09 Score=104.27 Aligned_cols=118 Identities=16% Similarity=0.054 Sum_probs=87.1
Q ss_pred ccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEE-eccc
Q 044491 156 SICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNI-SSTT 233 (460)
Q Consensus 156 ~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~~ 233 (460)
.+..+++|++|+++++..... +....+++|++|+| ++.+.+- . +..+++|+.|++.+|...+.. + ..++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~---~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~~ 107 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNITTL---D--LSQNTNLTYLACDSNKLTNLD---VTPLTK 107 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-TTGGGCTTCSEEECCSSCCSCC---C--CTTCTTCSEEECCSSCCSCCC---CTTCTT
T ss_pred ChhHcCCCCEEEccCCCcccC-hhhcccCCCCEEEccCCcCCeE---c--cccCCCCCEEECcCCCCceee---cCCCCc
Confidence 445678999999999966665 57788999999999 8776542 2 778999999999999876542 2 2368
Q ss_pred cceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceEEeecCCCeeEEEEE
Q 044491 234 LKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYMFHELPPFTKVFID 288 (460)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~ 288 (460)
|+.|.+.++.- .+ .. ....++|++|.++++......++.+++|+.+++.
T Consensus 108 L~~L~L~~N~l---~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~ 156 (457)
T 3bz5_A 108 LTYLNCDTNKL---TK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCH 156 (457)
T ss_dssp CCEEECCSSCC---SC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECT
T ss_pred CCEEECCCCcC---Ce-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECC
Confidence 99999988852 11 11 2346889999988876545556777788877763
No 59
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.59 E-value=2e-09 Score=102.52 Aligned_cols=216 Identities=11% Similarity=0.068 Sum_probs=118.6
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
.++++|++..... ....|..+..+++|++|+|+++.....+... +++|++|+| .+.+.. .-...+..+++|+.|
T Consensus 78 ~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~--~~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 78 QHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRK--VPKGVFSGLRNMNCI 152 (332)
T ss_dssp TTCCEEECCSSCC-CEECGGGSTTCTTCCEEECCSSCCCSCCSSC--CTTCCEEECCSSCCCC--CCSGGGSSCSSCCEE
T ss_pred CCCcEEECCCCcc-CccCHhHhhCcCCCCEEECCCCcCCccCccc--cccCCEEECCCCccCc--cCHhHhCCCccCCEE
Confidence 4688888755432 2223455667788888888888655543332 278888888 655442 122446778888888
Q ss_pred EeeeccCCC--ceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceE---EeecCCCeeEEEEEE
Q 044491 215 SIGHLDDKS--LINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSY---MFHELPPFTKVFIDI 289 (460)
Q Consensus 215 ~L~~c~~~~--~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~ 289 (460)
.+.++.... .....+...+|+.|.+.++........ ..++|+.|+++++..... .+..+++|+.+++..
T Consensus 153 ~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~------~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD------LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226 (332)
T ss_dssp ECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSS------SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS
T ss_pred ECCCCccccCCCCcccccCCccCEEECcCCCCCccCcc------ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 888876421 111111122677777777642211111 126788888777654322 345667777766632
Q ss_pred EecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEec--cCcccHHH--HHhcCCC
Q 044491 290 FYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVEL--FGWRLLPI--ILSSLPN 364 (460)
Q Consensus 290 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~--~~~~~l~~--~l~~~p~ 364 (460)
... . ......+..+++|+.|.++.+.+..++.. +..+++|+.|++ .+.- .....+.. +....++
T Consensus 227 N~l--~-----~~~~~~~~~l~~L~~L~L~~N~l~~lp~~----l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 227 NQI--R-----MIENGSLSFLPTLRELHLDNNKLSRVPAG----LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp SCC--C-----CCCTTGGGGCTTCCEEECCSSCCCBCCTT----GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred CcC--C-----cCChhHhhCCCCCCEEECCCCcCeecChh----hhcCccCCEEECCCCCCCccChhHcccccccccccc
Confidence 210 0 11112356777888888887655433221 445677888888 3211 11111111 0112467
Q ss_pred CCeEEEeec
Q 044491 365 LEEFVFEKK 373 (460)
Q Consensus 365 L~~L~I~~~ 373 (460)
|+.|++.+.
T Consensus 296 l~~L~l~~N 304 (332)
T 2ft3_A 296 YNGISLFNN 304 (332)
T ss_dssp BSEEECCSS
T ss_pred ccceEeecC
Confidence 788888775
No 60
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=7.8e-09 Score=110.07 Aligned_cols=223 Identities=11% Similarity=0.020 Sum_probs=129.7
Q ss_pred cCceEEEEEeccCcce----------------ecCCccc--cCCcccEEEeceeee-eccCCCcccCCCCcEEEE-EEE-
Q 044491 136 RNVCEIELFLGSHKLV----------------RLPESIC--TLKTLEVLKLYSDFV-IKIPPSGLCFRSLKVLTV-VLE- 194 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~----------------~lp~~l~--~~~~L~~L~L~~~~~-~~~~~~~~~l~~L~~L~L-~~~- 194 (460)
.+++.|++........ .+|..+. .+++|+.|+|++|.. ...|..+..+++|+.|+| ++.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 4799999976653221 2888877 899999999999853 344455678999999999 775
Q ss_pred ECC---CccHHHH---hccCCcccceEeeeccCCCcee--EEEeccccceEEEEeecCccccCCceeEEEecCCceeEEE
Q 044491 195 YPD---NNLTERL---FSICPALEDLSIGHLDDKSLIN--FNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNI 266 (460)
Q Consensus 195 ~~~---~~~l~~l---~~~cp~Le~L~L~~c~~~~~~~--~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l 266 (460)
+.+ +..+..+ +..+|+|+.|.|.+|....+.. .--..++|+.|.+.++... .++ .....++|+.|++
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~----~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR----HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC----BCC-CCCTTSEESEEEC
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc----cch-hhcCCCcceEEEC
Confidence 331 1223332 3466799999999987553221 1112367888888777521 112 2234678888888
Q ss_pred eeeeeceE--EeecCCC-eeEEEEEEEecCCccccccccHHHHhhcC--cceeEEEEeccchhhhhhhccccCC--CCCc
Q 044491 267 HDFCMVSY--MFHELPP-FTKVFIDIFYDDGWSWVQSGRAQRLLNSL--TKAKFLALSADTVYALDKIYKDVFP--KFPN 339 (460)
Q Consensus 267 ~~~~~~~~--~~~~~p~-L~~l~l~~~~~~~~~~~~~~~~~~~l~~l--~~l~~L~l~~~~~~~~~~~~~~~~~--~~~~ 339 (460)
+++..... .+..+++ |+.+++..... ..+...+... ++|+.|.++.+.+............ ..++
T Consensus 603 s~N~l~~lp~~l~~l~~~L~~L~Ls~N~L--------~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 603 DYNQIEEIPEDFCAFTDQVEGLGFSHNKL--------KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp CSSCCSCCCTTSCEECTTCCEEECCSSCC--------CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred cCCccccchHHHhhccccCCEEECcCCCC--------CcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 88754322 2455666 88777743221 0111222223 3488888877654322110000011 2347
Q ss_pred eeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 340 VTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 340 L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
|+.|++ .+. .. .....++..+++|+.|+++++
T Consensus 675 L~~L~Ls~N~-L~-~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 675 ASTVTLSYNE-IQ-KFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp EEEEECCSSC-CC-SCCHHHHHTTCCCSEEECCSC
T ss_pred cCEEEccCCc-CC-ccCHHHHccCCCCCEEECCCC
Confidence 777777 332 22 112344557778888877765
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.58 E-value=4.1e-09 Score=100.28 Aligned_cols=270 Identities=11% Similarity=0.004 Sum_probs=147.3
Q ss_pred cCceEEEEEeccCcceec-CCccccCCcccEEEeceeeeeccC-CCcccCCCCcEEEE-EEEECCCccHHHHhccCCccc
Q 044491 136 RNVCEIELFLGSHKLVRL-PESICTLKTLEVLKLYSDFVIKIP-PSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALE 212 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 212 (460)
.+++.|++.... ...+ |..+..+++|++|+|+++...... ..+..+++|++|+| ++.+.. +.. ...++|+
T Consensus 54 ~~l~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---l~~--~~~~~L~ 126 (332)
T 2ft3_A 54 PDTTLLDLQNND--ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE---IPP--NLPSSLV 126 (332)
T ss_dssp TTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS---CCS--SCCTTCC
T ss_pred CCCeEEECCCCc--CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc---cCc--cccccCC
Confidence 478888886554 2334 345667889999999988655542 34567899999999 665432 111 1127899
Q ss_pred ceEeeeccCCCceeEEE-eccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceEEeecCCCeeEEEEEEEe
Q 044491 213 DLSIGHLDDKSLINFNI-SSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYMFHELPPFTKVFIDIFY 291 (460)
Q Consensus 213 ~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~ 291 (460)
+|.+.++.......-.+ ..++|+.|.+.++....... ........+|+.|+++++........-.++|+.+++....
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF--EPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK 204 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS--CTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC
T ss_pred EEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC--CcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCc
Confidence 99999887643322111 24688888888775211000 0001112278888888775433222223567766653221
Q ss_pred cCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEE
Q 044491 292 DDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVF 370 (460)
Q Consensus 292 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I 370 (460)
. . ......+..+++|+.|.++.+.+.... ...+..+++|+.|++ .+. .. .++..+..+++|+.|++
T Consensus 205 i--~-----~~~~~~l~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 205 I--Q-----AIELEDLLRYSKLYRLGLGHNQIRMIE---NGSLSFLPTLRELHLDNNK-LS--RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp C--C-----CCCTTSSTTCTTCSCCBCCSSCCCCCC---TTGGGGCTTCCEEECCSSC-CC--BCCTTGGGCTTCCEEEC
T ss_pred C--C-----ccCHHHhcCCCCCCEEECCCCcCCcCC---hhHhhCCCCCCEEECCCCc-Ce--ecChhhhcCccCCEEEC
Confidence 0 0 111234567788999998886543322 112456778899988 332 22 34445778899999999
Q ss_pred eecccccccCcccccCCCCCcccccceeEEEEEeecCchhHHHHHHHHHhcCcccceEEEE
Q 044491 371 EKKLSCHFEEFGWIEQPNIPLCLLLHVKKIEIKKFEGQKDELGLVKYLLKNCKVLNKVIIR 431 (460)
Q Consensus 371 ~~~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~Le~l~i~ 431 (460)
.++.-.......+ ... .+......|+.+.+.+-.....+ .....+.+.+.|+.+.+.
T Consensus 272 ~~N~l~~~~~~~~-~~~-~~~~~~~~l~~L~l~~N~~~~~~--~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 272 HTNNITKVGVNDF-CPV-GFGVKRAYYNGISLFNNPVPYWE--VQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp CSSCCCBCCTTSS-SCS-SCCSSSCCBSEEECCSSSSCGGG--SCGGGGTTBCCSTTEEC-
T ss_pred CCCCCCccChhHc-ccc-ccccccccccceEeecCcccccc--cCcccccccchhhhhhcc
Confidence 8762211110000 000 01112356777777653221111 111234566677776554
No 62
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.58 E-value=2.5e-09 Score=106.31 Aligned_cols=144 Identities=15% Similarity=0.171 Sum_probs=85.6
Q ss_pred CCceeEEEeeeeeceE---EeecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCC
Q 044491 259 PNLELLNIHDFCMVSY---MFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFP 335 (460)
Q Consensus 259 p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~ 335 (460)
++|+.|+++++..... .+..+++|+.+++..... . ......+..+++|+.|.++.+.+... .+..+.
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-----~--~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~ 344 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-----N--KIDDNAFWGLTHLLKLNLSQNFLGSI---DSRMFE 344 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-----C--EECTTTTTTCTTCCEEECCSSCCCEE---CGGGGT
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcc-----c--ccChhHhcCcccCCEEECCCCccCCc---ChhHhc
Confidence 6788888888755332 346778898888732210 0 11223466789999999998655322 222356
Q ss_pred CCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeecccccccCcccccCCCCCcccccceeEEEEEe--ecCchhHH
Q 044491 336 KFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKKLSCHFEEFGWIEQPNIPLCLLLHVKKIEIKK--FEGQKDEL 412 (460)
Q Consensus 336 ~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i~~--~~~~~~~~ 412 (460)
.+++|+.|+| .+. ... ..+..+..+++|++|++.++.-. ..+...-...++|+.+.+.+ +.+.....
T Consensus 345 ~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 345 NLDKLEVLDLSYNH-IRA-LGDQSFLGLPNLKELALDTNQLK--------SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TCTTCCEEECCSSC-CCE-ECTTTTTTCTTCCEEECCSSCCS--------CCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CcccCCEEECCCCc-ccc-cChhhccccccccEEECCCCccc--------cCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 7889999999 432 211 12445677899999999885211 00000001236899998875 55665545
Q ss_pred HHH-HHHHhcC
Q 044491 413 GLV-KYLLKNC 422 (460)
Q Consensus 413 ~~~-~~ll~~a 422 (460)
... .++-++.
T Consensus 415 ~~l~~~l~~~~ 425 (455)
T 3v47_A 415 DYLSRWLNKNS 425 (455)
T ss_dssp HHHHHHHHHTT
T ss_pred hHHHHHHHhCc
Confidence 544 4444443
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.58 E-value=1.1e-07 Score=96.22 Aligned_cols=122 Identities=14% Similarity=0.001 Sum_probs=62.6
Q ss_pred cCceEEEEEeccCcceecC-CccccCCcccEEEeceeeeecc-CCCcccCCCCcEEEE-EEEECCCccHHHHhccCCccc
Q 044491 136 RNVCEIELFLGSHKLVRLP-ESICTLKTLEVLKLYSDFVIKI-PPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALE 212 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 212 (460)
.++++|++.... ...++ ..+..+++|++|+|+++..... +..+..+++|++|+| ++.+.+ +... .+++|+
T Consensus 21 ~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---lp~~--~l~~L~ 93 (520)
T 2z7x_B 21 QKTTILNISQNY--ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK---ISCH--PTVNLK 93 (520)
T ss_dssp TTCSEEECCSSC--CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE---EECC--CCCCCS
T ss_pred ccccEEECCCCc--ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee---cCcc--ccCCcc
Confidence 466777765443 22232 3445567777777777754443 224456777777777 544331 1111 567777
Q ss_pred ceEeeeccCCCcee--EEEeccccceEEEEeecCccccCCceeEEEecCCc--eeEEEeeee
Q 044491 213 DLSIGHLDDKSLIN--FNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNL--ELLNIHDFC 270 (460)
Q Consensus 213 ~L~L~~c~~~~~~~--~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L--~~L~l~~~~ 270 (460)
+|++.+|...+... .--..++|+.|.+.++.-.. ......++| +.|.++++.
T Consensus 94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~------~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK------SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp EEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG------GGGGGGTTSCEEEEEEEECT
T ss_pred EEeccCCccccccchhhhccCCcceEEEecCcccch------hhccccccceeeEEEeeccc
Confidence 77777765433211 00123567777776664110 001123455 777776653
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.57 E-value=6.3e-08 Score=99.54 Aligned_cols=254 Identities=15% Similarity=0.113 Sum_probs=143.3
Q ss_pred hcCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccc
Q 044491 135 MRNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALED 213 (460)
Q Consensus 135 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 213 (460)
..+++.|++.... ...+|..+. ++|+.|+|++|....++. .+++|++|+| ++.+.+ +-..+++|+.
T Consensus 39 ~~~l~~L~ls~n~--L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~------lp~~l~~L~~ 105 (622)
T 3g06_A 39 NNGNAVLNVGESG--LTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS------LPVLPPGLLE 105 (622)
T ss_dssp HHCCCEEECCSSC--CSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC------CCCCCTTCCE
T ss_pred CCCCcEEEecCCC--cCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc------CCCCCCCCCE
Confidence 3478888886654 347777665 799999999997655533 6899999999 776542 2226799999
Q ss_pred eEeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceEEeecCCCeeEEEEEEEecC
Q 044491 214 LSIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYMFHELPPFTKVFIDIFYDD 293 (460)
Q Consensus 214 L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~~~ 293 (460)
|++.+|...++.. ..++|+.|.+.++.-.. +....++|++|+++++..... -...++|+.+.+....
T Consensus 106 L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~-------lp~~l~~L~~L~Ls~N~l~~l-~~~~~~L~~L~L~~N~-- 172 (622)
T 3g06_A 106 LSIFSNPLTHLPA---LPSGLCKLWIFGNQLTS-------LPVLPPGLQELSVSDNQLASL-PALPSELCKLWAYNNQ-- 172 (622)
T ss_dssp EEECSCCCCCCCC---CCTTCCEEECCSSCCSC-------CCCCCTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSC--
T ss_pred EECcCCcCCCCCC---CCCCcCEEECCCCCCCc-------CCCCCCCCCEEECcCCcCCCc-CCccCCCCEEECCCCC--
Confidence 9999997665443 45688999888875211 112348888888887754221 1234556665542211
Q ss_pred CccccccccHHHHhhcCcceeEEEEeccchhhhhhhc-------------cccCCCCCceeEEEE-EEeccCcccHHHHH
Q 044491 294 GWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIY-------------KDVFPKFPNVTCLAV-KVELFGWRLLPIIL 359 (460)
Q Consensus 294 ~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~-------------~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l 359 (460)
+..+...+++|+.|.++.+.+..++... ......+++|+.|++ .+. .. .++
T Consensus 173 ---------l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-L~--~lp--- 237 (622)
T 3g06_A 173 ---------LTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR-LT--SLP--- 237 (622)
T ss_dssp ---------CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC-CS--CCC---
T ss_pred ---------CCCCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCc-cC--cCC---
Confidence 0011133455555555554332211100 000112355666666 221 11 121
Q ss_pred hcCCCCCeEEEeecccccccCcccccCCC-CCcccccceeEEEEEeecCchhHHHHHHHHHhcCcccceEEEEeccCCc-
Q 044491 360 SSLPNLEEFVFEKKLSCHFEEFGWIEQPN-IPLCLLLHVKKIEIKKFEGQKDELGLVKYLLKNCKVLNKVIIRCKETAS- 437 (460)
Q Consensus 360 ~~~p~L~~L~I~~~~~~~~~~~~w~~~~~-~~~~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~Le~l~i~~~~~~~- 437 (460)
..+++|++|+++++ ... .+. ..++|+.+.+.+-.-. .+ ..-+.+.+.|+.+.+....-..
T Consensus 238 ~~l~~L~~L~Ls~N------------~L~~lp~-~~~~L~~L~Ls~N~L~--~l---p~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 238 VLPSELKELMVSGN------------RLTSLPM-LPSGLLSLSVYRNQLT--RL---PESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CCCTTCCEEECCSS------------CCSCCCC-CCTTCCEEECCSSCCC--SC---CGGGGGSCTTCEEECCSCCCCHH
T ss_pred CCCCcCcEEECCCC------------CCCcCCc-ccccCcEEeCCCCCCC--cC---CHHHhhccccCEEEecCCCCCCc
Confidence 34567777777664 222 222 4467888888653211 00 1125678889988887644332
Q ss_pred HHHHHHHHhh
Q 044491 438 KENLCQKLDK 447 (460)
Q Consensus 438 ~~~~~~~l~~ 447 (460)
..+.+..+.+
T Consensus 300 ~~~~l~~L~~ 309 (622)
T 3g06_A 300 TLQALREITS 309 (622)
T ss_dssp HHHHHHHHHH
T ss_pred CHHHHHhccc
Confidence 3344444443
No 65
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.55 E-value=7.9e-09 Score=97.44 Aligned_cols=243 Identities=14% Similarity=0.090 Sum_probs=148.2
Q ss_pred cccEEEEEecCCCCcchhhHHHHHHHhcCceEEEEEeccCcceecCCccccCCcccEEEeceeeee-ccCCCcccCCCCc
Q 044491 109 AIGKFSLDRWALSDLTRFRSWVDSIIMRNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVI-KIPPSGLCFRSLK 187 (460)
Q Consensus 109 ~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~~~l~~L~ 187 (460)
.|+.+.+..........+...+.. -..+++|++.........+|..+..+++|++|+|+++... ..+..+..+++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~--l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLAN--LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGG--CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCCcccChhHhC--CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 377777775432211012222221 3589999997422224467888888999999999999665 3444567899999
Q ss_pred EEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEE-ecc-ccceEEEEeecCccccCCceeEEEecCCceeE
Q 044491 188 VLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNI-SST-TLKRLCLSFTNGVAYSNNWHKVMIATPNLELL 264 (460)
Q Consensus 188 ~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L 264 (460)
+|+| .+.+.+ .+...+..+++|+.|.+.++...+.....+ ..+ +|+.|.+.++.-.... .. .+...+|+.|
T Consensus 129 ~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~---~~-~~~~l~L~~L 202 (313)
T 1ogq_A 129 TLDFSYNALSG--TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI---PP-TFANLNLAFV 202 (313)
T ss_dssp EEECCSSEEES--CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC---CG-GGGGCCCSEE
T ss_pred EEeCCCCccCC--cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC---Ch-HHhCCcccEE
Confidence 9999 766652 233456779999999999986431110011 123 7899988877411000 00 0112249999
Q ss_pred EEeeeeec---eEEeecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCcee
Q 044491 265 NIHDFCMV---SYMFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVT 341 (460)
Q Consensus 265 ~l~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 341 (460)
+++++... ...+..+++|+.+++..... ......+..+++|+.|.++.+.+... .+..+..+++|+
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l--------~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~ 271 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSL--------AFDLGKVGLSKNLNGLDLRNNRIYGT---LPQGLTQLKFLH 271 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEE--------CCBGGGCCCCTTCCEEECCSSCCEEC---CCGGGGGCTTCC
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCce--------eeecCcccccCCCCEEECcCCcccCc---CChHHhcCcCCC
Confidence 99887542 22356788999988843321 01112256789999999998655311 122255678999
Q ss_pred EEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 342 CLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 342 ~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
.|++ .+.-.+ .++.. ..+++|+.|++.+.
T Consensus 272 ~L~Ls~N~l~~--~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 272 SLNVSFNNLCG--EIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp EEECCSSEEEE--ECCCS-TTGGGSCGGGTCSS
T ss_pred EEECcCCcccc--cCCCC-ccccccChHHhcCC
Confidence 9999 332110 12222 56788888888775
No 66
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.54 E-value=3.4e-07 Score=93.58 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=36.8
Q ss_pred hcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 308 NSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 308 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
..+++++.|.++.+.+.. ..+..+..+++|+.|++ .+.-.+...++..+..+++|++|++.++
T Consensus 350 ~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTD---SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp SSCCCCCEEECCSSCCCT---TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred cCCCCceEEECCCCcccc---chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 456677777777654432 11122456677777777 4322223345555677777777777765
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.52 E-value=9.3e-08 Score=96.72 Aligned_cols=77 Identities=13% Similarity=0.011 Sum_probs=46.8
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeec--cCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcc-
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIK--IPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPAL- 211 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~--~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~L- 211 (460)
.++++|++..... ..+|.. .+++|++|+|++|.... .|..+..+++|++|+| ...+.+ ..+..++.|
T Consensus 69 ~~L~~L~Ls~N~l--~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~ 139 (520)
T 2z7x_B 69 QELEYLDLSHNKL--VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVLPIAHLN 139 (520)
T ss_dssp TTCCEEECCSSCC--CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-----GGGGGGTTSC
T ss_pred cCCCEEecCCCce--eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-----hhccccccce
Confidence 4677777755432 245554 56777777777775433 2334557777777777 655432 224455666
Q ss_pred -cceEeeeccC
Q 044491 212 -EDLSIGHLDD 221 (460)
Q Consensus 212 -e~L~L~~c~~ 221 (460)
+.|.+.+|..
T Consensus 140 L~~L~l~~n~l 150 (520)
T 2z7x_B 140 ISKVLLVLGET 150 (520)
T ss_dssp EEEEEEEECTT
T ss_pred eeEEEeecccc
Confidence 7777777654
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.52 E-value=1.2e-07 Score=96.42 Aligned_cols=115 Identities=18% Similarity=0.147 Sum_probs=71.5
Q ss_pred ceecCCccccCCcccEEEeceeeeeccC-CCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeE
Q 044491 150 LVRLPESICTLKTLEVLKLYSDFVIKIP-PSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINF 227 (460)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~ 227 (460)
...+|..+. ++|++|+|+++.....+ ..+..+++|++|+| ++.+. +.....+..+++|++|++.+|...+...-
T Consensus 17 l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 17 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN--TIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC--ccChhhccccccCCEEECCCCccCccCHH
Confidence 445666554 78999999999765553 35678999999999 76554 22234567899999999999976543221
Q ss_pred EE-eccccceEEEEeecCccccCCceeEEEecCCceeEEEeeee
Q 044491 228 NI-SSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFC 270 (460)
Q Consensus 228 ~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 270 (460)
.+ ..++|+.|.+.++...... ........++|+.|+++++.
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLG--VTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSC--SSCSCTTCTTCCEEEEEESS
T ss_pred HhccCCCCcEEECCCCcccccc--hhhhhhccCCccEEECCCCc
Confidence 11 2356777777666411100 01112235566666666553
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.51 E-value=8.5e-10 Score=103.73 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=31.5
Q ss_pred hhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCC-CCCeEEEeec
Q 044491 307 LNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLP-NLEEFVFEKK 373 (460)
Q Consensus 307 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p-~L~~L~I~~~ 373 (460)
+..+++|+.|.++.+.+..... ..+..+++|+.|++ .+.- ... .+..+..+| +|+.|++.++
T Consensus 195 ~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l-~~~-~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 195 FNSLSSLQVLNMSHNNFFSLDT---FPYKCLNSLQVLDYSLNHI-MTS-KKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp TTTCTTCCEEECTTSCCSBCCS---GGGTTCTTCCEEECTTSCC-CBC-SSSSCCCCCTTCCEEECTTC
T ss_pred hcCCCCCCEEECCCCccCccCh---hhccCcccCCEeECCCCCC-ccc-CHHHHHhhhccCCEEEccCC
Confidence 4556677777776654432211 11345667777777 3321 111 122234443 7777777665
No 70
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.50 E-value=2.7e-08 Score=92.68 Aligned_cols=80 Identities=18% Similarity=0.124 Sum_probs=52.0
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
.++++|++..+. ...++ .+..+++|+.|+|+++.....++ ...+++|++|+| ++.+.+ +.. +..+++|+.|
T Consensus 46 ~~L~~L~l~~~~--i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~---~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 46 NSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD---LSS-LKDLKKLKSL 117 (291)
T ss_dssp HTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC---GGG-GTTCTTCCEE
T ss_pred CcccEEEccCCC--cccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC---Chh-hccCCCCCEE
Confidence 367777775443 22333 35567888888888886555433 667888888888 665543 222 6677888888
Q ss_pred EeeeccCCC
Q 044491 215 SIGHLDDKS 223 (460)
Q Consensus 215 ~L~~c~~~~ 223 (460)
++.+|...+
T Consensus 118 ~L~~n~i~~ 126 (291)
T 1h6t_A 118 SLEHNGISD 126 (291)
T ss_dssp ECTTSCCCC
T ss_pred ECCCCcCCC
Confidence 888776543
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.47 E-value=1.3e-08 Score=94.58 Aligned_cols=193 Identities=17% Similarity=0.122 Sum_probs=105.9
Q ss_pred cCceEEEEEeccCcceecC-CccccCCcccEEEeceeeeecc-CCCcccCCCCcEEEE-EEE-ECCCccHHHHhccCCcc
Q 044491 136 RNVCEIELFLGSHKLVRLP-ESICTLKTLEVLKLYSDFVIKI-PPSGLCFRSLKVLTV-VLE-YPDNNLTERLFSICPAL 211 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~L-~~~-~~~~~~l~~l~~~cp~L 211 (460)
.++++|++.... ...++ ..+..+++|++|+|+++..... +..+..+++|++|+| ++. ... .....+..+++|
T Consensus 32 ~~l~~L~l~~n~--i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~--~~~~~~~~l~~L 107 (285)
T 1ozn_A 32 AASQRIFLHGNR--ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS--VDPATFHGLGRL 107 (285)
T ss_dssp TTCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC--CCTTTTTTCTTC
T ss_pred CCceEEEeeCCc--CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc--cCHHHhcCCcCC
Confidence 356666664433 22233 3345567777777777654444 234456777777777 553 221 112345567777
Q ss_pred cceEeeeccCCCceeEEE-eccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceEE---eecCCCeeEEEE
Q 044491 212 EDLSIGHLDDKSLINFNI-SSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYM---FHELPPFTKVFI 287 (460)
Q Consensus 212 e~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~p~L~~l~l 287 (460)
++|++.++...+...-.+ ..++|+.|.+.++.-.... .......++|+.|+++++...... +..+++|+.+++
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP---DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC---HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 777777765433211111 1356777777666411111 001123577888888776543322 456778887776
Q ss_pred EEEecCCccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE
Q 044491 288 DIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV 345 (460)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 345 (460)
..... . ......+..+++|+.|+++.+.+..... ..+..+++|+.|++
T Consensus 185 ~~n~l--~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 185 HQNRV--A-----HVHPHAFRDLGRLMTLYLFANNLSALPT---EALAPLRALQYLRL 232 (285)
T ss_dssp CSSCC--C-----EECTTTTTTCTTCCEEECCSSCCSCCCH---HHHTTCTTCCEEEC
T ss_pred CCCcc--c-----ccCHhHccCcccccEeeCCCCcCCcCCH---HHcccCcccCEEec
Confidence 32210 0 1113345678899999999865543221 22456788999999
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.44 E-value=2.3e-08 Score=92.41 Aligned_cols=82 Identities=20% Similarity=0.152 Sum_probs=41.3
Q ss_pred CceEEEEEeccCcceecCC-ccccCCcccEEEeceeeeeccCC-CcccCCCCcEEEE-EEEECCCccHHHHhccCCcccc
Q 044491 137 NVCEIELFLGSHKLVRLPE-SICTLKTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALED 213 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 213 (460)
++++|++.... ...++. .+..+++|++|+|+++.....++ .+..+++|++|+| ++.+.+ .....+..+++|+.
T Consensus 29 ~l~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 29 STKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQK 104 (276)
T ss_dssp TCCEEECTTCC--CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCE
T ss_pred CccEEECCCCc--ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc--cChhhhcCCccccE
Confidence 45666553332 222322 34455666666666664444332 3445666666666 443321 11133455666666
Q ss_pred eEeeeccCC
Q 044491 214 LSIGHLDDK 222 (460)
Q Consensus 214 L~L~~c~~~ 222 (460)
|.+.++...
T Consensus 105 L~l~~n~l~ 113 (276)
T 2z62_A 105 LVAVETNLA 113 (276)
T ss_dssp EECTTSCCC
T ss_pred EECCCCCcc
Confidence 666666543
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.41 E-value=3.6e-08 Score=90.77 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=30.9
Q ss_pred CcccEEEeceeeeeccCC-CcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccC
Q 044491 161 KTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDD 221 (460)
Q Consensus 161 ~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 221 (460)
++|+.|+|+++.....++ .+..+++|++|+| +..+.. .-..++..+++|++|.+.++..
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC--CCTTTTSSCTTCCEEECCSSCC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe--eChhhhcCCCCCCEEECCCCcC
Confidence 456666666664444332 3445666666666 443321 1123345566666666666543
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.38 E-value=8.6e-09 Score=97.15 Aligned_cols=62 Identities=15% Similarity=0.061 Sum_probs=33.1
Q ss_pred HHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 305 RLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 305 ~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
.++..+++|+.|+++.+.+..... ......+++|+.|++ .+.-. .++.-+. ++|++|+++++
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~~l~~L~~L~Ls~N~l~---~ip~~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAG--APSCDWPSQLNSLNLSFTGLK---QVPKGLP--AKLSVLDLSYN 284 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCC--CSCCCCCTTCCEEECTTSCCS---SCCSSCC--SEEEEEECCSS
T ss_pred HHHhcCCCCCEEECCCCcCCcccc--hhhhhhcCCCCEEECCCCccC---hhhhhcc--CCceEEECCCC
Confidence 345567888888887765433221 011334567777777 33211 1221111 67777777764
No 75
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.38 E-value=9.7e-08 Score=91.42 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=39.6
Q ss_pred cCCCCcEEEE-EEEEC-------CCccHHHHhccCCcccceEeeeccCCCceeEEEeccccceEEEEeec
Q 044491 182 CFRSLKVLTV-VLEYP-------DNNLTERLFSICPALEDLSIGHLDDKSLINFNISSTTLKRLCLSFTN 243 (460)
Q Consensus 182 ~l~~L~~L~L-~~~~~-------~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~ 243 (460)
.|++|+.|.+ ..... +...+..++..+|+|++|.|.++....+.. +..++|++|.+..|.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGG 204 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSB
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCC
Confidence 4667777766 54221 123577889999999999999874222222 346788888887764
No 76
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.37 E-value=4e-07 Score=93.03 Aligned_cols=76 Identities=11% Similarity=0.061 Sum_probs=38.2
Q ss_pred CceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccC--CCcccCCCCcEEEE-EEEECCCccHHHHhccCCcc--
Q 044491 137 NVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIP--PSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPAL-- 211 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~--~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~L-- 211 (460)
++++|++.... ...+|.. .+++|++|+|+++.....+ ..+..+++|++|+| ...+.. .. +..++.|
T Consensus 101 ~L~~L~Ls~N~--l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~----~~~l~~L~L 171 (562)
T 3a79_B 101 DLEYLDVSHNR--LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD----LLPVAHLHL 171 (562)
T ss_dssp TCCEEECTTSC--CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT----TGGGTTSCE
T ss_pred CCCEEECCCCc--CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc----hhhhhhcee
Confidence 56666664333 2245544 5566666666666443322 23446666666666 544432 22 2223333
Q ss_pred cceEeeeccC
Q 044491 212 EDLSIGHLDD 221 (460)
Q Consensus 212 e~L~L~~c~~ 221 (460)
+.|.+.++..
T Consensus 172 ~~L~L~~n~l 181 (562)
T 3a79_B 172 SCILLDLVSY 181 (562)
T ss_dssp EEEEEEESSC
T ss_pred eEEEeecccc
Confidence 6666665543
No 77
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.35 E-value=3.3e-07 Score=79.95 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=28.1
Q ss_pred hhcCcceeEEEEeccc-hhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 307 LNSLTKAKFLALSADT-VYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 307 l~~l~~l~~L~l~~~~-~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
+..+++|+.|.++.+. +.... .+..+++|+.|++ .+.-.+ +. .+..+|+|+.|++.+.
T Consensus 132 l~~l~~L~~L~L~~n~~i~~~~-----~l~~l~~L~~L~l~~n~i~~---~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 132 INTLPKVNSIDLSYNGAITDIM-----PLKTLPELKSLNIQFDGVHD---YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp HTTCSSCCEEECCSCTBCCCCG-----GGGGCSSCCEEECTTBCCCC---CT-TGGGCSSCCEEEECBC
T ss_pred HhhCCCCCEEEccCCCCccccH-----hhcCCCCCCEEECCCCCCcC---hH-HhccCCCCCEEEeeCc
Confidence 3445555555555543 22221 1334455555555 332111 11 4566777777777663
No 78
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.35 E-value=1.3e-07 Score=88.15 Aligned_cols=79 Identities=14% Similarity=0.076 Sum_probs=42.4
Q ss_pred cCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEEeccccceE
Q 044491 159 TLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNISSTTLKRL 237 (460)
Q Consensus 159 ~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L 237 (460)
.+++|+.|+++++..... +....+++|++|+| ++.+.+- .. +..+++|+.|.+.++...++.. --..++|+.|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~---~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI---KP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCC---cc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 345666666666644333 44556666666666 5544321 12 5566666666666665443322 0112456666
Q ss_pred EEEeec
Q 044491 238 CLSFTN 243 (460)
Q Consensus 238 ~l~~~~ 243 (460)
.+.++.
T Consensus 118 ~L~~n~ 123 (291)
T 1h6t_A 118 SLEHNG 123 (291)
T ss_dssp ECTTSC
T ss_pred ECCCCc
Confidence 665553
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.35 E-value=1.1e-08 Score=96.43 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=35.7
Q ss_pred hcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 308 NSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 308 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
..+++|+.|.++.+.+...+.. .+ ++|+.|++ .+. .. +++. +..+|+|++|++.+.
T Consensus 250 ~~l~~L~~L~Ls~N~l~~ip~~----~~--~~L~~L~Ls~N~-l~--~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLKQVPKG----LP--AKLSVLDLSYNR-LD--RNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCCTTCCEEECTTSCCSSCCSS----CC--SEEEEEECCSSC-CC--SCCC-TTTSCEEEEEECTTC
T ss_pred hhcCCCCEEECCCCccChhhhh----cc--CCceEEECCCCC-CC--CChh-HhhCCCCCEEeccCC
Confidence 3467889999888665432211 22 68888888 332 22 2233 677889999988774
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.34 E-value=7.4e-08 Score=88.90 Aligned_cols=131 Identities=18% Similarity=0.167 Sum_probs=81.0
Q ss_pred ceecCCccccCCcccEEEeceeeeeccCC-CcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeE
Q 044491 150 LVRLPESICTLKTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINF 227 (460)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~ 227 (460)
...+|..+. ++|++|+|+++.....++ .+..+++|++|+| ++.+. ......+..+++|+.|++.++...+...-
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC--ccCHHHccCCcCCCEEECCCCccCccChh
Confidence 445665442 579999999997666644 5678999999999 76543 22234567899999999999865322110
Q ss_pred EE-eccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeece----EEeecCCCeeEEEE
Q 044491 228 NI-SSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVS----YMFHELPPFTKVFI 287 (460)
Q Consensus 228 ~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~----~~~~~~p~L~~l~l 287 (460)
.+ ..++|+.|.+.++...... .......++|+.|+++++.... ..+.++++|+.+++
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLE---NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCST---TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred hhcCCccccEEECCCCCccccC---chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 01 2357888887776421111 1112245778888877765422 23445666666665
No 81
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.34 E-value=4.9e-08 Score=100.15 Aligned_cols=160 Identities=18% Similarity=0.168 Sum_probs=89.0
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
.+++.|++..+. ...++ .+..+++|+.|+|++|.....++ ...+++|+.|+| .+.+.+.. -+..+++|+.|
T Consensus 43 ~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L 114 (605)
T 1m9s_A 43 NSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS----SLKDLKKLKSL 114 (605)
T ss_dssp TTCCCCBCTTCC--CCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT----TSTTCTTCCEE
T ss_pred CCCCEEECcCCC--CCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh----hhccCCCCCEE
Confidence 367777664433 22233 45667888888888886555433 667888888888 66554322 35667888888
Q ss_pred EeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeece-EEeecCCCeeEEEEEEEecC
Q 044491 215 SIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVS-YMFHELPPFTKVFIDIFYDD 293 (460)
Q Consensus 215 ~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~-~~~~~~p~L~~l~l~~~~~~ 293 (460)
.|.+|...++..+ ...++|+.|.+.+|. ... ..+..+++|+.+++.....
T Consensus 115 ~Ls~N~l~~l~~l-~~l~~L~~L~Ls~N~---------------------------l~~l~~l~~l~~L~~L~Ls~N~l- 165 (605)
T 1m9s_A 115 SLEHNGISDINGL-VHLPQLESLYLGNNK---------------------------ITDITVLSRLTKLDTLSLEDNQI- 165 (605)
T ss_dssp ECTTSCCCCCGGG-GGCTTCSEEECCSSC---------------------------CCCCGGGGSCTTCSEEECCSSCC-
T ss_pred EecCCCCCCCccc-cCCCccCEEECCCCc---------------------------cCCchhhcccCCCCEEECcCCcC-
Confidence 8888765432110 012344555444442 211 1123344444444421110
Q ss_pred CccccccccHHHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE
Q 044491 294 GWSWVQSGRAQRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV 345 (460)
Q Consensus 294 ~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 345 (460)
..+.. +..+++|+.|.|+.+.+..+. .+..+++|+.|+|
T Consensus 166 -------~~~~~-l~~l~~L~~L~Ls~N~i~~l~-----~l~~l~~L~~L~L 204 (605)
T 1m9s_A 166 -------SDIVP-LAGLTKLQNLYLSKNHISDLR-----ALAGLKNLDVLEL 204 (605)
T ss_dssp -------CCCGG-GTTCTTCCEEECCSSCCCBCG-----GGTTCTTCSEEEC
T ss_pred -------CCchh-hccCCCCCEEECcCCCCCCCh-----HHccCCCCCEEEc
Confidence 01111 567788888888776554432 1556777888888
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.34 E-value=1.2e-07 Score=88.27 Aligned_cols=16 Identities=13% Similarity=0.246 Sum_probs=8.1
Q ss_pred hccCCcccceEeeecc
Q 044491 205 FSICPALEDLSIGHLD 220 (460)
Q Consensus 205 ~~~cp~Le~L~L~~c~ 220 (460)
+..++.|+.|.+.++.
T Consensus 51 ~~~l~~L~~L~L~~n~ 66 (290)
T 1p9a_G 51 LMPYTRLTQLNLDRAE 66 (290)
T ss_dssp GTTCTTCCEEECTTSC
T ss_pred hhcCCCCCEEECCCCc
Confidence 4445555555555544
No 83
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.33 E-value=8.1e-08 Score=100.55 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=17.9
Q ss_pred ccceeEEEEEe--ecCchhHHHHHHHHHhcCcccceEEEEe
Q 044491 394 LLHVKKIEIKK--FEGQKDELGLVKYLLKNCKVLNKVIIRC 432 (460)
Q Consensus 394 ~~~L~~v~i~~--~~~~~~~~~~~~~ll~~a~~Le~l~i~~ 432 (460)
.++|+.+.+.+ +..... ..+.+.+.|+.+.+..
T Consensus 535 l~~L~~L~L~~N~l~~i~~------~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 535 LSHLHILNLESNGFDEIPV------EVFKDLFELKIIDLGL 569 (680)
T ss_dssp CTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCS
T ss_pred CCCCCEEECCCCCCCCCCH------HHcccccCcceeECCC
Confidence 35777777764 222221 1345666777766643
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.33 E-value=5.4e-07 Score=81.15 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=27.7
Q ss_pred cccEEEeceeeeeccCC-CcccCCCCcEEEE-EEE-ECCCccHHHHhccCCcccceEeee
Q 044491 162 TLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VLE-YPDNNLTERLFSICPALEDLSIGH 218 (460)
Q Consensus 162 ~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~~-~~~~~~l~~l~~~cp~Le~L~L~~ 218 (460)
+|+.|+|+++.....++ .+..+++|++|+| +.. +. ..-...+..+++|+.|.+.+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ--QLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC--EECTTTEESCTTCCEEEEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc--eeCHhHcCCCcCCcEEECCC
Confidence 56666666664444433 3345666666666 442 21 11112345566666666665
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.31 E-value=2.2e-07 Score=83.72 Aligned_cols=85 Identities=13% Similarity=0.150 Sum_probs=59.1
Q ss_pred cCceEEEEEeccCcceecCC-ccccCCcccEEEeceee-eeccCC-CcccCCCCcEEEE-EE-EECCCccHHHHhccCCc
Q 044491 136 RNVCEIELFLGSHKLVRLPE-SICTLKTLEVLKLYSDF-VIKIPP-SGLCFRSLKVLTV-VL-EYPDNNLTERLFSICPA 210 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~-~~~~~~-~~~~l~~L~~L~L-~~-~~~~~~~l~~l~~~cp~ 210 (460)
.++++|++.... ...+|. .+..+++|++|+|+++. ....++ .+..+++|++|+| ++ .+. ..-...+..+++
T Consensus 31 ~~l~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~--~i~~~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETH--LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT--YIDPDALKELPL 106 (239)
T ss_dssp TTCCEEEEESCC--CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC--EECTTSEECCTT
T ss_pred CcccEEEEeCCc--ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee--EcCHHHhCCCCC
Confidence 478888886654 344554 45578999999999985 555544 4568999999999 73 332 111245667899
Q ss_pred ccceEeeeccCCCc
Q 044491 211 LEDLSIGHLDDKSL 224 (460)
Q Consensus 211 Le~L~L~~c~~~~~ 224 (460)
|+.|.+.++...++
T Consensus 107 L~~L~l~~n~l~~l 120 (239)
T 2xwt_C 107 LKFLGIFNTGLKMF 120 (239)
T ss_dssp CCEEEEEEECCCSC
T ss_pred CCEEeCCCCCCccc
Confidence 99999999876543
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.30 E-value=6.7e-08 Score=89.04 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=50.9
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
.++++|.+.... ...++ .+..+++|++|+|+++..... +....+++|++|+| ++.+.+ .....+..+++|++|
T Consensus 41 ~~L~~L~l~~~~--i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 41 NSIDQIIANNSD--IKSVQ-GIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQS--LPNGVFDKLTNLKEL 114 (272)
T ss_dssp TTCCEEECTTSC--CCCCT-TGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEE
T ss_pred cceeeeeeCCCC--ccccc-ccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCc--cChhHhcCCcCCCEE
Confidence 467777775433 12222 355678888888888755443 45567788888888 655432 223445677888888
Q ss_pred EeeeccCC
Q 044491 215 SIGHLDDK 222 (460)
Q Consensus 215 ~L~~c~~~ 222 (460)
.+.+|...
T Consensus 115 ~L~~n~l~ 122 (272)
T 3rfs_A 115 VLVENQLQ 122 (272)
T ss_dssp ECTTSCCC
T ss_pred ECCCCcCC
Confidence 88877643
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.29 E-value=1.5e-08 Score=95.32 Aligned_cols=108 Identities=15% Similarity=0.063 Sum_probs=64.5
Q ss_pred ccEEEEEecCCCCcchhhHHHHHHHhcCceEEEEEeccCcceecCCcc--ccCCcccEEEeceeeeeccCCC-----ccc
Q 044491 110 IGKFSLDRWALSDLTRFRSWVDSIIMRNVCEIELFLGSHKLVRLPESI--CTLKTLEVLKLYSDFVIKIPPS-----GLC 182 (460)
Q Consensus 110 l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~~~~~~~-----~~~ 182 (460)
++.+.+.... .....+..........++++|++..+.. ....|..+ ..+++|+.|+|+++......+. ...
T Consensus 66 l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 66 VRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred eeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 5666654322 2333445555555556788888866543 33444444 5678888888888854432111 125
Q ss_pred CCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccC
Q 044491 183 FRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDD 221 (460)
Q Consensus 183 l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 221 (460)
+++|++|+| ++.+. ......++.+++|+.|++.++..
T Consensus 144 ~~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l 181 (310)
T 4glp_A 144 KPGLKVLSIAQAHSP--AFSCEQVRAFPALTSLDLSDNPG 181 (310)
T ss_dssp CSCCCEEEEECCSSC--CCCTTSCCCCTTCCEEECCSCTT
T ss_pred ccCCCEEEeeCCCcc--hhhHHHhccCCCCCEEECCCCCC
Confidence 778888888 66553 22234456778888888888763
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.24 E-value=6.6e-09 Score=100.13 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=36.5
Q ss_pred HHHHhhcC-cceeEEEEeccchhhhhhh-ccccCCC-CCceeEEEEEEeccCc---ccHHHHHhcCCCCCeEEEeec
Q 044491 303 AQRLLNSL-TKAKFLALSADTVYALDKI-YKDVFPK-FPNVTCLAVKVELFGW---RLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 303 ~~~~l~~l-~~l~~L~l~~~~~~~~~~~-~~~~~~~-~~~L~~L~L~~~~~~~---~~l~~~l~~~p~L~~L~I~~~ 373 (460)
+...+..+ ++|+.|+++.+.+...+.. ....+.. .++|+.|+|.....+. ..+..++..+++|++|+++++
T Consensus 187 l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 187 LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 34445555 3777777777554331110 0000111 2467777772222222 334555667777777777776
No 89
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.23 E-value=9.3e-08 Score=81.11 Aligned_cols=105 Identities=19% Similarity=0.062 Sum_probs=69.2
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
.++++|++..+......+|..+..+++|+.|+|++|..... ..+..+++|++|+| ++.+.+ .+..++..+|+|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFG--GLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCS--CCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCch--HHHHHHhhCCCCCEE
Confidence 46788887655432246777767788888888888865444 56667888888888 776653 245666678888888
Q ss_pred EeeeccCCCceeE--EEeccccceEEEEeec
Q 044491 215 SIGHLDDKSLINF--NISSTTLKRLCLSFTN 243 (460)
Q Consensus 215 ~L~~c~~~~~~~~--~i~~~~L~~L~l~~~~ 243 (460)
++.+|...++..+ --..++|+.|.+.++.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 8888876543211 1123456666666654
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.21 E-value=6.3e-08 Score=89.23 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=32.8
Q ss_pred hhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 307 LNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 307 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
+..+++|+.|.++.+.+.... +..+..+++|+.|++ .+.. ...||+|+.|.+...
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~---------~~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVP---DGVFDRLTSLQYIWLHDNPW---------DCTCPGIRYLSEWIN 232 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCB---------CCCTTTTHHHHHHHH
T ss_pred hcCCccCCEEECCCCcCCccC---HHHHhCCcCCCEEEccCCCc---------cccCcHHHHHHHHHH
Confidence 456778888888775543221 222456778888888 3321 133677777766554
No 91
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.21 E-value=4e-07 Score=83.40 Aligned_cols=142 Identities=20% Similarity=0.202 Sum_probs=82.4
Q ss_pred cccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEEeccccc
Q 044491 157 ICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNISSTTLK 235 (460)
Q Consensus 157 l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~ 235 (460)
+..+++|+.|+++++..... +....+++|++|+| ++.+.+-. . +..+++|+.|++.++...++..+.. ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~L~~N~i~~~~---~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLS---P-LKDLTKLEELSVNRNRLKNLNGIPS--ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCG---G-GTTCSSCCEEECCSSCCSCCTTCCC--SSCC
T ss_pred hhhcCcCcEEECcCCCcccc-hHHhhCCCCCEEECCCCccCCCh---h-hccCCCCCEEECCCCccCCcCcccc--Cccc
Confidence 34567888888888855444 45667888888888 66654322 2 6778888888888887654322211 4555
Q ss_pred eEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceEEeecCCCeeEEEEEEEecCCccccccccHHHHhhcCcceeE
Q 044491 236 RLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYMFHELPPFTKVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKF 315 (460)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 315 (460)
.|.+.++.-... . ....+++|+.|+++++.. ..+ ..+..+++|+.
T Consensus 110 ~L~L~~N~l~~~----~-~l~~l~~L~~L~Ls~N~i-----------------------------~~~-~~l~~l~~L~~ 154 (263)
T 1xeu_A 110 RLFLDNNELRDT----D-SLIHLKNLEILSIRNNKL-----------------------------KSI-VMLGFLSKLEV 154 (263)
T ss_dssp EEECCSSCCSBS----G-GGTTCTTCCEEECTTSCC-----------------------------CBC-GGGGGCTTCCE
T ss_pred EEEccCCccCCC----h-hhcCcccccEEECCCCcC-----------------------------CCC-hHHccCCCCCE
Confidence 555555531000 0 001233444444433311 011 13567788888
Q ss_pred EEEeccchhhhhhhccccCCCCCceeEEEE
Q 044491 316 LALSADTVYALDKIYKDVFPKFPNVTCLAV 345 (460)
Q Consensus 316 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 345 (460)
|.++.+.+... ..+..+++|+.|++
T Consensus 155 L~L~~N~i~~~-----~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 155 LDLHGNEITNT-----GGLTRLKKVNWIDL 179 (263)
T ss_dssp EECTTSCCCBC-----TTSTTCCCCCEEEE
T ss_pred EECCCCcCcch-----HHhccCCCCCEEeC
Confidence 88888655443 22566778888888
No 92
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.20 E-value=2.4e-07 Score=85.22 Aligned_cols=83 Identities=20% Similarity=0.247 Sum_probs=58.6
Q ss_pred cCceEEEEEeccCcceecCC-ccccCCcccEEEeceeeeeccCCCc-ccCCCCcEEEE-EEEECCCccHHHHhccCCccc
Q 044491 136 RNVCEIELFLGSHKLVRLPE-SICTLKTLEVLKLYSDFVIKIPPSG-LCFRSLKVLTV-VLEYPDNNLTERLFSICPALE 212 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~~~~-~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 212 (460)
.++++|++.... ...++. .+..+++|++|+|+++.....++.. ..+++|++|+| ...+.. .-...+..+++|+
T Consensus 37 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 37 ADTKKLDLQSNK--LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA--LPIGVFDQLVNLA 112 (270)
T ss_dssp TTCSEEECCSSC--CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC--CCTTTTTTCSSCC
T ss_pred CCCCEEECcCCC--CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc--CCHhHcccccCCC
Confidence 468888885544 234443 5567899999999998665654443 57899999999 665542 1224567789999
Q ss_pred ceEeeeccCC
Q 044491 213 DLSIGHLDDK 222 (460)
Q Consensus 213 ~L~L~~c~~~ 222 (460)
.|.+.++...
T Consensus 113 ~L~l~~n~l~ 122 (270)
T 2o6q_A 113 ELRLDRNQLK 122 (270)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCccC
Confidence 9999988654
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.20 E-value=1.7e-07 Score=96.17 Aligned_cols=100 Identities=23% Similarity=0.202 Sum_probs=67.3
Q ss_pred hcCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccc
Q 044491 135 MRNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALED 213 (460)
Q Consensus 135 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 213 (460)
..++++|+|..+. ...++. +..+++|+.|+|++|..... +.+..+++|+.|+| .+.+.+- .-+..+|+|+.
T Consensus 64 l~~L~~L~Ls~N~--l~~~~~-l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~ 135 (605)
T 1m9s_A 64 LPNVTKLFLNGNK--LTDIKP-LTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDI----NGLVHLPQLES 135 (605)
T ss_dssp CTTCCEEECTTSC--CCCCGG-GGGCTTCCEEECCSSCCCCC-TTSTTCTTCCEEECTTSCCCCC----GGGGGCTTCSE
T ss_pred CCCCCEEEeeCCC--CCCChh-hccCCCCCEEECcCCCCCCC-hhhccCCCCCEEEecCCCCCCC----ccccCCCccCE
Confidence 3578888885543 223333 66789999999999865554 56778999999999 7766542 23667899999
Q ss_pred eEeeeccCCCceeEEEeccccceEEEEeec
Q 044491 214 LSIGHLDDKSLINFNISSTTLKRLCLSFTN 243 (460)
Q Consensus 214 L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~ 243 (460)
|.|.+|...++..+ -..++|+.|.+.+|.
T Consensus 136 L~Ls~N~l~~l~~l-~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 136 LYLGNNKITDITVL-SRLTKLDTLSLEDNQ 164 (605)
T ss_dssp EECCSSCCCCCGGG-GSCTTCSEEECCSSC
T ss_pred EECCCCccCCchhh-cccCCCCEEECcCCc
Confidence 99999876543111 122456666665553
No 94
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.16 E-value=3.6e-07 Score=95.55 Aligned_cols=84 Identities=18% Similarity=0.135 Sum_probs=36.8
Q ss_pred cCceEEEEEeccCcceecCCccc---cCCcccEEEeceeeeeccC-CCcccCCCCcEEEE-EEEECCCccHHHHhccCCc
Q 044491 136 RNVCEIELFLGSHKLVRLPESIC---TLKTLEVLKLYSDFVIKIP-PSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPA 210 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~---~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~ 210 (460)
.++++|++..+......++...+ ..++|+.|+|++|.....+ ..+..+++|+.|+| .+.+.+ ..-...+.++++
T Consensus 353 ~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~l~~ 431 (680)
T 1ziw_A 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ-ELTGQEWRGLEN 431 (680)
T ss_dssp TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE-ECCSGGGTTCTT
T ss_pred cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc-ccCcccccCccc
Confidence 46777777433211222222211 1245666666655433332 23335556666666 433211 001123445555
Q ss_pred ccceEeeecc
Q 044491 211 LEDLSIGHLD 220 (460)
Q Consensus 211 Le~L~L~~c~ 220 (460)
|++|++.+|.
T Consensus 432 L~~L~Ls~n~ 441 (680)
T 1ziw_A 432 IFEIYLSYNK 441 (680)
T ss_dssp CCEEECCSCS
T ss_pred ccEEecCCCC
Confidence 5555555553
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.16 E-value=2e-07 Score=81.38 Aligned_cols=79 Identities=15% Similarity=0.014 Sum_probs=42.8
Q ss_pred CceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceE
Q 044491 137 NVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLS 215 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~ 215 (460)
++++|++..... ..+| .+..+++|++|++++|.... ++....+++|++|+| ++.+.+ .....++.+|+|+.|.
T Consensus 45 ~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~l~~n~~~~-~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 45 SLTYITLANINV--TDLT-GIEYAHNIKDLTINNIHATN-YNPISGLSNLERLRIMGKDVTS--DKIPNLSGLTSLTLLD 118 (197)
T ss_dssp TCCEEEEESSCC--SCCT-TGGGCTTCSEEEEESCCCSC-CGGGTTCTTCCEEEEECTTCBG--GGSCCCTTCTTCCEEE
T ss_pred CccEEeccCCCc--cChH-HHhcCCCCCEEEccCCCCCc-chhhhcCCCCCEEEeECCccCc--ccChhhcCCCCCCEEE
Confidence 566666655432 2344 35556677777777663322 234456666777766 544331 1112244566666666
Q ss_pred eeeccC
Q 044491 216 IGHLDD 221 (460)
Q Consensus 216 L~~c~~ 221 (460)
+.+|..
T Consensus 119 Ls~n~i 124 (197)
T 4ezg_A 119 ISHSAH 124 (197)
T ss_dssp CCSSBC
T ss_pred ecCCcc
Confidence 666654
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.13 E-value=2.2e-06 Score=87.04 Aligned_cols=114 Identities=16% Similarity=0.196 Sum_probs=72.0
Q ss_pred hcCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccc
Q 044491 135 MRNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALED 213 (460)
Q Consensus 135 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 213 (460)
..+++.|++..... ..+|..++ ++|+.|+|++|....+ | ..+++|++|+| ++.+.+ +.. +. .+|+.
T Consensus 58 ~~~L~~L~Ls~n~L--~~lp~~l~--~~L~~L~Ls~N~l~~i-p--~~l~~L~~L~Ls~N~l~~---ip~-l~--~~L~~ 124 (571)
T 3cvr_A 58 INQFSELQLNRLNL--SSLPDNLP--PQITVLEITQNALISL-P--ELPASLEYLDACDNRLST---LPE-LP--ASLKH 124 (571)
T ss_dssp HTTCSEEECCSSCC--SCCCSCCC--TTCSEEECCSSCCSCC-C--CCCTTCCEEECCSSCCSC---CCC-CC--TTCCE
T ss_pred cCCccEEEeCCCCC--CccCHhHc--CCCCEEECcCCCCccc-c--cccCCCCEEEccCCCCCC---cch-hh--cCCCE
Confidence 34788888865442 33666553 6788888888865554 3 45788888888 665542 222 22 27888
Q ss_pred eEeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeee
Q 044491 214 LSIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCM 271 (460)
Q Consensus 214 L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 271 (460)
|.+.+|...++.. ..++|+.|.+.++.- .+ +.. ..++|+.|+++++..
T Consensus 125 L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l---~~-lp~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 125 LDVDNNQLTMLPE---LPALLEYINADNNQL---TM-LPE---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp EECCSSCCSCCCC---CCTTCCEEECCSSCC---SC-CCC---CCTTCCEEECCSSCC
T ss_pred EECCCCcCCCCCC---cCccccEEeCCCCcc---Cc-CCC---cCCCcCEEECCCCCC
Confidence 8888887655443 456788888777751 11 122 456777777777643
No 97
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.12 E-value=5.1e-07 Score=89.54 Aligned_cols=191 Identities=16% Similarity=0.077 Sum_probs=124.1
Q ss_pred CceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceE
Q 044491 137 NVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLS 215 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~ 215 (460)
++++|++..... ..+| .+..+++|+.|++++|.....+. ..++|++|++ ++.+.. +.. +..+++|+.|+
T Consensus 174 ~L~~L~L~~n~l--~~l~-~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~n~l~~---lp~-~~~l~~L~~L~ 243 (454)
T 1jl5_A 174 SLEFIAAGNNQL--EELP-ELQNLPFLTAIYADNNSLKKLPD---LPLSLESIVAGNNILEE---LPE-LQNLPFLTTIY 243 (454)
T ss_dssp TCCEEECCSSCC--SSCC-CCTTCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSS---CCC-CTTCTTCCEEE
T ss_pred cccEEECcCCcC--CcCc-cccCCCCCCEEECCCCcCCcCCC---CcCcccEEECcCCcCCc---ccc-cCCCCCCCEEE
Confidence 799999966542 3356 57788999999999996554422 2369999999 775542 222 66899999999
Q ss_pred eeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceEEeecCCCeeEEEEEEEecCCc
Q 044491 216 IGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYMFHELPPFTKVFIDIFYDDGW 295 (460)
Q Consensus 216 L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~~~~~ 295 (460)
+.++...++.. ..++|+.|.+.++.-.. +....++|+.|+++++...... .-.++|+.+++....
T Consensus 244 l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-------l~~~~~~L~~L~ls~N~l~~l~-~~~~~L~~L~l~~N~---- 308 (454)
T 1jl5_A 244 ADNNLLKTLPD---LPPSLEALNVRDNYLTD-------LPELPQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNE---- 308 (454)
T ss_dssp CCSSCCSSCCS---CCTTCCEEECCSSCCSC-------CCCCCTTCCEEECCSSCCSEES-CCCTTCCEEECCSSC----
T ss_pred CCCCcCCcccc---cccccCEEECCCCcccc-------cCcccCcCCEEECcCCccCccc-CcCCcCCEEECcCCc----
Confidence 99987655432 23789999998885221 1112488999999887543211 123577777663221
Q ss_pred cccccccHHHHhhcC-cceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeec
Q 044491 296 SWVQSGRAQRLLNSL-TKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 296 ~~~~~~~~~~~l~~l-~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~ 373 (460)
+.. +..+ ++++.|+++.+.+... ...+++|+.|++ .+.-. .++. .+++|++|++.++
T Consensus 309 -------l~~-i~~~~~~L~~L~Ls~N~l~~l-------p~~~~~L~~L~L~~N~l~---~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 309 -------IRS-LCDLPPSLEELNVSNNKLIEL-------PALPPRLERLIASFNHLA---EVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp -------CSE-ECCCCTTCCEEECCSSCCSCC-------CCCCTTCCEEECCSSCCS---CCCC---CCTTCCEEECCSS
T ss_pred -------CCc-ccCCcCcCCEEECCCCccccc-------cccCCcCCEEECCCCccc---cccc---hhhhccEEECCCC
Confidence 111 1123 5889999988654332 233578999999 44222 2222 4689999999876
No 98
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.12 E-value=6.4e-07 Score=88.85 Aligned_cols=133 Identities=11% Similarity=0.090 Sum_probs=72.0
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
.++++|++..+.. ..+| .+..+++|++|+++++.....+. ..++|++|+| ++.+.+ +. -+..+++|+.|
T Consensus 131 ~~L~~L~L~~n~l--~~lp-~~~~l~~L~~L~l~~N~l~~lp~---~~~~L~~L~L~~n~l~~---l~-~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLEE---LP-ELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSSCC--SSCC-CCTTCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS---CC-CCTTCTTCCEE
T ss_pred CCCCEEECcCCCC--CCCc-ccCCCCCCCEEECCCCcCcccCC---CcccccEEECcCCcCCc---Cc-cccCCCCCCEE
Confidence 3677777754432 2355 45667777777777775443321 2357777777 555442 22 25667777777
Q ss_pred EeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceEEeecCCCeeEEEE
Q 044491 215 SIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYMFHELPPFTKVFI 287 (460)
Q Consensus 215 ~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l 287 (460)
.+.+|...++.. ..++|+.|.+.++.-. .+.. ....++|+.|+++++...... ...++|+.+++
T Consensus 201 ~l~~N~l~~l~~---~~~~L~~L~l~~n~l~----~lp~-~~~l~~L~~L~l~~N~l~~l~-~~~~~L~~L~l 264 (454)
T 1jl5_A 201 YADNNSLKKLPD---LPLSLESIVAGNNILE----ELPE-LQNLPFLTTIYADNNLLKTLP-DLPPSLEALNV 264 (454)
T ss_dssp ECCSSCCSSCCC---CCTTCCEEECCSSCCS----SCCC-CTTCTTCCEEECCSSCCSSCC-SCCTTCCEEEC
T ss_pred ECCCCcCCcCCC---CcCcccEEECcCCcCC----cccc-cCCCCCCCEEECCCCcCCccc-ccccccCEEEC
Confidence 777776543322 1246777777766421 1111 124566777777665432111 12345665555
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.09 E-value=8e-08 Score=92.48 Aligned_cols=222 Identities=13% Similarity=0.052 Sum_probs=119.3
Q ss_pred CCccccCCcccEEEeceeeeeccCC-----CcccCC-CCcEEEE-EEEECCC--ccHHHHhccC-CcccceEeeeccCCC
Q 044491 154 PESICTLKTLEVLKLYSDFVIKIPP-----SGLCFR-SLKVLTV-VLEYPDN--NLTERLFSIC-PALEDLSIGHLDDKS 223 (460)
Q Consensus 154 p~~l~~~~~L~~L~L~~~~~~~~~~-----~~~~l~-~L~~L~L-~~~~~~~--~~l~~l~~~c-p~Le~L~L~~c~~~~ 223 (460)
|..+...++|++|+|++|...+.++ .+..++ +|++|+| ++.+.+. ..+..++..+ +.|++|++.+|...+
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 3333445669999999996555432 233677 8999999 7766542 2344555554 899999999987542
Q ss_pred ceeEEE-----ec-cccceEEEEeecCccccCCcee-EE--E-e-cCCceeEEEeeeeeceEEeecCCCeeEEEEEEEec
Q 044491 224 LINFNI-----SS-TTLKRLCLSFTNGVAYSNNWHK-VM--I-A-TPNLELLNIHDFCMVSYMFHELPPFTKVFIDIFYD 292 (460)
Q Consensus 224 ~~~~~i-----~~-~~L~~L~l~~~~~~~~~~~~~~-~~--~-~-~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~~ 292 (460)
.....+ .. ++|+.|.+.+|.- ...... +. + . .++|++|+++++...
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l---~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-------------------- 151 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDF---SSKSSSEFKQAFSNLPASITSLNLRGNDLG-------------------- 151 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCG---GGSCHHHHHHHHTTSCTTCCEEECTTSCGG--------------------
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcC---CcHHHHHHHHHHHhCCCceeEEEccCCcCC--------------------
Confidence 211100 11 4666666666641 100000 00 0 0 135555555544210
Q ss_pred CCccccccccHHHHhhcCc-ceeEEEEeccchhhhhh-hccccCCCC-CceeEEEE-EEe--ccCcccHHHHHhc-CCCC
Q 044491 293 DGWSWVQSGRAQRLLNSLT-KAKFLALSADTVYALDK-IYKDVFPKF-PNVTCLAV-KVE--LFGWRLLPIILSS-LPNL 365 (460)
Q Consensus 293 ~~~~~~~~~~~~~~l~~l~-~l~~L~l~~~~~~~~~~-~~~~~~~~~-~~L~~L~L-~~~--~~~~~~l~~~l~~-~p~L 365 (460)
-.....+...+..++ +++.|.++.+.+..... .....+..+ ++|+.|+| .+. ......+...+.. +++|
T Consensus 152 ----~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 152 ----IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp ----GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred ----HHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence 000123445556666 99999999876543221 111123345 48999999 443 2223336666666 5699
Q ss_pred CeEEEeecccccccCcccccCCCCCcccccceeEEEEEeec
Q 044491 366 EEFVFEKKLSCHFEEFGWIEQPNIPLCLLLHVKKIEIKKFE 406 (460)
Q Consensus 366 ~~L~I~~~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i~~~~ 406 (460)
++|++.++.-.. .+. ......-....+|+.+.+.+..
T Consensus 228 ~~L~Ls~N~l~~-~~~---~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 228 VSLNLCLNCLHG-PSL---ENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CEEECCSSCCCC-CCH---HHHHHTTTTTTTCSEEEEEHHH
T ss_pred eEEECcCCCCCc-HHH---HHHHHHHhcCCCccEEEeccCC
Confidence 999999862211 000 0000000123679999988643
No 100
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.07 E-value=3.5e-07 Score=85.08 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=38.2
Q ss_pred CcccEEEeceeeeeccC-CCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEEeccccceEE
Q 044491 161 KTLEVLKLYSDFVIKIP-PSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNISSTTLKRLC 238 (460)
Q Consensus 161 ~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~ 238 (460)
++|+.|+|+++.....+ ..+..+++|++|+| ...+.. +.. ...+++|+.|++.++....+....-..++|+.|.
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE---EEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc---ccC-CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEE
Confidence 46666666666443331 23445666666666 443332 111 1456666666666665432221111124555555
Q ss_pred EEee
Q 044491 239 LSFT 242 (460)
Q Consensus 239 l~~~ 242 (460)
+.++
T Consensus 107 l~~N 110 (290)
T 1p9a_G 107 VSFN 110 (290)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5554
No 101
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.06 E-value=1.1e-07 Score=78.89 Aligned_cols=104 Identities=22% Similarity=0.093 Sum_probs=68.4
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
.++++|++..+......+|..+..+++|+.|++++|..... .....+++|++|+| ++.+.+ .+...+..+++|+.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG--GLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCS--CTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccc--hHHHHhhhCCCCCEE
Confidence 46778877555432246777777788999999998865554 56677888999999 776653 256667778899999
Q ss_pred EeeeccCCCcee--EEEeccccceEEEEee
Q 044491 215 SIGHLDDKSLIN--FNISSTTLKRLCLSFT 242 (460)
Q Consensus 215 ~L~~c~~~~~~~--~~i~~~~L~~L~l~~~ 242 (460)
++.+|...+... .--..++|+.|.+.++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 998887544211 0011245555555554
No 102
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.00 E-value=1.1e-06 Score=74.40 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=30.5
Q ss_pred CcccEEEeceeeee--ccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeecc
Q 044491 161 KTLEVLKLYSDFVI--KIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLD 220 (460)
Q Consensus 161 ~~L~~L~L~~~~~~--~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 220 (460)
++|+.|+|++|... ..+..+..+++|++|+| ++.+.+. ..+..+++|+.|++.+|.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENR 82 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCc
Confidence 67788888877544 33333345666666666 4443321 334445555555555554
No 103
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.97 E-value=2.3e-06 Score=78.25 Aligned_cols=37 Identities=27% Similarity=0.520 Sum_probs=34.6
Q ss_pred cccCCCChHHHHHHhcCCcchhee-ecccchhhhHhhc
Q 044491 17 DRISQLPDGILCHILSFLPIKCAL-ATCILSSRWKFVW 53 (460)
Q Consensus 17 D~is~LPd~iL~~Ils~L~~~d~~-~~s~vskrWr~lw 53 (460)
..+..||+|+|.+||++||.++++ +++.|||+||.+.
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence 468899999999999999999999 9999999999864
No 104
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.97 E-value=5.8e-07 Score=74.43 Aligned_cols=58 Identities=14% Similarity=0.041 Sum_probs=35.8
Q ss_pred CCcccEEEeceeeee--ccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccC
Q 044491 160 LKTLEVLKLYSDFVI--KIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDD 221 (460)
Q Consensus 160 ~~~L~~L~L~~~~~~--~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 221 (460)
.++|+.|++++|... ..+..+..+++|++|+| ++.+.+. ..+..++.|+.|++.+|..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i 76 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRV 76 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCcc
Confidence 367888888888554 34444456777777777 5544321 4455566666666666653
No 105
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.94 E-value=9.8e-07 Score=76.97 Aligned_cols=68 Identities=24% Similarity=0.242 Sum_probs=46.2
Q ss_pred eecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCC
Q 044491 151 VRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDK 222 (460)
Q Consensus 151 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~ 222 (460)
..+|..+..+++|+.|+|+++..... +....+++|++|+| ++.+.+ +...+..+|+|+.|++.+|...
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l-~~~~~l~~L~~L~l~~n~l~~---l~~~~~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKK---IENLDAVADTLEELWISYNQIA 106 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCC-CCHHHHTTCCEEEEEEEEECS---CSSHHHHHHHCSEEEEEEEECC
T ss_pred hhhhHHHhcCCCCCEEECCCCCCccc-cccccCCCCCEEECCCCCccc---ccchhhcCCcCCEEECcCCcCC
Confidence 33444666778888888888866555 46667888888888 776652 3345555677777777777643
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.94 E-value=1.5e-06 Score=78.84 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=42.3
Q ss_pred eecCCccccCCcccEEEeceeeeeccCC-CcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCC
Q 044491 151 VRLPESICTLKTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDK 222 (460)
Q Consensus 151 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~ 222 (460)
..+|..+. ++|+.|+|+++.....++ .+..+++|++|+| +..+.+ .....+..+++|+.|++.++...
T Consensus 27 ~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 27 DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT--LSAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTSCCC
T ss_pred cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc--cCHhHhccCCcCCEEECCCCccc
Confidence 34554433 578888888875544433 3456788888888 655442 22344566778888888777643
No 107
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=1.9e-06 Score=72.82 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=57.6
Q ss_pred eecCCccccCCcccEEEeceeeeecc-CCCcccCCCCcEEEE-EEEECCCccHHHHhcc---CCcccceEeeeccCC---
Q 044491 151 VRLPESICTLKTLEVLKLYSDFVIKI-PPSGLCFRSLKVLTV-VLEYPDNNLTERLFSI---CPALEDLSIGHLDDK--- 222 (460)
Q Consensus 151 ~~lp~~l~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~---cp~Le~L~L~~c~~~--- 222 (460)
..+|..-.....|++|+|++|...+. .....+|++|++|+| +|...+|.++..+... |+.|++|+|.+|...
T Consensus 51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 34555333445789999998854332 123357888888888 8876667777777763 778888888888632
Q ss_pred CceeEEEeccccceEEEEeec
Q 044491 223 SLINFNISSTTLKRLCLSFTN 243 (460)
Q Consensus 223 ~~~~~~i~~~~L~~L~l~~~~ 243 (460)
++..+. ..++|++|.+.+|.
T Consensus 131 Gl~~L~-~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALH-HFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGG-GCTTCCEEEEESCT
T ss_pred HHHHHh-cCCCCCEEECCCCC
Confidence 121121 23556666665554
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.88 E-value=3.3e-06 Score=79.17 Aligned_cols=178 Identities=13% Similarity=-0.014 Sum_probs=91.4
Q ss_pred cCceEEEEEeccCcceecC----CccccCCcccEEEeceeeeeccCC-CcccCCCCcEEEE-EEEECCCccHH--HHhcc
Q 044491 136 RNVCEIELFLGSHKLVRLP----ESICTLKTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VLEYPDNNLTE--RLFSI 207 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp----~~l~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~~~~~~~~l~--~l~~~ 207 (460)
.++++|++....... ..+ ..+..+++|++|+|++|.....++ .+..+++|++|+| ++.+.+..++. ..+..
T Consensus 117 ~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 117 LALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp BCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred CCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 467777775543211 111 122356777777777775544432 3446777777777 55433211121 11246
Q ss_pred CCcccceEeeeccCCCceeE----EEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceEEeecCCCee
Q 044491 208 CPALEDLSIGHLDDKSLINF----NISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYMFHELPPFT 283 (460)
Q Consensus 208 cp~Le~L~L~~c~~~~~~~~----~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~p~L~ 283 (460)
+|+|++|.+.+|........ .-..++|+.|.+.++.-..............++|++|+++++........-.++|+
T Consensus 196 l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~ 275 (310)
T 4glp_A 196 FPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLR 275 (310)
T ss_dssp SCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCS
T ss_pred CCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCC
Confidence 77777777777765332221 01225777777777642111000000001126788888777654322222235777
Q ss_pred EEEEEEEecCCccccccccHHHHhhcCcceeEEEEeccch
Q 044491 284 KVFIDIFYDDGWSWVQSGRAQRLLNSLTKAKFLALSADTV 323 (460)
Q Consensus 284 ~l~l~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 323 (460)
.+++..... ..+ ..+..+++++.|.++++.+
T Consensus 276 ~L~Ls~N~l--------~~~-~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 276 VLDLSSNRL--------NRA-PQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CEECCSCCC--------CSC-CCTTSCCCCSCEECSSTTT
T ss_pred EEECCCCcC--------CCC-chhhhCCCccEEECcCCCC
Confidence 766632221 011 1246778899998887543
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.85 E-value=1e-05 Score=77.29 Aligned_cols=218 Identities=15% Similarity=0.116 Sum_probs=123.2
Q ss_pred cCceEEEEEeccCcceecCCc-cccCCcccEEEeceeeeec-cCC-CcccCCCCcEEEE-EEEECCCccHHHHhccCCcc
Q 044491 136 RNVCEIELFLGSHKLVRLPES-ICTLKTLEVLKLYSDFVIK-IPP-SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPAL 211 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~~~-~~~-~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~L 211 (460)
.++++|++.... ...+|.. +..+++|++|+|+++.... .++ .+.++++|+++.. ...-.. ..-...+..+++|
T Consensus 30 ~~l~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCC--CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTC
T ss_pred CCCCEEEccCCc--CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCchhhhhcccc
Confidence 478999987654 4567765 4568999999999986433 322 3457788776555 432111 1113456788999
Q ss_pred cceEeeeccCCCceeEE-EeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceEEee--cCCCeeEEEEE
Q 044491 212 EDLSIGHLDDKSLINFN-ISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYMFH--ELPPFTKVFID 288 (460)
Q Consensus 212 e~L~L~~c~~~~~~~~~-i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~--~~p~L~~l~l~ 288 (460)
+.|.+.++......... ....++..|.+.++........ ..+......++.|.++++........ ...+|.++.+
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~-~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l- 184 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER-NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL- 184 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT-TSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEEC-
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccc-cchhhcchhhhhhccccccccCCChhhccccchhHHhh-
Confidence 99999998765432211 2334566666665531110000 00011124678888887654322222 2223333333
Q ss_pred EEecCCccccccccH-HHHhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCC
Q 044491 289 IFYDDGWSWVQSGRA-QRLLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLE 366 (460)
Q Consensus 289 ~~~~~~~~~~~~~~~-~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~ 366 (460)
...+.. ..+ ...+.++++|+.|+++.+.+..++ ...|.+|++|.+ .+.. ...++. +..+++|+
T Consensus 185 -~~~n~l-----~~i~~~~f~~l~~L~~LdLs~N~l~~lp------~~~~~~L~~L~~l~~~~--l~~lP~-l~~l~~L~ 249 (350)
T 4ay9_X 185 -SDNNNL-----EELPNDVFHGASGPVILDISRTRIHSLP------SYGLENLKKLRARSTYN--LKKLPT-LEKLVALM 249 (350)
T ss_dssp -TTCTTC-----CCCCTTTTTTEECCSEEECTTSCCCCCC------SSSCTTCCEEECTTCTT--CCCCCC-TTTCCSCC
T ss_pred -ccCCcc-----cCCCHHHhccCcccchhhcCCCCcCccC------hhhhccchHhhhccCCC--cCcCCC-chhCcChh
Confidence 110000 111 234678899999999987654432 224778888887 4432 223333 57788999
Q ss_pred eEEEeec
Q 044491 367 EFVFEKK 373 (460)
Q Consensus 367 ~L~I~~~ 373 (460)
.+++...
T Consensus 250 ~l~l~~~ 256 (350)
T 4ay9_X 250 EASLTYP 256 (350)
T ss_dssp EEECSCH
T ss_pred hCcCCCC
Confidence 9998653
No 110
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.85 E-value=1.1e-05 Score=77.16 Aligned_cols=121 Identities=16% Similarity=0.144 Sum_probs=71.7
Q ss_pred HHHHHHHhhccCCCCcccEEEEEecCCCCc----chhhHHHHHHH-hcCceEEEEEeccCc--------ceecCCccccC
Q 044491 94 FENFVTRVLHLTNPTAIGKFSLDRWALSDL----TRFRSWVDSII-MRNVCEIELFLGSHK--------LVRLPESICTL 160 (460)
Q Consensus 94 ~~~~v~~~l~~~~~~~l~~l~l~~~~~~~~----~~~~~wi~~~~-~~~l~~L~l~~~~~~--------~~~lp~~l~~~ 160 (460)
+.+.+.+++.......++.+.+.... .++ ..+..+...+. -.++++|.+...... ...+...+..+
T Consensus 93 ~~~~~~~fl~~~~~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~ 171 (362)
T 2ra8_A 93 GVNLMDKILKDKKLPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM 171 (362)
T ss_dssp TCCHHHHHHHCTTGGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTC
T ss_pred HHHHHHHHhcCCCchhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcC
Confidence 44556666766666667777777433 221 12333332221 148999988432110 11244445567
Q ss_pred CcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhc-cCCcccceEeee
Q 044491 161 KTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFS-ICPALEDLSIGH 218 (460)
Q Consensus 161 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~-~cp~Le~L~L~~ 218 (460)
|+|+.|+|+++.....++ ...++|++|.| .+... +..+..+.. .+|+|+.|.|..
T Consensus 172 P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~-~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLP-DSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp TTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCC-HHHHHHHHHSBCTTCCEEEEEC
T ss_pred CCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCC-hHHHHHHHHccCCCCcEEEEec
Confidence 899999998873233322 34889999999 66554 455655553 689999998864
No 111
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.80 E-value=1.9e-06 Score=78.23 Aligned_cols=102 Identities=22% Similarity=0.164 Sum_probs=60.2
Q ss_pred CceEEEEEeccCcceec-CCccccCCcccEEEeceeeeeccCCC-cccCCCCcEEEE-EEEECCCccHHHHhccCCcccc
Q 044491 137 NVCEIELFLGSHKLVRL-PESICTLKTLEVLKLYSDFVIKIPPS-GLCFRSLKVLTV-VLEYPDNNLTERLFSICPALED 213 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 213 (460)
++++|++.... ...+ +..+..+++|++|+|+++.....++. +..+++|++|+| +..+.. .....+..+++|+.
T Consensus 36 ~l~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 36 DTEKLDLQSTG--LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS--LPLGVFDHLTQLDK 111 (251)
T ss_dssp TCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCE
T ss_pred CCCEEEccCCC--cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc--cChhHhcccCCCCE
Confidence 56777774433 2223 23455678888888888865554333 457888888888 665542 22345667888888
Q ss_pred eEeeeccCCCceeEEE-eccccceEEEEee
Q 044491 214 LSIGHLDDKSLINFNI-SSTTLKRLCLSFT 242 (460)
Q Consensus 214 L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~ 242 (460)
|.|.++...++..-.+ ..++|+.|.+.++
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 8888876543221111 1245555555554
No 112
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.76 E-value=3.5e-06 Score=76.12 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=32.6
Q ss_pred ccCCCChHHHHHHhcCCcchheeecccchhhhHhh
Q 044491 18 RISQLPDGILCHILSFLPIKCALATCILSSRWKFV 52 (460)
Q Consensus 18 ~is~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~l 52 (460)
.|+.||+||+.+|||||+.+|+++++.|||+||.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999964
No 113
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.75 E-value=2e-05 Score=81.37 Aligned_cols=130 Identities=22% Similarity=0.193 Sum_probs=82.4
Q ss_pred cCceEEEEEeccCcceecCC-ccccCCcccEEEeceeeeeccCCC-cccCCCCcEEEE-EEEECCCccHHHHhccCCccc
Q 044491 136 RNVCEIELFLGSHKLVRLPE-SICTLKTLEVLKLYSDFVIKIPPS-GLCFRSLKVLTV-VLEYPDNNLTERLFSICPALE 212 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 212 (460)
.++++|+|.... ...+|. .+..+++|++|+|++|.....++. +.++++|++|+| ++.+.. .-...+.++++|+
T Consensus 52 ~~~~~LdLs~N~--i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~--l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 52 FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQ 127 (635)
T ss_dssp TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECGGGGTTCTTCC
T ss_pred cCCCEEEeeCCC--CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC--CCHHHhcCCCCCC
Confidence 478888885543 445554 456789999999999866555443 567899999999 665431 1234577889999
Q ss_pred ceEeeeccCCCceeEEEe-ccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeee
Q 044491 213 DLSIGHLDDKSLINFNIS-STTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCM 271 (460)
Q Consensus 213 ~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 271 (460)
+|.+.+|...++....+. .++|+.|.+.++.-... .........++|+.|+++++..
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~--~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC--CCCGGGGGCTTCCEEECCSSCC
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccC--CCchhhccchhhhhhcccCccc
Confidence 999998876554332222 35788887777641100 0011122356777777776543
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.71 E-value=1e-05 Score=73.84 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=89.6
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
.++++|++..+. ...++ .+..+++|+.|+|+++.....++ ...+++|++|+| ++.+.+- ..+. . +.|+.|
T Consensus 41 ~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l---~~~~-~-~~L~~L 111 (263)
T 1xeu_A 41 SGVQNFNGDNSN--IQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNL---NGIP-S-ACLSRL 111 (263)
T ss_dssp TTCSEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCC---TTCC-C-SSCCEE
T ss_pred CcCcEEECcCCC--cccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCc---Cccc-c-CcccEE
Confidence 478888875543 23344 46677888999998886655544 678888888888 7665532 2222 2 888888
Q ss_pred EeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeeeceEEeecCCCeeEEEEEEEecCC
Q 044491 215 SIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCMVSYMFHELPPFTKVFIDIFYDDG 294 (460)
Q Consensus 215 ~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~~~~ 294 (460)
.+.+|...+...+ -..++|+.|.+.++.-... . .....++|+.|+++++..
T Consensus 112 ~L~~N~l~~~~~l-~~l~~L~~L~Ls~N~i~~~----~-~l~~l~~L~~L~L~~N~i----------------------- 162 (263)
T 1xeu_A 112 FLDNNELRDTDSL-IHLKNLEILSIRNNKLKSI----V-MLGFLSKLEVLDLHGNEI----------------------- 162 (263)
T ss_dssp ECCSSCCSBSGGG-TTCTTCCEEECTTSCCCBC----G-GGGGCTTCCEEECTTSCC-----------------------
T ss_pred EccCCccCCChhh-cCcccccEEECCCCcCCCC----h-HHccCCCCCEEECCCCcC-----------------------
Confidence 8888876544221 1235788888877641111 1 111346677777666532
Q ss_pred ccccccccHHHHhhcCcceeEEEEeccchh
Q 044491 295 WSWVQSGRAQRLLNSLTKAKFLALSADTVY 324 (460)
Q Consensus 295 ~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~ 324 (460)
... ..+..+++|+.|.++++.+.
T Consensus 163 ------~~~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 163 ------TNT-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ------CBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred ------cch-HHhccCCCCCEEeCCCCccc
Confidence 011 33567889999999986543
No 115
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.70 E-value=3.2e-06 Score=87.35 Aligned_cols=106 Identities=11% Similarity=0.192 Sum_probs=62.3
Q ss_pred HhhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhcCCCCCeEEEeecccccccCcccc
Q 044491 306 LLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSSLPNLEEFVFEKKLSCHFEEFGWI 384 (460)
Q Consensus 306 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~~p~L~~L~I~~~~~~~~~~~~w~ 384 (460)
.+..+++|+.|+++.+.+... .+..+..+++|+.|+| .+.-... ....+..+++|+.|++++..-..
T Consensus 489 ~~~~l~~L~~L~Ls~N~L~~l---~~~~f~~l~~L~~L~Ls~N~l~~l--~~~~~~~l~~L~~L~Ls~N~l~~------- 556 (635)
T 4g8a_A 489 IFTELRNLTFLDLSQCQLEQL---SPTAFNSLSSLQVLNMSHNNFFSL--DTFPYKCLNSLQVLDYSLNHIMT------- 556 (635)
T ss_dssp CCTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTSCCCBC--CCGGGTTCTTCCEEECTTSCCCB-------
T ss_pred hhhhccccCEEECCCCccCCc---ChHHHcCCCCCCEEECCCCcCCCC--ChhHHhCCCCCCEEECCCCcCCC-------
Confidence 456677888888877644332 2223556778888888 3321111 12346778888888887741110
Q ss_pred cCCCCCcccccceeEEEEEe--ecCchhHHHHHHHHHhcCc
Q 044491 385 EQPNIPLCLLLHVKKIEIKK--FEGQKDELGLVKYLLKNCK 423 (460)
Q Consensus 385 ~~~~~~~~~~~~L~~v~i~~--~~~~~~~~~~~~~ll~~a~ 423 (460)
-.+....-+..+|+.+.+.+ |.+...-..|+.++-++..
T Consensus 557 ~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~ 597 (635)
T 4g8a_A 557 SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 597 (635)
T ss_dssp CCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTT
T ss_pred CCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCC
Confidence 00111112236799999975 7777777788888766543
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.66 E-value=4.8e-06 Score=74.40 Aligned_cols=62 Identities=21% Similarity=0.158 Sum_probs=26.8
Q ss_pred cccCCcccEEEeceeeeeccCCC-cccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeecc
Q 044491 157 ICTLKTLEVLKLYSDFVIKIPPS-GLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLD 220 (460)
Q Consensus 157 l~~~~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 220 (460)
+..+++|+.|+|+++.....++. +..+++|+.|+| +..+.. .....+..+++|+.|.|.++.
T Consensus 60 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV--LPSAVFDRLVHLKELFMCCNK 123 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred hhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc--cChhHhCcchhhCeEeccCCc
Confidence 33445555555555543333222 234555555555 333321 111233445555555555544
No 117
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.66 E-value=1.1e-05 Score=68.75 Aligned_cols=58 Identities=12% Similarity=-0.016 Sum_probs=29.1
Q ss_pred ccCCcccEEEeceeeeeccCCCcccC-CCCcEEEE-EEEECCCccHHHHhccCCcccceEeeecc
Q 044491 158 CTLKTLEVLKLYSDFVIKIPPSGLCF-RSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLD 220 (460)
Q Consensus 158 ~~~~~L~~L~L~~~~~~~~~~~~~~l-~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 220 (460)
..+++|+.|+|+++..... +....+ ++|+.|+| ++.+.+ + .-+..+++|+.|++.++.
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~---~-~~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK---L-DGFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE---E-CCCCCCSSCCEEECCSSC
T ss_pred CCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCc---c-cccccCCCCCEEECCCCc
Confidence 3566777777777754433 223322 25555555 443321 1 223445555555555543
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.64 E-value=5.8e-06 Score=73.36 Aligned_cols=64 Identities=9% Similarity=0.090 Sum_probs=38.1
Q ss_pred cccCCcccEEEeceeeeeccCC-CcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCC
Q 044491 157 ICTLKTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDK 222 (460)
Q Consensus 157 l~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~ 222 (460)
+..+++|+.|+|+++.....++ .+..+++|++|+| +..+.. .....+..+++|++|.|.++...
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN--VQHKMFKGLESLKTLMLRSNRIT 118 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC--CCGGGGTTCSSCCEEECTTSCCC
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc--cCHhHhcCCcCCCEEECCCCcCC
Confidence 4456677777777775544433 3556777777777 554432 22334566777777777776543
No 119
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.59 E-value=2e-05 Score=77.51 Aligned_cols=49 Identities=31% Similarity=0.401 Sum_probs=42.9
Q ss_pred hhhhhccccCCCccccCCCChHHHHHHhcCCcchheeecccchhhhHhh
Q 044491 4 KFIMNEHESLSKEDRISQLPDGILCHILSFLPIKCALATCILSSRWKFV 52 (460)
Q Consensus 4 ~~~~~~~~~~~~~D~is~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~l 52 (460)
+.++...++....|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus 4 ~~~~~~~~~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 4 KHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp HHHHHHHCCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHhcCccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 3455556666678999999999999999999999999999999999974
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.58 E-value=9.8e-06 Score=72.33 Aligned_cols=90 Identities=19% Similarity=0.163 Sum_probs=59.5
Q ss_pred ceecCCccccCCcccEEEeceeeeeccC-CCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeE
Q 044491 150 LVRLPESICTLKTLEVLKLYSDFVIKIP-PSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINF 227 (460)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~ 227 (460)
...+|..+. ++|+.|+|+++...... ..+..+++|++|+| +..+.. .-...+..+++|+.|+|.++....+..-
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--cChhhcccCCCcCEEECCCCcCCccChh
Confidence 445665443 88999999999766553 34568999999999 766532 2224567899999999999876433211
Q ss_pred EE-eccccceEEEEeec
Q 044491 228 NI-SSTTLKRLCLSFTN 243 (460)
Q Consensus 228 ~i-~~~~L~~L~l~~~~ 243 (460)
.+ ..++|+.|.+.++.
T Consensus 107 ~~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNK 123 (229)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhCcchhhCeEeccCCc
Confidence 11 23466666666553
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.56 E-value=9.8e-06 Score=71.86 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=31.1
Q ss_pred CcccEEEeceeeeeccCC-CcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccC
Q 044491 161 KTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDD 221 (460)
Q Consensus 161 ~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 221 (460)
++|+.|+|+++.....++ .+..+++|++|+| +..+. ......+.++++|+.|+|.++..
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS--ELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC--EECTTTTTTCSSCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC--CcCHHHhhCCcCCCEEECCCCcC
Confidence 456666666664444433 3445666666666 44332 11123345566666666666654
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.54 E-value=2.6e-06 Score=72.69 Aligned_cols=81 Identities=19% Similarity=0.096 Sum_probs=41.9
Q ss_pred CceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceE
Q 044491 137 NVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLS 215 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~ 215 (460)
++++|++..... ..+|......++|+.|+|+++..... +.+..+++|++|+| ++.+.+ .-..++..+|+|+.|+
T Consensus 20 ~L~~L~l~~n~l--~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 20 RDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTELI 94 (176)
T ss_dssp SCEEEECTTSCC--CSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCEEE
T ss_pred CceEEEeeCCCC--chhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccc--cCcchhhcCCCCCEEE
Confidence 455555543321 12332222223677777776654444 45556667777777 544331 1113345667777777
Q ss_pred eeeccCC
Q 044491 216 IGHLDDK 222 (460)
Q Consensus 216 L~~c~~~ 222 (460)
+.++...
T Consensus 95 L~~N~i~ 101 (176)
T 1a9n_A 95 LTNNSLV 101 (176)
T ss_dssp CCSCCCC
T ss_pred CCCCcCC
Confidence 7766543
No 123
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.54 E-value=1.4e-05 Score=79.09 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=39.1
Q ss_pred cCCCccccCCCChHHHHHHhcCCcchheeecccchhhhHhhccc
Q 044491 12 SLSKEDRISQLPDGILCHILSFLPIKCALATCILSSRWKFVWTL 55 (460)
Q Consensus 12 ~~~~~D~is~LPd~iL~~Ils~L~~~d~~~~s~vskrWr~lw~~ 55 (460)
+.-..|.|+.||+||+.+||+||+.+++++++.|||+|+++...
T Consensus 8 ~~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 8 DNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp -CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred cccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 34467999999999999999999999999999999999987554
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.53 E-value=0.00011 Score=69.98 Aligned_cols=113 Identities=17% Similarity=0.139 Sum_probs=64.5
Q ss_pred ceecCCccccCCcccEEEeceeeeeccCCC-cccCCCCcEEEE-EEEECCCccH-HHHhccCCcccceEeee-ccCCCce
Q 044491 150 LVRLPESICTLKTLEVLKLYSDFVIKIPPS-GLCFRSLKVLTV-VLEYPDNNLT-ERLFSICPALEDLSIGH-LDDKSLI 225 (460)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L-~~~~~~~~~l-~~l~~~cp~Le~L~L~~-c~~~~~~ 225 (460)
...+|..+ .++++.|+|+++....+++. +.++++|++|+| ++.+.+ .+ ...+.+++.|.++.+.+ +....+.
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~--~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE--VIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC--EECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC--ccChhHhhcchhhhhhhcccCCcccccC
Confidence 45667655 36899999999977666553 568999999999 664321 11 13456777777655544 3322111
Q ss_pred eEE-EeccccceEEEEeecCccccCCceeEEEecCCceeEEEeee
Q 044491 226 NFN-ISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDF 269 (460)
Q Consensus 226 ~~~-i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 269 (460)
.-. -..++|+.|.+.++.-.... ........++..|.+.+.
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~---~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKHLP---DVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSSCC---CCTTCCBSSCEEEEEESC
T ss_pred chhhhhccccccccccccccccCC---chhhcccchhhhhhhccc
Confidence 001 12367888888877521111 111123455666666554
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.51 E-value=1.2e-05 Score=71.30 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=55.9
Q ss_pred cCceEEEEEeccCcceecCC-ccccCCcccEEEeceeeeecc-CCCcccCCCCcEEEE-EEEECCCccHHHHhccCCccc
Q 044491 136 RNVCEIELFLGSHKLVRLPE-SICTLKTLEVLKLYSDFVIKI-PPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALE 212 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 212 (460)
.++++|++.... ...++. .+..+++|+.|+|+++..... +..+..+++|++|+| +..+.. .-..++.++++|+
T Consensus 32 ~~l~~L~l~~n~--i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQNT--IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLFSLQ 107 (220)
T ss_dssp TTCCEEECCSSC--CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC--CCTTTTTTCTTCC
T ss_pred cCCCEEECCCCc--CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc--cCHhHccCCCCCC
Confidence 367777775543 233443 455678889999988865554 345667888888888 665542 2234567788888
Q ss_pred ceEeeeccCCC
Q 044491 213 DLSIGHLDDKS 223 (460)
Q Consensus 213 ~L~L~~c~~~~ 223 (460)
.|.|.++...+
T Consensus 108 ~L~L~~N~l~~ 118 (220)
T 2v9t_B 108 LLLLNANKINC 118 (220)
T ss_dssp EEECCSSCCCC
T ss_pred EEECCCCCCCE
Confidence 88888886543
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.47 E-value=7.1e-05 Score=75.97 Aligned_cols=112 Identities=19% Similarity=0.163 Sum_probs=79.3
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
.+++.|++..... ..+| ..+++|+.|+|++|.....|. .. .+|++|+| ++.+.+ +.. .+++|+.|
T Consensus 80 ~~L~~L~Ls~N~l--~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~--~~L~~L~Ls~N~l~~---lp~---~l~~L~~L 145 (571)
T 3cvr_A 80 PQITVLEITQNAL--ISLP---ELPASLEYLDACDNRLSTLPE-LP--ASLKHLDVDNNQLTM---LPE---LPALLEYI 145 (571)
T ss_dssp TTCSEEECCSSCC--SCCC---CCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSC---CCC---CCTTCCEE
T ss_pred CCCCEEECcCCCC--cccc---cccCCCCEEEccCCCCCCcch-hh--cCCCEEECCCCcCCC---CCC---cCccccEE
Confidence 4799999966543 2566 346899999999996655533 22 29999999 766543 222 68999999
Q ss_pred EeeeccCCCceeEEEeccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeee
Q 044491 215 SIGHLDDKSLINFNISSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCM 271 (460)
Q Consensus 215 ~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 271 (460)
++.+|...++.. ..++|+.|.+.++.-. + +.. +. ++|+.|+++++..
T Consensus 146 ~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~---~-lp~--l~-~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 146 NADNNQLTMLPE---LPTSLEVLSVRNNQLT---F-LPE--LP-ESLEALDVSTNLL 192 (571)
T ss_dssp ECCSSCCSCCCC---CCTTCCEEECCSSCCS---C-CCC--CC-TTCCEEECCSSCC
T ss_pred eCCCCccCcCCC---cCCCcCEEECCCCCCC---C-cch--hh-CCCCEEECcCCCC
Confidence 999998765444 4578999999988622 1 122 22 8999999988743
No 127
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.47 E-value=1.4e-05 Score=70.12 Aligned_cols=60 Identities=20% Similarity=0.244 Sum_probs=27.6
Q ss_pred cCCcccEEEeceeeeeccCCC-cccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeecc
Q 044491 159 TLKTLEVLKLYSDFVIKIPPS-GLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLD 220 (460)
Q Consensus 159 ~~~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 220 (460)
.+++|++|+|+++.....++. +..+++|++|+| ++.+.+ .....+..+++|+.|++.++.
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS--LPNGVFDKLTQLKELALNTNQ 111 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc--cCHhHhcCccCCCEEEcCCCc
Confidence 445555555555543333222 234555555555 443321 111233445555555555554
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.47 E-value=1.8e-05 Score=68.82 Aligned_cols=38 Identities=18% Similarity=0.034 Sum_probs=24.5
Q ss_pred cccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccC
Q 044491 180 GLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDD 221 (460)
Q Consensus 180 ~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 221 (460)
+..+++|++|+| ++.+.+ +. .+..+++|+.|++.+|..
T Consensus 44 ~~~l~~L~~L~ls~n~l~~---l~-~~~~l~~L~~L~l~~n~l 82 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK---IS-SLSGMENLRILSLGRNLI 82 (198)
T ss_dssp HHHTTTCSEEECSEEEESC---CC-CHHHHTTCCEEEEEEEEE
T ss_pred HhcCCCCCEEECCCCCCcc---cc-ccccCCCCCEEECCCCCc
Confidence 446777777777 776653 22 445567777777777653
No 129
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.38 E-value=2.4e-05 Score=68.51 Aligned_cols=89 Identities=22% Similarity=0.183 Sum_probs=57.2
Q ss_pred ceecCCccccCCcccEEEeceeeeeccCCC-cccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeE
Q 044491 150 LVRLPESICTLKTLEVLKLYSDFVIKIPPS-GLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINF 227 (460)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~ 227 (460)
...+|..+ .++|++|+|+++.....++. +..+++|++|+| +..+.+ .....+..+++|++|++.++...+...-
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS--LPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc--cChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 34455443 35899999999966555443 458999999999 765542 2234567889999999999875432211
Q ss_pred EE-eccccceEEEEee
Q 044491 228 NI-SSTTLKRLCLSFT 242 (460)
Q Consensus 228 ~i-~~~~L~~L~l~~~ 242 (460)
.+ ..++|+.|.+.++
T Consensus 95 ~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 95 VFDKLTQLKELALNTN 110 (208)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred HhcCccCCCEEEcCCC
Confidence 11 1245666665555
No 130
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.38 E-value=0.00028 Score=59.41 Aligned_cols=59 Identities=10% Similarity=0.053 Sum_probs=29.7
Q ss_pred ceeEEEEeccchhhhhhhccccCCCCCceeEEEE-EEeccCcccHHHHHhc---CCCCCeEEEeec
Q 044491 312 KAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-KVELFGWRLLPIILSS---LPNLEEFVFEKK 373 (460)
Q Consensus 312 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~l~~~l~~---~p~L~~L~I~~~ 373 (460)
+|++|+++...+...+. ..+..+++|++|+| .|..+++.++..+-.. |++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL---~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF---DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CEEEEEEESCCCCGGGG---GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHH---HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 45555555543222111 11334555666666 5555555555555542 455666666665
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.35 E-value=3.3e-05 Score=74.00 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=38.1
Q ss_pred eecCCccccCCcccEEEeceeeeeccCCCcc--cCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccC
Q 044491 151 VRLPESICTLKTLEVLKLYSDFVIKIPPSGL--CFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDD 221 (460)
Q Consensus 151 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~--~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 221 (460)
..+|..+. +.++.|+|+++.....++... .+++|++|+| +..+.. .....+..+++|+.|+|.++..
T Consensus 31 ~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~--i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 31 PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF--ISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCC
T ss_pred CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc--cChhhccCCCCCCEEECCCCcC
Confidence 33454332 357777777775555444332 6777777777 544431 1123455677777777777653
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.29 E-value=2.5e-05 Score=79.45 Aligned_cols=80 Identities=20% Similarity=0.210 Sum_probs=44.8
Q ss_pred CceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceE
Q 044491 137 NVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLS 215 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~ 215 (460)
.++.|++.... ...+|. +..+++|+.|+|++|.....|..+..+++|+.|+| +..+.+ +. -+..+++|+.|+
T Consensus 442 ~L~~L~Ls~n~--l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~---lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHKD--LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN---VD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTSC--CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC---CG-GGTTCSSCCEEE
T ss_pred CceEEEecCCC--CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC---Cc-ccCCCCCCcEEE
Confidence 45555554332 223454 55666677777766655455445556666666666 554432 22 355566666666
Q ss_pred eeeccCCC
Q 044491 216 IGHLDDKS 223 (460)
Q Consensus 216 L~~c~~~~ 223 (460)
|.++...+
T Consensus 515 Ls~N~l~~ 522 (567)
T 1dce_A 515 LCNNRLQQ 522 (567)
T ss_dssp CCSSCCCS
T ss_pred CCCCCCCC
Confidence 66665433
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.28 E-value=4.6e-05 Score=73.02 Aligned_cols=132 Identities=22% Similarity=0.152 Sum_probs=75.5
Q ss_pred cCceEEEEEeccCcceecCCccc--cCCcccEEEeceeeeeccCC-CcccCCCCcEEEE-EEEECCCccHHHHhccCCcc
Q 044491 136 RNVCEIELFLGSHKLVRLPESIC--TLKTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPAL 211 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~--~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~L 211 (460)
..++.|++.... ...++...+ .+++|+.|+|+++.....++ .+..+++|++|+| +..+. ......+..+++|
T Consensus 39 ~~l~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHNN--LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH--TLDEFLFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSSC--CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTC
T ss_pred CCCCEEECCCCC--CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC--cCCHHHhCCCcCC
Confidence 356777775543 344444433 67889999998886655543 3567888899988 65543 2223456778889
Q ss_pred cceEeeeccCCCceeEEE-eccccceEEEEeecCccccCCceeEEEecCCceeEEEeeeee
Q 044491 212 EDLSIGHLDDKSLINFNI-SSTTLKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDFCM 271 (460)
Q Consensus 212 e~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 271 (460)
+.|.|.++....+..-.+ ..++|+.|.+.++.-.........-....++|+.|+++++..
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 999888886432111001 125677777776642111100000013467777777776543
No 134
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.25 E-value=4.5e-05 Score=74.86 Aligned_cols=40 Identities=33% Similarity=0.473 Sum_probs=36.7
Q ss_pred CCCccccCCCChH----HHHHHhcCCcchheeecccchhhhHhh
Q 044491 13 LSKEDRISQLPDG----ILCHILSFLPIKCALATCILSSRWKFV 52 (460)
Q Consensus 13 ~~~~D~is~LPd~----iL~~Ils~L~~~d~~~~s~vskrWr~l 52 (460)
.-..|.|+.||+| |+.+||+||+.+++++++.|||+|+.+
T Consensus 5 ~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 5 MLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp CSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred hhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3457999999999 999999999999999999999999953
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.22 E-value=3.2e-05 Score=66.89 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=45.7
Q ss_pred ceecCCccccCCcccEEEeceeeeeccCCC--cccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCC
Q 044491 150 LVRLPESICTLKTLEVLKLYSDFVIKIPPS--GLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDK 222 (460)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~--~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~ 222 (460)
...+|..+.. +|+.|+|+++.....++. +..+++|++|+| +..+.+ .....+..++.|+.|+|.++...
T Consensus 20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~ 91 (192)
T 1w8a_A 20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG--IEPNAFEGASHIQELQLGENKIK 91 (192)
T ss_dssp CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSCCCC
T ss_pred cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC--cCHhHcCCcccCCEEECCCCcCC
Confidence 3455654433 788888888866555443 567888888888 665542 22345667788888888887643
No 136
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.21 E-value=3.7e-05 Score=68.08 Aligned_cols=89 Identities=16% Similarity=0.158 Sum_probs=55.2
Q ss_pred ceecCCccccCCcccEEEeceeeeeccCC--CcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCcee
Q 044491 150 LVRLPESICTLKTLEVLKLYSDFVIKIPP--SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLIN 226 (460)
Q Consensus 150 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~ 226 (460)
...+|..+ .+.++.|+|+++.....++ .+..+++|++|+| ...+.. .....+..+++|+.|.|.++...+...
T Consensus 23 l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~--i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 98 (220)
T 2v70_A 23 LNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--IEEGAFEGASGVNEILLTSNRLENVQH 98 (220)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCCCCG
T ss_pred cccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE--ECHHHhCCCCCCCEEECCCCccCccCH
Confidence 34466544 3457899999996655533 2568999999999 665431 122356778999999999987643321
Q ss_pred EEE-eccccceEEEEee
Q 044491 227 FNI-SSTTLKRLCLSFT 242 (460)
Q Consensus 227 ~~i-~~~~L~~L~l~~~ 242 (460)
-.+ ..++|+.|.+.++
T Consensus 99 ~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 99 KMFKGLESLKTLMLRSN 115 (220)
T ss_dssp GGGTTCSSCCEEECTTS
T ss_pred hHhcCCcCCCEEECCCC
Confidence 111 1245555555544
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.13 E-value=5.3e-06 Score=79.84 Aligned_cols=71 Identities=15% Similarity=0.018 Sum_probs=40.1
Q ss_pred HHHHhhcCcceeEEEEeccchhhhhh-hccccCCCCCceeEEEEEEeccCcc---cHHHHHhcCCCCCeEEEeec
Q 044491 303 AQRLLNSLTKAKFLALSADTVYALDK-IYKDVFPKFPNVTCLAVKVELFGWR---LLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 303 ~~~~l~~l~~l~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~---~l~~~l~~~p~L~~L~I~~~ 373 (460)
+...+...++|++|+++.+.+...+. .....+...++|+.|+|.....+.. .+...+..+|+|++|++.++
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 33444566667777776654432221 1111133445677777722233333 36666778899999999886
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.12 E-value=7.3e-05 Score=76.03 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=16.7
Q ss_pred CCcEEEE-EEEECCCccHHHHhccCCcccceEeeecc
Q 044491 185 SLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLD 220 (460)
Q Consensus 185 ~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 220 (460)
.|+.|+| ++.+.+ +.. +..+++|+.|+|.+|.
T Consensus 442 ~L~~L~Ls~n~l~~---lp~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 442 DVRVLHLAHKDLTV---LCH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp TCSEEECTTSCCSS---CCC-GGGGTTCCEEECCSSC
T ss_pred CceEEEecCCCCCC---CcC-ccccccCcEeecCccc
Confidence 4566666 444332 222 4555666666666654
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.06 E-value=5.4e-05 Score=65.52 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=28.8
Q ss_pred CcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccC
Q 044491 161 KTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDD 221 (460)
Q Consensus 161 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 221 (460)
++|+.|+|+++.....+..+..+++|++|+| +..+.. .....+.+++.|+.|+|.++..
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST--LSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE--eCHhHccCCCCCCEEECCCCcc
Confidence 3555666655544444333445555566655 443321 1112344555566666655543
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.97 E-value=0.00011 Score=62.49 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=31.5
Q ss_pred CcccEEEeceeeeeccCCC-cccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccC
Q 044491 161 KTLEVLKLYSDFVIKIPPS-GLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDD 221 (460)
Q Consensus 161 ~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 221 (460)
++|+.|+|+++.....++. +..+++|++|+| +..+.. .....+..+++|+.|++.++..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE--eChhHccCCCccCEEECCCCCc
Confidence 4666666666644443332 245666666666 444331 1123345566666666666654
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.82 E-value=0.00022 Score=61.64 Aligned_cols=83 Identities=20% Similarity=0.191 Sum_probs=60.1
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCC-CcccCCCCcEEEE-EEEECCCccHHHHhccCCcccc
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALED 213 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~ 213 (460)
.++++|++.... ...+|..+..+++|+.|+|+++.....++ .+..+++|++|+| +..+.. .....+..+++|+.
T Consensus 31 ~~l~~L~L~~n~--i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~--i~~~~f~~l~~L~~ 106 (193)
T 2wfh_A 31 RDVTELYLDGNQ--FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC--IPPRTFDGLKSLRL 106 (193)
T ss_dssp TTCCEEECCSSC--CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCc--CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE--eCHHHhCCCCCCCE
Confidence 368888886554 33667677788999999999996665543 3568899999999 665542 12234677899999
Q ss_pred eEeeeccCC
Q 044491 214 LSIGHLDDK 222 (460)
Q Consensus 214 L~L~~c~~~ 222 (460)
|.|.++...
T Consensus 107 L~L~~N~l~ 115 (193)
T 2wfh_A 107 LSLHGNDIS 115 (193)
T ss_dssp EECCSSCCC
T ss_pred EECCCCCCC
Confidence 999988653
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.75 E-value=0.00032 Score=59.51 Aligned_cols=83 Identities=20% Similarity=0.250 Sum_probs=56.3
Q ss_pred cCceEEEEEeccCcceecCCc-cccCCcccEEEeceeeeeccCCC-cccCCCCcEEEE-EEEECCCccHHHHhccCCccc
Q 044491 136 RNVCEIELFLGSHKLVRLPES-ICTLKTLEVLKLYSDFVIKIPPS-GLCFRSLKVLTV-VLEYPDNNLTERLFSICPALE 212 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 212 (460)
.++++|++.... ...++.. +..+++|++|+|+++.....++. +..+++|++|+| +..+.+ .....+..+++|+
T Consensus 28 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS--LPNGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCC
T ss_pred CCCcEEEeCCCc--ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc--cCHHHhhCCcccC
Confidence 367888875543 2345543 35678899999998866555444 357889999999 665542 2234566788899
Q ss_pred ceEeeeccCC
Q 044491 213 DLSIGHLDDK 222 (460)
Q Consensus 213 ~L~L~~c~~~ 222 (460)
.|++.++...
T Consensus 104 ~L~l~~N~l~ 113 (177)
T 2o6r_A 104 ELALDTNQLK 113 (177)
T ss_dssp EEECCSSCCS
T ss_pred EEECcCCcce
Confidence 9999888654
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.58 E-value=0.00032 Score=60.47 Aligned_cols=82 Identities=16% Similarity=0.108 Sum_probs=55.4
Q ss_pred CceEEEEEeccCcceecCC--ccccCCcccEEEeceeeeeccC-CCcccCCCCcEEEE-EEEECCCccHHHHhccCCccc
Q 044491 137 NVCEIELFLGSHKLVRLPE--SICTLKTLEVLKLYSDFVIKIP-PSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALE 212 (460)
Q Consensus 137 ~l~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 212 (460)
++++|++.... ...++. .+...++|++|+|+++...... ..+..+++|++|+| +..+.+ .....+...++|+
T Consensus 30 ~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 30 HTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE--ISNKMFLGLHQLK 105 (192)
T ss_dssp TCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE--ECSSSSTTCTTCC
T ss_pred CCCEEECCCCc--CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCc--cCHHHhcCCCCCC
Confidence 67777775543 333443 2557789999999988665553 35568899999999 665542 2223456788899
Q ss_pred ceEeeeccCC
Q 044491 213 DLSIGHLDDK 222 (460)
Q Consensus 213 ~L~L~~c~~~ 222 (460)
.|+|.++...
T Consensus 106 ~L~L~~N~l~ 115 (192)
T 1w8a_A 106 TLNLYDNQIS 115 (192)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCcCC
Confidence 9999888643
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.53 E-value=0.0028 Score=59.55 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=32.6
Q ss_pred HhhcCcceeEEEEeccchhhhhhhccccCCCCCcee-EEEE-EEeccCcccH-HHHHhcCCCCCeEEEee
Q 044491 306 LLNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVT-CLAV-KVELFGWRLL-PIILSSLPNLEEFVFEK 372 (460)
Q Consensus 306 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~-~L~L-~~~~~~~~~l-~~~l~~~p~L~~L~I~~ 372 (460)
.+.+|++|+.+.+..+ + ..+....+..+.+|+ .+.+ . . ...+ ...+.+|++|+++.+..
T Consensus 245 aF~~~~~L~~l~l~~n-i---~~I~~~aF~~~~~L~~~l~l~~--~--l~~I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN-L---KTIGQRVFSNCGRLAGTLELPA--S--VTAIEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp TTTTCTTCCEEECCTT-C---CEECTTTTTTCTTCCEEEEECT--T--CCEECTTTTTTCTTEEEEEECS
T ss_pred hhhCCCCCCEEECCcc-c---ceehHHHhhCChhccEEEEEcc--c--ceEEchhhhhCCccCCEEEeCC
Confidence 3556777777777653 1 112222355566677 7777 2 1 1111 23466778888887754
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.49 E-value=0.00013 Score=76.66 Aligned_cols=108 Identities=16% Similarity=-0.014 Sum_probs=52.5
Q ss_pred CccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEEeccc
Q 044491 155 ESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNISSTT 233 (460)
Q Consensus 155 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~ 233 (460)
..+..+++|+.|+|+++....++.....+++|++|+| ++.+. .+..-+..+++|+.|+|.+|....+...-...++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT---ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS---CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc---ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 3344556666666666655444444556666666666 54443 1223345566666666666654322110011245
Q ss_pred cceEEEEeecCccccCCceeEEEecCCceeEEEeee
Q 044491 234 LKRLCLSFTNGVAYSNNWHKVMIATPNLELLNIHDF 269 (460)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 269 (460)
|+.|.+.++.. ..+.......++|+.|+++++
T Consensus 295 L~~L~L~~N~l----~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 295 LKYFYFFDNMV----TTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CSEEECCSSCC----CCCCSSTTSCTTCCCEECTTS
T ss_pred CCEEECCCCCC----CccChhhhcCCCccEEeCCCC
Confidence 66666655531 111111123456666666654
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.34 E-value=0.00019 Score=75.25 Aligned_cols=103 Identities=14% Similarity=0.022 Sum_probs=61.6
Q ss_pred cCceEEEEEeccCcceecCCccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccce
Q 044491 136 RNVCEIELFLGSHKLVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDL 214 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L 214 (460)
..++.|+|.... ...+|..++.+++|++|+|++|.+..+|..+..+++|+.|+| ++.+. .+..-+..+++|+.|
T Consensus 224 ~~L~~L~Ls~n~--l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 224 QLWHALDLSNLQ--IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT---SLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCEEECTTSC--CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS---SCCSSGGGGTTCSEE
T ss_pred CCCcEEECCCCC--CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC---ccChhhcCCCCCCEE
Confidence 356666664433 335666677777777777777755555455667777777777 55543 122335567777777
Q ss_pred EeeeccCCCceeEEEeccccceEEEEeec
Q 044491 215 SIGHLDDKSLINFNISSTTLKRLCLSFTN 243 (460)
Q Consensus 215 ~L~~c~~~~~~~~~i~~~~L~~L~l~~~~ 243 (460)
.|.+|....+..---..++|+.|.+.++.
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 77777553322111122567777776664
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.20 E-value=0.0024 Score=53.90 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=25.2
Q ss_pred CcccEEEeceeeeeccCC-CcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccC
Q 044491 161 KTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDD 221 (460)
Q Consensus 161 ~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 221 (460)
++|+.|+|+++.....++ .+..+++|++|+| +..+.. .-...+..+++|+.|+|.++..
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--IPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--cChhHhCCcchhhEEECCCCcc
Confidence 445555555554333322 2334555555555 333321 1112234445555555555443
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.19 E-value=0.0023 Score=53.76 Aligned_cols=59 Identities=24% Similarity=0.251 Sum_probs=24.8
Q ss_pred CcccEEEeceeeeeccCC-CcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccC
Q 044491 161 KTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDD 221 (460)
Q Consensus 161 ~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 221 (460)
++|+.|+|+++.....++ .+..+++|++|+| +..+.. .-...+..+++|+.|+|.++..
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV--LPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc--cChhhccCCCCCCEEECCCCcc
Confidence 445555555553333322 2334555555555 333321 1112234445555555555443
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.14 E-value=0.0015 Score=55.27 Aligned_cols=82 Identities=16% Similarity=0.114 Sum_probs=44.4
Q ss_pred cCceEEEEEeccCcceec-CCccccCCcccEEEeceeeeeccCCCc-ccCCCCcEEEE-EEEECCCccHHHHhccCCccc
Q 044491 136 RNVCEIELFLGSHKLVRL-PESICTLKTLEVLKLYSDFVIKIPPSG-LCFRSLKVLTV-VLEYPDNNLTERLFSICPALE 212 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~~~~~-~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 212 (460)
.++++|++.... ...+ |..+..+++|+.|+|+++.....++.. ..+++|++|+| +..+.. .-...+..+++|+
T Consensus 33 ~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQ--ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS--IPRGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCS
T ss_pred CCCcEEEeCCCC--ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce--eCHHHhccccCCC
Confidence 356666664433 2233 334445666777777766555544432 46677777777 544432 1123355566666
Q ss_pred ceEeeeccC
Q 044491 213 DLSIGHLDD 221 (460)
Q Consensus 213 ~L~L~~c~~ 221 (460)
.|.|.++.+
T Consensus 109 ~L~L~~N~~ 117 (174)
T 2r9u_A 109 HIYLYNNPW 117 (174)
T ss_dssp EEECCSSCB
T ss_pred EEEeCCCCc
Confidence 666666653
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.07 E-value=0.0016 Score=54.72 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=41.6
Q ss_pred cCceEEEEEeccCcceec-CCccccCCcccEEEeceeeeeccCCCc-ccCCCCcEEEE-EEEECCCccHHHHhccCCccc
Q 044491 136 RNVCEIELFLGSHKLVRL-PESICTLKTLEVLKLYSDFVIKIPPSG-LCFRSLKVLTV-VLEYPDNNLTERLFSICPALE 212 (460)
Q Consensus 136 ~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~~~~~-~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 212 (460)
.++++|++.... ...+ |..+..+++|+.|+|+++.....++.. ..+++|++|+| +..+.. .-...+..+++|+
T Consensus 30 ~~l~~L~L~~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~ 105 (170)
T 3g39_A 30 TTTQVLYLYDNQ--ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS--IPRGAFDNLKSLT 105 (170)
T ss_dssp TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCC
T ss_pred CCCcEEEcCCCc--CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE--eCHHHhcCCCCCC
Confidence 355666654332 2223 333445566666666666544443332 45666666666 444331 1112345566666
Q ss_pred ceEeeeccC
Q 044491 213 DLSIGHLDD 221 (460)
Q Consensus 213 ~L~L~~c~~ 221 (460)
.|.|.++.+
T Consensus 106 ~L~L~~N~~ 114 (170)
T 3g39_A 106 HIWLLNNPW 114 (170)
T ss_dssp EEECCSSCB
T ss_pred EEEeCCCCC
Confidence 666666543
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.92 E-value=0.0011 Score=64.20 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=32.7
Q ss_pred ccCCcccEEEeceeeeeccCCCcccCCCCcEEEE--EEEECCCccHHHHhccCCcccceEeee
Q 044491 158 CTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV--VLEYPDNNLTERLFSICPALEDLSIGH 218 (460)
Q Consensus 158 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L--~~~~~~~~~l~~l~~~cp~Le~L~L~~ 218 (460)
..|++|+.++|..+.....+..+..+.+|+++.| .+...++ ..+.+|++|+.+.+..
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGS----QAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECT----TTTTTCTTCCCEECCT
T ss_pred hCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehh----hHhhCCCCCCEEecCC
Confidence 3567777777765544444444445667777776 2222221 3456677777777754
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.90 E-value=0.0018 Score=61.27 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=31.1
Q ss_pred cCCccccCCcccEEEece-eeeeccCC-CcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeeccC
Q 044491 153 LPESICTLKTLEVLKLYS-DFVIKIPP-SGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLDD 221 (460)
Q Consensus 153 lp~~l~~~~~L~~L~L~~-~~~~~~~~-~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 221 (460)
+|. +..+++|+.|+|++ +.....++ .+..+++|+.|+| +..+. +.....+..+++|+.|+|.++..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--FVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC--EECTTGGGSCSCCCEEECCSSCC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc--eeCHHHhcCCcCCCEEeCCCCcc
Confidence 444 44455555555553 43333322 2335555555555 43332 11223344555555555555544
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.43 E-value=0.0045 Score=52.82 Aligned_cols=19 Identities=16% Similarity=0.231 Sum_probs=14.5
Q ss_pred HHHHHhcCCCCCeEEEeec
Q 044491 355 LPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 355 l~~~l~~~p~L~~L~I~~~ 373 (460)
+...+..+++|++|++.++
T Consensus 143 l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHhCCCcCEEeccCC
Confidence 6667777888888888765
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.40 E-value=0.0042 Score=60.10 Aligned_cols=60 Identities=12% Similarity=0.181 Sum_probs=33.3
Q ss_pred ccccCCcccEEEeceeeeeccCCCcccCCCCcEEEE--EEEECCCccHHHHhccCCcccceEeeecc
Q 044491 156 SICTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV--VLEYPDNNLTERLFSICPALEDLSIGHLD 220 (460)
Q Consensus 156 ~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L--~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 220 (460)
..|...+|+.+.|... .......+..-.+|+++.| .+...++ ..+.+|++|+.+.+..+.
T Consensus 130 ~aF~~~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~~l~~I~~----~aF~~c~~L~~l~l~~n~ 191 (401)
T 4fdw_A 130 DAFRNSQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPSTLEQLKE----DIFYYCYNLKKADLSKTK 191 (401)
T ss_dssp TTTTTCCCSEEECCTT-CCEECTTTTTTCCCCEEECCTTCCEECS----STTTTCTTCCEEECTTSC
T ss_pred hhcccCCccEEEeCCC-ccEECHHhcCCCCceEEEeCCCccEehH----HHhhCcccCCeeecCCCc
Confidence 3343347888887655 2222222222246788777 2332222 346678888888887653
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=93.47 E-value=0.014 Score=55.75 Aligned_cols=138 Identities=15% Similarity=0.091 Sum_probs=72.3
Q ss_pred cccceEEEEeecCccccC-Cc-eeEEEecCCceeEEEeeeeeceE----EeecCCCeeEEEEEEEecCCccccccccHHH
Q 044491 232 TTLKRLCLSFTNGVAYSN-NW-HKVMIATPNLELLNIHDFCMVSY----MFHELPPFTKVFIDIFYDDGWSWVQSGRAQR 305 (460)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~-~~-~~~~~~~p~L~~L~l~~~~~~~~----~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~~ 305 (460)
++|+.|.+.+|.-..... .+ ..+....++|+.|+++++..... ....+++|+.+++..+..+ -.....+..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~---~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG---PEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC---HHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC---HHHHHHHHH
Confidence 578888888875110000 00 00011236899999988754221 1223456777666322210 000012222
Q ss_pred Hh-hcCcceeEEEEeccchhhhhh-hccccCCCCCceeEEEE-EEeccCc---ccHHHHHhcCCCCCeEEEeec
Q 044491 306 LL-NSLTKAKFLALSADTVYALDK-IYKDVFPKFPNVTCLAV-KVELFGW---RLLPIILSSLPNLEEFVFEKK 373 (460)
Q Consensus 306 ~l-~~l~~l~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~L-~~~~~~~---~~l~~~l~~~p~L~~L~I~~~ 373 (460)
.+ ...++|+.|.++.+.+...+. .....+...++|++|+| .+. .+. ..+...+..+++|++|++++|
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 33 246778888888865533221 11111345677888888 332 333 235666777788888888876
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=93.02 E-value=0.043 Score=51.64 Aligned_cols=80 Identities=15% Similarity=0.062 Sum_probs=49.1
Q ss_pred CceEEEEEe-ccCcceecC-CccccCCcccEEEeceeeeeccCCC-cccCCCCcEEEE-EEEECCCccHHHHhccCCccc
Q 044491 137 NVCEIELFL-GSHKLVRLP-ESICTLKTLEVLKLYSDFVIKIPPS-GLCFRSLKVLTV-VLEYPDNNLTERLFSICPALE 212 (460)
Q Consensus 137 ~l~~L~l~~-~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le 212 (460)
++++|+|.. .. ...+| ..+..+++|+.|+|+++.....++. +..+++|++|+| +..+..- -..++...+ |+
T Consensus 32 ~L~~L~l~~~n~--l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~~~~~~~~-L~ 106 (347)
T 2ifg_A 32 NLTELYIENQQH--LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL--SWKTVQGLS-LQ 106 (347)
T ss_dssp CCSEEECCSCSS--CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC--CSTTTCSCC-CC
T ss_pred CeeEEEccCCCC--CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee--CHHHcccCC-ce
Confidence 577777753 32 33444 3455678888888888866555443 457888888888 6555421 112333344 88
Q ss_pred ceEeeeccC
Q 044491 213 DLSIGHLDD 221 (460)
Q Consensus 213 ~L~L~~c~~ 221 (460)
.|.|.++.+
T Consensus 107 ~l~l~~N~~ 115 (347)
T 2ifg_A 107 ELVLSGNPL 115 (347)
T ss_dssp EEECCSSCC
T ss_pred EEEeeCCCc
Confidence 888877764
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=92.75 E-value=0.094 Score=44.40 Aligned_cols=126 Identities=11% Similarity=0.045 Sum_probs=76.5
Q ss_pred ccHHHHhhcCcceeEEEEecc-chhhhhh-hccccCCCCCceeEEEEEEeccCcc---cHHHHHhcCCCCCeEEEeeccc
Q 044491 301 GRAQRLLNSLTKAKFLALSAD-TVYALDK-IYKDVFPKFPNVTCLAVKVELFGWR---LLPIILSSLPNLEEFVFEKKLS 375 (460)
Q Consensus 301 ~~~~~~l~~l~~l~~L~l~~~-~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~---~l~~~l~~~p~L~~L~I~~~~~ 375 (460)
..+...+...+++++|.++.. .+...+. .....+...++|++|+|.....++. .+...+...++|++|++.++.-
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 346667888899999999886 5533221 1112245577899999922234443 3677788889999999988622
Q ss_pred ccccCcccccCCCCCcc--cccceeEEEE--Eee-cCchhHHHHHHHHHhcCcccceEEEEec
Q 044491 376 CHFEEFGWIEQPNIPLC--LLLHVKKIEI--KKF-EGQKDELGLVKYLLKNCKVLNKVIIRCK 433 (460)
Q Consensus 376 ~~~~~~~w~~~~~~~~~--~~~~L~~v~i--~~~-~~~~~~~~~~~~ll~~a~~Le~l~i~~~ 433 (460)
+. .|. .. ..+. ...+|+++.+ .+- -|......+++ .++..+.|+++.+...
T Consensus 106 ~~-~g~---~~--l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 106 SG-SGI---LA--LVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CH-HHH---HH--HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCS
T ss_pred CH-HHH---HH--HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCC
Confidence 11 100 00 1111 2357999999 433 34444445555 5566688999998653
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=90.01 E-value=0.034 Score=50.22 Aligned_cols=78 Identities=14% Similarity=0.066 Sum_probs=36.2
Q ss_pred CceEEEEEeccCc-ceecCCccccCCcccEEEeceeeeeccCCCcccCC--CCcEEEE-EEEECC----C-ccHHHHhcc
Q 044491 137 NVCEIELFLGSHK-LVRLPESICTLKTLEVLKLYSDFVIKIPPSGLCFR--SLKVLTV-VLEYPD----N-NLTERLFSI 207 (460)
Q Consensus 137 ~l~~L~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~--~L~~L~L-~~~~~~----~-~~l~~l~~~ 207 (460)
.++.|+|...... ...+|..+..+++|+.|+|+++..... .....+. +|++|+| +..+.+ . .....++..
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~ 249 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER 249 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHH
Confidence 5666666333211 113444444566666666666643322 2222233 5666666 444331 0 112244555
Q ss_pred CCcccceE
Q 044491 208 CPALEDLS 215 (460)
Q Consensus 208 cp~Le~L~ 215 (460)
+|+|+.|+
T Consensus 250 ~P~L~~LD 257 (267)
T 3rw6_A 250 FPKLLRLD 257 (267)
T ss_dssp CTTCCEES
T ss_pred CcccCeEC
Confidence 66666554
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=89.77 E-value=0.015 Score=55.93 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=26.5
Q ss_pred hhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-E-EeccCcccHHHHHhcCCCCCeEEEe
Q 044491 307 LNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-K-VELFGWRLLPIILSSLPNLEEFVFE 371 (460)
Q Consensus 307 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~-~~~~~~~~l~~~l~~~p~L~~L~I~ 371 (460)
+..+++|+.+.+... ...+....+..+.+|+.+.| . ....+ ...+.+|.+|+++.|.
T Consensus 293 F~~~~~L~~i~l~~~----i~~I~~~aF~~c~~L~~i~lp~~v~~I~----~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS----VKFIGEEAFESCTSLVSIDLPYLVEEIG----KRSFRGCTSLSNINFP 351 (394)
T ss_dssp TTTCTTCCEEEECTT----CCEECTTTTTTCTTCCEECCCTTCCEEC----TTTTTTCTTCCEECCC
T ss_pred ccccccccccccccc----cceechhhhcCCCCCCEEEeCCcccEEh----HHhccCCCCCCEEEEC
Confidence 445666666666432 11111122445566666666 1 11111 1234566777776653
No 160
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=87.75 E-value=0.19 Score=46.85 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=13.9
Q ss_pred CCcccEEEeceeeeeccCC-CcccCCCCcEEEE
Q 044491 160 LKTLEVLKLYSDFVIKIPP-SGLCFRSLKVLTV 191 (460)
Q Consensus 160 ~~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L 191 (460)
|++|+.|+|..+.....+. .+.+|++|++|.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 4455555555442222221 2334555555555
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=85.86 E-value=0.17 Score=45.54 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=29.2
Q ss_pred CCcccEEEeceeeeeccC---CCcccCCCCcEEEE-EEEECCCccHHHHhccCCcccceEeeecc
Q 044491 160 LKTLEVLKLYSDFVIKIP---PSGLCFRSLKVLTV-VLEYPDNNLTERLFSICPALEDLSIGHLD 220 (460)
Q Consensus 160 ~~~L~~L~L~~~~~~~~~---~~~~~l~~L~~L~L-~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 220 (460)
+++|+.|+|+++....+. .....+++|+.|+| +..+.+...+..+ ... .|++|.|.++.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNS 231 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTST
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCc
Confidence 456667777666443321 11235666666666 5555433233222 122 56666666554
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=79.48 E-value=3.8 Score=38.87 Aligned_cols=57 Identities=9% Similarity=0.169 Sum_probs=28.0
Q ss_pred hhcCcceeEEEEeccchhhhhhhccccCCCCCceeEEEE-E-EeccCcccHHHHHhcCCCCCeEEEe
Q 044491 307 LNSLTKAKFLALSADTVYALDKIYKDVFPKFPNVTCLAV-K-VELFGWRLLPIILSSLPNLEEFVFE 371 (460)
Q Consensus 307 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L-~-~~~~~~~~l~~~l~~~p~L~~L~I~ 371 (460)
+..+++|+.+.+... + ..+....+..+.+|+.+.| . ..... ...+.+|.+|+++.|-
T Consensus 284 F~~c~~L~~i~l~~~-i---~~I~~~aF~~c~~L~~i~lp~~v~~I~----~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 284 FMNCPALQDIEFSSR-I---TELPESVFAGCISLKSIDIPEGITQIL----DDAFAGCEQLERIAIP 342 (394)
T ss_dssp TTTCTTCCEEECCTT-C---CEECTTTTTTCTTCCEEECCTTCCEEC----TTTTTTCTTCCEEEEC
T ss_pred cccccccccccCCCc-c---cccCceeecCCCCcCEEEeCCcccEeh----HhHhhCCCCCCEEEEC
Confidence 445666666666431 1 1111122445666777766 1 11111 1235667777777773
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=68.86 E-value=4.5 Score=34.30 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=78.5
Q ss_pred ccHHHHhhcCcceeEEEEecc-chhhhh--hhccccCCCCCceeEEEE-EE--eccCcccHHHHHhcCCCCCeEEEeecc
Q 044491 301 GRAQRLLNSLTKAKFLALSAD-TVYALD--KIYKDVFPKFPNVTCLAV-KV--ELFGWRLLPIILSSLPNLEEFVFEKKL 374 (460)
Q Consensus 301 ~~~~~~l~~l~~l~~L~l~~~-~~~~~~--~~~~~~~~~~~~L~~L~L-~~--~~~~~~~l~~~l~~~p~L~~L~I~~~~ 374 (460)
..+..++..-+.|++|.++.. .+...+ .+. ..+..-..|+.|+| .+ .......+...|+.-+.|++|+|....
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la-~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHH-HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 346667777888999999863 332211 111 12345567999999 33 233445688999999999999998852
Q ss_pred cccccCcccccCCCCCcc--cccceeEEEEEe----ecCchhHHHHHHHHHhcCcccceEEEEecc
Q 044491 375 SCHFEEFGWIEQPNIPLC--LLLHVKKIEIKK----FEGQKDELGLVKYLLKNCKVLNKVIIRCKE 434 (460)
Q Consensus 375 ~~~~~~~~w~~~~~~~~~--~~~~L~~v~i~~----~~~~~~~~~~~~~ll~~a~~Le~l~i~~~~ 434 (460)
-+. .|. .. ..+. ....|+.+.+.+ ..|...+..+++.+-.| +.|.++.+....
T Consensus 110 Ig~-~Ga---~a--la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~~ 168 (197)
T 1pgv_A 110 LTP-ELL---AR--LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFAS 168 (197)
T ss_dssp CCH-HHH---HH--HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCC
T ss_pred CCH-HHH---HH--HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCCC
Confidence 111 110 00 1111 124689998864 34777778888876555 678888886543
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=47.72 E-value=12 Score=35.19 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=44.6
Q ss_pred ccCCcccEEEeceeeeeccC-CCcccCCCCcEEEE--EEEECCCccHHHHhccCCcccceEeeeccCCCceeEE-Eeccc
Q 044491 158 CTLKTLEVLKLYSDFVIKIP-PSGLCFRSLKVLTV--VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFN-ISSTT 233 (460)
Q Consensus 158 ~~~~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~L--~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~-i~~~~ 233 (460)
..|++|+.+.+... ....+ ..+.+|.+|+++.| .+...++ ..+.+|.+|+++.|-.. ...++.-. -.+.+
T Consensus 285 ~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~----~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 285 MNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEGITQILD----DAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred ccccccccccCCCc-ccccCceeecCCCCcCEEEeCCcccEehH----hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 46788888888644 11221 34557888888888 3333322 34667888888888542 11111111 12467
Q ss_pred cceEEEEee
Q 044491 234 LKRLCLSFT 242 (460)
Q Consensus 234 L~~L~l~~~ 242 (460)
|+.+.+.+.
T Consensus 359 L~~i~~~~~ 367 (394)
T 4gt6_A 359 LNNIEYSGS 367 (394)
T ss_dssp CCEEEESSC
T ss_pred CCEEEECCc
Confidence 777777554
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=45.98 E-value=9.1 Score=29.80 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=29.3
Q ss_pred CcccEEEeceeeeeccCCC-cccCCCCcEEEE-EEEECCCccHH
Q 044491 161 KTLEVLKLYSDFVIKIPPS-GLCFRSLKVLTV-VLEYPDNNLTE 202 (460)
Q Consensus 161 ~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L-~~~~~~~~~l~ 202 (460)
++|+.|+|+++.+..+++. +..+++|++|+| +..+.-+-.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~ 74 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLV 74 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGH
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccH
Confidence 4689999999976555443 347888888888 77666554443
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=37.30 E-value=13 Score=35.18 Aligned_cols=80 Identities=18% Similarity=0.163 Sum_probs=48.4
Q ss_pred cccCCcccEEEecee-eeeccCCCcccCCCCcEEEE--EEEECCCccHHHHhccCCcccceEeeeccCCCceeEEE-ecc
Q 044491 157 ICTLKTLEVLKLYSD-FVIKIPPSGLCFRSLKVLTV--VLEYPDNNLTERLFSICPALEDLSIGHLDDKSLINFNI-SST 232 (460)
Q Consensus 157 l~~~~~L~~L~L~~~-~~~~~~~~~~~l~~L~~L~L--~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~ 232 (460)
...|.+|+.+.+... ..... ..+.+|.+|+++.| .+...++ ..+.+|.+|+.+.+... ...++.-.. .++
T Consensus 293 F~~~~~L~~i~l~~~i~~I~~-~aF~~c~~L~~i~lp~~v~~I~~----~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDSVKFIGE-EAFESCTSLVSIDLPYLVEEIGK----RSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTTCTTCCEEEECTTCCEECT-TTTTTCTTCCEECCCTTCCEECT----TTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred ccccccccccccccccceech-hhhcCCCCCCEEEeCCcccEEhH----HhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 346889999998655 11221 34567899999998 3433322 34677999999988643 111111011 346
Q ss_pred ccceEEEEee
Q 044491 233 TLKRLCLSFT 242 (460)
Q Consensus 233 ~L~~L~l~~~ 242 (460)
+|+.+.+...
T Consensus 367 ~L~~i~lp~~ 376 (394)
T 4fs7_A 367 NLKKVELPKR 376 (394)
T ss_dssp TCCEEEEEGG
T ss_pred CCCEEEECCC
Confidence 8888887554
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=33.50 E-value=17 Score=33.97 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=32.6
Q ss_pred ccCCcccEEEeceeeeeccCCCcccCCCCcEEEE-E--EEECCCccHHHHhccCCcccceEeee
Q 044491 158 CTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV-V--LEYPDNNLTERLFSICPALEDLSIGH 218 (460)
Q Consensus 158 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L-~--~~~~~~~~l~~l~~~cp~Le~L~L~~ 218 (460)
..|.+|+.+.+......-....+..|++|+++.+ . +...++ ..+.+|.+|+.+.|..
T Consensus 260 ~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~----~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 260 QNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEP----RVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECT----TTTTTCTTCCEEECCT
T ss_pred ceeehhccccccccceeccccccccccccccccccccccceehh----hhhcCCCCCCEEEcCc
Confidence 3567788887755411111134456788888877 3 222222 3456688888877753
No 168
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=26.69 E-value=34 Score=25.24 Aligned_cols=36 Identities=11% Similarity=0.177 Sum_probs=25.8
Q ss_pred ccceEEEEeccCCc----HHH-HHHHHhhccCCCCCceEEe
Q 044491 424 VLNKVIIRCKETAS----KEN-LCQKLDKLQRGSMTCEVEI 459 (460)
Q Consensus 424 ~Le~l~i~~~~~~~----~~~-~~~~l~~~~r~s~~~~~~~ 459 (460)
.|++++|.+...+. .-+ +...+-.+.+.+|+++|.+
T Consensus 18 qlk~l~~~yc~~~~sS~G~R~Fl~~~l~~~k~~NP~v~i~v 58 (102)
T 1s3a_A 18 GLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILI 58 (102)
T ss_dssp CEEEEEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEE
T ss_pred ceeEEEEEEcCCCCCchhHHHHHHHhhHHHHHHCCCceEEE
Confidence 48999999976643 233 3446778888999998875
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=24.15 E-value=32 Score=31.99 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=27.5
Q ss_pred ccCCcccEEEeceeeeeccCCCcccCCCCcEEEE--EEEECCCccHHHHhccCCcccceEee
Q 044491 158 CTLKTLEVLKLYSDFVIKIPPSGLCFRSLKVLTV--VLEYPDNNLTERLFSICPALEDLSIG 217 (460)
Q Consensus 158 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L--~~~~~~~~~l~~l~~~cp~Le~L~L~ 217 (460)
..|.+|+.+.+......-....+.++..|+++.+ .+...++ ..+..|..|+.+.+.
T Consensus 214 ~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~I~~----~aF~~~~~l~~i~l~ 271 (379)
T 4h09_A 214 SYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTSIGS----FLLQNCTALKTLNFY 271 (379)
T ss_dssp TTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCEECT----TTTTTCTTCCEEEEC
T ss_pred ccccccceeeeccceeEEccccccCCccceEEEcCCCccEeCc----cccceeehhcccccc
Confidence 3456676666654311111133445666777666 2222211 234456666666664
Done!