Query 044495
Match_columns 276
No_of_seqs 163 out of 316
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:46:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13668 Ferritin_2: Ferritin- 100.0 4.6E-30 9.9E-35 211.7 10.5 128 46-180 1-137 (137)
2 cd01045 Ferritin_like_AB Uncha 98.5 9.9E-07 2.1E-11 70.2 9.7 117 49-177 1-138 (139)
3 cd00657 Ferritin_like Ferritin 98.5 1.4E-06 3E-11 66.1 10.0 117 50-178 2-130 (130)
4 PF02915 Rubrerythrin: Rubrery 97.6 0.00039 8.5E-09 55.3 7.8 115 49-177 1-136 (137)
5 cd07908 Mn_catalase_like Manga 97.3 0.0022 4.9E-08 54.0 10.1 121 48-178 15-154 (154)
6 PRK13456 DNA protection protei 96.4 0.023 4.9E-07 51.0 9.4 126 47-182 21-166 (186)
7 cd01048 Ferritin_like_AB2 Unch 96.4 0.01 2.2E-07 49.8 6.7 107 48-172 2-129 (135)
8 cd01052 DPSL DPS-like protein, 96.2 0.06 1.3E-06 44.4 9.9 121 48-178 8-148 (148)
9 cd00907 Bacterioferritin Bacte 96.1 0.084 1.8E-06 43.7 10.7 124 47-180 6-139 (153)
10 PRK12775 putative trifunctiona 95.9 0.043 9.4E-07 59.7 10.1 126 43-183 857-1000(1006)
11 cd01044 Ferritin_CCC1_N Ferrit 95.8 0.069 1.5E-06 43.7 8.7 112 50-179 2-124 (125)
12 COG1633 Uncharacterized conser 95.6 0.14 3E-06 45.3 10.2 123 43-180 21-168 (176)
13 cd01051 Mn_catalase Manganese 94.3 0.26 5.6E-06 42.6 8.3 96 85-180 51-154 (156)
14 PF13668 Ferritin_2: Ferritin- 94.2 0.15 3.2E-06 42.0 6.3 56 45-115 81-136 (137)
15 cd07908 Mn_catalase_like Manga 92.9 0.33 7.1E-06 40.8 6.3 56 44-114 99-154 (154)
16 cd01045 Ferritin_like_AB Uncha 92.8 0.36 7.7E-06 38.1 6.1 55 43-112 83-137 (139)
17 PF00210 Ferritin: Ferritin-li 91.6 2.8 6E-05 33.2 10.0 120 48-179 1-137 (142)
18 PRK10635 bacterioferritin; Pro 90.6 3.6 7.8E-05 35.6 10.4 124 47-182 7-142 (158)
19 cd00657 Ferritin_like Ferritin 89.0 1.9 4.2E-05 32.1 6.6 56 43-113 74-129 (130)
20 PF02915 Rubrerythrin: Rubrery 88.6 1 2.2E-05 35.6 5.1 53 46-113 84-136 (137)
21 TIGR02284 conserved hypothetic 87.0 5.6 0.00012 33.5 8.9 118 48-177 2-138 (139)
22 TIGR00754 bfr bacterioferritin 85.0 15 0.00033 30.9 10.7 125 47-180 7-140 (157)
23 cd01041 Rubrerythrin Rubreryth 80.8 25 0.00054 28.8 10.1 121 47-179 2-131 (134)
24 cd01041 Rubrerythrin Rubreryth 80.4 7 0.00015 32.1 6.7 59 45-115 72-131 (134)
25 PRK12775 putative trifunctiona 77.8 5.8 0.00013 43.6 6.9 55 45-114 940-995 (1006)
26 cd01048 Ferritin_like_AB2 Unch 74.4 9.7 0.00021 31.8 6.0 53 42-106 78-130 (135)
27 cd01046 Rubrerythrin_like rubr 73.3 49 0.0011 27.0 10.2 114 49-179 4-120 (123)
28 cd00907 Bacterioferritin Bacte 70.2 27 0.00058 28.7 7.7 59 45-115 80-138 (153)
29 cd01042 DMQH Demethoxyubiquino 69.4 7.3 0.00016 34.3 4.2 93 85-177 27-137 (165)
30 PF09537 DUF2383: Domain of un 64.7 24 0.00052 27.8 6.1 87 48-146 3-107 (111)
31 PF12902 Ferritin-like: Ferrit 63.8 19 0.00041 33.1 5.9 59 51-118 1-59 (227)
32 cd01055 Nonheme_Ferritin nonhe 61.7 92 0.002 25.8 10.0 123 48-179 5-137 (156)
33 PRK10635 bacterioferritin; Pro 61.0 44 0.00094 28.9 7.4 61 43-115 79-139 (158)
34 PF08139 LPAM_1: Prokaryotic m 59.9 9 0.00019 24.0 2.1 16 7-22 9-24 (25)
35 COG2406 Protein distantly rela 57.2 49 0.0011 29.3 7.0 74 18-118 90-163 (172)
36 PRK13456 DNA protection protei 56.5 49 0.0011 29.9 7.1 61 46-119 107-167 (186)
37 COG1633 Uncharacterized conser 55.0 35 0.00077 30.1 6.0 58 43-115 110-167 (176)
38 cd01043 DPS DPS protein, ferri 54.4 95 0.0021 25.3 8.1 90 87-176 30-137 (139)
39 PRK15396 murein lipoprotein; P 54.2 12 0.00027 29.2 2.6 22 1-22 1-22 (78)
40 cd01047 ACSF Aerobic Cyclase S 54.2 23 0.00049 34.5 4.9 52 129-180 67-120 (323)
41 cd01055 Nonheme_Ferritin nonhe 53.8 69 0.0015 26.5 7.3 59 45-115 79-137 (156)
42 PF00210 Ferritin: Ferritin-li 51.2 63 0.0014 25.3 6.4 59 45-115 79-137 (142)
43 PF04305 DUF455: Protein of un 50.2 21 0.00045 33.5 3.9 24 84-107 178-201 (253)
44 PRK13654 magnesium-protoporphy 50.2 16 0.00034 36.0 3.2 53 129-181 87-141 (355)
45 PF11272 DUF3072: Protein of u 48.8 35 0.00076 25.4 4.1 39 168-208 18-56 (57)
46 cd01051 Mn_catalase Manganese 48.0 62 0.0013 27.9 6.3 56 45-115 98-153 (156)
47 cd01046 Rubrerythrin_like rubr 45.9 71 0.0015 26.1 6.0 59 45-115 62-120 (123)
48 PF15144 DUF4576: Domain of un 44.7 1.1E+02 0.0025 24.3 6.6 25 1-25 1-25 (88)
49 CHL00185 ycf59 magnesium-proto 42.3 23 0.0005 34.8 3.0 53 129-181 83-137 (351)
50 cd07910 MiaE MiaE tRNA-modifyi 42.1 1.6E+02 0.0034 26.6 8.0 94 86-182 47-159 (180)
51 TIGR00754 bfr bacterioferritin 41.2 1.5E+02 0.0032 24.8 7.5 59 45-115 81-139 (157)
52 PF13627 LPAM_2: Prokaryotic l 40.3 22 0.00048 22.0 1.7 18 8-25 2-19 (24)
53 PLN02508 magnesium-protoporphy 40.1 27 0.00058 34.4 3.1 52 129-180 83-136 (357)
54 TIGR02029 AcsF magnesium-proto 37.8 27 0.00058 34.2 2.6 61 120-180 60-130 (337)
55 PF13798 PCYCGC: Protein of un 37.4 21 0.00044 31.6 1.7 20 8-27 1-20 (158)
56 COG3417 FlgN Collagen-binding 37.1 53 0.0012 30.1 4.3 17 7-23 6-22 (200)
57 COG4902 Uncharacterized protei 37.0 1.8E+02 0.004 25.9 7.4 86 8-115 12-99 (189)
58 PRK11443 lipoprotein; Provisio 35.5 34 0.00073 28.8 2.6 18 8-25 3-20 (124)
59 cd01044 Ferritin_CCC1_N Ferrit 32.0 67 0.0014 26.0 3.8 53 132-184 5-57 (125)
60 cd01052 DPSL DPS-like protein, 31.1 2.1E+02 0.0045 23.2 6.6 59 43-114 90-148 (148)
61 PF03232 COQ7: Ubiquinone bios 30.8 1.1E+02 0.0024 27.1 5.2 27 86-115 31-57 (172)
62 PF09968 DUF2202: Uncharacteri 30.4 3.9E+02 0.0084 23.7 10.2 132 48-199 2-158 (162)
63 PF01375 Enterotoxin_a: Heat-l 30.0 27 0.00059 33.0 1.3 22 226-257 24-45 (259)
64 PF11553 DUF3231: Protein of u 28.7 3.4E+02 0.0074 23.0 7.8 108 43-165 14-135 (166)
65 PF03405 FA_desaturase_2: Fatt 27.4 2E+02 0.0044 28.2 6.8 124 48-188 152-283 (330)
66 PF11583 AurF: P-aminobenzoate 26.9 1.5E+02 0.0034 27.4 5.7 94 85-182 110-228 (304)
67 PRK09973 putative outer membra 26.7 60 0.0013 25.9 2.5 19 5-23 4-22 (85)
68 PHA02118 hypothetical protein 25.9 99 0.0022 28.4 4.1 21 5-26 6-26 (202)
69 COG4238 Murein lipoprotein [Ce 25.6 62 0.0013 25.5 2.3 48 2-65 2-49 (78)
70 PF11220 DUF3015: Protein of u 25.3 90 0.002 27.1 3.6 48 155-202 84-131 (144)
71 TIGR02747 TraV type IV conjuga 24.6 34 0.00075 29.7 0.9 19 5-23 2-20 (144)
72 PRK10781 rcsF outer membrane l 24.4 1E+02 0.0022 26.5 3.7 19 7-25 2-20 (133)
73 PF12262 Lipase_bact_N: Bacter 23.9 48 0.001 31.4 1.8 22 5-26 3-24 (268)
74 PF14292 SusE: SusE outer memb 23.9 56 0.0012 26.4 2.0 13 14-26 4-16 (122)
75 COG1113 AnsP Gamma-aminobutyra 23.4 24 0.00053 36.0 -0.3 17 241-257 190-206 (462)
76 PRK11372 lysozyme inhibitor; P 22.2 70 0.0015 26.3 2.2 18 7-24 4-21 (109)
77 PF03232 COQ7: Ubiquinone bios 22.1 80 0.0017 28.0 2.7 50 137-189 14-64 (172)
78 PF05917 DUF874: Helicobacter 21.0 60 0.0013 31.8 1.8 17 10-26 107-123 (398)
79 TIGR03659 IsdE heme ABC transp 20.9 92 0.002 28.5 3.0 22 4-25 2-23 (289)
80 COG1592 Rubrerythrin [Energy p 20.7 4E+02 0.0087 23.7 6.8 77 87-181 36-129 (166)
81 PRK10175 lipoprotein; Provisio 20.3 48 0.001 26.0 0.8 17 7-23 2-18 (75)
82 COG2941 CAT5 Ubiquinone biosyn 20.1 6.9E+02 0.015 23.0 10.1 76 86-177 69-149 (204)
No 1
>PF13668 Ferritin_2: Ferritin-like domain
Probab=99.96 E-value=4.6e-30 Score=211.71 Aligned_cols=128 Identities=29% Similarity=0.384 Sum_probs=114.7
Q ss_pred CchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhh-cCCc---CCC
Q 044495 46 DDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCH-KVCA---SSR 121 (276)
Q Consensus 46 ~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aL-g~~P---~~~ 121 (276)
+|++||||||+|||||.+||.+++.|.+++. . +..+++.+++++++|+.||..|+++ |++.+ |+.| +..
T Consensus 1 ~D~~iL~~Al~lE~l~~~fY~~~~~~~~~~~-~---~~~~~~~~~~~~~~i~~~E~~H~~~---l~~~l~g~~~~~~~~~ 73 (137)
T PF13668_consen 1 GDLDILNFALNLEYLEADFYQQAAEGFTLQD-N---KAALDPEVRDLFQEIADQEQGHVDF---LQAALEGGRPVPPPAY 73 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCChhh-h---hccCCHHHHHHHHHHHHHHHHHHHH---HHHHhcCCCCCCCCcc
Confidence 5999999999999999999999998887765 2 4678999999999999999999999 99999 7554 444
Q ss_pred CC---CCchH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495 122 NF---LPSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFG 180 (276)
Q Consensus 122 ~F---~~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~ 180 (276)
+| +..|+ ||.+|+.||++|+++|+|++++++|++++.++++|++||+||+++||++|++
T Consensus 74 ~~~~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~~~~~~~~~~~~i~~~Ea~H~~~ir~ll~~ 137 (137)
T PF13668_consen 74 DFPFDPFTDDASFLRLAYTLEDVGVSAYKGAAPQIEDPELKALAASIAGVEARHAAWIRNLLGQ 137 (137)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55 22233 9999999999999999999999999999999999999999999999999985
No 2
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=98.50 E-value=9.9e-07 Score=70.15 Aligned_cols=117 Identities=17% Similarity=0.121 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc--CCcCC--CCC-
Q 044495 49 DNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK--VCASS--RNF- 123 (276)
Q Consensus 49 diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg--~~P~~--~~F- 123 (276)
++||+|+.+|..-..||.+.+. ..-++.++.+++.++.+|..|.+.+.++...++ +.|.. ..+
T Consensus 1 ~~l~~a~~~E~~~~~~Y~~~a~------------~~~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~ 68 (139)
T cd01045 1 EILALAIKMEEEAAEFYLELAE------------KAKDPELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYK 68 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh------------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHH
Confidence 5899999999999999998751 223568999999999999999999555545554 34510 000
Q ss_pred --------------CCchH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHH
Q 044495 124 --------------LPSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREY 177 (276)
Q Consensus 124 --------------~~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~l 177 (276)
...|+ .|..+.-+|..++.-|.-.+..+.++....+...|...|.+|...+|.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~d~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 69 EEVEEEPEFKKALESLMDPLEALRLAIEIEKDAIEFYEELAEKAEDPEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred HHHhhhhhHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01222 8899999999999999999999999999999999999999999999975
No 3
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.50 E-value=1.4e-06 Score=66.09 Aligned_cols=117 Identities=15% Similarity=0.011 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcC-CC-----C-
Q 044495 50 NLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCAS-SR-----N- 122 (276)
Q Consensus 50 iLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~-~~-----~- 122 (276)
+||-++..|+-...+|..... .. -++.++.++.+++.+|..|.+.+..+-..+|+.|. .. .
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~-----------~~-~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~ 69 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAA-----------RA-PDPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAY 69 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------Hc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhc
Confidence 689999999999999998652 11 26889999999999999999994444444555551 11 1
Q ss_pred ---CCCchH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHh
Q 044495 123 ---FLPSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYL 178 (276)
Q Consensus 123 ---F~~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL 178 (276)
....|+ .+..+...|..+...|........+++.......|...|.+|...++.++
T Consensus 70 ~~~~~~~~~~~~l~~~~~~E~~~~~~y~~~~~~~~d~~~~~~~~~~~~~E~~H~~~~~~~~ 130 (130)
T cd00657 70 ALPKTSDDPAEALRAALEVEARAIAAYRELIEQADDPELRRLLERILADEQRHAAWFRKLL 130 (130)
T ss_pred ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 113344 78888999999999999999888899999999999999999999998753
No 4
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=97.55 E-value=0.00039 Score=55.30 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCC-HHHHHHHHHHHHhhhhhhHhhHHhHHhhcC-----Cc----
Q 044495 49 DNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLD-NLTRAIITEFGYQEVGHLRCGHALLQCHKV-----CA---- 118 (276)
Q Consensus 49 diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~-~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~-----~P---- 118 (276)
++|+.|+..|.-...||...+. .+.-+ |.++.++..++.+|..|..+ +.+.+.. .|
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~-----------~~~~~~p~~~~~f~~lA~~E~~H~~~---~~~l~~~~~~~~~~~~~~ 66 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAE-----------KAKDEGPELKELFRRLAEEEQEHAKF---LEKLLRKLGPGEEPPFLE 66 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHTTHHHHHHHHHHHHHHHHHHHH---HHHHHCHCSTTHHTHCHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-----------HhhhcccHHHHHHHHHHHHHHHHHHH---HHHHHHhhccccCcchhh
Confidence 6899999999999999998641 11112 88999999999999999999 6666551 12
Q ss_pred --CCCCCCC-------chH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHH
Q 044495 119 --SSRNFLP-------SAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREY 177 (276)
Q Consensus 119 --~~~~F~~-------~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~l 177 (276)
....|.. .++ .+..+...|.-++.-|.-.+..+.++......-.|...|.+|...++.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~a~~~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 67 EKVEYSFFPKLEEETDENLEEALEMAIKEEKDAYEFYAELARKAPDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp CCCCHCCCCTCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111221 123 8888899999999999999999999999999999999999999999865
No 5
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=97.33 E-value=0.0022 Score=53.95 Aligned_cols=121 Identities=13% Similarity=0.028 Sum_probs=90.6
Q ss_pred hhHHHHHHH---HHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc-----C
Q 044495 48 VDNLQFAQS---LEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA-----S 119 (276)
Q Consensus 48 ~diLNfALn---LEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P-----~ 119 (276)
...|+=.+. -|+--..+|.+-... ...-++..++++.+++.+|..|.+.+..+...||+.| .
T Consensus 15 ~~~~~~~~~g~~~E~~ai~~Y~y~~~~----------~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~ 84 (154)
T cd07908 15 AELLLDDYAGTNSELTAISQYIYQHLI----------SEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSS 84 (154)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHHHH----------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhc
Confidence 344444444 566666666654211 1123689999999999999999999666666677777 1
Q ss_pred CCCCC---------CchH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHh
Q 044495 120 SRNFL---------PSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYL 178 (276)
Q Consensus 120 ~~~F~---------~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL 178 (276)
...|. ..|+ .|..+..+|.-++.-|..++..+.|++.+...-.|+.=|-+|..++..+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~d~~~r~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 85 SDKFTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAETIKDPYIRALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred cccCCcCCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 11121 2233 88999999999999999999999999999999999999999999987654
No 6
>PRK13456 DNA protection protein DPS; Provisional
Probab=96.44 E-value=0.023 Score=51.01 Aligned_cols=126 Identities=15% Similarity=0.038 Sum_probs=93.2
Q ss_pred chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccC-CHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc-------
Q 044495 47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANL-DNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA------- 118 (276)
Q Consensus 47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l-~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P------- 118 (276)
=++.||=||.-||+=.=.|..... ...++ .+.+...+.+-+.+|..|...|..=-..|||.|
T Consensus 21 li~lLn~AlA~E~~a~~~Y~~~a~----------~~~G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~ 90 (186)
T PRK13456 21 LVELLVKNAAAEFTTYYYYTILRA----------HLIGLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREF 90 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHH
Confidence 468899999999998777776431 01233 467888999999999999999543335588887
Q ss_pred ---CCCCCC--Cc---hH--HHHHHhhcccchhhhhcccccccC--CHHHHHHHHhhhhhhhhhhHHHHHHhhhcc
Q 044495 119 ---SSRNFL--PS---AP--IMTRYYMVPYVGLNGYTGSNPFLC--GYLAKRLAAGLLSPESGQDRIVREYLFGRA 182 (276)
Q Consensus 119 ---~~~~F~--~~---dp--fL~~A~~lE~vGvsAY~Gaap~l~--~~~~l~aAa~IlsVEArHaa~IR~lL~~~~ 182 (276)
++++|. +. |. +|...-.=|..-+..|.=....+. |+.-...+-.||+-|-.|...+..+|..+.
T Consensus 91 ~~ls~~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~kDp~T~~l~~~IL~dE~eH~~dl~~lL~~~~ 166 (186)
T PRK13456 91 HDISACPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTAGKDPRTYDLALAILQEEIEHEAWFSELLGGGP 166 (186)
T ss_pred hhhhcCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 244553 22 33 777777777888888875555443 566788999999999999999999998654
No 7
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=96.43 E-value=0.01 Score=49.77 Aligned_cols=107 Identities=12% Similarity=0.078 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc--CC--c----C
Q 044495 48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK--VC--A----S 119 (276)
Q Consensus 48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg--~~--P----~ 119 (276)
.++|.||+..|++.-+||.....-+ + .+.++..|+..|..|... |+..+. +. | .
T Consensus 2 ~~~L~~Ale~Ek~a~~~Y~~~~~k~-----------~----~~~~F~~la~~E~~H~~~---l~~L~~~~~~~~p~~~~~ 63 (135)
T cd01048 2 IAALLYALEEEKLARDVYLALYEKF-----------G----GLRPFSNIAESEQRHMDA---LKTLLERYGLPDPVDPFS 63 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-----------c----CcchHHHHHHHHHHHHHH---HHHHHHHcCCCCCCCccc
Confidence 5789999999999999999875221 1 467899999999999999 776665 33 3 2
Q ss_pred CCCCC------------CchH-HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhH
Q 044495 120 SRNFL------------PSAP-IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDR 172 (276)
Q Consensus 120 ~~~F~------------~~dp-fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa 172 (276)
...|. ..+. -+..+..+|...+.=|.-++...+|++++..--.+..-|-.|-.
T Consensus 64 ~~~f~~~~~~~l~~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~~~d~d~k~v~~~L~~~e~~H~~ 129 (135)
T cd01048 64 GGVFTNPQYNQLVEQGPKSLQDALEVGVLIEELDIADYDRLLERTQNPDIRDVFENLQAASRNHHL 129 (135)
T ss_pred cccccchhHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 23332 1122 77788889999999999999999999998888888888877743
No 8
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=96.16 E-value=0.06 Score=44.38 Aligned_cols=121 Identities=13% Similarity=0.020 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccC-CHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc-CCC----
Q 044495 48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANL-DNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA-SSR---- 121 (276)
Q Consensus 48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l-~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P-~~~---- 121 (276)
++.||-+|+.|+--...|..-.. . ..+. -..+...+.+++.+|..|+..+.+.-..|||.| .+.
T Consensus 8 ~~~Ln~~la~e~~~~~~y~~~~~---------~-~~g~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~ 77 (148)
T cd01052 8 IELLNKAFADEWLAYYYYTILAK---------H-VKGPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWY 77 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------H-HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHH
Confidence 46799999999998777776321 0 1111 246888999999999999999777777899888 111
Q ss_pred -----CC-----CCchH--HHHHHhhcccchhhhhccccccc--CCHHHHHHHHhhhhhhhhhhHHHHHHh
Q 044495 122 -----NF-----LPSAP--IMTRYYMVPYVGLNGYTGSNPFL--CGYLAKRLAAGLLSPESGQDRIVREYL 178 (276)
Q Consensus 122 -----~F-----~~~dp--fL~~A~~lE~vGvsAY~Gaap~l--~~~~~l~aAa~IlsVEArHaa~IR~lL 178 (276)
.+ ...|. .+.....-|...+..|....... .|.......-.|+.-|-.|..+++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~~D~~t~~ll~~~l~de~~h~~~~~~~~ 148 (148)
T cd01052 78 EISGCKCGYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHGKDPVTYDLALAILNEEIEHEEDLEELL 148 (148)
T ss_pred HHhcccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 11 12232 77788888888889998777655 566677888899999999999999875
No 9
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=96.13 E-value=0.084 Score=43.75 Aligned_cols=124 Identities=10% Similarity=-0.008 Sum_probs=90.8
Q ss_pred chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccC-CHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc--CCCCC
Q 044495 47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANL-DNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA--SSRNF 123 (276)
Q Consensus 47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l-~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P--~~~~F 123 (276)
=++.||-+++.||--...|.+...- ..+. -+.+...+.+++.+|..|..-+.+.-..+||.| +....
T Consensus 6 ~~~~Ln~~l~~E~~a~~~Y~~~a~~----------~~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~ 75 (153)
T cd00907 6 VIEALNKALTGELTAINQYFLHARM----------LEDWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGK 75 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCC
Confidence 3578999999999998888853210 0111 256788999999999999999666666678887 11111
Q ss_pred C--CchH--HHHHHhhcccchhhhhccccc---ccCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495 124 L--PSAP--IMTRYYMVPYVGLNGYTGSNP---FLCGYLAKRLAAGLLSPESGQDRIVREYLFG 180 (276)
Q Consensus 124 ~--~~dp--fL~~A~~lE~vGvsAY~Gaap---~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~ 180 (276)
. ..|+ .+..+.-.|.--+..|.-... -..|+......-.|+..|-.|..++|.++..
T Consensus 76 ~~~~~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~ 139 (153)
T cd00907 76 LRIGEDVPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDL 139 (153)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122 667777777777888887644 3578888899999999999999999988764
No 10
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.93 E-value=0.043 Score=59.73 Aligned_cols=126 Identities=11% Similarity=0.101 Sum_probs=101.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcC-Cc-CC
Q 044495 43 LCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKV-CA-SS 120 (276)
Q Consensus 43 ~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~-~P-~~ 120 (276)
...++.+||.+|+.+|-=--+||.+.+ ...-++.+++++.++|..|..|.+. |++.+.. .| ..
T Consensus 857 ~~~~~~eil~~Ai~mE~~g~~FY~~~A------------~~a~~~~~K~lF~~LA~eE~~H~~~---l~~~~~~~~~~~~ 921 (1006)
T PRK12775 857 EDAAALEAIRTAFEIELGGMAFYARAA------------KETSDPVLKELFLKFAGMEQEHMAT---LARRYHAAAPSPT 921 (1006)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHH------------HHcCCHHHHHHHHHHHHHHHHHHHH---HHHHHhhccCCcc
Confidence 346789999999999999999999975 1234789999999999999999999 6666552 23 11
Q ss_pred CCC--------C-----CchH--HHHHHhhcccchhhhhcccccccCCHH-HHHHHHhhhhhhhhhhHHHHHHhhhccc
Q 044495 121 RNF--------L-----PSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYL-AKRLAAGLLSPESGQDRIVREYLFGRAD 183 (276)
Q Consensus 121 ~~F--------~-----~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~-~l~aAa~IlsVEArHaa~IR~lL~~~~~ 183 (276)
..| . ..++ .|..|.-+|.=.+.=|..++...++++ .+++...|..-|..|-..+..++.+...
T Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~al~lAm~~Ekdai~fY~~la~~~~d~e~~k~l~~~LA~EEk~Hl~~L~~~~d~~~~ 1000 (1006)
T PRK12775 922 EGFKIERAAIMAGVKGRPDDPGNLFRIAIEFERRAVKFFKERVAETPDGSVERQLYKELAAEEREHVALLTTEFERWKQ 1000 (1006)
T ss_pred cccccchhhhhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 1 1223 888999999999999999999999986 6899999999999999999988776553
No 11
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=95.82 E-value=0.069 Score=43.69 Aligned_cols=112 Identities=15% Similarity=0.085 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCCCCCC-----
Q 044495 50 NLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSRNFL----- 124 (276)
Q Consensus 50 iLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~~~F~----- 124 (276)
.+|=.+.-|.-...||.+.+ ...-++..+.++.++|.+|..|..++..+...+|+.|....+.
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la------------~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLA------------KREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPPPRPKLKIFFYK 69 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHHHHHHH
Confidence 46678899999999999864 1234788999999999999999999333333344443211111
Q ss_pred ----CchH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHhh
Q 044495 125 ----PSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLF 179 (276)
Q Consensus 125 ----~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~ 179 (276)
.+++ .+..+.-.|.-+..-|...... ......|..-|-.|-..++.++.
T Consensus 70 ~l~~~~g~~~~l~~~~~~E~~ai~~Y~~~~~~------~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 70 LLARIFGPTFVLKLLERGEERAIEKYDRLLEE------RPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred HHHHHHhHHHHHHHHHHhHHhhHhhHHhhhhh------hHHHHHHHHHHHHHHHHHHHhhh
Confidence 1111 3344445666677777766544 44567799999999999887753
No 12
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.14 Score=45.27 Aligned_cols=123 Identities=15% Similarity=0.011 Sum_probs=93.6
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc---C--C
Q 044495 43 LCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK---V--C 117 (276)
Q Consensus 43 ~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg---~--~ 117 (276)
...+-.++|++|+..|.=.-.||.+.+ +-.-++.++.++.+|+.+|..|.+- +++.+. . +
T Consensus 21 ~~~~~~e~L~~Ai~~E~eA~~fY~~la------------e~~~~~~~rk~~~~la~eE~~H~~~---f~~l~~~~~~~~~ 85 (176)
T COG1633 21 KELSIEELLAIAIRGELEAIKFYEELA------------ERIEDEEIRKLFEDLADEEMRHLRK---FEKLLEKLTPKEV 85 (176)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHH------------HhcCCHhHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCcc
Confidence 345789999999999999999999864 2335679999999999999999999 665544 2 1
Q ss_pred cC--------CCCCC-Cch---------H--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHH
Q 044495 118 AS--------SRNFL-PSA---------P--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREY 177 (276)
Q Consensus 118 P~--------~~~F~-~~d---------p--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~l 177 (276)
+. ...+. ..+ . -+..|.--|--.+--|...+-.+.|.+...+.-.|...|-+|...++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~~~~~~~~~~~~a~~E~~H~~~l~~~ 165 (176)
T COG1633 86 SSEEEEGEIESEILEYLQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLDELVNEEAKKLFKTIADDEKGHASGLLSL 165 (176)
T ss_pred chhhhhcchhhhhccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 00111 111 1 3444555577777889999999999999999999999999999999987
Q ss_pred hhh
Q 044495 178 LFG 180 (276)
Q Consensus 178 L~~ 180 (276)
+..
T Consensus 166 ~~~ 168 (176)
T COG1633 166 YNR 168 (176)
T ss_pred HHH
Confidence 654
No 13
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=94.33 E-value=0.26 Score=42.63 Aligned_cols=96 Identities=14% Similarity=0.039 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcC----CcCCCCCC--CchH--HHHHHhhcccchhhhhcccccccCCHHH
Q 044495 85 LDNLTRAIITEFGYQEVGHLRCGHALLQCHKV----CASSRNFL--PSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLA 156 (276)
Q Consensus 85 l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~----~P~~~~F~--~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~ 156 (276)
-++.+++.+.+|+.+|..|++.+...-..||+ .|-++.+- ..|+ .|......|.-...-|.=....++|+.+
T Consensus 51 ~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g~pw~~~yv~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~Dp~v 130 (156)
T cd01051 51 EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPWTAAYIQSSGNLVADLRSNIAAESRARLTYERLYEMTDDPGV 130 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 46889999999999999999996666666774 44222221 2344 7778888999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhhh
Q 044495 157 KRLAAGLLSPESGQDRIVREYLFG 180 (276)
Q Consensus 157 l~aAa~IlsVEArHaa~IR~lL~~ 180 (276)
+....-|+.=|-.|.-.++.+|.+
T Consensus 131 ~~~l~~I~~rE~~H~~~f~~~l~~ 154 (156)
T cd01051 131 KDTLSFLLVREIVHQNAFGKALES 154 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988753
No 14
>PF13668 Ferritin_2: Ferritin-like domain
Probab=94.23 E-value=0.15 Score=41.96 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=48.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc
Q 044495 45 RDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK 115 (276)
Q Consensus 45 ~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg 115 (276)
.+|.++|++|+.+|..=..+|..++ ...-++..+..+..|+..|..|... ||..|+
T Consensus 81 ~~~~~~L~~A~~~E~~~~~~Y~g~~------------~~~~~~~~~~~~~~i~~~Ea~H~~~---ir~ll~ 136 (137)
T PF13668_consen 81 TDDASFLRLAYTLEDVGVSAYKGAA------------PQIEDPELKALAASIAGVEARHAAW---IRNLLG 136 (137)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH------------HHcCCHHHHHHHHHHHHHHHHHHHH---HHHHhc
Confidence 4799999999999999999998764 1223788999999999999999999 998875
No 15
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=92.86 E-value=0.33 Score=40.82 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=47.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhh
Q 044495 44 CRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCH 114 (276)
Q Consensus 44 ~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aL 114 (276)
..+..++|.+++..|.=--+||.+.+ ....++.+++++.+|..+|..|.+. |++.|
T Consensus 99 ~~~~~~~L~~~~~~E~~ai~~Y~~~~------------~~~~d~~~r~ll~~I~~eE~~H~~~---L~~~l 154 (154)
T cd07908 99 GESIKEMLKLDIASEKAAIAKYKRQA------------ETIKDPYIRALLNRIILDEKLHIKI---LEELL 154 (154)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHH------------HHcCCHHHHHHHHHHHHHHHHHHHH---HHhhC
Confidence 34678899999999999999999875 1235789999999999999999999 76543
No 16
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=92.75 E-value=0.36 Score=38.06 Aligned_cols=55 Identities=24% Similarity=0.284 Sum_probs=47.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHH
Q 044495 43 LCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQ 112 (276)
Q Consensus 43 ~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~ 112 (276)
...++.++|..|+..|---.+||...+. ...++.++.++.+|..+|..|... |+.
T Consensus 83 ~~~~~~~~l~~a~~~E~~~~~~Y~~~~~------------~~~d~~~~~~~~~l~~~E~~H~~~---l~~ 137 (139)
T cd01045 83 SLMDPLEALRLAIEIEKDAIEFYEELAE------------KAEDPEVKKLFEELAEEERGHLRL---LEE 137 (139)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 4467899999999999999999998751 234789999999999999999999 764
No 17
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=91.62 E-value=2.8 Score=33.25 Aligned_cols=120 Identities=10% Similarity=-0.018 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCC-HHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCC------
Q 044495 48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLD-NLTRAIITEFGYQEVGHLRCGHALLQCHKVCASS------ 120 (276)
Q Consensus 48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~-~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~------ 120 (276)
++.||-+++.|+--...|..... ...+.. +.+..++++.+.+|..|..-+.+.-..+||.|..
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~----------~~~~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~ 70 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHW----------NFDGPNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIP 70 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------HHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH----------HhcCCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhh
Confidence 46899999999888888876521 011222 5688899999999999999966666778887711
Q ss_pred -----CCCCCchH--HHHHHhhcccchhhhhccccccc---CCHHHHHHHHhhhhhhhhhhHHHHHHhh
Q 044495 121 -----RNFLPSAP--IMTRYYMVPYVGLNGYTGSNPFL---CGYLAKRLAAGLLSPESGQDRIVREYLF 179 (276)
Q Consensus 121 -----~~F~~~dp--fL~~A~~lE~vGvsAY~Gaap~l---~~~~~l~aAa~IlsVEArHaa~IR~lL~ 179 (276)
..+. |+ .+..+.-.|......|....... .|+......-.++.-|..|.-.++..|.
T Consensus 71 ~~~~~~~~~--~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~ 137 (142)
T PF00210_consen 71 EIPKPPEWT--DPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLDEFLEEEEKHIWMLQAHLT 137 (142)
T ss_dssp HHHSSSSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 33 66666666667777777666655 5666667777777777777777776654
No 18
>PRK10635 bacterioferritin; Provisional
Probab=90.60 E-value=3.6 Score=35.62 Aligned_cols=124 Identities=10% Similarity=0.061 Sum_probs=88.4
Q ss_pred chhHHHHHHHHHHHHHHHHhccc---cCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcC--C-
Q 044495 47 DVDNLQFAQSLEHLEAELFLGGG---LGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCAS--S- 120 (276)
Q Consensus 47 D~diLNfALnLEyLEA~FY~~a~---~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~--~- 120 (276)
=++.||-+|+.|+.-..-|..-+ .+. +++..-. .+..-+.+|..|...+..=--.|||.|. .
T Consensus 7 vi~~LN~~L~~El~Ai~QY~~ha~~~~~~-----------G~~~la~-~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~ 74 (158)
T PRK10635 7 IINYLNKLLGNELVAINQYFLHARMFKNW-----------GLMRLND-VEYHESIDEMKHADKYIERILFLEGIPNLQDL 74 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CcHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 46889999999999888776532 122 2322222 3333388999999882222233778881 1
Q ss_pred CCCC-CchH--HHHHHhhcccchhhhhcccccc---cCCHHHHHHHHhhhhhhhhhhHHHHHHhhhcc
Q 044495 121 RNFL-PSAP--IMTRYYMVPYVGLNGYTGSNPF---LCGYLAKRLAAGLLSPESGQDRIVREYLFGRA 182 (276)
Q Consensus 121 ~~F~-~~dp--fL~~A~~lE~vGvsAY~Gaap~---l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~~ 182 (276)
.... ..|+ .+.....+|.-.+.-|+=+..+ ..|...+.+...|+.-|-.|.-++.+.|....
T Consensus 75 ~~~~~g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~~iL~dEe~H~~~le~~l~~i~ 142 (158)
T PRK10635 75 GKLNIGEDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMIEILADEEGHIDWLETELDLIG 142 (158)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 3455 8999999999999999988776 56788899999999999999999999887543
No 19
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=88.95 E-value=1.9 Score=32.09 Aligned_cols=56 Identities=14% Similarity=0.030 Sum_probs=45.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHh
Q 044495 43 LCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQC 113 (276)
Q Consensus 43 ~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~a 113 (276)
...++.++|.+++..|---..+|..... ..-++.+++++..+..+|..|+.. ++..
T Consensus 74 ~~~~~~~~l~~~~~~E~~~~~~y~~~~~------------~~~d~~~~~~~~~~~~~E~~H~~~---~~~~ 129 (130)
T cd00657 74 TSDDPAEALRAALEVEARAIAAYRELIE------------QADDPELRRLLERILADEQRHAAW---FRKL 129 (130)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHH------------hcCChHHHHHHHHHHHHHHHHHHH---HHhh
Confidence 3467788999999999999999987541 123789999999999999999999 7654
No 20
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=88.59 E-value=1 Score=35.57 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=44.7
Q ss_pred CchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHh
Q 044495 46 DDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQC 113 (276)
Q Consensus 46 ~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~a 113 (276)
+...+|..|+..|.--..||...+ ...-++.+++++..|+.+|..|+.. |++.
T Consensus 84 ~~~~~l~~a~~~E~~~~~~Y~~~a------------~~~~~~~~~~~~~~l~~~E~~H~~~---l~~l 136 (137)
T PF02915_consen 84 NLEEALEMAIKEEKDAYEFYAELA------------RKAPDPEIRKLFEELAKEEKEHEDL---LEKL 136 (137)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHH------------HHTTSHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHCCCHHHHHHHHHHHHHHHHHHHH---HHHh
Confidence 467889999999999999999865 2345799999999999999999999 7653
No 21
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=87.00 E-value=5.6 Score=33.55 Aligned_cols=118 Identities=7% Similarity=-0.017 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc-CCCCCC--
Q 044495 48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA-SSRNFL-- 124 (276)
Q Consensus 48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P-~~~~F~-- 124 (276)
++.||=-+...|=--++|..++ + .--++..+.++++++.+=..|+.-|++.-..+|+.| ..++|.
T Consensus 2 i~~Ln~Lie~~~D~~~gY~~aa-----e-------~v~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~ 69 (139)
T TIGR02284 2 IHSLNDLIEISIDGKDGFEESA-----E-------EVKDPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGS 69 (139)
T ss_pred hHHHHHHHHHcccHHHHHHHHH-----H-------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHH
Confidence 4566766666666677888764 1 113689999999999999999999555556677888 344433
Q ss_pred -------------C--chHHHHHHhhcccchhhhhccccccc-CCHHHHHHHHhhhhhhhhhhHHHHHH
Q 044495 125 -------------P--SAPIMTRYYMVPYVGLNGYTGSNPFL-CGYLAKRLAAGLLSPESGQDRIVREY 177 (276)
Q Consensus 125 -------------~--~dpfL~~A~~lE~vGvsAY~Gaap~l-~~~~~l~aAa~IlsVEArHaa~IR~l 177 (276)
. .+.+|...--=|+..+.+|.-+...- -.+++....-..+.-+-+|...||.+
T Consensus 70 lhr~w~~lks~~~~~~d~aiL~~~e~gEd~~~~~y~~aL~~~~l~~~~r~~l~~q~~~i~~~~d~i~~l 138 (139)
T TIGR02284 70 LHQFWGKIRATLTPNDDYVVLEEAERGEDRAKKAYDETLADQDTPAAARDVALRQYPGVRACHDVIRAL 138 (139)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 12277777788888888888877654 46667777777777767776666653
No 22
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=85.02 E-value=15 Score=30.89 Aligned_cols=125 Identities=10% Similarity=-0.040 Sum_probs=86.8
Q ss_pred chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc--CC-CCC
Q 044495 47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA--SS-RNF 123 (276)
Q Consensus 47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P--~~-~~F 123 (276)
=++.||=+|+-||--...|..-..-. . .-++ +.....+...+.+|..|..-+.+--..+||.| +. ...
T Consensus 7 ~~~~LN~~l~~E~~a~~~Y~~~~~~~--~------~~~~-~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~ 77 (157)
T TIGR00754 7 VIQHLNKQLTNELTAINQYFLHARMQ--K------NWGL-KELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKL 77 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--H------cCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCC
Confidence 45889999999996655555432100 0 0111 34455677788899999988555555678888 11 111
Q ss_pred C-CchH--HHHHHhhcccchhhhhccccc---ccCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495 124 L-PSAP--IMTRYYMVPYVGLNGYTGSNP---FLCGYLAKRLAAGLLSPESGQDRIVREYLFG 180 (276)
Q Consensus 124 ~-~~dp--fL~~A~~lE~vGvsAY~Gaap---~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~ 180 (276)
. ..|+ .+....-.|......|..... ...|+.....--.|+.-|-.|.-++|+.|..
T Consensus 78 ~~~~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~~~i~eee~h~~~l~~~l~~ 140 (157)
T TIGR00754 78 RIGETVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLEEILEDEEEHIDWLETQLEL 140 (157)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1233 777788888888889988754 5778888888889999999999999998874
No 23
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=80.79 E-value=25 Score=28.78 Aligned_cols=121 Identities=11% Similarity=-0.106 Sum_probs=82.8
Q ss_pred chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhh---cCCcC--CC
Q 044495 47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCH---KVCAS--SR 121 (276)
Q Consensus 47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aL---g~~P~--~~ 121 (276)
..+.||=|+.-|+-....|..-. .... ..++ +.+.+.+..++..|..|..- +.+.| ||.|. ..
T Consensus 2 t~~~L~~a~~~E~~a~~~Y~~~a------~~a~--~~g~-~~~a~~f~~~a~eE~~HA~~---~~~~l~~l~g~~~~~~~ 69 (134)
T cd01041 2 TEKNLLAAFAGESQARNRYTYFA------EKAR--KEGY-EQIARLFRATAENEKEHAKG---HFKLLKGLGGGDTGPPI 69 (134)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHH------HHHH--HCCH-HHHHHHHHHHHHHHHHHHHH---HHHHHhcCCCCCcCCCC
Confidence 35789999999999877776532 1100 1222 46778899999999999988 55554 46664 12
Q ss_pred CCCCchHHHHHHhhcccc-hhhhhccccc---ccCCHHHHHHHHhhhhhhhhhhHHHHHHhh
Q 044495 122 NFLPSAPIMTRYYMVPYV-GLNGYTGSNP---FLCGYLAKRLAAGLLSPESGQDRIVREYLF 179 (276)
Q Consensus 122 ~F~~~dpfL~~A~~lE~v-GvsAY~Gaap---~l~~~~~l~aAa~IlsVEArHaa~IR~lL~ 179 (276)
.|.+....+..+..-|.- -...|.-.+. .-.+.......-.|+-.|.+|..++..+|.
T Consensus 70 ~~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~ 131 (134)
T cd01041 70 GIGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALE 131 (134)
T ss_pred CcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 233222266667777753 4466665444 456677788888999999999999988875
No 24
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=80.43 E-value=7 Score=32.09 Aligned_cols=59 Identities=19% Similarity=0.075 Sum_probs=46.7
Q ss_pred CCchhHHHHHHHHHHHHH-HHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc
Q 044495 45 RDDVDNLQFAQSLEHLEA-ELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK 115 (276)
Q Consensus 45 ~~D~diLNfALnLEyLEA-~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg 115 (276)
.+..++|..++..|.-|+ +.|...+. .. ...-+...++.+++|..+|..|++- |+..|+
T Consensus 72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~------~A---~~e~d~~~~~~f~~i~~~E~~H~~~---l~~~l~ 131 (134)
T cd01041 72 GDTLENLKAAIAGETYEYTEMYPEFAE------VA---EEEGFKEAARSFEAIAEAEKVHAER---YKKALE 131 (134)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHH------HH---HHcCCHHHHHHHHHHHHHHHHHHHH---HHHHhh
Confidence 456699999999999887 78876431 10 2345778999999999999999999 888875
No 25
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=77.84 E-value=5.8 Score=43.65 Aligned_cols=55 Identities=18% Similarity=0.185 Sum_probs=44.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHH-HHHHHHHHHHhhhhhhHhhHHhHHhh
Q 044495 45 RDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNL-TRAIITEFGYQEVGHLRCGHALLQCH 114 (276)
Q Consensus 45 ~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~-~~~~~~eia~~E~~Hv~~~~~L~~aL 114 (276)
.++.++|.+|+-.|.=--+||...+. .--++. .+.++.+|+..|..|++. |.+.+
T Consensus 940 ~~~~~al~lAm~~Ekdai~fY~~la~------------~~~d~e~~k~l~~~LA~EEk~Hl~~---L~~~~ 995 (1006)
T PRK12775 940 DDPGNLFRIAIEFERRAVKFFKERVA------------ETPDGSVERQLYKELAAEEREHVAL---LTTEF 995 (1006)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh------------hCCChHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 45889999999999999999998641 123454 699999999999999999 66554
No 26
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=74.40 E-value=9.7 Score=31.81 Aligned_cols=53 Identities=11% Similarity=-0.006 Sum_probs=46.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHh
Q 044495 42 PLCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRC 106 (276)
Q Consensus 42 ~~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~ 106 (276)
....+|.+.|+.|...|-.--+||...+ ..--++.++.++..++.-|..|.+.
T Consensus 78 ~~~~s~~~al~~g~~~E~~~i~~ye~~~------------~~~~d~d~k~v~~~L~~~e~~H~~~ 130 (135)
T cd01048 78 QGPKSLQDALEVGVLIEELDIADYDRLL------------ERTQNPDIRDVFENLQAASRNHHLP 130 (135)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHH------------HhcccHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999875 2234689999999999999999876
No 27
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=73.34 E-value=49 Score=27.01 Aligned_cols=114 Identities=11% Similarity=0.034 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCCCCCCCchH
Q 044495 49 DNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSRNFLPSAP 128 (276)
Q Consensus 49 diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~~~F~~~dp 128 (276)
+.||=+++-|.-+...|..-+ .... ..++ +.+...+..++..|..|..- +.+.++.+| .+.--
T Consensus 4 ~~L~~a~~~E~~a~~~Y~~~a------~~a~--~eG~-~~~A~~f~~~a~eE~~HA~~---~~~~l~~i~-----~~~~~ 66 (123)
T cd01046 4 EDLEANFKGETTEVGMYLAMA------RVAQ--REGY-PEVAEELKRIAMEEAEHAAR---FAELLGKVS-----EDTKE 66 (123)
T ss_pred HHHHHHHHhHHHHHHHHHHHH------HHHH--HCCC-HHHHHHHHHHHHHHHHHHHH---HHHHHhcCc-----ccHHH
Confidence 578999999999999987642 1110 2233 56888999999999999999 888888776 11111
Q ss_pred HHHHHhhcccchhhhhccccc---ccCCHHHHHHHHhhhhhhhhhhHHHHHHhh
Q 044495 129 IMTRYYMVPYVGLNGYTGSNP---FLCGYLAKRLAAGLLSPESGQDRIVREYLF 179 (276)
Q Consensus 129 fL~~A~~lE~vGvsAY~Gaap---~l~~~~~l~aAa~IlsVEArHaa~IR~lL~ 179 (276)
.+..+.--|.-....|..... .-.+.+....--.|+.+|.+|.-.++.+|.
T Consensus 67 ~le~a~~~E~~~~~~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~ 120 (123)
T cd01046 67 NLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLE 120 (123)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666666664443 345677778888999999999999998875
No 28
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=70.19 E-value=27 Score=28.68 Aligned_cols=59 Identities=19% Similarity=0.093 Sum_probs=47.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc
Q 044495 45 RDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK 115 (276)
Q Consensus 45 ~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg 115 (276)
.+..++|+.++..|.--.+-|..... + . ....|+.+.++++.|..+|..|..+ |++.++
T Consensus 80 ~~~~~~l~~~l~~E~~~~~~y~~~~~---~---A---~~~~D~~t~~~l~~~~~~e~~h~~~---l~~~l~ 138 (153)
T cd00907 80 EDVPEMLENDLALEYEAIAALNEAIA---L---C---EEVGDYVSRDLLEEILEDEEEHIDW---LETQLD 138 (153)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH---H---H---HHcCCHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 46789999999999988888987530 0 0 1246889999999999999999999 877765
No 29
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=69.44 E-value=7.3 Score=34.33 Aligned_cols=93 Identities=22% Similarity=0.100 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCC--C-----CCC--------CchHHHHHHhhcccchhhhhccccc
Q 044495 85 LDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASS--R-----NFL--------PSAPIMTRYYMVPYVGLNGYTGSNP 149 (276)
Q Consensus 85 l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~--~-----~F~--------~~dpfL~~A~~lE~vGvsAY~Gaap 149 (276)
-++.++..+++++.+|..|+.....+-..+|+.|+- + .|. .....+..-...|.+-..=|.....
T Consensus 27 ~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~~~gf~lG~~tal~G~~~a~~~~~avE~~V~~Hy~~ql~ 106 (165)
T cd01042 27 RDPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLWYVAGFALGALTALLGKKAAMACTAAVETVVEEHYNDQLR 106 (165)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999933333445566731 1 121 1122444445567777777888777
Q ss_pred ccC---CHHHHHHHHhhhhhhhhhhHHHHHH
Q 044495 150 FLC---GYLAKRLAAGLLSPESGQDRIVREY 177 (276)
Q Consensus 150 ~l~---~~~~l~aAa~IlsVEArHaa~IR~l 177 (276)
.|. ++.++....++.-=|..|.-.=...
T Consensus 107 ~L~~~~d~~l~~~l~~~r~DE~~H~d~A~~~ 137 (165)
T cd01042 107 ELPAQPDKELRAIIEQFRDDELEHADIAEEL 137 (165)
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 776 7888888888888888887765544
No 30
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=64.66 E-value=24 Score=27.80 Aligned_cols=87 Identities=16% Similarity=0.075 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc-CCCCC---
Q 044495 48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA-SSRNF--- 123 (276)
Q Consensus 48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P-~~~~F--- 123 (276)
++.||=.+..++==-+.|.+++ + .--++..+.++++++.+-..|+.-|.+.-..+|+.| ...+|
T Consensus 3 i~~Ln~Ll~~~~d~~~~Y~~a~-----~-------~~~~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~gs~~g~ 70 (111)
T PF09537_consen 3 IEALNDLLKGLHDGIEGYEKAA-----E-------KAEDPELKSLFQEFAQERQQHAEELQAEIQELGGEPEESGSFKGA 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----H-------H--SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H----HHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----H-------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcccCHHHH
Confidence 5678889999999999999875 1 123699999999999999999999555555577777 22222
Q ss_pred ------------CCchH--HHHHHhhcccchhhhhcc
Q 044495 124 ------------LPSAP--IMTRYYMVPYVGLNGYTG 146 (276)
Q Consensus 124 ------------~~~dp--fL~~A~~lE~vGvsAY~G 146 (276)
...|. +|..+.-=|+.++.+|.-
T Consensus 71 ~~r~~~~ik~~~~~~d~~aiL~~~~~gE~~~~~~y~~ 107 (111)
T PF09537_consen 71 LHRAWMDIKSALGGDDDEAILEECERGEDMALEAYED 107 (111)
T ss_dssp HH-TTTHHHHS-----H--------------------
T ss_pred HHHHHHHHHHHhcCCCccchhhhhhhhhhhhhhhccc
Confidence 22222 566666666666666653
No 31
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=63.82 E-value=19 Score=33.10 Aligned_cols=59 Identities=24% Similarity=0.233 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc
Q 044495 51 LQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA 118 (276)
Q Consensus 51 LNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P 118 (276)
||-|..||+-=--.|+.+.+ .+ +...+..++.+++.|+-+|.-|...-.-|-.++|+.|
T Consensus 1 Lq~Ai~lE~atip~YL~a~y--Si-------~~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P 59 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALY--SI-------KPGTNEEARNLIRSVAIEEMLHLSLAANLLNALGGSP 59 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHH--HB-------S-TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred CcHHHHHHHHHHHHHHHHHc--cc-------CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 57788888777777777652 12 2345566999999999999999999667777788877
No 32
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=61.73 E-value=92 Score=25.76 Aligned_cols=123 Identities=11% Similarity=0.012 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcC-----CC-
Q 044495 48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCAS-----SR- 121 (276)
Q Consensus 48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~-----~~- 121 (276)
++.||=+++.|+--...|..-..- .+ ..++ +.+...++..+.+|..|..-+......+||.|. .+
T Consensus 5 ~~~Ln~~~~~El~A~~~Yl~~a~~--~~------~~~~-~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~ 75 (156)
T cd01055 5 EKALNEQINLELYSSYLYLAMAAW--FD------SKGL-DGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPP 75 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--Hh------hcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCC
Confidence 467999999999888888764210 00 1122 577889999999999999883322233466551 11
Q ss_pred -CCCCchHHHHHHhhcccchhhhhcccccc---cCCHHHHHHHHhhhhhhhhhhHHHHHHhh
Q 044495 122 -NFLPSAPIMTRYYMVPYVGLNGYTGSNPF---LCGYLAKRLAAGLLSPESGQDRIVREYLF 179 (276)
Q Consensus 122 -~F~~~dpfL~~A~~lE~vGvsAY~Gaap~---l~~~~~l~aAa~IlsVEArHaa~IR~lL~ 179 (276)
.|.+....|..+.-.|.--...|.-.... ..|+......-.|+..|..|...++.++.
T Consensus 76 ~~~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~~~l~~q~e~~~~~~~~l~ 137 (156)
T cd01055 76 SEFESLLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQWFVKEQVEEEALARDILD 137 (156)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23222226777777776666666544443 23444444445566666666666665554
No 33
>PRK10635 bacterioferritin; Provisional
Probab=61.01 E-value=44 Score=28.90 Aligned_cols=61 Identities=21% Similarity=0.136 Sum_probs=49.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc
Q 044495 43 LCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK 115 (276)
Q Consensus 43 ~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg 115 (276)
.+.+-.++|...|.+|+=--+.|..++. + . ...-|...++++..|-.+|..|... |.+.|+
T Consensus 79 ~g~~v~eml~~dl~~E~~ai~~y~e~i~---~---a---~~~~D~~s~~ll~~iL~dEe~H~~~---le~~l~ 139 (158)
T PRK10635 79 IGEDVEEMLRSDLRLELEGAKDLREAIA---Y---A---DSVHDYVSRDMMIEILADEEGHIDW---LETELD 139 (158)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH---H---H---HHcCCHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 3456778999999999999999988751 0 0 1236889999999999999999999 887765
No 34
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=59.90 E-value=9 Score=24.02 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhcc
Q 044495 7 EVLLTISFLICISYCL 22 (276)
Q Consensus 7 ~~~~~~~~~~ll~~C~ 22 (276)
+++..+.+.+.|+||+
T Consensus 9 kil~~l~a~~~LagCs 24 (25)
T PF08139_consen 9 KILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 4666777777799997
No 35
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=57.25 E-value=49 Score=29.34 Aligned_cols=74 Identities=20% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHhccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHH
Q 044495 18 ISYCLADQFKYPRACWPTSPLPEPPLCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFG 97 (276)
Q Consensus 18 l~~C~~d~~~~p~~~~~~~p~~~~~~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia 97 (276)
+|||+ |++-|..+.+--.+|.-+..-|.---.=|+.. =++.++-|+.+.++.+.|-
T Consensus 90 ISgC~--------------~a~LPedp~D~~~~l~vlv~AE~CAir~ykei----------c~~T~GkDprTyeLa~~IL 145 (172)
T COG2406 90 ISGCK--------------PAYLPEDPYDIDEILAVLVKAERCAIRAYKEI----------CNLTAGKDPRTYELAEAIL 145 (172)
T ss_pred hcCCC--------------CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHH----------HccccCCCcchHHHHHHHH
Q ss_pred HhhhhhhHhhHHhHHhhcCCc
Q 044495 98 YQEVGHLRCGHALLQCHKVCA 118 (276)
Q Consensus 98 ~~E~~Hv~~~~~L~~aLg~~P 118 (276)
.+|+.|..- +-..|+.-|
T Consensus 146 ~eEi~hr~~---~~~ll~~~~ 163 (172)
T COG2406 146 REEIEHRTW---FLELLGKEP 163 (172)
T ss_pred HHHHHHHHH---HHHHhccCc
No 36
>PRK13456 DNA protection protein DPS; Provisional
Probab=56.47 E-value=49 Score=29.93 Aligned_cols=61 Identities=15% Similarity=-0.008 Sum_probs=51.2
Q ss_pred CchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcC
Q 044495 46 DDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCAS 119 (276)
Q Consensus 46 ~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~ 119 (276)
+-.++|+-.|.-|.--=+-|..... . ..+.||.+++++.+|-.+|..|.+- |+..|++-||
T Consensus 107 dv~~mL~~~L~AEr~AI~~Y~eii~-----~-----~~~kDp~T~~l~~~IL~dE~eH~~d---l~~lL~~~~~ 167 (186)
T PRK13456 107 DPKEILKVLLEAERCAIRTYTEICD-----M-----TAGKDPRTYDLALAILQEEIEHEAW---FSELLGGGPS 167 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----H-----HhcCCccHHHHHHHHHHHHHHHHHH---HHHHHhcCCC
Confidence 4567999999999998899987641 1 2357999999999999999999999 9999998884
No 37
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=54.96 E-value=35 Score=30.14 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=48.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc
Q 044495 43 LCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK 115 (276)
Q Consensus 43 ~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg 115 (276)
.+.+..+.|-+|.-.|.-=-+||.... ..-.+...+.+++.++.||.+|+.. ++.-+.
T Consensus 110 ~~~~~~~~I~~a~~~E~~t~~~Y~~~~------------~~~~~~~~~~~~~~~a~~E~~H~~~---l~~~~~ 167 (176)
T COG1633 110 KSVSYLEAIEAAMEAEKDTIEFYEELL------------DELVNEEAKKLFKTIADDEKGHASG---LLSLYN 167 (176)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH------------HHccCHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 446778899999999999999999864 2345778889999999999999999 776543
No 38
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=54.44 E-value=95 Score=25.26 Aligned_cols=90 Identities=4% Similarity=-0.097 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc-CCC-------CC-----CCchH--HHHHHhhcccchhhhhccccccc
Q 044495 87 NLTRAIITEFGYQEVGHLRCGHALLQCHKVCA-SSR-------NF-----LPSAP--IMTRYYMVPYVGLNGYTGSNPFL 151 (276)
Q Consensus 87 ~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P-~~~-------~F-----~~~dp--fL~~A~~lE~vGvsAY~Gaap~l 151 (276)
..+...+.+.+.+|..|+..+.+=-..||+.| .+. .. ...|+ .+......+.--...|..+....
T Consensus 30 ~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~i~~a 109 (139)
T cd01043 30 FALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPAGVLSAKEMVAELLEDYETLIEELREAIELA 109 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999665556788888 211 00 11222 44444444444445555544442
Q ss_pred ---CCHHHHHHHHhhhhhhhhhhHHHHH
Q 044495 152 ---CGYLAKRLAAGLLSPESGQDRIVRE 176 (276)
Q Consensus 152 ---~~~~~l~aAa~IlsVEArHaa~IR~ 176 (276)
.|+....+.-.|+.-+-.|.-.|+.
T Consensus 110 ~~~~D~~t~~ll~~il~~~ek~~w~l~a 137 (139)
T cd01043 110 DEAGDPATADLLTEIIRELEKQAWMLRA 137 (139)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555544
No 39
>PRK15396 murein lipoprotein; Provisional
Probab=54.22 E-value=12 Score=29.22 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=15.6
Q ss_pred CccchhHHHHHHHHHHHHHhcc
Q 044495 1 MATSKLEVLLTISFLICISYCL 22 (276)
Q Consensus 1 ~~~~~~~~~~~~~~~~ll~~C~ 22 (276)
|-..||-+...+...+||+||.
T Consensus 1 m~~~kl~l~av~ls~~LLaGCA 22 (78)
T PRK15396 1 MNRTKLVLGAVILGSTLLAGCS 22 (78)
T ss_pred CchhHHHHHHHHHHHHHHHHcC
Confidence 4445676666666677899996
No 40
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=54.20 E-value=23 Score=34.51 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=46.4
Q ss_pred HHHHHhhcccchhhhhcccccccCC--HHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495 129 IMTRYYMVPYVGLNGYTGSNPFLCG--YLAKRLAAGLLSPESGQDRIVREYLFG 180 (276)
Q Consensus 129 fL~~A~~lE~vGvsAY~Gaap~l~~--~~~l~aAa~IlsVEArHaa~IR~lL~~ 180 (276)
||.-|-+=|--|---|+=....++| |++.+.-.=+.--|||||+.|+..+..
T Consensus 67 FLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~d 120 (323)
T cd01047 67 FLERSCTSEFSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSD 120 (323)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHH
Confidence 9999999999999999999999966 888888888888899999999887764
No 41
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=53.81 E-value=69 Score=26.51 Aligned_cols=59 Identities=14% Similarity=-0.035 Sum_probs=47.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc
Q 044495 45 RDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK 115 (276)
Q Consensus 45 ~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg 115 (276)
.+-.++|.-+|++|.--.+.|.... +.. ...-|+.+.+++++|..+|+.|++- ++..++
T Consensus 79 ~~~~~~l~~al~~E~~~~~~~~~l~------~~A---~~~~D~~~~~~l~~~l~~q~e~~~~---~~~~l~ 137 (156)
T cd01055 79 ESLLEVFEAALEHEQKVTESINNLV------DLA---LEEKDYATFNFLQWFVKEQVEEEAL---ARDILD 137 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH------HHH---HHcCCHhHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 4566999999999999999998753 110 1235889999999999999999999 777765
No 42
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=51.22 E-value=63 Score=25.33 Aligned_cols=59 Identities=22% Similarity=0.079 Sum_probs=47.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc
Q 044495 45 RDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK 115 (276)
Q Consensus 45 ~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg 115 (276)
.+-.++|..++..|.--.+.|..... .. ...-|+.+.+++.++-.+|..|+.. |++.|+
T Consensus 79 ~~~~~~l~~~l~~e~~~~~~~~~l~~------~a---~~~~D~~t~~~~~~~l~~~~~~~~~---l~~~l~ 137 (142)
T PF00210_consen 79 TDPREALEAALEDEKEIIEEYRELIK------LA---EKEGDPETADFLDEFLEEEEKHIWM---LQAHLT 137 (142)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHH------HH---HHTTSHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH------HH---HhcCCHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 47789999999999999999988641 00 1125899999999999999999999 777664
No 43
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=50.22 E-value=21 Score=33.47 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.2
Q ss_pred cCCHHHHHHHHHHHHhhhhhhHhh
Q 044495 84 NLDNLTRAIITEFGYQEVGHLRCG 107 (276)
Q Consensus 84 ~l~~~~~~~~~eia~~E~~Hv~~~ 107 (276)
.=|....++++.|-.+|++||+++
T Consensus 178 ~gD~~sa~iL~~I~~DEi~HV~~G 201 (253)
T PF04305_consen 178 AGDEESAAILEIILRDEIGHVAIG 201 (253)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 345677889999999999999994
No 44
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=50.19 E-value=16 Score=36.00 Aligned_cols=53 Identities=13% Similarity=0.086 Sum_probs=47.2
Q ss_pred HHHHHhhcccchhhhhcccccccC--CHHHHHHHHhhhhhhhhhhHHHHHHhhhc
Q 044495 129 IMTRYYMVPYVGLNGYTGSNPFLC--GYLAKRLAAGLLSPESGQDRIVREYLFGR 181 (276)
Q Consensus 129 fL~~A~~lE~vGvsAY~Gaap~l~--~~~~l~aAa~IlsVEArHaa~IR~lL~~~ 181 (276)
||.-|-+=|--|---|+=....++ ||++.+.-.=+.--|||||+.|+..+..-
T Consensus 87 FLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 141 (355)
T PRK13654 87 FLERSCTAEFSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDF 141 (355)
T ss_pred HHHHHhhhhhhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHc
Confidence 999999999999999999999998 89888888888888999999998877643
No 45
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=48.80 E-value=35 Score=25.41 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=31.2
Q ss_pred hhhhHHHHHHhhhccccccCCcchhHHHHhhHhhHHhHhhc
Q 044495 168 SGQDRIVREYLFGRADQIVKPYNYTVARMKGFLSLRSLELN 208 (276)
Q Consensus 168 ArHaa~IR~lL~~~~~~~v~Py~~Tva~ft~~iS~lr~~L~ 208 (276)
+.|++.+|+|--+.++. -|-++|.++-..+|..||.+.+
T Consensus 18 ~aQ~syL~tL~e~Age~--~~~~LtkaeAs~rId~L~~~~g 56 (57)
T PF11272_consen 18 GAQASYLKTLSEEAGEP--FPDDLTKAEASERIDELQAQTG 56 (57)
T ss_pred HHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHHHHHHhC
Confidence 56889999877766632 3448999999999999998875
No 46
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=48.01 E-value=62 Score=27.94 Aligned_cols=56 Identities=11% Similarity=-0.043 Sum_probs=46.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc
Q 044495 45 RDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK 115 (276)
Q Consensus 45 ~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg 115 (276)
.+-...|...+..|.=--.-|.+-.. .--||.+++++..|..+|..|... ++++|.
T Consensus 98 ~d~~~~L~~ni~aE~~Ai~~Y~~l~~------------~~~Dp~v~~~l~~I~~rE~~H~~~---f~~~l~ 153 (156)
T cd01051 98 GNLVADLRSNIAAESRARLTYERLYE------------MTDDPGVKDTLSFLLVREIVHQNA---FGKALE 153 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 45667888999999999999988531 113899999999999999999999 888774
No 47
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=45.94 E-value=71 Score=26.07 Aligned_cols=59 Identities=20% Similarity=0.058 Sum_probs=46.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc
Q 044495 45 RDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK 115 (276)
Q Consensus 45 ~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg 115 (276)
.+-.++|+-++..|.-+..-|...+ ... ..--+..+.+.+..++.+|..|.+. ++.+|.
T Consensus 62 ~~~~~~le~a~~~E~~~~~~~~~~~------~~A---~~egd~~~~~~~~~~~~~E~~H~~~---~~~~l~ 120 (123)
T cd01046 62 EDTKENLEMMLEGEAGANEGKKDAA------TEA---KAEGLDEAHDFFHEAAKDEARHGKM---LKGLLE 120 (123)
T ss_pred ccHHHHHHHHHHhHHHHHHhHHHHH------HHH---HHcCCHHHHHHHHHHHHHHHHHHHH---HHHHHh
Confidence 4567999999999999999886542 111 1234678999999999999999999 888764
No 48
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=44.68 E-value=1.1e+02 Score=24.32 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=22.9
Q ss_pred CccchhHHHHHHHHHHHHHhccCCC
Q 044495 1 MATSKLEVLLTISFLICISYCLADQ 25 (276)
Q Consensus 1 ~~~~~~~~~~~~~~~~ll~~C~~d~ 25 (276)
||.|-||+-...+.++|+.-|-.|+
T Consensus 1 MAvSvLrltivlGLlvLIltC~Ad~ 25 (88)
T PF15144_consen 1 MAVSVLRLTIVLGLLVLILTCHADD 25 (88)
T ss_pred CchHHHHHHHHHHHHHHHhhhccCC
Confidence 8999999999999999988998777
No 49
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=42.27 E-value=23 Score=34.82 Aligned_cols=53 Identities=11% Similarity=0.022 Sum_probs=46.1
Q ss_pred HHHHHhhcccchhhhhcccccccCC--HHHHHHHHhhhhhhhhhhHHHHHHhhhc
Q 044495 129 IMTRYYMVPYVGLNGYTGSNPFLCG--YLAKRLAAGLLSPESGQDRIVREYLFGR 181 (276)
Q Consensus 129 fL~~A~~lE~vGvsAY~Gaap~l~~--~~~l~aAa~IlsVEArHaa~IR~lL~~~ 181 (276)
||.-|-+=|--|---|+=....+++ |.+.+.-.=+.--|||||+.|+..+..-
T Consensus 83 FLerScTaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 137 (351)
T CHL00185 83 FLERSCTAEFSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDF 137 (351)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHc
Confidence 8999999999999999999999955 8888888888888999999999877643
No 50
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=42.06 E-value=1.6e+02 Score=26.61 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhhhhhhHhhHHhHHhhc--CCc----CCCCC--------CCchH-----HHHHHhhcccchhhhhcc
Q 044495 86 DNLTRAIITEFGYQEVGHLRCGHALLQCHK--VCA----SSRNF--------LPSAP-----IMTRYYMVPYVGLNGYTG 146 (276)
Q Consensus 86 ~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg--~~P----~~~~F--------~~~dp-----fL~~A~~lE~vGvsAY~G 146 (276)
.+..-+-+..++..|..|.+- .-+.+. |+| .+..+ .+..| -|+.+.++|.=+--=+.=
T Consensus 47 ~~~Lv~~m~~LarEEL~HFeq---V~~im~~Rgi~l~~~~~~~Ya~~L~k~vR~~~p~~llD~Llv~alIEARScERF~l 123 (180)
T cd07910 47 KPELVEAMSDLAREELQHFEQ---VLKIMKKRGIPLGPDSKDPYASGLRKLVRKGEPERLLDRLLVAALIEARSCERFAL 123 (180)
T ss_pred cHhHHHHHHHHHHHHHHHHHH---HHHHHHHcCCCCCCCCCCHHHHHHHHHcccCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 356667788999999999988 444443 444 11112 13344 333344444433333333
Q ss_pred cccccCCHHHHHHHHhhhhhhhhhhHHHHHHhhhcc
Q 044495 147 SNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRA 182 (276)
Q Consensus 147 aap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~~ 182 (276)
.+|.+.+++..+-=.+++--||||-...=.+-.+..
T Consensus 124 La~~l~D~eL~~FY~~Ll~SEarHy~~yl~LA~~y~ 159 (180)
T cd07910 124 LAPALPDPELKKFYRGLLESEARHYELFLDLARKYF 159 (180)
T ss_pred HhccCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 468889999888889999999999887765544433
No 51
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=41.18 E-value=1.5e+02 Score=24.85 Aligned_cols=59 Identities=17% Similarity=0.061 Sum_probs=46.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc
Q 044495 45 RDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK 115 (276)
Q Consensus 45 ~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg 115 (276)
.+-.+++..++..|--=.+.|...+. + . ..--|..+.++++.|..+|..|+.+ |++.|+
T Consensus 81 ~~~~e~l~~~l~~E~~~~~~~~e~i~---~---A---~~~~D~~t~~ll~~~i~eee~h~~~---l~~~l~ 139 (157)
T TIGR00754 81 ETVREMLEADLALELDVLNRLKEAIA---Y---A---EEVRDYVSRDLLEEILEDEEEHIDW---LETQLE 139 (157)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH---H---H---HHcCCHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 45668999999999999999988641 0 0 1234788999999999999999999 888775
No 52
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=40.28 E-value=22 Score=22.03 Aligned_cols=18 Identities=22% Similarity=0.443 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhccCCC
Q 044495 8 VLLTISFLICISYCLADQ 25 (276)
Q Consensus 8 ~~~~~~~~~ll~~C~~d~ 25 (276)
+++.+...+.|+||+...
T Consensus 2 ~~~~~~~~~~LsgCG~KG 19 (24)
T PF13627_consen 2 LLLLLALALALSGCGQKG 19 (24)
T ss_pred hHHHHHHHHHHHhcccCC
Confidence 456666777789998543
No 53
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=40.14 E-value=27 Score=34.41 Aligned_cols=52 Identities=12% Similarity=0.092 Sum_probs=45.7
Q ss_pred HHHHHhhcccchhhhhcccccccCC--HHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495 129 IMTRYYMVPYVGLNGYTGSNPFLCG--YLAKRLAAGLLSPESGQDRIVREYLFG 180 (276)
Q Consensus 129 fL~~A~~lE~vGvsAY~Gaap~l~~--~~~l~aAa~IlsVEArHaa~IR~lL~~ 180 (276)
||.-|-+=|--|---|+=....+++ |.+.+.-.=+.--|||||+.|+..+..
T Consensus 83 FLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~D 136 (357)
T PLN02508 83 FLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSD 136 (357)
T ss_pred HHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHH
Confidence 8999999999999999999999955 888888887888899999999987764
No 54
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=37.84 E-value=27 Score=34.23 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=0.0
Q ss_pred CCCCCCchH--------HHHHHhhcccchhhhhcccccccCCHH--HHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495 120 SRNFLPSAP--------IMTRYYMVPYVGLNGYTGSNPFLCGYL--AKRLAAGLLSPESGQDRIVREYLFG 180 (276)
Q Consensus 120 ~~~F~~~dp--------fL~~A~~lE~vGvsAY~Gaap~l~~~~--~l~aAa~IlsVEArHaa~IR~lL~~ 180 (276)
..+++..|| ||.-|-+=|--|---|+=....+++++ +.+.-.=+.--|||||+.|+..+..
T Consensus 60 ~~~~~~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~d 130 (337)
T TIGR02029 60 DQSWEHIDGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGD 130 (337)
T ss_pred hcchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHH
No 55
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=37.39 E-value=21 Score=31.60 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhccCCCCC
Q 044495 8 VLLTISFLICISYCLADQFK 27 (276)
Q Consensus 8 ~~~~~~~~~ll~~C~~d~~~ 27 (276)
||..++++++|+||++++..
T Consensus 1 ~~~~l~~~~llagCss~~~~ 20 (158)
T PF13798_consen 1 VIPLLSLSLLLAGCSSDEDS 20 (158)
T ss_pred ChHHHHHHHHHHHcCCCCcc
Confidence 46678888999999987643
No 56
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=37.13 E-value=53 Score=30.06 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhccC
Q 044495 7 EVLLTISFLICISYCLA 23 (276)
Q Consensus 7 ~~~~~~~~~~ll~~C~~ 23 (276)
+++..+...++|+||+.
T Consensus 6 ~~~~il~~al~l~GCs~ 22 (200)
T COG3417 6 IYASILLLALFLSGCSS 22 (200)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 44444455566999996
No 57
>COG4902 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.98 E-value=1.8e+02 Score=25.88 Aligned_cols=86 Identities=21% Similarity=0.298 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCC--CCCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccC
Q 044495 8 VLLTISFLICISYCLADQFKYPRACWPTSPLPEP--PLCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANL 85 (276)
Q Consensus 8 ~~~~~~~~~ll~~C~~d~~~~p~~~~~~~p~~~~--~~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l 85 (276)
+++.|+.-+-.+||-... |.+..-+....-+ +.+.....-|=|----|-|-.+-|++--
T Consensus 12 ~l~l~t~v~~~~~~~~gt---~~~s~~~~~~~l~~~plsdeE~nsLiyMrEEEKLARDVYL~LY---------------- 72 (189)
T COG4902 12 VLLLITAVVGISGCQEGT---NSESTDTSGVTLQDSPLSDEEINSLIYMREEEKLARDVYLYLY---------------- 72 (189)
T ss_pred HHHHHHHHHhhhhhccCC---CCCCccchhhcccCCCCChHHHhhHHHHHHHHHHHhhHHhhhh----------------
Confidence 455555555578896432 2211111111112 2334445556677777888888888743
Q ss_pred CHHHHHHHHHHHHhhhhhhHhhHHhHHhhc
Q 044495 86 DNLTRAIITEFGYQEVGHLRCGHALLQCHK 115 (276)
Q Consensus 86 ~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg 115 (276)
+.+-..+++.||..|+.|..+ .+..|.
T Consensus 73 nkw~l~IF~nIA~SEQ~HmDA---Vk~Lle 99 (189)
T COG4902 73 NKWNLPIFRNIAASEQEHMDA---VKSLLE 99 (189)
T ss_pred hccCcHHHHHHHHhHHHHHHH---HHHHHH
Confidence 223345789999999999999 888876
No 58
>PRK11443 lipoprotein; Provisional
Probab=35.50 E-value=34 Score=28.82 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhccCCC
Q 044495 8 VLLTISFLICISYCLADQ 25 (276)
Q Consensus 8 ~~~~~~~~~ll~~C~~d~ 25 (276)
.++.+.+.++|+||..+.
T Consensus 3 ~~~~~~~~~lLsgCa~~~ 20 (124)
T PRK11443 3 KFIAPLLALLLSGCQIDP 20 (124)
T ss_pred HHHHHHHHHHHHhccCCC
Confidence 456666777899997543
No 59
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=31.99 E-value=67 Score=26.03 Aligned_cols=53 Identities=9% Similarity=-0.010 Sum_probs=46.2
Q ss_pred HHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHhhhcccc
Q 044495 132 RYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRADQ 184 (276)
Q Consensus 132 ~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~~~~ 184 (276)
-.+..|.-|..=|.-.+...+++..+..--.|...|-+|..+++.++......
T Consensus 5 ~~~~~E~~~~~~Y~~la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~ 57 (125)
T cd01044 5 KFQKDEITEAAIYRKLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVP 57 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 45567778888899999999999999999999999999999999998876644
No 60
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=31.10 E-value=2.1e+02 Score=23.20 Aligned_cols=59 Identities=14% Similarity=-0.030 Sum_probs=46.6
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhh
Q 044495 43 LCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCH 114 (276)
Q Consensus 43 ~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aL 114 (276)
...+..++|.-++..|.-=.+.|..... . ...-|..+++++.+|-.+|..|+.- ++..|
T Consensus 90 ~~~~~~~~l~~~~~~e~~~i~~~~~~~~-----~-----a~~~D~~t~~ll~~~l~de~~h~~~---~~~~~ 148 (148)
T cd01052 90 DPPDVKGILKVNLKAERCAIKVYKELCD-----M-----THGKDPVTYDLALAILNEEIEHEED---LEELL 148 (148)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHH-----H-----HcCCChHHHHHHHHHHHHHHHHHHH---HHhhC
Confidence 3456789999999999999999988641 0 0125889999999999999999998 76543
No 61
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=30.81 E-value=1.1e+02 Score=27.05 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHhhhhhhHhhHHhHHhhc
Q 044495 86 DNLTRAIITEFGYQEVGHLRCGHALLQCHK 115 (276)
Q Consensus 86 ~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg 115 (276)
++.++..++++..+|..|+.. +.+.|.
T Consensus 31 ~~~~~~~l~~~~~~E~~Hl~~---f~~~l~ 57 (172)
T PF03232_consen 31 DPELRPFLKEMAEEEKDHLAW---FEQLLP 57 (172)
T ss_pred CHHHHHHHHHHHHHHHHHHHH---HHHHhH
Confidence 899999999999999999999 776654
No 62
>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function.; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.
Probab=30.42 E-value=3.9e+02 Score=23.69 Aligned_cols=132 Identities=10% Similarity=0.060 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc--CC--c----C
Q 044495 48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK--VC--A----S 119 (276)
Q Consensus 48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg--~~--P----~ 119 (276)
.+-|-|.+-=|+|--+.|.... +-+-..++..|+.-|+.|... ++..+. +. | .
T Consensus 2 ~~~Ll~m~EEEKlArDvY~~l~----------------~~~g~~~F~NIa~SEq~Hmda---v~~Ll~kY~l~dP~~~~~ 62 (162)
T PF09968_consen 2 IEGLLYMREEEKLARDVYLTLY----------------EKWGLPIFNNIARSEQRHMDA---VKALLEKYGLEDPVEGDP 62 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------------HHH--HHHHHHHHHHHHHHHH---HHHHHHHTT---S-SS-S
T ss_pred hhHHHHHHHHHHHHHHHHHHHH----------------HHcCChHhHHHHHHHHHHHHH---HHHHHHHhCCCCCCccCC
Confidence 4668899999999999998753 122255789999999999999 888887 44 4 3
Q ss_pred CCCCCCch------H-----------HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHhhhcc
Q 044495 120 SRNFLPSA------P-----------IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRA 182 (276)
Q Consensus 120 ~~~F~~~d------p-----------fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~~ 182 (276)
.+.|..-+ - =|.....+|.+-..=+.-+...-+++++...=-.++.--..|-......|-..+
T Consensus 63 ~G~f~~~~lq~LY~~Lv~~G~~S~~dAl~vga~iEe~dI~DL~~~l~~t~~~Di~~Vy~nL~~gS~NHLrAF~r~L~~~g 142 (162)
T PF09968_consen 63 VGVFTNPELQELYNQLVEQGSKSLEDALKVGALIEELDIADLEEALARTDNEDIKTVYENLRRGSRNHLRAFVRQLERYG 142 (162)
T ss_dssp TT--SSHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcCcHHHHHHHHHHHHHhhhcHHHHHHHhHHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35676321 1 233455666666666666666777777776666666555577554433344333
Q ss_pred ccccCCcchhHHHHhhH
Q 044495 183 DQIVKPYNYTVARMKGF 199 (276)
Q Consensus 183 ~~~v~Py~~Tva~ft~~ 199 (276)
....|--++-.+|-.-
T Consensus 143 -~~Y~pq~ls~~e~~~i 158 (162)
T PF09968_consen 143 -VTYTPQYLSQEEFEAI 158 (162)
T ss_dssp ------SSS-HHHHHHH
T ss_pred -CCCCCeecCHHHHHHH
Confidence 3446666666666543
No 63
>PF01375 Enterotoxin_a: Heat-labile enterotoxin alpha chain; InterPro: IPR001144 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer (IPR001835 from INTERPRO) has a membrane-binding function and the A chain is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0003824 catalytic activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TII_C 1LTG_A 1HTL_A 1LTT_C 1LTA_C 1LTB_A 1LTI_A 1LT4_A 1LT3_A 1LTS_A ....
Probab=30.02 E-value=27 Score=32.98 Aligned_cols=22 Identities=45% Similarity=0.746 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHhcCCCCCCCcccccCCCCCcc
Q 044495 226 PRSPEEILRISYGTGNEHVPGRFFPQGGKWKN 257 (276)
Q Consensus 226 ~RTp~qVL~IvY~tg~~~~~GgFfP~G~nG~i 257 (276)
+|+|+||-+. |||+|.|..+..
T Consensus 24 ~RsP~eIk~~----------GGF~prg~~~~~ 45 (259)
T PF01375_consen 24 SRSPEEIKKA----------GGFLPRGDSDGP 45 (259)
T ss_dssp SS-HHHHHHH----------TEE--TTHCSCT
T ss_pred CCCHHHHHHc----------CCCCCCCccccc
Confidence 7999999763 899999987664
No 64
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=28.68 E-value=3.4e+02 Score=22.95 Aligned_cols=108 Identities=11% Similarity=-0.003 Sum_probs=64.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc--CCcCC
Q 044495 43 LCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK--VCASS 120 (276)
Q Consensus 43 ~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg--~~P~~ 120 (276)
.....+..|=..+.-.|+.-+++..-. ..--|++++.++++..+.-..|++. |.+.+. ++|..
T Consensus 14 L~~~Ei~~Lw~~~~~~~~~~~~~~~f~------------~~~~D~dik~~l~~~~~~~~~~i~~---l~~ll~~e~ip~P 78 (166)
T PF11553_consen 14 LNASEIGNLWNNYMANYMSICLLQYFL------------QVAEDKDIKKLLKKGLDLSQKQIEQ---LEKLLKEEGIPVP 78 (166)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHHHHH------------HH---HHHHHHHHHHHHHHHHHHHH---HHHHHHHTT----
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH------------HHcCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCCCCC
Confidence 445677777788888888777766421 1234899999999999999999999 999987 67744
Q ss_pred CCCC-----C------chH-HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhh
Q 044495 121 RNFL-----P------SAP-IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLS 165 (276)
Q Consensus 121 ~~F~-----~------~dp-fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~Ils 165 (276)
..|+ . .|- ++.--+.+--.|+..|..+......+|++..--..+.
T Consensus 79 ~~~~~~~v~~~~~~lfsD~~~l~~~~~~~~~~~~~~~~al~~s~R~Dl~~~f~~~~~ 135 (166)
T PF11553_consen 79 PGFPESDVTDSAPPLFSDKFMLFYISFMSQAGITNYGRALSSSVRNDLRAFFMKFLM 135 (166)
T ss_dssp ---------GGGS-G--HHHHHHHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHH
T ss_pred CCCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4453 1 122 3333344446788888877777766776555444443
No 65
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=27.37 E-value=2e+02 Score=28.18 Aligned_cols=124 Identities=17% Similarity=0.106 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCCCCCCCch
Q 044495 48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSRNFLPSA 127 (276)
Q Consensus 48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~~~F~~~d 127 (276)
...++|+++.=+=.|.+-.+.-+|. .. +..-+|...+++..||.||.-|-.| .++.++.. | ..|
T Consensus 152 ~p~~~~vYtsfQE~AT~vsh~n~~~----~a---~~~~DpvL~~il~~IA~DE~rH~~f---y~~iv~~~-----l-~~d 215 (330)
T PF03405_consen 152 DPYLGFVYTSFQERATQVSHRNTGR----LA---KQAGDPVLAQILGRIAADEARHEAF---YRNIVEAY-----L-ELD 215 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HH---HHTTSHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-----H-HHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH----HH---hhcCChHHHHHHHHHHhhHHHHHHH---HHHHHHHH-----H-hhC
Confidence 4467888876554455543322111 00 1225899999999999999999999 77776521 0 133
Q ss_pred H---HHHHHhhccc----chhhhhcccccc-cCCHHHHHHHHhhhhhhhhhhHHHHHHhhhccccccCC
Q 044495 128 P---IMTRYYMVPY----VGLNGYTGSNPF-LCGYLAKRLAAGLLSPESGQDRIVREYLFGRADQIVKP 188 (276)
Q Consensus 128 p---fL~~A~~lE~----vGvsAY~Gaap~-l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~~~~~v~P 188 (276)
| ++..+.++.. -|..-..|..+. ......+.+-+||-...-+++ ++.-++...+...+..
T Consensus 216 Pd~t~~Ai~~vm~~~f~MPg~~m~dg~d~~lF~~~~a~~a~~GvY~~~dy~d-I~~~l~~~W~i~~~~g 283 (330)
T PF03405_consen 216 PDGTMLAIADVMRNKFRMPGHLMPDGRDPDLFERFSAVAARAGVYTPRDYAD-ILEPLLRRWKIESRTG 283 (330)
T ss_dssp HHHHHHHHHHHHHH----TTTT---SS-TTHHHHHHHHHHHTTSS-HHHHHH-HHHHHHHHTTGGG--S
T ss_pred cHHHHHHHHHHHHHhccCcchhcccCcchHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHhccCcccC
Confidence 4 4444445433 233333354442 244455666678888887777 9999988877665543
No 66
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=26.86 E-value=1.5e+02 Score=27.41 Aligned_cols=94 Identities=13% Similarity=0.008 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHhhhhhhHhhHHhHHhh---c---CCcC--------------CCCCCC--chH-HHHHHhhcccchh
Q 044495 85 LDNLTRAIITEFGYQEVGHLRCGHALLQCH---K---VCAS--------------SRNFLP--SAP-IMTRYYMVPYVGL 141 (276)
Q Consensus 85 l~~~~~~~~~eia~~E~~Hv~~~~~L~~aL---g---~~P~--------------~~~F~~--~dp-fL~~A~~lE~vGv 141 (276)
.++..+.++...-.+|.-|..+ ..+.+ | +.+. ...+.. .++ ++..+.+.|.+ +
T Consensus 110 ~~~~~~~~~~~~i~DE~rH~~m---f~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~Ee~-i 185 (304)
T PF11583_consen 110 PDDDAKRYALTEIADEARHSLM---FARAINRTGRRRGLAPLPPPYPPRRLLRRLARLLPPWERGLLFFAFALVAEEI-I 185 (304)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTT----S--HHHHHHHHHHHTS-SHHHHHHHHHHHHHHHHHS-B
T ss_pred CCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhcCcccCCCCCchHHHHHHHHHhcccccchHHHHHHHHHHHHH-H
Confidence 4567778888888899999988 55443 3 1211 111111 122 56666667655 6
Q ss_pred hhhccccccc--CCHHHHHHHHhhhhhhhhhhHHHHHHhhhcc
Q 044495 142 NGYTGSNPFL--CGYLAKRLAAGLLSPESGQDRIVREYLFGRA 182 (276)
Q Consensus 142 sAY~Gaap~l--~~~~~l~aAa~IlsVEArHaa~IR~lL~~~~ 182 (276)
..|......= ..|-++....-.+.-|+||.++-|..+...-
T Consensus 186 ~~~~~~~~~D~~iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~~ 228 (304)
T PF11583_consen 186 DAYQREIARDETIQPLVRQVMRIHVRDEARHIAFAREELRRVW 228 (304)
T ss_dssp HHHHHHHHT-SSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6776432211 1233444444444459999999999877543
No 67
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=26.66 E-value=60 Score=25.93 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHhccC
Q 044495 5 KLEVLLTISFLICISYCLA 23 (276)
Q Consensus 5 ~~~~~~~~~~~~ll~~C~~ 23 (276)
||-+...+...+||+||.+
T Consensus 4 klll~aviLs~~LLaGCAs 22 (85)
T PRK09973 4 IFTVGAVVLATCLLSGCVN 22 (85)
T ss_pred hHHHHHHHHHHHHHHHcCC
Confidence 4555555665677999974
No 68
>PHA02118 hypothetical protein
Probab=25.89 E-value=99 Score=28.36 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHhccCCCC
Q 044495 5 KLEVLLTISFLICISYCLADQF 26 (276)
Q Consensus 5 ~~~~~~~~~~~~ll~~C~~d~~ 26 (276)
|| .|+..++++.|+||.+.+.
T Consensus 6 ~l-~imAaa~slALAaC~~~~~ 26 (202)
T PHA02118 6 KM-GIMAAFVSAALSGCGQANT 26 (202)
T ss_pred HH-HHHHhHHHHHHhccCCccc
Confidence 44 3444444778899976654
No 69
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=25.60 E-value=62 Score=25.46 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=31.2
Q ss_pred ccchhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 044495 2 ATSKLEVLLTISFLICISYCLADQFKYPRACWPTSPLPEPPLCRDDVDNLQFAQSLEHLEAELF 65 (276)
Q Consensus 2 ~~~~~~~~~~~~~~~ll~~C~~d~~~~p~~~~~~~p~~~~~~~~~D~diLNfALnLEyLEA~FY 65 (276)
-+-|+-+-+.++-+++|+||+...-.+ .-.+|+.-||-. .+.||.+-=
T Consensus 2 ~~~~m~l~Avvlg~lllAGc~s~aK~d--------------qlss~vq~LnAk--v~qLe~dv~ 49 (78)
T COG4238 2 KTTKMTLGAVVLGSLLLAGCSSNAKID--------------QLSSDVQTLNAK--VDQLENDVN 49 (78)
T ss_pred CcchhhHHHHHHHHHHHHhcchHHHHH--------------HHHHHHHHHHHH--HHHHHHHHH
Confidence 344777888888889999998644211 124677777754 456776543
No 70
>PF11220 DUF3015: Protein of unknown function (DUF3015); InterPro: IPR021383 This bacterial family of proteins has no known function.
Probab=25.29 E-value=90 Score=27.06 Aligned_cols=48 Identities=13% Similarity=-0.030 Sum_probs=38.6
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhhccccccCCcchhHHHHhhHhhH
Q 044495 155 LAKRLAAGLLSPESGQDRIVREYLFGRADQIVKPYNYTVARMKGFLSL 202 (276)
Q Consensus 155 ~~l~aAa~IlsVEArHaa~IR~lL~~~~~~~v~Py~~Tva~ft~~iS~ 202 (276)
++|.+.+.++.|++.|.+.++..+.++-.+++..-.+|-.++.+.|-+
T Consensus 84 E~L~ala~llgv~~~d~~~f~~~~q~nF~~if~s~~~t~~~v~~~i~~ 131 (144)
T PF11220_consen 84 EHLDALAELLGVPAEDRAAFGAVLQENFASIFPSESVTSEEVLDNIVA 131 (144)
T ss_pred chHHHHHHHhCCCHhhHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 368899999999999999999999988888777777777766544433
No 71
>TIGR02747 TraV type IV conjugative transfer system lipoprotein TraV. The TraV protein is a component of conjugative type IV secretion systems. TraV is an outer membrane lipoprotein and is believed to interact with the secretin TraK. The alignment contains three conserved cysteines in the N-terminal half.
Probab=24.60 E-value=34 Score=29.74 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHhccC
Q 044495 5 KLEVLLTISFLICISYCLA 23 (276)
Q Consensus 5 ~~~~~~~~~~~~ll~~C~~ 23 (276)
|+++++.++.+.||+||+.
T Consensus 2 ~~~~l~~~~~~alLtGCsa 20 (144)
T TIGR02747 2 RIRFLLLIACVAFLTGCSA 20 (144)
T ss_pred ceeehhHHHHHHHhhcccC
Confidence 5566666666666999964
No 72
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=24.37 E-value=1e+02 Score=26.47 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhccCCC
Q 044495 7 EVLLTISFLICISYCLADQ 25 (276)
Q Consensus 7 ~~~~~~~~~~ll~~C~~d~ 25 (276)
|+++..-+.++|+||+--+
T Consensus 2 R~l~~~LL~L~LsGCS~l~ 20 (133)
T PRK10781 2 RALPICLLALMLTGCSMLS 20 (133)
T ss_pred chHHHHHHHHHHhhccccC
Confidence 5566666678899998554
No 73
>PF12262 Lipase_bact_N: Bacterial virulence factor lipase N-terminal
Probab=23.94 E-value=48 Score=31.37 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHhccCCCC
Q 044495 5 KLEVLLTISFLICISYCLADQF 26 (276)
Q Consensus 5 ~~~~~~~~~~~~ll~~C~~d~~ 26 (276)
|+-+.+.+..+++|+||++|+.
T Consensus 3 k~~l~~~l~sal~L~GCg~~s~ 24 (268)
T PF12262_consen 3 KLLLSSALASALGLAGCGGDSE 24 (268)
T ss_pred hHHHHHHHHHHHHeeecCCCcc
Confidence 4444444455666899998863
No 74
>PF14292 SusE: SusE outer membrane protein
Probab=23.90 E-value=56 Score=26.41 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=10.1
Q ss_pred HHHHHHhccCCCC
Q 044495 14 FLICISYCLADQF 26 (276)
Q Consensus 14 ~~~ll~~C~~d~~ 26 (276)
+.+++++|.+|+.
T Consensus 4 ~~l~l~sC~~D~~ 16 (122)
T PF14292_consen 4 ALLLLTSCEDDDD 16 (122)
T ss_pred HhhhhcccCCCCc
Confidence 4566899999984
No 75
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=23.44 E-value=24 Score=35.96 Aligned_cols=17 Identities=35% Similarity=0.258 Sum_probs=13.4
Q ss_pred CCCCCcccccCCCCCcc
Q 044495 241 NEHVPGRFFPQGGKWKN 257 (276)
Q Consensus 241 ~~~~~GgFfP~G~nG~i 257 (276)
|-..-|||||+|..|-+
T Consensus 190 nl~~hGGffP~G~~g~~ 206 (462)
T COG1113 190 NLWDHGGFFPNGFLGFL 206 (462)
T ss_pred ccccCCCcCCCchHHHH
Confidence 33567999999999854
No 76
>PRK11372 lysozyme inhibitor; Provisional
Probab=22.23 E-value=70 Score=26.25 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhccCC
Q 044495 7 EVLLTISFLICISYCLAD 24 (276)
Q Consensus 7 ~~~~~~~~~~ll~~C~~d 24 (276)
+-++++...++|+||+.-
T Consensus 4 k~ll~~~~~~lL~gCs~~ 21 (109)
T PRK11372 4 KKLLIICLPVLLTGCSAY 21 (109)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 345677778889999853
No 77
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=22.13 E-value=80 Score=27.96 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=42.4
Q ss_pred ccchhhhhcccccccC-CHHHHHHHHhhhhhhhhhhHHHHHHhhhccccccCCc
Q 044495 137 PYVGLNGYTGSNPFLC-GYLAKRLAAGLLSPESGQDRIVREYLFGRADQIVKPY 189 (276)
Q Consensus 137 E~vGvsAY~Gaap~l~-~~~~l~aAa~IlsVEArHaa~IR~lL~~~~~~~v~Py 189 (276)
|.--+.-|.|..-.+. ++........+...|..|-.+++.++.+++ ++|.
T Consensus 14 E~~A~~iY~gQ~~~~~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~---~RpS 64 (172)
T PF03232_consen 14 EVGAVRIYRGQLAVARRDPELRPFLKEMAEEEKDHLAWFEQLLPELR---VRPS 64 (172)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHcC---CCCc
Confidence 4344566999999999 999999999999999999999999999875 4554
No 78
>PF05917 DUF874: Helicobacter pylori protein of unknown function (DUF874); InterPro: IPR008592 This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.
Probab=21.02 E-value=60 Score=31.77 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhccCCCC
Q 044495 10 LTISFLICISYCLADQF 26 (276)
Q Consensus 10 ~~~~~~~ll~~C~~d~~ 26 (276)
+|+.+++||++|+.||.
T Consensus 107 ltiaTslLlaaC~agD~ 123 (398)
T PF05917_consen 107 LTIATSLLLAACSAGDI 123 (398)
T ss_pred HHHHHHHHHHHHhccch
Confidence 68888999999998773
No 79
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=20.85 E-value=92 Score=28.46 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=18.3
Q ss_pred chhHHHHHHHHHHHHHhccCCC
Q 044495 4 SKLEVLLTISFLICISYCLADQ 25 (276)
Q Consensus 4 ~~~~~~~~~~~~~ll~~C~~d~ 25 (276)
.++.+++.+..++.|+||+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (289)
T TIGR03659 2 KILSLILLALLSLGLTGCSSSK 23 (289)
T ss_pred chhHHHHHHHHHHHHHhccccc
Confidence 3677888888899999999774
No 80
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=20.71 E-value=4e+02 Score=23.66 Aligned_cols=77 Identities=12% Similarity=-0.049 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhhhhhHhhHHhHHhhcC--Cc--------------CCCCCCCchH-HHHHHhhcccchhhhhccccc
Q 044495 87 NLTRAIITEFGYQEVGHLRCGHALLQCHKV--CA--------------SSRNFLPSAP-IMTRYYMVPYVGLNGYTGSNP 149 (276)
Q Consensus 87 ~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~--~P--------------~~~~F~~~dp-fL~~A~~lE~vGvsAY~Gaap 149 (276)
+.+..++++|+..|..|..- +-..||. .+ ..+.+...-| |...|.--.
T Consensus 36 ~~va~lfr~iA~~E~~HA~~---~~~~l~~~~~~~~~~~eNl~~aieGE~~e~~emyp~~ae~A~~~g------------ 100 (166)
T COG1592 36 PEIARLFRAIAEAEAVHAKN---HLKLLGKLLLVLGDTRENLEEAIEGETYEITEMYPVFAEVAEEEG------------ 100 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhcccccccccHHHHHHHHHccchHHHHHhChHHHHHHHHcC------------
Confidence 68899999999999999977 6666652 11 1222223333 555443332
Q ss_pred ccCCHHHHHHHHhhhhhhhhhhHHHHHHhhhc
Q 044495 150 FLCGYLAKRLAAGLLSPESGQDRIVREYLFGR 181 (276)
Q Consensus 150 ~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~ 181 (276)
.+++....--+.-+|.+|+...|.+|..-
T Consensus 101 ---~~~~a~~f~~~~~~Ek~H~~~~~~~Le~~ 129 (166)
T COG1592 101 ---FKEAARSFRAAAKAEKRHAEMFRGLLERL 129 (166)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555667778999999999998764
No 81
>PRK10175 lipoprotein; Provisional
Probab=20.25 E-value=48 Score=25.96 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhccC
Q 044495 7 EVLLTISFLICISYCLA 23 (276)
Q Consensus 7 ~~~~~~~~~~ll~~C~~ 23 (276)
|+++.....++|+||+.
T Consensus 2 ~~~~~~~~~~~lsGCgS 18 (75)
T PRK10175 2 RLIVVSIMVTLLSGCGS 18 (75)
T ss_pred eeHHHHHHHHHhccchh
Confidence 56666677778999984
No 82
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=20.09 E-value=6.9e+02 Score=23.03 Aligned_cols=76 Identities=20% Similarity=0.186 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhhhhhhHhhHHhHHhhc---CCcCCCCCCCchH-HHHHHhhcccchhhhhcccccccCCHHHHHHHH
Q 044495 86 DNLTRAIITEFGYQEVGHLRCGHALLQCHK---VCASSRNFLPSAP-IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAA 161 (276)
Q Consensus 86 ~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg---~~P~~~~F~~~dp-fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa 161 (276)
++..+-.++|+++||+.|... ..+-|- ..|+ -++| |-..+|.+ |+ .+.+|.+|..+.-..
T Consensus 69 ~~~~R~~l~em~d~E~~HL~~---f~~~l~e~~vRPs-----ll~P~W~~~~Fal---GA-----~a~Llgdk~am~~te 132 (204)
T COG2941 69 SPEPRIQLKEMADEEIDHLAW---FEQRLLELGVRPS-----LLNPLWYAAAFAL---GA-----GAGLLGDKAAMGFTE 132 (204)
T ss_pred CcchHHHHHHHHHHHHHHHHH---HHHHHHHccCCcc-----HHHHHHHHHHHHH---HH-----HHhhcccHHHHHHHH
Confidence 456677999999999999998 665543 4553 2566 33333333 11 123666776665555
Q ss_pred hhhhhhhhh-hHHHHHH
Q 044495 162 GLLSPESGQ-DRIVREY 177 (276)
Q Consensus 162 ~IlsVEArH-aa~IR~l 177 (276)
+.=.|=..| +.-||.+
T Consensus 133 avE~vIe~Hy~~ql~~L 149 (204)
T COG2941 133 AVETVIEKHYDGQLREL 149 (204)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 554442223 4444544
Done!