BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>044496
MDYSLAALKLLCVQLKDARESPSQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTG
VVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREA
MWYLEVMEAYKLFYQPLIEDFV

High Scoring Gene Products

Symbol, full name Information P value
AT1G08390 protein from Arabidopsis thaliana 8.9e-38
RMI2
RecQ-mediated genome instability protein 2 		protein from Gallus gallus 0.00073

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044496
        (142 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2201846 - symbol:AT1G08390 species:3702 "Arabi...   405  8.9e-38   1
UNIPROTKB|Q5ZM20 - symbol:RMI2 "RecQ-mediated genome inst...    82  0.00073   2


>TAIR|locus:2201846 [details] [associations]
            symbol:AT1G08390 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002684 KO:K15365
            EMBL:AY090919 IPI:IPI00542751 RefSeq:NP_172315.1 UniGene:At.42263
            ProteinModelPortal:Q8RX36 SMR:Q8RX36 PRIDE:Q8RX36
            EnsemblPlants:AT1G08390.1 GeneID:837359 KEGG:ath:AT1G08390
            TAIR:At1g08390 HOGENOM:HOG000006045 InParanoid:Q8RX36 OMA:DREAMWY
            PhylomeDB:Q8RX36 ProtClustDB:CLSN2682799 ArrayExpress:Q8RX36
            Genevestigator:Q8RX36 Uniprot:Q8RX36
        Length = 137

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 80/143 (55%), Positives = 105/143 (73%)

Query:     1 MDYSLAALKLLCVQLKDARESPSQNAVTLGGILFQRVWLQGVLV--SPPXXXXXXXXXXX 58
             MDYSLAA+K+LC QL+DA+ +PSQNA +LGG+LFQR WLQGVLV  S             
Sbjct:     1 MDYSLAAVKMLCSQLRDAKPTPSQNAASLGGVLFQRAWLQGVLVPFSGGGGDNCLVLDDG 60

Query:    59 XXVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDR 118
               ++++ L+ DF +R+W +G       MYVMVVG + +RT  IP++KVHK+VDLS  PDR
Sbjct:    61 TGLLELGLTNDFALRQWKSG-------MYVMVVGVYQVRTGQIPLLKVHKMVDLSVSPDR 113

Query:   119 EAMWYLEVMEAYKLFYQPLIEDF 141
             EAMWYLEVM+AY+LFY+PLI++F
Sbjct:   114 EAMWYLEVMDAYRLFYEPLIQEF 136


>UNIPROTKB|Q5ZM20 [details] [associations]
            symbol:RMI2 "RecQ-mediated genome instability protein 2"
            species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] GO:GO:0005634 GO:GO:0005737
            GO:GO:0003677 GO:GO:0006260 CTD:116028 eggNOG:NOG27893
            HOGENOM:HOG000154149 HOVERGEN:HBG108410 KO:K15365 OrthoDB:EOG44XJJ2
            EMBL:AJ719564 IPI:IPI00582864 RefSeq:NP_001006174.1
            UniGene:Gga.39357 STRING:Q5ZM20 Ensembl:ENSGALT00000011592
            GeneID:416628 KEGG:gga:416628 GeneTree:ENSGT00390000001653
            InParanoid:Q5ZM20 NextBio:20820058 ArrayExpress:Q5ZM20
            Uniprot:Q5ZM20
        Length = 137

 Score = 82 (33.9 bits), Expect = 0.00073, Sum P(2) = 0.00073
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query:    87 YVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREAMWYLEVMEAYKL 132
             YVMV+G  V      PV++  K+ DLS  P  E MW LEV E +++
Sbjct:    91 YVMVMG-MVRACSPEPVLRAIKMTDLSENPVHEEMWGLEVEELHRV 135

 Score = 34 (17.0 bits), Expect = 0.00073, Sum P(2) = 0.00073
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query:     8 LKLLCVQLKDARESP------SQNAVTLGGILFQRVWLQGVLV 44
             LK+L  QL+ A          S+       +  + VW+QG ++
Sbjct:    10 LKVLAAQLRAAGRGAGGTWRLSRTETGRAPLCLRAVWMQGTVL 52


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.145   0.461    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      142       129   0.00091  102 3  11 21  0.43    30
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  588 (63 KB)
  Total size of DFA:  143 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.49u 0.11s 10.60t   Elapsed:  00:00:00
  Total cpu time:  10.49u 0.11s 10.60t   Elapsed:  00:00:00
  Start:  Thu May  9 20:16:09 2013   End:  Thu May  9 20:16:09 2013

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