BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044496
(142 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224131682|ref|XP_002328082.1| predicted protein [Populus trichocarpa]
gi|118483555|gb|ABK93675.1| unknown [Populus trichocarpa]
gi|222837597|gb|EEE75962.1| predicted protein [Populus trichocarpa]
Length = 134
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/142 (75%), Positives = 123/142 (86%), Gaps = 8/142 (5%)
Query: 1 MDYSLAALKLLCVQLKDARESPSQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTG 60
MDYSLAALKLLCVQLKDA E+PSQNA+TLGGILFQR WLQG+LVS D DGRLLLDDGTG
Sbjct: 1 MDYSLAALKLLCVQLKDASETPSQNALTLGGILFQRAWLQGILVSN-DGDGRLLLDDGTG 59
Query: 61 VVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREA 120
V+++ LS DFR+R W++G MYVMVVGG+ +R + P+IKVHK+VDLSAFPDREA
Sbjct: 60 VIELCLSPDFRLRHWDSG-------MYVMVVGGYFVRHGETPMIKVHKMVDLSAFPDREA 112
Query: 121 MWYLEVMEAYKLFYQPLIEDFV 142
MWYLEVMEAYKLFYQPLIE+F+
Sbjct: 113 MWYLEVMEAYKLFYQPLIEEFM 134
>gi|225436377|ref|XP_002271178.1| PREDICTED: recQ-mediated genome instability protein 2 [Vitis
vinifera]
gi|297734866|emb|CBI17100.3| unnamed protein product [Vitis vinifera]
Length = 134
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 93/141 (65%), Positives = 112/141 (79%), Gaps = 8/141 (5%)
Query: 1 MDYSLAALKLLCVQLKDARESPSQNAVTLGGILFQRVWLQGVLVSPPDD-DGRLLLDDGT 59
MDYSLAALK++C QL+ A+E+ SQNA TLGG+LFQR WLQGVLVS DD GR +LDDGT
Sbjct: 1 MDYSLAALKVMCGQLRKAKETTSQNAFTLGGVLFQRAWLQGVLVSVSDDAQGRFVLDDGT 60
Query: 60 GVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDRE 119
GV+ + LSGDF R W G MYVMVVGG+ +R+ + P+IKVHKIVDLS FPDRE
Sbjct: 61 GVIHLSLSGDFLHRNWKIG-------MYVMVVGGYFVRSGEPPMIKVHKIVDLSPFPDRE 113
Query: 120 AMWYLEVMEAYKLFYQPLIED 140
+MWYLEV+EA++LFYQPL E+
Sbjct: 114 SMWYLEVIEAFRLFYQPLYEE 134
>gi|449443382|ref|XP_004139456.1| PREDICTED: recQ-mediated genome instability protein 2-like isoform
2 [Cucumis sativus]
gi|449501627|ref|XP_004161421.1| PREDICTED: recQ-mediated genome instability protein 2-like [Cucumis
sativus]
Length = 135
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 91/142 (64%), Positives = 110/142 (77%), Gaps = 7/142 (4%)
Query: 1 MDYSLAALKLLCVQLKDARESPSQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTG 60
MDYSL ALKLLC QLKDAR +PS LGGILFQR WLQG+LVS ++G+L+LDD TG
Sbjct: 1 MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
Query: 61 VVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREA 120
V++ LS DF +R W+ G MYVMVVG F+ RT+++P I VHKI+DLS P+REA
Sbjct: 61 TVELSLSRDFLLRPWSLG-------MYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREA 113
Query: 121 MWYLEVMEAYKLFYQPLIEDFV 142
MWYLEVMEAYKLFY+PL+EDF+
Sbjct: 114 MWYLEVMEAYKLFYEPLVEDFL 135
>gi|449443380|ref|XP_004139455.1| PREDICTED: recQ-mediated genome instability protein 2-like isoform
1 [Cucumis sativus]
Length = 164
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/164 (57%), Positives = 115/164 (70%), Gaps = 22/164 (13%)
Query: 1 MDYSLAALKLLCVQLKDARESPSQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTG 60
MDYSL ALKLLC QLKDAR +PS LGGILFQR WLQG+LVS ++G+L+LDD TG
Sbjct: 1 MDYSLGALKLLCRQLKDARGTPSHPTANLGGILFQRAWLQGILVSVDKENGKLILDDATG 60
Query: 61 VVQIYLSGDFRIRRWNTGV--------------------FFFDFW--MYVMVVGGFVIRT 98
V++ LS DF +R W+ G+ FFF F MYVMVVG F+ RT
Sbjct: 61 TVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFFCFCSGMYVMVVGAFLFRT 120
Query: 99 DDIPVIKVHKIVDLSAFPDREAMWYLEVMEAYKLFYQPLIEDFV 142
+++P I VHKI+DLS P+REAMWYLEVMEAYKLFY+PL+EDF+
Sbjct: 121 NELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL 164
>gi|297843618|ref|XP_002889690.1| hypothetical protein ARALYDRAFT_470900 [Arabidopsis lyrata subsp.
lyrata]
gi|297335532|gb|EFH65949.1| hypothetical protein ARALYDRAFT_470900 [Arabidopsis lyrata subsp.
lyrata]
Length = 136
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 90/142 (63%), Positives = 113/142 (79%), Gaps = 8/142 (5%)
Query: 1 MDYSLAALKLLCVQLKDARESPSQNAVTLGGILFQRVWLQGVLVS-PPDDDGRLLLDDGT 59
MDYSLAA+K+LC QL+DA+ +PSQNA LGG+LFQR WLQGVLV D ++LDDGT
Sbjct: 1 MDYSLAAVKMLCSQLRDAKPTPSQNATALGGVLFQRAWLQGVLVPISGGGDNHMVLDDGT 60
Query: 60 GVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDRE 119
G+V++ LS DF +R+W +G MYVMVVG + IRT DIP++KVHK+VDLS PDRE
Sbjct: 61 GLVELGLSSDFALRQWKSG-------MYVMVVGVYHIRTGDIPLLKVHKMVDLSVSPDRE 113
Query: 120 AMWYLEVMEAYKLFYQPLIEDF 141
AMWYLEVM+AY+LFY+PLI++F
Sbjct: 114 AMWYLEVMDAYRLFYEPLIQEF 135
>gi|15223204|ref|NP_172315.1| uncharacterized protein [Arabidopsis thaliana]
gi|20258784|gb|AAM13914.1| unknown protein [Arabidopsis thaliana]
gi|332190163|gb|AEE28284.1| uncharacterized protein [Arabidopsis thaliana]
Length = 137
Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 88/143 (61%), Positives = 114/143 (79%), Gaps = 9/143 (6%)
Query: 1 MDYSLAALKLLCVQLKDARESPSQNAVTLGGILFQRVWLQGVLV--SPPDDDGRLLLDDG 58
MDYSLAA+K+LC QL+DA+ +PSQNA +LGG+LFQR WLQGVLV S D L+LDDG
Sbjct: 1 MDYSLAAVKMLCSQLRDAKPTPSQNAASLGGVLFQRAWLQGVLVPFSGGGGDNCLVLDDG 60
Query: 59 TGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDR 118
TG++++ L+ DF +R+W +G MYVMVVG + +RT IP++KVHK+VDLS PDR
Sbjct: 61 TGLLELGLTNDFALRQWKSG-------MYVMVVGVYQVRTGQIPLLKVHKMVDLSVSPDR 113
Query: 119 EAMWYLEVMEAYKLFYQPLIEDF 141
EAMWYLEVM+AY+LFY+PLI++F
Sbjct: 114 EAMWYLEVMDAYRLFYEPLIQEF 136
>gi|117166018|dbj|BAF36320.1| hypothetical protein [Ipomoea trifida]
Length = 143
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/147 (62%), Positives = 108/147 (73%), Gaps = 13/147 (8%)
Query: 1 MDYSLAALKLLCVQLKDARE--SPSQNAVTLGGILFQRVWLQGVLVS---PPDDDGRLLL 55
MDYSL ALK+LC L A E S SQ A +LGGILFQRVWLQGVLVS P +D GR LL
Sbjct: 1 MDYSLGALKILCSHLTTATEATSHSQPAFSLGGILFQRVWLQGVLVSKPSPSNDAGRFLL 60
Query: 56 DDGTGVVQIYLSGDF-RIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSA 114
DDGTGV+++ LSGD+ + W G MYVMVVGG+ +R + IKVHKIVDLS
Sbjct: 61 DDGTGVIELKLSGDYLQNDAWELG-------MYVMVVGGYAVRKNGTSFIKVHKIVDLSP 113
Query: 115 FPDREAMWYLEVMEAYKLFYQPLIEDF 141
PDREAMWYLEV+EA++LFYQPLIE++
Sbjct: 114 VPDREAMWYLEVVEAFRLFYQPLIEEY 140
>gi|224065533|ref|XP_002301844.1| predicted protein [Populus trichocarpa]
gi|222843570|gb|EEE81117.1| predicted protein [Populus trichocarpa]
Length = 205
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/142 (64%), Positives = 103/142 (72%), Gaps = 28/142 (19%)
Query: 1 MDYSLAALKLLCVQLKDARESPSQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTG 60
MDYSLAALKLL VQLKD E+PSQNA+TLGGILFQR WLQG+LVS D DGRLLLDDGTG
Sbjct: 20 MDYSLAALKLLRVQLKDTSETPSQNALTLGGILFQRAWLQGILVS-NDGDGRLLLDDGTG 78
Query: 61 VVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREA 120
V+++ LSGDFR+R W+ G MYVMVVGG+ +R EA
Sbjct: 79 VIELCLSGDFRLRHWDLG-------MYVMVVGGYFVRP--------------------EA 111
Query: 121 MWYLEVMEAYKLFYQPLIEDFV 142
MWYLEVMEAYKLFYQPLIE+F+
Sbjct: 112 MWYLEVMEAYKLFYQPLIEEFI 133
>gi|356539406|ref|XP_003538189.1| PREDICTED: recQ-mediated genome instability protein 2-like [Glycine
max]
Length = 142
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/150 (62%), Positives = 109/150 (72%), Gaps = 16/150 (10%)
Query: 1 MDYSLAALKLLCVQLKDARE--------SPSQNAVTLGGILFQRVWLQGVLVSPPDDDGR 52
MDY LAALKL C QLK ARE S SQ++ TLGG+LFQR WLQGVLVS D G
Sbjct: 1 MDYDLAALKLFCSQLKQAREVAMPCQTQSQSQSSFTLGGLLFQRPWLQGVLVSA-SDAGS 59
Query: 53 LLLDDGTGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDL 112
LLLDDGT +V++ L+ +FR R W G MYVMVVGG+ R +P+IKVHKIVDL
Sbjct: 60 LLLDDGTDLVELSLNSEFRHRPWKLG-------MYVMVVGGYAARPGKLPMIKVHKIVDL 112
Query: 113 SAFPDREAMWYLEVMEAYKLFYQPLIEDFV 142
S+ P+REAMWYLEVMEAYKLFYQPL+E+F
Sbjct: 113 SSSPNREAMWYLEVMEAYKLFYQPLVEEFT 142
>gi|45935131|gb|AAS79589.1| hypothetical protein [Ipomoea trifida]
Length = 155
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/159 (57%), Positives = 108/159 (67%), Gaps = 25/159 (15%)
Query: 1 MDYSLAALKLLCVQLKDARE--SPSQNAVTLGGILFQRVWLQGVLVS---PPDDDGRLLL 55
MDYSL ALK+LC L A E S SQ A +LGGILFQRVWLQGVLVS P +D GR LL
Sbjct: 1 MDYSLGALKILCSHLTTATEATSHSQPAFSLGGILFQRVWLQGVLVSKPSPSNDAGRFLL 60
Query: 56 DDGTGVVQIYLSGDF-RIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIK--------- 105
DDGTGV+++ LSGD+ + W G MYVMVVGG+ +R + IK
Sbjct: 61 DDGTGVIELKLSGDYLQNDAWELG-------MYVMVVGGYAVRKNGTSFIKMRDQEECIS 113
Query: 106 ---VHKIVDLSAFPDREAMWYLEVMEAYKLFYQPLIEDF 141
VHKIVDLS PDREAMWYLEV+EA++LFYQPLIE++
Sbjct: 114 FSKVHKIVDLSPVPDREAMWYLEVVEAFRLFYQPLIEEY 152
>gi|110737424|dbj|BAF00656.1| hypothetical protein [Arabidopsis thaliana]
Length = 114
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/120 (60%), Positives = 93/120 (77%), Gaps = 9/120 (7%)
Query: 24 QNAVTLGGILFQRVWLQGVLV--SPPDDDGRLLLDDGTGVVQIYLSGDFRIRRWNTGVFF 81
QNA +LGG+LFQR WLQGVLV S D L+LDDGTG++++ L+ DF +R+W +G
Sbjct: 1 QNAASLGGVLFQRAWLQGVLVPFSGGGGDNCLVLDDGTGLLELGLTNDFALRQWKSG--- 57
Query: 82 FDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREAMWYLEVMEAYKLFYQPLIEDF 141
MYVMVVG + +RT IP++KVHK+VDLS PDREAMWYLEVM+AY+LFY+PLI++F
Sbjct: 58 ----MYVMVVGVYQVRTGQIPLLKVHKMVDLSVSPDREAMWYLEVMDAYRLFYEPLIQEF 113
>gi|255573000|ref|XP_002527430.1| conserved hypothetical protein [Ricinus communis]
gi|223533165|gb|EEF34922.1| conserved hypothetical protein [Ricinus communis]
Length = 103
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 87/111 (78%), Gaps = 8/111 (7%)
Query: 1 MDYSLAALKLLCVQLKDARESPSQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTG 60
MDYSLAALKLLCVQLKDARE+ SQNA+TLGGILFQR WLQG+LV D DG L+LDDGTG
Sbjct: 1 MDYSLAALKLLCVQLKDARETSSQNALTLGGILFQRAWLQGILV-FNDGDGNLILDDGTG 59
Query: 61 VVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVD 111
V+ + LSGDFR+RRW+ G MYVMV+GG+ +RT + P+IK +V
Sbjct: 60 VIHLSLSGDFRLRRWDLG-------MYVMVIGGYFVRTGETPIIKRIHVVS 103
>gi|242038537|ref|XP_002466663.1| hypothetical protein SORBIDRAFT_01g011820 [Sorghum bicolor]
gi|241920517|gb|EER93661.1| hypothetical protein SORBIDRAFT_01g011820 [Sorghum bicolor]
Length = 155
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/152 (48%), Positives = 91/152 (59%), Gaps = 22/152 (14%)
Query: 1 MDYSLAALKLLCVQLKDARESPSQN----AVTLGGILFQRVWLQ-----GVLVS---PPD 48
MDY+LAALK+ QL D E+PS A L GI FQR W+Q GV++S
Sbjct: 1 MDYTLAALKIFSSQLADCTEAPSSEGSSAAQMLNGIRFQRAWIQDSQRQGVILSADYSEA 60
Query: 49 DDGRLLLDDGTGVVQIY-LSGDFRIRRWNTGVFFFDFWMYVMVVGGFVI--RTDDIPVIK 105
DGRLLLDDG+ +V ++ L + W G MYVMV+G ++ D+ P IK
Sbjct: 61 GDGRLLLDDGSCIVDLFVLPREAEGGYWRPG-------MYVMVIGPYIAAESNDNYPAIK 113
Query: 106 VHKIVDLSAFPDREAMWYLEVMEAYKLFYQPL 137
VHKIVDLS+ PDREAMWY+EV EAY LFY P
Sbjct: 114 VHKIVDLSSQPDREAMWYMEVAEAYNLFYLPF 145
>gi|326514860|dbj|BAJ99791.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 161
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 89/144 (61%), Gaps = 16/144 (11%)
Query: 1 MDYSLAALKLLCVQLKDARESPSQN----AVTLGGILFQRVWLQGVLVSP--PDDDGRLL 54
MDYSLAALKL QL + +PS A L GI FQR W+QGV+V DGRL
Sbjct: 15 MDYSLAALKLFASQLAGSTTAPSSEGSSPAQMLFGIRFQRAWIQGVVVRADYSVGDGRLF 74
Query: 55 LDDGTGVVQIYL-SGDFRIRRWNTGVFFFDFWMYVMVVGGFVI--RTDDIPVIKVHKIVD 111
+DDG+ V ++ L D + + W G MYV+++G ++ T+ +P++KVHKIVD
Sbjct: 75 VDDGSCVTELMLRPEDAKGQPWRPG-------MYVLIIGAYIAPQSTESLPMVKVHKIVD 127
Query: 112 LSAFPDREAMWYLEVMEAYKLFYQ 135
LS PDREAMWY+EV EAY FY+
Sbjct: 128 LSTQPDREAMWYMEVSEAYNFFYK 151
>gi|357119042|ref|XP_003561255.1| PREDICTED: uncharacterized protein LOC100821367 [Brachypodium
distachyon]
Length = 152
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 87/144 (60%), Gaps = 16/144 (11%)
Query: 1 MDYSLAALKLLCVQLKDARESPSQNAVT----LGGILFQRVWLQGVLVSP--PDDDGRLL 54
MD++LAALKL QL + +PS + L GI FQR WLQGV+V DG L
Sbjct: 10 MDFTLAALKLFGSQLAGSTTAPSSEGSSPAQMLFGIRFQRAWLQGVIVHADYSTGDGTLS 69
Query: 55 LDDGTGVVQIYL-SGDFRIRRWNTGVFFFDFWMYVMVVGGFVI--RTDDIPVIKVHKIVD 111
LDDG+ V ++ L S + W G MYV ++G ++ ++++P++KVHKIVD
Sbjct: 70 LDDGSCVTELILQSKHAEGQSWRPG-------MYVFIIGAYIAPESSENLPMMKVHKIVD 122
Query: 112 LSAFPDREAMWYLEVMEAYKLFYQ 135
LSA PDREAMWY+EV EAY FY
Sbjct: 123 LSAHPDREAMWYMEVTEAYNFFYS 146
>gi|297722447|ref|NP_001173587.1| Os03g0684300 [Oryza sativa Japonica Group]
gi|13174236|gb|AAK14410.1|AC087851_2 hypothetical protein [Oryza sativa Japonica Group]
gi|108710448|gb|ABF98243.1| OB-fold nucleic acid binding domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|125587500|gb|EAZ28164.1| hypothetical protein OsJ_12138 [Oryza sativa Japonica Group]
gi|215734862|dbj|BAG95584.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674790|dbj|BAH92315.1| Os03g0684300 [Oryza sativa Japonica Group]
Length = 175
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 90/147 (61%), Gaps = 20/147 (13%)
Query: 1 MDYSLAALKLLCVQLKDARESP------SQNAVTLGGILFQRVWLQGVLVSP--PDDDGR 52
MDY+LAALKL QL A E+P + A L GI FQRVWLQGV+V D G
Sbjct: 24 MDYTLAALKLFGCQLAGATEAPPSESDGTSQAQMLYGIRFQRVWLQGVVVLADYRDGAGH 83
Query: 53 LLLDDGTGVVQIYLS-GDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTD----DIPVIKVH 107
+L+DDG+ V +I L+ + + W G MYVMV+G + + + PVIKVH
Sbjct: 84 ILVDDGSCVAEITLTPKEAEGQPWREG-------MYVMVLGSYSGKESLPRANRPVIKVH 136
Query: 108 KIVDLSAFPDREAMWYLEVMEAYKLFY 134
K+VDLSA PDRE+MWY+EV+EA+ FY
Sbjct: 137 KLVDLSAQPDRESMWYMEVVEAFNFFY 163
>gi|117166060|dbj|BAF36361.1| hypothetical protein [Ipomoea trifida]
Length = 160
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 73/111 (65%), Gaps = 13/111 (11%)
Query: 1 MDYSLAALKLLCVQLKDARE--SPSQNAVTLGGILFQRVWLQGVLV---SPPDDDGRLLL 55
MDYSL ALK+LC L A E S SQ A +LGGILFQR WLQGVLV SP +D GR LL
Sbjct: 1 MDYSLGALKILCSHLTTATEATSHSQPAFSLGGILFQRAWLQGVLVSKPSPSNDAGRFLL 60
Query: 56 DDGTGVVQIYLSGDF-RIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIK 105
DDGTGV+++ LSGD+ + W G MYVMVVGG+ +R + IK
Sbjct: 61 DDGTGVIELKLSGDYLQNDAWELG-------MYVMVVGGYAVRKNGTSFIK 104
>gi|293331539|ref|NP_001168765.1| uncharacterized protein LOC100382562 [Zea mays]
gi|223972891|gb|ACN30633.1| unknown [Zea mays]
Length = 121
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 74/117 (63%), Gaps = 15/117 (12%)
Query: 29 LGGILFQRVWLQ--GVLVSPPDDD---GRLLLDDGTGVVQIY-LSGDFRIRRWNTGVFFF 82
L GI FQR W+Q G+++S ++ GRLLLDDG+ V ++ L + R W G
Sbjct: 2 LSGIRFQRAWVQRQGMILSTDYNESGGGRLLLDDGSCVANLFVLPREAEGRFWRPG---- 57
Query: 83 DFWMYVMVVGGFVI--RTDDIPVIKVHKIVDLSAFPDREAMWYLEVMEAYKLFYQPL 137
MYVMV+G ++ D+ P IKVHK+VDLS+ PDREAMWY+EV EAY LFY P
Sbjct: 58 ---MYVMVIGAYIAAESRDNYPSIKVHKMVDLSSQPDREAMWYMEVAEAYSLFYLPF 111
>gi|116780337|gb|ABK21638.1| unknown [Picea sitchensis]
Length = 88
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 61/84 (72%), Gaps = 7/84 (8%)
Query: 1 MDYSLAALKLLCVQLKDARESPSQ------NAVTLGGILFQRVWLQGVLVSPPDDDGRLL 54
MDYSLAA+KL QLK+AR SPS +A+TLG +LFQR WLQGVLV+ + GRL+
Sbjct: 1 MDYSLAAVKLFAAQLKNARPSPSTQITAGGSAMTLGTLLFQRAWLQGVLVAV-TEQGRLI 59
Query: 55 LDDGTGVVQIYLSGDFRIRRWNTG 78
LDDG+ ++++ L DF+ ++W TG
Sbjct: 60 LDDGSSIIELLLPKDFQQQQWKTG 83
>gi|147841152|emb|CAN68546.1| hypothetical protein VITISV_020454 [Vitis vinifera]
Length = 545
Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 16 KDARESPSQNAVTLGGILFQRVWLQGVLVSPPDD-DGRLLLDDGTGVVQIYLSGDFRIRR 74
K A+E SQ A T LFQR WLQG+LVS DD GR +LDDGTG++ + S F R
Sbjct: 466 KKAKERTSQKAFTCSDALFQRAWLQGILVSASDDAQGRFVLDDGTGIIHLPFSDIFFHRN 525
Query: 75 WNTGV 79
W G+
Sbjct: 526 WKVGM 530
>gi|348670419|gb|EGZ10241.1| hypothetical protein PHYSODRAFT_523241 [Phytophthora sojae]
Length = 148
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 14 QLKDARESPSQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGVVQIYLSGDFRIR 73
Q+ A ++ S++ T+ G+ R+W+QGV+V+ +D + +DDGTGV+++ L ++
Sbjct: 19 QIYAALQASSRSTPTINGVDCSRLWVQGVVVATSEDRRQCTIDDGTGVLRLEL--KVFLK 76
Query: 74 RWNTGV-FFFDFWMYVMVVGGF-VIRTDDIPVIKV---HKIVDLSAFPDREAMWYLEVME 128
GV Y+M +G ++ D ++ H++V+L A RE MW+LEV+E
Sbjct: 77 NAPPGVDARPQLGDYIMAIGPMQKMKADAAGSVRTMLAHQVVNLDAKLQREPMWFLEVVE 136
>gi|440799405|gb|ELR20456.1| hypothetical protein ACA1_205950 [Acanthamoeba castellanii str.
Neff]
Length = 150
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 20/113 (17%)
Query: 35 QRVWLQGVLVSPPDDDGR------LLLDDGTGVVQIYLSGDFR----------IRRWNTG 78
+RVW+QGV V+ G +LDDGTG++ I D R +
Sbjct: 36 ERVWVQGVAVASGGLSGGASEVRGFVLDDGTGLLPI----DARKLPPLAPSSSLPSSTPS 91
Query: 79 VFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREAMWYLEVMEAYK 131
YVMV+G R D V+ K+VDLS P+RE+MWYLEV++ +
Sbjct: 92 SMPCPLGAYVMVIGSVGRREDGARVVVAAKLVDLSPDPNRESMWYLEVLDCAQ 144
>gi|412990716|emb|CCO18088.1| unknown protein [Bathycoccus prasinos]
Length = 191
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 31 GILFQRVWLQGVLVSPPDDDGRLLLDDGTGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMV 90
G F+RVW+QG + S ++ L++ DGTG V++ G+ +I + YV
Sbjct: 94 GPHFRRVWIQGEVTSSANNGAVLVVSDGTGSVEVNTDGERKIEK----------GAYVCA 143
Query: 91 VGGFVIRTDDIPVIKVHKIVDLSAFPDREAMWYLEVME 128
+ G++ + + V +I D A RE W +E+ E
Sbjct: 144 M-GWLSKEKKVQATHVMEIKDAKARKSRERAWAMEIRE 180
>gi|260832175|ref|XP_002611033.1| hypothetical protein BRAFLDRAFT_128304 [Branchiostoma floridae]
gi|229296403|gb|EEN67043.1| hypothetical protein BRAFLDRAFT_128304 [Branchiostoma floridae]
Length = 145
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 37 VWLQGVLVSPPDDDGRLLLDDGTGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVI 96
VW+QG +V L +DDG G ++ R FD MYVMVVG +V+
Sbjct: 56 VWVQGTVVDCDIAGDWLTVDDGQGTAKVEQINSIPKAR-----KTFDKGMYVMVVG-YVL 109
Query: 97 RTDDIPVIKVHKIVDLSAFPDREAMWYLEVMEAYK 131
+ PV+K K+ DL+ + + MW LEV + K
Sbjct: 110 QCGTRPVLKAVKVQDLTNHVNHKVMWSLEVTDLQK 144
>gi|332240300|ref|XP_003269326.1| PREDICTED: recQ-mediated genome instability protein 2 [Nomascus
leucogenys]
Length = 147
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 8 LKLLCVQLK-DARESP-----SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGV 61
LK+L QL+ DA SP S+ A G + VW+QG ++ D G L D
Sbjct: 23 LKVLAEQLRRDAEGSPGAWRLSRAAAGRGPLDLAAVWMQGRVIM--ADRGEARLRD---- 76
Query: 62 VQIYLSGDFRIR---RWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDR 118
SGDF +R R G YVMV+G V + P ++ K+ DLS P
Sbjct: 77 ----PSGDFSVRGLERVPRGRPCLVPGKYVMVMG-VVQACNPEPCLQAVKMTDLSDNPIH 131
Query: 119 EAMWYLEVMEAYK 131
E+MW LEV + ++
Sbjct: 132 ESMWELEVEDLHR 144
>gi|325192591|emb|CCA27019.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 141
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 18/130 (13%)
Query: 12 CVQLKDARESPSQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGVVQIYLSGDFR 71
CVQL + G RVW+QG++V + ++DDG+G++ I L
Sbjct: 17 CVQL--------DGNTKVNGKSISRVWIQGIVVWLTSESEECVVDDGSGLILIDLRHFRS 68
Query: 72 IRRWNTG--VFFFDFWMYVMVVGGFV---IRTDDI----PVIKVHKIVDLSAFP-DREAM 121
I+ + + ++WM++ + IR D+ I H++++L+A RE++
Sbjct: 69 IKPSDNAYKISLGEYWMFIGPLRPLTSEQIRLKDVMRMENRILAHQVINLNAMSQQRESL 128
Query: 122 WYLEVMEAYK 131
W+LEV+E ++
Sbjct: 129 WFLEVIEYWR 138
>gi|426381225|ref|XP_004057252.1| PREDICTED: recQ-mediated genome instability protein 2 [Gorilla
gorilla gorilla]
Length = 147
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 61/133 (45%), Gaps = 20/133 (15%)
Query: 8 LKLLCVQLK-DARESP-----SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGV 61
LK+L QL+ DA P S+ AV G + VW+QG +V D G L D
Sbjct: 23 LKVLAEQLRRDAEGGPGAWRLSRAAVGRGPLDLAAVWMQGRVVM--ADRGEARLRD---- 76
Query: 62 VQIYLSGDFRIR---RWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDR 118
SGDF +R R G YVMV+G V P ++ K+ DLS P
Sbjct: 77 ----PSGDFSVRGLERVPRGRPCLVPGKYVMVMG-VVQACSPEPCLQAVKMTDLSDNPIH 131
Query: 119 EAMWYLEVMEAYK 131
E+MW LEV + ++
Sbjct: 132 ESMWELEVEDLHR 144
>gi|302563619|ref|NP_001181222.1| recQ-mediated genome instability protein 2 [Macaca mulatta]
gi|402907657|ref|XP_003916585.1| PREDICTED: recQ-mediated genome instability protein 2 [Papio
anubis]
Length = 147
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 60/133 (45%), Gaps = 20/133 (15%)
Query: 8 LKLLCVQLK-DARESP-----SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGV 61
LK+L QL+ DA P S+ A G + VW+QG +V D G L D
Sbjct: 23 LKVLAEQLRRDAEGGPGAWRLSRAAAGRGPLDLAAVWMQGRVVM--ADRGEARLRD---- 76
Query: 62 VQIYLSGDFRIR---RWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDR 118
SGDF +R R G YVMV+G V P ++ K+ DLS P
Sbjct: 77 ----PSGDFSVRGLERVPRGRPCLVPGKYVMVMG-VVQACSPEPCLQAVKMTDLSDNPIH 131
Query: 119 EAMWYLEVMEAYK 131
E+MW LEV + +K
Sbjct: 132 ESMWELEVEDLHK 144
>gi|403269118|ref|XP_003926603.1| PREDICTED: recQ-mediated genome instability protein 2-like [Saimiri
boliviensis boliviensis]
Length = 147
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 61/130 (46%), Gaps = 14/130 (10%)
Query: 8 LKLLCVQLK-DARESP-----SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGV 61
LK+L QL+ DA P S+ AV G + VW+QG +V D G L D +G
Sbjct: 23 LKVLAEQLRRDAEGGPGAWRLSRAAVGRGPLELAVVWMQGTVVM--ADRGEARLRDPSGA 80
Query: 62 VQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREAM 121
+ G R+ R G YVMV+G V P ++ K+ DLS P E+M
Sbjct: 81 FSVR--GLERVPR---GRPCLVPGKYVMVMG-VVQACSPEPCLQAVKMTDLSDNPIHESM 134
Query: 122 WYLEVMEAYK 131
W LEV + ++
Sbjct: 135 WELEVEDLHR 144
>gi|24308245|ref|NP_689521.1| recQ-mediated genome instability protein 2 [Homo sapiens]
gi|74731517|sp|Q96E14.2|RMI2_HUMAN RecName: Full=RecQ-mediated genome instability protein 2;
Short=hRMI2; AltName: Full=BLM-associated protein of 18
kDa; Short=BLAP18
gi|18490654|gb|AAH22427.1| Chromosome 16 open reading frame 75 [Homo sapiens]
gi|21410236|gb|AAH31016.1| Chromosome 16 open reading frame 75 [Homo sapiens]
gi|38197471|gb|AAH13040.2| Chromosome 16 open reading frame 75 [Homo sapiens]
gi|119605561|gb|EAW85155.1| hypothetical protein MGC24665 [Homo sapiens]
gi|193784805|dbj|BAG53958.1| unnamed protein product [Homo sapiens]
gi|410208710|gb|JAA01574.1| chromosome 16 open reading frame 75 [Pan troglodytes]
gi|410332137|gb|JAA35015.1| chromosome 16 open reading frame 75 [Pan troglodytes]
Length = 147
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 60/133 (45%), Gaps = 20/133 (15%)
Query: 8 LKLLCVQLK-DARESP-----SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGV 61
LK+L QL+ DA P S+ A G + VW+QG +V D G L D
Sbjct: 23 LKVLAEQLRRDAEGGPGAWRLSRAAAGRGPLDLAAVWMQGRVVM--ADRGEARLRD---- 76
Query: 62 VQIYLSGDFRIR---RWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDR 118
SGDF +R R G YVMV+G V P ++ K+ DLS P
Sbjct: 77 ----PSGDFSVRGLERVPRGRPCLVPGKYVMVMG-VVQACSPEPCLQAVKMTDLSDNPIH 131
Query: 119 EAMWYLEVMEAYK 131
E+MW LEV + ++
Sbjct: 132 ESMWELEVEDLHR 144
>gi|428175518|gb|EKX44407.1| hypothetical protein GUITHDRAFT_109528 [Guillardia theta CCMP2712]
Length = 125
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%)
Query: 54 LLDDGTGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLS 113
++DDG+GVV I + +++ + MYVM G D + KI DLS
Sbjct: 41 MVDDGSGVVSIDCTELYKVYDKYKDTWRLAKGMYVMAQGILSKDADQRLHVICTKIADLS 100
Query: 114 AFPDREAMWYLEVMEAYKLFYQPL 137
A PDR AMW EV++A + Q L
Sbjct: 101 ANPDRFAMWMCEVVDADRFKDQLL 124
>gi|306991753|pdb|3MXN|B Chain B, Crystal Structure Of The Rmi Core Complex
gi|380259209|pdb|4DAY|B Chain B, Crystal Structure Of The Rmi Core Complex With Mm2 Peptide
From Fancm
Length = 150
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 60/133 (45%), Gaps = 20/133 (15%)
Query: 8 LKLLCVQLK-DARESP-----SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGV 61
LK+L QL+ DA P S+ A G + VW+QG +V D G L D
Sbjct: 26 LKVLAEQLRRDAEGGPGAWRLSRAAAGRGPLDLAAVWMQGRVVM--ADRGEARLRD---- 79
Query: 62 VQIYLSGDFRIR---RWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDR 118
SGDF +R R G YVMV+G V P ++ K+ DLS P
Sbjct: 80 ----PSGDFSVRGLERVPRGRPCLVPGKYVMVMG-VVQACSPEPCLQAVKMTDLSDNPIH 134
Query: 119 EAMWYLEVMEAYK 131
E+MW LEV + ++
Sbjct: 135 ESMWELEVEDLHR 147
>gi|348584088|ref|XP_003477804.1| PREDICTED: recQ-mediated genome instability protein 2-like [Cavia
porcellus]
Length = 147
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Query: 8 LKLLCVQLK-DARESP-----SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGV 61
LK+L QL+ D +P S+ A L + VW+QG LV+ + RL G+
Sbjct: 23 LKVLAKQLRCDVEGAPGAWRLSRAAAGLRPLELAAVWMQGTLVAAGSGEARLRDPSGS-- 80
Query: 62 VQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREAM 121
+ G R+ R G YVMV+G V P ++ KI DLS P E+M
Sbjct: 81 --FSVCGLERVPR---GRPCLVPGKYVMVMG-VVQACSPEPCLQAVKITDLSDNPIHESM 134
Query: 122 WYLEVMEAYK 131
W LEV + ++
Sbjct: 135 WELEVEDLHR 144
>gi|302796290|ref|XP_002979907.1| hypothetical protein SELMODRAFT_112012 [Selaginella moellendorffii]
gi|300152134|gb|EFJ18777.1| hypothetical protein SELMODRAFT_112012 [Selaginella moellendorffii]
Length = 90
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 103 VIKVHKIVDLSAFPDREAMWYLEVMEAYKLFYQPLIED 140
V +VHK+VDLS+ P+ E+ W EV+EAY +FY+ +++
Sbjct: 51 VFQVHKLVDLSSSPNAESFWSFEVIEAYHMFYKSQMDE 88
>gi|156378322|ref|XP_001631092.1| predicted protein [Nematostella vectensis]
gi|156218126|gb|EDO39029.1| predicted protein [Nematostella vectensis]
Length = 150
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 67/139 (48%), Gaps = 19/139 (13%)
Query: 4 SLAALKLL------CVQLKDARESPSQNAVTLG-----GILFQRVWLQGVLVSPPDDDGR 52
S+ A+KL C Q+ D SP V G G+ +VWLQG +V DD+
Sbjct: 12 SMPAIKLFVNQVQHCQQVSDRGSSPLYEWVCCGISGQEGLGLSQVWLQGYIVKLFDDNND 71
Query: 53 LLLDDGTGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDI--PVIKVHKIV 110
LLDDGTGV I +G ++ + F MYVM+ G + P+++V KI
Sbjct: 72 FLLDDGTGVAHI--TGVNKLVK----NVLFKEGMYVMIAGQLKTLLSSVGHPLVRVLKIS 125
Query: 111 DLSAFPDREAMWYLEVMEA 129
DL+ E W LEV+++
Sbjct: 126 DLTKSSLAEPHWILEVIDS 144
>gi|297715254|ref|XP_002834003.1| PREDICTED: recQ-mediated genome instability protein 2-like [Pongo
abelii]
Length = 147
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 60/133 (45%), Gaps = 20/133 (15%)
Query: 8 LKLLCVQLK-DARESP-----SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGV 61
LK+L QL+ DA P S+ A G + VW+QG +V D G L D
Sbjct: 23 LKVLAEQLRRDAEGGPGAWRLSRAAAGRGPLDLVSVWMQGRVVM--ADRGEARLRD---- 76
Query: 62 VQIYLSGDFRIR---RWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDR 118
SGDF +R R G YVMV+G V P ++ K+ DLS P
Sbjct: 77 ----PSGDFSVRGLERVPRGRPCLVPGKYVMVMG-VVQACSPEPCLQAVKMTDLSDNPIH 131
Query: 119 EAMWYLEVMEAYK 131
E+MW LEV + ++
Sbjct: 132 ESMWELEVEDLHR 144
>gi|153792255|ref|NP_001093190.1| recQ-mediated genome instability protein 2 [Bos taurus]
gi|156630489|sp|A5PJU7.1|RMI2_BOVIN RecName: Full=RecQ-mediated genome instability protein 2
gi|148744935|gb|AAI42246.1| C25H16ORF75 protein [Bos taurus]
Length = 157
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 22/138 (15%)
Query: 8 LKLLCVQLK-DARESP-----SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGV 61
+K+L QL+ DA P S+ AV + + VW+QG +V + G GV
Sbjct: 24 IKVLAEQLRRDAEGGPGSWRLSRAAVGREPLELRAVWMQGTVV-----------EAGGGV 72
Query: 62 VQIY-LSGDFRIR---RWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPD 117
++ SG F +R R G YVMV+G + P ++ K+ DLS P
Sbjct: 73 ARLRDPSGSFSVRGLERVPRGRPCLVPGKYVMVMG-VIQACSPEPCLQAVKMTDLSDNPL 131
Query: 118 REAMWYLEVMEAYKLFYQ 135
E++W LEV + ++ Y
Sbjct: 132 HESLWELEVEDLHRHIYS 149
>gi|57525121|ref|NP_001006174.1| recQ-mediated genome instability protein 2 [Gallus gallus]
gi|75571438|sp|Q5ZM20.1|RMI2_CHICK RecName: Full=RecQ-mediated genome instability protein 2
gi|53127788|emb|CAG31223.1| hypothetical protein RCJMB04_3g8 [Gallus gallus]
Length = 137
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 8 LKLLCVQLKDARESP------SQNAVTLGGILFQRVWLQG-VLVSPPDDDGRLLLDDGTG 60
LK+L QL+ A S+ + + VW+QG VL G L DG+G
Sbjct: 10 LKVLAAQLRAAGRGAGGTWRLSRTETGRAPLCLRAVWMQGTVLQVERGGGGSARLRDGSG 69
Query: 61 VVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREA 120
+ D G YVMV+G V PV++ K+ DLS P E
Sbjct: 70 HFTVLGVEDV-----PRGRPCLSAGKYVMVMG-MVRACSPEPVLRAIKMTDLSENPVHEE 123
Query: 121 MWYLEVMEAYKLF 133
MW LEV E +++
Sbjct: 124 MWGLEVEELHRVI 136
>gi|296212329|ref|XP_002752778.1| PREDICTED: recQ-mediated genome instability protein 2-like
[Callithrix jacchus]
Length = 147
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Query: 8 LKLLCVQLK-DARESP-----SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGV 61
LK+L QL+ DA P S+ A G + VW+QG ++ D G L D +G
Sbjct: 23 LKVLAEQLRRDAEGGPGAWRLSRAAAGRGPLALAVVWMQGTVMM--ADRGEARLRDPSGA 80
Query: 62 VQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREAM 121
+ G R+ R G YVMV+G V P ++ K+ DLS P E+M
Sbjct: 81 FSVR--GLERVPR---GRPCLVPGKYVMVMG-VVQACSPEPCLQAVKMTDLSDNPIHESM 134
Query: 122 WYLEVMEAYK 131
W LEV + ++
Sbjct: 135 WELEVEDLHR 144
>gi|62655636|ref|XP_573037.1| PREDICTED: recQ-mediated genome instability protein 2-like [Rattus
norvegicus]
gi|109489661|ref|XP_001078307.1| PREDICTED: recQ-mediated genome instability protein 2-like [Rattus
norvegicus]
Length = 149
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 14/130 (10%)
Query: 8 LKLLCVQLKDARESP------SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGV 61
LK+L QL+ E S+ AV + VW+QG +++ + G+ L D +G
Sbjct: 25 LKVLAEQLRQHAEGGPGAWRLSRAAVGRTPLELAAVWMQGTVLA--AEGGQARLRDPSGT 82
Query: 62 VQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREAM 121
+ G R+ R +F YVMV+G V P ++ K+ DLS P E+M
Sbjct: 83 FSVR--GLERVPRGRPCLFPGK---YVMVMG-VVQACSPEPCLQAVKMTDLSNNPVHESM 136
Query: 122 WYLEVMEAYK 131
W LEV + ++
Sbjct: 137 WELEVEDLHR 146
>gi|301113932|ref|XP_002998736.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262112037|gb|EEY70089.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 105
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 39 LQGVLVSPPDDDGRLLLDDGTGVVQIYLSGDFRIRRWNTGV-FFFDFWMYVMVVGGFVIR 97
+QG++V+ D + +DDGTGV+ + L ++ GV Y+M +G +
Sbjct: 1 MQGIVVATSKDQKQCTVDDGTGVLHLELK--VFLKNAPPGVDARPQLGDYIMAIGPMLKT 58
Query: 98 TDDIPV----IKVHKIVDLSAFPDREAMWYLEVMEAYKLFY 134
D V + H++V L RE MW+LEV+E + Y
Sbjct: 59 KTDTAVSTRTLVAHQVVKLDTKLQREPMWFLEVIEYWTSLY 99
>gi|226372160|gb|ACO51705.1| OB DNA-binding domain-containing protein C16orf175 homolog [Rana
catesbeiana]
Length = 149
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 3 YSLAALKLLCVQLKDARE----SPSQNAVTLGGILFQ--RVWLQGVLVS-PPDDDGRLLL 55
+S +K+L QLK+ ++ SPS G+ + VW+QG ++ + D L L
Sbjct: 15 FSCPPMKMLAAQLKECKKRLGASPSFWLEMRSGVEAEVSLVWMQGRVIEVRQERDVSLRL 74
Query: 56 DDGTGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAF 115
D T + F R G + YVM +G V+ + PV++ KI DLS
Sbjct: 75 TDDTHTFTV-----FGADRAPKGKPCLEQGKYVMAMG-IVLSCNPEPVLRAVKITDLSDN 128
Query: 116 PDREAMWYLEVMEAYK 131
P + MW EV + +K
Sbjct: 129 PVHQGMWKFEVDDLHK 144
>gi|345801890|ref|XP_852348.2| PREDICTED: recQ-mediated genome instability protein 2 [Canis lupus
familiaris]
Length = 156
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 8 LKLLCVQLK-DARESP-----SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGV 61
LK+L QL+ DA P S+ A G + VW+QG +V+ G L D +G
Sbjct: 32 LKVLAEQLRRDAEGGPGAWRLSRAATGRGPLELVTVWMQGTVVT--AGGGEARLRDPSGA 89
Query: 62 VQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREAM 121
+ G R+ R G YVMV+G + + + P ++ K+ DLS P E M
Sbjct: 90 FSVR--GLERVPR---GRPCLVPGKYVMVMGVVQVCSPE-PCLQAVKMTDLSDNPVHENM 143
Query: 122 WYLEVMEAYKLF 133
W LEV + +++
Sbjct: 144 WELEVEDLHRII 155
>gi|296473502|tpg|DAA15617.1| TPA: recQ-mediated genome instability protein 2 [Bos taurus]
Length = 157
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 22/138 (15%)
Query: 8 LKLLCVQLK-DARESP-----SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGV 61
+K+L QL+ DA P S+ AV + + VW+QG +V + G G
Sbjct: 24 IKVLAEQLRRDAEGGPGSWRLSRAAVGREPLELRAVWMQGTVV-----------EAGGGE 72
Query: 62 VQIY-LSGDFRIR---RWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPD 117
++ SG F +R R G YVMV+G + P ++ K+ DLS P
Sbjct: 73 ARLRDPSGSFSVRGLERVPRGRPCLVPGKYVMVMG-VIQACSPEPCLQAVKMTDLSDNPL 131
Query: 118 REAMWYLEVMEAYKLFYQ 135
E++W LEV + ++ Y
Sbjct: 132 HESLWELEVEDLHRHIYS 149
>gi|395857099|ref|XP_003800949.1| PREDICTED: recQ-mediated genome instability protein 2 [Otolemur
garnettii]
Length = 148
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 8 LKLLCVQLK-DARESP-----SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGV 61
LK+L L+ D P S+ A G + VW+QG +V+ D + RL D TG
Sbjct: 24 LKVLAEHLRRDTEGGPGAWQLSRAAAGRGPLELVAVWMQGTVVAAGDGEARLW--DPTGA 81
Query: 62 VQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREAM 121
+ G R+ R G YVMV+G V+ P + K+ DLS P E M
Sbjct: 82 FSVR--GLDRVPR---GRPCVTPGKYVMVMG-VVLACSPEPCLLAVKMTDLSDNPIHERM 135
Query: 122 WYLEVMEAYK 131
W LEV + ++
Sbjct: 136 WALEVEDLHR 145
>gi|242397460|ref|NP_001156404.1| recQ-mediated genome instability protein 2 [Mus musculus]
gi|123791629|sp|Q3UPE3.1|RMI2_MOUSE RecName: Full=RecQ-mediated genome instability protein 2
gi|74146948|dbj|BAE25452.1| unnamed protein product [Mus musculus]
Length = 149
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 5 LAALKLLCVQLK-DARESP-----SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDG 58
L LK+L QL+ A P S+ AV + VW+QG +++ + G+ L D
Sbjct: 22 LPPLKVLAGQLRRHAEGGPGAWRLSRAAVGRAPLELVAVWMQGTVLA--AEGGQARLRDS 79
Query: 59 TGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDR 118
+G + G R+ R + YVMV+G V P ++ K+ DLS P
Sbjct: 80 SGAFSVR--GLERVPRGRPCLLPGK---YVMVMG-VVQACSPEPCLQAVKMTDLSDNPVH 133
Query: 119 EAMWYLEVMEAYK 131
E+MW LEV + ++
Sbjct: 134 ESMWELEVEDLHR 146
>gi|291390599|ref|XP_002711796.1| PREDICTED: recQ-mediated genome instability protein 2-like
[Oryctolagus cuniculus]
Length = 148
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Query: 8 LKLLCVQLK-DARESP-----SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGV 61
+K+L QL+ DA P S+ A G + VW+QG ++S G L D TG
Sbjct: 24 VKVLAEQLRRDAAGGPGAWRLSRAAAGRGPLELAAVWMQGTVMS--ASGGEAQLRDPTG- 80
Query: 62 VQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREAM 121
++ G R+ R G YVMV+G V P ++ K+ DLS E+M
Sbjct: 81 -SFWVRGLERVPR---GRPCLVPGKYVMVMG-VVQACSPEPCLQAVKMTDLSDNALHESM 135
Query: 122 WYLEVMEAYK 131
W LEV + ++
Sbjct: 136 WELEVEDLHR 145
>gi|344291901|ref|XP_003417667.1| PREDICTED: recQ-mediated genome instability protein 2-like
[Loxodonta africana]
Length = 244
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
Query: 37 VWLQGVLVSPPDDDGRLLLDDGTGVVQIY-LSGDFRIR---RWNTGVFFFDFWMYVMVVG 92
VW+QG +V + G G ++ SG F +R R G YVMV+G
Sbjct: 155 VWMQGTVV-----------EAGGGEARLRDPSGSFEVRGLERVPRGRPCLAPGKYVMVMG 203
Query: 93 GFVIRTDDIPVIKVHKIVDLSAFPDREAMWYLEVMEAYK 131
V P ++ K+ DLS P E+MW LEV + ++
Sbjct: 204 -VVQSCSPEPCLQAVKMTDLSDNPIHESMWELEVEDLHR 241
>gi|114661041|ref|XP_001139380.1| PREDICTED: recQ-mediated genome instability protein 2 [Pan
troglodytes]
Length = 154
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 30 GGILFQRVWLQGVLVSPPDDDGRLLLDDGTGVVQIYLSGDFRIR---RWNTGVFFFDFWM 86
G + + VW+QG +V D G L D SGDF +R R G
Sbjct: 58 GPLDLRAVWMQGRVVM--ADRGEARLRD--------PSGDFSVRGLERVPRGRPCLVPGK 107
Query: 87 YVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREAMWYLEVMEAYK 131
YVMV+G V P ++ K+ DLS P E+MW LEV + ++
Sbjct: 108 YVMVMG-VVQACSPEPCLQAVKMTDLSDNPIHESMWELEVEDLHR 151
>gi|397473765|ref|XP_003808371.1| PREDICTED: recQ-mediated genome instability protein 2 [Pan
paniscus]
Length = 126
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 37 VWLQGVLVSPPDDDGRLLLDDGTGVVQIYLSGDFRIR---RWNTGVFFFDFWMYVMVVGG 93
VW+QG +V D G L D SGDF +R R G YVMV+G
Sbjct: 37 VWMQGRVVM--ADRGEARLRD--------PSGDFSVRGLERVPRGRPCLVPGKYVMVMG- 85
Query: 94 FVIRTDDIPVIKVHKIVDLSAFPDREAMWYLEVMEAYK 131
V P ++ K+ DLS P E+MW LEV + ++
Sbjct: 86 VVQACSPEPCLQAVKMTDLSDNPIHESMWELEVEDLHR 123
>gi|126334909|ref|XP_001376272.1| PREDICTED: recQ-mediated genome instability protein 2-like
[Monodelphis domestica]
Length = 154
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 37 VWLQGVLVSPPDDDGRLLLDDGTGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVI 96
VW+QG ++ + L D +GV + + R G YVM++G VI
Sbjct: 63 VWMQGRVLEAAEKGSWARLRDPSGVFTVQ-----GLERVPQGKPCLAPGKYVMIMG--VI 115
Query: 97 RT-DDIPVIKVHKIVDLSAFPDREAMWYLEVMEAYK 131
+T + P ++ K+ DLS P E+MW LEV + ++
Sbjct: 116 QTCNPEPCLQAVKMTDLSENPIHESMWELEVEDLHR 151
>gi|196008787|ref|XP_002114259.1| hypothetical protein TRIADDRAFT_57881 [Trichoplax adhaerens]
gi|190583278|gb|EDV23349.1| hypothetical protein TRIADDRAFT_57881 [Trichoplax adhaerens]
Length = 130
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 87 YVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREAMWYLEVMEAYKLFYQP 136
YVM +G + T D +I+ K+ DLS+ PD +W E ++ ++ ++P
Sbjct: 79 YVMAIGEILHITKDQVIIRALKMADLSSNPDTMTIWLYETIDLHQTIFEP 128
>gi|298706714|emb|CBJ29663.1| hypothetical protein Esi_0156_0014 [Ectocarpus siliculosus]
Length = 178
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 2 DYSLAALKLLCVQLKDARESPSQNAVT-----------LGGILFQRVWLQGVLVSPPDDD 50
D + A+KL QL AR+ VT L GI F RVW+QG+++ +
Sbjct: 5 DRKIPAVKLFVSQLNSARQPVEAADVTGLEESNLVGLVLMGIEFTRVWVQGIVIEVNPAE 64
Query: 51 GRLLLDDGTGVVQIYLSG 68
++DD TG V + G
Sbjct: 65 RSFIVDDNTGTVTAVVPG 82
>gi|47220078|emb|CAG12226.1| unnamed protein product [Tetraodon nigroviridis]
Length = 136
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 37 VWLQGVLVSPPDDDGRLLLDDGTGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVI 96
VW+QG ++ D LLL D TG + ++ G YVMV+G
Sbjct: 46 VWMQGTVLEVQLDGDSLLLMDETGTFTVQ-----GVKSVPKGKPCLSEGKYVMVMGVIQA 100
Query: 97 RTDDIPVIKVHKIVDLSAFPD-REAMWYLEVME 128
+ + P+I+ K+ DLS MW LEV E
Sbjct: 101 ASPE-PLIRAVKMADLSQLAALHRRMWKLEVEE 132
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.328 0.146 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,475,219,868
Number of Sequences: 23463169
Number of extensions: 106150095
Number of successful extensions: 219371
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 219279
Number of HSP's gapped (non-prelim): 55
length of query: 142
length of database: 8,064,228,071
effective HSP length: 106
effective length of query: 36
effective length of database: 9,872,099,453
effective search space: 355395580308
effective search space used: 355395580308
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 71 (32.0 bits)