BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044496
         (142 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q96E14|RMI2_HUMAN RecQ-mediated genome instability protein 2 OS=Homo sapiens GN=RMI2
           PE=1 SV=2
          Length = 147

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 60/133 (45%), Gaps = 20/133 (15%)

Query: 8   LKLLCVQLK-DARESP-----SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGV 61
           LK+L  QL+ DA   P     S+ A   G +    VW+QG +V    D G   L D    
Sbjct: 23  LKVLAEQLRRDAEGGPGAWRLSRAAAGRGPLDLAAVWMQGRVVM--ADRGEARLRD---- 76

Query: 62  VQIYLSGDFRIR---RWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDR 118
                SGDF +R   R   G        YVMV+G  V      P ++  K+ DLS  P  
Sbjct: 77  ----PSGDFSVRGLERVPRGRPCLVPGKYVMVMG-VVQACSPEPCLQAVKMTDLSDNPIH 131

Query: 119 EAMWYLEVMEAYK 131
           E+MW LEV + ++
Sbjct: 132 ESMWELEVEDLHR 144


>sp|A5PJU7|RMI2_BOVIN RecQ-mediated genome instability protein 2 OS=Bos taurus GN=RMI2
           PE=2 SV=1
          Length = 157

 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 22/138 (15%)

Query: 8   LKLLCVQLK-DARESP-----SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGV 61
           +K+L  QL+ DA   P     S+ AV    +  + VW+QG +V           + G GV
Sbjct: 24  IKVLAEQLRRDAEGGPGSWRLSRAAVGREPLELRAVWMQGTVV-----------EAGGGV 72

Query: 62  VQIY-LSGDFRIR---RWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPD 117
            ++   SG F +R   R   G        YVMV+G  +      P ++  K+ DLS  P 
Sbjct: 73  ARLRDPSGSFSVRGLERVPRGRPCLVPGKYVMVMG-VIQACSPEPCLQAVKMTDLSDNPL 131

Query: 118 REAMWYLEVMEAYKLFYQ 135
            E++W LEV + ++  Y 
Sbjct: 132 HESLWELEVEDLHRHIYS 149


>sp|Q5ZM20|RMI2_CHICK RecQ-mediated genome instability protein 2 OS=Gallus gallus GN=RMI2
           PE=2 SV=1
          Length = 137

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 13/133 (9%)

Query: 8   LKLLCVQLKDARESP------SQNAVTLGGILFQRVWLQG-VLVSPPDDDGRLLLDDGTG 60
           LK+L  QL+ A          S+       +  + VW+QG VL       G   L DG+G
Sbjct: 10  LKVLAAQLRAAGRGAGGTWRLSRTETGRAPLCLRAVWMQGTVLQVERGGGGSARLRDGSG 69

Query: 61  VVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREA 120
              +    D        G        YVMV+G  V      PV++  K+ DLS  P  E 
Sbjct: 70  HFTVLGVEDV-----PRGRPCLSAGKYVMVMG-MVRACSPEPVLRAIKMTDLSENPVHEE 123

Query: 121 MWYLEVMEAYKLF 133
           MW LEV E +++ 
Sbjct: 124 MWGLEVEELHRVI 136


>sp|Q3UPE3|RMI2_MOUSE RecQ-mediated genome instability protein 2 OS=Mus musculus GN=Rmi2
           PE=2 SV=1
          Length = 149

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 14/133 (10%)

Query: 5   LAALKLLCVQLK-DARESP-----SQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDG 58
           L  LK+L  QL+  A   P     S+ AV    +    VW+QG +++   + G+  L D 
Sbjct: 22  LPPLKVLAGQLRRHAEGGPGAWRLSRAAVGRAPLELVAVWMQGTVLA--AEGGQARLRDS 79

Query: 59  TGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDR 118
           +G   +   G  R+ R    +       YVMV+G  V      P ++  K+ DLS  P  
Sbjct: 80  SGAFSVR--GLERVPRGRPCLLPGK---YVMVMG-VVQACSPEPCLQAVKMTDLSDNPVH 133

Query: 119 EAMWYLEVMEAYK 131
           E+MW LEV + ++
Sbjct: 134 ESMWELEVEDLHR 146


>sp|Q55GH9|GEFW_DICDI Ras guanine nucleotide exchange factor W OS=Dictyostelium
           discoideum GN=gefW PE=2 SV=1
          Length = 1172

 Score = 30.8 bits (68), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 71  RIRRWNTGVFFFDFWMYVMVVG-GFVIRTDDI 101
           RIRRW T V   + W+ +M++   FV+  DDI
Sbjct: 273 RIRRWMTWVISSNIWLTIMIISIIFVLFIDDI 304


>sp|A3DE67|MUTS2_CLOTH MutS2 protein OS=Clostridium thermocellum (strain ATCC 27405 / DSM
           1237) GN=mutS2 PE=3 SV=1
          Length = 793

 Score = 30.8 bits (68), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 28/52 (53%)

Query: 16  KDARESPSQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGVVQIYLS 67
           K+A   P +N      +L   +  +G +++PPD DG +++  G   + +++S
Sbjct: 635 KNALVKPPENLKPGDSVLIVNLDQKGTVITPPDKDGEVVVQAGIMKINVHIS 686


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.146    0.460 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,241,422
Number of Sequences: 539616
Number of extensions: 2419564
Number of successful extensions: 5027
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5023
Number of HSP's gapped (non-prelim): 7
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)