Query 044496
Match_columns 142
No_of_seqs 72 out of 74
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 06:04:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mxn_B RECQ-mediated genome in 100.0 2.3E-45 7.9E-50 284.8 9.1 121 3-133 21-149 (150)
2 3kdf_D Replication protein A 3 99.5 1.2E-12 4.2E-17 96.5 13.0 115 11-136 10-132 (132)
3 4gop_B Putative uncharacterize 99.5 9E-13 3.1E-17 97.6 12.2 114 11-133 13-134 (136)
4 2pi2_A Replication protein A 3 99.2 1.9E-10 6.6E-15 93.8 11.7 116 9-135 48-171 (270)
5 3kf6_A Protein STN1; OB fold, 98.7 1.2E-07 4.1E-12 73.2 11.5 118 8-136 19-148 (159)
6 1nnx_A Protein YGIW; structura 97.7 0.00025 8.5E-09 52.0 9.2 72 32-112 35-107 (109)
7 3kf8_A Protein STN1; OB fold; 96.6 0.018 6.1E-07 46.8 10.4 103 7-117 49-187 (220)
8 3kdf_A Replication protein A 1 96.5 0.024 8.1E-07 41.7 9.7 67 35-115 23-90 (121)
9 2pi2_E Replication protein A 1 96.5 0.023 7.8E-07 43.1 9.6 67 35-115 44-111 (142)
10 2k50_A Replication factor A re 95.8 0.035 1.2E-06 38.8 7.1 76 36-118 18-108 (115)
11 3dm3_A Replication factor A; p 95.4 0.32 1.1E-05 34.3 11.1 72 35-114 15-99 (105)
12 1n9w_A Aspartyl-tRNA synthetas 95.2 0.13 4.6E-06 44.3 10.0 69 36-115 15-88 (422)
13 4gop_A Putative uncharacterize 95.1 0.097 3.3E-06 37.9 7.7 70 35-117 19-92 (114)
14 3e0e_A Replication protein A; 94.9 0.44 1.5E-05 32.8 10.4 67 35-110 12-91 (97)
15 2kbn_A Conserved protein; nucl 94.7 0.27 9.2E-06 34.7 8.9 70 35-112 16-91 (109)
16 3m4p_A Ehasnrs, asparaginyl-tR 94.6 0.2 7E-06 43.7 9.7 75 35-116 31-123 (456)
17 1e1o_A Lysyl-tRNA synthetase, 94.6 0.2 7E-06 44.3 9.7 74 35-115 65-148 (504)
18 3bju_A Lysyl-tRNA synthetase; 94.4 0.17 5.8E-06 44.9 8.8 74 35-115 56-141 (521)
19 1wyd_A Hypothetical aspartyl-t 94.4 0.26 9E-06 42.5 9.7 74 35-115 17-98 (429)
20 1eov_A ASPRS, aspartyl-tRNA sy 94.3 0.24 8.3E-06 43.4 9.6 74 35-115 37-130 (487)
21 3nem_A Aspartyl-tRNA synthetas 94.3 0.24 8.2E-06 43.0 9.3 74 35-115 17-101 (438)
22 1l0w_A Aspartyl-tRNA synthetas 94.1 0.29 1E-05 44.0 9.7 74 35-115 17-103 (580)
23 2xgt_A Asparaginyl-tRNA synthe 93.9 0.36 1.2E-05 41.6 9.7 72 36-114 13-96 (435)
24 4ex5_A Lysine--tRNA ligase; st 93.9 0.22 7.4E-06 44.6 8.5 74 35-115 87-169 (529)
25 3a74_A Lysyl-tRNA synthetase; 93.4 0.24 8.4E-06 43.6 7.9 74 35-115 57-139 (493)
26 1c0a_A Aspartyl tRNA synthetas 93.4 0.46 1.6E-05 42.6 9.7 73 36-115 17-105 (585)
27 3i7f_A Aspartyl-tRNA synthetas 93.0 0.62 2.1E-05 41.9 10.0 74 35-115 63-153 (548)
28 2k75_A Uncharacterized protein 92.8 0.8 2.7E-05 32.1 8.4 62 37-109 16-87 (106)
29 1x54_A Asparaginyl-tRNA synthe 92.5 0.44 1.5E-05 41.2 8.1 74 35-115 17-101 (434)
30 3au7_A TIAS, putative uncharac 92.2 0.48 1.6E-05 41.3 7.9 67 32-110 282-357 (402)
31 4ah6_A Aspartate--tRNA ligase, 87.1 2.2 7.5E-05 38.9 8.3 73 35-115 25-113 (617)
32 3e0j_A DNA polymerase subunit 85.8 5.6 0.00019 35.2 10.0 38 49-95 136-173 (476)
33 1o7i_A SSB, SSO2364, single st 85.7 3 0.0001 29.3 6.9 48 52-108 41-89 (119)
34 2hpi_A DNA polymerase III alph 85.2 1.4 4.8E-05 43.2 6.3 71 35-114 1043-1123(1220)
35 1sr3_A APO-CCME; OB fold, beta 77.8 6.4 0.00022 29.5 6.4 54 35-96 29-88 (136)
36 1j6q_A Cytochrome C maturation 77.4 17 0.00057 27.2 8.5 63 35-109 33-102 (136)
37 3d3r_A Hydrogenase assembly ch 73.3 15 0.0005 26.4 7.0 47 39-95 26-73 (103)
38 2z1c_A Hydrogenase expression/ 70.9 9.5 0.00033 25.8 5.3 44 40-95 6-49 (75)
39 2qcp_X Cation efflux system pr 68.0 22 0.00076 23.7 6.7 64 35-108 6-77 (80)
40 2vb2_X Copper protein, cation 66.2 24 0.00082 24.0 6.7 64 35-108 14-85 (88)
41 1wjj_A Hypothetical protein F2 65.4 28 0.00095 26.0 7.4 49 52-108 65-113 (145)
42 1ah9_A IF1, initiation factor 61.3 13 0.00043 24.1 4.3 44 39-90 8-54 (71)
43 3kf6_B Protein TEN1; OB fold, 59.1 48 0.0016 24.0 7.7 80 6-111 6-85 (105)
44 2ot2_A Hydrogenase isoenzymes 57.9 30 0.001 24.1 6.0 48 39-95 5-55 (90)
45 1ynx_A Replication factor-A pr 55.2 16 0.00054 25.4 4.2 54 36-96 16-83 (114)
46 2kct_A Cytochrome C-type bioge 54.3 52 0.0018 22.9 9.3 64 35-109 9-81 (94)
47 1jmc_A Protein (replication pr 50.8 21 0.00071 27.3 4.6 53 35-94 19-85 (246)
48 3i4o_A Translation initiation 44.7 43 0.0015 22.7 4.9 45 38-90 15-62 (79)
49 3f2b_A DNA-directed DNA polyme 40.2 1E+02 0.0035 29.9 8.4 71 33-110 16-99 (1041)
50 1jmc_A Protein (replication pr 36.5 62 0.0021 24.5 5.3 74 37-118 141-229 (246)
51 2dgy_A MGC11102 protein; EIF-1 35.4 1.2E+02 0.004 21.7 6.3 45 39-91 17-63 (111)
52 2isb_A Fumarase, FUM-1; NP_069 31.5 4 0.00014 32.5 -2.3 41 86-128 134-174 (192)
53 1gm5_A RECG; helicase, replica 31.2 17 0.00057 33.5 1.4 54 36-96 167-229 (780)
54 1hr0_W Translation initiation 31.1 12 0.00041 24.4 0.3 43 39-90 9-55 (71)
55 1jt8_A EIF-1A, probable transl 27.5 81 0.0028 22.2 4.2 45 39-91 22-68 (102)
56 1wyj_A Protocadherin beta 14; 25.9 52 0.0018 23.0 3.0 59 49-116 53-112 (125)
57 1d7q_A Translation initiation 25.9 2.1E+02 0.0071 21.4 6.5 45 39-91 33-79 (143)
58 1wuz_A Pcdha4 protein, CNR-EC1 25.7 1.5E+02 0.0051 19.7 5.9 58 49-115 45-103 (103)
59 1c8c_A DNA-binding protein 7A; 24.5 32 0.0011 22.7 1.5 25 34-65 20-47 (64)
60 2oqk_A Putative translation in 23.0 93 0.0032 22.1 3.9 45 39-91 34-80 (117)
61 2asb_A Transcription elongatio 21.0 2.4E+02 0.0081 22.9 6.4 77 39-131 11-98 (251)
62 3mxn_A RECQ-mediated genome in 20.4 1.8E+02 0.0062 22.1 5.2 35 34-68 37-79 (157)
63 3hfo_A SSR3341 protein; HFQ, S 20.3 2E+02 0.0068 19.1 5.0 55 2-66 5-60 (70)
No 1
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=100.00 E-value=2.3e-45 Score=284.80 Aligned_cols=121 Identities=31% Similarity=0.381 Sum_probs=109.5
Q ss_pred ccchHHHHHHHHHhhccCCCCCCc------eeecCeEEeEEEEEEEEEeeeCCCCcEEEEcCCeeEEEEe-cccccccc-
Q 044496 3 YSLAALKLLCVQLKDARESPSQNA------VTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGVVQIYL-SGDFRIRR- 74 (142)
Q Consensus 3 ~~~pa~Kvf~~QL~~a~~~~s~~~------~~l~gl~~~~VWlQG~vv~~~~~~~~~~LdDgTG~~~v~~-~~~~~~~~- 74 (142)
.+-||+|+|++||++|++.+...+ ....++++++|||||+||++ ++|+++||||||+|++.+ +++|++++
T Consensus 21 ~~~PpvK~l~~QLr~~~~~~~~~w~l~r~~~g~~~l~~s~VWmQG~VV~~--~~g~~~LdDgTG~~~v~g~~~vp~g~p~ 98 (150)
T 3mxn_B 21 PRSPPLKVLAEQLRRDAEGGPGAWRLSRAAAGRGPLDLAAVWMQGRVVMA--DRGEARLRDPSGDFSVRGLERVPRGRPC 98 (150)
T ss_dssp CSSCCEECCHHHHHHHEESCTTCCEECCTTTTCCCEECSEEEEEEEEEEE--ETTEEEEEETTEEEEEECGGGSCCCSCC
T ss_pred CCCCcHHHHHHHHHHHhhCCCceEEEEecccCCccceeEEEEEEeEEEEe--CCCeEEEECCCceEEEeeccccCCCCcc
Confidence 478999999999999988653332 22347999999999999996 778999999999999986 89999998
Q ss_pred ccCCcccccceeEEEEEeeEeeccCCCceEEEEEEeeCCCCcCccchhHHHHHHHHHHH
Q 044496 75 WNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREAMWYLEVMEAYKLF 133 (142)
Q Consensus 75 ~~~G~~~~~~~~YVmViG~~~~~~~~~p~i~a~K~~DLS~~p~re~mW~lEV~e~~~~~ 133 (142)
|++| |||||||.+++ |+++|+|+||||+|||++|+||+||+|||+|+||.+
T Consensus 99 l~~G-------~YVMV~G~v~~-~s~eP~i~AvKm~DLS~~p~~E~mW~lEV~el~r~i 149 (150)
T 3mxn_B 99 LVPG-------KYVMVMGVVQA-CSPEPCLQAVKMTDLSDNPIHESMWELEVEDLHRNI 149 (150)
T ss_dssp CSTT-------CEEEEEEEEEE-CSSSCEEEEEEEEECCSCHHHHHHHHHHHHHHHTTC
T ss_pred cCCC-------CEEEEEEEEEe-cCCCceEEEEEeeeCCCCcchHHHHHHHHHHHHhcC
Confidence 8999 99999999998 999999999999999999999999999999999875
No 2
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=99.46 E-value=1.2e-12 Score=96.46 Aligned_cols=115 Identities=18% Similarity=0.183 Sum_probs=94.4
Q ss_pred HHHHHhhccCCCCCCceeecCeEEeEEEEEEEEEeeeCC--CCcEEEEcCCe-eEEEEe--ccc-c-c-cccccCCcccc
Q 044496 11 LCVQLKDARESPSQNAVTLGGILFQRVWLQGVLVSPPDD--DGRLLLDDGTG-VVQIYL--SGD-F-R-IRRWNTGVFFF 82 (142)
Q Consensus 11 f~~QL~~a~~~~s~~~~~l~gl~~~~VWlQG~vv~~~~~--~~~~~LdDgTG-~~~v~~--~~~-~-~-~~~~~~G~~~~ 82 (142)
-++||.+|.+. .+.|.++|.++++|.+.|+|.++.+. .-.+.|||||| .+++.. +.. . . ...+++|
T Consensus 10 tIkqil~a~~~--~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g---- 83 (132)
T 3kdf_D 10 TISQLLSATLV--DEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPE---- 83 (132)
T ss_dssp CHHHHHTCEES--SSCEEETTEECCEEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEEC---------CCCCTT----
T ss_pred EHHHHhhCccC--CCcEEECCEEEEEEEEEEEEEEEEEcCCeEEEEEECCCCCEEEEEEEccCCCcccccccccCC----
Confidence 46999999875 35899999999999999999999655 34899999999 999987 222 1 1 2359999
Q ss_pred cceeEEEEEeeEeeccCCCceEEEEEEeeCCCCcCccchhHHHHHHHHHHHhhh
Q 044496 83 DFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREAMWYLEVMEAYKLFYQP 136 (142)
Q Consensus 83 ~~~~YVmViG~~~~~~~~~p~i~a~K~~DLS~~p~re~mW~lEV~e~~~~~y~~ 136 (142)
+||.|.|.++. .+..+-|.|.++.-+++ ++-...=.||++.+|..+=+|
T Consensus 84 ---~yVrV~G~l~~-f~g~~qi~~~~ir~v~d-~Nei~~H~Le~i~~hl~~~k~ 132 (132)
T 3kdf_D 84 ---TYVKVAGHLRS-FQNKKSLVAFKIMPLED-MNEFTTHILEVINAHMVLSKA 132 (132)
T ss_dssp ---CEEEEEEEEEE-ETTEEEEEEEEEEECSS-THHHHHHHHHHHHHHHHHHHC
T ss_pred ---CEEEEEEEEEe-ECCEEEEEEEEEEEcCC-ccHHHHHHHHHHHHHHeecCC
Confidence 99999999987 88889999999998876 677778899999999887654
No 3
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=99.46 E-value=9e-13 Score=97.63 Aligned_cols=114 Identities=15% Similarity=0.186 Sum_probs=94.1
Q ss_pred HHHHHhhccCCCCCCceeecCeEEeEEEEEEEEEeeeCCCC--cEEEEcCCeeEEEEe--cccc----ccccccCCcccc
Q 044496 11 LCVQLKDARESPSQNAVTLGGILFQRVWLQGVLVSPPDDDG--RLLLDDGTGVVQIYL--SGDF----RIRRWNTGVFFF 82 (142)
Q Consensus 11 f~~QL~~a~~~~s~~~~~l~gl~~~~VWlQG~vv~~~~~~~--~~~LdDgTG~~~v~~--~~~~----~~~~~~~G~~~~ 82 (142)
.++||.+|.+..+.+.|.++|.++++|.+.|+|+++.+... .+.|+||||.+.+.. +... ....+++|
T Consensus 13 tIkqil~a~~~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g---- 88 (136)
T 4gop_B 13 TIRQILNAEQPHPDAEFILDGAELGQLTFVAVVRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNN---- 88 (136)
T ss_dssp CHHHHHHCBCCSSSCCCBSSSSBCCEEEEEEEEEEEEECSSEEEEEEECSSCEEEEEEECC--------CCSCCTT----
T ss_pred EHHHHhhccccCCCCcEEECCEEEEEEEEEEEEEEEEecCCeEEEEEECCCCCEEEEEecccCCcccccccccCCC----
Confidence 46999999987545689999999999999999999965533 899999999999987 2221 12359999
Q ss_pred cceeEEEEEeeEeeccCCCceEEEEEEeeCCCCcCccchhHHHHHHHHHHH
Q 044496 83 DFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREAMWYLEVMEAYKLF 133 (142)
Q Consensus 83 ~~~~YVmViG~~~~~~~~~p~i~a~K~~DLS~~p~re~mW~lEV~e~~~~~ 133 (142)
+||.|.|.++. ....+-|.|.++.-+.+ ++-...=.||++.+|..+
T Consensus 89 ---~yVrV~G~v~~-f~g~~qi~~~~ir~v~d-~Nei~~H~Le~i~~hl~~ 134 (136)
T 4gop_B 89 ---VYVRVLGTLKS-FQNRRSISSGHMRPVID-YNEVMFHRLEAVHAHLQV 134 (136)
T ss_dssp ---CEEEEEEEEEE-ETTEEEEEESEEEECSS-HHHHHHHHHHHHHHHHHH
T ss_pred ---CEEEEEEEEEE-eCCEEEEEEEEEEECCC-ccHHHHHHHHHHHHHHhh
Confidence 99999999977 88889999999888866 777788899999998654
No 4
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=99.18 E-value=1.9e-10 Score=93.83 Aligned_cols=116 Identities=18% Similarity=0.170 Sum_probs=94.6
Q ss_pred HHHHHHHhhccCCCCCCceeecCeEEeEEEEEEEEEeeeCC--CCcEEEEcCCe-eEEEEe--cccc---ccccccCCcc
Q 044496 9 KLLCVQLKDARESPSQNAVTLGGILFQRVWLQGVLVSPPDD--DGRLLLDDGTG-VVQIYL--SGDF---RIRRWNTGVF 80 (142)
Q Consensus 9 Kvf~~QL~~a~~~~s~~~~~l~gl~~~~VWlQG~vv~~~~~--~~~~~LdDgTG-~~~v~~--~~~~---~~~~~~~G~~ 80 (142)
-+.++||.+|.+. .+.|.++|.++++|.+.|+|.++... .-++.|+|+|| .+.+.. +... ....+++|
T Consensus 48 PvtIkqil~a~~~--d~~f~i~g~~i~~V~ivG~V~~i~~~~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G-- 123 (270)
T 2pi2_A 48 PCTISQLLSATLV--DEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPE-- 123 (270)
T ss_dssp ECCHHHHHHCEEE--TTEEEETTEEESEEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEECC-------CCCCCTT--
T ss_pred EEEHHHHhcCccC--CCcEEECCEEEEEEEEEEEEEEEEeccceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCC--
Confidence 3568999999753 34799999999999999999999655 34899999999 899987 2221 22359999
Q ss_pred cccceeEEEEEeeEeeccCCCceEEEEEEeeCCCCcCccchhHHHHHHHHHHHhh
Q 044496 81 FFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREAMWYLEVMEAYKLFYQ 135 (142)
Q Consensus 81 ~~~~~~YVmViG~~~~~~~~~p~i~a~K~~DLS~~p~re~mW~lEV~e~~~~~y~ 135 (142)
+||.|.|.+.. ....+-|++.+|.-+.+ ++....+.|||+.+|..+=+
T Consensus 124 -----~yVrV~G~v~~-f~g~~qi~i~~ir~v~d-~nEi~~H~Le~i~~hl~~~~ 171 (270)
T 2pi2_A 124 -----TYVKVAGHLRS-FQNKKSLVAFKIMPLED-MNEFTTHILEVINAHMVLSK 171 (270)
T ss_dssp -----CEEEEEEEEEE-ETTEEEEEEEEEEECSC-THHHHHHHHHHHHHHHHHHH
T ss_pred -----CEEEEEEEEEe-cCCeeEEEEEEEEecCC-HhHHHHHHHHHHHHHHHHcc
Confidence 99999999987 88899999999988876 66788999999999987644
No 5
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=98.74 E-value=1.2e-07 Score=73.23 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=93.6
Q ss_pred HHHHHHHHhhccCCCC---CCceeecCeEEeEEEEEEEEEeeeCCC--CcEEEEcCCee-EEEEe--cc-ccc---cccc
Q 044496 8 LKLLCVQLKDARESPS---QNAVTLGGILFQRVWLQGVLVSPPDDD--GRLLLDDGTGV-VQIYL--SG-DFR---IRRW 75 (142)
Q Consensus 8 ~Kvf~~QL~~a~~~~s---~~~~~l~gl~~~~VWlQG~vv~~~~~~--~~~~LdDgTG~-~~v~~--~~-~~~---~~~~ 75 (142)
+|+|++=+-..++.+. ++. -.++..++.|-+.|+|+++++.+ -.+.||||||. +.+.. +. .+. ..++
T Consensus 19 v~L~i~DI~~l~~~~~~~~~~~-f~~n~PI~~V~IvGiVv~~~~~~~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l 97 (159)
T 3kf6_A 19 NPMFISDVHKISFHPHLQRYIG-FWMGFPIRWIQIVGYIAAIDIYEGKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISM 97 (159)
T ss_dssp CBCCHHHHTTCBCCCC---CCE-EETTEEECEEEEEEEEEEEEEETTEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTC
T ss_pred ecchHHHHHhchhcCCCCCcce-eECCeEEEEEEEEEEEEEEEEeCCEEEEEEecCCCCeEEEEEEccCCCCcccccccC
Confidence 4778888888877663 233 47899999999999999996543 37899999995 88886 22 111 2258
Q ss_pred cCCcccccceeEEEEEeeEeeccCCCceEEEEEEeeCCCCcCccchhHHHHHHHHHHHhhh
Q 044496 76 NTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREAMWYLEVMEAYKLFYQP 136 (142)
Q Consensus 76 ~~G~~~~~~~~YVmViG~~~~~~~~~p~i~a~K~~DLS~~p~re~mW~lEV~e~~~~~y~~ 136 (142)
..| .||.|.|.+.. ...+.-|.|-|+.-+.+ |+-|..+=.|..++-+.+ .|
T Consensus 98 ~~G-------~~VrV~G~v~~-fr~~rqI~~~~i~~v~d-~n~Ev~~W~~~~r~~~~l-~p 148 (159)
T 3kf6_A 98 SPG-------NVVCVFGKINS-FRSEVELIAQSFEELRD-PNDEWKAWQKRMRYKKNL-TK 148 (159)
T ss_dssp CTT-------CEEEEEEEEEC-SSSSCEEEEEEEEEECS-THHHHHHHHHHHHHHHHH-HH
T ss_pred CCC-------CEEEEEEEEEe-eCCEEEEEEEEEEECCC-cHHHHHHHHHHHHHHHhC-CC
Confidence 999 99999999977 78899999999999986 778888888998888873 44
No 6
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=97.71 E-value=0.00025 Score=51.97 Aligned_cols=72 Identities=17% Similarity=0.113 Sum_probs=58.3
Q ss_pred eEEeEEEEEEEEEeeeCCCCcEEEEcCCeeEEEEe-ccccccccccCCcccccceeEEEEEeeEeeccCCCceEEEEEEe
Q 044496 32 ILFQRVWLQGVLVSPPDDDGRLLLDDGTGVVQIYL-SGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIV 110 (142)
Q Consensus 32 l~~~~VWlQG~vv~~~~~~~~~~LdDgTG~~~v~~-~~~~~~~~~~~G~~~~~~~~YVmViG~~~~~~~~~p~i~a~K~~ 110 (142)
-.=+.|-|+|.|++. -+++.++..|+||.+.|.. +....++++.++ .-|.+.|.+-+ ....+.|.+.++.
T Consensus 35 ~Dd~~V~L~G~Iv~~-~~~d~Y~F~D~TG~I~VeId~~~w~g~~v~p~-------~~Vri~GevDk-d~~~~eIdV~~i~ 105 (109)
T 1nnx_A 35 RDDTWVTLRGNIVER-ISDDLYVFKDASGTINVDIDHKRWNGVTVTPK-------DTVEIQGEVDK-DWNSVEIDVKQIR 105 (109)
T ss_dssp CSSEEEEEEEEEEEE-EETTEEEEEETTEEEEEECCGGGSTTCCCCTT-------SCEEEEEEEEE-ETTEEEEEEEEEE
T ss_pred cCCCeEEEEEEEEEE-eCCCeEEEECCCccEEEEEChhhcCCcccCCC-------CEEEEEEEECC-CCCceEEEEEEEE
Confidence 344678899999995 4688999999999999998 556788899999 99999999987 3446777776665
Q ss_pred eC
Q 044496 111 DL 112 (142)
Q Consensus 111 DL 112 (142)
-|
T Consensus 106 ~~ 107 (109)
T 1nnx_A 106 KV 107 (109)
T ss_dssp EC
T ss_pred Ec
Confidence 33
No 7
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=96.63 E-value=0.018 Score=46.78 Aligned_cols=103 Identities=21% Similarity=0.204 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhccCCC---------CCCceeecCeEEeEEEEEEEEEeeeCCC----------CcEEEEcCCee---EEE
Q 044496 7 ALKLLCVQLKDARESP---------SQNAVTLGGILFQRVWLQGVLVSPPDDD----------GRLLLDDGTGV---VQI 64 (142)
Q Consensus 7 a~Kvf~~QL~~a~~~~---------s~~~~~l~gl~~~~VWlQG~vv~~~~~~----------~~~~LdDgTG~---~~v 64 (142)
.+++|++-|.+.++.. .++.+..++.-++.|-++|+||...... -.+.|||+||. +.|
T Consensus 49 ~vpL~I~DI~~l~~~~~~yg~~~~~~~~i~f~~NhPI~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~ 128 (220)
T 3kf8_A 49 TIPLFISDINNSPNLYGIYNYIADHLRHVVLVNNYPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRV 128 (220)
T ss_dssp EEECCHHHHHTCCCTHHHHGGGGGGCTTCEEETTEEECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEE
T ss_pred ccceEhHHhhhchhhhcccccccccCccEEEECCcccEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEE
Confidence 3466666666554422 1346778999999999999999996443 36899999997 555
Q ss_pred Eeccc---ccccc---ccCCcccccceeEEEEEeeEeeccCC--------CceEEEEEEeeCCCCcC
Q 044496 65 YLSGD---FRIRR---WNTGVFFFDFWMYVMVVGGFVIRTDD--------IPVIKVHKIVDLSAFPD 117 (142)
Q Consensus 65 ~~~~~---~~~~~---~~~G~~~~~~~~YVmViG~~~~~~~~--------~p~i~a~K~~DLS~~p~ 117 (142)
..+.. ..+.+ .+.| +-|-|-|.+.. .-+ +..|.|.|++=|+..|+
T Consensus 129 k~~~~~~~~~gl~l~~~~~G-------~iV~VkG~i~~-~r~~~~~~~~~~rei~ve~i~vl~~~~~ 187 (220)
T 3kf8_A 129 RLSQEQFKEVGLTLDKKNYG-------KIVELEGEIYN-WYDSINVSKKPDRELKVSKITVLSHRPD 187 (220)
T ss_dssp EEEHHHHHTTTCCTTSCCTT-------CEEEEEEEEEE-CCCSTTTTSCCCEEEEEEEEEEEESSSC
T ss_pred EecHHHhhccCccccccCCC-------eEEEEEEEEEe-eccccccccccceEEEEEEEEEeccCCC
Confidence 54321 12223 3478 99999999976 332 67999999999988733
No 8
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=96.54 E-value=0.024 Score=41.69 Aligned_cols=67 Identities=22% Similarity=0.178 Sum_probs=53.2
Q ss_pred eEEEEEEEEEeeeCCCCcEEEEcCCe-eEEEEeccccccccccCCcccccceeEEEEEeeEeeccCCCceEEEEEEeeCC
Q 044496 35 QRVWLQGVLVSPPDDDGRLLLDDGTG-VVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLS 113 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~~~~~~LdDgTG-~~~v~~~~~~~~~~~~~G~~~~~~~~YVmViG~~~~~~~~~p~i~a~K~~DLS 113 (142)
++|.+.|+|.+...+++.++|+++-| .++|.++.... ...+ .||-|+|.+.. .-.|+|...+|++
T Consensus 23 k~VrivGkV~~~~~~g~~~~l~s~Dg~~Vtv~l~~p~~---~~l~-------~~vEViG~V~~----~~tI~~~~~~~fg 88 (121)
T 3kdf_A 23 KPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLD---EEIS-------GIVEVVGRVTA----KATILCTSYVQFK 88 (121)
T ss_dssp CEEEEEEEEEEECTTSSEEEEECTTSCEEEEECSSCCS---SCCC-------SEEEEEEEECT----TSCEEEEEEEECC
T ss_pred CeEEEEEEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCC---cccC-------cEEEEEEEECC----CCeEEEEEEEecC
Confidence 77999999999977788999998865 69999865211 1225 79999999854 4589999999999
Q ss_pred CC
Q 044496 114 AF 115 (142)
Q Consensus 114 ~~ 115 (142)
++
T Consensus 89 ~~ 90 (121)
T 3kdf_A 89 ED 90 (121)
T ss_dssp CS
T ss_pred CC
Confidence 86
No 9
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=96.50 E-value=0.023 Score=43.07 Aligned_cols=67 Identities=22% Similarity=0.178 Sum_probs=53.4
Q ss_pred eEEEEEEEEEeeeCCCCcEEEEcCCe-eEEEEeccccccccccCCcccccceeEEEEEeeEeeccCCCceEEEEEEeeCC
Q 044496 35 QRVWLQGVLVSPPDDDGRLLLDDGTG-VVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHKIVDLS 113 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~~~~~~LdDgTG-~~~v~~~~~~~~~~~~~G~~~~~~~~YVmViG~~~~~~~~~p~i~a~K~~DLS 113 (142)
++|.+.|+|.+...+++.++|..+.| .++|.++... .-..+ .||-|+|.+.. .-.|++...++++
T Consensus 44 k~VriVGkV~~~~~~G~~~~l~s~Dg~~VtV~l~~pL---~~~~~-------~~VEViG~V~~----~~tI~~~~~~~fG 109 (142)
T 2pi2_E 44 KPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPL---DEEIS-------GIVEVVGRVTA----KATILCTSYVQFK 109 (142)
T ss_dssp CEEEEEEEEEEECTTSSEEEEECTTSCEEEEECSSCC---SSCCC-------SEEEEEEEECT----TSCEEEEEEEECC
T ss_pred CEEEEEEEEeEEcCCCCEEEEEeCCCcEEEEEeCCCC---CccCC-------CEEEEEEEECC----CCcEEEEEEEecC
Confidence 67899999999987899999999865 5999886411 11347 89999999844 4579999999999
Q ss_pred CC
Q 044496 114 AF 115 (142)
Q Consensus 114 ~~ 115 (142)
++
T Consensus 110 d~ 111 (142)
T 2pi2_E 110 ED 111 (142)
T ss_dssp CS
T ss_pred CC
Confidence 86
No 10
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=95.81 E-value=0.035 Score=38.79 Aligned_cols=76 Identities=8% Similarity=0.179 Sum_probs=51.3
Q ss_pred EEEEEEEEEeeeC------CCC------cEEEEcCCeeEEEEe-ccccc-cccccCCcccccceeEEEEEeeEeec-cCC
Q 044496 36 RVWLQGVLVSPPD------DDG------RLLLDDGTGVVQIYL-SGDFR-IRRWNTGVFFFDFWMYVMVVGGFVIR-TDD 100 (142)
Q Consensus 36 ~VWlQG~vv~~~~------~~~------~~~LdDgTG~~~v~~-~~~~~-~~~~~~G~~~~~~~~YVmViG~~~~~-~~~ 100 (142)
.+-+.|+|.++.+ .+| .+.|-|+||.+++.+ +.... ...+++| ++|++-|.+... .+.
T Consensus 18 ~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~~~~~~l~~G-------~vv~i~g~~v~~~f~g 90 (115)
T 2k50_A 18 ETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIKLLKKFREG-------DVIRIKDVNIRGGFGG 90 (115)
T ss_dssp EEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGGGGGGTCCTT-------SEEEEEEEEECCCSSS
T ss_pred EeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchhhhhhcCCCC-------CEEEEEeeEEccccCC
Confidence 4567888888821 122 588999999999987 33222 2359999 999999998543 556
Q ss_pred CceEEEEEEeeCCCCcCc
Q 044496 101 IPVIKVHKIVDLSAFPDR 118 (142)
Q Consensus 101 ~p~i~a~K~~DLS~~p~r 118 (142)
.+.|.+-+...+..+|+-
T Consensus 91 ~~qL~~~~~~~i~~~~~~ 108 (115)
T 2k50_A 91 RKEAHLMPRSTVEVLDPL 108 (115)
T ss_dssp SCEEEECTTCCEEEESSC
T ss_pred eEEEEECCCceEEECCcc
Confidence 677776555544444443
No 11
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=95.45 E-value=0.32 Score=34.33 Aligned_cols=72 Identities=21% Similarity=0.193 Sum_probs=51.4
Q ss_pred eEEEEEEEEEeeeC------CCC------cEEEEcCCeeEEEEe-ccccccccccCCcccccceeEEEEEeeEeeccCCC
Q 044496 35 QRVWLQGVLVSPPD------DDG------RLLLDDGTGVVQIYL-SGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDI 101 (142)
Q Consensus 35 ~~VWlQG~vv~~~~------~~~------~~~LdDgTG~~~v~~-~~~~~~~~~~~G~~~~~~~~YVmViG~~~~~~~~~ 101 (142)
.+|-+.|+|+++.+ .+| ++.|.|.||.+++.+ ...... .+++| +.|.+-|.++......
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~~-~l~~G-------dvv~i~g~vk~~~~g~ 86 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTDI-DVGRG-------DYVRVRGYIREGYYGG 86 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGGS-CCCTT-------CEEEEEEEEEECTTSS
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECccccc-ccCCC-------CEEEEEEEEEEccCCC
Confidence 67889999998842 133 699999999999997 333322 89999 8888877676633446
Q ss_pred ceEEEEEEeeCCC
Q 044496 102 PVIKVHKIVDLSA 114 (142)
Q Consensus 102 p~i~a~K~~DLS~ 114 (142)
..|.+-+-.-+..
T Consensus 87 ~eL~~g~~~~i~~ 99 (105)
T 3dm3_A 87 LECTANYVEILKK 99 (105)
T ss_dssp EEEEEEEEEEEEC
T ss_pred EEEEeCCceEEEe
Confidence 7777766555544
No 12
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=95.17 E-value=0.13 Score=44.29 Aligned_cols=69 Identities=28% Similarity=0.213 Sum_probs=53.9
Q ss_pred EEEEEEEEEeeeCCCC--cEEEEcCCeeEEEEecccccccccc-CCcccccceeEEEEEeeEeeccC--CCceEEEEEEe
Q 044496 36 RVWLQGVLVSPPDDDG--RLLLDDGTGVVQIYLSGDFRIRRWN-TGVFFFDFWMYVMVVGGFVIRTD--DIPVIKVHKIV 110 (142)
Q Consensus 36 ~VWlQG~vv~~~~~~~--~~~LdDgTG~~~v~~~~~~~~~~~~-~G~~~~~~~~YVmViG~~~~~~~--~~p~i~a~K~~ 110 (142)
.|.+.|.|.++..-++ =+.|.|+||.+++..+. ..++ .| ..|.|.|.+.++.. .+-.|+|.++.
T Consensus 15 ~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~----~~l~~~~-------~~v~v~G~v~~~~~~~~~~el~~~~~~ 83 (422)
T 1n9w_A 15 EVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGG----LKLPLPE-------SALRVRGLVVENAKAPGGLEVQAKEVE 83 (422)
T ss_dssp EEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEES----CCCCCTT-------CEEEEEEEEEECTTSTTSEEEEEEEEE
T ss_pred EEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEEc----cccCCCC-------CEEEEEEEEEecCCCCccEEEEEeEEE
Confidence 5899999999965544 36688999999998754 4688 99 99999999988432 26788888777
Q ss_pred eCCCC
Q 044496 111 DLSAF 115 (142)
Q Consensus 111 DLS~~ 115 (142)
=||.+
T Consensus 84 vl~~~ 88 (422)
T 1n9w_A 84 VLSPA 88 (422)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 77754
No 13
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=95.15 E-value=0.097 Score=37.90 Aligned_cols=70 Identities=23% Similarity=0.258 Sum_probs=49.2
Q ss_pred eEEEEEEEEEeeeCCCCcEEEEcCC-eeEEEEeccccccccccCCcccccceeEEEEEeeEeeccCC---CceEEEEEEe
Q 044496 35 QRVWLQGVLVSPPDDDGRLLLDDGT-GVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDD---IPVIKVHKIV 110 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~~~~~~LdDgT-G~~~v~~~~~~~~~~~~~G~~~~~~~~YVmViG~~~~~~~~---~p~i~a~K~~ 110 (142)
++|.+.|+|.+.. ++.++|..++ |.++|.++... .+..| .||-|+|.+.. .+. --.|++...+
T Consensus 19 ~~VrivGkV~~~~--g~~~~l~s~d~~~Vtv~l~~~~---~~~~~-------~~vEViG~V~~-~~~~~~~~~I~~~~~~ 85 (114)
T 4gop_A 19 QTVRIVGKVHKVT--GNTLLMQTSDLGNVEIAMTPDS---DVSSS-------TFVEVTGKVSD-AGSSFQANQIREFTTV 85 (114)
T ss_dssp SEEEEEEEEEEEE--TTEEEEECTTSCEEEEECCSSC---CGGGC-------SEEEEEEEECT-TSSEEEEEEEEECSCC
T ss_pred CeEEEEEEEeeeC--CCEEEEEeCCCCEEEEEeCCCC---CcccC-------cEEEEEEEEcC-CCCcccCCeEEEEEEE
Confidence 6799999999985 4899999874 45888886522 35578 99999998854 211 1788888888
Q ss_pred eCCCCcC
Q 044496 111 DLSAFPD 117 (142)
Q Consensus 111 DLS~~p~ 117 (142)
|+.++=+
T Consensus 86 ~~g~~~D 92 (114)
T 4gop_A 86 DCGHDVD 92 (114)
T ss_dssp C----CC
T ss_pred eCCCccC
Confidence 8876533
No 14
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=94.95 E-value=0.44 Score=32.82 Aligned_cols=67 Identities=22% Similarity=0.136 Sum_probs=45.9
Q ss_pred eEEEEEEEEEeeeCC------CC------cEEEEcCCeeEEEEe-ccccccccccCCcccccceeEEEEEeeEeeccCCC
Q 044496 35 QRVWLQGVLVSPPDD------DG------RLLLDDGTGVVQIYL-SGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDI 101 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~------~~------~~~LdDgTG~~~v~~-~~~~~~~~~~~G~~~~~~~~YVmViG~~~~~~~~~ 101 (142)
.++-+.|+|+++.+- +| ++.|.|.||.+++.+ +..... .+++| ++|.+-|.+.. ....
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~~~-~i~~G-------dvv~i~g~v~~-~~~~ 82 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELADF-EVKKG-------DIAEVSGYVKQ-GYSG 82 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGGGC-CCCTT-------CEEEEEEEEEE-C--C
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCcccc-ccCCC-------CEEEEEEEEEE-cCCe
Confidence 567889999988421 23 589999999999997 332222 79999 99999887765 3445
Q ss_pred ceEEEEEEe
Q 044496 102 PVIKVHKIV 110 (142)
Q Consensus 102 p~i~a~K~~ 110 (142)
..|.+-+-.
T Consensus 83 ~el~~g~~~ 91 (97)
T 3e0e_A 83 LEISVDNIG 91 (97)
T ss_dssp EEEEEEEEE
T ss_pred EEEEECCCc
Confidence 566555443
No 15
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=94.68 E-value=0.27 Score=34.70 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=50.4
Q ss_pred eEEEEEEEEEeeeCCCC-----cEEEEcCCeeEEEEe-ccccccccccCCcccccceeEEEEEeeEeeccCCCceEEEEE
Q 044496 35 QRVWLQGVLVSPPDDDG-----RLLLDDGTGVVQIYL-SGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHK 108 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~~~-----~~~LdDgTG~~~v~~-~~~~~~~~~~~G~~~~~~~~YVmViG~~~~~~~~~p~i~a~K 108 (142)
..|-+.|+|+++.+..+ .++|-|.||++++.+ +.. ....+++| +.|.+-+......+..+.|..-+
T Consensus 16 ~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~-~~~~~~~G-------~~V~i~n~~v~~~~G~~~L~v~~ 87 (109)
T 2kbn_A 16 QWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNA-ELPLLEQG-------ESYLLRSVVVGEYNDRFQVQVNK 87 (109)
T ss_dssp CEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGG-CCCCCCTT-------CEEEEEEEEEEEETTEEEEEECS
T ss_pred CcEEEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECcc-cccccCCC-------CEEEEEEEEEEEECCEEEEEECC
Confidence 44667888888854433 589999999999998 422 23369999 99999966655577778777655
Q ss_pred EeeC
Q 044496 109 IVDL 112 (142)
Q Consensus 109 ~~DL 112 (142)
...+
T Consensus 88 ~~~I 91 (109)
T 2kbn_A 88 NSSI 91 (109)
T ss_dssp SSEE
T ss_pred ceEE
Confidence 4433
No 16
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=94.62 E-value=0.2 Score=43.68 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=53.7
Q ss_pred eEEEEEEEEEeeeCCCC--c-EEEEcCCeeEEEEecc-c-c---ccccccCCcccccceeEEEEEeeEeeccC-------
Q 044496 35 QRVWLQGVLVSPPDDDG--R-LLLDDGTGVVQIYLSG-D-F---RIRRWNTGVFFFDFWMYVMVVGGFVIRTD------- 99 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~~~--~-~~LdDgTG~~~v~~~~-~-~---~~~~~~~G~~~~~~~~YVmViG~~~~~~~------- 99 (142)
+.|++.|.|.++..-++ . +.|.|+||.+++..+. . . ....+..| ..|.|-|.+.++..
T Consensus 31 ~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~l~~g-------~~V~V~G~v~~~~~~~~~~~~ 103 (456)
T 3m4p_A 31 KLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRE-------CSLEITGRLNAYAGKNHPPEI 103 (456)
T ss_dssp SEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTTTTCHHHHTTCCTT-------CEEEEEEEEECCCSSSCCCSC
T ss_pred CEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEecccchhhHHhhcCCCc-------cEEEEEeEEEecCCcccCccc
Confidence 56899999999875533 2 4699999999988743 1 1 11248889 99999999986321
Q ss_pred ---CCceEEEEEEeeCCCCc
Q 044496 100 ---DIPVIKVHKIVDLSAFP 116 (142)
Q Consensus 100 ---~~p~i~a~K~~DLS~~p 116 (142)
.+-.|+|.++.=||.++
T Consensus 104 ~t~g~~El~~~~i~vl~~a~ 123 (456)
T 3m4p_A 104 ADILNLEMQVTEWKVIGESP 123 (456)
T ss_dssp TTBCSSEEEEEEEEEEECCC
T ss_pred CCCCcEEEEEeEEEEEecCC
Confidence 34588887776666643
No 17
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=94.59 E-value=0.2 Score=44.26 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=55.6
Q ss_pred eEEEEEEEEEeeeCCCC--cEEEEcCCeeEEEEeccc--c----c--cccccCCcccccceeEEEEEeeEeeccCCCceE
Q 044496 35 QRVWLQGVLVSPPDDDG--RLLLDDGTGVVQIYLSGD--F----R--IRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVI 104 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~~~--~~~LdDgTG~~~v~~~~~--~----~--~~~~~~G~~~~~~~~YVmViG~~~~~~~~~p~i 104 (142)
+.|++.|.|.++..-++ =+.|.|+||.++|..+.. . + -..+..| ..|.|.|.+..+...+-.|
T Consensus 65 ~~V~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~g-------~~V~V~G~v~~~~~ge~ei 137 (504)
T 1e1o_A 65 IEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLG-------DIIGARGTLFKTQTGELSI 137 (504)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTT-------CEEEEEEEEEECTTCCEEE
T ss_pred CEEEEEEEEEEEecCCCcEEEEEEECCeeEEEEEECCcCCHHHHHHHHhcCCCC-------CEEEEEEEEEecCCceEEE
Confidence 36999999999864433 356789999999987322 1 1 1348899 9999999998865567788
Q ss_pred EEEEEeeCCCC
Q 044496 105 KVHKIVDLSAF 115 (142)
Q Consensus 105 ~a~K~~DLS~~ 115 (142)
+|.++.=||.+
T Consensus 138 ~~~~i~vl~~a 148 (504)
T 1e1o_A 138 HCTELRLLTKA 148 (504)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEeccc
Confidence 88888777753
No 18
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=94.38 E-value=0.17 Score=44.89 Aligned_cols=74 Identities=14% Similarity=-0.019 Sum_probs=56.0
Q ss_pred eEEEEEEEEEeeeCCC-C--cEEEEcCCeeEEEEecccc-------cc--ccccCCcccccceeEEEEEeeEeeccCCCc
Q 044496 35 QRVWLQGVLVSPPDDD-G--RLLLDDGTGVVQIYLSGDF-------RI--RRWNTGVFFFDFWMYVMVVGGFVIRTDDIP 102 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~~-~--~~~LdDgTG~~~v~~~~~~-------~~--~~~~~G~~~~~~~~YVmViG~~~~~~~~~p 102 (142)
+.|++.|+|.++..-+ + =+.|.|+||.+++..+... .. ..+..| ..|.|.|.+..+...+-
T Consensus 56 ~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~g-------d~V~V~G~v~~t~~ge~ 128 (521)
T 3bju_A 56 ITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRG-------DIIGVQGNPGKTKKGEL 128 (521)
T ss_dssp CCEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTT-------CEEEEEEEEEECTTCCE
T ss_pred cEEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCCC-------CEEEEEEEEEecCCCCE
Confidence 4699999999996544 3 2678999999999873211 11 247899 99999999988555577
Q ss_pred eEEEEEEeeCCCC
Q 044496 103 VIKVHKIVDLSAF 115 (142)
Q Consensus 103 ~i~a~K~~DLS~~ 115 (142)
.|+|.++.=||.+
T Consensus 129 ei~~~~i~~l~~~ 141 (521)
T 3bju_A 129 SIIPYEITLLSPC 141 (521)
T ss_dssp EEEEEEEEEEECC
T ss_pred EEEEeEEEEeecC
Confidence 8888888777753
No 19
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=94.36 E-value=0.26 Score=42.54 Aligned_cols=74 Identities=19% Similarity=0.131 Sum_probs=54.2
Q ss_pred eEEEEEEEEEeeeCCCC--cEEEEcCCeeEEEEecccc---c-cccccCCcccccceeEEEEEeeEeeccCC--CceEEE
Q 044496 35 QRVWLQGVLVSPPDDDG--RLLLDDGTGVVQIYLSGDF---R-IRRWNTGVFFFDFWMYVMVVGGFVIRTDD--IPVIKV 106 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~~~--~~~LdDgTG~~~v~~~~~~---~-~~~~~~G~~~~~~~~YVmViG~~~~~~~~--~p~i~a 106 (142)
+.|.+.|.|.++..-++ =+.|.|+||.+++..+... + -..++.| ..|.|.|.+..+... +-.|.|
T Consensus 17 ~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~l~~~-------~~v~v~G~v~~~~~~~~~~el~~ 89 (429)
T 1wyd_A 17 KEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVDKNSSAFGISQELTQE-------SVIQVRGIVKADKRAPRGIELHA 89 (429)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECTTSTTHHHHTTCCTT-------CEEEEEEEEEECSSSGGGEEEEE
T ss_pred CEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCChHHHHHHHhCCCC-------CEEEEEEEEEecCCCCccEEEEE
Confidence 35889999999865444 2668899999999874321 1 1348999 999999999884332 567888
Q ss_pred EEEeeCCCC
Q 044496 107 HKIVDLSAF 115 (142)
Q Consensus 107 ~K~~DLS~~ 115 (142)
.++.=||.+
T Consensus 90 ~~~~vl~~~ 98 (429)
T 1wyd_A 90 EEITLLSKA 98 (429)
T ss_dssp EEEEEEECC
T ss_pred eEEEEeccC
Confidence 877777654
No 20
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=94.33 E-value=0.24 Score=43.42 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=54.2
Q ss_pred eEEEEEEEEEeeeCCCCc---EEEEcCCeeEEEEeccc-----ccc-----ccccCCcccccceeEEEEEeeEeeccC--
Q 044496 35 QRVWLQGVLVSPPDDDGR---LLLDDGTGVVQIYLSGD-----FRI-----RRWNTGVFFFDFWMYVMVVGGFVIRTD-- 99 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~~~~---~~LdDgTG~~~v~~~~~-----~~~-----~~~~~G~~~~~~~~YVmViG~~~~~~~-- 99 (142)
+.|++.|.|.++..-++. +.|.|+||.+++..+.. .+. ..++.| ..|.|.|.+.++..
T Consensus 37 ~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e-------~~V~V~G~v~~~~~~~ 109 (487)
T 1eov_A 37 KEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLE-------SIVLVRGIVKKVDEPI 109 (487)
T ss_dssp CEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTT-------CEEEEEEEEEECSSCC
T ss_pred CEEEEEEEEEEeeccCCccEEEEEEECCccEEEEEeccccccccHHHHHHHhcCCCC-------CEEEEEEEEEeCCCCC
Confidence 469999999999765554 57889999999987432 111 248899 99999999988432
Q ss_pred -----CCceEEEEEEeeCCCC
Q 044496 100 -----DIPVIKVHKIVDLSAF 115 (142)
Q Consensus 100 -----~~p~i~a~K~~DLS~~ 115 (142)
.+-.|.|.++.=||.+
T Consensus 110 ~~~~~g~~El~~~~i~vl~~a 130 (487)
T 1eov_A 110 KSATVQNLEIHITKIYTISET 130 (487)
T ss_dssp TTSSEEEEEEEEEEEEEEECC
T ss_pred cCCCCCcEEEEEEEEEEeecc
Confidence 2457778777777753
No 21
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=94.27 E-value=0.24 Score=43.03 Aligned_cols=74 Identities=27% Similarity=0.219 Sum_probs=54.0
Q ss_pred eEEEEEEEEEeeeCCCC-c-EEEEcCCeeEEEEecccc------c-cccccCCcccccceeEEEEEeeEeeccC--CCce
Q 044496 35 QRVWLQGVLVSPPDDDG-R-LLLDDGTGVVQIYLSGDF------R-IRRWNTGVFFFDFWMYVMVVGGFVIRTD--DIPV 103 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~~~-~-~~LdDgTG~~~v~~~~~~------~-~~~~~~G~~~~~~~~YVmViG~~~~~~~--~~p~ 103 (142)
+.|++.|.|.++..-++ . +.|.|+||.+++..+... + ...++.| ..|.|-|.+..+.. .+-.
T Consensus 17 ~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~-------~~V~V~G~v~~~~~~~~~~e 89 (438)
T 3nem_A 17 QKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSE-------DVVAVEGVVNFTPKAKLGFE 89 (438)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTT-------CEEEEEEEEEECTTSTTSEE
T ss_pred CEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCcCCHHHHHHHhcCCCC-------CEEEEEEEEEeCCCCCCcEE
Confidence 46899999999864444 3 469999999998874321 1 2258999 99999999987432 4567
Q ss_pred EEEEEEeeCCCC
Q 044496 104 IKVHKIVDLSAF 115 (142)
Q Consensus 104 i~a~K~~DLS~~ 115 (142)
|+|.++.=||.+
T Consensus 90 l~~~~i~vl~~~ 101 (438)
T 3nem_A 90 ILPEKIVVLNRA 101 (438)
T ss_dssp EEEEEEEEEECB
T ss_pred EEEEEEEEEecC
Confidence 888777766653
No 22
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=94.07 E-value=0.29 Score=43.96 Aligned_cols=74 Identities=22% Similarity=0.181 Sum_probs=53.9
Q ss_pred eEEEEEEEEEeeeCCCCc--EEEEcCCeeEEEEecccc---c-cccccCCcccccceeEEEEEeeEeecc-------CCC
Q 044496 35 QRVWLQGVLVSPPDDDGR--LLLDDGTGVVQIYLSGDF---R-IRRWNTGVFFFDFWMYVMVVGGFVIRT-------DDI 101 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~~~~--~~LdDgTG~~~v~~~~~~---~-~~~~~~G~~~~~~~~YVmViG~~~~~~-------~~~ 101 (142)
+.|++.|.|.++..-++. +.|.|+||.+++..+... + -..++.| ..|.|.|.+..+. ..+
T Consensus 17 ~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~e-------~~V~V~G~v~~~~~~~~~~~~ge 89 (580)
T 1l0w_A 17 EEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPASPAYATAERVRPE-------WVVRAKGLVRLRPEPNPRLATGR 89 (580)
T ss_dssp CEEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECTTSTTHHHHTTCCTT-------CEEEEEEEEEECSSCCTTSTTTT
T ss_pred CEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCChhHHHHHhcCCCC-------cEEEEEEEEEcCCCcCccCCCcc
Confidence 358999999999655443 568899999999874321 1 1248899 9999999998842 235
Q ss_pred ceEEEEEEeeCCCC
Q 044496 102 PVIKVHKIVDLSAF 115 (142)
Q Consensus 102 p~i~a~K~~DLS~~ 115 (142)
-.|.|.++.=||.+
T Consensus 90 ~Ei~~~~i~vl~~a 103 (580)
T 1l0w_A 90 VEVELSALEVLAEA 103 (580)
T ss_dssp EEEEEEEEEEEECC
T ss_pred EEEEEeEEEEeccC
Confidence 67888777767654
No 23
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=93.92 E-value=0.36 Score=41.61 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=51.5
Q ss_pred EEEEEEEEEeeeCCCC---cEEEEcCCeeEEEEecccc-c---cccccCCcccccceeEEEEEeeEeecc-----CCCce
Q 044496 36 RVWLQGVLVSPPDDDG---RLLLDDGTGVVQIYLSGDF-R---IRRWNTGVFFFDFWMYVMVVGGFVIRT-----DDIPV 103 (142)
Q Consensus 36 ~VWlQG~vv~~~~~~~---~~~LdDgTG~~~v~~~~~~-~---~~~~~~G~~~~~~~~YVmViG~~~~~~-----~~~p~ 103 (142)
.|++.|.|.++..-++ =+.|.|+||.+++..+... . ...+..| ..|.|-|.+.++. ..+-.
T Consensus 13 ~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~~-------~~v~v~G~v~~~~~~~~~~g~~E 85 (435)
T 2xgt_A 13 RVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNTE-------CTVEIYGAIKEVPEGKEAPNGHE 85 (435)
T ss_dssp EEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGGGGSSHHHHHCCTT-------CEEEEEEEEEECC------TTEE
T ss_pred EEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCcchhHHHHhcCCCC-------CEEEEEEEEEecCCCcCCCCcEE
Confidence 5899999999975543 3678999999999874221 1 1147889 9999999998732 23457
Q ss_pred EEEEEEeeCCC
Q 044496 104 IKVHKIVDLSA 114 (142)
Q Consensus 104 i~a~K~~DLS~ 114 (142)
|.|.++.=||.
T Consensus 86 l~~~~~~vl~~ 96 (435)
T 2xgt_A 86 LIADFWKIIGN 96 (435)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEEEEEeec
Confidence 77777666663
No 24
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=93.88 E-value=0.22 Score=44.60 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=55.2
Q ss_pred eEEEEEEEEEeeeCCCC-c-EEEEcCCeeEEEEeccc--cc-----cccccCCcccccceeEEEEEeeEeeccCCCceEE
Q 044496 35 QRVWLQGVLVSPPDDDG-R-LLLDDGTGVVQIYLSGD--FR-----IRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIK 105 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~~~-~-~~LdDgTG~~~v~~~~~--~~-----~~~~~~G~~~~~~~~YVmViG~~~~~~~~~p~i~ 105 (142)
+.|++.|+|.++..-++ . +.|.|+||.+++..+.. .. -+.+..| +.|.|-|.+......+-.|.
T Consensus 87 ~~V~v~GwV~~~R~~Gk~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~g-------d~V~V~G~v~~t~~gelel~ 159 (529)
T 4ex5_A 87 LEVAIAGRMMLKRVMGKASFATVQDGSGQIQFFVTPADVGAETYDAFKKWDLG-------DIVAARGVLFRTNKGELSVK 159 (529)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEECSSCEEEEEECHHHHCHHHHHHHHTCCTT-------CEEEEEEEEEECTTSCEEEE
T ss_pred cEEEEEEEEEeeecCCCeEEEEEEeCCeeEEEEEECCcCCHHHHHHHhcCCCC-------CEEEEEEEEEEcCCCcEEEE
Confidence 46899999999864443 3 46999999999987432 11 1248999 99999999988544577888
Q ss_pred EEEEeeCCCC
Q 044496 106 VHKIVDLSAF 115 (142)
Q Consensus 106 a~K~~DLS~~ 115 (142)
|.++.=||.+
T Consensus 160 ~~~i~vLs~a 169 (529)
T 4ex5_A 160 CTQLRLLAKA 169 (529)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEecC
Confidence 8877767664
No 25
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=93.41 E-value=0.24 Score=43.59 Aligned_cols=74 Identities=23% Similarity=0.160 Sum_probs=55.8
Q ss_pred eEEEEEEEEEeeeCCCC--cEEEEcCCeeEEEEeccc--c----c-cccccCCcccccceeEEEEEeeEeeccCCCceEE
Q 044496 35 QRVWLQGVLVSPPDDDG--RLLLDDGTGVVQIYLSGD--F----R-IRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIK 105 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~~~--~~~LdDgTG~~~v~~~~~--~----~-~~~~~~G~~~~~~~~YVmViG~~~~~~~~~p~i~ 105 (142)
+.|++.|.|.++..-++ =+.|.|+||.+++..+.. . + -..+..| ..|.|-|.+.++...+-.|+
T Consensus 57 ~~V~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~g-------~~v~V~G~v~~~~~ge~ei~ 129 (493)
T 3a74_A 57 IEVAVAGRIMTKRGMGKAGFAHIQDVTGQIQIYVRQDDVGEQQYELFKISDLG-------DIVGVRGTMFKTKVGELSIK 129 (493)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCCTT-------CEEEEEEEEEECTTCCEEEE
T ss_pred CEEEEEEEEEEEecCCCcEEEEEEECCEeEEEEEECCcCCHHHHHHHhcCCCC-------CEEEEEEEEEeCCCCcEEEE
Confidence 36999999999864433 356889999999987322 1 1 1248999 99999999988655677888
Q ss_pred EEEEeeCCCC
Q 044496 106 VHKIVDLSAF 115 (142)
Q Consensus 106 a~K~~DLS~~ 115 (142)
|.++.=||.+
T Consensus 130 ~~~i~vl~~~ 139 (493)
T 3a74_A 130 VSSYEFLTKA 139 (493)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEcccc
Confidence 8888777754
No 26
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=93.36 E-value=0.46 Score=42.64 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=54.2
Q ss_pred EEEEEEEEEeeeCCCC--cEEEEcCCeeEEEEecccc----c-cccccCCcccccceeEEEEEeeEeecc---------C
Q 044496 36 RVWLQGVLVSPPDDDG--RLLLDDGTGVVQIYLSGDF----R-IRRWNTGVFFFDFWMYVMVVGGFVIRT---------D 99 (142)
Q Consensus 36 ~VWlQG~vv~~~~~~~--~~~LdDgTG~~~v~~~~~~----~-~~~~~~G~~~~~~~~YVmViG~~~~~~---------~ 99 (142)
.|++.|.|.++..-++ =+.|.|+||.++|..+... + -..++.| ..|.|-|.+..+. .
T Consensus 17 ~V~l~GwV~~~R~~G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~l~~e-------~~V~V~G~v~~~~~~~~n~~~~~ 89 (585)
T 1c0a_A 17 QVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNE-------FCIQVTGTVRARDEKNINRDMAT 89 (585)
T ss_dssp EEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTT-------CEEEEEEEEEECCTTTCCTTSTT
T ss_pred EEEEEEEEEEEecCCCcEEEEEEECCeeEEEEEeCCchHHHHHHhcCCCC-------CEEEEEeEEEccCcccccccCCC
Confidence 5899999999965444 3668899999999874321 1 1248999 9999999998741 2
Q ss_pred CCceEEEEEEeeCCCC
Q 044496 100 DIPVIKVHKIVDLSAF 115 (142)
Q Consensus 100 ~~p~i~a~K~~DLS~~ 115 (142)
.+-.|.|.++.=||.+
T Consensus 90 geiEl~~~~i~vl~~a 105 (585)
T 1c0a_A 90 GEIEVLASSLTIINRA 105 (585)
T ss_dssp TTEEEEEEEEEEEECC
T ss_pred ccEEEEEeEEEEEecc
Confidence 3568888887777754
No 27
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=93.03 E-value=0.62 Score=41.90 Aligned_cols=74 Identities=14% Similarity=0.051 Sum_probs=53.9
Q ss_pred eEEEEEEEEEeeeCCCC-c-EEEEcCCeeEEEEecc---cccc-----ccccCCcccccceeEEEEEeeEeeccC-----
Q 044496 35 QRVWLQGVLVSPPDDDG-R-LLLDDGTGVVQIYLSG---DFRI-----RRWNTGVFFFDFWMYVMVVGGFVIRTD----- 99 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~~~-~-~~LdDgTG~~~v~~~~---~~~~-----~~~~~G~~~~~~~~YVmViG~~~~~~~----- 99 (142)
+.||+.|+|.++..-++ . +.|.|+||.+++..+. ..+. ..+..| ..|-|-|.+.++..
T Consensus 63 ~~V~v~Gwv~~~R~~gkl~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~~e-------s~V~V~G~v~~~~~~~~~~ 135 (548)
T 3i7f_A 63 KTVTIRARVQAVRGKGNMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAE-------SICDITGIVKAVEKPIEKA 135 (548)
T ss_dssp CEEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHTCCTT-------EEEEEEEEEEECSSCCTTS
T ss_pred CEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEECCCccCHHHHHHHhCCCCC-------CEEEEEEEEEeCCcccccC
Confidence 67999999999865444 3 3499999999998743 1111 248899 99999999988422
Q ss_pred --CCceEEEEEEeeCCCC
Q 044496 100 --DIPVIKVHKIVDLSAF 115 (142)
Q Consensus 100 --~~p~i~a~K~~DLS~~ 115 (142)
.+-.|+|-++.=||.+
T Consensus 136 ~~~~~El~~~~i~vls~a 153 (548)
T 3i7f_A 136 TQQDVEIHVTSIAVVSLA 153 (548)
T ss_dssp SSCSEEEEEEEEEEEECC
T ss_pred CCCcEEEEEeEEEEEecC
Confidence 3567888777666664
No 28
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=92.79 E-value=0.8 Score=32.13 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=42.4
Q ss_pred EEEEEEEEeeeCC----CC------cEEEEcCCeeEEEEeccccccccccCCcccccceeEEEEEeeEeeccCCCceEEE
Q 044496 37 VWLQGVLVSPPDD----DG------RLLLDDGTGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKV 106 (142)
Q Consensus 37 VWlQG~vv~~~~~----~~------~~~LdDgTG~~~v~~~~~~~~~~~~~G~~~~~~~~YVmViG~~~~~~~~~p~i~a 106 (142)
|-+.|.|+++.+. +| .++|-|.||.+.+.+=.+. +++| +.|.+-++........+.|.+
T Consensus 16 v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~~----l~~G-------dvv~i~ng~v~~~~g~~~L~v 84 (106)
T 2k75_A 16 VSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQ----LQDS-------DVVRIDNARVAQFNGYLSLSV 84 (106)
T ss_dssp EEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESSC----CCTT-------EEEEEEEEEEEEETTEEEEEE
T ss_pred EEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcCc----cCCC-------CEEEEEeeEEeEECCEEEEEE
Confidence 4455666555321 33 5899999999999982222 9999 999999555444677777775
Q ss_pred EEE
Q 044496 107 HKI 109 (142)
Q Consensus 107 ~K~ 109 (142)
-+.
T Consensus 85 ~~~ 87 (106)
T 2k75_A 85 GDS 87 (106)
T ss_dssp CTT
T ss_pred CCc
Confidence 543
No 29
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=92.53 E-value=0.44 Score=41.15 Aligned_cols=74 Identities=22% Similarity=0.264 Sum_probs=54.2
Q ss_pred eEEEEEEEEEeeeCCCC--cEEEEcCCeeEEEEeccc------cc-cccccCCcccccceeEEEEEeeEeeccCC--Cce
Q 044496 35 QRVWLQGVLVSPPDDDG--RLLLDDGTGVVQIYLSGD------FR-IRRWNTGVFFFDFWMYVMVVGGFVIRTDD--IPV 103 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~~~--~~~LdDgTG~~~v~~~~~------~~-~~~~~~G~~~~~~~~YVmViG~~~~~~~~--~p~ 103 (142)
+.|++.|.|.++..-++ =+.|.|+||.+++..+.. .+ -..+..| ..|.|.|.+..+... +-.
T Consensus 17 ~~V~v~G~v~~~R~~g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~-------~~v~v~G~v~~~~~~~~~~e 89 (434)
T 1x54_A 17 KKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRE-------SSVIVEGIVKADERAPGGAE 89 (434)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECHHHHCHHHHHHHHTCCTT-------CEEEEEEEEEECTTSGGGEE
T ss_pred CEEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEECCcCCHHHHHHHhcCCCC-------CEEEEEEEEEecCCCCccEE
Confidence 35899999999865444 266889999999987321 11 1258999 999999999884332 678
Q ss_pred EEEEEEeeCCCC
Q 044496 104 IKVHKIVDLSAF 115 (142)
Q Consensus 104 i~a~K~~DLS~~ 115 (142)
|.|.++.=||.+
T Consensus 90 l~~~~~~vl~~~ 101 (434)
T 1x54_A 90 VHVEKLEVIQAV 101 (434)
T ss_dssp EEEEEEEEEECC
T ss_pred EEEeEEEEeecC
Confidence 888887777754
No 30
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=92.18 E-value=0.48 Score=41.32 Aligned_cols=67 Identities=24% Similarity=0.249 Sum_probs=50.0
Q ss_pred eEEeEEEEEEEEEeee--CCC--CcEEEEcCCeeEEEEe-c--cccccc--cccCCcccccceeEEEEEeeEeeccCCCc
Q 044496 32 ILFQRVWLQGVLVSPP--DDD--GRLLLDDGTGVVQIYL-S--GDFRIR--RWNTGVFFFDFWMYVMVVGGFVIRTDDIP 102 (142)
Q Consensus 32 l~~~~VWlQG~vv~~~--~~~--~~~~LdDgTG~~~v~~-~--~~~~~~--~~~~G~~~~~~~~YVmViG~~~~~~~~~p 102 (142)
...+.+|+.|+|.+.+ ..+ .-|.|.|++|.+.|-- . +.++.. .+.+| +.|.|.|.+.. +
T Consensus 282 ~~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~~~i~c~ayeptk~fr~~vr~L~~G-------D~V~v~G~v~~--g--- 349 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKG-------DVVEVYGSMKK--D--- 349 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEETTTEEEEEEEETTEEEEEEECGGGTTHHHHHTTCCTT-------CEEEEEEEEET--T---
T ss_pred ccCceEEEEEEEecCcEeccCceEEEEEEcCCCEEEEEEEccchHHHHHHhcCCCC-------CEEEEEEeecC--C---
Confidence 4578999999999882 223 4899999999998874 2 344432 48999 99999999855 2
Q ss_pred eEEEEEEe
Q 044496 103 VIKVHKIV 110 (142)
Q Consensus 103 ~i~a~K~~ 110 (142)
.|.+-|+-
T Consensus 350 tLnvEk~~ 357 (402)
T 3au7_A 350 TINLEKIQ 357 (402)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 77766654
No 31
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=87.14 E-value=2.2 Score=38.87 Aligned_cols=73 Identities=27% Similarity=0.217 Sum_probs=51.5
Q ss_pred eEEEEEEEEEeeeCCCCcEEEEcCCeeEEEEeccccc-------cccccCCcccccceeEEEEEeeEeeccC--------
Q 044496 35 QRVWLQGVLVSPPDDDGRLLLDDGTGVVQIYLSGDFR-------IRRWNTGVFFFDFWMYVMVVGGFVIRTD-------- 99 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~~~~~~LdDgTG~~~v~~~~~~~-------~~~~~~G~~~~~~~~YVmViG~~~~~~~-------- 99 (142)
+.|.+.|.|-.... .-=+.|.|+||.+++..+.... ...+..| ..|.|-|.+.++..
T Consensus 25 ~~V~l~GwV~~~R~-~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~l~~e-------~~V~V~G~v~~~~~~~~n~~~~ 96 (617)
T 4ah6_A 25 QEVTLCGWIQYRRQ-NTFLVLRDFDGLVQVIIPQDESAASVKKILCEAPVE-------SVVQVSGTVISRPAGQENPKMP 96 (617)
T ss_dssp CEEEEEEEECCCCT-TTEEEEECSSCEEEEECCCSSSSHHHHHHHHHCCSS-------CEEEEEEEEEECSTTCCCTTST
T ss_pred CEEEEEEEeeeecC-eEEEEEEeCCcCEEEEEeCCcCcHHHHHHHhcCCCC-------CEEEEEEEEEeCCccccCccCC
Confidence 47899999998742 3345699999999998743211 1248899 99999999986321
Q ss_pred -CCceEEEEEEeeCCCC
Q 044496 100 -DIPVIKVHKIVDLSAF 115 (142)
Q Consensus 100 -~~p~i~a~K~~DLS~~ 115 (142)
.+-.|+|.++.=||.+
T Consensus 97 tgeiEl~~~~i~vL~~a 113 (617)
T 4ah6_A 97 TGEIEIKVKTAELLNAC 113 (617)
T ss_dssp TTTEEEEEEEEEEEECB
T ss_pred CCcEEEEEeEEEEeecC
Confidence 2457777766656553
No 32
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=85.78 E-value=5.6 Score=35.21 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=28.7
Q ss_pred CCCcEEEEcCCeeEEEEeccccccccccCCcccccceeEEEEEeeEe
Q 044496 49 DDGRLLLDDGTGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFV 95 (142)
Q Consensus 49 ~~~~~~LdDgTG~~~v~~~~~~~~~~~~~G~~~~~~~~YVmViG~~~ 95 (142)
+++.+.|-|.||++++.+. .+...+-+| .-|.|.|...
T Consensus 136 ~~D~l~LEDesGRv~L~g~--~~~~~lVTG-------~VvaV~G~~~ 173 (476)
T 3e0j_A 136 PDDELVLEDELQRIKLKGT--IDVSKLVTG-------TVLAVFGSVR 173 (476)
T ss_dssp SSCEEEEECSSCEEEEEES--CCTTTCCTT-------CEEEEEEEEC
T ss_pred CCceEEEECCCCEEEEEEE--cccccccCC-------cEEEEEEEEc
Confidence 3568999999999999871 222347888 8888888764
No 33
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=85.74 E-value=3 Score=29.26 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=34.5
Q ss_pred cEEEEcCCeeEEEEe-ccccccccccCCcccccceeEEEEEeeEeeccCCCceEEEEE
Q 044496 52 RLLLDDGTGVVQIYL-SGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHK 108 (142)
Q Consensus 52 ~~~LdDgTG~~~v~~-~~~~~~~~~~~G~~~~~~~~YVmViG~~~~~~~~~p~i~a~K 108 (142)
.++|-|.||.+++.+ +... ..+++| ++|.+-++.....+..+.|...+
T Consensus 41 ~~~l~D~TG~I~~tlW~~~~--~~~~~G-------~vv~i~~g~v~~~~g~~qL~i~~ 89 (119)
T 1o7i_A 41 EAIVGDETGRVKLTLWGKHA--GSIKEG-------QVVKIENAWTTAFKGQVQLNAGS 89 (119)
T ss_dssp EEEEEETTEEEEEEEEGGGT--TCCCTT-------CEEEEEEEEEEEETTEEEEEECT
T ss_pred EEEEEeCCCEEEEEEECChh--hcCCCC-------CEEEEEeEEEEEeCCEEEEEECC
Confidence 689999999999988 3322 248999 99999944434366667776554
No 34
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=85.18 E-value=1.4 Score=43.20 Aligned_cols=71 Identities=15% Similarity=0.305 Sum_probs=45.6
Q ss_pred eEEEEEEEEEeeeCC---CC----cEEEEcCCeeEEEEe-ccccc-ccc-ccCCcccccceeEEEEEeeEeeccCCCceE
Q 044496 35 QRVWLQGVLVSPPDD---DG----RLLLDDGTGVVQIYL-SGDFR-IRR-WNTGVFFFDFWMYVMVVGGFVIRTDDIPVI 104 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~---~~----~~~LdDgTG~~~v~~-~~~~~-~~~-~~~G~~~~~~~~YVmViG~~~~~~~~~p~i 104 (142)
++|.+-|.|+++... .| -++|.|.||.+.+.. +...+ -+. +..| ..|.|-|.++. .+ ...+
T Consensus 1043 ~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~~~~~~~~~l~~~-------~~~~v~G~v~~-~~-~~~l 1113 (1220)
T 2hpi_A 1043 PKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYEGVSPKLKED-------IPLLVLAEVEK-GE-ELRV 1113 (1220)
T ss_dssp CEEEEEEEECCC------------CEEEEETTEEEEEC-------------CTT-------CEEEEEEEEC-------CE
T ss_pred CeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHHHHHHHHHHhccC-------CEEEEEEEEEE-CC-CcEE
Confidence 457789999988432 33 799999999999986 55443 334 8999 99999999976 34 6789
Q ss_pred EEEEEeeCCC
Q 044496 105 KVHKIVDLSA 114 (142)
Q Consensus 105 ~a~K~~DLS~ 114 (142)
.|.++.||++
T Consensus 1114 ~~~~i~~l~~ 1123 (1220)
T 2hpi_A 1114 LAQAVWTLEE 1123 (1220)
T ss_dssp EEEEEEEHHH
T ss_pred EEeeeecHHH
Confidence 9999999975
No 35
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=77.80 E-value=6.4 Score=29.54 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=37.9
Q ss_pred eEEEEEEEEEe--ee-C-C--CCcEEEEcCCeeEEEEeccccccccccCCcccccceeEEEEEeeEee
Q 044496 35 QRVWLQGVLVS--PP-D-D--DGRLLLDDGTGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVI 96 (142)
Q Consensus 35 ~~VWlQG~vv~--~~-~-~--~~~~~LdDgTG~~~v~~~~~~~~~~~~~G~~~~~~~~YVmViG~~~~ 96 (142)
+++.+-|.|+. +. + + .-+|.|.|+...+.|.+.+... --++.| .=|.+.|.+..
T Consensus 29 ~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~v~V~Y~GilP-DlFrEG-------qgVVa~G~l~~ 88 (136)
T 1sr3_A 29 QRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILP-DLFREG-------QGVVVQGELEK 88 (136)
T ss_dssp SEEEEEEEECTTTCEECSSSSEEEEEEECSSCEEEEEEESCCC-TTCCTT-------SEEEEEEEECS
T ss_pred CEEEEeeEEeCCcEEEcCCCCEEEEEEEeCCcEEEEEECCCCC-ccccCC-------CeEEEEEEECC
Confidence 46777788773 32 1 1 3489999999999999865331 127778 88999998854
No 36
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=77.35 E-value=17 Score=27.18 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=43.7
Q ss_pred eEEEEEEEEEe--ee-C-C--CCcEEEEc-CCeeEEEEeccccccccccCCcccccceeEEEEEeeEeeccCCCceEEEE
Q 044496 35 QRVWLQGVLVS--PP-D-D--DGRLLLDD-GTGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVH 107 (142)
Q Consensus 35 ~~VWlQG~vv~--~~-~-~--~~~~~LdD-gTG~~~v~~~~~~~~~~~~~G~~~~~~~~YVmViG~~~~~~~~~p~i~a~ 107 (142)
+++.+-|.|+. +. + + .-+|.|.| +...+.|.+.+... --++.| .-|.+.|.+.. .-++.|-
T Consensus 33 ~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~~v~V~Y~GilP-DlFrEG-------qgVVa~G~l~~----~g~F~A~ 100 (136)
T 1j6q_A 33 QRIRVGGMVTVGSMVRDPNSLHVQFAVHDSLGGEILVTYDDLLP-DLFREG-------QGIVAQGVLGE----DGKLAAT 100 (136)
T ss_dssp CEEEEEEEECTTCCEECTTSSCEEEEEECTTCCCEEEEECSCCT-TSCCSS-------SEEEEEEEECS----TTSEEEE
T ss_pred CEEEEeEEEeCCcEEecCCCCEEEEEEEcCCCCEEEEEECCCCC-ccccCC-------CeEEEEEEECC----CCeEEEE
Confidence 56778888863 32 1 2 35999999 88889999866431 127888 88999999854 2456666
Q ss_pred EE
Q 044496 108 KI 109 (142)
Q Consensus 108 K~ 109 (142)
++
T Consensus 101 eV 102 (136)
T 1j6q_A 101 EV 102 (136)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 37
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=73.31 E-value=15 Score=26.44 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=32.4
Q ss_pred EEEEEEeeeCCCCcEEEEcCCee-EEEEeccccccccccCCcccccceeEEEEEeeEe
Q 044496 39 LQGVLVSPPDDDGRLLLDDGTGV-VQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFV 95 (142)
Q Consensus 39 lQG~vv~~~~~~~~~~LdDgTG~-~~v~~~~~~~~~~~~~G~~~~~~~~YVmViG~~~ 95 (142)
+=|+|+++.++++..+.|-+ |. -+|.+.-.+. ..++| +||+|.-++-
T Consensus 26 IP~kVveI~~~~~~A~Vd~~-Gv~reV~l~Lv~e--~~~vG-------DyVLVHvGfA 73 (103)
T 3d3r_A 26 IPSQVVAVDNERQSVTVDTL-GVRRDVSSHLMTE--PLAIG-------DYVLIHIGFV 73 (103)
T ss_dssp CCEEEEEEETTTTEEEEEET-TEEEEEECTTBSS--CCCTT-------CEEEEEEEEE
T ss_pred cCEEEEEEeCCCCEEEEEcC-CEEEEEEEEeecC--CCCCC-------CEEEEeechh
Confidence 55889998644566777665 54 4566655542 46789 9999998883
No 38
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=70.88 E-value=9.5 Score=25.77 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=29.7
Q ss_pred EEEEEeeeCCCCcEEEEcCCeeEEEEeccccccccccCCcccccceeEEEEEeeEe
Q 044496 40 QGVLVSPPDDDGRLLLDDGTGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFV 95 (142)
Q Consensus 40 QG~vv~~~~~~~~~~LdDgTG~~~v~~~~~~~~~~~~~G~~~~~~~~YVmViG~~~ 95 (142)
=|+|+++ +++..+.|-+-.+-++++.-.+ ..++| +||+|+-++-
T Consensus 6 P~kVvei--~~~~A~vd~~Gv~r~V~l~Lv~---~~~vG-------D~VLVH~GfA 49 (75)
T 2z1c_A 6 PGKVIEV--NGPVAVVDFGGVKREVRLDLMP---DTKPG-------DWVIVHTGFA 49 (75)
T ss_dssp CEEEEEE--ETTEEEEEETTEEEEEECTTST---TCCTT-------CEEEEETTEE
T ss_pred cEEEEEE--CCCEEEEEcCCEEEEEEEEEeC---CCCCC-------CEEEEecchh
Confidence 3788888 3366666655444556655443 36789 9999998873
No 39
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=68.00 E-value=22 Score=23.73 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=41.9
Q ss_pred eEEEEEEEEEeeeCCCCcEEEEcCC--------eeEEEEeccccccccccCCcccccceeEEEEEeeEeeccCCCceEEE
Q 044496 35 QRVWLQGVLVSPPDDDGRLLLDDGT--------GVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKV 106 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~~~~~~LdDgT--------G~~~v~~~~~~~~~~~~~G~~~~~~~~YVmViG~~~~~~~~~p~i~a 106 (142)
+.+|.+|+|.+++.+.+.++|.-|- .+.............+++| +-|...=. . .+...+|..
T Consensus 6 ~~~~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~G-------d~V~F~~~--~-~~~~~~it~ 75 (80)
T 2qcp_X 6 QVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTG-------DKVAFNFV--Q-QGNLSLLQD 75 (80)
T ss_dssp CCEEEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTT-------CEEEEEEE--E-ETTEEEEEE
T ss_pred ceEEEEEEEEEEcCCCCEEEEEcCCcccCCCCceEEEEEccChhhhhcCCCC-------CEEEEEEE--E-eCCEEEEEE
Confidence 3579999999998888899998663 4555554332334469999 77765432 2 344556655
Q ss_pred EE
Q 044496 107 HK 108 (142)
Q Consensus 107 ~K 108 (142)
++
T Consensus 76 i~ 77 (80)
T 2qcp_X 76 IK 77 (80)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 40
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=66.19 E-value=24 Score=24.00 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=42.1
Q ss_pred eEEEEEEEEEeeeCCCCcEEEEcCC--------eeEEEEeccccccccccCCcccccceeEEEEEeeEeeccCCCceEEE
Q 044496 35 QRVWLQGVLVSPPDDDGRLLLDDGT--------GVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKV 106 (142)
Q Consensus 35 ~~VWlQG~vv~~~~~~~~~~LdDgT--------G~~~v~~~~~~~~~~~~~G~~~~~~~~YVmViG~~~~~~~~~p~i~a 106 (142)
+.+|.+|+|.++..+.+.++|.-|- .+.............+++| +-|...=. . .+...+|..
T Consensus 14 ~~~~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~G-------d~V~F~~~--~-~~~~~~it~ 83 (88)
T 2vb2_X 14 QVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTG-------DKVAFNFV--Q-QGNLSLLQD 83 (88)
T ss_dssp CCEEEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTT-------CEEEEEEE--E-ETTEEEEEE
T ss_pred ceeEEEEEEEEEcCCCCEEEEecCCcccCCCCceEEEEEcCChhhhhcCCCC-------CEEEEEEE--E-eCCEEEEEE
Confidence 4579999999998888899998653 4555554332334469999 87765432 2 344556655
Q ss_pred EE
Q 044496 107 HK 108 (142)
Q Consensus 107 ~K 108 (142)
++
T Consensus 84 i~ 85 (88)
T 2vb2_X 84 IK 85 (88)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 41
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=65.41 E-value=28 Score=25.98 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=34.1
Q ss_pred cEEEEcCCeeEEEEeccccccccccCCcccccceeEEEEEeeEeeccCCCceEEEEE
Q 044496 52 RLLLDDGTGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIKVHK 108 (142)
Q Consensus 52 ~~~LdDgTG~~~v~~~~~~~~~~~~~G~~~~~~~~YVmViG~~~~~~~~~p~i~a~K 108 (142)
.+++-|.||++.+.+=.+. ...+++| +-|.+.+.+.......+.|.+-|
T Consensus 65 ~~lVgDeTG~I~ftlW~e~-~~~l~~G-------d~v~i~na~v~~~~G~~~L~vgk 113 (145)
T 1wjj_A 65 ECLIGDETGCILFTARNDQ-VDLMKPG-------ATVILRNSRIDMFKGTMRLGVDK 113 (145)
T ss_dssp EEEEECSSCEEEEEECTTH-HHHTCTT-------CEEEEEEEEEEEETTEEEEEECT
T ss_pred EEEEEcCCcEEEEEEecCC-cCcCCCC-------CEEEEeccEEEeECCEEEEEECC
Confidence 3899999999999983321 1137899 88888887665455556665543
No 42
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=61.29 E-value=13 Score=24.15 Aligned_cols=44 Identities=30% Similarity=0.363 Sum_probs=30.7
Q ss_pred EEEEEEeeeCCCCcEEEEcCCe-eEEEEeccccccc--cccCCcccccceeEEEE
Q 044496 39 LQGVLVSPPDDDGRLLLDDGTG-VVQIYLSGDFRIR--RWNTGVFFFDFWMYVMV 90 (142)
Q Consensus 39 lQG~vv~~~~~~~~~~LdDgTG-~~~v~~~~~~~~~--~~~~G~~~~~~~~YVmV 90 (142)
|+|+|++. -+++.+.+....| .+.+..++-++.+ .+.+| ++|.+
T Consensus 8 ~~G~Vi~~-lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vG-------D~V~v 54 (71)
T 1ah9_A 8 MQGTVLET-LPNTMFRVELENGHVVTAHISGKMRKNYIRILTG-------DKVTV 54 (71)
T ss_dssp CCEEEEEE-CSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTT-------CEECC
T ss_pred EEEEEEEE-eCCcEEEEEECCCCEEEEEEcceEeccCccCCCC-------CEEEE
Confidence 68999986 3557777654444 5667777777654 46799 99865
No 43
>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A
Probab=59.12 E-value=48 Score=23.99 Aligned_cols=80 Identities=19% Similarity=0.195 Sum_probs=55.0
Q ss_pred hHHHHHHHHHhhccCCCCCCceeecCeEEeEEEEEEEEEeeeCCCCcEEEEcCCeeEEEEeccccccccccCCcccccce
Q 044496 6 AALKLLCVQLKDARESPSQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGVVQIYLSGDFRIRRWNTGVFFFDFW 85 (142)
Q Consensus 6 pa~Kvf~~QL~~a~~~~s~~~~~l~gl~~~~VWlQG~vv~~~~~~~~~~LdDgTG~~~v~~~~~~~~~~~~~G~~~~~~~ 85 (142)
|+--+|++||..+.... .|.-=|=|.+=. .+.++|-++.-++.+..+-.-..-..+.|
T Consensus 6 ps~L~~Ls~lp~~~~G~-------------KVRFLGCV~sY~--tg~L~Le~~~~~v~VDV~lvL~~l~~~vG------- 63 (105)
T 3kf6_B 6 SAKLIFINQINDCKDGQ-------------KLRFLGCVQSYK--NGILRLIDGSSSVTCDVTVVLPDVSIQKH------- 63 (105)
T ss_dssp CCEECCGGGGGGSCTTC-------------EEEEEEEEEEEE--TTEEEEEETTEEEEEECTTSCCSSCCCTT-------
T ss_pred cceEeehhhccCCCCCC-------------EEEEEEEeeeec--cEEEEEccCCcEEEEEHHHhhchheeecc-------
Confidence 33345667777664432 244556666654 78888887766677776555443489999
Q ss_pred eEEEEEeeEeeccCCCceEEEEEEee
Q 044496 86 MYVMVVGGFVIRTDDIPVIKVHKIVD 111 (142)
Q Consensus 86 ~YVmViG~~~~~~~~~p~i~a~K~~D 111 (142)
.+|-|+|.+++ ...++|+-+-+
T Consensus 64 eWvNVvGYir~----~v~VqAl~lws 85 (105)
T 3kf6_B 64 EWLNIVGRKRQ----DGIVDVLLIRS 85 (105)
T ss_dssp CEEEEEEEEEE----TTEEEEEEEEE
T ss_pred cEEEEEEEEec----CcEEEEEEEee
Confidence 99999999987 36777776654
No 44
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=57.86 E-value=30 Score=24.06 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=30.6
Q ss_pred EEEEEEeeeCCCCcEEEEcCCeeEEEEeccc--cccc-cccCCcccccceeEEEEEeeEe
Q 044496 39 LQGVLVSPPDDDGRLLLDDGTGVVQIYLSGD--FRIR-RWNTGVFFFDFWMYVMVVGGFV 95 (142)
Q Consensus 39 lQG~vv~~~~~~~~~~LdDgTG~~~v~~~~~--~~~~-~~~~G~~~~~~~~YVmViG~~~ 95 (142)
+=|+|+++.+ +..+.|-+-.+=+|++.-. .... ..++| +||+|+-++-
T Consensus 5 IP~kVvei~~--~~A~Vd~~Gv~r~V~l~Lv~~~~~~~~~~vG-------D~VLVH~GfA 55 (90)
T 2ot2_A 5 VPGQIRTIDG--NQAKVDVCGIQRDVDLTLVGSCDENGQPRVG-------QWVLVHVGFA 55 (90)
T ss_dssp EEEEEEEECS--SEEEEECSSSEEEEECTTTCSBCTTSCBCTT-------CEEEEETTEE
T ss_pred cceEEEEEcC--CcEEEEcCCeEEEEEEeeeeccCCCCCCCCC-------CEEEEecChh
Confidence 4588999843 3466655543445666544 2122 37899 9999998873
No 45
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=55.17 E-value=16 Score=25.41 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=33.6
Q ss_pred EEEEEEEEEeeeC--------CCC---cEEEEcCCeeEEEEecccc--cccc-ccCCcccccceeEEEEEeeEee
Q 044496 36 RVWLQGVLVSPPD--------DDG---RLLLDDGTGVVQIYLSGDF--RIRR-WNTGVFFFDFWMYVMVVGGFVI 96 (142)
Q Consensus 36 ~VWlQG~vv~~~~--------~~~---~~~LdDgTG~~~v~~~~~~--~~~~-~~~G~~~~~~~~YVmViG~~~~ 96 (142)
+..+.|+|+++.+ ++| ++.|-|.||.+++..-++. +-.+ ++.| +-+.+-+.-..
T Consensus 16 ~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~~f~~~l~eG-------~vy~Is~~~V~ 83 (114)
T 1ynx_A 16 VWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEG-------KVYYVSKAKLQ 83 (114)
T ss_dssp CCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTEEEEEEECHHHHHHHHHHSCSS-------SEEEEESCEEE
T ss_pred ceEEEEEEEEeccceEEecCCCCceEEEEEEECCCCeEEEEECHHHHHHHHhhcccC-------cEEEECCcEEE
Confidence 4557777776532 122 7789999998888873322 2223 8999 66666664443
No 46
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=54.27 E-value=52 Score=22.91 Aligned_cols=64 Identities=22% Similarity=0.370 Sum_probs=42.7
Q ss_pred eEEEEEEEEEee----eCC--CCcEEEEcC---CeeEEEEeccccccccccCCcccccceeEEEEEeeEeeccCCCceEE
Q 044496 35 QRVWLQGVLVSP----PDD--DGRLLLDDG---TGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIPVIK 105 (142)
Q Consensus 35 ~~VWlQG~vv~~----~~~--~~~~~LdDg---TG~~~v~~~~~~~~~~~~~G~~~~~~~~YVmViG~~~~~~~~~p~i~ 105 (142)
+++.+-|.|..= .++ .-+|.|.|+ ...+.|.+.+... --++.| .-|.+.|.+.. ...++.
T Consensus 9 ~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~~~~v~V~Y~GilP-DlFrEG-------qgVV~~G~l~~---~~g~F~ 77 (94)
T 2kct_A 9 HTVRLFGTVAADGLTMLDGAPGVRFRLEDKDNTSKTVWVLYKGAVP-DTFKPG-------VEVIIEGGLAP---GEDTFK 77 (94)
T ss_dssp CCEEEEEEECSTTCEECTTSSEEEEEEECSSCTTCEEEEEEESCCC-TTCCTT-------CEEEEEEEECT---TCSEEE
T ss_pred CeEEEeeEEeCCeEEecCCCCEEEEEEEcCCCCCcEEEEEECCCCC-ccccCC-------CeEEEEEEEeC---CCCEEE
Confidence 345667777532 111 349999999 8889999866431 027889 88999998842 134677
Q ss_pred EEEE
Q 044496 106 VHKI 109 (142)
Q Consensus 106 a~K~ 109 (142)
|-++
T Consensus 78 A~ev 81 (94)
T 2kct_A 78 ARTL 81 (94)
T ss_dssp EEEE
T ss_pred EeEE
Confidence 7765
No 47
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=50.79 E-value=21 Score=27.27 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=34.6
Q ss_pred eEEEEEEEEEeeeC--------CCC---cEEEEcCCeeEEEEecccc--cccc-ccCCcccccceeEEEEEeeE
Q 044496 35 QRVWLQGVLVSPPD--------DDG---RLLLDDGTGVVQIYLSGDF--RIRR-WNTGVFFFDFWMYVMVVGGF 94 (142)
Q Consensus 35 ~~VWlQG~vv~~~~--------~~~---~~~LdDgTG~~~v~~~~~~--~~~~-~~~G~~~~~~~~YVmViG~~ 94 (142)
++..+.|+|+++.+ +++ ++.|-|.||.+++..-+.. +-.+ ++.| +.+.+-+.-
T Consensus 19 ~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~~~~~~l~~G-------~vy~i~~~~ 85 (246)
T 1jmc_A 19 SKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVN-------KVYYFSKGT 85 (246)
T ss_dssp CCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEEHHHHHHHGGGCCTT-------CEEEEECCE
T ss_pred CceEEEEEEEEecccceeeCCCCCceEEEEEEECCCCeEEEEEChHHHHHhhhhcccC-------CEEEECCCE
Confidence 45678899998743 123 7899999998888873322 1123 8888 666555543
No 48
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=44.74 E-value=43 Score=22.69 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=31.3
Q ss_pred EEEEEEEeeeCCCCcEEEEcCCe-eEEEEecccccc-c-cccCCcccccceeEEEE
Q 044496 38 WLQGVLVSPPDDDGRLLLDDGTG-VVQIYLSGDFRI-R-RWNTGVFFFDFWMYVMV 90 (142)
Q Consensus 38 WlQG~vv~~~~~~~~~~LdDgTG-~~~v~~~~~~~~-~-~~~~G~~~~~~~~YVmV 90 (142)
=|+|+|++.- +++.+.+....| .+.+..++-.+. + .+.+| +.|.|
T Consensus 15 e~~G~Vik~l-~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~G-------D~V~v 62 (79)
T 3i4o_A 15 EVEGRVVEPL-PNAMFRIELENGHKVLAHISGKMRQHYIRILPE-------DRVVV 62 (79)
T ss_dssp EEEEEEEEEE-TTTEEEEEETTSCEEEEEECHHHHHTTCCCCTT-------CEEEE
T ss_pred EEEEEEEEEc-CCCEEEEEeCCCCEEEEEeCcceecCCccCCCC-------CEEEE
Confidence 3789999964 467676666666 456666666654 3 48999 88866
No 49
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=40.19 E-value=1e+02 Score=29.85 Aligned_cols=71 Identities=23% Similarity=0.228 Sum_probs=48.2
Q ss_pred EEeEEEEEEEEEeeeCC---CC----cEEEEcCCeeEEEEe-ccccc----cccccCCcccccceeEEEEEeeEeec-cC
Q 044496 33 LFQRVWLQGVLVSPPDD---DG----RLLLDDGTGVVQIYL-SGDFR----IRRWNTGVFFFDFWMYVMVVGGFVIR-TD 99 (142)
Q Consensus 33 ~~~~VWlQG~vv~~~~~---~~----~~~LdDgTG~~~v~~-~~~~~----~~~~~~G~~~~~~~~YVmViG~~~~~-~~ 99 (142)
+-.+|.++|.|..+... .| +|-+-|-|+.+.+.. ..... ...++.| +||.|-|.++-. ..
T Consensus 16 ~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~~~~k~f~~~~~~~~~~~~~~~g-------~~~~~~g~~~~d~~~ 88 (1041)
T 3f2b_A 16 EERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRDKEDAELMSGVKKG-------MWVKVRGSVQNDTFV 88 (1041)
T ss_dssp CEEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEECSSHHHHHHHHTCCTT-------CEEEEEEEEEEETTT
T ss_pred ccceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCCEEEEEeecccchHHHHhcCCCC-------CEEEEEEEEEeccCC
Confidence 35689999999987432 34 566779999999875 22211 1259999 999999998763 23
Q ss_pred CCceEEEEEEe
Q 044496 100 DIPVIKVHKIV 110 (142)
Q Consensus 100 ~~p~i~a~K~~ 110 (142)
.+-++.+..|.
T Consensus 89 ~~~~~~~~~~~ 99 (1041)
T 3f2b_A 89 RDLVIIANDLN 99 (1041)
T ss_dssp TEEEEEEEEEE
T ss_pred cceEEEeeeeE
Confidence 34555554443
No 50
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=36.53 E-value=62 Score=24.54 Aligned_cols=74 Identities=22% Similarity=0.135 Sum_probs=43.4
Q ss_pred EEEEEEEEeeeCC-------CC------cEEEEcCCee-EEEEe-ccccccccccCCcccccceeEEEEEeeEeeccCCC
Q 044496 37 VWLQGVLVSPPDD-------DG------RLLLDDGTGV-VQIYL-SGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDI 101 (142)
Q Consensus 37 VWlQG~vv~~~~~-------~~------~~~LdDgTG~-~~v~~-~~~~~~~~~~~G~~~~~~~~YVmViG~~~~~~~~~ 101 (142)
|=+.|+|+++.+- +| .+.|.|.||. +++.+ ......-..+.| ..|.+.|.-.... ..
T Consensus 141 vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~sg~~i~~tLWg~~a~~~~~~~~-------~vv~i~~~~v~~f-~g 212 (246)
T 1jmc_A 141 VDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ-------PVLAIKGARVSDF-GG 212 (246)
T ss_dssp EEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCCEEEEEEEHHHHHHCCCTTC-------CEEEEEEEEEECT-TS
T ss_pred eeEEEEEEEecCeEEEEEecCCCccEEEEEEEECCCCCEEEEEEEchhhhhcccCCC-------CEEEEEEEEEEec-CC
Confidence 5578999987431 23 6889999995 99998 222221235778 7777777655534 34
Q ss_pred ceEEEEEEeeCCCCcCc
Q 044496 102 PVIKVHKIVDLSAFPDR 118 (142)
Q Consensus 102 p~i~a~K~~DLS~~p~r 118 (142)
..+.+..-+.+.-+|+-
T Consensus 213 ~~ls~~~~s~i~inpd~ 229 (246)
T 1jmc_A 213 RSLSVLSSSTIIANPDI 229 (246)
T ss_dssp SEEECCSSCEEESSCCS
T ss_pred eEEEecCcceEEECCCC
Confidence 55544333333335543
No 51
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.42 E-value=1.2e+02 Score=21.67 Aligned_cols=45 Identities=9% Similarity=0.145 Sum_probs=31.9
Q ss_pred EEEEEEeeeCCCCcEEEEcCCeeEE-EEeccccccc-cccCCcccccceeEEEEE
Q 044496 39 LQGVLVSPPDDDGRLLLDDGTGVVQ-IYLSGDFRIR-RWNTGVFFFDFWMYVMVV 91 (142)
Q Consensus 39 lQG~vv~~~~~~~~~~LdDgTG~~~-v~~~~~~~~~-~~~~G~~~~~~~~YVmVi 91 (142)
+.|+|++. -+++.|.+....|.-. +..++-+|.+ .+++| +||.|-
T Consensus 17 ~~g~V~~~-lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~G-------D~VlVe 63 (111)
T 2dgy_A 17 QIVRVLRT-PGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG-------DFLIVD 63 (111)
T ss_dssp EEEEEEEC-CSSSEEEEECTTSCEEEEECCTTCCSCCCCCSS-------CEEEEE
T ss_pred EEEEEEEe-CCCCEEEEEeCCCCEEEEEechhhcccEEEcCC-------CEEEEE
Confidence 57888885 4677888777777633 4456666644 47999 999875
No 52
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1
Probab=31.46 E-value=4 Score=32.45 Aligned_cols=41 Identities=32% Similarity=0.308 Sum_probs=30.1
Q ss_pred eEEEEEeeEeeccCCCceEEEEEEeeCCCCcCccchhHHHHHH
Q 044496 86 MYVMVVGGFVIRTDDIPVIKVHKIVDLSAFPDREAMWYLEVME 128 (142)
Q Consensus 86 ~YVmViG~~~~~~~~~p~i~a~K~~DLS~~p~re~mW~lEV~e 128 (142)
-|.+.+|+--+--+ -+|+-++++..-+--..|++|.+||+|
T Consensus 134 vYl~avGGaaalla--~~Ik~v~~v~~~dLGMpEAi~~leVed 174 (192)
T 2isb_A 134 AYFAFTGGAGALAA--MSIKKVKGVVWEDLGMPEAVWLLEVER 174 (192)
T ss_dssp EEEEECSCSSTTGG--GGEEEEEEEECGGGCTTTSEEEEEEEE
T ss_pred EEEEcCcHHHHHHH--hheeEEEEEeeccCCCccEEEEEEEEe
Confidence 89999987644222 578888888876522359999999976
No 53
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=31.22 E-value=17 Score=33.53 Aligned_cols=54 Identities=26% Similarity=0.257 Sum_probs=38.0
Q ss_pred EEEEEEEEEeeeC--CCC----cEEEEcCCeeEEEEe-ccccccccccC--CcccccceeEEEEEeeEee
Q 044496 36 RVWLQGVLVSPPD--DDG----RLLLDDGTGVVQIYL-SGDFRIRRWNT--GVFFFDFWMYVMVVGGFVI 96 (142)
Q Consensus 36 ~VWlQG~vv~~~~--~~~----~~~LdDgTG~~~v~~-~~~~~~~~~~~--G~~~~~~~~YVmViG~~~~ 96 (142)
.|.++|+|.+... .++ .+.+.|+||.+++.. +...-.+.+++ | .-+++.|.+..
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~~~~~~~~~~~g-------~~~~~~G~~~~ 229 (780)
T 1gm5_A 167 KVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQDYLQTYLKQLTG-------KEVFVTGTVKS 229 (780)
T ss_dssp CCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCCTTHHHHHTTCS-------SCEEEEEEECS
T ss_pred EEEEEEEEEEEEeecCCCCeEEEEEEEECCceEEEEEECcHHHHhhCccCCC-------CEEEEEEEEEE
Confidence 6778999987632 122 467889999988875 42222234778 9 99999999965
No 54
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=31.11 E-value=12 Score=24.37 Aligned_cols=43 Identities=28% Similarity=0.465 Sum_probs=27.8
Q ss_pred EEEEEEeeeCCCCcEEE--EcCCeeEEEEecccccc-c-cccCCcccccceeEEEE
Q 044496 39 LQGVLVSPPDDDGRLLL--DDGTGVVQIYLSGDFRI-R-RWNTGVFFFDFWMYVMV 90 (142)
Q Consensus 39 lQG~vv~~~~~~~~~~L--dDgTG~~~v~~~~~~~~-~-~~~~G~~~~~~~~YVmV 90 (142)
|+|+|++.. +++.+.+ +|| ..+.+..++-+|. + .+.+| ++|.+
T Consensus 9 ~~G~Vi~~l-g~~~y~V~~~~g-~~~~~~i~Gk~Rk~~i~i~~G-------D~V~v 55 (71)
T 1hr0_W 9 TEGVVTEAL-PNATFRVKLDSG-PEILAYISGKMRMHYIRILPG-------DRVVV 55 (71)
T ss_dssp CEEECCCCC-TTTBCCCEESSS-CBCCCEECHHHHHTCCCCCTT-------CEEEE
T ss_pred EEEEEEEEe-CCcEEEEEECCC-CEEEEEEcceEeccCcCCCCC-------CEEEE
Confidence 589999863 4455554 444 3455666666663 3 47799 99975
No 55
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=27.55 E-value=81 Score=22.22 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=29.5
Q ss_pred EEEEEEeeeCCCCcEEEEcCCee-EEEEeccccccc-cccCCcccccceeEEEEE
Q 044496 39 LQGVLVSPPDDDGRLLLDDGTGV-VQIYLSGDFRIR-RWNTGVFFFDFWMYVMVV 91 (142)
Q Consensus 39 lQG~vv~~~~~~~~~~LdDgTG~-~~v~~~~~~~~~-~~~~G~~~~~~~~YVmVi 91 (142)
+.|+|++. -+++.|.+....|. +.+..++-++.+ .+++| +||.|-
T Consensus 22 ~~g~V~~~-lgn~~~~V~l~nG~~~la~i~GKmRk~IwI~~G-------D~VlVe 68 (102)
T 1jt8_A 22 ILGIIEQM-LGASRVRVRCLDGKTRLGRIPGRLKNRIWVREG-------DVVIVK 68 (102)
T ss_dssp EEEEEECS-SCSSEEEEEEETTEEEEEECCHHHHHHHCCCSC-------EEEEEC
T ss_pred EEEEEEEE-cCCCEEEEEECCCCEEEEEEcccceeeEEecCC-------CEEEEE
Confidence 78999996 46776665444444 444456655544 47999 999773
No 56
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}
Probab=25.92 E-value=52 Score=22.96 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=31.7
Q ss_pred CCCcEEEEcCCeeEEEEeccccccccccCCcccccceeEEEEEeeEeeccCCCc-eEEEEEEeeCCCCc
Q 044496 49 DDGRLLLDDGTGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDDIP-VIKVHKIVDLSAFP 116 (142)
Q Consensus 49 ~~~~~~LdDgTG~~~v~~~~~~~~~~~~~G~~~~~~~~YVmViG~~~~~~~~~p-~i~a~K~~DLS~~p 116 (142)
..+.|.+|-.||.+.+...-|++...-+.. .|...+-.. . .+|.- +-..++|.|..+|+
T Consensus 53 ~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~-------~y~l~v~a~-~-~~p~~~~~V~I~V~DvNDN~ 112 (125)
T 1wyj_A 53 NKQLLQLEQKSGNLLLKEKLDREELCGSTN-------PCILHFQVL-L-KSPVQFIQGEIQLQDVNDHA 112 (125)
T ss_dssp SSCSEEECSSSSEEEESSCCCSTTTCTTCS-------SCCBCCEEE-E-TTTTEEECCCEEECCCCCCC
T ss_pred CCCeEEEECCccEEEECccccchhhcccCC-------cEEEEEEEE-E-CCCCeEEEEEEEEEEccCCC
Confidence 356789998999988876555443311222 332211111 1 12211 12268899999863
No 57
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=25.91 E-value=2.1e+02 Score=21.39 Aligned_cols=45 Identities=22% Similarity=0.158 Sum_probs=31.4
Q ss_pred EEEEEEeeeCCCCcEEEEcCCee-EEEEeccccccc-cccCCcccccceeEEEEE
Q 044496 39 LQGVLVSPPDDDGRLLLDDGTGV-VQIYLSGDFRIR-RWNTGVFFFDFWMYVMVV 91 (142)
Q Consensus 39 lQG~vv~~~~~~~~~~LdDgTG~-~~v~~~~~~~~~-~~~~G~~~~~~~~YVmVi 91 (142)
+.|+|++. -+++.|.+.-..|. +.+..++-++.+ .+.+| +||.|-
T Consensus 33 ~~g~V~e~-lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~G-------D~VlVe 79 (143)
T 1d7q_A 33 EYAQVIKM-LGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTS-------DIILVG 79 (143)
T ss_dssp EEEEEEEE-CSSSEEEEEETTTEEEEEECCSGGGGSCCCCTT-------CEEEEE
T ss_pred EEEEEEEE-cCCCEEEEEeCCCCEEEEEecccceeeEEecCC-------CEEEEe
Confidence 78999996 46777776666665 444456655555 47999 999874
No 58
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}
Probab=25.72 E-value=1.5e+02 Score=19.69 Aligned_cols=58 Identities=7% Similarity=-0.060 Sum_probs=32.3
Q ss_pred CCCcEEEEcCCeeEEEEeccccccccccCCcccccceeEEEEEeeEeeccCC-CceEEEEEEeeCCCC
Q 044496 49 DDGRLLLDDGTGVVQIYLSGDFRIRRWNTGVFFFDFWMYVMVVGGFVIRTDD-IPVIKVHKIVDLSAF 115 (142)
Q Consensus 49 ~~~~~~LdDgTG~~~v~~~~~~~~~~~~~G~~~~~~~~YVmViG~~~~~~~~-~p~i~a~K~~DLS~~ 115 (142)
..+.|.+|-.||.+.+...-|.+....... .|+..+=.+ + .+| ...-..++|.|..+|
T Consensus 45 ~~~~F~Id~~tG~i~~~~~LDRE~~~~~~~-------~~~~~~~v~-~-~~p~~~~~v~I~V~DiNDN 103 (103)
T 1wuz_A 45 RGDLLEVNLQNGILFVNSRIDREELCGRSA-------ECSIHLEVI-V-DRPLQVFHVEVEVRDINDN 103 (103)
T ss_dssp CSCSEEEETTTTEEEECSCCSHHHHCSSSS-------SCEEEEEEE-E-TTTTEEEEEEEEEECCSCC
T ss_pred CccEEEEECCeEEEEECCcCccccccCCCC-------cEEEEEEEE-E-CCCCEEEEEEEEEEEcCCC
Confidence 467899999999999886555443321222 233222212 2 222 223346788888764
No 59
>1c8c_A DNA-binding protein 7A; protein-DNA interaction, protein stability, hyperthermophIle, achaeabacteria, X-RAY crystallography; 1.45A {Sulfolobus solfataricus} SCOP: b.34.13.1 PDB: 1bnz_A 1bbx_C* 1jic_A 1sso_A 1bf4_A* 2cvr_A 1b4o_A 1azp_A* 1azq_A* 1ca5_A 1ca6_A 1sap_A 1wd0_A 1wd1_A 1wtw_A 1wtx_A 1wtq_A 1wtp_A 1wtv_A 1wtr_A ...
Probab=24.50 E-value=32 Score=22.65 Aligned_cols=25 Identities=32% Similarity=0.688 Sum_probs=17.6
Q ss_pred EeEEEEEEEEEeeeCCCCcEEEEcC---CeeEEEE
Q 044496 34 FQRVWLQGVLVSPPDDDGRLLLDDG---TGVVQIY 65 (142)
Q Consensus 34 ~~~VWlQG~vv~~~~~~~~~~LdDg---TG~~~v~ 65 (142)
+..||=.|..+| |+.||| ||+=-+.
T Consensus 20 ikkvwrvgkmis-------ftyddgngktgrgavs 47 (64)
T 1c8c_A 20 IKKVWRVGKMIS-------FTYDEGGGKTGRGAVS 47 (64)
T ss_dssp EEEEEEETTEEE-------EEEECGGGCEEEEEEE
T ss_pred HHHHHhhcceEE-------EEEecCCCcccccccc
Confidence 678999988877 678886 5554443
No 60
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=22.97 E-value=93 Score=22.10 Aligned_cols=45 Identities=24% Similarity=0.172 Sum_probs=29.7
Q ss_pred EEEEEEeeeCCCCcEEEEcCCe-eEEEEeccccccc-cccCCcccccceeEEEEE
Q 044496 39 LQGVLVSPPDDDGRLLLDDGTG-VVQIYLSGDFRIR-RWNTGVFFFDFWMYVMVV 91 (142)
Q Consensus 39 lQG~vv~~~~~~~~~~LdDgTG-~~~v~~~~~~~~~-~~~~G~~~~~~~~YVmVi 91 (142)
|.|+|++.. +++.+.+....| .+.+..++-++.+ .+.+| ++|.|-
T Consensus 34 ~~G~Vi~~l-gn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~G-------D~V~ve 80 (117)
T 2oqk_A 34 EYGQVQRML-GNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPG-------DIVLVS 80 (117)
T ss_dssp EEEEEEEEE-ETTEEEEEETTSCEEEEECCHHHHHHSCCCTT-------CEEEEE
T ss_pred EEEEEEEEc-CCCEEEEEeCCCCEEEEEEcCceecCCcCCCC-------CEEEEE
Confidence 479999964 456676644445 4556666666543 47899 999763
No 61
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=21.00 E-value=2.4e+02 Score=22.91 Aligned_cols=77 Identities=21% Similarity=0.274 Sum_probs=44.5
Q ss_pred EEEEEEe----eeCCCCcEEEEcCCe--eEEEEe--ccccccccccCCcccccceeEEEEEe-eEeeccCCCceEEEEEE
Q 044496 39 LQGVLVS----PPDDDGRLLLDDGTG--VVQIYL--SGDFRIRRWNTGVFFFDFWMYVMVVG-GFVIRTDDIPVIKVHKI 109 (142)
Q Consensus 39 lQG~vv~----~~~~~~~~~LdDgTG--~~~v~~--~~~~~~~~~~~G~~~~~~~~YVmViG-~~~~~~~~~p~i~a~K~ 109 (142)
+.|+|.. . +++.+++|-|+| ..+-.+ +....+-.+++| +.+-+.= .+.. .+..|.|.
T Consensus 11 VtG~V~r~~~~v--~~~~ViVdlG~~~~k~EgiLP~~Eqip~E~~~~G-------DrIkayV~~V~~-~~~gpqIi---- 76 (251)
T 2asb_A 11 VAGVIQRDSRAN--ARGLVVVRIGTETKASEGVIPAAEQVPGESYEHG-------NRLRCYVVGVTR-GAREPLIT---- 76 (251)
T ss_dssp EEEEEECCHHHH--HTTCEEEEECSSSSCEEEEECGGGSCTTCCCCTT-------CEEEEEEEEEEC-CSSSCEEE----
T ss_pred EEEEEEEccccc--cCCeEEEEeCCCCcceEEEEcHHHcCCCccCCCC-------CEEEEEEEEEEc-CCCCCEEE----
Confidence 6799998 5 356688888873 233333 222223358999 7774432 2322 32234332
Q ss_pred eeCCC-CcCc-cchhHHHHHHHHH
Q 044496 110 VDLSA-FPDR-EAMWYLEVMEAYK 131 (142)
Q Consensus 110 ~DLS~-~p~r-e~mW~lEV~e~~~ 131 (142)
||. .|.- +.+-++||.|.+.
T Consensus 77 --LSRt~p~lvk~Lfe~EVPEI~d 98 (251)
T 2asb_A 77 --LSRTHPNLVRKLFSLEVPEIAD 98 (251)
T ss_dssp --EESSCHHHHHHHHHHHCHHHHT
T ss_pred --EEeccHHHHHHHHHhcchHhhc
Confidence 455 3443 7888899988753
No 62
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=20.39 E-value=1.8e+02 Score=22.14 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=26.3
Q ss_pred EeEEEEEEEEEeeeCC--------CCcEEEEcCCeeEEEEecc
Q 044496 34 FQRVWLQGVLVSPPDD--------DGRLLLDDGTGVVQIYLSG 68 (142)
Q Consensus 34 ~~~VWlQG~vv~~~~~--------~~~~~LdDgTG~~~v~~~~ 68 (142)
.+.+-+.|-|+.+... .-.+.++|||+.+.+..++
T Consensus 37 ~~~~kVKafI~tl~~~l~~~~~~W~l~a~IsDGS~~LdV~f~~ 79 (157)
T 3mxn_A 37 VTTVKVKAFIVTLTGNLSSSGGIWSITAKVSDGTAYLDVDFVD 79 (157)
T ss_dssp CEEEEEEEEEEEECSCCBCGGGSCBCEEEEECSSCEEEEEECH
T ss_pred ceEEEEEEEEEEeccceeecCCEEEEEEEEeCCceeEEEEeeH
Confidence 4557788888877433 3389999999999999833
No 63
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=20.33 E-value=2e+02 Score=19.11 Aligned_cols=55 Identities=24% Similarity=0.219 Sum_probs=36.3
Q ss_pred CccchHHHHHHHHHhhccCCCCCCceeecCeEEeEEEEEEEEEeeeCCCCcEEEEcCCee-EEEEe
Q 044496 2 DYSLAALKLLCVQLKDARESPSQNAVTLGGILFQRVWLQGVLVSPPDDDGRLLLDDGTGV-VQIYL 66 (142)
Q Consensus 2 d~~~pa~Kvf~~QL~~a~~~~s~~~~~l~gl~~~~VWlQG~vv~~~~~~~~~~LdDgTG~-~~v~~ 66 (142)
|=+||.+..+=+-+|+-..-. .+-.+|.. +||+|.+- |...+.|-|..|. ..|.+
T Consensus 5 dt~lPsvR~lQ~~ik~k~~V~---I~L~tG~~-----l~G~i~WQ--D~~cl~L~~~~~~~~LI~r 60 (70)
T 3hfo_A 5 DSGLPSVRQVQLLIKDQTPVE---IKLLTGDS-----LFGTIRWQ--DTDGLGLVDDSERSTIVRL 60 (70)
T ss_dssp CCSCHHHHHHHHHHHHTCEEE---EEETTSCE-----EEEEEEEE--CSSEEEEECTTCCEEEEEG
T ss_pred cCCCCcHHHHHHHHhhCceEE---EEecCCCE-----EEEEEEEe--CCCEEEEEcCCCCeEEEEe
Confidence 678999988877777764321 33345544 78999995 6667777765554 55544
Done!