Your job contains 1 sequence.
>044498
MGTSYGECTYDKLERESHWPSGKLRISSIGVGGFIPSNIARRLKSERHYSTSIPNALYII
ASDWNKNEHMMEDMFCHEFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVI
MYKNTTISFDMLEAARMNGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGL
EKLATEGLCKHYTKDFEIECRLVGEKAPAAFSRKAVTSTDNFEMWGDGKQTRSLTFIDEC
VEGVLRLIKSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIPGPEGVRGRNSDDT
LINEELGWAPTMKQKDELRITYFWIKEQVEKEKAQGIDLSIYGSSNVVATQAPVQLGSPC
AEDDKE
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 044498
(366 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2150441 - symbol:GME ""GDP-D-mannose 3',5'-epi... 1298 2.1e-132 1
TAIR|locus:2030973 - symbol:GER2 species:3702 "Arabidopsi... 136 2.8e-11 2
ZFIN|ZDB-GENE-020419-37 - symbol:uxs1 "UDP-glucuronic aci... 166 1.5e-09 1
TAIR|locus:2197264 - symbol:GER1 ""GDP-4-keto-6-deoxymann... 125 4.3e-09 2
TIGR_CMR|BA_0507 - symbol:BA_0507 "NAD-dependent epimeras... 159 4.9e-09 1
TIGR_CMR|GSU_1815 - symbol:GSU_1815 "NAD-dependent epimer... 158 5.8e-09 1
TIGR_CMR|CJE_1513 - symbol:CJE_1513 "NAD-dependent epimer... 154 1.9e-08 1
UNIPROTKB|F1SU22 - symbol:UXS1 "Uncharacterized protein" ... 152 5.2e-08 1
UNIPROTKB|B3KV61 - symbol:UXS1 "UDP-glucuronate decarboxy... 151 5.6e-08 1
TAIR|locus:2081675 - symbol:AUD1 "AT3G62830" species:3702... 152 6.5e-08 1
UNIPROTKB|E1BMI4 - symbol:UXS1 "Uncharacterized protein" ... 151 7.6e-08 1
UNIPROTKB|Q8NBZ7 - symbol:UXS1 "UDP-glucuronic acid decar... 151 7.6e-08 1
MGI|MGI:1915133 - symbol:Uxs1 "UDP-glucuronate decarboxyl... 151 7.6e-08 1
RGD|628680 - symbol:Uxs1 "UDP-glucuronate decarboxylase 1... 151 7.6e-08 1
UNIPROTKB|Q5PQX0 - symbol:Uxs1 "UDP-glucuronic acid decar... 151 7.6e-08 1
UNIPROTKB|P32055 - symbol:fcl "Fcl" species:83333 "Escher... 117 1.2e-07 2
UNIPROTKB|E1BV28 - symbol:UXS1 "Uncharacterized protein" ... 148 1.7e-07 1
TAIR|locus:2078206 - symbol:UXS5 "UDP-XYL synthase 5" spe... 145 2.3e-07 1
UNIPROTKB|F1PU61 - symbol:UXS1 "Uncharacterized protein" ... 146 2.7e-07 1
UNIPROTKB|Q47WH1 - symbol:CPS_4200 "NAD-dependent epimera... 104 3.1e-07 2
TIGR_CMR|CPS_4200 - symbol:CPS_4200 "NAD-dependent epimer... 104 3.1e-07 2
TIGR_CMR|DET_0204 - symbol:DET_0204 "NAD-dependent epimer... 143 3.2e-07 1
WB|WBGene00005019 - symbol:sqv-1 species:6239 "Caenorhabd... 145 4.4e-07 1
TAIR|locus:2053275 - symbol:UXS6 "UDP-XYL synthase 6" spe... 137 1.9e-06 1
TAIR|locus:2168539 - symbol:UXS3 "UDP-glucuronic acid dec... 136 2.7e-06 1
WB|WBGene00018737 - symbol:F53B1.4 species:6239 "Caenorha... 128 4.7e-06 2
FB|FBgn0035848 - symbol:CG7979 species:7227 "Drosophila m... 133 8.6e-06 1
UNIPROTKB|Q83DM2 - symbol:CBU_0681 "NAD dependent epimera... 122 1.7e-05 2
TIGR_CMR|CBU_0681 - symbol:CBU_0681 "conserved hypothetic... 122 1.7e-05 2
WB|WBGene00015298 - symbol:C01F1.3 species:6239 "Caenorha... 132 1.9e-05 1
UNIPROTKB|Q6MWV3 - symbol:galE1 "UDP-glucose 4-epimerase"... 127 2.1e-05 1
TIGR_CMR|GSU_0627 - symbol:GSU_0627 "GDP-fucose synthetas... 127 2.1e-05 1
TIGR_CMR|CHY_0979 - symbol:CHY_0979 "dTDP-glucose 4,6-deh... 124 4.4e-05 1
TAIR|locus:2202960 - symbol:RHM1 "rhamnose biosynthesis 1... 125 0.00012 1
UNIPROTKB|P29782 - symbol:strE "dTDP-glucose 4,6-dehydrat... 117 0.00031 1
TIGR_CMR|GSU_1975 - symbol:GSU_1975 "NAD-dependent epimer... 114 0.00070 1
TAIR|locus:2099372 - symbol:RHM3 "rhamnose biosynthesis 3... 118 0.00072 1
UNIPROTKB|G4MX57 - symbol:MGG_08012 "UDP-glucose 4-epimer... 90 0.00084 2
TIGR_CMR|CBU_0829 - symbol:CBU_0829 "NAD dependent epimer... 113 0.00088 1
>TAIR|locus:2150441 [details] [associations]
symbol:GME ""GDP-D-mannose 3',5'-epimerase"" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009225 "nucleotide-sugar
metabolic process" evidence=ISS] [GO:0044237 "cellular metabolic
process" evidence=IEA] [GO:0050662 "coenzyme binding" evidence=IEA]
[GO:0047918 "GDP-mannose 3,5-epimerase activity" evidence=ISS;IDA]
[GO:0019853 "L-ascorbic acid biosynthetic process" evidence=TAS]
[GO:0051287 "NAD binding" evidence=TAS] [GO:0005829 "cytosol"
evidence=IDA] UniPathway:UPA00990 InterPro:IPR001509 Pfam:PF01370
InterPro:IPR016040 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR eggNOG:COG0451 Gene3D:3.40.50.720
GO:GO:0051287 GO:GO:0019853 EMBL:AF272706 EMBL:AY057660
EMBL:AY057694 EMBL:AY116953 IPI:IPI00536932 RefSeq:NP_001190417.1
RefSeq:NP_198236.1 UniGene:At.21733 PDB:2C54 PDB:2C59 PDB:2C5A
PDB:2C5E PDBsum:2C54 PDBsum:2C59 PDBsum:2C5A PDBsum:2C5E
ProteinModelPortal:Q93VR3 SMR:Q93VR3 STRING:Q93VR3 PaxDb:Q93VR3
PRIDE:Q93VR3 EnsemblPlants:AT5G28840.1 EnsemblPlants:AT5G28840.2
GeneID:833002 KEGG:ath:AT5G28840 TAIR:At5g28840
HOGENOM:HOG000168017 InParanoid:Q93VR3 KO:K10046 OMA:RKAQTST
PhylomeDB:Q93VR3 ProtClustDB:PLN02695 BioCyc:ARA:AT5G28840-MONOMER
BioCyc:MetaCyc:AT5G28840-MONOMER EvolutionaryTrace:Q93VR3
Genevestigator:Q93VR3 GermOnline:AT5G28840 GO:GO:0047918
Uniprot:Q93VR3
Length = 377
Score = 1298 (462.0 bits), Expect = 2.1e-132, P = 2.1e-132
Identities = 259/381 (67%), Positives = 295/381 (77%)
Query: 2 GTSYGECTYDKLERESHWPSGKLRISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIA 61
GT YG TY +LERE +WPS L+IS G GGFI S+IARRLK E HY +IA
Sbjct: 6 GTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHY---------VIA 56
Query: 62 SDWNKNEHMMEDMFCHEFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIM 121
SDW KNEHM EDMFC EFHLVDLRVM+NCL++T GVD++ NLAADMGGMGFIQSNHSVIM
Sbjct: 57 SDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIM 116
Query: 122 YKNTTISFDMLEAARMNGVMSLTFFFVSSACI-YPEFKQLDTDVKESEAWPAEPQDAYGL 180
Y NT ISF+M+EAAR+NG+ + + + + + + +KES+AWPAEPQDAYGL
Sbjct: 117 YNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGL 176
Query: 181 EKLATEGLCKHYTKDFEIECRL---------VG------EKAPAAFSRKAVTSTDNFEMW 225
EKLATE LCKHY KDF IECR+ G EKAPAAF RKA TSTD FEMW
Sbjct: 177 EKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMW 236
Query: 226 GDGKQTRSLTFIDECVEGVLRLIKSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHP 285
GDG QTRS TFIDECVEGVLRL KSDFREP+NIGSDEMVS+NEMAE++LSFE +KLPIH
Sbjct: 237 GDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHH 296
Query: 286 IPGPEGVRGRNSDDTLINEELGWAPTMKQKDELRITYFWIKEQVEKEKAQGIDLSIYGSS 345
IPGPEGVRGRNSD+ LI E+LGWAP M+ K+ LRITYFWIKEQ+EKEKA+G D+S+YGSS
Sbjct: 297 IPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYGSS 356
Query: 346 NVVATQAPVQLGSPCAEDDKE 366
VV TQAPVQLGS A D KE
Sbjct: 357 KVVGTQAPVQLGSLRAADGKE 377
>TAIR|locus:2030973 [details] [associations]
symbol:GER2 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0042350 "GDP-L-fucose biosynthetic process"
evidence=ISS] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0050662 "coenzyme binding" evidence=IEA]
[GO:0006857 "oligopeptide transport" evidence=RCA]
InterPro:IPR001509 Pfam:PF01370 UniPathway:UPA00128
InterPro:IPR016040 EMBL:CP002684 GenomeReviews:CT485782_GR
eggNOG:COG0451 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
EMBL:AC034106 GO:GO:0016853 HOGENOM:HOG000168011 KO:K02377
ProtClustDB:PLN02725 GO:GO:0050577 GO:GO:0042351 EMBL:AY063880
EMBL:AY096364 IPI:IPI00526329 PIR:B86314 RefSeq:NP_564040.1
UniGene:At.15825 ProteinModelPortal:Q9LMU0 SMR:Q9LMU0 STRING:Q9LMU0
PaxDb:Q9LMU0 PRIDE:Q9LMU0 EnsemblPlants:AT1G17890.1 GeneID:838368
KEGG:ath:AT1G17890 GeneFarm:5163 TAIR:At1g17890 InParanoid:Q9LMU0
OMA:IHCAGRV PhylomeDB:Q9LMU0 Genevestigator:Q9LMU0
GermOnline:AT1G17890 Uniprot:Q9LMU0
Length = 328
Score = 136 (52.9 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 38/128 (29%), Positives = 61/128 (47%)
Query: 211 FSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLIK--SDFREPLNIGSDEMVSINE 268
F + D +WG G R +D+ + + L+ S F E +N+GS V+I E
Sbjct: 204 FHEAKANNADEVVVWGSGSPLREFLHVDDLADACVFLMDQYSGF-EHVNVGSGVEVTIKE 262
Query: 269 MAEII---LSFENEKLPIHPIPGPEGVRGRNSDDTLINEELGWAPTMKQKDELRITYFWI 325
+AE++ + F+ KL + P+G + D + + LGW P + KD L TY W
Sbjct: 263 LAELVKEVVGFKG-KL-VWDTTKPDGTPRKLMDSSKL-ASLGWTPKISLKDGLSQTYEWY 319
Query: 326 KEQVEKEK 333
E V ++K
Sbjct: 320 LENVVQKK 327
Score = 86 (35.3 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 104 AADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSLTFFFVSSACIYPEFKQLDTD 163
AA +GG+ + + + N I +++ +A +GV L F+ S+CIYP+F
Sbjct: 79 AAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYTHGVKKL--LFLGSSCIYPKFAPQPIP 136
Query: 164 VKESEAWPAEPQDA-YGLEKLATEGLCKHY 192
P EP + Y + K+A +C+ Y
Sbjct: 137 ESALLTGPLEPTNEWYAIAKIAGIKMCQAY 166
>ZFIN|ZDB-GENE-020419-37 [details] [associations]
symbol:uxs1 "UDP-glucuronic acid decarboxylase 1"
species:7955 "Danio rerio" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0050662
"coenzyme binding" evidence=IEA] [GO:0051216 "cartilage
development" evidence=IMP] [GO:0001503 "ossification" evidence=IMP]
[GO:0030166 "proteoglycan biosynthetic process" evidence=IMP]
[GO:0030206 "chondroitin sulfate biosynthetic process"
evidence=IMP] [GO:0015012 "heparan sulfate proteoglycan
biosynthetic process" evidence=IGI;IMP] [GO:0030198 "extracellular
matrix organization" evidence=IGI;IMP] [GO:0050650 "chondroitin
sulfate proteoglycan biosynthetic process" evidence=IGI;IMP]
[GO:0016831 "carboxy-lyase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016829 "lyase activity" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0032580
"Golgi cisterna membrane" evidence=IEA] InterPro:IPR001509
InterPro:IPR021761 Pfam:PF01370 Pfam:PF11803 UniPathway:UPA00796
InterPro:IPR016040 ZFIN:ZDB-GENE-020419-37 GO:GO:0016021
eggNOG:COG0451 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0030198 GO:GO:0032580 GO:GO:0051216 GO:GO:0001503
GO:GO:0015012 GO:GO:0030206 GeneTree:ENSGT00530000063128
EMBL:AF506235 EMBL:BC074058 IPI:IPI00494152 RefSeq:NP_775349.1
UniGene:Dr.79684 ProteinModelPortal:Q6GMI9 SMR:Q6GMI9 STRING:Q6GMI9
Ensembl:ENSDART00000078525 GeneID:192315 KEGG:dre:192315 CTD:80146
HOGENOM:HOG000168004 HOVERGEN:HBG094144 InParanoid:Q6GMI9 KO:K08678
OrthoDB:EOG4ZW5B0 NextBio:20797152 ArrayExpress:Q6GMI9 Bgee:Q6GMI9
GO:GO:0048040 GO:GO:0033320 Uniprot:Q6GMI9
Length = 418
Score = 166 (63.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 77/325 (23%), Positives = 139/325 (42%)
Query: 25 RISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHE-FHLVD 83
RI G GF+ S++ +L + H T + N + N EH + HE F L++
Sbjct: 88 RILITGGAGFVGSHLTDKLMMDGHEVTVVDN--FFTGRKRNV-EHWIG----HENFELIN 140
Query: 84 LRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSL 143
V++ + VD + +LA+ ++ N + NT + +ML A+ G L
Sbjct: 141 HDVVEP---LYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGARLL 196
Query: 144 TFFFVSSACIY--PEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIECR 201
S++ +Y PE + D P P+ Y K E +C Y K +E R
Sbjct: 197 ---LASTSEVYGDPEVHPQNEDYW-GHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVR 252
Query: 202 LV------GEK-------APAAFSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLI 248
+ G + + F +A+ + ++G G QTR+ ++ + V G++ L+
Sbjct: 253 VARIFNTFGSRMHMNDGRVVSNFILQALQG-EALTVYGSGSQTRAFQYVSDLVNGLVSLM 311
Query: 249 KSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIP-GPEGVRGRNSDDTLINEELG 307
S+ P+N+G+ E +I E A++I S + I +P + + R D LG
Sbjct: 312 NSNISSPVNLGNPEEHTILEFAQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLG 371
Query: 308 WAPTMKQKDELRITYFWIKEQVEKE 332
W P + ++ L T + ++E +
Sbjct: 372 WEPVVPLEEGLNKTIQYFSRELEHQ 396
>TAIR|locus:2197264 [details] [associations]
symbol:GER1
""GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1""
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0050662 "coenzyme
binding" evidence=IEA] [GO:0006005 "L-fucose biosynthetic process"
evidence=IDA] [GO:0019853 "L-ascorbic acid biosynthetic process"
evidence=IMP] [GO:0050577 "GDP-L-fucose synthase activity"
evidence=IDA] InterPro:IPR001509 Pfam:PF01370 UniPathway:UPA00128
InterPro:IPR016040 EMBL:CP002684 GenomeReviews:CT485782_GR
eggNOG:COG0451 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0016853 EMBL:AC010556 EMBL:AK228837 EMBL:BT029480
EMBL:AF045286 EMBL:AB034806 IPI:IPI00540212 PIR:F96758
RefSeq:NP_177468.2 UniGene:At.1531 ProteinModelPortal:O49213
SMR:O49213 STRING:O49213 PaxDb:O49213 PRIDE:O49213
EnsemblPlants:AT1G73250.1 GeneID:843659 KEGG:ath:AT1G73250
GeneFarm:5162 TAIR:At1g73250 HOGENOM:HOG000168011 InParanoid:O49213
KO:K02377 OMA:DFISAMP ProtClustDB:PLN02725
BioCyc:ARA:AT1G73250-MONOMER BioCyc:MetaCyc:AT1G73250-MONOMER
Genevestigator:O49213 GermOnline:AT1G73250 GO:GO:0050577
GO:GO:0042351 GO:GO:0006005 Uniprot:O49213
Length = 323
Score = 125 (49.1 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 35/123 (28%), Positives = 57/123 (46%)
Query: 211 FSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLI-KSDFREPLNIGSDEMVSINEM 269
F V + +WG G R +D+ + + L+ + E +NIGS + V+I E+
Sbjct: 201 FHEAKVNGAEEVVVWGTGSPLREFLHVDDLADACVFLLDRYSGLEHVNIGSGQEVTIREL 260
Query: 270 AEII---LSFENEKLPIHPIPGPEGVRGRNSDDTLINEELGWAPTMKQKDELRITYFWIK 326
AE++ + FE KL P+G + D + + LGW P + +D L TY W
Sbjct: 261 AELVKEVVGFEG-KLG-WDCTKPDGTPRKLMDSSKL-ASLGWTPKVSLRDGLSQTYDWYL 317
Query: 327 EQV 329
+ V
Sbjct: 318 KNV 320
Score = 77 (32.2 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 27/92 (29%), Positives = 45/92 (48%)
Query: 104 AADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSLTFFFVSSACIYPEFKQLDTD 163
AA +GG+ + + + N I +++ +A +GV L F+ S+CIYP+F
Sbjct: 76 AAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYEHGVKKL--LFLGSSCIYPKFAP--QP 131
Query: 164 VKESEAWPA--EPQDA-YGLEKLATEGLCKHY 192
+ ES A EP + Y + K+A C+ Y
Sbjct: 132 IPESALLTASLEPTNEWYAIAKIAGIKTCQAY 163
>TIGR_CMR|BA_0507 [details] [associations]
symbol:BA_0507 "NAD-dependent epimerase/dehydratase family
protein" species:198094 "Bacillus anthracis str. Ames" [GO:0000271
"polysaccharide biosynthetic process" evidence=ISS] [GO:0003824
"catalytic activity" evidence=ISS] InterPro:IPR001509 Pfam:PF01370
InterPro:IPR016040 GO:GO:0003824 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0044237 KO:K01784
HOGENOM:HOG000168004 HSSP:P32054 RefSeq:NP_843043.1
RefSeq:YP_017126.1 RefSeq:YP_026759.1 ProteinModelPortal:Q81YX3
DNASU:1087740 EnsemblBacteria:EBBACT00000010883
EnsemblBacteria:EBBACT00000018378 EnsemblBacteria:EBBACT00000021242
GeneID:1087740 GeneID:2816749 GeneID:2850006 KEGG:ban:BA_0507
KEGG:bar:GBAA_0507 KEGG:bat:BAS0479 OMA:IRWSYAV
ProtClustDB:CLSK915839 BioCyc:BANT260799:GJAJ-522-MONOMER
BioCyc:BANT261594:GJ7F-544-MONOMER Uniprot:Q81YX3
Length = 321
Score = 159 (61.0 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 77/322 (23%), Positives = 144/322 (44%)
Query: 30 GVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHEFHLVDLRVMD- 88
G GFI S++A L R Y+ +I + Y K ++ D E ++ + V+D
Sbjct: 9 GGAGFIGSHLAEELVG-RGYNVTIVDNFY-------KGKNKYHDELMKEIRVIPISVLDK 60
Query: 89 NCL-RMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSLTFFF 147
N + + + D + +LAA +G ++ + +I N + ++L+AA + G + F
Sbjct: 61 NSIYELVNQHDVVFHLAAILGVKTTMEKSIELIE-TNFDGTRNILQAA-LKGKKKVVF-- 116
Query: 148 VSSACIYPEFKQ-LDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKD-FEIEC----R 201
S++ +Y + K + ++ + +Y + K E LC Y + +
Sbjct: 117 ASTSEVYGKAKPPFSEEGDRLYGATSKIRWSYAICKTLEETLCLGYALEGLPVTIVRYFN 176
Query: 202 LVGEKA---PAA--FSR--KAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLIKSDFR- 253
+ G +A P A R A ++ ++GDG+QTR T++ + VE +R +
Sbjct: 177 IYGPRAKDGPYAGVIPRFISAALQGEDILVYGDGEQTRCFTYVSDAVEATIRAMDEKVNG 236
Query: 254 EPLNIGSDEMVSINEMAEIILSFENEKLPIHPIP-------GPEGVRGRNSDDTLINEEL 306
E +NIGS+ SI E+AE+I + I +P G E + R D T + + +
Sbjct: 237 EIINIGSENEKSIKEVAEVIKKLTDSSSKIVQVPFEEVYPHGFEEIPNRRPDVTKLKDLV 296
Query: 307 GWAPTMKQKDELRITYFWIKEQ 328
+ + +D L+ T W +E+
Sbjct: 297 QFQAKVTWEDGLKETIKWFREE 318
>TIGR_CMR|GSU_1815 [details] [associations]
symbol:GSU_1815 "NAD-dependent epimerase/dehydratase
family protein" species:243231 "Geobacter sulfurreducens PCA"
[GO:0009225 "nucleotide-sugar metabolic process" evidence=ISS]
[GO:0016829 "lyase activity" evidence=ISS] [GO:0016857 "racemase
and epimerase activity, acting on carbohydrates and derivatives"
evidence=ISS] InterPro:IPR001509 Pfam:PF01370 InterPro:IPR016040
GO:GO:0003824 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0044237 KO:K01710
HOGENOM:HOG000168004 OMA:LGHENFE RefSeq:NP_952865.1
ProteinModelPortal:Q74C60 GeneID:2686299 KEGG:gsu:GSU1815
PATRIC:22026487 ProtClustDB:CLSK828578
BioCyc:GSUL243231:GH27-1866-MONOMER Uniprot:Q74C60
Length = 311
Score = 158 (60.7 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 79/320 (24%), Positives = 136/320 (42%)
Query: 24 LRISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHEFHLVD 83
+RI G GFI S++ RL + H + N + S N + +M+ F H F ++
Sbjct: 1 MRILVTGGAGFIGSHLCERLLEQGHDVLCLDN--FFTGSKRNI-DRLMD--F-HRFEVIR 54
Query: 84 LRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAA---RMNGV 140
+++ L VD + NLA + + Q N + + + +ML A R +
Sbjct: 55 HDIIEPILLE---VDRIYNLACPASPVHY-QYNPVKTIKTSVMGTINMLGLAKRVRARIL 110
Query: 141 MSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIEC 200
+ T I+P+ + +V P + Y K E L Y + ++
Sbjct: 111 QASTSEVYGDPTIHPQPESYWGNVN-----PIGIRSCYDEGKRVAETLLMDYHRQNGVDI 165
Query: 201 RLV---GEKAP--AAFSRKAVTST-------DNFEMWGDGKQTRSLTFIDECVEGVLRLI 248
R+ P A + V++ ++ ++GDG QTRS ++D+ ++G++ L+
Sbjct: 166 RIARIFNTYGPRMAEHDGRVVSNFVVQALRGEDLTVYGDGSQTRSFCYVDDLLDGLVTLM 225
Query: 249 KSD-FREPLNIGSDEMVSINEMAEIILSFENEKLPI--HPIPGPEGVRGRNSDDTLINEE 305
+ D F P+N+G+ E I E A I++ I P+P + R R D TL
Sbjct: 226 EHDQFCGPVNLGNPEETPIIEFARRIIAMTGSSSQIIYRPLPSDDP-RQRQPDITLARTI 284
Query: 306 LGWAPTMKQKDELR--ITYF 323
LGW P + + L I YF
Sbjct: 285 LGWEPRVSLDEGLAKTIEYF 304
>TIGR_CMR|CJE_1513 [details] [associations]
symbol:CJE_1513 "NAD-dependent epimerase/dehydratase
family protein" species:195099 "Campylobacter jejuni RM1221"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0009225
"nucleotide-sugar metabolic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 eggNOG:COG0451 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0009225 EMBL:CP000025 GenomeReviews:CP000025_GR
HOGENOM:HOG000167994 GO:GO:0008460 PANTHER:PTHR10366:SF41
RefSeq:YP_179498.1 ProteinModelPortal:Q5HT87 STRING:Q5HT87
GeneID:3232144 KEGG:cjr:CJE1513 PATRIC:20044818 OMA:EVFRLCC
ProtClustDB:CLSK864552 BioCyc:CJEJ195099:GJC0-1541-MONOMER
Uniprot:Q5HT87
Length = 323
Score = 154 (59.3 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 75/326 (23%), Positives = 135/326 (41%)
Query: 30 GVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHEFHLV--DLRVM 87
G GFI S++ L + ++ Y + W H+ + F + +V DLR
Sbjct: 8 GADGFIGSHLCESLVKKGFKVRALSQ--YNSFNFWG---HLEKSPFLKDMEVVSGDLRDS 62
Query: 88 DNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSLTFFF 147
C ++T +D + +L A + + + + + N + +MLEAA+ N + F
Sbjct: 63 FFCEKITKNIDAIFHLGA-LIAIPYSYTAPQSYVDTNVNGTLNMLEAAKKNEISH--FIH 119
Query: 148 VSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIECRLV---- 203
S++ +Y + D K P +PQ Y K+A + + Y F + +
Sbjct: 120 TSTSEVYGTAFYVPIDEKH----PLQPQSPYSASKIAADMMALSYYNSFNLNVNIARPFN 175
Query: 204 --GEKAPA-AFSRKAVTS--TDNFEM-WGDGKQTRSLTFIDECVEGVLRLIK-SDFREPL 256
G + A A +T + E+ GD R L F+ + EG + L+ F E
Sbjct: 176 TYGPRQSARAIIPTIITQILSGAKEIKLGDLSPKRDLNFVLDTCEGFISLLNLKHFGEVY 235
Query: 257 NIGSDEMVSINEMAEIILSFENEKLPIHPIPGPEGVRGRNS-------DDTLINEELGWA 309
NIGS S+ E+ +I + K+ I I + +R +NS D + + W
Sbjct: 236 NIGSGVEYSMQEVLNLIQKILDSKVKI--IQDEQRLRPKNSEVFRLCCDANKLKKATNWQ 293
Query: 310 PTMKQKDELRITYFWIKEQVEKEKAQ 335
+ ++ LR + + KE +E K++
Sbjct: 294 SKISLEEGLRQSIEYFKENLENYKSE 319
>UNIPROTKB|F1SU22 [details] [associations]
symbol:UXS1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0050662
"coenzyme binding" evidence=IEA] [GO:0048040 "UDP-glucuronate
decarboxylase activity" evidence=IEA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001509 InterPro:IPR021761 Pfam:PF01370
Pfam:PF11803 InterPro:IPR016040 GO:GO:0005739 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0044237
GeneTree:ENSGT00530000063128 GO:GO:0048040 OMA:LGHENFE
EMBL:CU929826 Ensembl:ENSSSCT00000008920 Uniprot:F1SU22
Length = 397
Score = 152 (58.6 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 74/323 (22%), Positives = 137/323 (42%)
Query: 25 RISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHE-FHLVD 83
RI G GF+ S++ +L + H T + N + N EH + HE F L++
Sbjct: 67 RILITGGAGFVGSHLTDKLMMDGHEVTVVDN--FFTGRKRNV-EHWIG----HENFELIN 119
Query: 84 LRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSL 143
V++ + VD + +LA+ ++ N + NT + +ML A+ G L
Sbjct: 120 HDVVEP---LYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGARLL 175
Query: 144 TFFFVSSACIY--PEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIECR 201
S++ +Y PE T+ P P+ Y K E +C Y K +E R
Sbjct: 176 ---LASTSEVYGDPEVHP-QTEDYWGHVNPVGPRACYDEGKRVAETMCYAYMKQEGVEVR 231
Query: 202 LV------GEK-------APAAFSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLI 248
+ G + + F +A+ + ++G G QTR+ ++ + V G++ L+
Sbjct: 232 VARIFNTFGPRMHMNDGRVVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVALM 290
Query: 249 KSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIP-GPEGVRGRNSDDTLINEELG 307
S+ P+N+G+ E +I E A++I + I + + + R D LG
Sbjct: 291 NSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLG 350
Query: 308 WAPTMKQKDELRITYFWIKEQVE 330
W P + ++ L + ++++E
Sbjct: 351 WEPVVPLEEGLNKAIHYFRKELE 373
>UNIPROTKB|B3KV61 [details] [associations]
symbol:UXS1 "UDP-glucuronate decarboxylase 1, isoform
CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0048040 "UDP-glucuronate decarboxylase activity"
evidence=IEA] [GO:0050662 "coenzyme binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR001509
InterPro:IPR021761 Pfam:PF01370 Pfam:PF11803 InterPro:IPR016040
GO:GO:0005739 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
EMBL:CH471127 GO:GO:0044237 EMBL:AC018878 HOVERGEN:HBG094144
GO:GO:0048040 IPI:IPI00658111 UniGene:Hs.469561 HGNC:HGNC:17729
EMBL:AK122696 SMR:B3KV61 STRING:B3KV61 Ensembl:ENST00000540130
Uniprot:B3KV61
Length = 363
Score = 151 (58.2 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 74/323 (22%), Positives = 136/323 (42%)
Query: 25 RISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHE-FHLVD 83
RI G GF+ S++ +L + H T + N + N EH + HE F L++
Sbjct: 33 RILITGGAGFVGSHLTDKLMMDGHEVTVVDN--FFTGRKRNV-EHWIG----HENFELIN 85
Query: 84 LRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSL 143
V++ + VD + +LA+ ++ N + NT + +ML A+ G L
Sbjct: 86 HDVVEP---LYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGARLL 141
Query: 144 TFFFVSSACIY--PEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIECR 201
S++ +Y PE D P P+ Y K E +C Y K +E R
Sbjct: 142 ---LASTSEVYGDPEVHPQSEDYW-GHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVR 197
Query: 202 LV------GEK-------APAAFSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLI 248
+ G + + F +A+ + ++G G QTR+ ++ + V G++ L+
Sbjct: 198 VARIFNTFGPRMHMNDGRVVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVALM 256
Query: 249 KSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIP-GPEGVRGRNSDDTLINEELG 307
S+ P+N+G+ E +I E A++I + I + + + R D LG
Sbjct: 257 NSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLG 316
Query: 308 WAPTMKQKDELRITYFWIKEQVE 330
W P + ++ L + ++++E
Sbjct: 317 WEPVVPLEEGLNKAIHYFRKELE 339
>TAIR|locus:2081675 [details] [associations]
symbol:AUD1 "AT3G62830" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0005794 "Golgi apparatus" evidence=ISM;IDA] [GO:0009225
"nucleotide-sugar metabolic process" evidence=ISS] [GO:0008460
"dTDP-glucose 4,6-dehydratase activity" evidence=ISS] [GO:0019305
"dTDP-rhamnose biosynthetic process" evidence=ISS] [GO:0016020
"membrane" evidence=TAS] [GO:0042732 "D-xylose metabolic process"
evidence=IDA] [GO:0048040 "UDP-glucuronate decarboxylase activity"
evidence=IDA] [GO:0000139 "Golgi membrane" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0005768 "endosome" evidence=IDA] [GO:0005802
"trans-Golgi network" evidence=IDA] InterPro:IPR001509 Pfam:PF01370
InterPro:IPR016040 GO:GO:0005886 EMBL:CP002686 GO:GO:0000139
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0005768
EMBL:AL162651 GO:GO:0005802 GO:GO:0042732 GO:GO:0008460
GO:GO:0019305 GO:GO:0048040 OMA:FSEALIM UniGene:At.23561
UniGene:At.27002 UniGene:At.63633 EMBL:AY143897 IPI:IPI00539694
PIR:T48072 RefSeq:NP_001118893.1 RefSeq:NP_191842.1
ProteinModelPortal:Q9LZI2 SMR:Q9LZI2 PRIDE:Q9LZI2
EnsemblPlants:AT3G62830.1 EnsemblPlants:AT3G62830.2 GeneID:825458
KEGG:ath:AT3G62830 TAIR:At3g62830 InParanoid:Q9LZI2
PhylomeDB:Q9LZI2 ProtClustDB:PLN02206 Genevestigator:Q9LZI2
Uniprot:Q9LZI2
Length = 445
Score = 152 (58.6 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 71/328 (21%), Positives = 135/328 (41%)
Query: 24 LRISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHEFHLVD 83
LR+ G GF+ S++ RL + + N + E++M F ++
Sbjct: 119 LRVVVTGGAGFVGSHLVDRLMARGDTVIVVDNFFT------GRKENVMHHFSNPNFEMIR 172
Query: 84 LRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSL 143
V++ L VD + +LA + + + N + N + +ML A+ G
Sbjct: 173 HDVVEPILLE---VDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGAR-- 226
Query: 144 TFFFVSSACIYPE-FKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIECRL 202
F S++ +Y + + + P + Y K E L Y + +E R+
Sbjct: 227 -FLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRI 285
Query: 203 V------GEK-------APAAFSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLIK 249
G + + F +A+ + ++GDGKQTRS F+ + VEG++RL++
Sbjct: 286 ARIFNTYGPRMCIDDGRVVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEGLMRLME 344
Query: 250 SDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIPGPEG-VRGRNSDDTLINEELGW 308
+ P N+G+ ++ E+A+++ + I P E R D T E LGW
Sbjct: 345 GEHVGPFNLGNPGEFTMLELAKVVQETIDPNANIEFRPNTEDDPHKRKPDITKAKELLGW 404
Query: 309 APTMKQKDELRITYFWIKEQVEKEKAQG 336
P + + L + +++V ++ +G
Sbjct: 405 EPKVSLRQGLPLMVKDFRQRVFGDQKEG 432
>UNIPROTKB|E1BMI4 [details] [associations]
symbol:UXS1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050662 "coenzyme binding" evidence=IEA] [GO:0048040
"UDP-glucuronate decarboxylase activity" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR001509 InterPro:IPR021761 Pfam:PF01370 Pfam:PF11803
InterPro:IPR016040 GO:GO:0005739 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0044237 GeneTree:ENSGT00530000063128 CTD:80146
KO:K08678 GO:GO:0048040 OMA:LGHENFE EMBL:DAAA02031058
EMBL:DAAA02031059 EMBL:DAAA02031060 IPI:IPI00712240
RefSeq:NP_001192993.1 UniGene:Bt.57545 ProteinModelPortal:E1BMI4
Ensembl:ENSBTAT00000007374 GeneID:534788 KEGG:bta:534788
NextBio:20876532 Uniprot:E1BMI4
Length = 420
Score = 151 (58.2 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 74/323 (22%), Positives = 137/323 (42%)
Query: 25 RISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHE-FHLVD 83
RI G GF+ S++ +L + H T + N + N EH + HE F L++
Sbjct: 90 RILVTGGAGFVGSHLTDKLMMDGHEVTVVDN--FFTGRKRNV-EHWIG----HENFELIN 142
Query: 84 LRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSL 143
V++ + VD + +LA+ ++ N + NT + +ML A+ G L
Sbjct: 143 HDVVEP---LYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGARLL 198
Query: 144 TFFFVSSACIY--PEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIECR 201
S++ +Y PE T+ P P+ Y K E +C Y K +E R
Sbjct: 199 ---LASTSEVYGDPEVHP-QTEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVR 254
Query: 202 LV------GEK-------APAAFSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLI 248
+ G + + F +A+ + ++G G QTR+ ++ + V G++ L+
Sbjct: 255 VARIFNTFGPRMHMNDGRVVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVALM 313
Query: 249 KSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIP-GPEGVRGRNSDDTLINEELG 307
S+ P+N+G+ E +I E A++I + I + + + R D LG
Sbjct: 314 NSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLG 373
Query: 308 WAPTMKQKDELRITYFWIKEQVE 330
W P + ++ L + ++++E
Sbjct: 374 WEPVVPLEEGLNKAIHYFRKELE 396
>UNIPROTKB|Q8NBZ7 [details] [associations]
symbol:UXS1 "UDP-glucuronic acid decarboxylase 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0050662 "coenzyme binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0048040
"UDP-glucuronate decarboxylase activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032580 "Golgi cisterna membrane"
evidence=IEA] [GO:0033320 "UDP-D-xylose biosynthetic process"
evidence=IEA] InterPro:IPR001509 InterPro:IPR021761 Pfam:PF01370
Pfam:PF11803 UniPathway:UPA00796 InterPro:IPR016040 GO:GO:0016021
GO:GO:0005739 eggNOG:COG0451 GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0032580 EMBL:AC018878 CTD:80146
HOGENOM:HOG000168004 HOVERGEN:HBG094144 KO:K08678 GO:GO:0048040
GO:GO:0033320 EMBL:AY147934 EMBL:AY358541 EMBL:AK027244
EMBL:AK075120 EMBL:AK075170 EMBL:BC009819 IPI:IPI00410544
IPI:IPI00657807 IPI:IPI00658111 RefSeq:NP_001240804.1
RefSeq:NP_001240805.1 RefSeq:NP_079352.2 UniGene:Hs.469561 PDB:2B69
PDB:4GLL PDBsum:2B69 PDBsum:4GLL ProteinModelPortal:Q8NBZ7
SMR:Q8NBZ7 IntAct:Q8NBZ7 STRING:Q8NBZ7 PhosphoSite:Q8NBZ7
DMDM:74730150 PaxDb:Q8NBZ7 PRIDE:Q8NBZ7 DNASU:80146
Ensembl:ENST00000283148 Ensembl:ENST00000409032
Ensembl:ENST00000409501 GeneID:80146 KEGG:hsa:80146 UCSC:uc002tdl.3
UCSC:uc002tdn.3 GeneCards:GC02M106709 H-InvDB:HIX0030285
HGNC:HGNC:17729 HPA:HPA008825 MIM:609749 neXtProt:NX_Q8NBZ7
PharmGKB:PA38465 OMA:LGHENFE EvolutionaryTrace:Q8NBZ7
GenomeRNAi:80146 NextBio:70422 ArrayExpress:Q8NBZ7 Bgee:Q8NBZ7
CleanEx:HS_UXS1 Genevestigator:Q8NBZ7 GermOnline:ENSG00000115652
Uniprot:Q8NBZ7
Length = 420
Score = 151 (58.2 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 74/323 (22%), Positives = 136/323 (42%)
Query: 25 RISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHE-FHLVD 83
RI G GF+ S++ +L + H T + N + N EH + HE F L++
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDN--FFTGRKRNV-EHWIG----HENFELIN 142
Query: 84 LRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSL 143
V++ + VD + +LA+ ++ N + NT + +ML A+ G L
Sbjct: 143 HDVVEP---LYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGARLL 198
Query: 144 TFFFVSSACIY--PEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIECR 201
S++ +Y PE D P P+ Y K E +C Y K +E R
Sbjct: 199 ---LASTSEVYGDPEVHPQSEDYW-GHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVR 254
Query: 202 LV------GEK-------APAAFSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLI 248
+ G + + F +A+ + ++G G QTR+ ++ + V G++ L+
Sbjct: 255 VARIFNTFGPRMHMNDGRVVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVALM 313
Query: 249 KSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIP-GPEGVRGRNSDDTLINEELG 307
S+ P+N+G+ E +I E A++I + I + + + R D LG
Sbjct: 314 NSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLG 373
Query: 308 WAPTMKQKDELRITYFWIKEQVE 330
W P + ++ L + ++++E
Sbjct: 374 WEPVVPLEEGLNKAIHYFRKELE 396
>MGI|MGI:1915133 [details] [associations]
symbol:Uxs1 "UDP-glucuronate decarboxylase 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=ISO] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016829 "lyase activity"
evidence=IEA] [GO:0016831 "carboxy-lyase activity" evidence=IEA]
[GO:0044237 "cellular metabolic process" evidence=IEA] [GO:0048040
"UDP-glucuronate decarboxylase activity" evidence=ISO] [GO:0050662
"coenzyme binding" evidence=IEA] InterPro:IPR001509
InterPro:IPR021761 Pfam:PF01370 Pfam:PF11803 UniPathway:UPA00796
InterPro:IPR016040 MGI:MGI:1915133 GO:GO:0016021 GO:GO:0005739
eggNOG:COG0451 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0032580 GeneTree:ENSGT00530000063128 CTD:80146
HOVERGEN:HBG094144 KO:K08678 OrthoDB:EOG4ZW5B0 GO:GO:0048040
GO:GO:0033320 OMA:LGHENFE EMBL:AF399958 EMBL:AK075806 EMBL:AK152376
EMBL:BC037049 IPI:IPI00129252 RefSeq:NP_080706.1 UniGene:Mm.387202
ProteinModelPortal:Q91XL3 SMR:Q91XL3 STRING:Q91XL3
PhosphoSite:Q91XL3 PaxDb:Q91XL3 PRIDE:Q91XL3
Ensembl:ENSMUST00000126008 GeneID:67883 KEGG:mmu:67883
UCSC:uc007avq.1 InParanoid:Q91XL3 NextBio:325829 Bgee:Q91XL3
CleanEx:MM_UXS1 Genevestigator:Q91XL3 GermOnline:ENSMUSG00000057363
Uniprot:Q91XL3
Length = 420
Score = 151 (58.2 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 74/323 (22%), Positives = 136/323 (42%)
Query: 25 RISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHE-FHLVD 83
RI G GF+ S++ +L + H T + N + N EH + HE F L++
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDN--FFTGRKRNV-EHWIG----HENFELIN 142
Query: 84 LRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSL 143
V++ + VD + +LA+ ++ N + NT + +ML A+ G L
Sbjct: 143 HDVVEP---LYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGARLL 198
Query: 144 TFFFVSSACIY--PEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIECR 201
S++ +Y PE D P P+ Y K E +C Y K +E R
Sbjct: 199 ---LASTSEVYGDPEVHPQSEDYW-GHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVR 254
Query: 202 LV------GEK-------APAAFSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLI 248
+ G + + F +A+ + ++G G QTR+ ++ + V G++ L+
Sbjct: 255 VARIFNTFGPRMHMNDGRVVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVALM 313
Query: 249 KSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIP-GPEGVRGRNSDDTLINEELG 307
S+ P+N+G+ E +I E A++I + I + + + R D LG
Sbjct: 314 NSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLG 373
Query: 308 WAPTMKQKDELRITYFWIKEQVE 330
W P + ++ L + ++++E
Sbjct: 374 WEPVVPLEEGLNKAIHYFRKELE 396
>RGD|628680 [details] [associations]
symbol:Uxs1 "UDP-glucuronate decarboxylase 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0032580 "Golgi cisterna membrane" evidence=IEA] [GO:0033320
"UDP-D-xylose biosynthetic process" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0048040
"UDP-glucuronate decarboxylase activity" evidence=IDA] [GO:0050662
"coenzyme binding" evidence=IEA] InterPro:IPR001509
InterPro:IPR021761 Pfam:PF01370 Pfam:PF11803 UniPathway:UPA00796
InterPro:IPR016040 RGD:628680 GO:GO:0016021 GO:GO:0005794
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0032580
CTD:80146 HOVERGEN:HBG094144 KO:K08678 GO:GO:0048040 GO:GO:0033320
EMBL:AF482705 EMBL:BC086988 IPI:IPI00480702 RefSeq:NP_647552.1
UniGene:Rn.3037 ProteinModelPortal:Q5PQX0 SMR:Q5PQX0 PRIDE:Q5PQX0
GeneID:246232 KEGG:rno:246232 NextBio:623518 Genevestigator:Q5PQX0
Uniprot:Q5PQX0
Length = 420
Score = 151 (58.2 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 74/323 (22%), Positives = 136/323 (42%)
Query: 25 RISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHE-FHLVD 83
RI G GF+ S++ +L + H T + N + N EH + HE F L++
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDN--FFTGRKRNV-EHWIG----HENFELIN 142
Query: 84 LRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSL 143
V++ + VD + +LA+ ++ N + NT + +ML A+ G L
Sbjct: 143 HDVVEP---LYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGARLL 198
Query: 144 TFFFVSSACIY--PEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIECR 201
S++ +Y PE D P P+ Y K E +C Y K +E R
Sbjct: 199 ---LASTSEVYGDPEVHPQSEDYW-GHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVR 254
Query: 202 LV------GEK-------APAAFSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLI 248
+ G + + F +A+ + ++G G QTR+ ++ + V G++ L+
Sbjct: 255 VARIFNTFGPRMHMNDGRVVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVALM 313
Query: 249 KSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIP-GPEGVRGRNSDDTLINEELG 307
S+ P+N+G+ E +I E A++I + I + + + R D LG
Sbjct: 314 NSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLG 373
Query: 308 WAPTMKQKDELRITYFWIKEQVE 330
W P + ++ L + ++++E
Sbjct: 374 WEPVVPLEEGLNKAIHYFRKELE 396
>UNIPROTKB|Q5PQX0 [details] [associations]
symbol:Uxs1 "UDP-glucuronic acid decarboxylase 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0050662 "coenzyme binding" evidence=IEA]
InterPro:IPR001509 InterPro:IPR021761 Pfam:PF01370 Pfam:PF11803
UniPathway:UPA00796 InterPro:IPR016040 RGD:628680 GO:GO:0016021
GO:GO:0005794 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0032580 CTD:80146 HOVERGEN:HBG094144 KO:K08678 GO:GO:0048040
GO:GO:0033320 EMBL:AF482705 EMBL:BC086988 IPI:IPI00480702
RefSeq:NP_647552.1 UniGene:Rn.3037 ProteinModelPortal:Q5PQX0
SMR:Q5PQX0 PRIDE:Q5PQX0 GeneID:246232 KEGG:rno:246232
NextBio:623518 Genevestigator:Q5PQX0 Uniprot:Q5PQX0
Length = 420
Score = 151 (58.2 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 74/323 (22%), Positives = 136/323 (42%)
Query: 25 RISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHE-FHLVD 83
RI G GF+ S++ +L + H T + N + N EH + HE F L++
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDN--FFTGRKRNV-EHWIG----HENFELIN 142
Query: 84 LRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSL 143
V++ + VD + +LA+ ++ N + NT + +ML A+ G L
Sbjct: 143 HDVVEP---LYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGARLL 198
Query: 144 TFFFVSSACIY--PEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIECR 201
S++ +Y PE D P P+ Y K E +C Y K +E R
Sbjct: 199 ---LASTSEVYGDPEVHPQSEDYW-GHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVR 254
Query: 202 LV------GEK-------APAAFSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLI 248
+ G + + F +A+ + ++G G QTR+ ++ + V G++ L+
Sbjct: 255 VARIFNTFGPRMHMNDGRVVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVALM 313
Query: 249 KSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIP-GPEGVRGRNSDDTLINEELG 307
S+ P+N+G+ E +I E A++I + I + + + R D LG
Sbjct: 314 NSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLG 373
Query: 308 WAPTMKQKDELRITYFWIKEQVE 330
W P + ++ L + ++++E
Sbjct: 374 WEPVVPLEEGLNKAIHYFRKELE 396
>UNIPROTKB|P32055 [details] [associations]
symbol:fcl "Fcl" species:83333 "Escherichia coli K-12"
[GO:0050662 "coenzyme binding" evidence=IEA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042351 "'de novo' GDP-L-fucose biosynthetic
process" evidence=IEA] [GO:0009242 "colanic acid biosynthetic
process" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0009103 "lipopolysaccharide biosynthetic process" evidence=IEA]
[GO:0050577 "GDP-L-fucose synthase activity" evidence=IEA;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR001509
Pfam:PF01370 UniPathway:UPA00128 UniPathway:UPA00980
InterPro:IPR016040 GO:GO:0005737 eggNOG:COG0451 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0016853
GO:GO:0009103 HOGENOM:HOG000168011 KO:K02377 GO:GO:0050577
GO:GO:0042351 EMBL:U38473 PIR:C64971 RefSeq:NP_416556.1
RefSeq:YP_490294.1 PDB:1BSV PDB:1BWS PDB:1E6U PDB:1E7Q PDB:1E7R
PDB:1E7S PDB:1FXS PDB:1GFS PDBsum:1BSV PDBsum:1BWS PDBsum:1E6U
PDBsum:1E7Q PDBsum:1E7R PDBsum:1E7S PDBsum:1FXS PDBsum:1GFS
ProteinModelPortal:P32055 SMR:P32055 IntAct:P32055
EnsemblBacteria:EBESCT00000000077 EnsemblBacteria:EBESCT00000014550
GeneID:12930697 GeneID:946563 KEGG:ecj:Y75_p2015 KEGG:eco:b2052
PATRIC:32119437 EchoBASE:EB1736 EcoGene:EG11788 OMA:ASVHVMN
ProtClustDB:CLSK880275 BioCyc:EcoCyc:FCL-MONOMER
BioCyc:ECOL316407:JW2037-MONOMER BioCyc:MetaCyc:FCL-MONOMER
EvolutionaryTrace:P32055 Genevestigator:P32055 GO:GO:0009242
Uniprot:P32055
Length = 321
Score = 117 (46.2 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 34/127 (26%), Positives = 61/127 (48%)
Query: 78 EFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARM 137
E +L+D R + + + +D + AA +GG+ + + +Y+N I +++ AA
Sbjct: 38 ELNLLDSRAVHDFFA-SERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ 96
Query: 138 NGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEP-QDAYGLEKLATEGLCKHYTKDF 196
N V L F+ S+CIYP+ + E EP + Y + K+A LC+ Y + +
Sbjct: 97 NDVNKL--LFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY 154
Query: 197 EIECRLV 203
+ R V
Sbjct: 155 GRDYRSV 161
Score = 72 (30.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 29/132 (21%), Positives = 52/132 (39%)
Query: 211 FSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEG---VLRLIKSDFRE---PL----NIGS 260
F + + +WG G R +D+ V+ L + E P+ N+G+
Sbjct: 188 FHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGT 247
Query: 261 DEMVSINEMAEIILSFENEK-LPIHPIPGPEGVRGRNSDDTLINEELGWAPTMKQKDELR 319
+I E+A+ I K + P+G + D T +++ LGW + + L
Sbjct: 248 GVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQ-LGWYHEISLEAGLA 306
Query: 320 ITYFWIKEQVEK 331
TY W E ++
Sbjct: 307 STYQWFLENQDR 318
>UNIPROTKB|E1BV28 [details] [associations]
symbol:UXS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0048040
"UDP-glucuronate decarboxylase activity" evidence=IEA] [GO:0050662
"coenzyme binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR001509 InterPro:IPR021761 Pfam:PF01370
Pfam:PF11803 InterPro:IPR016040 GO:GO:0005739 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0044237
GeneTree:ENSGT00530000063128 CTD:80146 KO:K08678 GO:GO:0048040
OMA:LGHENFE EMBL:AADN02017868 IPI:IPI00574801 RefSeq:XP_416926.1
ProteinModelPortal:E1BV28 Ensembl:ENSGALT00000027123 GeneID:418728
KEGG:gga:418728 NextBio:20821874 Uniprot:E1BV28
Length = 421
Score = 148 (57.2 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 74/323 (22%), Positives = 136/323 (42%)
Query: 25 RISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHE-FHLVD 83
RI G GF+ S++ +L + H T + N + N EH + HE F L++
Sbjct: 91 RILITGGAGFVGSHLTDKLMMDGHEVTVVDN--FFTGRKRNV-EHWIG----HENFELIN 143
Query: 84 LRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSL 143
V++ + VD + +LA+ ++ N + NT + +ML A+ G L
Sbjct: 144 HDVVEP---LYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGARLL 199
Query: 144 TFFFVSSACIY--PEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIECR 201
S++ +Y PE + D P P+ Y K E +C Y K +E R
Sbjct: 200 ---LASTSEVYGDPEVHPQNEDYW-GHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVR 255
Query: 202 LV------GEK-------APAAFSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLI 248
+ G + + F +A+ + ++G G QTR+ ++ + V G++ L+
Sbjct: 256 VARIFNTFGPRMHMNDGRVVSNFILQALQG-EPLTVYGPGTQTRAFQYVSDLVNGLVALM 314
Query: 249 KSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIP-GPEGVRGRNSDDTLINEELG 307
S+ P+N+G+ E +I E A++I I + + + R D LG
Sbjct: 315 NSNVSSPVNLGNPEEHTILEFAQLIKKLVGSGSEIQFLSEAQDDPQKRKPDIRKAKLLLG 374
Query: 308 WAPTMKQKDELRITYFWIKEQVE 330
W P + ++ L + ++++E
Sbjct: 375 WEPVVPLEEGLNKAIHYFRKELE 397
>TAIR|locus:2078206 [details] [associations]
symbol:UXS5 "UDP-XYL synthase 5" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA;ISS]
[GO:0005886 "plasma membrane" evidence=ISM] [GO:0009225
"nucleotide-sugar metabolic process" evidence=ISS] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0050662 "coenzyme
binding" evidence=IEA] [GO:0042732 "D-xylose metabolic process"
evidence=RCA;TAS] [GO:0048040 "UDP-glucuronate decarboxylase
activity" evidence=ISS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009744 "response to sucrose stimulus" evidence=RCA]
[GO:0009749 "response to glucose stimulus" evidence=RCA]
[GO:0009750 "response to fructose stimulus" evidence=RCA]
InterPro:IPR001509 Pfam:PF01370 InterPro:IPR016040 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003824 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0044237 GO:GO:0042732
EMBL:AL133298 HSSP:P27830 HOGENOM:HOG000168004 EMBL:AY072098
EMBL:AY096586 EMBL:AY087118 EMBL:AK228600 EMBL:AK317497
IPI:IPI00534151 PIR:T45701 RefSeq:NP_001030820.1 RefSeq:NP_190228.1
UniGene:At.43598 ProteinModelPortal:Q9SN95 SMR:Q9SN95 STRING:Q9SN95
PRIDE:Q9SN95 EnsemblPlants:AT3G46440.1 EnsemblPlants:AT3G46440.2
GeneID:823794 KEGG:ath:AT3G46440 TAIR:At3g46440 InParanoid:Q9SN95
OMA:QISTQNR PhylomeDB:Q9SN95 ProtClustDB:CLSN2683686
ArrayExpress:Q9SN95 Genevestigator:Q9SN95 Uniprot:Q9SN95
Length = 341
Score = 145 (56.1 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 228 GKQTRSLTFIDECVEGVLRLIKSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIP 287
G QTRS ++ + V+G++RL++ D P+NIG+ ++ E+AE + N + I +
Sbjct: 234 GTQTRSFCYVSDMVDGLMRLMEGDDTGPINIGNPGEFTMVELAETVKELINPSIEIKMVE 293
Query: 288 G-PEGVRGRNSDDTLINEELGWAPTMKQKDEL 318
P+ R R D T E LGW P +K ++ L
Sbjct: 294 NTPDDPRQRKPDITKAKEVLGWEPKVKLREGL 325
>UNIPROTKB|F1PU61 [details] [associations]
symbol:UXS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0050662 "coenzyme binding" evidence=IEA] [GO:0048040
"UDP-glucuronate decarboxylase activity" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001509 InterPro:IPR021761
Pfam:PF01370 Pfam:PF11803 InterPro:IPR016040 GO:GO:0005739
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0044237
GeneTree:ENSGT00530000063128 GO:GO:0048040 OMA:LGHENFE
EMBL:AAEX03007410 Ensembl:ENSCAFT00000003315 Uniprot:F1PU61
Length = 414
Score = 146 (56.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 73/323 (22%), Positives = 135/323 (41%)
Query: 25 RISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHE-FHLVD 83
RI G GF+ S++ +L + H T + N + N EH + HE F L++
Sbjct: 84 RILITGGAGFVGSHLTDKLMMDGHEVTVVDN--FFTGRKRNV-EHWIG----HENFELIN 136
Query: 84 LRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSL 143
V++ + VD + +LA+ ++ N + NT + +ML A+ G L
Sbjct: 137 HDVVEP---LYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGARLL 192
Query: 144 TFFFVSSACIY--PEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIECR 201
S++ +Y PE D P P+ Y K E +C Y K +E R
Sbjct: 193 ---LASTSEVYGDPEVHPQSEDYW-GHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVR 248
Query: 202 LV------GEK-------APAAFSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLI 248
+ G + + F +A+ + ++G G QTR+ ++ + V G++ L+
Sbjct: 249 VARIFNTFGPRMHMNDGRVVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVALM 307
Query: 249 KSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIP-GPEGVRGRNSDDTLINEELG 307
S+ P+N+G+ E +I E A++I + I + + + R D L
Sbjct: 308 NSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIRKAKMMLA 367
Query: 308 WAPTMKQKDELRITYFWIKEQVE 330
W P + ++ L + ++++E
Sbjct: 368 WEPVVPLEEGLNKAIHYFRKELE 390
>UNIPROTKB|Q47WH1 [details] [associations]
symbol:CPS_4200 "NAD-dependent epimerase/dehydratase family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009225 "nucleotide-sugar
metabolic process" evidence=ISS] InterPro:IPR001509 Pfam:PF01370
InterPro:IPR016040 GO:GO:0003824 eggNOG:COG0451 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009225 EMBL:CP000083
GenomeReviews:CP000083_GR HOGENOM:HOG000168011 KO:K02377
OMA:ASVHVMN RefSeq:YP_270851.1 ProteinModelPortal:Q47WH1
STRING:Q47WH1 GeneID:3522019 KEGG:cps:CPS_4200 PATRIC:21471263
ProtClustDB:CLSK2768411 BioCyc:CPSY167879:GI48-4210-MONOMER
Uniprot:Q47WH1
Length = 313
Score = 104 (41.7 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 35/119 (29%), Positives = 57/119 (47%)
Query: 223 EMWGDGKQTRSLTFIDECVEGVLRLIKSDFREP--LNIGSDEMVSINE----MAEIILSF 276
++WGDGK R + + + + I + R P LN+G E +IN+ +AEII F
Sbjct: 197 DIWGDGKARREFMYAGDLADFIFYAIANFSRMPQNLNVGLGEDFTINDYYQRIAEII-GF 255
Query: 277 ENEKLPIHPIPGPEGVRGRNSDDTLINEELGWAPTMKQKDELRITY-FWIKEQVEKEKA 334
H + P G++ + DD +N GW+ + L+ T F++ EQ E+A
Sbjct: 256 SGTFK--HDLTKPVGMKQKLIDDNKLNA-FGWSYKTDLTEGLKNTVQFFLSEQNLSEQA 311
Score = 82 (33.9 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 26/94 (27%), Positives = 48/94 (51%)
Query: 108 GGMGFIQSN--HSV-IMYKNTTISFDMLEAARMNGVMSLTFFFVSSACIYPE--FKQLDT 162
G +G IQ+N H V + N + ++L +A+ G+ F +SS+C+YP L
Sbjct: 60 GVVGGIQANMAHPVKFLVDNMQMGLNILNSAKNCGIKQ--FLNLSSSCMYPRDALNPLSE 117
Query: 163 D-VKESEAWPAEPQDAYGLEKLATEGLCKHYTKD 195
+ + + E P + Y L K+A+ LC++ + +
Sbjct: 118 ELILKGELEPTN--EGYALAKIASTRLCEYISHE 149
>TIGR_CMR|CPS_4200 [details] [associations]
symbol:CPS_4200 "NAD-dependent epimerase/dehydratase
family protein" species:167879 "Colwellia psychrerythraea 34H"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0009225
"nucleotide-sugar metabolic process" evidence=ISS]
InterPro:IPR001509 Pfam:PF01370 InterPro:IPR016040 GO:GO:0003824
eggNOG:COG0451 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0009225 EMBL:CP000083 GenomeReviews:CP000083_GR
HOGENOM:HOG000168011 KO:K02377 OMA:ASVHVMN RefSeq:YP_270851.1
ProteinModelPortal:Q47WH1 STRING:Q47WH1 GeneID:3522019
KEGG:cps:CPS_4200 PATRIC:21471263 ProtClustDB:CLSK2768411
BioCyc:CPSY167879:GI48-4210-MONOMER Uniprot:Q47WH1
Length = 313
Score = 104 (41.7 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 35/119 (29%), Positives = 57/119 (47%)
Query: 223 EMWGDGKQTRSLTFIDECVEGVLRLIKSDFREP--LNIGSDEMVSINE----MAEIILSF 276
++WGDGK R + + + + I + R P LN+G E +IN+ +AEII F
Sbjct: 197 DIWGDGKARREFMYAGDLADFIFYAIANFSRMPQNLNVGLGEDFTINDYYQRIAEII-GF 255
Query: 277 ENEKLPIHPIPGPEGVRGRNSDDTLINEELGWAPTMKQKDELRITY-FWIKEQVEKEKA 334
H + P G++ + DD +N GW+ + L+ T F++ EQ E+A
Sbjct: 256 SGTFK--HDLTKPVGMKQKLIDDNKLNA-FGWSYKTDLTEGLKNTVQFFLSEQNLSEQA 311
Score = 82 (33.9 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 26/94 (27%), Positives = 48/94 (51%)
Query: 108 GGMGFIQSN--HSV-IMYKNTTISFDMLEAARMNGVMSLTFFFVSSACIYPE--FKQLDT 162
G +G IQ+N H V + N + ++L +A+ G+ F +SS+C+YP L
Sbjct: 60 GVVGGIQANMAHPVKFLVDNMQMGLNILNSAKNCGIKQ--FLNLSSSCMYPRDALNPLSE 117
Query: 163 D-VKESEAWPAEPQDAYGLEKLATEGLCKHYTKD 195
+ + + E P + Y L K+A+ LC++ + +
Sbjct: 118 ELILKGELEPTN--EGYALAKIASTRLCEYISHE 149
>TIGR_CMR|DET_0204 [details] [associations]
symbol:DET_0204 "NAD-dependent epimerase/dehydratase
family protein" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0009225
"nucleotide-sugar metabolic process" evidence=ISS] [GO:0009243 "O
antigen biosynthetic process" evidence=ISS] InterPro:IPR001509
InterPro:IPR020904 Pfam:PF01370 PROSITE:PS00061 InterPro:IPR016040
eggNOG:COG0451 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0016491 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0044237
GO:GO:0055114 KO:K01784 HOGENOM:HOG000167994 RefSeq:YP_180952.1
ProteinModelPortal:Q3Z9Z7 STRING:Q3Z9Z7 GeneID:3230493
KEGG:det:DET0204 PATRIC:21607483 OMA:NTLATHN ProtClustDB:CLSK837597
BioCyc:DETH243164:GJNF-204-MONOMER Uniprot:Q3Z9Z7
Length = 312
Score = 143 (55.4 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 66/267 (24%), Positives = 118/267 (44%)
Query: 80 HLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNG 139
+L D ++D+ ++ G + + +LAA + + + NT + ++LEA R N
Sbjct: 56 NLTDKFLLDSAVK---GCETVFHLAAHANVQNSAKDT-GIDLENNTLATHNLLEAMRRNR 111
Query: 140 VMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIE 199
V L F SSA +Y E V + + P P YG KLA EGL Y+ + ++
Sbjct: 112 VDRLVF--ASSAAVYGES---GLTVLDEDYGPLLPISLYGASKLAGEGLISAYSHLYGLK 166
Query: 200 C------RLVGEKAPAA----FSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLR-LI 248
+VG + + F + + + + GDG Q++ + +CV G+L
Sbjct: 167 ATMFRFANIVGSRRHSGVIYDFVSRLRQNPSSLLVLGDGSQSKPYLHVSDCVAGMLLGFE 226
Query: 249 KSDFREPL-NIGSDEMVSINEMAEIILSFENEKLPIHPIPGPEGVRGRNSDDTLINEELG 307
KS L N+G+ + V++ ++A ++ S K + G G RG D + ++
Sbjct: 227 KSTKNLGLYNLGTPDSVAVRDIACLVASEMGLKNVCYSYSG--GERGWQGDAPQVRFDIS 284
Query: 308 WAPTM--KQK-DELRITYFWIKEQVEK 331
T+ K K L+ IKE +++
Sbjct: 285 RIRTLGFKPKFTSLQAVKLAIKETLKE 311
>WB|WBGene00005019 [details] [associations]
symbol:sqv-1 species:6239 "Caenorhabditis elegans"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0050662 "coenzyme
binding" evidence=IEA] [GO:0003854 "3-beta-hydroxy-delta5-steroid
dehydrogenase activity" evidence=IEA] [GO:0006694 "steroid
biosynthetic process" evidence=IEA] [GO:0016616 "oxidoreductase
activity, acting on the CH-OH group of donors, NAD or NADP as
acceptor" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0009058 "biosynthetic process" evidence=IEA]
[GO:0008831 "dTDP-4-dehydrorhamnose reductase activity"
evidence=IEA] [GO:0045226 "extracellular polysaccharide
biosynthetic process" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040025 "vulval development"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0060465 "pharynx development" evidence=IMP]
InterPro:IPR001509 Pfam:PF01370 InterPro:IPR016040 GO:GO:0009792
GO:GO:0002009 GO:GO:0005737 GO:GO:0018991 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0044237 GO:GO:0040025
GeneTree:ENSGT00530000063128 KO:K08678 GO:GO:0048040 EMBL:FO081016
EMBL:AY147933 PIR:T15892 RefSeq:NP_501418.1 UniGene:Cel.19768
ProteinModelPortal:G5EF65 SMR:G5EF65 EnsemblMetazoa:D2096.4.1
EnsemblMetazoa:D2096.4.2 GeneID:177631 KEGG:cel:CELE_D2096.4
CTD:177631 WormBase:D2096.4 OMA:FSEALIM NextBio:897688
Uniprot:G5EF65
Length = 467
Score = 145 (56.1 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 75/329 (22%), Positives = 136/329 (41%)
Query: 25 RISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCH-EFHLVD 83
RI G GF+ S++ +L + H ++ N Y KN +E H F +V
Sbjct: 138 RILITGGAGFVGSHLVDKLMLDGHEVIALDN--YFTGR--KKN---VEHWIGHPNFEMVH 190
Query: 84 LRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSL 143
V++ VD + +LA+ ++ + I NT + +ML A+ +
Sbjct: 191 HDVVNPYF---VEVDQIYHLASPASPPHYMYNPVKTIK-TNTLGTINMLGLAKR---VKA 243
Query: 144 TFFFVSSACIY--PEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIECR 201
T S++ +Y PE + P+ Y K E L Y K I+ R
Sbjct: 244 TVLLASTSEVYGDPEVHP-QPETYWGHVNTIGPRACYDEGKRVAESLMVAYNKQENIKIR 302
Query: 202 LV------GEKAPA----AFSRKAVTSTDN--FEMWGDGKQTRSLTFIDECVEGVLRLIK 249
+ G + S + + + ++G+G QTRS ++ + V+G+++L+
Sbjct: 303 IARIFNTFGPRMHMNDGRVVSNFIIQALQDKPITIYGNGTQTRSFQYVTDLVDGLIKLMN 362
Query: 250 SDFREPLNIGSDEMVSINEMAEIILSF-ENEKLPIHPIPGPEG-VRGRNSDDTLINEELG 307
S++ P+NIG+ E +I + A II I + + + R D E++
Sbjct: 363 SNYSLPVNIGNPEEHTIGQFATIIRDLVPGSTSEIVNLESQQDDPQQRRPDIRRAAEQIS 422
Query: 308 WAPTMKQKDELRITYFWIKEQVEKEKAQG 336
WAP + KD L T + + ++++ K G
Sbjct: 423 WAPQVHMKDGLLKTVDYFRAEIDRNKRGG 451
>TAIR|locus:2053275 [details] [associations]
symbol:UXS6 "UDP-XYL synthase 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA;ISS]
[GO:0005886 "plasma membrane" evidence=ISM;IDA] [GO:0009225
"nucleotide-sugar metabolic process" evidence=ISS] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0050662 "coenzyme
binding" evidence=IEA] [GO:0042732 "D-xylose metabolic process"
evidence=RCA] InterPro:IPR001509 Pfam:PF01370 InterPro:IPR016040
GO:GO:0005886 GO:GO:0003824 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0044237
EMBL:AC005727 HSSP:P27830 HOGENOM:HOG000168004 OMA:LGHENFE
ProtClustDB:CLSN2683686 EMBL:AY099703 EMBL:AY128899 IPI:IPI00536112
PIR:F84688 RefSeq:NP_001077972.1 RefSeq:NP_180443.1
RefSeq:NP_973555.1 UniGene:At.38572 ProteinModelPortal:Q9ZV36
SMR:Q9ZV36 STRING:Q9ZV36 PRIDE:Q9ZV36 EnsemblPlants:AT2G28760.1
EnsemblPlants:AT2G28760.2 EnsemblPlants:AT2G28760.3 GeneID:817426
KEGG:ath:AT2G28760 TAIR:At2g28760 InParanoid:Q9ZV36
PhylomeDB:Q9ZV36 ArrayExpress:Q9ZV36 Genevestigator:Q9ZV36
Uniprot:Q9ZV36
Length = 343
Score = 137 (53.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 76/321 (23%), Positives = 132/321 (41%)
Query: 15 RESHWPSGKLRISSIGVGGFIPSNIARRL-KSERHYSTSIPNALYIIASDWNKNEHMMED 73
R S + +RI G GFI S++ +L ++E++ N Y S N ++
Sbjct: 22 RNSKFFQSNMRILVTGGAGFIGSHLVDKLMQNEKNEVIVADN--YFTGSKDN-----LKK 74
Query: 74 MFCH-EFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDML 132
H F L+ V + + VD + +LA + F + N + N + +ML
Sbjct: 75 WIGHPRFELIRHDVTEP---LFVEVDQIYHLACPASPI-FYKYNPVKTIKTNVIGTLNML 130
Query: 133 EAARMNGVMSLTFFFVSSACIYPE-FKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKH 191
A+ G L S++ +Y + T+ P + Y K E L
Sbjct: 131 GLAKRVGARIL---LTSTSEVYGDPLVHPQTESYWGNVNPIGVRSCYDEGKRVAETLMFD 187
Query: 192 YTKDFEIECRLV------GEK-------APAAFSRKAVTSTDNFEMWGDGKQTRSLTFID 238
Y + IE R+ G + + F +A+ + + G QTRS ++
Sbjct: 188 YHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRG-EALTVQKPGTQTRSFCYVS 246
Query: 239 ECVEGVLRLIKSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIPG-PEGVRGRNS 297
+ VEG++RL++ D P+NIG+ ++ E+AE + + I + P+ R R
Sbjct: 247 DMVEGLMRLMEGDQTGPINIGNPGEFTMVELAETVKELIKPDVEIKMVENTPDDPRQRKP 306
Query: 298 DDTLINEELGWAPTMKQKDEL 318
D + E LGW P +K ++ L
Sbjct: 307 DISKAKEVLGWEPKVKLREGL 327
>TAIR|locus:2168539 [details] [associations]
symbol:UXS3 "UDP-glucuronic acid decarboxylase 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA;ISS] [GO:0005886 "plasma membrane" evidence=ISM]
[GO:0009225 "nucleotide-sugar metabolic process" evidence=ISS]
[GO:0044237 "cellular metabolic process" evidence=IEA] [GO:0050662
"coenzyme binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA;TAS] [GO:0042732 "D-xylose metabolic process"
evidence=RCA;IDA] [GO:0048040 "UDP-glucuronate decarboxylase
activity" evidence=IDA] InterPro:IPR001509 Pfam:PF01370
InterPro:IPR016040 GO:GO:0005829 EMBL:CP002688 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0044237 GO:GO:0042732
GO:GO:0048040 IPI:IPI00846930 RefSeq:NP_001078768.1
UniGene:At.24136 ProteinModelPortal:F4KHU8 SMR:F4KHU8 PRIDE:F4KHU8
EnsemblPlants:AT5G59290.2 GeneID:836047 KEGG:ath:AT5G59290
OMA:EINMVEN ArrayExpress:F4KHU8 Uniprot:F4KHU8
Length = 357
Score = 136 (52.9 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 228 GKQTRSLTFIDECVEGVLRLIKSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIP 287
G QTRS ++ + V+G++RL++ + P+NIG+ ++ E+AE + N + I +
Sbjct: 250 GTQTRSFCYVSDMVDGLIRLMEGNDTGPINIGNPGEFTMVELAETVKELINPSIEIKMVE 309
Query: 288 G-PEGVRGRNSDDTLINEELGWAPTMKQKDEL 318
P+ R R D + E LGW P +K ++ L
Sbjct: 310 NTPDDPRQRKPDISKAKEVLGWEPKVKLREGL 341
>WB|WBGene00018737 [details] [associations]
symbol:F53B1.4 species:6239 "Caenorhabditis elegans"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0050662 "coenzyme
binding" evidence=IEA] [GO:0003854 "3-beta-hydroxy-delta5-steroid
dehydrogenase activity" evidence=IEA] [GO:0006694 "steroid
biosynthetic process" evidence=IEA] [GO:0016616 "oxidoreductase
activity, acting on the CH-OH group of donors, NAD or NADP as
acceptor" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0009058 "biosynthetic process" evidence=IEA]
[GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=IEA]
[GO:0009225 "nucleotide-sugar metabolic process" evidence=IEA]
[GO:0008831 "dTDP-4-dehydrorhamnose reductase activity"
evidence=IEA] [GO:0045226 "extracellular polysaccharide
biosynthetic process" evidence=IEA] [GO:0040017 "positive
regulation of locomotion" evidence=IMP] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009225 GO:GO:0040017
GeneTree:ENSGT00530000063128 EMBL:FO081052 GO:GO:0008460
eggNOG:COG1088 HOGENOM:HOG000168006 KO:K01710
PANTHER:PTHR10366:SF41 OMA:AYNDARY HSSP:P26391 PIR:T16444
RefSeq:NP_508390.1 UniGene:Cel.908 ProteinModelPortal:Q20697
SMR:Q20697 STRING:Q20697 PaxDb:Q20697 EnsemblMetazoa:F53B1.4
GeneID:180525 KEGG:cel:CELE_F53B1.4 UCSC:F53B1.4 CTD:180525
WormBase:F53B1.4 InParanoid:Q20697 NextBio:909738 Uniprot:Q20697
Length = 342
Score = 128 (50.1 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 65/249 (26%), Positives = 108/249 (43%)
Query: 110 MGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSLTFFFVSSACIYPEFKQLDTDVKESEA 169
+G IQ N +I +TT + + + GV L +S+ +Y + + T ES +
Sbjct: 104 IGTIQDN--II---STTTLLESIVNSPYKGVKKLVH--ISTDEVYGDSFEDTTPKSESAS 156
Query: 170 WPAEPQDAYGLEKLATEGLCKHYTKDFEIE---CRLVGEKAPAAFSRKAVT-----STDN 221
P P + Y K A E + + Y +++ R+ P K + + D
Sbjct: 157 LP-NPTNPYAASKAACEMVIRSYWHSYKLPYVMVRMNNVYGPRQIHTKLIPKFTKLALDG 215
Query: 222 --FEMWGDGKQTRSLTFIDECVEGVLRL-IKSDFREPLNIGSD-EMVSINEMAEIILSFE 277
+ + GDG TRS ++++C E + R+ ++ E NIG+D EM +I E+ ++I F
Sbjct: 216 KPYPLMGDGLHTRSWMYVEDCSEAITRVALEGTLGEIYNIGTDFEMTNI-ELTKMI-HFT 273
Query: 278 NEKL-------P-IHPIPG-PEGVRGRNSDDTLINEELGWAPTMKQKDELRITY-FWIKE 327
KL P PIP P R D + I +GW T + L T +++K
Sbjct: 274 VSKLLNREPTAPTFAPIPDRPYHDRRYYIDFSKIRNAMGWQCTTPFSEGLMKTIDYYVKL 333
Query: 328 QVEKEKAQG 336
V + QG
Sbjct: 334 HVATARLQG 342
Score = 45 (20.9 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 108 GGMGFIQSNH---SVIMYKNTT-ISFDML 132
GG GFI SN+ + +KNT I++D L
Sbjct: 15 GGCGFIGSNYINFTFNKWKNTKFINYDKL 43
>FB|FBgn0035848 [details] [associations]
symbol:CG7979 species:7227 "Drosophila melanogaster"
[GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0050662
"coenzyme binding" evidence=IEA] [GO:0044237 "cellular metabolic
process" evidence=IEA] InterPro:IPR001509 Pfam:PF01370
InterPro:IPR016040 EMBL:AE014296 eggNOG:COG0451 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0044237
GeneTree:ENSGT00530000063128 GO:GO:0008460 KO:K08678 OMA:LGHENFE
EMBL:AY051913 RefSeq:NP_648182.1 UniGene:Dm.20044 HSSP:P93031
SMR:Q9VSE8 STRING:Q9VSE8 EnsemblMetazoa:FBtr0076690 GeneID:38911
KEGG:dme:Dmel_CG7979 UCSC:CG7979-RA FlyBase:FBgn0035848
InParanoid:Q9VSE8 OrthoDB:EOG45HQCS GenomeRNAi:38911 NextBio:810971
Uniprot:Q9VSE8
Length = 441
Score = 133 (51.9 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 73/316 (23%), Positives = 134/316 (42%)
Query: 25 RISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHE-FHLVD 83
RI G GF+ S++ L + H + N + N EH + HE F L+
Sbjct: 117 RILITGGAGFVGSHLVDDLMVQGHEVIVVDN--FFTGRKRNV-EHWLG----HENFELIH 169
Query: 84 LRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSL 143
++ N L + +D + +LA+ ++ + I NT + ++L A+ VM+
Sbjct: 170 HDIV-NPLFIE--IDEIYHLASPASPPHYMYNPVKTIK-TNTMGTINVLGLAKR--VMAK 223
Query: 144 TFFFVSSACIYPE-FKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIE--- 199
S++ +Y + + P P+ Y K +E L Y K +++
Sbjct: 224 VLI-ASTSEVYGDPTVHPQPETYWGHVNPIGPRACYDEGKRVSETLSYAYAKQEKVQVRV 282
Query: 200 CRLVGEKAPAAFSR--KAVTS-------TDNFEMWGDGKQTRSLTFIDECVEGVLRLIKS 250
R+ P + V++ + ++G+GKQTRS ++ + V+G++ L+ S
Sbjct: 283 ARIFNTYGPRMHMNDGRVVSNFILQALRNETITVYGNGKQTRSFQYVSDLVDGMIALMAS 342
Query: 251 DFREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIPGPEG-VRGRNSDDTLINEELGWA 309
++ +P+N+G+ +I E AEII I E + R D T + L W
Sbjct: 343 NYTQPVNLGNPVEQTIGEFAEIIKKLVGGPSVIKQSKAMEDDPQRRKPDITRARQLLHWE 402
Query: 310 PTMKQKDELR--ITYF 323
P + + L+ I+YF
Sbjct: 403 PKVPLETGLQRTISYF 418
>UNIPROTKB|Q83DM2 [details] [associations]
symbol:CBU_0681 "NAD dependent epimerase/dehydratase
family" species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001509 Pfam:PF01370 InterPro:IPR016040 GO:GO:0003824
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0044237 RefSeq:NP_819711.1
ProteinModelPortal:Q83DM2 GeneID:1208570 KEGG:cbu:CBU_0681
PATRIC:17930045 HOGENOM:HOG000026895 OMA:VSKISHR
ProtClustDB:CLSK914235 BioCyc:CBUR227377:GJ7S-679-MONOMER
Uniprot:Q83DM2
Length = 301
Score = 122 (48.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 37/182 (20%), Positives = 85/182 (46%)
Query: 117 HSVIMYKNTTISFDMLEAARMNGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQD 176
++ ++Y+N + + E + + + ++SS +Y D+D +E P
Sbjct: 78 NAAMLYRNVRMMNVVCEVLQKQAIQQV--IYISSDAVYA-----DSDQPLTETSVTAPTS 130
Query: 177 AYGLEKLATEGLCKHYTKDFEIECRLV------GEKAPA-AFS----RKAVTSTDNFEMW 225
+G+ LA E + + + I ++ G + P + R+ + ++ ++
Sbjct: 131 LHGVMHLAREMMLQSVCSENNISLAILRPSLLYGAEDPHNGYGPNRFRRLADNHESIILF 190
Query: 226 GDGKQTRSLTFIDECVEGVLRLIKSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHP 285
G+G++ R +ID+ E + R+I+ R LNI + +++S ++AE ++ N ++ I P
Sbjct: 191 GEGEEQRDHVYIDDVAEIITRVIQRCSRGVLNIATGQVISFKQLAEKVVQLSNNEVAIQP 250
Query: 286 IP 287
P
Sbjct: 251 SP 252
Score = 44 (20.5 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 25 RISSIGVGGFIPSNIARRLKSE 46
R+ +G GF+ + +RLK E
Sbjct: 13 RVVVLGANGFVGRALCQRLKQE 34
>TIGR_CMR|CBU_0681 [details] [associations]
symbol:CBU_0681 "conserved hypothetical protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001509 Pfam:PF01370 InterPro:IPR016040 GO:GO:0003824
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0044237 RefSeq:NP_819711.1
ProteinModelPortal:Q83DM2 GeneID:1208570 KEGG:cbu:CBU_0681
PATRIC:17930045 HOGENOM:HOG000026895 OMA:VSKISHR
ProtClustDB:CLSK914235 BioCyc:CBUR227377:GJ7S-679-MONOMER
Uniprot:Q83DM2
Length = 301
Score = 122 (48.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 37/182 (20%), Positives = 85/182 (46%)
Query: 117 HSVIMYKNTTISFDMLEAARMNGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQD 176
++ ++Y+N + + E + + + ++SS +Y D+D +E P
Sbjct: 78 NAAMLYRNVRMMNVVCEVLQKQAIQQV--IYISSDAVYA-----DSDQPLTETSVTAPTS 130
Query: 177 AYGLEKLATEGLCKHYTKDFEIECRLV------GEKAPA-AFS----RKAVTSTDNFEMW 225
+G+ LA E + + + I ++ G + P + R+ + ++ ++
Sbjct: 131 LHGVMHLAREMMLQSVCSENNISLAILRPSLLYGAEDPHNGYGPNRFRRLADNHESIILF 190
Query: 226 GDGKQTRSLTFIDECVEGVLRLIKSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHP 285
G+G++ R +ID+ E + R+I+ R LNI + +++S ++AE ++ N ++ I P
Sbjct: 191 GEGEEQRDHVYIDDVAEIITRVIQRCSRGVLNIATGQVISFKQLAEKVVQLSNNEVAIQP 250
Query: 286 IP 287
P
Sbjct: 251 SP 252
Score = 44 (20.5 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 25 RISSIGVGGFIPSNIARRLKSE 46
R+ +G GF+ + +RLK E
Sbjct: 13 RVVVLGANGFVGRALCQRLKQE 34
>WB|WBGene00015298 [details] [associations]
symbol:C01F1.3 species:6239 "Caenorhabditis elegans"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0050662 "coenzyme
binding" evidence=IEA] [GO:0003854 "3-beta-hydroxy-delta5-steroid
dehydrogenase activity" evidence=IEA] [GO:0006694 "steroid
biosynthetic process" evidence=IEA] [GO:0016616 "oxidoreductase
activity, acting on the CH-OH group of donors, NAD or NADP as
acceptor" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0009058 "biosynthetic process" evidence=IEA]
[GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=IEA]
[GO:0009225 "nucleotide-sugar metabolic process" evidence=IEA]
[GO:0008831 "dTDP-4-dehydrorhamnose reductase activity"
evidence=IEA] [GO:0045226 "extracellular polysaccharide
biosynthetic process" evidence=IEA] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009225
GO:GO:0040011 GeneTree:ENSGT00530000063128 KO:K12450 GO:GO:0008460
eggNOG:COG1088 OMA:TARMNNI PANTHER:PTHR10366:SF41 HSSP:P26391
EMBL:FO080258 PIR:T15370 RefSeq:NP_001040727.1
ProteinModelPortal:Q17556 SMR:Q17556 STRING:Q17556
World-2DPAGE:0020:Q17556 PaxDb:Q17556 EnsemblMetazoa:C01F1.3a
GeneID:173762 KEGG:cel:CELE_C01F1.3 UCSC:C01F1.3a CTD:173762
WormBase:C01F1.3a HOGENOM:HOG000017218 InParanoid:Q17556
NextBio:880983 ArrayExpress:Q17556 Uniprot:Q17556
Length = 631
Score = 132 (51.5 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 77/346 (22%), Positives = 137/346 (39%)
Query: 33 GFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHEFHLVDLRVMDNCLR 92
GFI SN + + I+ SD + + ++ L D++ L
Sbjct: 15 GFIGSNFVNYIHDAWPTCNFVNIDKLILNSDTQNVAESVRNSPRYKLVLTDIKNEAAILN 74
Query: 93 M--TSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISF-DMLEAARMNGVMSLTFFFVS 149
+ + +D + + AAD N + +N +SF LE R G + F +S
Sbjct: 75 VFEQNEIDTVIHFAADCTSTRCY--NETAEAVQNNVLSFIQFLETVRTYGKIK-RFVHIS 131
Query: 150 SACIYPEFKQLDTDVKESEAWPAE-----PQDAYGLEKLATEGLCKHYTKDFE---IECR 201
+ +Y D+D+ E+E E P + Y K+A E + Y + + R
Sbjct: 132 TDEVYG-----DSDLSENEQGKVEFSRLVPGNPYAATKIAGEAYVRAYQTQYNLPIVTAR 186
Query: 202 LVGEKAPAAFSRKAVTS-------TDNFEMWGDGKQTRSLTFIDECVEGVLRLI-KSDFR 253
+ P + K V + + G GKQ RS F+D+ G+ + K +
Sbjct: 187 MNNIYGPNQWDVKVVPRFIEIAKVRGEYTIQGSGKQLRSWLFVDDASAGLKAVCEKGELH 246
Query: 254 EPLNIGSDEMVSINEMAEIILSFENEKLP-IHPIPGPEGVRGRNSDDT--LINEE----- 305
E N+G+ ++ ++A+ I + +L H P + + R +D LI+ E
Sbjct: 247 EIYNLGTYYEKNVADLAKTIQEEVDLQLGRAHEPPKYKSIPDRPYNDLRYLISIEKAKND 306
Query: 306 LGWAPTMKQKDELRITYFWIKEQVEKEKAQGIDLSIYGSSNVVATQ 351
LGW PT D +R T + +++ K + ++IYG V +
Sbjct: 307 LGWEPTTSFDDGMRHT---VASALKEHKHVKMHVAIYGGKGYVGQE 349
>UNIPROTKB|Q6MWV3 [details] [associations]
symbol:galE1 "UDP-glucose 4-epimerase" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR001509
Pfam:PF01370 UniPathway:UPA00214 InterPro:IPR016040 GO:GO:0005886
GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 EMBL:BX842583 GO:GO:0044237 GO:GO:0003978
GO:GO:0006012 KO:K01784 PIR:C70562 RefSeq:NP_215015.2
RefSeq:NP_338283.1 RefSeq:YP_006517123.1 HSSP:P09147
ProteinModelPortal:Q6MWV3 SMR:Q6MWV3 PRIDE:Q6MWV3
EnsemblBacteria:EBMYCT00000000637 EnsemblBacteria:EBMYCT00000072644
GeneID:13317242 GeneID:885765 GeneID:926502 KEGG:mtu:Rv3634c
KEGG:mtv:RVBD_3634c PATRIC:18129967 PATRIC:18156681
TubercuList:Rv3634c HOGENOM:HOG000167994 OMA:HSVADPQ
ProtClustDB:CLSK881159 BioCyc:MetaCyc:MONOMER-15254 Uniprot:Q6MWV3
Length = 314
Score = 127 (49.8 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 73/320 (22%), Positives = 125/320 (39%)
Query: 24 LRISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHEFHLVD 83
+R G GFI S + RL ++ H + N + N EH+ ++ H F D
Sbjct: 1 MRALVTGAAGFIGSTLVDRLLADGHSVVGLDN--FATGRATNL-EHLADNS-AHVFVEAD 56
Query: 84 LRVMD-NCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMS 142
+ D + + + + +LAA + + ++ N + + EAAR GV
Sbjct: 57 IVTADLHAILEQHRPEVVFHLAAQIDVRRSV-ADPQFDAAVNVIGTVRLAEAARQTGVRK 115
Query: 143 LTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIECRL 202
+ S IY + T E P +P Y K+A E + + ++C
Sbjct: 116 IVHTS-SGGSIYGTPPEYPTP----ETAPTDPASPYAAGKVAGEIYLNTFRHLYGLDCSH 170
Query: 203 V-------------GEKAPAAFSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLIK 249
+ GE A +A+ S ++GDG TR F+D+ V+ +R +
Sbjct: 171 IAPANVYGPRQDPHGEAGVVAIFAQALLSGKPTRVFGDGTNTRDYVFVDDVVDAFVR-VS 229
Query: 250 SDFREPL--NIGSDEMVSINEMAEIILSFEN--EKLPIHPIPGPEGVRGRNSDDTLINEE 305
+D L NIG+ + S ++ + + + HP P ++ D L
Sbjct: 230 ADVGGGLRFNIGTGKETSDRQLHSAVAAAVGGPDDPEFHP-PRLGDLKRSCLDIGLAERV 288
Query: 306 LGWAPTMKQKDELRIT--YF 323
LGW P ++ D +R T YF
Sbjct: 289 LGWRPQIELADGVRRTVEYF 308
>TIGR_CMR|GSU_0627 [details] [associations]
symbol:GSU_0627 "GDP-fucose synthetase" species:243231
"Geobacter sulfurreducens PCA" [GO:0009103 "lipopolysaccharide
biosynthetic process" evidence=ISS] [GO:0016491 "oxidoreductase
activity" evidence=ISS] [GO:0016857 "racemase and epimerase
activity, acting on carbohydrates and derivatives" evidence=ISS]
InterPro:IPR001509 Pfam:PF01370 InterPro:IPR016040 GO:GO:0003824
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0044237 HOGENOM:HOG000168011
KO:K02377 OMA:IHCAGRV RefSeq:NP_951685.1 ProteinModelPortal:Q74FI1
SMR:Q74FI1 GeneID:2685221 KEGG:gsu:GSU0627 PATRIC:22024005
ProtClustDB:CLSK827960 BioCyc:GSUL243231:GH27-626-MONOMER
Uniprot:Q74FI1
Length = 314
Score = 127 (49.8 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 36/138 (26%), Positives = 64/138 (46%)
Query: 195 DFEIECRLVGEKAPAAFSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLIKS-DFR 253
+F++E V F + +WG G R +D+ + L L++ +
Sbjct: 173 NFDLEKSHVLPALIRKFHEAKIAGAPTVTVWGTGAPLREFIHVDDVADAALYLMRHHEGN 232
Query: 254 EPLNIGSDEMVSINEMA---EIILSFENEKLPIHPIPGPEGVRGRNSDDTLINEELGWAP 310
+ +NIGS E +SI ++A +I++ FE E + P+G + SD + ++ LGW
Sbjct: 233 DIVNIGSGEEISIRDLALLVKIVVGFEGEL--VFDASKPDGTPRKLSDVSRLHS-LGWRH 289
Query: 311 TMKQKDELRITYFWIKEQ 328
+ +D +R TY W Q
Sbjct: 290 RIGLEDGVRETYEWFVGQ 307
>TIGR_CMR|CHY_0979 [details] [associations]
symbol:CHY_0979 "dTDP-glucose 4,6-dehydratase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=ISS]
[GO:0009103 "lipopolysaccharide biosynthetic process" evidence=ISS]
[GO:0019305 "dTDP-rhamnose biosynthetic process" evidence=ISS]
InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0009225 GO:GO:0008460
TIGRFAMs:TIGR01181 eggNOG:COG1088 HOGENOM:HOG000168006 KO:K01710
PANTHER:PTHR10366:SF41 RefSeq:YP_359826.1 ProteinModelPortal:Q3ADF8
SMR:Q3ADF8 STRING:Q3ADF8 GeneID:3726804 KEGG:chy:CHY_0979
PATRIC:21275091 OMA:AEFRPEA ProtClustDB:CLSK2310403
BioCyc:CHYD246194:GJCN-978-MONOMER Uniprot:Q3ADF8
Length = 309
Score = 124 (48.7 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 73/322 (22%), Positives = 130/322 (40%)
Query: 24 LRISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHEFHLVD 83
++I G GFI S R+ + H + Y A D + E + + + ++ + D
Sbjct: 1 MKILVTGGAGFIGSAFVRKYAYD-HELIIVDKLTY--AGDLRRIEEVRDRIKFYKADVAD 57
Query: 84 LRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIM--YKNTTISFDMLEAARMNGVM 141
++ + + + AA+ IQ I K T + ML+A+R G+
Sbjct: 58 KTAIEEIFDKEKP-EAVVHFAAESHVDRSIQDPTPFIETNVKGTQV---MLDASRKYGIE 113
Query: 142 SLTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIE-- 199
F +S+ +Y E + +ES P P Y + K A + L + Y + + +
Sbjct: 114 K--FVHISTDEVYGELGKEGQFTEES---PLRPNSPYSVSKAAADMLARAYHRTYGLPVI 168
Query: 200 ----CRLVG-----EKAPAAFSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLI-K 249
C G EK +KA+ + + ++G G R ++D+C+E V L+ K
Sbjct: 169 VARPCNNYGPWQYPEKLIPVVIKKALNN-EPIPVYGQGLNVREWLYVDDCIEAVYLLLQK 227
Query: 250 SDFREPLNIGS-DEMVSINEMAEII-LSFENEKLP--IHPIPGPEGVRGRNSDDTLINEE 305
E NIGS +E +I + EI+ + + E L + PG + NS +N
Sbjct: 228 GKPGEAYNIGSGEEKGNIEVVKEILRILGKPESLITFVEDRPGHDFRYSLNSKKIKMN-- 285
Query: 306 LGWAPTMKQKDELRITYFWIKE 327
W + + +R W K+
Sbjct: 286 YAWKHKVNFNEGIRFVIDWYKK 307
>TAIR|locus:2202960 [details] [associations]
symbol:RHM1 "rhamnose biosynthesis 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA;ISS]
[GO:0008831 "dTDP-4-dehydrorhamnose reductase activity"
evidence=IEA] [GO:0009225 "nucleotide-sugar metabolic process"
evidence=ISS] [GO:0009507 "chloroplast" evidence=ISM] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0045226
"extracellular polysaccharide biosynthetic process" evidence=IEA]
[GO:0050662 "coenzyme binding" evidence=IEA] [GO:0010253
"UDP-rhamnose biosynthetic process" evidence=IDA;IMP] [GO:0050377
"UDP-glucose 4,6-dehydratase activity" evidence=IDA] [GO:0010280
"UDP-L-rhamnose synthase activity" evidence=IDA] [GO:0010315 "auxin
efflux" evidence=IMP] [GO:0051555 "flavonol biosynthetic process"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0009744 "response to sucrose
stimulus" evidence=RCA] [GO:0009813 "flavonoid biosynthetic
process" evidence=RCA] [GO:0010224 "response to UV-B" evidence=RCA]
InterPro:IPR001509 InterPro:IPR005888 InterPro:IPR005913
Pfam:PF01370 Pfam:PF04321 InterPro:IPR016040 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0009506 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0010315 EMBL:AC007260
GO:GO:0051555 eggNOG:COG1091 GO:GO:0008831 GO:GO:0045226
EMBL:AY042833 EMBL:AY081471 IPI:IPI00543019 PIR:C96814
RefSeq:NP_177978.1 UniGene:At.198 UniGene:At.71030
ProteinModelPortal:Q9SYM5 SMR:Q9SYM5 IntAct:Q9SYM5 STRING:Q9SYM5
PaxDb:Q9SYM5 PRIDE:Q9SYM5 EnsemblPlants:AT1G78570.1 GeneID:844193
KEGG:ath:AT1G78570 TAIR:At1g78570 HOGENOM:HOG000167988
InParanoid:Q9SYM5 KO:K12450 OMA:IKFVDNR PhylomeDB:Q9SYM5
ProtClustDB:PLN02260 BioCyc:ARA:AT1G78570-MONOMER
BioCyc:MetaCyc:AT1G78570-MONOMER Genevestigator:Q9SYM5
GO:GO:0008460 GO:GO:0050377 GO:GO:0010280 GO:GO:0010253
TIGRFAMs:TIGR01181 Uniprot:Q9SYM5
Length = 669
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 78/319 (24%), Positives = 125/319 (39%)
Query: 30 GVGGFIPSNIARRL-KSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHEFHLVDLRVMD 88
G GFI S++A RL +S Y + + L ++ N N F +F D+ D
Sbjct: 13 GAAGFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLNPSKHSPNF--KFVKGDIASAD 70
Query: 89 --NCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFD-MLEAARMNGVMSLTF 145
N L +T G+D + + AA +S KN +LEA ++ G + F
Sbjct: 71 LVNHLLITEGIDTIMHFAAQTHVDNSF--GNSFEFTKNNIYGTHVLLEACKVTGQIR-RF 127
Query: 146 FFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFE---IECRL 202
VS+ +Y E + D V EA P + Y K E L Y + + I R
Sbjct: 128 IHVSTDEVYGETDE-DALVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRG 186
Query: 203 VGEKAPAAFSRKAVTSTDNFEM-------WGDGKQTRSLTFIDECVEGV-LRLIKSDFRE 254
P F K + M GDG RS + ++ E + L K +
Sbjct: 187 NNVYGPNQFPEKLIPKFILLAMRGQVLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVGH 246
Query: 255 PLNIGSDEMVSINEMAEIILSFEN--EKLPIHPIPG-PEGVRGRNSDDTLINEELGWAPT 311
NIG+ + +N++A+ I N + I + P + DD + ++LGW+
Sbjct: 247 VYNIGTKKERRVNDVAKDICKLFNMDPEANIKFVDNRPFNDQRYFLDDQKL-KKLGWSER 305
Query: 312 MKQKDELRITYFWIKEQVE 330
++ L+ T W + E
Sbjct: 306 TTWEEGLKKTMDWYTQNPE 324
>UNIPROTKB|P29782 [details] [associations]
symbol:strE "dTDP-glucose 4,6-dehydratase" species:1911
"Streptomyces griseus" [GO:0008460 "dTDP-glucose 4,6-dehydratase
activity" evidence=ISS] [GO:0019872 "streptomycin biosynthetic
process" evidence=IGI] [GO:0045226 "extracellular polysaccharide
biosynthetic process" evidence=ISS] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 UniPathway:UPA00066
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0009225 GO:GO:0019872 GO:GO:0045226 GO:GO:0008460
TIGRFAMs:TIGR01181 PANTHER:PTHR10366:SF41 EMBL:X62567 PIR:S18617
ProteinModelPortal:P29782 SMR:P29782 Uniprot:P29782
Length = 328
Score = 117 (46.2 bits), Expect = 0.00031, P = 0.00031
Identities = 60/247 (24%), Positives = 99/247 (40%)
Query: 92 RMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSLTFFFVSSA 151
R+ +G D + +LAA+ + + SV + N + +L+AA +GV S F VS+
Sbjct: 71 RVMAGQDQVVHLAAE-SHVDRSLLDASVFVRTNVHGTQTLLDAATRHGVAS--FVQVSTD 127
Query: 152 CIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATE--GLCKHYTKDFEIEC-RLVGEKAP 208
+Y + E E P P Y K + + L H + ++ R P
Sbjct: 128 EVYGSLEH--GSWTEDE--PLRPNSPYSASKASGDLLALAHHVSHGLDVRVTRCSNNYGP 183
Query: 209 AAFSRKAVTS-----TDNFE--MWGDGKQTRSLTFIDECVEGVLRLIKSDFR--EPLNIG 259
F K + D ++GDG R +D+ V G+ +++ R NIG
Sbjct: 184 RQFPEKLIPRFITLLMDGHRVPLYGDGLNVREWLHVDDHVRGI-EAVRTRGRAGRVYNIG 242
Query: 260 SDEMVSINEMAEIILSFENEKL-PIHPIPGPEGVRGRNS-DDTLINEELGWAPTMKQKDE 317
+S E+ ++L + + +G R + D T I ELG+AP + D
Sbjct: 243 GGATLSNKELVGLLLEAAGADWGSVEYVEDRKGHDRRYAVDSTRIQRELGFAPAVDLADG 302
Query: 318 LRITYFW 324
L T W
Sbjct: 303 LAATVAW 309
>TIGR_CMR|GSU_1975 [details] [associations]
symbol:GSU_1975 "NAD-dependent epimerase/dehydratase
family protein" species:243231 "Geobacter sulfurreducens PCA"
[GO:0009225 "nucleotide-sugar metabolic process" evidence=ISS]
[GO:0016829 "lyase activity" evidence=ISS] [GO:0016857 "racemase
and epimerase activity, acting on carbohydrates and derivatives"
evidence=ISS] InterPro:IPR001509 InterPro:IPR005888 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0009225 EMBL:AE017180 GenomeReviews:AE017180_GR
HOGENOM:HOG000167994 GO:GO:0008460 PANTHER:PTHR10366:SF41
HSSP:P95780 ProtClustDB:CLSK864552 RefSeq:NP_953024.1
ProteinModelPortal:Q74BR6 GeneID:2685764 KEGG:gsu:GSU1975
PATRIC:22026813 OMA:AMKGCDV BioCyc:GSUL243231:GH27-1926-MONOMER
InterPro:IPR026390 TIGRFAMs:TIGR04180 Uniprot:Q74BR6
Length = 336
Score = 114 (45.2 bits), Expect = 0.00070, P = 0.00070
Identities = 74/309 (23%), Positives = 126/309 (40%)
Query: 22 GKLRISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCH-EFH 80
GK +I G GFI S++ L R Y T Y + W +H+ ++ +
Sbjct: 5 GK-KILVTGADGFIGSHLTEALLM-RGYDTRA-FVYYNSFNSWGWLDHLDPELLKSLDVF 61
Query: 81 LVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTI--SFDMLEAARMN 138
D+R G D + +LAA + S HS Y +T + + ++++AAR
Sbjct: 62 AGDIRDPHGVREAMKGCDVVLHLAALIA---IPYSYHSPDTYVDTNVKGTLNVVQAAREL 118
Query: 139 GVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEI 198
GV + S++ +Y + V +E P + Q Y K+ + + + F+
Sbjct: 119 GVAKVVH--TSTSEVYGTARF----VPITEEHPLQGQSPYSASKIGADQIAMSFYSSFDT 172
Query: 199 ECRLV------GEKAPA-AFSRKAVT---STDNFEMWGDGKQTRSLTFIDECVEGVLRLI 248
++ G + A AF +T S G TR L ++ + V G + +
Sbjct: 173 PVAIIRPFNTYGPRQSARAFIPTVITQIASGARTLRLGALHPTRDLNYVADTVAGFIAVA 232
Query: 249 KSD--FREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIPGPEGVRGRNSDDTLINEEL 306
+S+ E +NIGS+ +S+ E A +I + I + E +R S+ E L
Sbjct: 233 ESEKSVGEVINIGSNFEISMGETARMIADVMGADVEI--VTDAERLRPDKSEV----ERL 286
Query: 307 GWAPTMKQK 315
WA T K K
Sbjct: 287 -WADTSKAK 294
>TAIR|locus:2099372 [details] [associations]
symbol:RHM3 "rhamnose biosynthesis 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA;ISS]
[GO:0008831 "dTDP-4-dehydrorhamnose reductase activity"
evidence=IEA] [GO:0009225 "nucleotide-sugar metabolic process"
evidence=ISS] [GO:0009507 "chloroplast" evidence=ISM] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0045226
"extracellular polysaccharide biosynthetic process" evidence=IEA]
[GO:0050662 "coenzyme binding" evidence=IEA] [GO:0010280
"UDP-L-rhamnose synthase activity" evidence=ISS;IDA] [GO:0010253
"UDP-rhamnose biosynthetic process" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001509 InterPro:IPR005913 Pfam:PF01370 Pfam:PF04321
InterPro:IPR016040 GO:GO:0005829 GO:GO:0009506 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.40.50.720
GO:GO:0050662 GO:GO:0016829 EMBL:AP002061 GO:GO:0008831
GO:GO:0045226 HOGENOM:HOG000167988 KO:K12450 ProtClustDB:PLN02260
GO:GO:0010280 GO:GO:0010253 eggNOG:COG1088 EMBL:AY078958
EMBL:AY142060 IPI:IPI00525100 RefSeq:NP_188097.1 UniGene:At.27812
ProteinModelPortal:Q9LH76 SMR:Q9LH76 IntAct:Q9LH76 STRING:Q9LH76
PaxDb:Q9LH76 PRIDE:Q9LH76 EnsemblPlants:AT3G14790.1 GeneID:820707
KEGG:ath:AT3G14790 TAIR:At3g14790 InParanoid:Q9LH76 OMA:TARMNNI
PhylomeDB:Q9LH76 Genevestigator:Q9LH76 GermOnline:AT3G14790
Uniprot:Q9LH76
Length = 664
Score = 118 (46.6 bits), Expect = 0.00072, P = 0.00072
Identities = 78/322 (24%), Positives = 122/322 (37%)
Query: 30 GVGGFIPSNIARRL-KSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHEFHLVDLRVMD 88
G GFI S++A RL +S Y + + L ++ N N F +F D+ D
Sbjct: 13 GAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLNPSKSSPNF--KFVKGDIASAD 70
Query: 89 --NCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFD-MLEAARMNGVMSLTF 145
N L +T +D + + AA +S KN +LEA ++ G + F
Sbjct: 71 LVNYLLITEEIDTIMHFAAQTHVDNSF--GNSFEFTKNNIYGTHVLLEACKVTGQIR-RF 127
Query: 146 FFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFE---IECRL 202
VS+ +Y E + D V EA P + Y K E L Y + + I R
Sbjct: 128 IHVSTDEVYGETDE-DASVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRG 186
Query: 203 VGEKAPAAFSRKAVTSTDNFEM-------WGDGKQTRSLTFIDECVEGV-LRLIKSDFRE 254
P F K + M GDG RS + ++ E + L K +
Sbjct: 187 NNVYGPNQFPEKLIPKFILLAMNGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVNH 246
Query: 255 PLNIGSDEMVSINEMAEIILSFENEKLPIHPIPGPEGVRGRNSDDT--LINEE----LGW 308
NIG+ + ++A I ++ I P + V R +D ++++ LGW
Sbjct: 247 VYNIGTTRERRVIDVANDI----SKLFGIDPDSTIQYVENRPFNDQRYFLDDQKLKKLGW 302
Query: 309 APTMKQKDELRITYFWIKEQVE 330
++ LR T W E E
Sbjct: 303 CERTNWEEGLRKTMEWYTENPE 324
>UNIPROTKB|G4MX57 [details] [associations]
symbol:MGG_08012 "UDP-glucose 4-epimerase" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001509 InterPro:IPR005886 Pfam:PF01370
InterPro:IPR016040 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
GO:GO:0044237 GO:GO:0003978 GO:GO:0006012 InterPro:IPR025308
PANTHER:PTHR10366:SF39 Pfam:PF13950 TIGRFAMs:TIGR01179
EMBL:CM001232 KO:K01784 RefSeq:XP_003714962.1
ProteinModelPortal:G4MX57 SMR:G4MX57 EnsemblFungi:MGG_08012T0
GeneID:2678278 KEGG:mgr:MGG_08012 Uniprot:G4MX57
Length = 369
Score = 90 (36.7 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 257 NIGSDEMVSINEMAEIILSFENEKLPIHPIPGPEG-VRGRNSDDTLINEELGWAPTMKQK 315
N+GS ++ EM + S LP +P +G V ++ L N+ELGW ++ +
Sbjct: 279 NLGSGRGSTVFEMIKAFSSVVGRDLPYEVVPRRQGDVLDLTANPALANKELGWKTELRME 338
Query: 316 DELRITYFWIK 326
D + + W+K
Sbjct: 339 DACQDLWKWVK 349
Score = 66 (28.3 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 24/112 (21%), Positives = 47/112 (41%)
Query: 77 HEFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTI--SFDMLEA 134
H + D +D +D++ + AA + +G +S + Y + S +L +
Sbjct: 58 HNVDITDEAALDKVFDAHPEIDSVIHFAA-LKAVG--ESGEIPLEYYRVNVGGSISLLRS 114
Query: 135 ARMNGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATE 186
+ + V ++ F SSA +Y + ++ + E P P + YG K E
Sbjct: 115 MQKHNVCNIVFS--SSATVYGDATRVPNMIPIPEHCPIGPTNTYGRTKSTIE 164
>TIGR_CMR|CBU_0829 [details] [associations]
symbol:CBU_0829 "NAD dependent epimerase/dehydratase
family protein" species:227377 "Coxiella burnetii RSA 493"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0009225
"nucleotide-sugar metabolic process" evidence=ISS]
InterPro:IPR001509 Pfam:PF01370 InterPro:IPR016040 GO:GO:0003824
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0044237 KO:K01784
HOGENOM:HOG000167994 RefSeq:NP_819849.2 ProteinModelPortal:Q83DA9
PRIDE:Q83DA9 GeneID:1208722 KEGG:cbu:CBU_0829 PATRIC:17930355
OMA:ANICAMK ProtClustDB:CLSK914342
BioCyc:CBUR227377:GJ7S-824-MONOMER Uniprot:Q83DA9
Length = 331
Score = 113 (44.8 bits), Expect = 0.00088, P = 0.00088
Identities = 62/275 (22%), Positives = 113/275 (41%)
Query: 83 DLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMS 142
D+ D GVD + + AA + + + S N +F++LE GV
Sbjct: 65 DINQTDILNTALKGVDGVFHFAA-LWLLQCYEYPRSAFQ-TNIQGTFNVLETCVAQGVKR 122
Query: 143 LTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIE--- 199
L F SSA +Y + L+ + +EA P + YG K+A E + Y + +
Sbjct: 123 LVFS--SSASVYGD--ALEEPM--TEAHPFNSRTFYGATKIAGEAMATAYHHRYGLPFVG 176
Query: 200 CRLVGEKAPA--------AFSRKAVTSTDNFE---MWGDGKQTRSLTFIDECVEGVLRLI 248
R + P A K + + D + ++GDG Q ++++C + +
Sbjct: 177 LRYMNVYGPRQDYRGAYIAVIMKMLDALDKGQPMTLYGDGSQAYDFVYVEDCAAANICAM 236
Query: 249 KSD-FREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIP-GPEGVRGRNSDDTLINEEL 306
K+D E N+G+ + SI E+A+ I I +P G V+ R E++
Sbjct: 237 KADTVDEYYNVGTGKRTSILELAKEIQKITGTSDNIQFLPQGTTFVKNRIGCPKKAAEQI 296
Query: 307 GWAPTMKQKDELRITYFWIKEQV-EKEKAQGIDLS 340
G+ + + L+ W + + E E+ + + +S
Sbjct: 297 GFKAEVGLTEGLQRLIEWRRSHIAEVEQRREVAIS 331
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 366 366 0.00084 117 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 39
No. of states in DFA: 620 (66 KB)
Total size of DFA: 259 KB (2139 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.72u 0.09s 29.81t Elapsed: 00:00:01
Total cpu time: 29.73u 0.09s 29.82t Elapsed: 00:00:01
Start: Thu May 9 20:25:23 2013 End: Thu May 9 20:25:24 2013