BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044498
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 550 bits (1417), Expect = e-157, Method: Compositional matrix adjust.
Identities = 273/383 (71%), Positives = 305/383 (79%), Gaps = 29/383 (7%)
Query: 2 GTSYGECTYDKLERESHWPSGKLRISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIA 61
GT YG TY +LERE +WPS L+IS G GGFI S+IARRLK E HY +IA
Sbjct: 8 GTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHY---------VIA 58
Query: 62 SDWNKNEHMMEDMFCHEFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIM 121
SDW KNEHM EDMFC EFHLVDLRVM+NCL++T GVD++ NLAADMGGMGFIQSNHSVIM
Sbjct: 59 SDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIM 118
Query: 122 YKNTTISFDMLEAARMNGVMSLTFFFVSSACIYPEFKQLDT---DVKESEAWPAEPQDAY 178
Y NT ISF+M+EAAR+NG+ FF+ SSACIYPEFKQL+T +KES+AWPAEPQDAY
Sbjct: 119 YNNTMISFNMIEAARINGIKR--FFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAY 176
Query: 179 GLEKLATEGLCKHYTKDFEIECRLVG---------------EKAPAAFSRKAVTSTDNFE 223
GLEKLATE LCKHY KDF IECR+ EKAPAAF RKA TSTD FE
Sbjct: 177 GLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFE 236
Query: 224 MWGDGKQTRSLTFIDECVEGVLRLIKSDFREPLNIGSDEMVSINEMAEIILSFENEKLPI 283
MWGDG QTRS TFIDECVEGVLRL KSDFREP+NIGSDEMVS+NEMAE++LSFE +KLPI
Sbjct: 237 MWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPI 296
Query: 284 HPIPGPEGVRGRNSDDTLINEELGWAPTMKQKDELRITYFWIKEQVEKEKAQGIDLSIYG 343
H IPGPEGVRGRNSD+ LI E+LGWAP M+ K+ LRITYFWIKEQ+EKEKA+G D+S+YG
Sbjct: 297 HHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYG 356
Query: 344 SSNVVATQAPVQLGSPCAEDDKE 366
SS VV TQAPVQLGS A D KE
Sbjct: 357 SSKVVGTQAPVQLGSLRAADGKE 379
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 549 bits (1414), Expect = e-156, Method: Compositional matrix adjust.
Identities = 272/383 (71%), Positives = 305/383 (79%), Gaps = 29/383 (7%)
Query: 2 GTSYGECTYDKLERESHWPSGKLRISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIA 61
GT YG TY +LERE +WPS L+IS G GGFI S+IARRLK E HY +IA
Sbjct: 8 GTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHY---------VIA 58
Query: 62 SDWNKNEHMMEDMFCHEFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIM 121
SDW KNEHM EDMFC EFHLVDLRVM+NCL++T GVD++ NLAADMGGMGFIQSNHSVIM
Sbjct: 59 SDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIM 118
Query: 122 YKNTTISFDMLEAARMNGVMSLTFFFVSSACIYPEFKQLDT---DVKESEAWPAEPQDAY 178
Y NT ISF+M+EAAR+NG+ FF+ SSACIYPEFKQL+T +KES+AWPAEPQDAY
Sbjct: 119 YNNTMISFNMIEAARINGIKR--FFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAY 176
Query: 179 GLEKLATEGLCKHYTKDFEIECRLVG---------------EKAPAAFSRKAVTSTDNFE 223
GLE+LATE LCKHY KDF IECR+ EKAPAAF RKA TSTD FE
Sbjct: 177 GLERLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFE 236
Query: 224 MWGDGKQTRSLTFIDECVEGVLRLIKSDFREPLNIGSDEMVSINEMAEIILSFENEKLPI 283
MWGDG QTRS TFIDECVEGVLRL KSDFREP+NIGSDEMVS+NEMAE++LSFE +KLPI
Sbjct: 237 MWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPI 296
Query: 284 HPIPGPEGVRGRNSDDTLINEELGWAPTMKQKDELRITYFWIKEQVEKEKAQGIDLSIYG 343
H IPGPEGVRGRNSD+ LI E+LGWAP M+ K+ LRITYFWIKEQ+EKEKA+G D+S+YG
Sbjct: 297 HHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYG 356
Query: 344 SSNVVATQAPVQLGSPCAEDDKE 366
SS VV TQAPVQLGS A D KE
Sbjct: 357 SSKVVGTQAPVQLGSLRAADGKE 379
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 548 bits (1413), Expect = e-156, Method: Compositional matrix adjust.
Identities = 272/383 (71%), Positives = 305/383 (79%), Gaps = 29/383 (7%)
Query: 2 GTSYGECTYDKLERESHWPSGKLRISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIA 61
GT YG TY +LERE +WPS L+IS G GGFI S+IARRLK E HY +IA
Sbjct: 8 GTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHY---------VIA 58
Query: 62 SDWNKNEHMMEDMFCHEFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIM 121
SDW KNEHM EDMFC EFHLVDLRVM+NCL++T GVD++ NLAADMGGMGFIQSNHSVIM
Sbjct: 59 SDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIM 118
Query: 122 YKNTTISFDMLEAARMNGVMSLTFFFVSSACIYPEFKQLDT---DVKESEAWPAEPQDAY 178
Y NT ISF+M+EAAR+NG+ FF+ SSACIYPEFKQL+T +KES+AWPAEPQDA+
Sbjct: 119 YNNTMISFNMIEAARINGIKR--FFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAF 176
Query: 179 GLEKLATEGLCKHYTKDFEIECRLVG---------------EKAPAAFSRKAVTSTDNFE 223
GLEKLATE LCKHY KDF IECR+ EKAPAAF RKA TSTD FE
Sbjct: 177 GLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFE 236
Query: 224 MWGDGKQTRSLTFIDECVEGVLRLIKSDFREPLNIGSDEMVSINEMAEIILSFENEKLPI 283
MWGDG QTRS TFIDECVEGVLRL KSDFREP+NIGSDEMVS+NEMAE++LSFE +KLPI
Sbjct: 237 MWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPI 296
Query: 284 HPIPGPEGVRGRNSDDTLINEELGWAPTMKQKDELRITYFWIKEQVEKEKAQGIDLSIYG 343
H IPGPEGVRGRNSD+ LI E+LGWAP M+ K+ LRITYFWIKEQ+EKEKA+G D+S+YG
Sbjct: 297 HHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYG 356
Query: 344 SSNVVATQAPVQLGSPCAEDDKE 366
SS VV TQAPVQLGS A D KE
Sbjct: 357 SSKVVGTQAPVQLGSLRAADGKE 379
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 548 bits (1412), Expect = e-156, Method: Compositional matrix adjust.
Identities = 272/383 (71%), Positives = 304/383 (79%), Gaps = 29/383 (7%)
Query: 2 GTSYGECTYDKLERESHWPSGKLRISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIA 61
GT YG TY +LERE +WPS L+IS G GGFI S+IARRLK E HY +IA
Sbjct: 8 GTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHY---------VIA 58
Query: 62 SDWNKNEHMMEDMFCHEFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIM 121
SDW KNEHM EDMFC EFHLVDLRVM+NCL++T GVD++ NLAADMGGMGFIQSNHSVIM
Sbjct: 59 SDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIM 118
Query: 122 YKNTTISFDMLEAARMNGVMSLTFFFVSSACIYPEFKQLDT---DVKESEAWPAEPQDAY 178
Y NT ISF+M+EAAR+NG+ FF+ SSACIYPEFKQL+T +KES+AWPAEPQDAY
Sbjct: 119 YNNTMISFNMIEAARINGIKR--FFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAY 176
Query: 179 GLEKLATEGLCKHYTKDFEIECRLVG---------------EKAPAAFSRKAVTSTDNFE 223
GLEKLATE LCKHY KDF IECR+ E APAAF RKA TSTD FE
Sbjct: 177 GLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREAAPAAFCRKAQTSTDRFE 236
Query: 224 MWGDGKQTRSLTFIDECVEGVLRLIKSDFREPLNIGSDEMVSINEMAEIILSFENEKLPI 283
MWGDG QTRS TFIDECVEGVLRL KSDFREP+NIGSDEMVS+NEMAE++LSFE +KLPI
Sbjct: 237 MWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPI 296
Query: 284 HPIPGPEGVRGRNSDDTLINEELGWAPTMKQKDELRITYFWIKEQVEKEKAQGIDLSIYG 343
H IPGPEGVRGRNSD+ LI E+LGWAP M+ K+ LRITYFWIKEQ+EKEKA+G D+S+YG
Sbjct: 297 HHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYG 356
Query: 344 SSNVVATQAPVQLGSPCAEDDKE 366
SS VV TQAPVQLGS A D KE
Sbjct: 357 SSKVVGTQAPVQLGSLRAADGKE 379
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 112/231 (48%), Gaps = 29/231 (12%)
Query: 121 MYKNTTI-SFDMLEAARMNGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYG 179
+Y+N + ++ +LEA R GV + F S++ +Y E K + T E +P P YG
Sbjct: 86 IYRNNVLATYRLLEAMRKAGVSRIVF--TSTSTVYGEAKVIPT----PEDYPTHPISLYG 139
Query: 180 LEKLATEGLCKHYTKDFEIEC------RLVGEKAPAA----FSRKAVTSTDNFEMWGDGK 229
KLA E L + Y F+++ ++G ++ F K + + E+ G+G+
Sbjct: 140 ASKLACEALIESYCHTFDMQAWIYRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGE 199
Query: 230 QTRSLTFIDECVEGVLRLIKSDFR-EPLNIGSDEMVSINEMAEIILSFENEKLPIHP-IP 287
Q +S +I +CV+ +L ++ D R NIGS++ + + +AEI+ E+L + P
Sbjct: 200 QNKSYIYISDCVDAMLFGLRGDERVNIFNIGSEDQIKVKRIAEIVC----EELGLSPRFR 255
Query: 288 GPEGVRGRNSDDTLI------NEELGWAPTMKQKDELRITYFWIKEQVEKE 332
G RG D ++ + LGW P ++ +R+ + E +++E
Sbjct: 256 FTGGDRGWKGDVPVMLLSIEKLKRLGWKPRYNSEEAVRMAVRDLVEDLDEE 306
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 98/222 (44%), Gaps = 30/222 (13%)
Query: 123 KNTTISFDMLEAARMNGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEK 182
+N +F++LE AR GV T F SS+ +Y + + T +E P +P YG K
Sbjct: 84 ENVVATFNVLEWARQTGVR--TVVFASSSTVYGDADVIPTPEEE----PYKPISVYGAAK 137
Query: 183 LATEGLCKHYTKDFEIEC------RLVGEKAPAA----FSRKAVTSTDNFEMWGDGKQTR 232
A E +C Y + F + C +VG + F K + + E+ GDG Q +
Sbjct: 138 AAGEVMCATYARLFGVRCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRK 197
Query: 233 SLTFIDECVEGVLRLIKSDFRE------PLNIGSDEMVSINEMAEIILSFENEKLPIHPI 286
S ++ + VE L K F E LN+G+ + V + ++A+I+ + I +
Sbjct: 198 SYLYVRDAVEATLAAWKK-FEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLV 256
Query: 287 PGPEGVRGRNSDD---TLINEEL----GWAPTMKQKDELRIT 321
P RG D TL +L GW PTM + ++ T
Sbjct: 257 PSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAEAVKKT 298
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 98/222 (44%), Gaps = 30/222 (13%)
Query: 123 KNTTISFDMLEAARMNGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEK 182
+N +F++LE AR GV T F SS+ +Y + + T +E P +P YG K
Sbjct: 88 ENVVATFNVLEWARQTGVR--TVVFASSSTVYGDADVIPTPEEE----PYKPISVYGAAK 141
Query: 183 LATEGLCKHYTKDFEIEC------RLVGEKAPAA----FSRKAVTSTDNFEMWGDGKQTR 232
A E +C Y + F + C +VG + F K + + E+ GDG Q +
Sbjct: 142 AAGEVMCATYARLFGVRCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRK 201
Query: 233 SLTFIDECVEGVLRLIKSDFRE------PLNIGSDEMVSINEMAEIILSFENEKLPIHPI 286
S ++ + VE L K F E LN+G+ + V + ++A+I+ + I +
Sbjct: 202 SYLYVRDAVEATLAAWKK-FEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLV 260
Query: 287 PGPEGVRGRNSDD---TLINEEL----GWAPTMKQKDELRIT 321
P RG D TL +L GW PTM + ++ T
Sbjct: 261 PSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAEAVKKT 302
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 113/285 (39%), Gaps = 35/285 (12%)
Query: 78 EFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARM 137
E +L+D R + + + +D + AA +GG+ + + +Y+N I +++ AA
Sbjct: 38 ELNLLDSRAVHDFF-ASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ 96
Query: 138 NGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEP-QDAYGLEKLATEGLCKHYTKDF 196
N V L F+ S+CIYP+ + E EP + Y + ++A LC+ Y + +
Sbjct: 97 NDVNKL--LFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIARIAGIKLCESYNRQY 154
Query: 197 EIECRLV----------------GEKAPAAFSR---KAVTSTDNFEMWGDGKQTRSLTFI 237
+ R V PA R S + +WG G R +
Sbjct: 155 GRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHV 214
Query: 238 DECVEGVLRLIK----------SDFREPLNIGSDEMVSINEMAEIILSFENEK-LPIHPI 286
D+ + +++ +N+G+ +I E+A+ I K +
Sbjct: 215 DDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDA 274
Query: 287 PGPEGVRGRNSDDTLINEELGWAPTMKQKDELRITYFWIKEQVEK 331
P+G + D T ++ +LGW + + L TY W E ++
Sbjct: 275 SKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLENQDR 318
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 113/285 (39%), Gaps = 35/285 (12%)
Query: 78 EFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARM 137
E +L+D R + + + +D + AA +GG+ + + +Y+N I +++ AA
Sbjct: 38 ELNLLDSRAVHDFF-ASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ 96
Query: 138 NGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEP-QDAYGLEKLATEGLCKHYTKDF 196
N V L F+ S+CIYP+ + E EP + Y + K+A LC+ Y + +
Sbjct: 97 NDVNKL--LFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY 154
Query: 197 EIECRLV----------------GEKAPAAFSRKAVTSTDN---FEMWGDGKQTRSLTFI 237
+ R V PA R + N +WG G R +
Sbjct: 155 GRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHV 214
Query: 238 DECVEGVLRLIK----------SDFREPLNIGSDEMVSINEMAEIILSFENEK-LPIHPI 286
D+ + +++ +N+G+ +I E+A+ I K +
Sbjct: 215 DDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDA 274
Query: 287 PGPEGVRGRNSDDTLINEELGWAPTMKQKDELRITYFWIKEQVEK 331
P+G + D T ++ +LGW + + L TY W E ++
Sbjct: 275 SKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLENQDR 318
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 134/325 (41%), Gaps = 33/325 (10%)
Query: 25 RISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHE-FHLVD 83
RI G GF+ S++ +L + H T + N + + +E HE F L++
Sbjct: 7 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNF-------FTGRKRNVEHWIGHENFELIN 59
Query: 84 LRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSL 143
V++ + VD + +LA+ ++ N + NT + +ML A+ G
Sbjct: 60 HDVVEP---LYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGA--- 112
Query: 144 TFFFVSSACIY--PEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIECR 201
S++ +Y PE D P P+ Y K E +C Y K +E R
Sbjct: 113 RLLLASTSEVYGDPEVHPQSEDY-WGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVR 171
Query: 202 LV-------------GEKAPAAFSRKAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLI 248
+ + + F +A+ + ++G G QTR+ ++ + V G++ L+
Sbjct: 172 VARIFNTFGPRMHMNDGRVVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVALM 230
Query: 249 KSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIP-GPEGVRGRNSDDTLINEELG 307
S+ P+N+G+ E +I E A++I + I + + + R D LG
Sbjct: 231 NSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLG 290
Query: 308 WAPTMKQKDELRITYFWIKEQVEKE 332
W P + ++ L + ++++E +
Sbjct: 291 WEPVVPLEEGLNKAIHYFRKELEYQ 315
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 113/285 (39%), Gaps = 35/285 (12%)
Query: 78 EFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARM 137
E +L+D R + + + +D + AA +GG+ + + +Y+N I +++ AA
Sbjct: 38 ELNLLDSRAVHDFF-ASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ 96
Query: 138 NGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEP-QDAYGLEKLATEGLCKHYTKDF 196
N V L F+ ++CIYP+ + E EP + Y + K+A LC+ Y + +
Sbjct: 97 NDVNKL--LFLGASCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY 154
Query: 197 EIECRLV----------------GEKAPAAFSR---KAVTSTDNFEMWGDGKQTRSLTFI 237
+ R V PA R S + +WG G R +
Sbjct: 155 GRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHV 214
Query: 238 DECVEGVLRLIK----------SDFREPLNIGSDEMVSINEMAEIILSFENEK-LPIHPI 286
D+ + +++ +N+G+ +I E+A+ I K +
Sbjct: 215 DDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDA 274
Query: 287 PGPEGVRGRNSDDTLINEELGWAPTMKQKDELRITYFWIKEQVEK 331
P+G + D T ++ +LGW + + L TY W E ++
Sbjct: 275 SKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLENQDR 318
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 112/285 (39%), Gaps = 35/285 (12%)
Query: 78 EFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARM 137
E +L+D R + + + +D + AA +GG+ + + +Y+N I +++ AA
Sbjct: 38 ELNLLDSRAVHDFF-ASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ 96
Query: 138 NGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEP-QDAYGLEKLATEGLCKHYTKDF 196
N V L F+ S+CIYP+ + E EP + Y + K+A LC+ Y + +
Sbjct: 97 NDVNKL--LFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY 154
Query: 197 EIECRLV----------------GEKAPAAFSR---KAVTSTDNFEMWGDGKQTRSLTFI 237
+ R V PA R + +WG G R +
Sbjct: 155 GRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHV 214
Query: 238 DECVEGVLRLIK----------SDFREPLNIGSDEMVSINEMAEIILSFENEK-LPIHPI 286
D+ + +++ +N+G+ +I E+A+ I K +
Sbjct: 215 DDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDA 274
Query: 287 PGPEGVRGRNSDDTLINEELGWAPTMKQKDELRITYFWIKEQVEK 331
P+G + D T ++ +LGW + + L TY W E ++
Sbjct: 275 SKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLENQDR 318
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 113/285 (39%), Gaps = 35/285 (12%)
Query: 78 EFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARM 137
E +L+D R + + + +D + AA +GG+ + + +Y+N I +++ AA
Sbjct: 38 ELNLLDSRAVHDFF-ASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ 96
Query: 138 NGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEP-QDAYGLEKLATEGLCKHYTKDF 196
N V L F+ S+CIYP+ + E EP + Y + K+A LC+ Y + +
Sbjct: 97 NDVNKL--LFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY 154
Query: 197 EIECRLV----------------GEKAPAAFSRKAVTSTDN---FEMWGDGKQTRSLTFI 237
+ R V PA R + N +WG G R +
Sbjct: 155 GRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHV 214
Query: 238 DECVEGVLRLIK----------SDFREPLNIGSDEMVSINEMAEIILSFENEK-LPIHPI 286
D+ + +++ +N+G+ +I ++A+ I K +
Sbjct: 215 DDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRDLAQTIAKVVGYKGRVVFDA 274
Query: 287 PGPEGVRGRNSDDTLINEELGWAPTMKQKDELRITYFWIKEQVEK 331
P+G + D T ++ +LGW + + L TY W E ++
Sbjct: 275 SKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLENQDR 318
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/339 (21%), Positives = 136/339 (40%), Gaps = 33/339 (9%)
Query: 11 DKLERESHWPSGKLRISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHM 70
+ L + H + RI G GF+ S++ +L + H T + N + +
Sbjct: 15 ENLYFQGHXEKDRKRILITGGAGFVGSHLTDKLXXDGHEVTVVDNF-------FTGRKRN 67
Query: 71 MEDMFCHE-FHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISF 129
+E HE F L++ V++ + VD + +LA+ + N + NT +
Sbjct: 68 VEHWIGHENFELINHDVVE---PLYIEVDQIYHLASPASPPNY-XYNPIKTLKTNTIGTL 123
Query: 130 DMLEAARMNGVMSLTFFFVSSACIY--PEFKQLDTDVKESEAWPAEPQDAYGLEKLATEG 187
+ L A+ G L S++ +Y PE D P P+ Y K E
Sbjct: 124 NXLGLAKRVGARLL---LASTSEVYGDPEVHPQSEDYW-GHVNPIGPRACYDEGKRVAET 179
Query: 188 LCKHYTKDFEIECRLV-------------GEKAPAAFSRKAVTSTDNFEMWGDGKQTRSL 234
C Y K +E R+ + + F +A+ + ++G G QTR+
Sbjct: 180 XCYAYXKQEGVEVRVARIFNTFGPRXHXNDGRVVSNFILQALQG-EPLTVYGSGSQTRAF 238
Query: 235 TFIDECVEGVLRLIKSDFREPLNIGSDEMVSINEMAEIILSFENEKLPIHPIP-GPEGVR 293
++ + V G++ L S+ P+N+G+ E +I E A++I + I + + +
Sbjct: 239 QYVSDLVNGLVALXNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQ 298
Query: 294 GRNSDDTLINEELGWAPTMKQKDELRITYFWIKEQVEKE 332
R D LGW P + ++ L + ++++E +
Sbjct: 299 KRKPDIKKAKLXLGWEPVVPLEEGLNKAIHYFRKELEYQ 337
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 112/285 (39%), Gaps = 35/285 (12%)
Query: 78 EFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARM 137
E +L+D R + + + +D + AA +GG+ + + +Y+N I +++ AA
Sbjct: 38 ELNLLDSRAVHDFF-ASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ 96
Query: 138 NGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEP-QDAYGLEKLATEGLCKHYTKDF 196
N V L F+ S+CIYP+ + E EP + + K+A LC+ Y + +
Sbjct: 97 NDVNKL--LFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPEAIAKIAGIKLCESYNRQY 154
Query: 197 EIECRLV----------------GEKAPAAFSR---KAVTSTDNFEMWGDGKQTRSLTFI 237
+ R V PA R S + +WG G R +
Sbjct: 155 GRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHV 214
Query: 238 DECVEGVLRLIK----------SDFREPLNIGSDEMVSINEMAEIILSFENEK-LPIHPI 286
D+ + +++ +N+G+ +I E+A+ I K +
Sbjct: 215 DDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDA 274
Query: 287 PGPEGVRGRNSDDTLINEELGWAPTMKQKDELRITYFWIKEQVEK 331
P+G + D T ++ +LGW + + L TY W E ++
Sbjct: 275 SKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLENQDR 318
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 117/275 (42%), Gaps = 36/275 (13%)
Query: 75 FCHEFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEA 134
FC F D+R + C ++ GVD++ + AA +G + + N T ++L A
Sbjct: 81 FC--FIEGDIRDLTTCEQVMKGVDHVLHQAA-LGSVPRSIVDPITTNATNITGFLNILHA 137
Query: 135 ARMNGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTK 194
A+ V S T+ +S+ Y + L V+E+ P P Y + K E + Y +
Sbjct: 138 AKNAQVQSFTY--AASSSTYGDHPAL-PKVEENIGNPLSP---YAVTKYVNEIYAQVYAR 191
Query: 195 DFEIECRLVGEKAPAAFSRK----------------AVTSTDNFEMWGDGKQTRSLTFID 238
+ + +G + F R+ A+ D+ + GDG+ +R +ID
Sbjct: 192 TYGFKT--IGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYID 249
Query: 239 ECVE-GVLRLIKSDFREP--LNIGSDEMVSINEMA-----EIILSFENEKLPIHPIPGPE 290
++ +L + D + N+ + ++NE++ E+ L +KL I
Sbjct: 250 NVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRS 309
Query: 291 G-VRGRNSDDTLINEELGWAPTMKQKDELRITYFW 324
G VR +D T + L + P +K ++ LR++ W
Sbjct: 310 GDVRASQADVTKAIDLLKYRPNIKIREGLRLSMPW 344
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 130/315 (41%), Gaps = 22/315 (6%)
Query: 24 LRISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHEFHLVD 83
+++ G GFI SN R + E+H + N + N +ED + F D
Sbjct: 4 MKLLVTGGMGFIGSNFIRYI-LEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGD 62
Query: 84 LRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMSL 143
+ + + VD + +LAA+ I S+ + ++ N ++ +LE+ R +
Sbjct: 63 VADYELVKELVRKVDGVVHLAAESHVDRSI-SSPEIFLHSNVIGTYTLLESIRRENP-EV 120
Query: 144 TFFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIEC--- 200
F VS+ +Y + L E++ P Y K A++ L +T+ + +
Sbjct: 121 RFVHVSTDEVYGDI--LKGSFTENDR--LMPSSPYSATKAASDMLVLGWTRTYNLNASIT 176
Query: 201 RLVGEKAPAAFSRKAVTSTD-------NFEMWGDGKQTRSLTFIDECVEGV-LRLIKSDF 252
R P F K + T ++G GK R ++++ V + L L+K +
Sbjct: 177 RCTNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKGES 236
Query: 253 REPLNIGSDEMVSINEMAEIILSF--ENEKLPIHPIPGPEGVRGRNSDDTL-INEELGWA 309
RE NI + E + E+ +IIL + E+L I + G R S D+ I +L W
Sbjct: 237 REIYNISAGEEKTNLEVVKIILRLMGKGEEL-IELVEDRPGHDLRYSLDSWKITRDLKWR 295
Query: 310 PTMKQKDELRITYFW 324
P + ++ T W
Sbjct: 296 PKYTFDEGIKKTIDW 310
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 117/275 (42%), Gaps = 36/275 (13%)
Query: 75 FCHEFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEA 134
FC F D+R + C ++ GVD++ + AA +G + + N T ++L A
Sbjct: 94 FC--FIEGDIRDLTTCEQVMKGVDHVLHQAA-LGSVPRSIVDPITTNATNITGFLNILHA 150
Query: 135 ARMNGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTK 194
A+ V S T+ +S+ Y + L V+E+ P P Y + K E + Y +
Sbjct: 151 AKNAQVQSFTY--AASSSTYGDHPAL-PKVEENIGNPLSP---YAVTKYVNEIYAQVYAR 204
Query: 195 DFEIECRLVGEKAPAAFSRK----------------AVTSTDNFEMWGDGKQTRSLTFID 238
+ + +G + F R+ A+ D+ + GDG+ +R +ID
Sbjct: 205 TYGFKT--IGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYID 262
Query: 239 ECVE-GVLRLIKSDFREP--LNIGSDEMVSINEMA-----EIILSFENEKLPIHPIPGPE 290
++ +L + D + N+ + ++NE++ E+ L +KL I
Sbjct: 263 NVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRS 322
Query: 291 G-VRGRNSDDTLINEELGWAPTMKQKDELRITYFW 324
G VR +D T + L + P +K ++ LR++ W
Sbjct: 323 GDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPW 357
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 114/267 (42%), Gaps = 34/267 (12%)
Query: 83 DLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMS 142
D+R + C ++ GVD++ + AA +G + + N T ++L AA+ V S
Sbjct: 87 DIRDLTTCEQVMKGVDHVLHQAA-LGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQS 145
Query: 143 LTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIECRL 202
T+ +S+ Y + L V+E+ P P Y + K E + Y + + +
Sbjct: 146 FTY--AASSSTYGDHPAL-PKVEENIGNPLSP---YAVTKYVNEIYAQVYARTYGFKT-- 197
Query: 203 VGEKAPAAFSRK----------------AVTSTDNFEMWGDGKQTRSLTFIDECVE-GVL 245
+G + F R+ A+ D+ + GDG+ +R +ID ++ +L
Sbjct: 198 IGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNIL 257
Query: 246 RLIKSDFREP--LNIGSDEMVSINEMA-----EIILSFENEKLPIHPIPGPEG-VRGRNS 297
+ D + N+ + ++NE++ E+ L +KL I G VR +
Sbjct: 258 SALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQA 317
Query: 298 DDTLINEELGWAPTMKQKDELRITYFW 324
D T + L + P +K ++ LR++ W
Sbjct: 318 DVTKAIDLLKYRPNIKIREGLRLSMPW 344
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 114/267 (42%), Gaps = 34/267 (12%)
Query: 83 DLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAARMNGVMS 142
D+R + C ++ GVD++ + AA +G + + N T ++L AA+ V S
Sbjct: 81 DIRDLTTCEQVMKGVDHVLHQAA-LGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQS 139
Query: 143 LTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIECRL 202
T+ +S+ Y + L V+E+ P P Y + K E + Y + + +
Sbjct: 140 FTY--AASSSTYGDHPAL-PKVEENIGNPLSP---YAVTKYVNEIYAQVYARTYGFKT-- 191
Query: 203 VGEKAPAAFSRK----------------AVTSTDNFEMWGDGKQTRSLTFIDECVE-GVL 245
+G + F R+ A+ D+ + GDG+ +R +ID ++ +L
Sbjct: 192 IGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNIL 251
Query: 246 RLIKSDFREP--LNIGSDEMVSINEMA-----EIILSFENEKLPIHPIPGPEG-VRGRNS 297
+ D + N+ + ++NE++ E+ L +KL I G VR +
Sbjct: 252 SALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQA 311
Query: 298 DDTLINEELGWAPTMKQKDELRITYFW 324
D T + L + P +K ++ LR++ W
Sbjct: 312 DVTKAIDLLKYRPNIKIREGLRLSMPW 338
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 72/170 (42%), Gaps = 20/170 (11%)
Query: 116 NHSVIMYKNTTISFDMLEAARMNGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQ 175
N ++M N ++LE AR + + SSA +Y K + V ++E+ P+
Sbjct: 107 NQELVMKTNYQAFLNLLEIARSKKAKVI---YASSAGVYGNTKAPNV-VGKNES----PE 158
Query: 176 DAYGLEKLAT-EGLCKHYTKDFEIECRLVGEKAPAAFSRKAVTST-----------DNFE 223
+ YG KL E + H + ++ R P F ++ S +
Sbjct: 159 NVYGFSKLCMDEFVLSHSNDNVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVK 218
Query: 224 MWGDGKQTRSLTFIDECVEGVLRLIKSDFREPLNIGSDEMVSINEMAEII 273
++ G+Q R +I++ ++ ++ +K+ N+G + S NE+ I+
Sbjct: 219 LFEFGEQLRDFVYIEDVIQANVKAMKAQKSGVYNVGYSQARSYNEIVSIL 268
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 123/325 (37%), Gaps = 31/325 (9%)
Query: 24 LRISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDM-------FC 76
+R+ G GFI S+ R+L + + + + + + N + + F
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 77 HEFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAAR 136
H D+R R GVD + + AA+ I + SV N + +L+ A
Sbjct: 61 HG----DIRDAGLLARELRGVDAIVHFAAESHVDRSI-AGASVFTETNVQGTQTLLQCAV 115
Query: 137 MNGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDF 196
GV + VS+ +Y +D+ +E+ P EP Y K ++ + + Y + +
Sbjct: 116 DAGVGRVVH--VSTNQVY---GSIDSG-SWTESSPLEPNSPYAASKAGSDLVARAYHRTY 169
Query: 197 EIECRLV---GEKAPAAFSRKAV-------TSTDNFEMWGDGKQTRSLTFIDECVEGV-L 245
++ R+ P K + ++GDG R D+ G+ L
Sbjct: 170 GLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIAL 229
Query: 246 RLIKSDFREPLNIGSDEMVSINEMAEIIL-SFENEKLPIHPIPGPEGVRGRNS-DDTLIN 303
L E +IG ++ E+ I+L S + + + +G R S D I
Sbjct: 230 VLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIE 289
Query: 304 EELGWAPTMKQKDELRITYFWIKEQ 328
ELG+ P + D L T W +E
Sbjct: 290 RELGYRPQVSFADGLARTVRWYREN 314
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 123/325 (37%), Gaps = 31/325 (9%)
Query: 24 LRISSIGVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDM-------FC 76
+R+ G GFI S+ R+L + + + + + + N + + F
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 77 HEFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAAR 136
H D+R R GVD + + AA+ I + SV N + +L+ A
Sbjct: 61 HG----DIRDAGLLARELRGVDAIVHFAAESHVDRSI-AGASVFTETNVQGTQTLLQCAV 115
Query: 137 MNGVMSLTFFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDF 196
GV + VS+ +Y +D+ +E+ P EP Y K ++ + + Y + +
Sbjct: 116 DAGVGRVVH--VSTDEVY---GSIDSG-SWTESSPLEPNSPYAASKAGSDLVARAYHRTY 169
Query: 197 EIECRLV---GEKAPAAFSRKAV-------TSTDNFEMWGDGKQTRSLTFIDECVEGV-L 245
++ R+ P K + ++GDG R D+ G+ L
Sbjct: 170 GLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIAL 229
Query: 246 RLIKSDFREPLNIGSDEMVSINEMAEIIL-SFENEKLPIHPIPGPEGVRGRNS-DDTLIN 303
L E +IG ++ E+ I+L S + + + +G R S D I
Sbjct: 230 VLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIE 289
Query: 304 EELGWAPTMKQKDELRITYFWIKEQ 328
ELG+ P + D L T W +E
Sbjct: 290 RELGYRPQVSFADGLARTVRWYREN 314
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 76 CHEFHLVDLRVMDNCLRMTSGVDNMSNLAADMGGMGFIQSNHSVIMYKNTTISFDMLEAA 135
C + L D ++ M +G D + +L GG+ ++ I+ N +++ EAA
Sbjct: 47 CVQCDLADANAVN---AMVAGCDGIVHL----GGIS-VEKPFEQILQGNIIGLYNLYEAA 98
Query: 136 RMNGVMSLTFFFVSSAC-IYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTK 194
R +G + F + YP+ ++L DV PA P YG+ K E L + Y
Sbjct: 99 RAHGQPRIVFASSNHTIGYYPQTERLGPDV------PARPDGLYGVSKCFGENLARMYFD 152
Query: 195 DFEIECRLV 203
F E LV
Sbjct: 153 KFGQETALV 161
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 15/191 (7%)
Query: 146 FFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLC-KHYTKDFEIECRLV- 203
V S C + Q DT + E P P+ Y K+ E + H E +V
Sbjct: 114 VVVGSTCEV--YGQADT-LPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVR 170
Query: 204 -------GEKAPAAFSR--KAVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLIKSDFRE 254
GE+ A R + + + + GDG+Q R T+I + V+ ++ L
Sbjct: 171 FFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLPS 230
Query: 255 PLNIGSDEMVSINEMAEIILSFENEKLPIHPIPGPEGVRGRNSDDTLINEELG-WAPTMK 313
+N GS + +S+N++ I+ + P P + +D L ++G + +
Sbjct: 231 VVNFGSGQSLSVNDVIRILQATSPAAEVARKQPRPNEITEFRADTALQTRQIGERSGGIG 290
Query: 314 QKDELRITYFW 324
++ +R+T W
Sbjct: 291 IEEGIRLTLEW 301
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 127/313 (40%), Gaps = 46/313 (14%)
Query: 30 GVGGFIPSNIARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHEFHLV--DLRVM 87
GV GFI SN+ L + N + ++ ++ + F + D+R +
Sbjct: 34 GVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNL 93
Query: 88 DNCLRMTSGVDNMSNLAADMGGMGFI-QSNHSVIMYKNTTIS--FDMLEAARMNGVMSLT 144
D+C +GVD + + AA +G + +S + I T I +ML AAR V S T
Sbjct: 94 DDCNNACAGVDYVLHQAA----LGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFT 149
Query: 145 FFFVSSACIYPEFKQLDTDVKESEAWPAEPQDAYGLEKLATEGLCKHYTKDFEIECRLVG 204
+ +S+ Y + L V+++ P P Y + K E +++ + +G
Sbjct: 150 --YAASSSTYGDHPGL-PKVEDTIGKPLSP---YAVTKYVNELYADVFSRCYGFST--IG 201
Query: 205 EKAPAAFSRK----------------AVTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLI 248
+ F R+ ++ D+ + GDG+ +R +I+ V+ L
Sbjct: 202 LRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAA 261
Query: 249 KS--DFREPL-NIGSDEMVSINE--------MAEIILSFENEKLPIHPIPGPEGVRGRNS 297
+ D R + NI S+N+ +AE +S+ E P++ VR +
Sbjct: 262 TAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHRE--PVYRDFREGDVRHSLA 319
Query: 298 DDTLINEELGWAP 310
D + + LG+AP
Sbjct: 320 DISKAAKLLGYAP 332
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 120 IMYKNTTISFDMLEAARMNGVMSLTFFFVSSAC-IYPEFKQLDTDVKESEAWPAEPQDAY 178
I+ N ++++ EAAR G + F + YP ++DT+V P P Y
Sbjct: 82 ILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTEV------PRRPDSLY 135
Query: 179 GLEKLATEGLCKHYTKDFEIE 199
GL K E L Y F+IE
Sbjct: 136 GLSKCFGEDLASLYYHKFDIE 156
>pdb|3NXL|A Chain A, Crystal Structure Of Glucarate Dehydratase From
Burkholderia Cepacia Complexed With Magnesium
pdb|3NXL|B Chain B, Crystal Structure Of Glucarate Dehydratase From
Burkholderia Cepacia Complexed With Magnesium
pdb|3NXL|C Chain C, Crystal Structure Of Glucarate Dehydratase From
Burkholderia Cepacia Complexed With Magnesium
pdb|3NXL|D Chain D, Crystal Structure Of Glucarate Dehydratase From
Burkholderia Cepacia Complexed With Magnesium
Length = 475
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 40 ARRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHEFHLVDLRVMDNCLRMTSGVDN 99
R + +E +T IP A IA+DW + +H + VD+ + D G
Sbjct: 291 GREVXAEFRRATGIPTATNXIATDWRQXDHAV------RLQAVDIPLADPHFWTXQGSVR 344
Query: 100 MSNLAADMG 108
++ L D G
Sbjct: 345 LAQLCRDWG 353
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 228 GKQTRSLTFIDECVEGVLRLIKSDFR----EPLNIGSDEM-VSINEMAEIIL-SFENEKL 281
GKQ R T I + +E + R+I++ E +NIG+ E SI E+ E++L SFE L
Sbjct: 531 GKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPL 590
Query: 282 PIHPIP 287
H P
Sbjct: 591 RHHFPP 596
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 228 GKQTRSLTFIDECVEGVLRLIKSDFR----EPLNIGSDEM-VSINEMAEIIL-SFENEKL 281
GKQ R T I + +E + R+I++ E +NIG+ E SI E+ E++L SFE L
Sbjct: 229 GKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPL 288
Query: 282 PIHPIPGPEGVR 293
H P G R
Sbjct: 289 R-HHFPPFAGFR 299
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 228 GKQTRSLTFIDECVEGVLRLIKSDFR----EPLNIGSDEM-VSINEMAEIIL-SFENEKL 281
GKQ R T I + +E + R+I++ E +NIG+ E SI E+ E++L SFE L
Sbjct: 229 GKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPL 288
Query: 282 PIHPIPGPEGVR 293
H P G R
Sbjct: 289 R-HHFPPFAGFR 299
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 228 GKQTRSLTFIDECVEGVLRLIKSDFR----EPLNIGSDEM-VSINEMAEIIL-SFENEKL 281
GKQ R T I + +E + R+I++ E +NIG+ E SI E+ E++L SFE L
Sbjct: 229 GKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPL 288
Query: 282 PIHPIPGPEGVR 293
H P G R
Sbjct: 289 R-HHFPPFAGFR 299
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 228 GKQTRSLTFIDECVEGVLRLIKSDFR----EPLNIGSDEM-VSINEMAEIIL-SFENEKL 281
GKQ R T I + +E + R+I++ E +NIG+ E SI E+ E++L SFE L
Sbjct: 229 GKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPL 288
Query: 282 PIHPIPGPEGVR 293
H P G R
Sbjct: 289 R-HHFPPFAGFR 299
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 228 GKQTRSLTFIDECVEGVLRLIKSDFR----EPLNIGSDEM-VSINEMAEIIL-SFENEKL 281
GKQ R T I + +E + R+I++ E +NIG+ E SI E+ E++L SFE L
Sbjct: 229 GKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPL 288
Query: 282 PIHPIPGPEGVR 293
H P G R
Sbjct: 289 R-HHFPPFAGFR 299
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 228 GKQTRSLTFIDECVEGVLRLIKSDFR----EPLNIGSDEM-VSINEMAEIIL-SFENEKL 281
GKQ R T I + +E + R+I++ E +NIG+ E SI E+ E++L SFE L
Sbjct: 216 GKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPL 275
Query: 282 PIHPIPGPEGVR 293
H P G R
Sbjct: 276 R-HHFPPFAGFR 286
>pdb|3P0W|A Chain A, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
pdb|3P0W|B Chain B, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
pdb|3P0W|C Chain C, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
pdb|3P0W|D Chain D, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
Length = 470
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 41 RRLKSERHYSTSIPNALYIIASDWNKNEHMMEDMFCHEFHLVDLRVMDNCLRMTSGVDNM 100
R + +E +T IP A +IA+DW + H + + H VD+ + D G +
Sbjct: 288 REVMAEFKRATGIPTATNMIATDWRQMGHAV------QLHAVDIPLADPHFWTMQGSVRV 341
Query: 101 SNLAADMG 108
+ L + G
Sbjct: 342 AQLCDEWG 349
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 23/141 (16%)
Query: 216 VTSTDNFEMWGDGKQTRSLTFIDECVEGVLRLIKSD----FREPLNIGS-DEMVSINEMA 270
+ +N + G Q R+ T++D+ + ++++I++ + NIG+ + S+ E+A
Sbjct: 227 IVRGENISLVDGGSQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELA 286
Query: 271 EIILSFENEKLP--------IHPIPGPEGVRGRNSDDTLIN---------EELGWAPTMK 313
+L E P + + G N + N +ELGWAP
Sbjct: 287 NKMLELAAE-FPEYADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFT 345
Query: 314 QKDELRITYFWIKEQVEKEKA 334
D LR + + V +A
Sbjct: 346 FDDALRQIFEAYRGHVADARA 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,996,047
Number of Sequences: 62578
Number of extensions: 452523
Number of successful extensions: 1037
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1002
Number of HSP's gapped (non-prelim): 46
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)