BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044500
(86 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 85.1 bits (209), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 52/77 (67%)
Query: 4 DDMYDTYGSLDEVELFTDAVKRWDTGAMVKLPCYMQICYLAMFNFGNDLAYYDLKIHGLN 63
DD+YD YG+LDE+ELFTD KRWDT ++ +LP YMQ+CY + N+ +D AY LK HG
Sbjct: 302 DDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFF 361
Query: 64 LLSNIKNEVANNVLGYF 80
L ++ V + V YF
Sbjct: 362 CLQYLRKSVVDLVEAYF 378
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 82.8 bits (203), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/62 (58%), Positives = 50/62 (80%)
Query: 4 DDMYDTYGSLDEVELFTDAVKRWDTGAMVKLPCYMQICYLAMFNFGNDLAYYDLKIHGLN 63
DD+YD YG+LDE+ELFTDAV+RWD A+ LP YM++C+LA++N N++AY +LK G N
Sbjct: 305 DDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGEN 364
Query: 64 LL 65
+L
Sbjct: 365 IL 366
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 80.9 bits (198), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 48/60 (80%)
Query: 4 DDMYDTYGSLDEVELFTDAVKRWDTGAMVKLPCYMQICYLAMFNFGNDLAYYDLKIHGLN 63
DD++D YG+L+E++LFT A++RWD +M +LP YMQICYLA+FNF N++AY L+ G +
Sbjct: 323 DDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFD 382
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 75.1 bits (183), Expect = 9e-15, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 4 DDMYDTYGSLDEVELFTDAVKRWDTGAMVKLPCYMQICYLAMFNFGNDLAYYDLKIHGLN 63
DDMYDTYG+LDE++LFT+AV+RWD LP YM++CY ++ +++A+ K G
Sbjct: 566 DDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRE 625
Query: 64 LLSNIKNEVANNVLGYFE 81
L+S + + +LGY+E
Sbjct: 626 LVSFFRKGWEDYLLGYYE 643
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 74.3 bits (181), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 50/66 (75%)
Query: 4 DDMYDTYGSLDEVELFTDAVKRWDTGAMVKLPCYMQICYLAMFNFGNDLAYYDLKIHGLN 63
DD+YD YG+L+E+E FTD ++RWD ++ +LP YMQ+C+LA+ NF +D +Y +K G+N
Sbjct: 296 DDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVN 355
Query: 64 LLSNIK 69
++ ++
Sbjct: 356 VIPYLR 361
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 66.2 bits (160), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 47/67 (70%)
Query: 4 DDMYDTYGSLDEVELFTDAVKRWDTGAMVKLPCYMQICYLAMFNFGNDLAYYDLKIHGLN 63
DD+YD +GSLD+++LFT++VKRWD + ++P M+IC++ +N ND+A + G +
Sbjct: 538 DDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRD 597
Query: 64 LLSNIKN 70
+L I+N
Sbjct: 598 VLGYIQN 604
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 55.8 bits (133), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 4 DDMYDTYGSLDEVELFTDAVKRWDTGAMVKLPCYMQICYLAMFNFGNDLAYYDLKIHGLN 63
DDM D + +LDE++ FT+ VKRWDT + ++P MQ C+ F ++ +K+ G +
Sbjct: 507 DDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRD 566
Query: 64 LLSNIK 69
+L++I+
Sbjct: 567 MLAHIR 572
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 4 DDMYDTYGSLDEVELFTDAVKRWDTGAMVKLPCYMQICYLAMFNFGND 51
DD +D YG++ E+E +TDA++RWD + +LP YM+I Y A+ + D
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKD 348
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 54.3 bits (129), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 4 DDMYDTYGSLDEVELFTDAVKRWDTGAMVKLPCYMQICYLAMFNFGND 51
DD +D YG++ E+E +TDA++RWD + +LP YM+I Y A+ + D
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKD 348
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 4 DDMYDTYGSLDEVELFTDAVKRWDTGAMVKLPCYMQICYLAMFNFGND 51
DD +D YG++ E+E +TDA++RWD + +LP YM+I Y A+ + D
Sbjct: 303 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKD 350
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 4 DDMYDTYGSLDEVELFTDAVKRWDTGAMVKLPCYMQICYLAMFNFGND 51
DD +D YG++ E+E +TDA++RWD + +LP YM+I Y A+ + D
Sbjct: 303 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKD 350
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 4 DDMYDTYGSLDEVELFTDAVKRWDTGAMVKLPCYMQICYLAMFNFGND 51
DD +D YG++ E+E +TDA++RWD + +LP YM+I Y A+ + D
Sbjct: 288 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKD 335
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 4 DDMYDTYGSLDEVELFTDAVKRWDTGAMVKLPCYMQICYLAMFNFGND 51
DD +D YG++ E+E +TDA++RWD + +LP YM+I Y A+ + D
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKD 348
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 4 DDMYDTYGSLDEVELFTDAVKRWDTGAMVKLPCYMQICYLAMFNFGND 51
DD +D YG++ E+E +TDA++RWD + +LP YM+I Y A+ + D
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKD 348
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 4 DDMYDTYGSLDEVELFTDAVKRWDTGAMVKLPCYMQICYLAMFNFGND 51
DD +D YG++ E+E +TDA++RWD + +LP YM+I Y A+ + D
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKD 348
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 4 DDMYDTYGSLDEVELFTDAVKRWDTGAMVKLPCYMQICYLAMFNFGND 51
DD +D YG++ E+E +TDA++RWD + +LP YM+I Y A+ + D
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKD 348
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 42.7 bits (99), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 4 DDMYDTYGSLDEVELFTDAVKRWDTGAMVKLPCYMQICYLAMFN 47
DD YD+Y + +E+ +T+A++RWD + ++P YM+ Y A+ +
Sbjct: 307 DDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLD 350
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.143 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,606,863
Number of Sequences: 62578
Number of extensions: 88394
Number of successful extensions: 191
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 17
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)