Query 044501
Match_columns 807
No_of_seqs 256 out of 987
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:50:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5594 Uncharacterized integr 100.0 2E-110 4E-115 939.7 40.2 650 31-775 21-719 (827)
2 KOG1134 Uncharacterized conser 100.0 6E-101 1E-105 895.9 49.3 628 65-803 60-706 (728)
3 PF02714 DUF221: Domain of unk 100.0 1E-58 2.3E-63 507.8 33.4 324 335-740 1-325 (325)
4 PF13967 RSN1_TM: Late exocyto 100.0 1.7E-28 3.6E-33 239.4 11.6 136 33-170 1-157 (157)
5 PF04547 Anoctamin: Calcium-ac 98.6 8.8E-06 1.9E-10 93.5 24.2 216 474-740 179-397 (452)
6 PF14703 DUF4463: Domain of un 98.5 9.5E-08 2.1E-12 83.2 4.8 80 230-310 1-84 (85)
7 KOG2513 Protein required for m 96.8 0.45 9.8E-06 54.7 25.2 104 394-515 261-369 (647)
8 TIGR01659 sex-lethal sex-letha 96.5 0.004 8.8E-08 68.6 6.1 42 190-235 103-144 (346)
9 KOG0144 RNA-binding protein CU 96.4 0.011 2.5E-07 64.1 8.2 146 192-356 32-189 (510)
10 PLN03134 glycine-rich RNA-bind 95.5 0.1 2.2E-06 50.1 10.0 37 191-231 31-67 (144)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 95.0 0.17 3.7E-06 56.0 11.5 36 194-233 3-38 (352)
12 TIGR01628 PABP-1234 polyadenyl 95.0 0.11 2.4E-06 61.5 10.3 36 196-235 2-37 (562)
13 TIGR01648 hnRNP-R-Q heterogene 94.8 0.54 1.2E-05 55.2 15.0 40 192-235 56-95 (578)
14 KOG0122 Translation initiation 94.6 0.15 3.2E-06 51.8 8.3 36 194-233 189-224 (270)
15 TIGR01645 half-pint poly-U bin 93.6 0.17 3.6E-06 59.5 7.5 38 193-234 106-143 (612)
16 KOG0117 Heterogeneous nuclear 93.5 0.51 1.1E-05 52.0 10.4 38 192-233 81-118 (506)
17 TIGR01648 hnRNP-R-Q heterogene 93.5 0.16 3.5E-06 59.5 7.1 36 192-230 136-171 (578)
18 TIGR01661 ELAV_HUD_SF ELAV/HuD 92.9 0.43 9.2E-06 52.9 9.3 35 194-232 269-303 (352)
19 TIGR01628 PABP-1234 polyadenyl 90.5 2 4.4E-05 50.9 12.0 38 193-234 177-214 (562)
20 TIGR01622 SF-CC1 splicing fact 89.9 0.42 9E-06 55.1 5.4 38 193-234 88-125 (457)
21 TIGR01642 U2AF_lg U2 snRNP aux 89.4 1.3 2.9E-05 51.7 9.2 38 193-234 294-331 (509)
22 KOG0145 RNA-binding protein EL 87.9 4.8 0.0001 41.5 10.4 38 194-235 41-78 (360)
23 PF13893 RRM_5: RNA recognitio 86.8 1.1 2.3E-05 35.2 4.2 24 332-355 21-44 (56)
24 PLN03121 nucleic acid binding 85.0 1.3 2.9E-05 45.6 4.9 36 194-233 5-40 (243)
25 PF04059 RRM_2: RNA recognitio 84.3 1.6 3.4E-05 38.8 4.5 39 195-235 2-40 (97)
26 PF00076 RRM_1: RNA recognitio 82.5 2 4.3E-05 34.7 4.2 33 197-233 1-33 (70)
27 PLN03120 nucleic acid binding 82.1 2 4.3E-05 45.0 4.8 36 194-233 4-39 (260)
28 KOG2514 Uncharacterized conser 77.7 18 0.00039 43.6 11.3 38 475-512 450-487 (861)
29 smart00362 RRM_2 RNA recogniti 76.7 4.2 9.1E-05 32.3 4.4 34 196-233 1-34 (72)
30 PF14259 RRM_6: RNA recognitio 76.7 3.9 8.4E-05 33.3 4.2 31 197-231 1-31 (70)
31 KOG4211 Splicing factor hnRNP- 75.6 11 0.00025 42.4 8.4 37 193-234 9-45 (510)
32 KOG0109 RNA-binding protein LA 74.9 2.5 5.5E-05 44.3 3.0 35 197-235 5-39 (346)
33 KOG0148 Apoptosis-promoting RN 74.6 6.8 0.00015 40.8 6.0 36 194-233 6-41 (321)
34 smart00361 RRM_1 RNA recogniti 73.5 3.8 8.3E-05 33.8 3.3 25 331-355 36-60 (70)
35 TIGR01659 sex-lethal sex-letha 72.9 8.5 0.00018 42.6 6.8 60 331-404 148-213 (346)
36 PF00076 RRM_1: RNA recognitio 70.4 4.4 9.6E-05 32.6 3.0 27 329-355 36-62 (70)
37 cd00590 RRM RRM (RNA recogniti 69.3 8.1 0.00018 30.7 4.4 34 196-233 1-34 (74)
38 KOG0125 Ataxin 2-binding prote 68.8 12 0.00026 40.1 6.3 42 190-235 92-133 (376)
39 KOG4206 Spliceosomal protein s 68.8 10 0.00022 38.6 5.6 48 329-390 49-96 (221)
40 PF14259 RRM_6: RNA recognitio 67.4 4.8 0.0001 32.8 2.6 24 330-353 37-60 (70)
41 KOG0132 RNA polymerase II C-te 67.2 3.7 8E-05 48.5 2.5 44 188-235 415-458 (894)
42 KOG0107 Alternative splicing f 64.4 6.1 0.00013 38.6 3.0 27 330-356 45-71 (195)
43 KOG2675 Adenylate cyclase-asso 62.7 7.7 0.00017 43.1 3.7 15 3-17 233-247 (480)
44 smart00360 RRM RNA recognition 60.7 10 0.00022 29.8 3.4 24 330-353 36-59 (71)
45 PF07292 NID: Nmi/IFP 35 domai 60.0 4.3 9.4E-05 35.3 1.0 26 190-217 48-73 (88)
46 smart00362 RRM_2 RNA recogniti 59.5 11 0.00024 29.7 3.4 25 330-354 37-61 (72)
47 KOG0127 Nucleolar protein fibr 57.8 49 0.0011 38.0 8.9 37 195-235 6-42 (678)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 56.1 14 0.00031 42.9 4.8 36 194-233 2-37 (481)
49 KOG0149 Predicted RNA-binding 55.1 8.2 0.00018 39.5 2.2 21 332-352 54-74 (247)
50 KOG4208 Nucleolar RNA-binding 55.0 13 0.00028 37.3 3.5 25 331-355 91-115 (214)
51 cd00590 RRM RRM (RNA recogniti 53.6 15 0.00033 29.1 3.3 26 330-355 38-63 (74)
52 KOG0121 Nuclear cap-binding pr 49.9 13 0.00028 34.5 2.4 53 303-355 49-101 (153)
53 KOG0117 Heterogeneous nuclear 49.2 48 0.001 37.2 7.0 28 329-356 122-149 (506)
54 TIGR01622 SF-CC1 splicing fact 47.8 41 0.00089 38.6 6.9 38 193-234 185-222 (457)
55 KOG0146 RNA-binding protein ET 47.1 36 0.00078 35.4 5.3 56 329-407 57-112 (371)
56 KOG0149 Predicted RNA-binding 44.0 29 0.00064 35.6 4.1 35 196-234 14-48 (247)
57 PF01102 Glycophorin_A: Glycop 43.9 22 0.00049 32.9 3.1 30 31-60 65-94 (122)
58 PLN03120 nucleic acid binding 43.8 38 0.00082 35.7 5.0 20 331-350 42-61 (260)
59 PF04806 EspF: EspF protein re 43.7 8.1 0.00018 28.3 0.1 19 8-26 15-34 (47)
60 KOG0113 U1 small nuclear ribon 43.6 34 0.00074 36.3 4.6 44 187-234 94-137 (335)
61 PF14605 Nup35_RRM_2: Nup53/35 42.4 31 0.00068 26.9 3.2 33 194-231 1-33 (53)
62 COG0724 RNA-binding proteins ( 41.7 35 0.00075 35.1 4.6 37 194-234 115-151 (306)
63 smart00360 RRM RNA recognition 41.3 32 0.00069 26.8 3.4 32 199-234 1-32 (71)
64 KOG1924 RhoA GTPase effector D 38.1 27 0.0006 41.6 3.2 14 380-393 922-935 (1102)
65 TIGR01645 half-pint poly-U bin 37.3 39 0.00085 40.2 4.5 38 193-234 203-240 (612)
66 KOG1457 RNA binding protein (c 37.1 52 0.0011 33.5 4.6 26 331-356 76-101 (284)
67 PF09874 DUF2101: Predicted me 36.0 1.9E+02 0.0042 29.1 8.3 97 669-778 47-147 (206)
68 KOG0114 Predicted RNA-binding 35.2 34 0.00073 30.7 2.6 24 331-354 56-79 (124)
69 PF04059 RRM_2: RNA recognitio 34.8 55 0.0012 29.1 4.0 28 330-357 43-70 (97)
70 KOG0125 Ataxin 2-binding prote 33.9 43 0.00093 36.1 3.6 25 331-355 135-159 (376)
71 TIGR01649 hnRNP-L_PTB hnRNP-L/ 32.6 67 0.0014 37.3 5.4 39 192-234 273-312 (481)
72 KOG4212 RNA-binding protein hn 32.6 41 0.00089 37.5 3.3 28 328-355 82-109 (608)
73 KOG0110 RNA-binding protein (R 30.0 69 0.0015 38.0 4.7 27 328-354 556-582 (725)
74 PF11057 Cortexin: Cortexin of 29.8 1E+02 0.0023 25.7 4.4 57 4-65 6-62 (81)
75 KOG4212 RNA-binding protein hn 28.5 1.2E+02 0.0026 34.0 5.9 42 191-235 41-82 (608)
76 TIGR01642 U2AF_lg U2 snRNP aux 27.9 68 0.0015 37.3 4.5 41 191-233 172-222 (509)
77 PF01708 Gemini_mov: Geminivir 27.3 1.1E+02 0.0025 26.6 4.4 17 31-47 38-54 (91)
78 PF11823 DUF3343: Protein of u 27.1 98 0.0021 25.7 4.1 23 333-355 2-24 (73)
79 KOG0107 Alternative splicing f 25.6 1.1E+02 0.0025 30.1 4.6 39 194-236 10-48 (195)
80 KOG0131 Splicing factor 3b, su 25.3 60 0.0013 32.2 2.7 38 193-234 8-45 (203)
81 PF11608 Limkain-b1: Limkain b 25.3 1.3E+02 0.0028 26.1 4.4 42 332-387 39-80 (90)
82 PLN03121 nucleic acid binding 25.3 1E+02 0.0022 32.1 4.5 19 332-350 44-62 (243)
83 PF01690 PLRV_ORF5: Potato lea 25.1 49 0.0011 37.5 2.4 8 134-141 145-152 (465)
84 KOG0127 Nucleolar protein fibr 25.1 84 0.0018 36.3 4.2 35 195-233 293-327 (678)
85 KOG4660 Protein Mei2, essentia 25.0 1.1E+02 0.0023 35.4 5.1 37 188-228 69-105 (549)
86 PHA03164 hypothetical protein; 24.2 1.1E+02 0.0023 25.7 3.5 27 30-56 58-84 (88)
87 KOG0130 RNA-binding protein RB 24.1 1.7E+02 0.0038 27.5 5.3 41 189-233 67-107 (170)
88 KOG1924 RhoA GTPase effector D 22.7 64 0.0014 38.8 2.8 6 68-73 628-633 (1102)
89 KOG1855 Predicted RNA-binding 22.4 79 0.0017 35.3 3.3 40 190-233 227-266 (484)
90 PF07810 TMC: TMC domain; Int 22.4 77 0.0017 29.0 2.7 53 652-707 49-104 (111)
91 PF14362 DUF4407: Domain of un 21.8 2.1E+02 0.0045 30.9 6.5 59 679-741 46-107 (301)
92 KOG0105 Alternative splicing f 21.7 1E+02 0.0022 30.6 3.5 33 193-229 5-37 (241)
93 PHA03283 envelope glycoprotein 21.7 1.4E+02 0.003 34.5 5.1 39 45-83 415-453 (542)
94 KOG0113 U1 small nuclear ribon 20.9 1.3E+02 0.0028 32.2 4.3 27 329-355 140-166 (335)
95 KOG3142 Prenylated rab accepto 20.5 3.9E+02 0.0084 26.9 7.4 44 656-699 65-109 (187)
96 PF01102 Glycophorin_A: Glycop 20.3 1E+02 0.0022 28.7 3.0 30 669-698 66-95 (122)
No 1
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=100.00 E-value=1.8e-110 Score=939.74 Aligned_cols=650 Identities=23% Similarity=0.338 Sum_probs=557.5
Q ss_pred chHHHHHHHHHHHHHHHHHhhheeecCCCCCCCC----------------CchhhhhhHHhhcCChhHHHHHhCCcHHHH
Q 044501 31 NIQYLLNISVIGLCFCVFIFLFVKLRSDHRRIPG----------------PAALLTKLLAVWHATCREIARHCGADAAQF 94 (807)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~~~f~~lR~~~~~~~~----------------p~~~~~Wi~~~~~~~d~~i~~~~GlDa~~f 94 (807)
..++++++.+++.++++++++|++||+|.||+|+ |+|+|+|+.++++++|+.+++++|+|||+|
T Consensus 21 ~~~~~t~l~f~~~~~~~~l~~f~iLR~r~k~lY~pr~~~~~~~~~~P~~~~ss~~gWl~~L~~i~d~~~l~~aGlD~y~f 100 (827)
T COG5594 21 TSAVITQLVFAGLIFLVFLILFLILRKRWKRLYAPRTNFDGQNECLPEPNPSSYWGWLEPLVKIPDEFLLQYAGLDGYFF 100 (827)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcceeecCCCcccCCCCccchHHHHHHHHhCCHHHHHHHcCcchhhH
Confidence 5678899999999999999999999998877665 478999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhheeeeec-----CCCCCCCCccccccccccccCCcchhHHHHHHHHHHHHHHHHHHhhh
Q 044501 95 LLIEGGSFVVLLSVAVASILVLLPLNLY-----GGHAVLNDQFSKTTINHIEKGSGLLWIHFLFVVLVVFLVHIGMHGVE 169 (807)
Q Consensus 95 Lrflr~~~~if~~~~~~~~~iLlPvn~t-----~~~~~~~~~~~~lTisNv~~~~~~lw~h~i~~~i~~~~~~~~l~~~~ 169 (807)
|||+|||+++|+++|+++++||+|||++ .|+.+..++++++|++|++ +++++|+|++.+|++.++++|.+ ++
T Consensus 101 Lrflkm~~~~~~i~sl~~ipIL~Pvn~~~~~~~~gn~~s~s~l~~Ls~~Nv~-~~n~~~aHvf~~~~f~~~vlfii--~~ 177 (827)
T COG5594 101 LRFLKMLIKLLFILSLILIPILLPVNYHFQKATNGNSDSESGLDKLSISNVS-PSNRLYAHVFLSWFFFGYVLFII--FR 177 (827)
T ss_pred HHHHHHHHHHHHHHHHHHhHEeeeeeecccccccCCccchhhhhHhhhhccc-CCCceeeeeehhHHHHHHHHHHH--HH
Confidence 9999999999999999999999999955 4443457799999999997 48999999999999999999998 89
Q ss_pred HHHHhHHhhcccCCCCCCCCCcc-------cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcchHHHHHH
Q 044501 170 ERLKVTRFRDGNGNLSDPNANST-------AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLCALDDLAT 242 (807)
Q Consensus 170 e~~~~~~~R~~~~~~s~~~~~~~-------~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~~L~~L~~ 242 (807)
|+++|..+||++++ ++.++++. ++|||+++++|.++++| ++|.++|+++.-|.+.+..+|||.+.++++.+
T Consensus 178 el~~y~~lr~a~~~-~p~y~qs~~~~~~~~ssRTvlis~LP~~~~~~-e~L~~~~~kl~~~~i~~~~l~~~~~~l~~l~k 255 (827)
T COG5594 178 ELRFYVVLRQAYLR-SPLYQQSLLTLQNNLSSRTVLISGLPSELRSD-EELKELFDKLKVGEIDSDVLCRDLGTLQELYK 255 (827)
T ss_pred HHHHHHHHHHHHHc-cHHHHHHHHhhccCCCCceEEeecCChhhcCc-hhHHHHHhhcCeeeeccchhhhhhHHHHHHHH
Confidence 99999999999964 55566666 99999999999999976 46999999988888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCC----CCCC----CCC--C--------CCCcccceeeEeccccccccccccccccchH
Q 044501 243 ELIRVRDEITWLVARIDSRLLPD----DNEN----DGN--E--------NQGFFCWVVYVWRKVKFLWGKVMDRLGFTDE 304 (807)
Q Consensus 243 ~r~~~~~kLE~~~~k~~~k~~~~----~~~~----~~~--~--------~~~~~~~~~~~~~r~~~l~g~kvD~i~y~~~ 304 (807)
+|++..+++|.++.++..+..+. .++. ..+ + .|+.+.+.+++.++-++++|||||+|||++
T Consensus 256 ~R~ki~~klE~~~~~~~~~~~K~~~~~~~K~~~~L~~~~~k~~~~~~~y~~~~~Rp~~~i~k~~~~i~gKkVdaI~y~s- 334 (827)
T COG5594 256 ERDKILKKLEKALNELLNKLLKKSHLKTNKKSGKLTPSRKKEFEILPEYVPDKKRPKHRIKKLNKGIFGKKVDAIDYYS- 334 (827)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCcccccchhhhhhccccccchhhhhhhhhhhccceecHHHHHH-
Confidence 99999999999887664221111 0000 000 0 011222222222233367899999999996
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCC
Q 044501 305 VRLRNLQELRAELETELAAYKEGRAPGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLA 384 (807)
Q Consensus 305 eki~~l~~l~~ei~~~~~~~~~~~~~~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P 384 (807)
+++ .++.+++++.|+...+ ..++++|||||+|+..||.|+|...++++. ...+++.||+|
T Consensus 335 ~~l---~~l~~~i~~~r~~~~~--~t~~~~~FItFkSq~~Aq~~aQ~~~~sr~~---------------~~~~v~iapaP 394 (827)
T COG5594 335 AKL---TKLDAEIENARKSLYE--NTPTKSGFITFKSQASAQIAAQSQIYSRVL---------------GKLKVEIAPAP 394 (827)
T ss_pred HHH---HHHHHHHHHHHhCccc--cCccccEEEEEehhHHHHHHHHhhhhhhhh---------------cceeeeecCCc
Confidence 555 4455677776665433 345779999999999999999998877432 12369999999
Q ss_pred CCeeeCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHhh-hcchhhHHHHHhhh
Q 044501 385 TDIYWNHLGLTKLSLRLRRVLVNTCLLLMLLFFSSPLAVINAVSSAGRIINAEAMDNAQSWLAWV-QSSSWLASLIFQFL 463 (807)
Q Consensus 385 ~DIiW~NL~~~~~~r~~R~~~~~~~~~~liif~~iPv~~v~~ls~~~~~~~~~~l~~~~~~l~~i-~~~~~~~~ii~~~l 463 (807)
+||+|+|+..++++|..|++.+++++++++++|++|||+|+.++|+ +++.+.+||++.+ .+++++.++++|+|
T Consensus 395 nDi~W~Nl~ls~~~r~~k~~~~ni~~il~II~w~~pVa~v~~i~Nl------~~l~~~~p~l~~il~~~~~l~~iltglL 468 (827)
T COG5594 395 NDIIWDNLRLSRKERLFKRISANILFILLIILWAFPVAFVGTISNL------NTLSSLWPFLKFILKDPPFLAGILTGLL 468 (827)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------hhHhhhhHHHHHHHhccHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999987 5689999999976 46999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcccCCcchhhHH
Q 044501 464 PNVIVFVSMYIVIPSVLSYLSKFERYLTMSGEQRAALLKMVCFFLVNLILLRGLVESSLESAILRMGRCYLDGEDCKKIE 543 (807)
Q Consensus 464 P~l~L~~l~~~llP~ii~~ls~~eg~~t~S~~~~~~~~k~f~f~~vnvflv~~l~~s~~~~~i~~i~~~~~~~~~~~~i~ 543 (807)
|++++.++|+ ++|.++|+++.+||..|+|+.|+.++.|||+|+++|+|+|.+++++. ++.++++ .+ +|.++.
T Consensus 469 ptv~~~~l~~-ivP~fir~Ls~~qG~~S~se~E~~~~~k~~~f~fv~~FlV~Tl~s~f-ss~v~~~----~k--e~~s~~ 540 (827)
T COG5594 469 PTVALSLLMS-IVPYFIRWLSYMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLASSF-SSIVWSL----LK--EPTSIM 540 (827)
T ss_pred hHHHHHHHHH-HhHHHHHHHHHhcCccchHHHHHHHHhhhhhheeeeehheeeehhHH-HHHHHHH----hc--ChHhHH
Confidence 9999998776 99999999999999999999999999999999999999999998864 4445443 44 789999
Q ss_pred HhhhhccccccchhHHHHHHHHHhhhhHHHhhcChhhHHHHHH-HhhhhccccccccccccccccccCcccccccccccc
Q 044501 544 QYMSASFLSKSCLSTLAFLITSTFLGISFDLLAPIPWIKKKIQ-KFRKNDMLQLVPEQSEEYPLENQNTDSLQQPLISQS 622 (807)
Q Consensus 544 ~~l~~~~lp~~~~ff~~yii~~~~~~~~~~Llr~~pli~~~i~-~~~~~~~~~l~~~~~~~Y~~~~~~~~~~~r~~~~~~ 622 (807)
.+| |.++|++|+||++|+++||+.+.+++|+|+++|++.++. ++
T Consensus 541 ~ll-A~~lpk~SnFfi~~iilqgl~~~~~~LLqi~~Ll~~~vl~kf---------------------------------- 585 (827)
T COG5594 541 TLL-ANNLPKASNFFISYIILQGLSGFPGTLLQIVPLLLSLVLGKF---------------------------------- 585 (827)
T ss_pred HHH-HhccHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhh----------------------------------
Confidence 998 899999999999999999999999999999999987664 22
Q ss_pred ccCCcchhHHhhhcccccccCCCCCCCCCCCCcchhhhhHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHhhhceeEE
Q 044501 623 MFDSPTMNAIEHQGQALSEYPISRPSPIPKQTFDFAQYYAFDLTIFALTLIYSSFAPLVVPVGAVYFGYRYVVDKYNFLF 702 (807)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~f~~g~~ya~~l~v~~I~l~Ys~i~PlIl~f~~~yF~~~y~v~Ky~lly 702 (807)
++++.+++|+| . ..++.|++|..||+.+++++|++|||+|||+|+.||++||++.|++|||+++|
T Consensus 586 -~~~TpR~k~nr----~----------~~~~~f~~G~v~P~~~~l~~I~icYSiisPlILlf~~v~F~~~ylaykY~l~Y 650 (827)
T COG5594 586 -KDSTPRQKWNR----L----------ETPPSFQFGTVLPQPILLFTITICYSIISPLILLFGAVYFILNYLAYKYNLIY 650 (827)
T ss_pred -cCCChHHHHhh----c----------cCCCccccccccchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11222333543 1 12579999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHhc-CccCccchhH
Q 044501 703 VYRVRGFPAGNDGRLMDTVLGIMRFCVDLFLLSMLLFFSVQGDSTKLQAIFTLGLLVLYKLLP-SDHDSFHPTL 775 (807)
Q Consensus 703 vy~~~~e~~~s~G~~~~~~~~~~~~~l~l~q~~~~~~f~~~~~~~~~~~~~~i~l~~~t~~~~-~~~~~~~~~~ 775 (807)
|++.+. |+||+.||++++|+++|++++|+||+|+|++.++| +.+.+++|++++|.++| +++..|+|+.
T Consensus 651 v~~~~~---es~G~~w~~al~qiivGl~l~qv~l~glf~~~k~~--~ls~~~~p~~~~Tvi~~~~~~~~f~pl~ 719 (827)
T COG5594 651 VSNHSP---ESGGGYWPRALFQIIVGLYLFQVCLLGLFSLAKGW--GLSVLLFPLIVFTVIFHYYFKKMFDPLS 719 (827)
T ss_pred ccCCCc---ccCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCcc--eeEeehHHHHHHHHHHHHHHHHhhcccc
Confidence 999864 57999999999999999999999999999999988 88999999999999999 9999999775
No 2
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=6.1e-101 Score=895.88 Aligned_cols=628 Identities=27% Similarity=0.412 Sum_probs=530.6
Q ss_pred Cchh-hhhhHHhhcCChhHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCCCCCC--ccccccccccc
Q 044501 65 PAAL-LTKLLAVWHATCREIARHCGADAAQFLLIEGGSFVVLLSVAVASILVLLPLNLYGGHAVLND--QFSKTTINHIE 141 (807)
Q Consensus 65 p~~~-~~Wi~~~~~~~d~~i~~~~GlDa~~fLrflr~~~~if~~~~~~~~~iLlPvn~t~~~~~~~~--~~~~lTisNv~ 141 (807)
|++. ++|+.++++++|++++++||+||++||||+++++++|+++++++++||+|||+++++....+ .++++|++|++
T Consensus 60 ~~~~~~~Wl~~~~k~~~~ei~~~~GlDa~~~L~~~~~~~~lf~~~~~l~~~illPVn~~~~~~~~~~~~s~~~ls~snv~ 139 (728)
T KOG1134|consen 60 PSSVNFGWLPALLKIPDEEILEHAGLDAYVFLRFLKLGIKLFAVLSLLSVPILLPVNWTNGNLELGNEDSLDKLSISNVQ 139 (728)
T ss_pred CCcccccchHHHhcCCHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhheEEeeEEEecCcccccccchhhhhhheecc
Confidence 5666 99999999999999999999999999999999999999999999999999999998874444 59999999999
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHhhhHHHHhHHhhcccCCCCCCCCCcccceeEEEecCCCC-CCCCHHHHHHHHhhh
Q 044501 142 KGSGLLWIHFLFVVLVVFLVHIGMHGVEERLKVTRFRDGNGNLSDPNANSTAIFTIMVQGLPKS-LGVDKTIVEEYFQYK 220 (807)
Q Consensus 142 ~~~~~lw~h~i~~~i~~~~~~~~l~~~~e~~~~~~~R~~~~~~s~~~~~~~~~rTVlV~~IP~~-~~~d~~~L~~~F~~~ 220 (807)
.+++++|+|++++|+++++++|++ ++|++++..+|++++..... ...+.|++++++|.. ..+.....+++|+..
T Consensus 140 ~~s~~lw~Hv~~~y~~~~~~~~~l--~~e~~~~~~~R~~~l~~~~~---~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~ 214 (728)
T KOG1134|consen 140 PGSSLLWAHVFFTYLFTFFTLFIL--YREYKHVASIRQAYLASPKY---RPDQSSVLVRNVPPPDGVSVSVIVRHFFSLN 214 (728)
T ss_pred CCCCCEEEEeehhHHHHHHHHHHH--HHHHHHHHHHHHHHHhCcCc---CccccchhhhcccCCCCCchhhHHhhhhhcc
Confidence 999999999999999999999999 88999999999999753322 233666899999932 222345667777777
Q ss_pred CCCcEEEEEeecCcchHHHHHHHHHHHH-HHHHHHHHHhhhCCCCCCCCCCCCCCCCcccceeeEecccccccccccccc
Q 044501 221 YPGKVYKVIMPMDLCALDDLATELIRVR-DEITWLVARIDSRLLPDDNENDGNENQGFFCWVVYVWRKVKFLWGKVMDRL 299 (807)
Q Consensus 221 ~pg~V~~V~v~~d~~~L~~L~~~r~~~~-~kLE~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~g~kvD~i 299 (807)
+|+++.++.+++|..+|.++.++++|+. +++-+...+. ..+ .+ ++|+. +.++.+++|+|||+|
T Consensus 215 ~~~~~~~~~~~~~~~~l~~l~~~~~k~~~~~l~~~~~~~----~~~---~~--~rP~~-------k~~~~~l~gkkvdai 278 (728)
T KOG1134|consen 215 HPVKVRSHQVVYNESKLSKLLSKLKKLRENKLYKEHKRL----KSN---PK--KRPKR-------KLGFCGLFGKKVDAI 278 (728)
T ss_pred CCceeehhHHHhhHHHHHHHHHHHHHHhHHHHHHhhhhh----ccc---cc--cCCcc-------eeeeeeeecceecHH
Confidence 8889999999999999999999999984 3322211111 000 00 11221 222336789999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEe
Q 044501 300 GFTDEVRLRNLQELRAELETELAAYKEGRAPGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVE 379 (807)
Q Consensus 300 ~y~~~eki~~l~~l~~ei~~~~~~~~~~~~~~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~ 379 (807)
|||. +|+ ++++++++++++++.++ ++.+.|||||+|+.+|+.|+|+.++. +++.|.++
T Consensus 279 ~yy~-~kl---~~l~~~i~~~~~~~~~~--~~~~~aFVtf~sr~~A~~~aq~~~~~----------------~~~~w~~~ 336 (728)
T KOG1134|consen 279 DYYS-EKL---QELSEDIEELRESLYEE--KPLPAAFVTFKSRYGAAVAAQTQQSL----------------NPTKWLTE 336 (728)
T ss_pred HHHH-HHH---HHHHHHHHHHHHHHHhc--CCCceEEEEEEeeHHHHHHHHhhhcC----------------CCCceEEE
Confidence 9996 544 55667777777777664 67899999999999999999986554 67899999
Q ss_pred eCCCCCCeeeCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHhhhcchhhHHHH
Q 044501 380 RAPLATDIYWNHLGLTKLSLRLRRVLVNTCLLLMLLFFSSPLAVINAVSSAGRIINAEAMDNAQSWLAWVQSSSWLASLI 459 (807)
Q Consensus 380 ~AP~P~DIiW~NL~~~~~~r~~R~~~~~~~~~~liif~~iPv~~v~~ls~~~~~~~~~~l~~~~~~l~~i~~~~~~~~ii 459 (807)
.||||+||.|+|+.++..+|+.|+++++++++++++||++|+++|++++|+ ++|++.+||++++.+.+++.++|
T Consensus 337 ~APeP~Di~W~nl~i~~~~~~~~~~~~~~~~~~li~f~~iPva~V~~l~nl------~~l~~~~Pflk~i~~~~~i~~vI 410 (728)
T KOG1134|consen 337 FAPEPRDIYWDNLAISYVERYLRRFLVNVALFLLLFFWIIPVAFVQALTNL------EGLSKVFPFLKPILEMKFISSVI 410 (728)
T ss_pred ecCCcccceecccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhhccchhhhhhhcchHHHHH
Confidence 999999999999999999999999999999999999999999999999987 56899999999998789999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcccCCcch
Q 044501 460 FQFLPNVIVFVSMYIVIPSVLSYLSKFERYLTMSGEQRAALLKMVCFFLVNLILLRGLVESSLESAILRMGRCYLDGEDC 539 (807)
Q Consensus 460 ~~~lP~l~L~~l~~~llP~ii~~ls~~eg~~t~S~~~~~~~~k~f~f~~vnvflv~~l~~s~~~~~i~~i~~~~~~~~~~ 539 (807)
+|+||++++.+++ .++|.++++++++|||.|+|+.|++.+.|||+|+++|+|+++++++|+..... .+++ +|
T Consensus 411 ~gfLP~l~l~~~~-~~lP~~l~~ls~~eG~~s~S~~e~~a~~k~~~F~~~nvFl~~~l~~sa~~~~~-----~~l~--~p 482 (728)
T KOG1134|consen 411 TGFLPTLALVIFL-ALLPPFLRYLSKLEGLISRSEEERSALNKYYIFLLVNVFLVVTLSGSALRQLL-----SILS--TP 482 (728)
T ss_pred HhhhHHHHHHHHH-HHHHHHHHHHHHhcCccchhHHHHHHHHhHHHHHHhhhHHHhhhhHHHHHHHH-----HHhc--CH
Confidence 9999999998666 59999999999999999999999999999999999999999999999777642 3344 47
Q ss_pred hhHHHhhhhccccccchhHHHHHHHHHhhhhHHHhhcChhhHHHHHHHhhhhccccccccccccccccccCccccccccc
Q 044501 540 KKIEQYMSASFLSKSCLSTLAFLITSTFLGISFDLLAPIPWIKKKIQKFRKNDMLQLVPEQSEEYPLENQNTDSLQQPLI 619 (807)
Q Consensus 540 ~~i~~~l~~~~lp~~~~ff~~yii~~~~~~~~~~Llr~~pli~~~i~~~~~~~~~~l~~~~~~~Y~~~~~~~~~~~r~~~ 619 (807)
.+++..+ |.++|++++||++|++++|+.|.++||+|+.||++..+++.+.
T Consensus 483 ~~i~~~l-a~~lP~~a~Ff~~yii~~g~~g~~~ellrl~~Li~~~i~~~~~----------------------------- 532 (728)
T KOG1134|consen 483 RLIPKLL-AAALPKQASFFITYIITSGWAGFAGELLRLVPLIIYLLKKLFL----------------------------- 532 (728)
T ss_pred hHHHHHH-hhhChhhHHHHHHHHHHhccchhhHHHhcchhHHHHHHHHHHc-----------------------------
Confidence 8899998 7889999999999999999999999999999999998875421
Q ss_pred cccccCCcchhHHhhhcccccccCCCCCCCCCCCCcchhhhhHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHhhhce
Q 044501 620 SQSMFDSPTMNAIEHQGQALSEYPISRPSPIPKQTFDFAQYYAFDLTIFALTLIYSSFAPLVVPVGAVYFGYRYVVDKYN 699 (807)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~f~~g~~ya~~l~v~~I~l~Ys~i~PlIl~f~~~yF~~~y~v~Ky~ 699 (807)
.+|+++.+++ ..+.+.|++|..||+.+++++|+++||++||+|+|||++||+++|+|||||
T Consensus 533 ------~~t~~~~~e~-------------~~p~~~~~~g~~yP~~~~~f~i~i~YsviaPlILpF~lvyF~l~y~vyr~q 593 (728)
T KOG1134|consen 533 ------KSTPRDREER-------------YEPLSSFYFGTIYPRILLIFTIGICYSVIAPLILPFGLVYFCLAYLVYRYQ 593 (728)
T ss_pred ------ccchhhhhhh-------------cCCccccchhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 1122222111 134688999999999999999999999999999999999999999999999
Q ss_pred eEEEeeccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHhc-CccCccchhHHHh
Q 044501 700 FLFVYRVRGFPAGNDGRLMDTVLGIMRFCVDLFLLSMLLFFSVQGDSTKLQAIFTLGLLVLYKLLP-SDHDSFHPTLLEG 778 (807)
Q Consensus 700 llyvy~~~~e~~~s~G~~~~~~~~~~~~~l~l~q~~~~~~f~~~~~~~~~~~~~~i~l~~~t~~~~-~~~~~~~~~~~~~ 778 (807)
++|||.++|| +||++||.+++++++|++++|++|+|+|++++++ ..+.+++|++++|+++| +|+.+|+|.+...
T Consensus 594 l~yvy~~~ye---s~g~~wp~ih~~ii~~l~l~ql~l~gl~~~k~~~--~~s~~~~~l~~lTi~~~~~c~~rf~p~f~~~ 668 (728)
T KOG1134|consen 594 LIYVYNQKYE---SGGRFWPDIHRRIIFGLILFQLILFGLFSLKKGA--VASVLLFPLIVLTILFHIYCKGRFLPLFIAY 668 (728)
T ss_pred hheeeccccc---ccccchHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccchHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 9999998876 5999999999999999999999999999999987 78899999999999999 9999999988664
Q ss_pred h----h---cccc--cC----CCcccceeccCCCcccc
Q 044501 779 I----Q---TVDS--IV----DGPIDYEVHSQPRFDWD 803 (807)
Q Consensus 779 ~----~---~~~~--~~----~~~~~~~~y~~p~l~~~ 803 (807)
. . +.|+ ++ ..+...++|.+|.++-.
T Consensus 669 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 706 (728)
T KOG1134|consen 669 PIEEAEVDDTLDEEREPNMENLYNYLKSAYVLPVFLSG 706 (728)
T ss_pred chhhhhhccCCccccCCChhhccccccccccCcccccc
Confidence 2 1 1121 11 12347788999988743
No 3
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=100.00 E-value=1e-58 Score=507.80 Aligned_cols=324 Identities=32% Similarity=0.593 Sum_probs=289.6
Q ss_pred eEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCCCCeeeCCcccCcchhHHHHHHHHHHHHHHH
Q 044501 335 AFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIYWNHLGLTKLSLRLRRVLVNTCLLLML 414 (807)
Q Consensus 335 aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~~~~~~li 414 (807)
|||||+++.+|+.|+|...++ ++++|+++.||||+||+|+||+.+..+|..|++++++++++++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~----------------~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~~~~~~l~ 64 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK----------------RPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVNILLFLLI 64 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC----------------CCCCceEeeCCCcccccccccCCChHHHHHHHHHHHHHHHHHH
Confidence 899999999999999987776 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhhhhhhhHHhh-hcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 044501 415 LFFSSPLAVINAVSSAGRIINAEAMDNAQSWLAWV-QSSSWLASLIFQFLPNVIVFVSMYIVIPSVLSYLSKFERYLTMS 493 (807)
Q Consensus 415 if~~iPv~~v~~ls~~~~~~~~~~l~~~~~~l~~i-~~~~~~~~ii~~~lP~l~L~~l~~~llP~ii~~ls~~eg~~t~S 493 (807)
++|++|++++++++|++ ++++..++++++ +.++...++++|++|++++.+++ .++|.++++++++|||.|+|
T Consensus 65 i~~~ipv~~v~~l~~l~------~l~~~~~~l~~~~~~~~~~~~~i~~~lp~l~l~~~~-~llp~ii~~ls~~e~~~s~S 137 (325)
T PF02714_consen 65 IFWTIPVAFVSALSNLD------TLKKVIPFLQWIISFSPWLLSLIQGILPSLLLSIFN-ALLPIIIRFLSKFEGHKSRS 137 (325)
T ss_pred HHHHHHHHHHHHHHccc------chhccchhhHHHhhccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCchh
Confidence 99999999999999974 477778999877 45788889999999999998666 59999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcccCCcchhhHHHhhhhccccccchhHHHHHHHHHhhhhHHH
Q 044501 494 GEQRAALLKMVCFFLVNLILLRGLVESSLESAILRMGRCYLDGEDCKKIEQYMSASFLSKSCLSTLAFLITSTFLGISFD 573 (807)
Q Consensus 494 ~~~~~~~~k~f~f~~vnvflv~~l~~s~~~~~i~~i~~~~~~~~~~~~i~~~l~~~~lp~~~~ff~~yii~~~~~~~~~~ 573 (807)
+.|+++++|+|.||++|+++++++++++++. + +++++ +|+++.+.+ |.++|++++||++|++++++++.+++
T Consensus 138 ~~~~sv~~k~f~f~~~n~~lv~~l~~~~~~~-~----~~~~~--~~~~i~~~l-~~~lp~~s~ffi~~ii~~~~~~~~~~ 209 (325)
T PF02714_consen 138 EVERSVLRKLFFFLFFNVFLVPSLAGTILSA-L----KNIIN--NPGSILQLL-GNFLPNSSNFFINYIILQAFIGSPLE 209 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-H----HHHHh--CcchHHHHH-HHHhhhhhHHHHHHHHHhcchhhHHH
Confidence 9999999999999999999999999987765 3 33455 678899888 78999999999999999999999999
Q ss_pred hhcChhhHHHHHHHhhhhccccccccccccccccccCccccccccccccccCCcchhHHhhhcccccccCCCCCCCCCCC
Q 044501 574 LLAPIPWIKKKIQKFRKNDMLQLVPEQSEEYPLENQNTDSLQQPLISQSMFDSPTMNAIEHQGQALSEYPISRPSPIPKQ 653 (807)
Q Consensus 574 Llr~~pli~~~i~~~~~~~~~~l~~~~~~~Y~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 653 (807)
|+|+.+++...+++.+. ..++|+.++. + ..++
T Consensus 210 Ll~~~~l~~~~~~~~~~-----------------------------------~~t~r~~~~~------~-------~~~~ 241 (325)
T PF02714_consen 210 LLRPPPLIIYYIRRKFF-----------------------------------SKTPRELNEL------Y-------TEPP 241 (325)
T ss_pred HHHHHHHHHHHHHHHhc-----------------------------------CCCHHHHHHh------c-------CCCC
Confidence 99999998888775311 1234433210 0 1368
Q ss_pred CcchhhhhHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHhhhceeEEEeeccCCCCCCCchhHHHHHHHHHHHHHHHH
Q 044501 654 TFDFAQYYAFDLTIFALTLIYSSFAPLVVPVGAVYFGYRYVVDKYNFLFVYRVRGFPAGNDGRLMDTVLGIMRFCVDLFL 733 (807)
Q Consensus 654 ~f~~g~~ya~~l~v~~I~l~Ys~i~PlIl~f~~~yF~~~y~v~Ky~llyvy~~~~e~~~s~G~~~~~~~~~~~~~l~l~q 733 (807)
+||||..||+.+++++|+++||+++|+|+|+|++||++.|++||||++|||++++| +||++||.+++++++|++++|
T Consensus 242 ~f~~~~~ya~~l~v~~i~l~ys~i~Plil~~~~~yf~l~y~v~ky~llyvy~~~~e---s~G~~~~~~~~~~~~~l~i~q 318 (325)
T PF02714_consen 242 PFDYGYQYAQMLLVFFIGLFYSPIAPLILPFGLVYFLLKYFVDKYNLLYVYRPKYE---SGGRLWPTAFNRLLFGLVIFQ 318 (325)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhheeeeccCCCC---CCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999886 589999999999999999999
Q ss_pred HHHHHHH
Q 044501 734 LSMLLFF 740 (807)
Q Consensus 734 ~~~~~~f 740 (807)
++|+|+|
T Consensus 319 ~~~~g~f 325 (325)
T PF02714_consen 319 FTMIGLF 325 (325)
T ss_pred HHHHHhC
Confidence 9999986
No 4
>PF13967 RSN1_TM: Late exocytosis, associated with Golgi transport
Probab=99.95 E-value=1.7e-28 Score=239.36 Aligned_cols=136 Identities=30% Similarity=0.496 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHHhhheeecCCCCCCCC-----------------CchhhhhhHHhhcCChhHHHHHhCCcHHHHH
Q 044501 33 QYLLNISVIGLCFCVFIFLFVKLRSDHRRIPG-----------------PAALLTKLLAVWHATCREIARHCGADAAQFL 95 (807)
Q Consensus 33 ~~~~~l~~~~~~~~~~~~~f~~lR~~~~~~~~-----------------p~~~~~Wi~~~~~~~d~~i~~~~GlDa~~fL 95 (807)
++++++.++++++++++++|+.+|++++++|+ ++|+|+|++++++++|+|++++||+||++|+
T Consensus 1 s~~~sl~~~~~i~~~~~~~F~~lR~~~~~iY~pR~~~~~~~~~~~~~~~~~g~f~Wi~~~~~~~d~~i~~~~GlDa~~fl 80 (157)
T PF13967_consen 1 SFLTSLAINLIIFLVLLLLFCILRKRFPRIYQPRSYLPHPEPERPPPLPSRGFFGWIKPVFKISDDEILRHCGLDAYVFL 80 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccHHhcccccccCCcccccCCCCCCCCchHHHHHHHcCCHHHHHHHcCCCHHHHH
Confidence 36789999999999999999999987643221 2789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeeeecCCCCCCC----CccccccccccccCCcchhHHHHHHHHHHHHHHHHHHhhhH
Q 044501 96 LIEGGSFVVLLSVAVASILVLLPLNLYGGHAVLN----DQFSKTTINHIEKGSGLLWIHFLFVVLVVFLVHIGMHGVEE 170 (807)
Q Consensus 96 rflr~~~~if~~~~~~~~~iLlPvn~t~~~~~~~----~~~~~lTisNv~~~~~~lw~h~i~~~i~~~~~~~~l~~~~e 170 (807)
||+|+++++|+++++++++||+|+|++|++.... ++++++|++|+++|++++|+|++++|+++++++|++ ++|
T Consensus 81 rflr~~~~~f~~~~i~~~~vLlPi~~~~~~~~~~~~~~~~l~~~tisnv~~~s~~lw~h~v~~~i~~~~~~~~l--~~E 157 (157)
T PF13967_consen 81 RFLRMLIKIFLFLSILSLPVLLPINYTGGDDDGDSDNESGLDRLTISNVPKGSSRLWAHVVFAYIFTFYVLYLL--WRE 157 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeEEeCCCCccccccccccccccHHhhcCCCCeehHHHHHHHHHHHHHHhhh--eeC
Confidence 9999999999999999999999999999876322 799999999999899999999999999999999988 544
No 5
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=98.58 E-value=8.8e-06 Score=93.55 Aligned_cols=216 Identities=16% Similarity=0.281 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcccCCcchhhHHHhhhhccccc
Q 044501 474 IVIPSVLSYLSKFERYLTMSGEQRAALLKMVCFFLVNLILLRGLVESSLESAILRMGRCYLDGEDCKKIEQYMSASFLSK 553 (807)
Q Consensus 474 ~llP~ii~~ls~~eg~~t~S~~~~~~~~k~f~f~~vnvflv~~l~~s~~~~~i~~i~~~~~~~~~~~~i~~~l~~~~lp~ 553 (807)
.+.-.+..+++++|.|.|.++.|.+...|.|.|+++|.+.-.... +++..... .+.+. .+..
T Consensus 179 ~iy~~~a~~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~Lfyi-----aF~~~~~~-----~~~~~--------~~~~ 240 (452)
T PF04547_consen 179 FIYRKLAKKLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFYI-----AFFYGVRQ-----EECQP--------CLSR 240 (452)
T ss_pred hHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhcc-----cccCC--------CHHH
Confidence 356677788889999999999999999999999999998754332 12211101 01110 1112
Q ss_pred cchhHHHHHHHHHhhhhHHHhhcChhhHHHHHHHhhhhccccccccccccccccccCccccccccccccccCCcchhHHh
Q 044501 554 SCLSTLAFLITSTFLGISFDLLAPIPWIKKKIQKFRKNDMLQLVPEQSEEYPLENQNTDSLQQPLISQSMFDSPTMNAIE 633 (807)
Q Consensus 554 ~~~ff~~yii~~~~~~~~~~Llr~~pli~~~i~~~~~~~~~~l~~~~~~~Y~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 633 (807)
-+..+..+++++-..+...|.+ .|.+....++..... ..+. . .+. + .+.. . . .......+.
T Consensus 241 L~~ql~~~~~~~qi~~~~~e~~--~P~~~~~~~~~~~~~------~~~~-~---~~~--~-~~~~-~-~--~~~~~~~~~ 301 (452)
T PF04547_consen 241 LRIQLFTIMVTKQIINNLLEVV--LPYLKKRYRRKKIRK------KQRK-K---QQD--E-RQEN-E-E--ENQFLQQWE 301 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh------hhhh-c---ccc--c-cccc-c-c--ccchHHHHH
Confidence 2233466667776777878876 688776665431000 0000 0 000 0 0000 0 0 001111121
Q ss_pred hhcccccccCCCCCCCCCCCCcc---hhhhhHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHhhhceeEEEeeccCCC
Q 044501 634 HQGQALSEYPISRPSPIPKQTFD---FAQYYAFDLTIFALTLIYSSFAPLVVPVGAVYFGYRYVVDKYNFLFVYRVRGFP 710 (807)
Q Consensus 634 ~~~~~~~~~p~~~~~~~~~~~f~---~g~~ya~~l~v~~I~l~Ys~i~PlIl~f~~~yF~~~y~v~Ky~llyvy~~~~e~ 710 (807)
++ + ..+++| .-..|..+..-+-.+..||+.-|+.-.++++.-.+-.-+|++.+++.+++..-.
T Consensus 302 ~e------~--------~l~~y~~~g~~~dY~emviQFGyv~lF~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~ 367 (452)
T PF04547_consen 302 KE------Y--------ELPPYDPDGLFDDYLEMVIQFGYVTLFSAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPR 367 (452)
T ss_pred HH------h--------cCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcc
Confidence 11 1 123343 347888888899999999999999999999999999999999999999755422
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 044501 711 AGNDGRLMDTVLGIMRFCVDLFLLSMLLFF 740 (807)
Q Consensus 711 ~~s~G~~~~~~~~~~~~~l~l~q~~~~~~f 740 (807)
..++=+.|-.++..+...-++....++++.
T Consensus 368 ~~~~IG~W~~il~~i~~lav~tN~~li~~~ 397 (452)
T PF04547_consen 368 RASSIGIWNNILEIISWLAVITNAALIAFT 397 (452)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 333445698888777654444444444443
No 6
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=98.53 E-value=9.5e-08 Score=83.17 Aligned_cols=80 Identities=13% Similarity=0.068 Sum_probs=49.5
Q ss_pred eecCcchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCC--CCc-ccceeeEecccccccc-ccccccccchHH
Q 044501 230 MPMDLCALDDLATELIRVRDEITWLVARIDSRLLPDDNENDGNEN--QGF-FCWVVYVWRKVKFLWG-KVMDRLGFTDEV 305 (807)
Q Consensus 230 v~~d~~~L~~L~~~r~~~~~kLE~~~~k~~~k~~~~~~~~~~~~~--~~~-~~~~~~~~~r~~~l~g-~kvD~i~y~~~e 305 (807)
||||+++|++|+++|+++.++||.+++++.+...........+.. +.. ....+..+.++.+++| +|||+|+||+ +
T Consensus 1 i~rd~~~L~~Lv~~R~~~~~kLE~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kVDaIdyy~-~ 79 (85)
T PF14703_consen 1 ICRDWSKLEKLVEEREKAVRKLESAESKYLKNANKRPKKRPKKKKKSESSSNKKRPRHRTGFLGLFGGKKVDAIDYYR-E 79 (85)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCccccCccccccccCCCCCCCcCCCCCCCcchHHHHHH-H
Confidence 689999999999999999999999999886443211110000000 000 0000111234456777 9999999996 5
Q ss_pred HHHHH
Q 044501 306 RLRNL 310 (807)
Q Consensus 306 ki~~l 310 (807)
++++|
T Consensus 80 el~~L 84 (85)
T PF14703_consen 80 ELKEL 84 (85)
T ss_pred HHHHh
Confidence 55443
No 7
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=0.45 Score=54.72 Aligned_cols=104 Identities=24% Similarity=0.324 Sum_probs=71.0
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhH-HhhhcchhhHHHHHhhhhHHHHHHHH
Q 044501 394 LTKLSLRLRRVLVNTCLLLMLLFFSSPLAVINAVSSAGRIINAEAMDNAQSWL-AWVQSSSWLASLIFQFLPNVIVFVSM 472 (807)
Q Consensus 394 ~~~~~r~~R~~~~~~~~~~liif~~iPv~~v~~ls~~~~~~~~~~l~~~~~~l-~~i~~~~~~~~ii~~~lP~l~L~~l~ 472 (807)
.+.|+|.+|+..+++-++++++....++.+...--. -|. .-.. .+ +.+ +-.++|+++++++.
T Consensus 261 yp~w~~~~~~~~vsvPv~l~c~~i~l~f~l~~f~ie--------------~~~~s~~~-~~-~~s-ils~lP~iv~~~li 323 (647)
T KOG2513|consen 261 YPEWKRILRRYLVSVPVILLCLCILLSFMLYCFQIE--------------VWVLSDYG-GP-LIS-ILSYLPTIVYAVLI 323 (647)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHcC-Cc-hHH-HHHHHHHHHHHHHH
Confidence 457889999999988888777766666555433211 111 1111 12 222 45678988877554
Q ss_pred HHHHHHHHH----HHHhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 044501 473 YIVIPSVLS----YLSKFERYLTMSGEQRAALLKMVCFFLVNLILLR 515 (807)
Q Consensus 473 ~~llP~ii~----~ls~~eg~~t~S~~~~~~~~k~f~f~~vnvflv~ 515 (807)
. ++-.+-+ +|.++|.|.|+|.++.+...|.+.|+|+|.++--
T Consensus 324 ~-~~t~~Y~k~Ae~Lt~~EN~r~~s~y~~hli~K~~lf~f~nsy~sL 369 (647)
T KOG2513|consen 324 P-VLTRIYKKLAEFLTKLENHRLESAYQKHLIAKVFLFNFVNSYLSL 369 (647)
T ss_pred H-HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 4444444 4668999999999999999999999999998743
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=96.50 E-value=0.004 Score=68.60 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=35.0
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcc
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLC 235 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~ 235 (807)
.....+||.|.|||.++. +++|+++|++. |.|++|.+++|..
T Consensus 103 ~~~~~~~LfVgnLp~~~t--e~~L~~lF~~~--G~V~~v~i~~d~~ 144 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMT--DRELYALFRTI--GPINTCRIMRDYK 144 (346)
T ss_pred CCCCCcEEEEeCCCCCCC--HHHHHHHHHhc--CCEEEEEEEecCC
Confidence 344689999999999985 68999999986 5699999998853
No 9
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=96.35 E-value=0.011 Score=64.06 Aligned_cols=146 Identities=16% Similarity=0.203 Sum_probs=75.3
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcchHHHH------HHHHHHHHHHHHHHHHHhhhCCCCC
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLCALDDL------ATELIRVRDEITWLVARIDSRLLPD 265 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~~L~~L------~~~r~~~~~kLE~~~~k~~~k~~~~ 265 (807)
.+.--+.|-.||+... |++|+++||++ |.|.+|.+.+|-..=... ...|+++.+ .-.++. +.|.++.
T Consensus 32 ~~~vKlfVgqIprt~s--E~dlr~lFe~y--g~V~einl~kDk~t~~s~gcCFv~~~trk~a~~-a~~Alh--n~ktlpG 104 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTAS--EKDLRELFEKY--GNVYEINLIKDKSTGQSKGCCFVKYYTRKEADE-AINALH--NQKTLPG 104 (510)
T ss_pred chhhhheeccCCcccc--HHHHHHHHHHh--CceeEEEeecccccCcccceEEEEeccHHHHHH-HHHHhh--cccccCC
Confidence 4455678899999884 78999999996 689999999985421110 112332211 111221 2232332
Q ss_pred CCC-----CCCCCCCCcccceeeEecc-ccccccccccccccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCeeEEEE
Q 044501 266 DNE-----NDGNENQGFFCWVVYVWRK-VKFLWGKVMDRLGFTDEVRLRNLQELRAELETELAAYKEGRAPGAGVAFVMF 339 (807)
Q Consensus 266 ~~~-----~~~~~~~~~~~~~~~~~~r-~~~l~g~kvD~i~y~~~eki~~l~~l~~ei~~~~~~~~~~~~~~~~~aFVtF 339 (807)
... --++++++.-. .++ +-++..|+. .|++++++=..-..||+ ..-.++.+....|+|||+|
T Consensus 105 ~~~pvqvk~Ad~E~er~~~-----e~KLFvg~lsK~~------te~evr~iFs~fG~Ied-~~ilrd~~~~sRGcaFV~f 172 (510)
T KOG0144|consen 105 MHHPVQVKYADGERERIVE-----ERKLFVGMLSKQC------TENEVREIFSRFGHIED-CYILRDPDGLSRGCAFVKF 172 (510)
T ss_pred CCcceeecccchhhhcccc-----chhhhhhhccccc------cHHHHHHHHHhhCccch-hhheecccccccceeEEEE
Confidence 110 01122111100 001 111222332 13434333221112221 1112333445789999999
Q ss_pred cCHHHHHHHHHHhhhhh
Q 044501 340 KDVYTANKAVQDFRNEK 356 (807)
Q Consensus 340 ~s~~~a~~a~q~~~~~~ 356 (807)
.+.+.|..|.+.++...
T Consensus 173 stke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 173 STKEMAVAAIKALNGTQ 189 (510)
T ss_pred ehHHHHHHHHHhhccce
Confidence 99999999999988764
No 10
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=95.51 E-value=0.1 Score=50.14 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=29.5
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
+..+.+|.|.|||.+.. +++|+++|+++ |.|.++.++
T Consensus 31 ~~~~~~lfVgnL~~~~t--e~~L~~~F~~~--G~I~~v~i~ 67 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTD--DASLRDAFAHF--GDVVDAKVI 67 (144)
T ss_pred cCCCCEEEEeCCCCCCC--HHHHHHHHhcC--CCeEEEEEE
Confidence 34578899999999884 78999999975 567777654
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=95.02 E-value=0.17 Score=56.01 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=29.8
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
..+|+|.|||.++. |++|+++|+++ |.|.+|.+++|
T Consensus 3 ~~~l~V~nLp~~~~--e~~l~~~F~~~--G~i~~v~i~~d 38 (352)
T TIGR01661 3 KTNLIVNYLPQTMT--QEEIRSLFTSI--GEIESCKLVRD 38 (352)
T ss_pred CcEEEEeCCCCCCC--HHHHHHHHHcc--CCEEEEEEEEc
Confidence 57999999999985 68999999985 56888876544
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=94.95 E-value=0.11 Score=61.53 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=31.8
Q ss_pred eEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcc
Q 044501 196 TIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLC 235 (807)
Q Consensus 196 TVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~ 235 (807)
||.|.|||.+.. |+.|+++|+++ |.|.+|.+++|..
T Consensus 2 sl~VgnLp~~vt--e~~L~~~F~~~--G~v~~v~v~~d~~ 37 (562)
T TIGR01628 2 SLYVGDLDPDVT--EAKLYDLFKPF--GPVLSVRVCRDSV 37 (562)
T ss_pred eEEEeCCCCCCC--HHHHHHHHHhc--CCEEEEEEEecCC
Confidence 799999999984 78999999986 5799999999864
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=94.80 E-value=0.54 Score=55.20 Aligned_cols=40 Identities=20% Similarity=0.381 Sum_probs=34.0
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcc
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLC 235 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~ 235 (807)
....+|.|.|||.++. |++|++.|+++ |.|.++.+.+|..
T Consensus 56 ~~~~~lFVgnLp~~~t--Ed~L~~~F~~~--G~I~~vrl~~D~s 95 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLY--EDELVPLFEKA--GPIYELRLMMDFS 95 (578)
T ss_pred CCCCEEEeCCCCCCCC--HHHHHHHHHhh--CCEEEEEEEECCC
Confidence 3468999999999984 78999999986 6799999998843
No 14
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=94.56 E-value=0.15 Score=51.84 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=29.1
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
..||.|+|+|++++ |..|++.|..+ |.|.+|++++|
T Consensus 189 ~~tvRvtNLsed~~--E~dL~eLf~~f--g~i~rvylard 224 (270)
T KOG0122|consen 189 EATVRVTNLSEDMR--EDDLEELFRPF--GPITRVYLARD 224 (270)
T ss_pred cceeEEecCccccC--hhHHHHHhhcc--CccceeEEEEc
Confidence 67899999999997 57899999875 45788877644
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=93.57 E-value=0.17 Score=59.53 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=32.4
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
..++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.+|-
T Consensus 106 ~~~rLfVGnLp~~~t--Ee~Lr~lF~~f--G~I~sV~I~~D~ 143 (612)
T TIGR01645 106 IMCRVYVGSISFELR--EDTIRRAFDPF--GPIKSINMSWDP 143 (612)
T ss_pred CCCEEEEcCCCCCCC--HHHHHHHHHcc--CCEEEEEEeecC
Confidence 467999999999885 68999999985 579999998874
No 16
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=93.53 E-value=0.51 Score=51.97 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=31.1
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
..-.-|.|-.||+++- |++|.-+||+. |+|-++.+-.|
T Consensus 81 ~~G~EVfvGkIPrD~~--EdeLvplfEki--G~I~elRLMmD 118 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVF--EDELVPLFEKI--GKIYELRLMMD 118 (506)
T ss_pred CCCceEEecCCCcccc--chhhHHHHHhc--cceeeEEEeec
Confidence 4567899999999996 57899999986 66777777666
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=93.46 E-value=0.16 Score=59.52 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=27.5
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEe
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIM 230 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v 230 (807)
...++|.|.|||.+.. +++|.+.|+++..+ +.++.+
T Consensus 136 ~~~~rLFVgNLP~~~T--eeeL~eeFskv~eg-vv~vIv 171 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKK--REEILEEFSKVTEG-VVDVIV 171 (578)
T ss_pred ccCceeEeecCCcchh--hHHHHHHhhcccCC-ceEEEE
Confidence 3478999999999885 57899999987654 555544
No 18
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=92.92 E-value=0.43 Score=52.87 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=28.5
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeec
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~ 232 (807)
.++|.|.|||.+. +++.|+++|+.+ |.|.+|.+++
T Consensus 269 ~~~lfV~NL~~~~--~e~~L~~~F~~f--G~v~~v~i~~ 303 (352)
T TIGR01661 269 GYCIFVYNLSPDT--DETVLWQLFGPF--GAVQNVKIIR 303 (352)
T ss_pred CcEEEEeCCCCCC--CHHHHHHHHHhC--CCeEEEEEeE
Confidence 4579999999886 478999999975 5688887664
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=90.54 E-value=2 Score=50.93 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=31.9
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
...+|.|.|+|.+.. ++.|+++|+++ |.|.++.+.+|-
T Consensus 177 ~~~~l~V~nl~~~~t--ee~L~~~F~~f--G~i~~~~i~~~~ 214 (562)
T TIGR01628 177 KFTNLYVKNLDPSVN--EDKLRELFAKF--GEITSAAVMKDG 214 (562)
T ss_pred CCCeEEEeCCCCcCC--HHHHHHHHHhc--CCEEEEEEEECC
Confidence 357899999999884 68999999986 679999888774
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=89.93 E-value=0.42 Score=55.10 Aligned_cols=38 Identities=26% Similarity=0.179 Sum_probs=32.8
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
..+||.|.|||.+.. +++|+++|++. |.|.+|.+..|.
T Consensus 88 ~~~~l~V~nlp~~~~--~~~l~~~F~~~--G~v~~v~i~~d~ 125 (457)
T TIGR01622 88 DDRTVFVLQLALKAR--ERDLYEFFSKV--GKVRDVQCIKDR 125 (457)
T ss_pred CCcEEEEeCCCCCCC--HHHHHHHHHhc--CCeeEEEEeecC
Confidence 478999999999885 68999999985 689999998873
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=89.44 E-value=1.3 Score=51.65 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=31.7
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
..++|.|.|||..+. ++.|+++|+.+ |.|..+.++.|.
T Consensus 294 ~~~~l~v~nlp~~~~--~~~l~~~f~~~--G~i~~~~~~~~~ 331 (509)
T TIGR01642 294 SKDRIYIGNLPLYLG--EDQIKELLESF--GDLKAFNLIKDI 331 (509)
T ss_pred CCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeeEEEEEecC
Confidence 468999999999885 68999999986 568888887763
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=87.91 E-value=4.8 Score=41.47 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=30.7
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcc
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLC 235 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~ 235 (807)
.--+.|.-+|..+. +++++..|.++ |+++++.++||--
T Consensus 41 kTNLIvNYLPQ~MT--qdE~rSLF~Si--GeiEScKLvRDKi 78 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMT--QDELRSLFGSI--GEIESCKLVRDKI 78 (360)
T ss_pred cceeeeeecccccC--HHHHHHHhhcc--cceeeeeeeeccc
Confidence 33466778999986 57899999885 7899999999864
No 23
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=86.83 E-value=1.1 Score=35.17 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.5
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
.+.|||+|.+..+|+.|.+.++..
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~ 44 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGR 44 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 489999999999999999988654
No 24
>PLN03121 nucleic acid binding protein; Provisional
Probab=85.03 E-value=1.3 Score=45.61 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=31.8
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
-|||.|+||+.+.. +++|++||+.. |.|.+|.+.+|
T Consensus 5 g~TV~V~NLS~~tT--E~dLrefFS~~--G~I~~V~I~~D 40 (243)
T PLN03121 5 GYTAEVTNLSPKAT--EKDVYDFFSHC--GAIEHVEIIRS 40 (243)
T ss_pred ceEEEEecCCCCCC--HHHHHHHHHhc--CCeEEEEEecC
Confidence 59999999999885 68999999974 78999998876
No 25
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=84.34 E-value=1.6 Score=38.81 Aligned_cols=39 Identities=18% Similarity=0.437 Sum_probs=32.1
Q ss_pred eeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcc
Q 044501 195 FTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLC 235 (807)
Q Consensus 195 rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~ 235 (807)
-|||++|||..+. .+.|.+.+++.++|+..=+.+.-|.+
T Consensus 2 TTvMirNIPn~~t--~~~L~~~l~~~~~g~yDF~YLPiDf~ 40 (97)
T PF04059_consen 2 TTVMIRNIPNKYT--QEMLIQILDEHFKGKYDFFYLPIDFK 40 (97)
T ss_pred eeEEEecCCCCCC--HHHHHHHHHHhccCcceEEEeeeecc
Confidence 5999999999985 57899999888888777777777753
No 26
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=82.48 E-value=2 Score=34.74 Aligned_cols=33 Identities=18% Similarity=0.397 Sum_probs=27.7
Q ss_pred EEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 197 IMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 197 VlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
|.|.|||.+.. +++|+++|+++ |.+..+.+..|
T Consensus 1 l~v~nlp~~~t--~~~l~~~f~~~--g~i~~~~~~~~ 33 (70)
T PF00076_consen 1 LYVGNLPPDVT--EEELRDFFSQF--GKIESIKVMRN 33 (70)
T ss_dssp EEEESETTTSS--HHHHHHHHHTT--STEEEEEEEEE
T ss_pred cEEcCCCCcCC--HHHHHHHHHHh--hhccccccccc
Confidence 68999999985 68999999985 57888887765
No 27
>PLN03120 nucleic acid binding protein; Provisional
Probab=82.08 E-value=2 Score=45.02 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=30.7
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
.|||.|.|||.+.. +++|+++|+.. |.|.+|.+.+|
T Consensus 4 ~rtVfVgNLs~~tT--E~dLrefFS~~--G~I~~V~I~~d 39 (260)
T PLN03120 4 VRTVKVSNVSLKAT--ERDIKEFFSFS--GDIEYVEMQSE 39 (260)
T ss_pred CCEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEeec
Confidence 58999999999874 78999999874 78999998643
No 28
>KOG2514 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.71 E-value=18 Score=43.61 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHH
Q 044501 475 VIPSVLSYLSKFERYLTMSGEQRAALLKMVCFFLVNLI 512 (807)
Q Consensus 475 llP~ii~~ls~~eg~~t~S~~~~~~~~k~f~f~~vnvf 512 (807)
+---+..+++..|.+.|.|+.|-+...|.|+||++|.-
T Consensus 450 iy~~~a~~lt~~e~prTe~~~ensl~~KiflfqfvN~y 487 (861)
T KOG2514|consen 450 IYSNLASRLTNLENPRTESEFENSLILKIFLFQFVNYY 487 (861)
T ss_pred HhhhHHHHHhhhcCccchhhhcchhHHHHHHHHHHHhc
Confidence 55566778889999999999999999999999999974
No 29
>smart00362 RRM_2 RNA recognition motif.
Probab=76.66 E-value=4.2 Score=32.28 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=27.1
Q ss_pred eEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 196 TIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 196 TVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
||.|+|+|.+.. +++|+++|++. |.|.++.+.++
T Consensus 1 ~v~i~~l~~~~~--~~~l~~~~~~~--g~v~~~~~~~~ 34 (72)
T smart00362 1 TLFVGNLPPDVT--EEDLKELFSKF--GPIESVKIPKD 34 (72)
T ss_pred CEEEcCCCCcCC--HHHHHHHHHhc--CCEEEEEEecC
Confidence 689999999885 57999999975 46777776654
No 30
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=76.66 E-value=3.9 Score=33.34 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=24.8
Q ss_pred EEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 197 IMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 197 VlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
|+|+|||.+.. +++|+++|+.. |.|.+|.+.
T Consensus 1 v~i~nlp~~~~--~~~l~~~f~~~--g~v~~v~~~ 31 (70)
T PF14259_consen 1 VYISNLPPSTT--EEDLRNFFSRF--GPVEKVRLI 31 (70)
T ss_dssp EEEESSTTT----HHHHHHHCTTS--SBEEEEEEE
T ss_pred CEEeCCCCCCC--HHHHHHHHHhc--CCcceEEEE
Confidence 68999999874 68999999985 568888876
No 31
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=75.60 E-value=11 Score=42.37 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=29.9
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
..+-|.++++|=+.. +++|.+||+. -+|+++.+.|+.
T Consensus 9 ~~~~vr~rGLPwsat--~~ei~~Ff~~---~~I~~~~~~r~~ 45 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSAT--EKEILDFFSN---CGIENLEIPRRN 45 (510)
T ss_pred cceEEEecCCCcccc--HHHHHHHHhc---CceeEEEEeccC
Confidence 478899999997764 6899999986 368888888873
No 32
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=74.93 E-value=2.5 Score=44.27 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=30.0
Q ss_pred EEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcc
Q 044501 197 IMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLC 235 (807)
Q Consensus 197 VlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~ 235 (807)
+.|-|+|++.. +++|+..||++ |+|.++-|+.|.+
T Consensus 5 LFIGNLp~~~~--~~elr~lFe~y--gkVlECDIvKNYg 39 (346)
T KOG0109|consen 5 LFIGNLPREAT--EQELRSLFEQY--GKVLECDIVKNYG 39 (346)
T ss_pred hhccCCCcccc--hHHHHHHHHhh--CceEeeeeecccc
Confidence 46789999885 58999999986 7999999998887
No 33
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=74.64 E-value=6.8 Score=40.77 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=31.0
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
.||+.|-|+.++.. |+-|...|.++ |.|.+..+++|
T Consensus 6 prtlyvgnld~~vt--e~~i~~lf~qi--g~v~~~k~i~~ 41 (321)
T KOG0148|consen 6 PRTLYVGNLDSTVT--EDFIATLFNQI--GSVTKTKVIFD 41 (321)
T ss_pred CceEEeeccChhhH--HHHHHHHHHhc--cccccceeehh
Confidence 69999999999885 67899999987 56888888877
No 34
>smart00361 RRM_1 RNA recognition motif.
Probab=73.54 E-value=3.8 Score=33.77 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=22.0
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
..|.|||+|++..+|+.|.+.+...
T Consensus 36 ~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 36 KRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4689999999999999999987664
No 35
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=72.90 E-value=8.5 Score=42.62 Aligned_cols=60 Identities=23% Similarity=0.298 Sum_probs=37.7
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCC------CCCeeeCCcccCcchhHHHHH
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPL------ATDIYWNHLGLTKLSLRLRRV 404 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~------P~DIiW~NL~~~~~~r~~R~~ 404 (807)
..++|||+|+++.+|..|++.+..... ....++|+.|-+ ...|.-.||..+..+..+|.+
T Consensus 148 srGyaFVeF~~~e~A~~Ai~~LnG~~l--------------~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~ 213 (346)
T TIGR01659 148 SFGYAFVDFGSEADSQRAIKNLNGITV--------------RNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTI 213 (346)
T ss_pred cCcEEEEEEccHHHHHHHHHHcCCCcc--------------CCceeeeecccccccccccceeEEeCCCCcccHHHHHHH
Confidence 458999999999999999987755321 233445555421 223556666655555555543
No 36
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=70.35 E-value=4.4 Score=32.60 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.3
Q ss_pred CCCCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 329 APGAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 329 ~~~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
.+..+.|||+|++..+|..|++.+...
T Consensus 36 ~~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 36 GKSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred ccccceEEEEEcCHHHHHHHHHHcCCC
Confidence 346789999999999999999987664
No 37
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=69.30 E-value=8.1 Score=30.74 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=27.3
Q ss_pred eEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 196 TIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 196 TVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
+|.|+|+|.... +++++++|+.. |.+.++.+.++
T Consensus 1 ~i~i~~l~~~~~--~~~i~~~~~~~--g~i~~~~~~~~ 34 (74)
T cd00590 1 TLFVGNLPPDVT--EEDLRELFSKF--GKVESVRIVRD 34 (74)
T ss_pred CEEEeCCCCccC--HHHHHHHHHhc--CCEEEEEEeeC
Confidence 588999999874 68999999985 67888776643
No 38
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=68.81 E-value=12 Score=40.11 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=35.1
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcc
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLC 235 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~ 235 (807)
.+-..+-+-|+|||=..| | .+|+..|+++ |+|.+|-|+.|-+
T Consensus 92 s~~~pkRLhVSNIPFrFR-d-pDL~aMF~kf--G~VldVEIIfNER 133 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFR-D-PDLRAMFEKF--GKVLDVEIIFNER 133 (376)
T ss_pred CCCCCceeEeecCCcccc-C-ccHHHHHHhh--CceeeEEEEeccC
Confidence 344578899999999999 5 5899999986 7899999998754
No 39
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=68.79 E-value=10 Score=38.60 Aligned_cols=48 Identities=25% Similarity=0.390 Sum_probs=34.9
Q ss_pred CCCCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCCCCeeeC
Q 044501 329 APGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIYWN 390 (807)
Q Consensus 329 ~~~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P~DIiW~ 390 (807)
.+-.|.|||+|++..+|..|...+..-. ++ +.-++++.|=+++||+=.
T Consensus 49 ~KmRGQA~VvFk~~~~As~A~r~l~gfp------Fy--------gK~mriqyA~s~sdii~~ 96 (221)
T KOG4206|consen 49 PKMRGQAFVVFKETEAASAALRALQGFP------FY--------GKPMRIQYAKSDSDIIAQ 96 (221)
T ss_pred CCccCceEEEecChhHHHHHHHHhcCCc------cc--------CchhheecccCccchhhc
Confidence 4668999999999999999988665421 11 233567888888887755
No 40
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=67.40 E-value=4.8 Score=32.78 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.6
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFR 353 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~ 353 (807)
.+.+.|||+|.++.+|..|++...
T Consensus 37 ~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 37 QSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ccCCEEEEEeCCHHHHHHHHHHCC
Confidence 457999999999999999999875
No 41
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=67.25 E-value=3.7 Score=48.52 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=36.3
Q ss_pred CCCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcc
Q 044501 188 NANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLC 235 (807)
Q Consensus 188 ~~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~ 235 (807)
...++.+||+.|-+||+.+. |++|++.||++ |.|.+|.+..+-+
T Consensus 415 d~isV~SrTLwvG~i~k~v~--e~dL~~~feef--GeiqSi~li~~R~ 458 (894)
T KOG0132|consen 415 DHISVCSRTLWVGGIPKNVT--EQDLANLFEEF--GEIQSIILIPPRG 458 (894)
T ss_pred cceeEeeeeeeeccccchhh--HHHHHHHHHhc--ccceeEeeccCCc
Confidence 45678999999999999986 68999999996 6788887665543
No 42
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=64.42 E-value=6.1 Score=38.58 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=23.4
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNEK 356 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~~ 356 (807)
.+-|.|||+|++..+|..|...+....
T Consensus 45 nPPGfAFVEFed~RDA~DAvr~LDG~~ 71 (195)
T KOG0107|consen 45 NPPGFAFVEFEDPRDAEDAVRYLDGKD 71 (195)
T ss_pred cCCCceEEeccCcccHHHHHhhcCCcc
Confidence 467999999999999999999887653
No 43
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=62.71 E-value=7.7 Score=43.08 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=8.1
Q ss_pred CCCCCCCCCCCCCCC
Q 044501 3 PPLPSINDPLSPPPS 17 (807)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (807)
|+.||||||+|||++
T Consensus 233 ~g~PPPPPP~PPp~~ 247 (480)
T KOG2675|consen 233 PGAPPPPPPAPPPAP 247 (480)
T ss_pred CCCCCCCCCCCCCcc
Confidence 455555555555553
No 44
>smart00360 RRM RNA recognition motif.
Probab=60.72 E-value=10 Score=29.81 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=20.9
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFR 353 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~ 353 (807)
++.+.|||+|++..+|..|.+.+.
T Consensus 36 ~~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 36 KSKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCCceEEEEeCCHHHHHHHHHHcC
Confidence 456899999999999999988765
No 45
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=60.00 E-value=4.3 Score=35.30 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=20.3
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHH
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYF 217 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F 217 (807)
..++.|||+|+|||..+ |++.|++..
T Consensus 48 ~~vs~rtVlvsgip~~l--~ee~l~D~L 73 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVL--DEEELRDKL 73 (88)
T ss_pred EcccCCEEEEeCCCCCC--ChhhheeeE
Confidence 45789999999999955 567777644
No 46
>smart00362 RRM_2 RNA recognition motif.
Probab=59.48 E-value=11 Score=29.71 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=21.2
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRN 354 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~ 354 (807)
++.+.|||+|++..+|+.|++.+..
T Consensus 37 ~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 37 KSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CCCceEEEEeCCHHHHHHHHHHhCC
Confidence 3568999999999999999887653
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=57.83 E-value=49 Score=38.01 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=30.0
Q ss_pred eeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcc
Q 044501 195 FTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLC 235 (807)
Q Consensus 195 rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~ 235 (807)
-|+.|+++|.+..+ +.|.++|+...| |..+.++-|-+
T Consensus 6 ~TlfV~~lp~~~~~--~qL~e~FS~vGP--ik~~~vVt~~g 42 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTG--EQLEEFFSYVGP--IKHAVVVTNKG 42 (678)
T ss_pred ceEEEecCCCccch--hHHHHhhhcccC--cceeEEecCCC
Confidence 79999999998873 689999998755 77777776654
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=56.13 E-value=14 Score=42.87 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=31.4
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
++||.|.|||.+.. +++|++.|+.+ |.|.+|.+..+
T Consensus 2 s~vv~V~nLp~~~t--e~~L~~~f~~f--G~V~~v~i~~~ 37 (481)
T TIGR01649 2 SPVVHVRNLPQDVV--EADLVEALIPF--GPVSYVMMLPG 37 (481)
T ss_pred ccEEEEcCCCCCCC--HHHHHHHHHhc--CCeeEEEEECC
Confidence 79999999999874 78999999986 67999988864
No 49
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=55.14 E-value=8.2 Score=39.48 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.0
Q ss_pred CCeeEEEEcCHHHHHHHHHHh
Q 044501 332 AGVAFVMFKDVYTANKAVQDF 352 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~ 352 (807)
.|++||||++.++|..|++.-
T Consensus 54 kGyGfVTf~d~~aa~rAc~dp 74 (247)
T KOG0149|consen 54 KGYGFVTFRDAEAATRACKDP 74 (247)
T ss_pred cceeeEEeecHHHHHHHhcCC
Confidence 489999999999999999854
No 50
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=55.00 E-value=13 Score=37.35 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.0
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
.-|+|||.|+|...|..|+.++..-
T Consensus 91 SKgYAFVEFEs~eVA~IaAETMNNY 115 (214)
T KOG4208|consen 91 SKGYAFVEFESEEVAKIAAETMNNY 115 (214)
T ss_pred cCceEEEEeccHHHHHHHHHHhhhh
Confidence 4589999999999999999987653
No 51
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=53.61 E-value=15 Score=29.06 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=22.1
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
.+.+.|||+|++..+|+.|.+.+...
T Consensus 38 ~~~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 38 KSKGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCC
Confidence 45789999999999999999876554
No 52
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=49.87 E-value=13 Score=34.47 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 303 DEVRLRNLQELRAELETELAAYKEGRAPGAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 303 ~~eki~~l~~l~~ei~~~~~~~~~~~~~~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
+||+|-+|=..-.+|+.-+.-....+..+.|-+||.|-+..+|..|++-+...
T Consensus 49 tEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgt 101 (153)
T KOG0121|consen 49 TEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGT 101 (153)
T ss_pred cHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccC
Confidence 45555444333333332222121123457888999999999999999977654
No 53
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=49.19 E-value=48 Score=37.17 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.8
Q ss_pred CCCCCeeEEEEcCHHHHHHHHHHhhhhh
Q 044501 329 APGAGVAFVMFKDVYTANKAVQDFRNEK 356 (807)
Q Consensus 329 ~~~~~~aFVtF~s~~~a~~a~q~~~~~~ 356 (807)
....|+|||||.+...|+.|.+.+....
T Consensus 122 G~nRGYAFVtf~~Ke~Aq~Aik~lnn~E 149 (506)
T KOG0117|consen 122 GDNRGYAFVTFCTKEEAQEAIKELNNYE 149 (506)
T ss_pred CCCcceEEEEeecHHHHHHHHHHhhCcc
Confidence 3467999999999999999999998873
No 54
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=47.84 E-value=41 Score=38.61 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=32.1
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
..+||.|.|||.++. +++|+++|+.+ |.|.+|.+.+|-
T Consensus 185 ~~~~l~v~nl~~~~t--e~~l~~~f~~~--G~i~~v~~~~d~ 222 (457)
T TIGR01622 185 NFLKLYVGNLHFNIT--EQELRQIFEPF--GDIEDVQLHRDP 222 (457)
T ss_pred CCCEEEEcCCCCCCC--HHHHHHHHHhc--CCeEEEEEEEcC
Confidence 379999999999875 68999999975 679999888764
No 55
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=47.12 E-value=36 Score=35.43 Aligned_cols=56 Identities=23% Similarity=0.238 Sum_probs=40.9
Q ss_pred CCCCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCCCCeeeCCcccCcchhHHHHHHHH
Q 044501 329 APGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIYWNHLGLTKLSLRLRRVLVN 407 (807)
Q Consensus 329 ~~~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~ 407 (807)
....|+|||-|++..+||.|...++.++.. +- ....+.|+.|- +.+||..||.--.
T Consensus 57 g~sKGCAFVKf~s~~eAqaAI~aLHgSqTm--pG---------ASSSLVVK~AD------------TdkER~lRRMQQm 112 (371)
T KOG0146|consen 57 GNSKGCAFVKFSSHAEAQAAINALHGSQTM--PG---------ASSSLVVKFAD------------TDKERTLRRMQQM 112 (371)
T ss_pred CCCCCceEEEeccchHHHHHHHHhcccccC--CC---------CccceEEEecc------------chHHHHHHHHHHH
Confidence 345699999999999999999999887532 11 12345677772 5689999997543
No 56
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=43.95 E-value=29 Score=35.61 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=27.0
Q ss_pred eEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 196 TIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 196 TVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
-|.|-|+|=+.+ ++.|++|||++ |+|.+++|+-|-
T Consensus 14 KifVggL~w~T~--~~~l~~yFeqf--GeI~eavvitd~ 48 (247)
T KOG0149|consen 14 KIFVGGLAWETH--KETLRRYFEQF--GEIVEAVVITDK 48 (247)
T ss_pred EEEEcCcccccc--hHHHHHHHHHh--CceEEEEEEecc
Confidence 488999998876 37999999996 567776666553
No 57
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=43.94 E-value=22 Score=32.94 Aligned_cols=30 Identities=10% Similarity=0.111 Sum_probs=17.1
Q ss_pred chHHHHHHHHHHHHHHHHHhhheeecCCCC
Q 044501 31 NIQYLLNISVIGLCFCVFIFLFVKLRSDHR 60 (807)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~~~f~~lR~~~~ 60 (807)
-+..+.-.+++|+++.++++.|++.|.++|
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444555556666666666667766665554
No 58
>PLN03120 nucleic acid binding protein; Provisional
Probab=43.81 E-value=38 Score=35.70 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=18.2
Q ss_pred CCCeeEEEEcCHHHHHHHHH
Q 044501 331 GAGVAFVMFKDVYTANKAVQ 350 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q 350 (807)
..+.|||||++..+|..|+.
T Consensus 42 ~~GfAFVtF~d~eaAe~All 61 (260)
T PLN03120 42 RSQIAYVTFKDPQGAETALL 61 (260)
T ss_pred CCCEEEEEeCcHHHHHHHHH
Confidence 46899999999999999995
No 59
>PF04806 EspF: EspF protein repeat; InterPro: IPR006891 Enteropathogenic Escherichia coli O127:H6 attaches to the intestinal muscosa through actin pedestals that are created after it has injected the Type III secretion protein EspF (E. coli secreted protein F-like protein from prophage U) into the cells. EspF recruits the actin machinery by activating the WASP (Wiscott-Aldrich syndrome protein) family of actin nucleating factors []. Subsequent cell-death (apoptosis) is caused by EspF being targeted to the mitochondria as a consequence of its mitochondrial targeting sequence. Import into mitochondria leads to a loss of membrane potential, leakage of cytochrome c and activation of the apoptotic caspase cascade. Mutation of leucine to glutamic at position 16 of EspF (L16E) resulted in the failure of EspF import into mitochondria; mitochondrial membrane potential was not affected and cell death abolished. This suggests that the targeting of EspF to mitochondria is essential for bacterial pathogenesis and apoptosis [, ].; PDB: 2KXC_B 2K42_B.
Probab=43.70 E-value=8.1 Score=28.29 Aligned_cols=19 Identities=32% Similarity=0.742 Sum_probs=2.0
Q ss_pred CCCCCCCCC-CCCCCCCCCC
Q 044501 8 INDPLSPPP-SHDSDADIPG 26 (807)
Q Consensus 8 ~~~~~~~~~-~~~~~~~~~~ 26 (807)
++-|||||| |.+++..++.
T Consensus 15 P~rPAPpPPtQNnQs~~lp~ 34 (47)
T PF04806_consen 15 PNRPAPPPPTQNNQSRPLPP 34 (47)
T ss_dssp -SS---------------SS
T ss_pred CCCCCCCCCCcccccCCCch
Confidence 456777777 4444444443
No 60
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=43.63 E-value=34 Score=36.32 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=36.0
Q ss_pred CCCCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 187 PNANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 187 ~~~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
+++..-.-+|++|..|+-+. +|.+|++.|+.+ |.|+++.+++|.
T Consensus 94 p~a~gDPy~TLFv~RLnydT--~EskLrreF~~Y--G~IkrirlV~d~ 137 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDT--SESKLRREFEKY--GPIKRIRLVRDK 137 (335)
T ss_pred CcccCCccceeeeeeccccc--cHHHHHHHHHhc--CcceeEEEeeec
Confidence 34444567999999999877 478999999987 459999999993
No 61
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=42.36 E-value=31 Score=26.88 Aligned_cols=33 Identities=30% Similarity=0.425 Sum_probs=25.9
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
+++|-|+|.|.+.. +.+.++|+++ |.|.++.+.
T Consensus 1 ~~wI~V~Gf~~~~~---~~vl~~F~~f--GeI~~~~~~ 33 (53)
T PF14605_consen 1 STWISVSGFPPDLA---EEVLEHFASF--GEIVDIYVP 33 (53)
T ss_pred CcEEEEEeECchHH---HHHHHHHHhc--CCEEEEEcC
Confidence 37899999998865 5788899984 678877655
No 62
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=41.70 E-value=35 Score=35.12 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=31.0
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
.+||.|.|||.+.. ++.|+++|+++ |.+.++.+.+|-
T Consensus 115 ~~~l~v~nL~~~~~--~~~l~~~F~~~--g~~~~~~~~~d~ 151 (306)
T COG0724 115 NNTLFVGNLPYDVT--EEDLRELFKKF--GPVKRVRLVRDR 151 (306)
T ss_pred CceEEEeCCCCCCC--HHHHHHHHHhc--CceeEEEeeecc
Confidence 59999999998885 68999999986 457888877774
No 63
>smart00360 RRM RNA recognition motif.
Probab=41.29 E-value=32 Score=26.76 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=24.9
Q ss_pred EecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 199 VQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 199 V~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
|.|+|.+.. +++|+++|++. |.|.++.+.++-
T Consensus 1 i~~l~~~~~--~~~l~~~f~~~--g~v~~~~i~~~~ 32 (71)
T smart00360 1 VGNLPPDVT--EEELRELFSKF--GKIESVRLVRDK 32 (71)
T ss_pred CCCCCcccC--HHHHHHHHHhh--CCEeEEEEEeCC
Confidence 468898875 57999999976 568888877654
No 64
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=38.12 E-value=27 Score=41.64 Aligned_cols=14 Identities=14% Similarity=0.083 Sum_probs=7.0
Q ss_pred eCCCCCCeeeCCcc
Q 044501 380 RAPLATDIYWNHLG 393 (807)
Q Consensus 380 ~AP~P~DIiW~NL~ 393 (807)
.|+.-+|..=++++
T Consensus 922 ~~~~e~dkF~ekM~ 935 (1102)
T KOG1924|consen 922 IAGNEHDKFVEKMT 935 (1102)
T ss_pred CCCcchhhHHHHhh
Confidence 34345565555543
No 65
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=37.33 E-value=39 Score=40.21 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=32.0
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
..++|.|.|||.++. +++|+++|+.+ |.|.++.+.+|-
T Consensus 203 ~~~rLfVgnLp~~vt--eedLk~lFs~F--G~I~svrl~~D~ 240 (612)
T TIGR01645 203 KFNRIYVASVHPDLS--ETDIKSVFEAF--GEIVKCQLARAP 240 (612)
T ss_pred ccceEEeecCCCCCC--HHHHHHHHhhc--CCeeEEEEEecC
Confidence 357999999999985 57999999985 679999988764
No 66
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=37.07 E-value=52 Score=33.52 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.2
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhhh
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNEK 356 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~~ 356 (807)
..+.|||||.|..+|..|.+.+...+
T Consensus 76 ~~pvaFatF~s~q~A~aamnaLNGvr 101 (284)
T KOG1457|consen 76 CKPVAFATFTSHQFALAAMNALNGVR 101 (284)
T ss_pred ccceEEEEecchHHHHHHHHHhcCee
Confidence 45899999999999999999887653
No 67
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=35.95 E-value=1.9e+02 Score=29.14 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=52.8
Q ss_pred HHHHhhhchhhhhHHHHHHHHHHHHHhhhceeEEEeeccCCCCCCCchhHHHHHHHHHHHHHHHHH-HHHHHHHhcCCC-
Q 044501 669 ALTLIYSSFAPLVVPVGAVYFGYRYVVDKYNFLFVYRVRGFPAGNDGRLMDTVLGIMRFCVDLFLL-SMLLFFSVQGDS- 746 (807)
Q Consensus 669 ~I~l~Ys~i~PlIl~f~~~yF~~~y~v~Ky~llyvy~~~~e~~~s~G~~~~~~~~~~~~~l~l~q~-~~~~~f~~~~~~- 746 (807)
.+..++..-.|+.++.+++||+....+-+.|.=+.++. |+ .+.+..|+.+.-+ +..|...+++..
T Consensus 47 sll~v~~~~~~~~i~~~i~yf~yLrYiL~~~~~f~id~--ep-----------YR~FY~~Isli~~l~~~gyvlvr~~s~ 113 (206)
T PF09874_consen 47 SLLYVFFISPLILIPLFIFYFIYLRYILIRNRNFMIDF--EP-----------YRFFYYGISLIGFLSFLGYVLVRRFSF 113 (206)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhccceeEech--hH-----------HHHHHHHHhhhhheeecchhhheeccc
Confidence 34445544455667788889988877766665555543 32 2333444433322 233444444432
Q ss_pred Cccc--hhHHHHHHHHHHHhcCccCccchhHHHh
Q 044501 747 TKLQ--AIFTLGLLVLYKLLPSDHDSFHPTLLEG 778 (807)
Q Consensus 747 ~~~~--~~~~i~l~~~t~~~~~~~~~~~~~~~~~ 778 (807)
.... +.+.+++++...++++++.+|++-.-.+
T Consensus 114 ~~~~y~~yL~~v~laVl~fr~~Fr~ky~RdyTyG 147 (206)
T PF09874_consen 114 EVYPYYTYLGFVFLAVLAFRYYFRSKYGRDYTYG 147 (206)
T ss_pred hhhhHHHHHHHHHHHHHHHhhheeeeecccceeE
Confidence 1122 3344445555556668899999877444
No 68
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=35.19 E-value=34 Score=30.68 Aligned_cols=24 Identities=33% Similarity=0.706 Sum_probs=21.0
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhh
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRN 354 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~ 354 (807)
..|+|||.+++..+|..|+..+..
T Consensus 56 TrGTAFVVYedi~dAk~A~dhlsg 79 (124)
T KOG0114|consen 56 TRGTAFVVYEDIFDAKKACDHLSG 79 (124)
T ss_pred cCceEEEEehHhhhHHHHHHHhcc
Confidence 469999999999999999987654
No 69
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=34.83 E-value=55 Score=29.12 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=24.6
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhhhc
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNEKK 357 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~~~ 357 (807)
...|+|||-|.+..+|....+.+...++
T Consensus 43 ~N~GYAFVNf~~~~~~~~F~~~f~g~~w 70 (97)
T PF04059_consen 43 CNLGYAFVNFTSPQAAIRFYKAFNGKKW 70 (97)
T ss_pred CceEEEEEEcCCHHHHHHHHHHHcCCcc
Confidence 4689999999999999999999887654
No 70
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=33.87 E-value=43 Score=36.05 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.4
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
..|-+||||++..||..|.+.++..
T Consensus 135 SKGFGFVTmen~~dadRARa~LHgt 159 (376)
T KOG0125|consen 135 SKGFGFVTMENPADADRARAELHGT 159 (376)
T ss_pred CCccceEEecChhhHHHHHHHhhcc
Confidence 3588999999999999999998775
No 71
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=32.64 E-value=67 Score=37.35 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=32.2
Q ss_pred ccceeEEEecCCCC-CCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 192 TAIFTIMVQGLPKS-LGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 192 ~~~rTVlV~~IP~~-~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
....+|+|.|+|.+ . +++.|++.|+++ |.|.+|.+.+|-
T Consensus 273 ~~~~~l~v~nL~~~~v--t~~~L~~lF~~y--G~V~~vki~~~~ 312 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKV--NCDRLFNLFCVY--GNVERVKFMKNK 312 (481)
T ss_pred CCCCEEEEeCCCCCCC--CHHHHHHHHHhc--CCeEEEEEEeCC
Confidence 35689999999974 5 468999999985 689999998773
No 72
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=32.64 E-value=41 Score=37.45 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=24.8
Q ss_pred CCCCCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 328 RAPGAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 328 ~~~~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
+.|+.++|.|+|++++.++.|++.+..+
T Consensus 82 ~GK~rGcavVEFk~~E~~qKa~E~lnk~ 109 (608)
T KOG4212|consen 82 SGKARGCAVVEFKDPENVQKALEKLNKY 109 (608)
T ss_pred CCCcCCceEEEeeCHHHHHHHHHHhhhc
Confidence 3567899999999999999999998775
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=30.01 E-value=69 Score=38.05 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.5
Q ss_pred CCCCCCeeEEEEcCHHHHHHHHHHhhh
Q 044501 328 RAPGAGVAFVMFKDVYTANKAVQDFRN 354 (807)
Q Consensus 328 ~~~~~~~aFVtF~s~~~a~~a~q~~~~ 354 (807)
++..+|.|||.|.+..+|+.|++.++.
T Consensus 556 k~lSmGfgFVEF~~~e~A~~a~k~lqg 582 (725)
T KOG0110|consen 556 KYLSMGFGFVEFAKPESAQAALKALQG 582 (725)
T ss_pred cccccceeEEEecCHHHHHHHHHHhcC
Confidence 355679999999999999999998773
No 74
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=29.80 E-value=1e+02 Score=25.74 Aligned_cols=57 Identities=16% Similarity=0.023 Sum_probs=27.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHHHHHhhheeecCCCCCCCCC
Q 044501 4 PLPSINDPLSPPPSHDSDADIPGAWYGNIQYLLNISVIGLCFCVFIFLFVKLRSDHRRIPGP 65 (807)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~f~~lR~~~~~~~~p 65 (807)
.++++.+|..+|++..+-+.=|+ -...|+.-+.+.+++. .+=||.+|-.-|+++|.+
T Consensus 6 ~~~s~~~~s~~~~~~~~~~~eqk---t~faFV~~L~~fL~~l--iVRCfrIllDPYssmPtS 62 (81)
T PF11057_consen 6 CLPSPLPMSGNPLSASSLDLEQK---TAFAFVGLLCLFLGLL--IVRCFRILLDPYSSMPTS 62 (81)
T ss_pred cCCCCcccCCCCCcccccccccc---eeehHHHHHHHHHHHH--HHHHHHHHcChhhcCCcc
Confidence 34444455555544433333332 2445555444444433 335665555667777753
No 75
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=28.47 E-value=1.2e+02 Score=33.98 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=33.7
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcc
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLC 235 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~ 235 (807)
+..+|+|.|||||-+++= +.|++.+++.. |+|+-|.+..|-.
T Consensus 41 ~~r~R~vfItNIpyd~rW--qdLKdLvrekv-Gev~yveLl~D~~ 82 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRW--QDLKDLVREKV-GEVEYVELLFDES 82 (608)
T ss_pred ccccceEEEecCcchhhh--HhHHHHHHHhc-CceEeeeeecccC
Confidence 345889999999999883 78999998764 6788888777743
No 76
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=27.94 E-value=68 Score=37.35 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=30.3
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhC---------C-CcEEEEEeecC
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKY---------P-GKVYKVIMPMD 233 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~---------p-g~V~~V~v~~d 233 (807)
+..+|||.|.|||.+.. +++|+++|++.+ | +.|.++++..+
T Consensus 172 ~~~~r~lyVgnLp~~~t--~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~ 222 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFV--EEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKE 222 (509)
T ss_pred CccccEEEEeCCCCCCC--HHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCC
Confidence 44589999999999875 689999998741 1 24666766654
No 77
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=27.35 E-value=1.1e+02 Score=26.55 Aligned_cols=17 Identities=6% Similarity=0.178 Sum_probs=8.7
Q ss_pred chHHHHHHHHHHHHHHH
Q 044501 31 NIQYLLNISVIGLCFCV 47 (807)
Q Consensus 31 ~~~~~~~l~~~~~~~~~ 47 (807)
+...+.+++..|++.+.
T Consensus 38 v~v~i~~lvaVg~~YL~ 54 (91)
T PF01708_consen 38 VEVAIFTLVAVGCLYLA 54 (91)
T ss_pred eeeeehHHHHHHHHHHH
Confidence 34444455555555544
No 78
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.14 E-value=98 Score=25.68 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=19.6
Q ss_pred CeeEEEEcCHHHHHHHHHHhhhh
Q 044501 333 GVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 333 ~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
....|+|+|..+|-.+-+.+...
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~ 24 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKN 24 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHC
Confidence 46899999999999998887765
No 79
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=25.60 E-value=1.1e+02 Score=30.09 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=33.1
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcch
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLCA 236 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~~ 236 (807)
+.-|.|-|++.... +.+|+..|..+ |.+.+|||+++-.-
T Consensus 10 ~~kVYVGnL~~~a~--k~eLE~~F~~y--G~lrsvWvArnPPG 48 (195)
T KOG0107|consen 10 NTKVYVGNLGSRAT--KRELERAFSKY--GPLRSVWVARNPPG 48 (195)
T ss_pred CceEEeccCCCCcc--hHHHHHHHHhc--CcceeEEEeecCCC
Confidence 67899999999876 57999999986 56999999998663
No 80
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=25.29 E-value=60 Score=32.17 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=32.2
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
++.||.|.||++..+ ++.|.+.|-+. |.|.++++.+|-
T Consensus 8 qd~tiyvgnld~kvs--~~~l~EL~iqa--gpVv~i~iPkDr 45 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVS--EELLYELFIQA--GPVVNLHIPKDR 45 (203)
T ss_pred CCceEEEecCCHHHH--HHHHHHHHHhc--Cceeeeecchhh
Confidence 479999999999886 57899999776 459999999875
No 81
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=25.28 E-value=1.3e+02 Score=26.12 Aligned_cols=42 Identities=24% Similarity=0.360 Sum_probs=24.3
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCCCCe
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDI 387 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P~DI 387 (807)
.++|.|-|.++..|..|.+-+.... .. ++...|...|.+.|.
T Consensus 39 ~~tAilrF~~~~~A~RA~KRmegEd--Vf------------G~kI~v~~~~~~r~~ 80 (90)
T PF11608_consen 39 GGTAILRFPNQEFAERAQKRMEGED--VF------------GNKISVSFSPKNREF 80 (90)
T ss_dssp TT-EEEEESSHHHHHHHHHHHTT----SS------------SS--EEESS--S---
T ss_pred CCEEEEEeCCHHHHHHHHHhhcccc--cc------------cceEEEEEcCCcccc
Confidence 5899999999999999998765431 11 344556677666654
No 82
>PLN03121 nucleic acid binding protein; Provisional
Probab=25.28 E-value=1e+02 Score=32.15 Aligned_cols=19 Identities=47% Similarity=0.669 Sum_probs=16.9
Q ss_pred CCeeEEEEcCHHHHHHHHH
Q 044501 332 AGVAFVMFKDVYTANKAVQ 350 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q 350 (807)
.+.|||+|+++.+|..|+.
T Consensus 44 ~gfAfVtF~d~~aaetAll 62 (243)
T PLN03121 44 ACTAYVTFKDAYALETAVL 62 (243)
T ss_pred ceEEEEEECCHHHHHHHHh
Confidence 4799999999999988884
No 83
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=25.13 E-value=49 Score=37.54 Aligned_cols=8 Identities=25% Similarity=0.297 Sum_probs=4.1
Q ss_pred cccccccc
Q 044501 134 KTTINHIE 141 (807)
Q Consensus 134 ~lTisNv~ 141 (807)
..+|+|..
T Consensus 145 g~~ItN~~ 152 (465)
T PF01690_consen 145 GCTITNYK 152 (465)
T ss_pred CcEEeccc
Confidence 44555554
No 84
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=25.10 E-value=84 Score=36.25 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=29.0
Q ss_pred eeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 195 FTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 195 rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
+||+|+|+|=+.. |+.|.++|+++ |.|..+.+|.|
T Consensus 293 ~tVFvRNL~fD~t--EEel~~~fskF--G~v~ya~iV~~ 327 (678)
T KOG0127|consen 293 KTVFVRNLPFDTT--EEELKEHFSKF--GEVKYAIIVKD 327 (678)
T ss_pred ceEEEecCCcccc--HHHHHHHHHhh--ccceeEEEEec
Confidence 8999999998774 78999999987 56777776655
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=24.99 E-value=1.1e+02 Score=35.44 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=28.5
Q ss_pred CCCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEE
Q 044501 188 NANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKV 228 (807)
Q Consensus 188 ~~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V 228 (807)
......++|++|.|+|.... +++|++.|+.+ |.|+.|
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vs--n~~L~~~f~~y--Geir~i 105 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVS--NDTLLRIFGAY--GEIREI 105 (549)
T ss_pred CcccCccceEEEEecCCcCC--HHHHHHHHHhh--cchhhh
Confidence 34456799999999999996 47899999875 445433
No 86
>PHA03164 hypothetical protein; Provisional
Probab=24.17 E-value=1.1e+02 Score=25.67 Aligned_cols=27 Identities=11% Similarity=0.309 Sum_probs=17.8
Q ss_pred cchHHHHHHHHHHHHHHHHHhhheeec
Q 044501 30 GNIQYLLNISVIGLCFCVFIFLFVKLR 56 (807)
Q Consensus 30 g~~~~~~~l~~~~~~~~~~~~~f~~lR 56 (807)
|..-.++.|+++.+++++|++-....|
T Consensus 58 ftFlvLtgLaIamILfiifvlyvFnVn 84 (88)
T PHA03164 58 FTFLVLTGLAIAMILFIIFVLYVFNVN 84 (88)
T ss_pred eehHHHHHHHHHHHHHHHHHHHheeec
Confidence 456667778888888877665444443
No 87
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=24.07 E-value=1.7e+02 Score=27.55 Aligned_cols=41 Identities=17% Similarity=0.322 Sum_probs=33.4
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
+.++.-.-|+||+|-++.. |+++.+-|.++ |.|+++++..|
T Consensus 67 qrSVEGwIi~VtgvHeEat--Eedi~d~F~dy--GeiKNihLNLD 107 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEAT--EEDIHDKFADY--GEIKNIHLNLD 107 (170)
T ss_pred ccceeeEEEEEeccCcchh--HHHHHHHHhhc--ccccceeeccc
Confidence 4567788899999999885 67999999886 57899887655
No 88
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=22.75 E-value=64 Score=38.76 Aligned_cols=6 Identities=0% Similarity=-0.407 Sum_probs=2.7
Q ss_pred hhhhhH
Q 044501 68 LLTKLL 73 (807)
Q Consensus 68 ~~~Wi~ 73 (807)
.+.|-+
T Consensus 628 r~nW~k 633 (1102)
T KOG1924|consen 628 RFNWSK 633 (1102)
T ss_pred cCCccc
Confidence 345543
No 89
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=22.41 E-value=79 Score=35.33 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=32.8
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
..+.+|||++.|+|.+-.. +.|.+.|... |.|..|.+|.=
T Consensus 227 eel~srtivaenLP~Dh~~--enl~kiFg~~--G~IksIRIckP 266 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSY--ENLSKIFGTV--GSIKSIRICKP 266 (484)
T ss_pred cccccceEEEecCCcchHH--HHHHHHhhcc--cceeeeeecCC
Confidence 3468999999999987662 6899999864 68999998875
No 90
>PF07810 TMC: TMC domain; InterPro: IPR012496 These sequences are similar to a region conserved amongst various protein products of the transmembrane channel-like (TMC) gene family, such as Transmembrane channel-like protein 3 (Q7TN63 from SWISSPROT) and EVIN2 (Q8IU68 from SWISSPROT) - this region is termed the TMC domain []. Mutations in these genes are implicated in a number of human conditions, such as deafness and epidermodysplasia verruciformis []. TMC proteins are thought to have important cellular roles, and may be modifiers of ion channels or transporters []. ; GO: 0016021 integral to membrane
Probab=22.41 E-value=77 Score=28.97 Aligned_cols=53 Identities=17% Similarity=0.346 Sum_probs=37.9
Q ss_pred CCCcchhhhhHH---HHHHHHHHHhhhchhhhhHHHHHHHHHHHHHhhhceeEEEeecc
Q 044501 652 KQTFDFAQYYAF---DLTIFALTLIYSSFAPLVVPVGAVYFGYRYVVDKYNFLFVYRVR 707 (807)
Q Consensus 652 ~~~f~~g~~ya~---~l~v~~I~l~Ys~i~PlIl~f~~~yF~~~y~v~Ky~llyvy~~~ 707 (807)
.++||.+...=. .=.+..+|+.||++.|+ ++.+-+.+.+++.|+.+++...|.
T Consensus 49 ~~eF~i~~nvL~liY~Qtl~WiG~ffsPlLP~---i~~ik~~i~FYvKk~sll~~c~p~ 104 (111)
T PF07810_consen 49 KPEFDIPKNVLDLIYNQTLVWIGMFFSPLLPA---INVIKLFILFYVKKFSLLYNCQPP 104 (111)
T ss_pred CCCccHhhhHHHHHHcchhhhhhHHhchhHHH---HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 356666654311 22456888898887777 456677788899999999999874
No 91
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=21.80 E-value=2.1e+02 Score=30.95 Aligned_cols=59 Identities=14% Similarity=0.158 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHHHHhhhceeEEEeeccCCCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044501 679 PLVVPVGAVYFGYRYVVDKYNFLFVYRVRGFPAGNDG---RLMDTVLGIMRFCVDLFLLSMLLFFS 741 (807)
Q Consensus 679 PlIl~f~~~yF~~~y~v~Ky~llyvy~~~~e~~~s~G---~~~~~~~~~~~~~l~l~q~~~~~~f~ 741 (807)
|..+++|+++.++.+.+||+-+.=+-.... +.. ..+|++.--++.|+++++....-+|.
T Consensus 46 ~~ai~~glvwgl~I~~lDR~ivss~~~~~~----~~~~~~~~~~R~~lAvliaivIs~pl~l~iF~ 107 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNLDRFIVSSIRKSDG----SRKRLLQALPRLLLAVLIAIVISEPLELKIFE 107 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999998875554321 112 33454444455555555555554444
No 92
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=21.74 E-value=1e+02 Score=30.57 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=26.5
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEE
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVI 229 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~ 229 (807)
.+++|.|-|+|.+++ |.++++.|-++ |.|..|-
T Consensus 5 ~~~~iyvGNLP~diR--ekeieDlFyKy--g~i~~ie 37 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIR--EKEIEDLFYKY--GRIREIE 37 (241)
T ss_pred ccceEEecCCCcchh--hccHHHHHhhh--cceEEEE
Confidence 379999999999998 46899999876 4566553
No 93
>PHA03283 envelope glycoprotein E; Provisional
Probab=21.69 E-value=1.4e+02 Score=34.48 Aligned_cols=39 Identities=8% Similarity=0.091 Sum_probs=21.3
Q ss_pred HHHHHhhheeecCCCCCCCCCchhhhhhHHhhcCChhHH
Q 044501 45 FCVFIFLFVKLRSDHRRIPGPAALLTKLLAVWHATCREI 83 (807)
Q Consensus 45 ~~~~~~~f~~lR~~~~~~~~p~~~~~Wi~~~~~~~d~~i 83 (807)
.++.+++....|+..||.|.=-++|+=+..-+-+.|.+.
T Consensus 415 ~~l~vw~c~~~r~~~~~~y~ilnpf~~vytslptn~~~~ 453 (542)
T PHA03283 415 VALVVWGCILYRRSNRKPYEVLNPFETVYTSVPSNDPEV 453 (542)
T ss_pred HHHhhhheeeehhhcCCcccccCCCccceeccCCCCCcc
Confidence 333556666667777777764444544444444455543
No 94
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=20.95 E-value=1.3e+02 Score=32.22 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.6
Q ss_pred CCCCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 329 APGAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 329 ~~~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
.++.|+|||.|+++.+.+.|.+.....
T Consensus 140 gkskGYAFIeye~erdm~~AYK~adG~ 166 (335)
T KOG0113|consen 140 GKSKGYAFIEYEHERDMKAAYKDADGI 166 (335)
T ss_pred CCccceEEEEeccHHHHHHHHHhccCc
Confidence 467899999999999999999987654
No 95
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.49 E-value=3.9e+02 Score=26.85 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=27.9
Q ss_pred chhhhhHHHHHHHHHHHhhhch-hhhhHHHHHHHHHHHHHhhhce
Q 044501 656 DFAQYYAFDLTIFALTLIYSSF-APLVVPVGAVYFGYRYVVDKYN 699 (807)
Q Consensus 656 ~~g~~ya~~l~v~~I~l~Ys~i-~PlIl~f~~~yF~~~y~v~Ky~ 699 (807)
|+.+.-.+-..++.+.+.||.+ .|+.+.+-...++.-++.|++.
T Consensus 65 Nl~yF~~NY~~iv~~~~~~sLi~~P~~Livl~~lv~~w~~LY~~r 109 (187)
T KOG3142|consen 65 NLSYFRVNYVIIVAILLFLSLITHPLSLIVLLALVAAWLFLYFLR 109 (187)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHheeeec
Confidence 4444445555677777777766 6777766666666666666655
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.33 E-value=1e+02 Score=28.73 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=24.1
Q ss_pred HHHHhhhchhhhhHHHHHHHHHHHHHhhhc
Q 044501 669 ALTLIYSSFAPLVVPVGAVYFGYRYVVDKY 698 (807)
Q Consensus 669 ~I~l~Ys~i~PlIl~f~~~yF~~~y~v~Ky 698 (807)
++++++++++-+|....+++|++.-.-.|.
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 688899999999999999999988777663
Done!