Query 044501
Match_columns 807
No_of_seqs 256 out of 987
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 06:10:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnz_A Probable RNA-binding pr 97.1 0.0037 1.3E-07 53.7 11.2 35 193-231 4-38 (95)
2 4fxv_A ELAV-like protein 1; RN 97.1 0.0021 7.2E-08 56.2 9.0 35 194-232 19-53 (99)
3 2lxi_A RNA-binding protein 10; 97.0 0.0013 4.6E-08 56.5 7.2 26 194-221 1-26 (91)
4 1whw_A Hypothetical protein ri 97.0 0.0076 2.6E-07 52.2 11.9 35 192-230 6-40 (99)
5 3s8s_A Histone-lysine N-methyl 96.9 0.0033 1.1E-07 56.1 9.3 37 193-233 5-41 (110)
6 1x5u_A Splicing factor 3B subu 96.9 0.0077 2.6E-07 52.8 11.1 39 189-231 10-48 (105)
7 2cph_A RNA binding motif prote 96.8 0.01 3.4E-07 52.2 11.6 39 189-231 10-48 (107)
8 2dgs_A DAZ-associated protein 96.8 0.011 3.9E-07 51.1 11.6 37 191-231 7-43 (99)
9 2cqi_A Nucleolysin TIAR; RNA r 96.8 0.013 4.6E-07 51.1 12.2 38 190-231 11-48 (103)
10 2x1f_A MRNA 3'-END-processing 96.8 0.0069 2.4E-07 52.2 10.1 34 194-231 2-35 (96)
11 3mdf_A Peptidyl-prolyl CIS-tra 96.8 0.0055 1.9E-07 51.3 9.1 35 193-231 6-40 (85)
12 2cq3_A RNA-binding protein 9; 96.8 0.015 5.3E-07 50.6 12.3 38 189-230 10-47 (103)
13 2cqc_A Arginine/serine-rich sp 96.8 0.0069 2.4E-07 51.9 9.8 39 189-231 10-48 (95)
14 2do4_A Squamous cell carcinoma 96.8 0.01 3.6E-07 51.4 10.9 39 189-231 12-50 (100)
15 2e5h_A Zinc finger CCHC-type a 96.7 0.0095 3.2E-07 51.0 10.5 38 190-231 12-49 (94)
16 2dgo_A Cytotoxic granule-assoc 96.7 0.011 3.7E-07 52.8 11.0 39 189-231 10-48 (115)
17 1fxl_A Paraneoplastic encephal 96.7 0.0099 3.4E-07 56.2 11.5 60 332-405 44-109 (167)
18 1x5s_A Cold-inducible RNA-bind 96.7 0.0078 2.7E-07 52.4 9.8 36 191-230 9-44 (102)
19 4a8x_A RNA-binding protein wit 96.7 0.0051 1.7E-07 51.9 8.2 36 192-231 2-37 (88)
20 2jrs_A RNA-binding protein 39; 96.7 0.0072 2.5E-07 53.6 9.4 38 190-231 22-59 (108)
21 3bs9_A Nucleolysin TIA-1 isofo 96.7 0.0069 2.3E-07 51.0 8.8 35 193-231 5-39 (87)
22 1p27_B RNA-binding protein 8A; 96.6 0.011 3.8E-07 51.8 10.2 39 189-231 18-56 (106)
23 2cq0_A Eukaryotic translation 96.6 0.0084 2.9E-07 52.4 9.2 39 189-231 10-48 (103)
24 4f25_A Polyadenylate-binding p 96.6 0.0079 2.7E-07 53.9 9.0 35 193-231 4-38 (115)
25 2dgp_A Bruno-like 4, RNA bindi 96.6 0.017 6E-07 50.5 11.1 38 189-230 8-45 (106)
26 2cqd_A RNA-binding region cont 96.6 0.014 4.9E-07 52.1 10.6 39 189-231 12-50 (116)
27 1x4h_A RNA-binding protein 28; 96.5 0.019 6.6E-07 50.7 11.4 38 190-231 11-48 (111)
28 2dgv_A HnRNP M, heterogeneous 96.5 0.011 3.6E-07 50.4 9.3 35 192-230 6-40 (92)
29 1oo0_B CG8781-PA, drosophila Y 96.5 0.015 5.3E-07 51.3 10.7 39 189-231 21-59 (110)
30 3md1_A Nuclear and cytoplasmic 96.5 0.013 4.3E-07 48.8 9.5 35 194-232 1-35 (83)
31 1x5t_A Splicing factor 3B subu 96.5 0.0073 2.5E-07 51.9 8.1 39 331-383 47-85 (96)
32 2d9p_A Polyadenylate-binding p 96.5 0.014 4.7E-07 51.0 9.9 38 190-231 11-48 (103)
33 2cqb_A Peptidyl-prolyl CIS-tra 96.5 0.011 3.6E-07 51.5 9.2 36 190-229 8-43 (102)
34 2dnm_A SRP46 splicing factor; 96.5 0.014 4.8E-07 50.9 9.9 38 190-231 9-46 (103)
35 1wi8_A EIF-4B, eukaryotic tran 96.5 0.024 8.2E-07 49.5 11.4 37 190-231 11-47 (104)
36 2lkz_A RNA-binding protein 5; 96.5 0.0053 1.8E-07 53.2 6.8 28 192-221 7-34 (95)
37 2cpz_A CUG triplet repeat RNA- 96.4 0.01 3.5E-07 53.1 8.6 37 191-231 22-58 (115)
38 3p5t_L Cleavage and polyadenyl 96.4 0.0048 1.6E-07 52.6 6.1 41 332-386 45-85 (90)
39 3md3_A Nuclear and cytoplasmic 96.4 0.00095 3.2E-08 63.4 1.6 36 195-234 1-36 (166)
40 2dnh_A Bruno-like 5, RNA bindi 96.4 0.023 8E-07 49.6 10.6 37 191-231 12-48 (105)
41 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.4 0.022 7.5E-07 52.5 11.0 37 191-231 60-96 (140)
42 1b7f_A Protein (SXL-lethal pro 96.3 0.019 6.7E-07 54.3 10.8 60 332-405 45-110 (168)
43 3ex7_B RNA-binding protein 8A; 96.3 0.023 7.8E-07 51.5 10.6 39 189-231 17-55 (126)
44 2fy1_A RNA-binding motif prote 96.3 0.02 6.7E-07 51.4 9.8 32 194-229 7-38 (116)
45 2khc_A Testis-specific RNP-typ 96.2 0.016 5.5E-07 51.9 9.1 37 191-231 37-73 (118)
46 1h2v_Z 20 kDa nuclear CAP bind 96.2 0.019 6.3E-07 54.4 10.0 37 192-232 37-73 (156)
47 2dng_A Eukaryotic translation 96.2 0.026 8.8E-07 49.2 9.8 37 191-232 12-48 (103)
48 2la6_A RNA-binding protein FUS 96.2 0.021 7.1E-07 49.4 9.1 35 189-227 8-42 (99)
49 4f02_A Polyadenylate-binding p 96.2 0.027 9.4E-07 56.2 11.2 38 191-232 12-49 (213)
50 1x4a_A Splicing factor, argini 96.2 0.045 1.6E-06 48.2 11.5 36 190-229 18-53 (109)
51 2kxn_B Transformer-2 protein h 96.1 0.025 8.5E-07 51.8 9.9 38 190-231 42-79 (129)
52 1wg5_A Heterogeneous nuclear r 96.1 0.03 1E-06 49.0 10.0 34 190-227 11-44 (104)
53 2dnq_A RNA-binding protein 4B; 96.1 0.044 1.5E-06 46.4 10.7 33 192-228 6-38 (90)
54 2cpj_A Non-POU domain-containi 96.1 0.021 7.2E-07 49.4 8.7 38 333-384 52-89 (99)
55 2kt5_A RNA and export factor-b 96.1 0.036 1.2E-06 50.2 10.6 35 191-229 32-66 (124)
56 3ns6_A Eukaryotic translation 96.0 0.012 4.2E-07 51.2 7.0 35 194-232 6-46 (100)
57 1x4g_A Nucleolysin TIAR; struc 96.0 0.035 1.2E-06 48.9 10.2 34 192-229 23-56 (109)
58 1u6f_A Tcubp1, RNA-binding pro 96.0 0.033 1.1E-06 51.4 10.0 37 191-231 39-75 (139)
59 2dgx_A KIAA0430 protein; RRM d 96.0 0.078 2.7E-06 45.5 11.7 36 333-382 53-88 (96)
60 1p1t_A Cleavage stimulation fa 95.9 0.014 4.8E-07 50.9 6.8 35 192-230 6-40 (104)
61 2dis_A Unnamed protein product 95.8 0.059 2E-06 47.3 10.5 36 192-230 6-41 (109)
62 2cpe_A RNA-binding protein EWS 95.8 0.042 1.4E-06 48.7 9.5 29 190-220 11-39 (113)
63 2cpi_A CCR4-NOT transcription 95.8 0.031 1.1E-06 49.5 8.5 39 190-232 11-52 (111)
64 2qfj_A FBP-interacting repress 95.7 0.07 2.4E-06 52.8 11.8 35 193-231 27-61 (216)
65 3lqv_A PRE-mRNA branch site pr 95.7 0.068 2.3E-06 47.5 10.4 35 193-231 7-41 (115)
66 2lea_A Serine/arginine-rich sp 95.6 0.031 1E-06 51.7 8.3 38 189-230 42-79 (135)
67 2kn4_A Immunoglobulin G-bindin 95.6 0.078 2.7E-06 50.0 11.3 37 191-231 67-103 (158)
68 2nlw_A Eukaryotic translation 95.6 0.059 2E-06 47.2 9.5 38 332-383 61-99 (105)
69 2j76_E EIF-4B, EIF4B, eukaryot 95.5 0.036 1.2E-06 48.1 7.9 37 190-231 15-51 (100)
70 2ki2_A SS-DNA binding protein 95.5 0.014 4.8E-07 49.5 5.1 32 195-230 2-33 (90)
71 1nu4_A U1A RNA binding domain; 95.5 0.085 2.9E-06 45.1 10.1 41 333-387 52-92 (97)
72 2fc8_A NCL protein; structure 95.5 0.036 1.2E-06 48.1 7.7 39 332-384 54-92 (102)
73 3n9u_C Cleavage and polyadenyl 95.3 0.059 2E-06 51.1 9.2 39 193-233 54-92 (156)
74 2i2y_A Fusion protein consists 95.3 0.11 3.9E-06 48.4 11.1 37 190-230 69-105 (150)
75 1l3k_A Heterogeneous nuclear r 95.3 0.1 3.4E-06 50.7 11.1 38 190-231 9-46 (196)
76 2ek1_A RNA-binding protein 12; 95.2 0.019 6.5E-07 49.1 5.0 27 192-220 13-39 (95)
77 2f3j_A RNA and export factor b 95.2 0.058 2E-06 52.3 8.9 41 332-386 129-169 (177)
78 1wf1_A RNA-binding protein RAL 95.1 0.068 2.3E-06 47.1 8.4 38 333-384 63-100 (110)
79 1rk8_A CG8781-PA, CG8781-PA pr 95.0 0.093 3.2E-06 50.0 9.7 38 190-231 68-105 (165)
80 2jvo_A Nucleolar protein 3; nu 94.9 0.077 2.7E-06 46.8 8.2 29 190-220 27-55 (108)
81 3sde_A Paraspeckle component 1 94.8 0.15 5.2E-06 52.4 11.4 58 333-404 59-116 (261)
82 2adc_A Polypyrimidine tract-bi 94.6 0.2 6.7E-06 50.4 11.5 36 190-229 30-66 (229)
83 1b7f_A Protein (SXL-lethal pro 94.6 0.15 5.3E-06 47.9 10.1 39 189-231 84-122 (168)
84 2qfj_A FBP-interacting repress 94.5 0.12 4.2E-06 51.0 9.6 36 193-232 124-159 (216)
85 3tyt_A Heterogeneous nuclear r 94.4 0.33 1.1E-05 48.1 12.2 34 193-230 3-37 (205)
86 2cjk_A Nuclear polyadenylated 94.3 0.13 4.3E-06 48.6 8.6 35 192-230 85-119 (167)
87 2g4b_A Splicing factor U2AF 65 94.1 0.13 4.6E-06 48.6 8.5 37 191-231 91-127 (172)
88 3q2s_C Cleavage and polyadenyl 94.0 0.092 3.2E-06 53.1 7.3 39 193-233 67-105 (229)
89 3pgw_S U1-70K; protein-RNA com 93.3 0.28 9.7E-06 54.6 10.3 36 192-231 100-135 (437)
90 2ghp_A U4/U6 snRNA-associated 93.2 0.4 1.4E-05 49.9 11.0 59 332-406 81-139 (292)
91 2diu_A KIAA0430 protein; struc 93.2 0.098 3.4E-06 44.9 4.9 43 333-389 47-89 (96)
92 4f02_A Polyadenylate-binding p 92.8 0.26 8.8E-06 48.9 8.3 35 193-231 102-136 (213)
93 1s79_A Lupus LA protein; RRM, 92.5 0.17 5.9E-06 44.2 5.7 42 189-234 6-47 (103)
94 1jmt_A Splicing factor U2AF 35 92.3 0.25 8.7E-06 43.2 6.6 39 330-382 66-104 (104)
95 3s7r_A Heterogeneous nuclear r 92.0 0.2 6.7E-06 41.8 5.3 41 190-234 7-47 (87)
96 3smz_A Protein raver-1, ribonu 91.6 0.36 1.2E-05 50.0 8.1 39 190-231 180-218 (284)
97 2cpd_A Apobec-1 stimulating pr 91.6 0.35 1.2E-05 41.4 6.6 44 190-235 11-54 (99)
98 3pgw_A U1-A; protein-RNA compl 91.5 1.4 4.8E-05 45.4 12.5 35 191-229 6-44 (282)
99 2ywk_A Putative RNA-binding pr 91.4 0.28 9.6E-06 41.6 5.8 40 190-233 12-51 (95)
100 2ytc_A PRE-mRNA-splicing facto 91.2 0.36 1.2E-05 39.9 6.1 39 190-232 8-46 (85)
101 1wex_A Hypothetical protein (r 91.2 0.36 1.2E-05 42.2 6.4 40 190-233 11-50 (104)
102 1sjq_A Polypyrimidine tract-bi 91.1 0.28 9.7E-06 43.0 5.5 39 191-233 13-51 (105)
103 3r27_A HnRNP L, heterogeneous 90.9 0.35 1.2E-05 42.1 5.8 39 190-232 17-55 (100)
104 3ucg_A Polyadenylate-binding p 90.8 0.29 9.9E-06 40.9 5.2 38 193-234 5-42 (89)
105 2err_A Ataxin-2-binding protei 90.8 0.21 7.3E-06 43.9 4.5 42 188-233 23-64 (109)
106 3d2w_A TAR DNA-binding protein 90.2 0.32 1.1E-05 41.0 5.0 39 191-233 8-46 (89)
107 1wf0_A TDP-43, TAR DNA-binding 90.2 0.23 7.9E-06 41.6 4.0 37 193-233 4-40 (88)
108 2dnp_A RNA-binding protein 14; 90.2 0.42 1.4E-05 40.1 5.7 41 191-235 6-46 (90)
109 2cpf_A RNA binding motif prote 90.0 0.32 1.1E-05 41.5 4.8 38 193-234 4-41 (98)
110 2dit_A HIV TAT specific factor 89.9 0.7 2.4E-05 40.7 7.1 47 331-391 63-109 (112)
111 2do0_A HnRNP M, heterogeneous 89.9 0.47 1.6E-05 41.7 6.0 40 190-233 11-50 (114)
112 2dgt_A RNA-binding protein 30; 89.8 0.44 1.5E-05 40.2 5.5 42 190-235 6-47 (92)
113 2cqg_A TDP-43, TAR DNA-binding 89.7 0.55 1.9E-05 40.4 6.2 39 191-233 12-50 (103)
114 2cq1_A PTB-like protein L; RRM 89.6 0.48 1.6E-05 41.2 5.6 40 190-233 11-50 (101)
115 3v4m_A Splicing factor U2AF 65 89.5 0.65 2.2E-05 40.6 6.5 26 330-355 57-82 (105)
116 3s6e_A RNA-binding protein 39; 89.4 0.48 1.6E-05 42.2 5.6 45 311-355 28-78 (114)
117 2dhg_A TRNA selenocysteine ass 89.3 0.5 1.7E-05 40.7 5.6 40 191-233 6-45 (104)
118 1x4d_A Matrin 3; structural ge 89.2 0.38 1.3E-05 41.9 4.7 39 191-233 12-51 (102)
119 2xs2_A Deleted in azoospermia- 89.1 0.5 1.7E-05 40.6 5.5 39 191-233 6-44 (102)
120 2dh8_A DAZ-associated protein 89.1 0.47 1.6E-05 41.1 5.3 40 190-233 12-51 (105)
121 2ad9_A Polypyrimidine tract-bi 89.0 0.47 1.6E-05 42.6 5.2 40 190-233 27-66 (119)
122 1why_A Hypothetical protein ri 88.9 0.56 1.9E-05 40.0 5.5 41 189-233 12-52 (97)
123 1x4e_A RNA binding motif, sing 88.9 0.34 1.2E-05 40.1 4.0 37 193-233 4-40 (85)
124 3ulh_A THO complex subunit 4; 88.9 0.58 2E-05 40.6 5.7 40 190-233 25-64 (107)
125 2rs2_A Musashi-1, RNA-binding 88.8 0.42 1.4E-05 41.9 4.8 40 190-233 21-60 (109)
126 1wg1_A KIAA1579 protein, homol 88.5 0.29 1E-05 41.0 3.4 38 332-383 40-77 (88)
127 2krb_A Eukaryotic translation 88.5 0.45 1.5E-05 39.1 4.5 37 194-232 1-41 (81)
128 2cq4_A RNA binding motif prote 88.3 0.52 1.8E-05 41.5 5.1 38 192-233 23-60 (114)
129 2dgu_A Heterogeneous nuclear r 88.3 0.74 2.5E-05 39.7 6.0 40 192-235 9-48 (103)
130 1x4c_A Splicing factor, argini 88.1 0.66 2.3E-05 40.5 5.6 38 192-233 13-50 (108)
131 2div_A TRNA selenocysteine ass 87.9 0.54 1.8E-05 40.1 4.8 39 192-234 7-46 (99)
132 1uaw_A Mouse-musashi-1; RNP-ty 87.5 0.35 1.2E-05 39.1 3.1 35 195-233 1-35 (77)
133 2cqp_A RNA-binding protein 12; 87.2 0.48 1.6E-05 40.4 4.0 41 331-385 56-96 (98)
134 2dnn_A RNA-binding protein 12; 86.9 0.56 1.9E-05 41.4 4.3 40 189-233 11-50 (109)
135 1x5o_A RNA binding motif, sing 86.1 0.87 3E-05 40.0 5.3 40 190-233 21-60 (114)
136 2e44_A Insulin-like growth fac 86.1 1.1 3.6E-05 38.0 5.6 39 191-233 12-51 (96)
137 1iqt_A AUF1, heterogeneous nuc 86.1 0.44 1.5E-05 38.3 3.0 34 196-233 1-34 (75)
138 2cpy_A RNA-binding protein 12; 85.8 0.61 2.1E-05 41.2 4.0 39 191-233 12-51 (114)
139 2e5j_A Methenyltetrahydrofolat 85.8 1 3.4E-05 38.3 5.3 39 332-384 56-94 (97)
140 3nmr_A Cugbp ELAV-like family 85.4 0.8 2.7E-05 43.1 5.0 37 194-234 3-39 (175)
141 2cjk_A Nuclear polyadenylated 85.1 0.83 2.9E-05 42.7 4.9 37 194-234 3-39 (167)
142 2dgw_A Probable RNA-binding pr 85.1 1 3.5E-05 37.6 5.0 37 192-233 8-44 (91)
143 2jwn_A Embryonic polyadenylate 85.1 0.69 2.4E-05 41.3 4.1 37 193-233 35-71 (124)
144 3beg_B Splicing factor, argini 85.0 0.8 2.7E-05 40.5 4.4 37 193-233 15-51 (115)
145 2jvr_A Nucleolar protein 3; RN 84.7 1 3.5E-05 39.8 5.0 39 332-384 67-105 (111)
146 2a3j_A U1 small nuclear ribonu 84.6 0.72 2.4E-05 41.9 4.0 45 332-390 72-116 (127)
147 2fc9_A NCL protein; structure 84.4 1 3.5E-05 38.5 4.8 39 331-383 52-90 (101)
148 1x5p_A Negative elongation fac 84.4 1.2 4.3E-05 37.7 5.2 39 331-383 48-86 (97)
149 1fj7_A Nucleolin RBD1, protein 84.1 1.5 5.1E-05 37.4 5.7 24 331-355 57-80 (101)
150 2pe8_A Splicing factor 45; RRM 83.8 0.87 3E-05 39.8 4.1 38 331-382 55-92 (105)
151 2dgu_A Heterogeneous nuclear r 83.7 1.3 4.5E-05 38.0 5.2 40 332-385 45-84 (103)
152 1x4b_A Heterogeneous nuclear r 83.6 0.83 2.8E-05 40.3 3.9 38 192-233 25-62 (116)
153 2dha_A FLJ20171 protein; RRM d 83.4 0.69 2.4E-05 41.8 3.3 38 194-233 23-62 (123)
154 1whx_A Hypothetical protein ri 83.1 1.4 4.7E-05 38.7 5.1 36 193-232 9-44 (111)
155 2mss_A Protein (musashi1); RNA 83.1 0.76 2.6E-05 36.9 3.2 34 196-233 1-34 (75)
156 1fjc_A Nucleolin RBD2, protein 83.1 1.2 4.1E-05 37.7 4.5 37 332-382 53-89 (96)
157 1x4f_A Matrin 3; structural ge 83.0 0.91 3.1E-05 40.2 3.8 39 190-232 21-60 (112)
158 2la4_A Nuclear and cytoplasmic 82.8 1.4 4.7E-05 37.7 4.9 36 192-231 25-60 (101)
159 2hvz_A Splicing factor, argini 82.7 1.1 3.9E-05 38.2 4.3 35 195-233 1-35 (101)
160 2e5g_A U6 snRNA-specific termi 82.7 2 6.7E-05 36.2 5.8 37 193-233 7-43 (94)
161 2hzc_A Splicing factor U2AF 65 82.4 1.9 6.7E-05 35.4 5.6 39 193-233 5-52 (87)
162 2m2b_A RNA-binding protein 10; 82.3 1.1 3.6E-05 40.7 4.2 40 190-233 19-60 (131)
163 2e44_A Insulin-like growth fac 82.1 1.9 6.5E-05 36.3 5.5 40 331-384 53-92 (96)
164 2cpx_A Hypothetical protein FL 82.0 1.7 5.7E-05 38.1 5.2 25 331-355 66-90 (115)
165 2kvi_A Nuclear polyadenylated 81.8 1.1 3.8E-05 38.0 3.8 23 333-355 46-68 (96)
166 2hvz_A Splicing factor, argini 81.5 1.7 6E-05 37.0 5.1 25 331-355 36-60 (101)
167 1why_A Hypothetical protein ri 81.4 1.9 6.7E-05 36.4 5.3 24 332-355 53-76 (97)
168 2wbr_A GW182, gawky, LD47780P; 81.4 1.6 5.4E-05 36.9 4.5 36 332-381 43-78 (89)
169 2xnq_A Nuclear polyadenylated 81.2 2.3 7.8E-05 36.2 5.7 41 190-234 18-59 (97)
170 2mss_A Protein (musashi1); RNA 81.0 1 3.5E-05 36.1 3.2 21 330-350 39-59 (75)
171 2kvi_A Nuclear polyadenylated 80.9 1.6 5.4E-05 37.0 4.5 40 191-234 7-47 (96)
172 2cqh_A IGF-II mRNA-binding pro 80.8 1.4 4.7E-05 37.0 4.1 23 332-354 44-66 (93)
173 1whx_A Hypothetical protein ri 80.6 1.2 4.2E-05 39.0 3.8 25 331-355 45-69 (111)
174 2d9o_A DNAJ (HSP40) homolog, s 80.5 1.9 6.4E-05 37.3 4.9 22 330-351 52-73 (100)
175 2cpf_A RNA binding motif prote 80.4 1.6 5.4E-05 37.0 4.4 26 330-355 48-73 (98)
176 2dnl_A Cytoplasmic polyadenyla 80.3 1.5 5.3E-05 38.5 4.4 26 193-220 7-32 (114)
177 2cpd_A Apobec-1 stimulating pr 80.3 2 6.8E-05 36.5 5.0 38 331-382 50-87 (99)
178 2dgt_A RNA-binding protein 30; 80.3 2.3 7.7E-05 35.6 5.3 37 332-382 44-80 (92)
179 2dnp_A RNA-binding protein 14; 80.2 2 6.9E-05 35.8 4.9 38 332-383 43-80 (90)
180 2xnq_A Nuclear polyadenylated 80.2 2 7E-05 36.5 5.0 25 331-355 56-80 (97)
181 1uaw_A Mouse-musashi-1; RNP-ty 80.0 0.92 3.2E-05 36.5 2.6 24 330-353 40-63 (77)
182 3smz_A Protein raver-1, ribonu 79.6 2.9 0.0001 42.9 7.0 60 332-405 57-116 (284)
183 2ywk_A Putative RNA-binding pr 79.3 1.1 3.7E-05 37.7 2.9 26 330-355 55-80 (95)
184 2hgm_A HNRPF protein, heteroge 78.7 2.3 7.9E-05 38.4 5.1 38 191-233 39-78 (126)
185 1wez_A HnRNP H', FTP-3, hetero 78.6 1.4 4.7E-05 38.1 3.4 39 190-233 11-49 (102)
186 1qm9_A Polypyrimidine tract-bi 78.5 1.6 5.3E-05 42.3 4.2 38 193-234 2-40 (198)
187 3ulh_A THO complex subunit 4; 78.2 1.4 4.9E-05 38.0 3.4 26 330-355 68-93 (107)
188 2dgw_A Probable RNA-binding pr 77.9 1.3 4.6E-05 36.9 3.0 24 330-354 48-71 (91)
189 1x4c_A Splicing factor, argini 77.8 2.3 7.9E-05 36.9 4.7 23 333-355 51-73 (108)
190 2db1_A Heterogeneous nuclear r 77.8 1.3 4.4E-05 39.4 3.1 40 192-233 15-55 (118)
191 3nmr_A Cugbp ELAV-like family 77.7 3.2 0.00011 38.8 6.1 40 190-233 91-130 (175)
192 2wbr_A GW182, gawky, LD47780P; 77.7 3.1 0.00011 35.1 5.1 37 192-232 5-41 (89)
193 2bz2_A Negative elongation fac 77.6 2.8 9.6E-05 37.4 5.3 39 331-383 72-110 (121)
194 2lmi_A GRSF-1, G-rich sequence 77.5 0.6 2E-05 40.7 0.7 27 192-220 9-35 (107)
195 2voo_A Lupus LA protein; RNA-b 77.4 2.2 7.4E-05 41.6 4.8 37 193-233 108-144 (193)
196 3ucg_A Polyadenylate-binding p 77.2 1.9 6.3E-05 35.7 3.7 38 330-382 46-83 (89)
197 2lmi_A GRSF-1, G-rich sequence 77.2 1.4 4.8E-05 38.3 3.1 20 331-350 54-73 (107)
198 2ytc_A PRE-mRNA-splicing facto 77.1 1.8 6.2E-05 35.5 3.6 21 332-352 48-68 (85)
199 1fxl_A Paraneoplastic encephal 77.1 3.6 0.00012 38.0 6.2 41 189-233 83-123 (167)
200 2div_A TRNA selenocysteine ass 77.0 1.5 5.1E-05 37.3 3.1 26 330-355 50-75 (99)
201 2err_A Ataxin-2-binding protei 76.9 1.7 5.7E-05 38.0 3.5 37 331-381 68-104 (109)
202 3md3_A Nuclear and cytoplasmic 76.8 3.9 0.00013 37.7 6.3 40 190-233 83-122 (166)
203 2dnl_A Cytoplasmic polyadenyla 76.7 2 6.7E-05 37.8 3.9 23 331-353 51-73 (114)
204 1x4f_A Matrin 3; structural ge 76.7 2.5 8.5E-05 37.4 4.5 46 331-388 61-106 (112)
205 2dhg_A TRNA selenocysteine ass 76.6 2 6.7E-05 36.8 3.8 26 330-355 49-74 (104)
206 2hgn_A Heterogeneous nuclear r 76.4 1.3 4.6E-05 40.8 2.8 37 192-233 44-80 (139)
207 2hgl_A HNRPF protein, heteroge 76.3 1.5 5.1E-05 40.3 3.1 39 192-234 42-83 (136)
208 2hgl_A HNRPF protein, heteroge 76.2 0.6 2.1E-05 43.0 0.4 22 329-350 85-106 (136)
209 1iqt_A AUF1, heterogeneous nuc 75.9 1.2 4E-05 35.6 2.1 22 330-351 39-60 (75)
210 2la4_A Nuclear and cytoplasmic 75.3 1.8 6E-05 37.0 3.1 25 331-355 62-86 (101)
211 3r27_A HnRNP L, heterogeneous 74.8 4.6 0.00016 34.9 5.6 25 331-355 56-80 (100)
212 2cq1_A PTB-like protein L; RRM 74.7 3.6 0.00012 35.5 5.0 23 332-354 51-73 (101)
213 1l3k_A Heterogeneous nuclear r 74.5 3.1 0.00011 39.8 5.1 38 192-233 102-139 (196)
214 2cqp_A RNA-binding protein 12; 74.3 1.4 4.7E-05 37.4 2.2 28 191-220 12-39 (98)
215 2do0_A HnRNP M, heterogeneous 74.2 2.7 9.1E-05 36.7 4.1 26 330-355 54-79 (114)
216 3s7r_A Heterogeneous nuclear r 74.1 1.6 5.4E-05 36.1 2.4 22 330-351 51-72 (87)
217 1x4e_A RNA binding motif, sing 74.0 2.7 9.2E-05 34.4 3.9 26 330-355 45-70 (85)
218 1wex_A Hypothetical protein (r 73.9 4.2 0.00014 35.2 5.2 24 332-355 51-74 (104)
219 2krb_A Eukaryotic translation 73.8 1.7 5.8E-05 35.4 2.6 26 330-355 45-70 (81)
220 1wg1_A KIAA1579 protein, homol 73.4 1.9 6.5E-05 35.8 2.8 33 193-230 4-36 (88)
221 1fje_B Nucleolin RBD12, protei 73.3 6.2 0.00021 36.9 6.8 61 331-406 53-121 (175)
222 2cqg_A TDP-43, TAR DNA-binding 72.6 2.5 8.4E-05 36.2 3.4 22 330-351 55-76 (103)
223 3ue2_A Poly(U)-binding-splicin 72.6 2.2 7.5E-05 38.1 3.1 38 332-383 71-108 (118)
224 1x4d_A Matrin 3; structural ge 72.2 3.9 0.00013 35.4 4.6 24 332-355 52-75 (102)
225 2e5j_A Methenyltetrahydrofolat 72.1 3.6 0.00012 34.8 4.3 30 190-221 15-44 (97)
226 2ad9_A Polypyrimidine tract-bi 71.1 4.3 0.00015 36.2 4.7 23 332-354 67-89 (119)
227 2dnn_A RNA-binding protein 12; 70.9 4.5 0.00015 35.4 4.7 22 329-350 53-74 (109)
228 2rs2_A Musashi-1, RNA-binding 70.7 4.4 0.00015 35.2 4.7 23 330-352 65-87 (109)
229 3egn_A RNA-binding protein 40; 70.5 3 0.0001 38.1 3.7 25 331-355 91-115 (143)
230 2cq2_A Hypothetical protein LO 70.2 4.7 0.00016 35.7 4.7 38 191-232 22-61 (114)
231 1x4b_A Heterogeneous nuclear r 69.9 3.3 0.00011 36.2 3.8 22 330-351 67-88 (116)
232 2fc9_A NCL protein; structure 69.4 4.9 0.00017 34.0 4.6 29 190-220 11-39 (101)
233 2jwn_A Embryonic polyadenylate 69.2 4 0.00014 36.1 4.2 38 330-382 76-113 (124)
234 1sjr_A Polypyrimidine tract-bi 68.9 5.5 0.00019 37.7 5.1 24 332-355 84-107 (164)
235 2cpy_A RNA-binding protein 12; 68.5 2.5 8.7E-05 37.0 2.6 22 330-351 55-76 (114)
236 1fje_B Nucleolin RBD12, protei 68.5 4.4 0.00015 38.0 4.5 39 330-382 134-172 (175)
237 2e5g_A U6 snRNA-specific termi 68.2 2.9 9.9E-05 35.1 2.8 20 334-354 47-66 (94)
238 2cq4_A RNA binding motif prote 68.1 2.6 8.9E-05 36.8 2.6 24 330-354 65-88 (114)
239 2yh0_A Splicing factor U2AF 65 67.9 6.9 0.00024 37.3 5.9 38 192-233 112-149 (198)
240 2jvr_A Nucleolar protein 3; RN 67.5 4.7 0.00016 35.5 4.1 36 193-231 27-62 (111)
241 1s79_A Lupus LA protein; RRM, 67.1 3.5 0.00012 35.6 3.1 21 330-350 50-70 (103)
242 1wez_A HnRNP H', FTP-3, hetero 67.0 2.1 7.2E-05 36.9 1.7 21 330-350 53-73 (102)
243 2db1_A Heterogeneous nuclear r 66.7 2.4 8.2E-05 37.6 2.1 22 329-350 58-79 (118)
244 2dh8_A DAZ-associated protein 66.4 2.8 9.6E-05 35.9 2.4 22 330-351 56-77 (105)
245 2lcw_A RNA-binding protein FUS 69.8 1.2 4.1E-05 39.2 0.0 31 193-227 6-36 (116)
246 2dhx_A Poly (ADP-ribose) polym 65.2 9.1 0.00031 33.1 5.3 39 192-232 6-47 (104)
247 3pgw_A U1-A; protein-RNA compl 65.2 7.1 0.00024 39.9 5.7 38 191-232 204-241 (282)
248 2g4b_A Splicing factor U2AF 65 65.0 12 0.0004 34.7 6.7 25 194-220 4-28 (172)
249 2hzc_A Splicing factor U2AF 65 65.0 4.6 0.00016 33.0 3.4 23 331-354 52-74 (87)
250 3beg_B Splicing factor, argini 64.5 4.6 0.00016 35.5 3.5 23 333-355 52-74 (115)
251 2m2b_A RNA-binding protein 10; 64.3 3.4 0.00011 37.3 2.6 25 330-355 65-89 (131)
252 1x5o_A RNA binding motif, sing 64.3 7.2 0.00024 33.8 4.7 25 331-355 65-89 (114)
253 2cq2_A Hypothetical protein LO 63.7 4.6 0.00016 35.8 3.3 24 332-355 63-86 (114)
254 1wel_A RNA-binding protein 12; 63.4 2.4 8.2E-05 37.8 1.4 26 193-220 24-49 (124)
255 2cpx_A Hypothetical protein FL 63.2 2.2 7.5E-05 37.3 1.1 28 191-220 22-49 (115)
256 2a3j_A U1 small nuclear ribonu 62.8 12 0.0004 33.7 5.9 38 191-232 26-67 (127)
257 1qm9_A Polypyrimidine tract-bi 62.4 10 0.00036 36.2 6.0 24 332-355 41-64 (198)
258 2lcw_A RNA-binding protein FUS 66.3 1.6 5.5E-05 38.4 0.0 26 330-355 55-80 (116)
259 1fjc_A Nucleolin RBD2, protein 61.4 6.5 0.00022 32.9 3.8 29 190-220 12-40 (96)
260 1sjq_A Polypyrimidine tract-bi 60.6 6 0.00021 34.4 3.4 23 332-354 52-74 (105)
261 2cqh_A IGF-II mRNA-binding pro 60.4 7.8 0.00027 32.2 4.1 28 192-221 6-33 (93)
262 1wel_A RNA-binding protein 12; 59.6 3.4 0.00012 36.8 1.7 19 332-350 67-85 (124)
263 2yh0_A Splicing factor U2AF 65 59.6 12 0.00041 35.6 5.8 26 193-220 3-28 (198)
264 3tyt_A Heterogeneous nuclear r 59.4 6.3 0.00022 38.6 3.8 37 193-233 122-160 (205)
265 3v4m_A Splicing factor U2AF 65 58.3 10 0.00034 32.8 4.5 41 193-235 4-52 (105)
266 3ue2_A Poly(U)-binding-splicin 58.1 9.5 0.00033 33.8 4.4 41 193-235 19-62 (118)
267 1wf0_A TDP-43, TAR DNA-binding 58.0 4.4 0.00015 33.4 2.0 18 331-348 41-58 (88)
268 2pe8_A Splicing factor 45; RRM 58.0 14 0.00046 32.0 5.3 40 193-234 7-49 (105)
269 2j8a_A Histone-lysine N-methyl 57.8 8.8 0.0003 34.9 4.0 37 195-235 3-43 (136)
270 2hgn_A Heterogeneous nuclear r 57.6 4.1 0.00014 37.4 1.9 22 329-350 83-104 (139)
271 2e5i_A Heterogeneous nuclear r 57.5 15 0.00053 32.8 5.7 23 333-355 62-85 (124)
272 2dit_A HIV TAT specific factor 56.1 7.4 0.00025 33.9 3.3 40 190-231 11-59 (112)
273 2dnr_A Synaptojanin-1; RRM dom 54.3 9 0.00031 32.4 3.3 35 332-381 49-83 (91)
274 3zzy_A Polypyrimidine tract-bi 54.1 14 0.00049 33.4 4.9 22 334-355 68-89 (130)
275 2ghp_A U4/U6 snRNA-associated 53.9 11 0.00039 38.5 4.8 39 192-234 208-247 (292)
276 3u1l_A PRE-mRNA-splicing facto 53.7 11 0.00038 38.0 4.5 24 332-355 179-202 (240)
277 3sde_A Paraspeckle component 1 53.4 13 0.00043 37.7 5.0 36 194-233 96-131 (261)
278 1sjr_A Polypyrimidine tract-bi 52.7 15 0.00052 34.6 5.0 36 194-233 46-81 (164)
279 2hgm_A HNRPF protein, heteroge 52.6 5.7 0.0002 35.8 2.0 23 329-351 81-103 (126)
280 1fj7_A Nucleolin RBD1, protein 52.4 15 0.00053 30.8 4.7 27 192-220 15-41 (101)
281 2adc_A Polypyrimidine tract-bi 52.3 15 0.00051 36.3 5.3 37 192-232 149-186 (229)
282 3u1l_A PRE-mRNA-splicing facto 51.9 10 0.00035 38.2 3.9 40 192-233 132-178 (240)
283 3zzy_A Polypyrimidine tract-bi 51.0 16 0.00055 33.0 4.7 35 195-233 29-63 (130)
284 3d2w_A TAR DNA-binding protein 50.5 9.7 0.00033 31.6 3.0 17 331-347 47-63 (89)
285 2voo_A Lupus LA protein; RNA-b 48.1 12 0.00041 36.2 3.6 23 330-352 148-170 (193)
286 1x5p_A Negative elongation fac 46.9 31 0.0011 28.7 5.7 35 191-231 12-46 (97)
287 2dha_A FLJ20171 protein; RRM d 46.7 5.6 0.00019 35.6 0.9 23 329-351 65-87 (123)
288 2e5i_A Heterogeneous nuclear r 46.7 22 0.00075 31.8 4.9 37 193-233 22-60 (124)
289 2diu_A KIAA0430 protein; struc 43.6 29 0.00099 29.6 4.8 33 193-228 7-44 (96)
290 3dxb_A Thioredoxin N-terminall 43.1 17 0.00059 35.6 4.0 39 330-382 173-211 (222)
291 3egn_A RNA-binding protein 40; 38.6 24 0.00084 31.8 4.0 30 190-221 41-70 (143)
292 1owx_A Lupus LA protein, SS-B, 35.1 36 0.0012 30.3 4.3 41 192-235 16-56 (121)
293 2kn4_A Immunoglobulin G-bindin 33.7 66 0.0023 29.2 6.2 77 330-406 11-92 (158)
294 2xs2_A Deleted in azoospermia- 33.6 6.3 0.00022 33.4 -0.9 21 330-350 48-68 (102)
295 1ufw_A Synaptojanin 2; RNP dom 32.6 33 0.0011 29.1 3.4 19 332-350 58-76 (95)
296 3tht_A Alkylated DNA repair pr 32.0 27 0.00092 37.2 3.4 25 333-357 57-81 (345)
297 2kxc_B ESPF-like protein; IRTK 25.8 29 0.00098 25.2 1.5 12 8-19 32-43 (48)
298 2v8f_C MDIA1, profilin IIA; al 24.7 41 0.0014 20.8 1.8 8 3-10 5-12 (26)
299 3tht_A Alkylated DNA repair pr 23.7 72 0.0025 33.8 5.0 41 190-232 14-54 (345)
300 3s6e_A RNA-binding protein 39; 22.4 81 0.0028 27.5 4.3 40 193-234 6-53 (114)
301 2rdd_B UPF0092 membrane protei 21.2 39 0.0013 23.3 1.5 18 675-692 4-21 (37)
302 3twe_A Alpha4H; unknown functi 20.8 1.5E+02 0.0053 18.0 3.9 15 239-253 5-19 (27)
No 1
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=0.0037 Score=53.71 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=28.3
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
..+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 4 ~~~~l~v~nlp~~~t--~~~l~~~f~~~--G~v~~v~i~ 38 (95)
T 2dnz_A 4 GSSGLYVGSLHFNIT--EDMLRGIFEPF--GKIDNIVLM 38 (95)
T ss_dssp CCCEEEEESCCTTCC--HHHHHHHHTTT--SCEEEEEEE
T ss_pred CCcEEEEeCCCCCCC--HHHHHHHHHhc--CCEeEEEEe
Confidence 479999999999875 68999999985 567777644
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.06 E-value=0.0021 Score=56.19 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=29.1
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeec
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~ 232 (807)
..+|.|.|||.+.. +++|+++|+++ |.|.+|.+.+
T Consensus 19 gt~lfV~nLp~~~t--e~~L~~~F~~~--G~I~~v~i~~ 53 (99)
T 4fxv_A 19 GTNLIVNYLPQNMT--QDELRSLFSSI--GEVESAKLIR 53 (99)
T ss_dssp CSEEEEESCCTTCC--HHHHHHHHHTT--SCEEEEEEEE
T ss_pred CCEEEEeCCCCCCC--HHHHHHHHHhc--CCEEEeEeee
Confidence 57899999999985 68999999986 5688887654
No 3
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.01 E-value=0.0013 Score=56.46 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.3
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhC
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKY 221 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~ 221 (807)
++||+|+|||.+.. |++|+++|+++.
T Consensus 1 S~~i~v~nLp~~~t--e~~l~~~F~~~G 26 (91)
T 2lxi_A 1 SNIVMLRMLPQAAT--EDDIRGQLQSHG 26 (91)
T ss_dssp CCEEEEETCCSSCC--HHHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCC--HHHHHHHHHHhC
Confidence 47999999999985 789999998763
No 4
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.98 E-value=0.0076 Score=52.20 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=28.1
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEe
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIM 230 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v 230 (807)
...+||.|.|||.+.. +++|+++|+++ |.|.+|.+
T Consensus 6 ~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~v~i 40 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSS--EEDLEKLFSAY--GPLSELHY 40 (99)
T ss_dssp CSCEEEEEECCCTTCC--HHHHHHHHHTT--SCEEEEEC
T ss_pred CCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCEeEEEE
Confidence 3479999999999875 68999999975 45776653
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=96.94 E-value=0.0033 Score=56.13 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=30.7
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
..+||.|.|+|.+.. ++.|+++|+++ |.|.+|.+.+|
T Consensus 5 p~~~lfV~nL~~~~t--e~~L~~~F~~~--G~i~~v~i~~d 41 (110)
T 3s8s_A 5 PLKEVTFARLNDNVR--ETFLKDMCRKY--GEVEEVEILLH 41 (110)
T ss_dssp CCCEEEEESCCTTCC--HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCcEEEEECCCCCCC--HHHHHHHHHhc--CCeeEEEEEEC
Confidence 479999999999884 68999999986 67888876654
No 6
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.87 E-value=0.0077 Score=52.79 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=30.7
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
......+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~ 48 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVS--EPLLWELFLQA--GPVVNTHMP 48 (105)
T ss_dssp CCCCTTTEEEEECCCTTCC--HHHHHHHHHTT--SCEEEEECC
T ss_pred ccCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEE
Confidence 3445689999999999885 68999999986 567777543
No 7
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.84 E-value=0.01 Score=52.18 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=31.1
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
......+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~ 48 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQAN--QREIRELFSTF--GELKTVRLP 48 (107)
T ss_dssp CCSSCCCCEEEESCCTTCC--HHHHHHHHHTT--SCEEEEECC
T ss_pred ccCCCCCEEEEeCCCCcCC--HHHHHHHHHcc--CCeEEEEEe
Confidence 3456689999999999885 68999999985 567777644
No 8
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.82 E-value=0.011 Score=51.12 Aligned_cols=37 Identities=35% Similarity=0.557 Sum_probs=29.6
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 7 ~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~ 43 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCG--ETELREYFKKF--GVVTEVVMI 43 (99)
T ss_dssp CSSCCEEEEESCCSSCC--HHHHHHHHSSS--SCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEE
Confidence 34579999999999875 68999999985 567777644
No 9
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.82 E-value=0.013 Score=51.05 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=29.8
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
.....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~ 48 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVT--EVLILQLFSQI--GPCKSCKMI 48 (103)
T ss_dssp CSCCCCEEEEESCCTTCC--HHHHHHHHHHH--SCEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCC--HHHHHHHHHhc--CCEeEEEEE
Confidence 345689999999999884 68999999986 457766544
No 10
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=96.81 E-value=0.0069 Score=52.22 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=27.5
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
++||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 2 ~~~l~V~nLp~~~t--~~~l~~~F~~~--G~i~~v~i~ 35 (96)
T 2x1f_A 2 SRVVYLGSIPYDQT--EEQILDLCSNV--GPVINLKMM 35 (96)
T ss_dssp CSEEEEESCCTTCC--HHHHHHHHHTT--SCEEEEECC
T ss_pred CcEEEEECCCCCCC--HHHHHHHHHhc--CCEEEEEEE
Confidence 68999999999885 68999999986 567776543
No 11
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=96.79 E-value=0.0055 Score=51.34 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=28.5
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
..+||.|.|||.+.. +++|+++|+++ |.|.++.+.
T Consensus 6 ~~~~l~V~nl~~~~~--~~~l~~~f~~~--G~i~~v~i~ 40 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVD--DKVLHAAFIPF--GDITDIQIP 40 (85)
T ss_dssp CSSEEEEECCCTTCC--HHHHHHHHGGG--SCEEEEECC
T ss_pred CCCEEEEECCCCCCC--HHHHHHHHhcc--CCEEEEEEE
Confidence 479999999999875 68999999986 567777643
No 12
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.78 E-value=0.015 Score=50.63 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=29.8
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEe
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIM 230 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v 230 (807)
......+||.|.|||.+.. +++|+++|+++ |.|.+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t--~~~l~~~f~~~--G~v~~v~i 47 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFR--DPDLRQMFGQF--GKILDVEI 47 (103)
T ss_dssp CCSCCCCEEEEESCCTTCC--HHHHHHHGGGT--SCEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEE
Confidence 3445689999999999875 68999999985 55776654
No 13
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.77 E-value=0.0069 Score=51.91 Aligned_cols=39 Identities=23% Similarity=0.191 Sum_probs=31.1
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
......+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t--~~~l~~~f~~~--G~v~~v~i~ 48 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTT--ERDLREVFSKY--GPIADVSIV 48 (95)
T ss_dssp CSCCGGGCEEEESCCSSCC--HHHHHHHHHTT--SCEEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCC--HHHHHHHHHhc--CCeeEEEEE
Confidence 4456689999999999875 68999999985 567777654
No 14
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.75 E-value=0.01 Score=51.45 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=30.5
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
......+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~ 50 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCT--KEELEEICKAH--GTVKDLRLV 50 (100)
T ss_dssp SSCCCCSCEEEESCCTTCC--HHHHHHHHTTT--SCEEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCC--HHHHHHHHHhC--CCeEEEEEE
Confidence 3455689999999999885 68999999975 457776643
No 15
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.75 E-value=0.0095 Score=50.98 Aligned_cols=38 Identities=32% Similarity=0.306 Sum_probs=29.8
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
.....++|.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 12 ~~~~~~~l~V~nlp~~~t--~~~l~~~f~~~--G~v~~v~i~ 49 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLT--NNDLYRIFSKY--GKVVKVTIM 49 (94)
T ss_dssp CCCCTTSEEEESCCTTSC--HHHHHHHTTTT--SCEEEEEEC
T ss_pred CCCCCCEEEEECCCCCCC--HHHHHHHHHhc--CCeEEEEEE
Confidence 345689999999999885 68999999875 457776543
No 16
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=96.72 E-value=0.011 Score=52.84 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=31.0
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
......+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~ 48 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEIT--TEDIKAAFAPF--GRISDARVV 48 (115)
T ss_dssp CCSTTCEEEEEESCCTTCC--HHHHHHHHGGG--SCEEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEE
Confidence 3445689999999999885 68999999986 567777654
No 17
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=96.72 E-value=0.0099 Score=56.23 Aligned_cols=60 Identities=25% Similarity=0.314 Sum_probs=40.4
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCCC------CeeeCCcccCcchhHHHHHH
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLAT------DIYWNHLGLTKLSLRLRRVL 405 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P~------DIiW~NL~~~~~~r~~R~~~ 405 (807)
.|.|||+|.+..+|+.|.+.+..... ++..+.++.|.+.. .+.-.||..+..+..++.++
T Consensus 44 ~g~afV~f~~~~~A~~a~~~l~~~~~--------------~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 109 (167)
T 1fxl_A 44 LGYGFVNYIDPKDAEKAINTLNGLRL--------------QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 109 (167)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEE--------------TTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHH
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCcc--------------CCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHH
Confidence 47999999999999999997765321 33445566664332 36677777666665555543
No 18
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.71 E-value=0.0078 Score=52.45 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=28.1
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEe
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIM 230 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v 230 (807)
....+||.|.|||.+.. +++|+++|+++ |.|.+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t--~~~l~~~f~~~--G~i~~v~i 44 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTN--EQSLEQVFSKY--GQISEVVV 44 (102)
T ss_dssp CCCCSEEEEESCCTTCC--HHHHHHHHHHH--SCCCEEEE
T ss_pred CCCCCEEEEECCCCCCC--HHHHHHHHHhc--CCeEEEEE
Confidence 34589999999999875 68999999876 44666554
No 19
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=96.69 E-value=0.0051 Score=51.89 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=28.5
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
...+||.|.|||.+.. +++|+++|+++ |.|.++.+.
T Consensus 2 ~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~~~i~ 37 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVT--KDHIMEIFSTY--GKIKMIDMP 37 (88)
T ss_dssp CCCCEEEEECCCTTCC--HHHHHHHHHTT--SCEEEEECC
T ss_pred CCCCEEEEeCCCCCCC--HHHHHHHHHhC--CCEEEEEEE
Confidence 3478999999999885 68999999975 567776543
No 20
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.67 E-value=0.0072 Score=53.59 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=30.2
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
.....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 22 ~~~~~~~l~V~nLp~~~t--e~~l~~~F~~~--G~i~~v~i~ 59 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNIT--EDMLRGIFEPF--GRIESIQLM 59 (108)
T ss_dssp SCSSCEEEEEECCCSSCC--HHHHHHHHTTT--SCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEE
Confidence 345689999999999874 68999999875 567777654
No 21
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=96.66 E-value=0.0069 Score=51.00 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=28.2
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
..+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 5 ~~~~l~v~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~ 39 (87)
T 3bs9_A 5 SHFHVFVGDLSPEIT--TAAIAAAFAPF--GRISDARVV 39 (87)
T ss_dssp -CEEEEEESCCTTCC--HHHHHHHHGGG--SCEEEEEEE
T ss_pred CceEEEEeCCCCCCC--HHHHHHHHHhc--CCEeEEEEE
Confidence 379999999999874 68999999986 567777654
No 22
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.61 E-value=0.011 Score=51.80 Aligned_cols=39 Identities=13% Similarity=0.265 Sum_probs=31.2
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
......+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 18 ~~~~~~~~l~V~nlp~~~t--~~~l~~~f~~~--G~i~~v~i~ 56 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEAT--EEDIHDKFAEY--GEIKNIHLN 56 (106)
T ss_dssp CCBTTBEEEEEECCCTTCC--HHHHHHHHGGG--SCEEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCC--HHHHHHHHhcc--CCeEEEEEE
Confidence 3455689999999999885 68999999986 568777654
No 23
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.60 E-value=0.0084 Score=52.37 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=30.7
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
......+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t--~~~l~~~f~~~--G~i~~v~i~ 48 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTR--ETDLQELFRPF--GSISRIYLA 48 (103)
T ss_dssp CCCSSSEEEEEESCCTTCC--HHHHHTTSTTT--CCEEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCC--HHHHHHHHHhC--CCeEEEEEe
Confidence 3455689999999999874 68999999875 567777644
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=96.56 E-value=0.0079 Score=53.94 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=28.1
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
++.+|.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 4 ~~~~lfV~nLp~~~t--e~~L~~~F~~~--G~v~~v~i~ 38 (115)
T 4f25_A 4 GSGNIFIKNLDKSID--NKALYDTFSAF--GNILSCKVV 38 (115)
T ss_dssp -CCEEEEESCCTTCC--HHHHHHHHGGG--SCEEEEEEE
T ss_pred CCCEEEECCCCCCCC--HHHHHHHHhcc--CCEEEEEEe
Confidence 357899999999874 68999999986 568877654
No 25
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.56 E-value=0.017 Score=50.54 Aligned_cols=38 Identities=16% Similarity=0.451 Sum_probs=29.5
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEe
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIM 230 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v 230 (807)
......+||.|.|||.+.. +++|+++|+++ |.|.+|.+
T Consensus 8 ~~~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~v~i 45 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLD--EKDLKPLFEEF--GKIYELTV 45 (106)
T ss_dssp CCCTTCEEEEEESCCTTCC--HHHHHHHHHHH--SCCCEEEC
T ss_pred CCCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeeEEEE
Confidence 3445689999999999874 68999999886 45666653
No 26
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.55 E-value=0.014 Score=52.13 Aligned_cols=39 Identities=23% Similarity=0.406 Sum_probs=30.6
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
......+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 12 ~~~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~ 50 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTT--DASLRKYFEGF--GDIEEAVVI 50 (116)
T ss_dssp CCSCSSSEEEEECCCSSCC--HHHHHHHHHTT--SCEEEEEES
T ss_pred cCCCCCCEEEEeCCCCCCC--HHHHHHHHHhC--CCeeEEEEE
Confidence 3445689999999999874 68999999975 567777643
No 27
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.55 E-value=0.019 Score=50.69 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=30.1
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
.....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t--~~~l~~~F~~~--G~i~~v~i~ 48 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSE--EEALGEVLQQF--GDLKYVRVV 48 (111)
T ss_dssp CCCCCCCEEEESCCTTCC--HHHHHHHHHTT--SCEEEEECC
T ss_pred cCCCCCEEEEECCCCCCC--HHHHHHHHHhc--CCeEEEEEE
Confidence 344589999999999874 68999999975 567777644
No 28
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.54 E-value=0.011 Score=50.43 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=27.6
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEe
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIM 230 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v 230 (807)
...+||.|.|||.+.. +++|+++|+++ |.|.+|.+
T Consensus 6 ~~~~~l~V~nlp~~~t--~~~l~~~f~~~--G~v~~~~i 40 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFT--WKMLKDKFNEC--GHVLYADI 40 (92)
T ss_dssp SSCCEEEECSCCTTCC--HHHHHHHHHTT--SCEEEEEE
T ss_pred CCCcEEEEeCCCCCCC--HHHHHHHHHhc--CCEEEEEE
Confidence 3479999999999875 68999999875 45666653
No 29
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=96.54 E-value=0.015 Score=51.31 Aligned_cols=39 Identities=13% Similarity=0.231 Sum_probs=30.9
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
+.....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 21 ~~~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~ 59 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQ--EDEIQEKFCDY--GEIKNIHLN 59 (110)
T ss_dssp CCBTTBEEEEEESCCTTCC--HHHHHHHHGGG--SCEEEEECC
T ss_pred CCCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCEEEEEEE
Confidence 4456789999999999875 68999999986 567777643
No 30
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=96.53 E-value=0.013 Score=48.80 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=27.9
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeec
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~ 232 (807)
.+||.|.|||.+.. +++|+++|+++ |.|.++.+.+
T Consensus 1 t~~l~V~nlp~~~t--~~~l~~~f~~~--G~i~~~~i~~ 35 (83)
T 3md1_A 1 TFNLFVGDLNVNVD--DETLRNAFKDF--PSYLSGHVMW 35 (83)
T ss_dssp CEEEEEECCCTTCC--HHHHHHHHTTS--TTEEEEEEEE
T ss_pred CeEEEEeCCCCCCC--HHHHHHHHHhc--CCeeEEEEEE
Confidence 37999999999875 68999999875 5677776553
No 31
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.51 E-value=0.0073 Score=51.91 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=29.3
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCC
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPL 383 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~ 383 (807)
..|.|||+|++..+|+.|++.+.... +++..+.|+.|-+
T Consensus 47 ~~g~afV~f~~~~~A~~A~~~l~g~~--------------~~g~~l~v~~a~~ 85 (96)
T 1x5t_A 47 SKGYAFINFASFDASDAAIEAMNGQY--------------LCNRPITVSYAFK 85 (96)
T ss_dssp CCSEEEEEBSSHHHHHHHHHTTTTCE--------------ETTEECEEEESCC
T ss_pred cCeEEEEEECCHHHHHHHHHHcCCCE--------------ECCEEEEEEEecc
Confidence 35899999999999999999776542 1445567777743
No 32
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.50 E-value=0.014 Score=50.97 Aligned_cols=38 Identities=11% Similarity=0.196 Sum_probs=29.6
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
.....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~ 48 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGID--DERLRKAFSPF--GTITSAKVM 48 (103)
T ss_dssp CCSSCCCEEEECCCTTCC--HHHHHHTTTTT--SCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCEEEEEEE
Confidence 345689999999999885 68999999875 457766543
No 33
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.50 E-value=0.011 Score=51.55 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=27.5
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEE
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVI 229 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~ 229 (807)
.....++|.|.|||.+.. +++|+++|+++ |.|.+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t--~~~l~~~f~~~--G~i~~v~ 43 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVD--DKVLHAAFIPF--GDITDIQ 43 (102)
T ss_dssp SCCCCSCEEEESCCSSCC--HHHHHHHHTTT--SCCCCEE
T ss_pred cCCCCCEEEEeCCCCCCC--HHHHHHHhhcc--CCEEEEE
Confidence 344689999999999875 68999999875 4455554
No 34
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.48 E-value=0.014 Score=50.93 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=30.0
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
.....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 9 ~~~~~~~l~V~nLp~~~t--~~~l~~~f~~~--G~i~~v~i~ 46 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTS--PDSLRRVFEKY--GRVGDVYIP 46 (103)
T ss_dssp CCSCCCEEEEESCCTTCC--HHHHHHHHTTT--SCEEEEECC
T ss_pred CCCCCeEEEEeCCCCCCC--HHHHHHHHHhc--CCEEEEEEE
Confidence 344589999999999875 68999999986 567777643
No 35
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.47 E-value=0.024 Score=49.51 Aligned_cols=37 Identities=19% Similarity=0.415 Sum_probs=29.7
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
.....+||.|.|||.+.. +++|+++|+++ | |.+|.+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G-i~~v~i~ 47 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVT--EESIKEFFRGL--N-ISAVRLP 47 (104)
T ss_dssp CSSSCEEEEEESCCSSCC--HHHHHHHTTTS--C-EEEEECC
T ss_pred CCCCCCEEEEeCCCCcCC--HHHHHHHHHHC--C-ceEEEEe
Confidence 344679999999999875 68999999975 5 8877654
No 36
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=96.45 E-value=0.0053 Score=53.21 Aligned_cols=28 Identities=7% Similarity=-0.028 Sum_probs=23.7
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhC
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKY 221 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~ 221 (807)
....||+|.|||.+.. +++|+++|+++.
T Consensus 7 ~~m~tlfV~nL~~~~t--ee~L~~~F~~~G 34 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTV--VDSIMTALSPYA 34 (95)
T ss_dssp CCCCEEEEESCCTTCC--HHHHHHHSTTTC
T ss_pred CccCEEEEeCCCCcCC--HHHHHHHHHhhC
Confidence 4479999999999885 689999998753
No 37
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=96.40 E-value=0.01 Score=53.05 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=28.9
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 22 ~~~~~~l~V~nLp~~~t--~~~l~~~F~~~--G~i~~v~i~ 58 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFG--DQDLLQMFMPF--GNVVSAKVF 58 (115)
T ss_dssp CSTTCCEEEESCCSSCC--HHHHHHHHGGG--SCCSEEEEE
T ss_pred CCCCcEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEE
Confidence 34579999999999885 68999999976 456666543
No 38
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=96.40 E-value=0.0048 Score=52.64 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=27.3
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCCCC
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATD 386 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P~D 386 (807)
.|.|||+|++..+|+.|.+.+.... +++..+.|+.|.+|.+
T Consensus 45 kG~afV~f~~~~~a~~Ai~~l~g~~--------------~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 45 KGFALVGVGSEASSKKLMDLLPKRE--------------LHGQNPVVTPSNKLEH 85 (90)
T ss_dssp EEEEEECC-CHHHHHHHHHHGGGSC--------------SSSCCCEECCC-----
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCe--------------eCCEEEEEEECCCCcc
Confidence 4899999999999999999876642 2455667777765543
No 39
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.00095 Score=63.44 Aligned_cols=36 Identities=25% Similarity=0.469 Sum_probs=31.4
Q ss_pred eeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 195 FTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 195 rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
|||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|-
T Consensus 1 R~l~V~nlp~~~t--~~~l~~~f~~~--G~i~~v~i~~~~ 36 (166)
T 3md3_A 1 RVLYVGNLDKAIT--EDILKQYFQVG--GPIANIKIMIDK 36 (166)
T ss_dssp CEEEEEEEETTCC--HHHHHHHHGGG--SCEEEEEEECCC
T ss_pred CEEEECCCCCcCC--HHHHHHHHHhc--CCeEEEEEEECC
Confidence 7999999999885 68999999986 579999998775
No 40
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.35 E-value=0.023 Score=49.62 Aligned_cols=37 Identities=19% Similarity=0.066 Sum_probs=29.2
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 12 ~~~~~~l~v~nLp~~~t--~~~l~~~F~~~--G~i~~v~i~ 48 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQS--EEDVLRLFQPF--GVIDECTVL 48 (105)
T ss_dssp CCCCCEEEEESCCTTCC--HHHHHHHHTTT--SCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEE
Confidence 34589999999999885 68999999975 457776543
No 41
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.35 E-value=0.022 Score=52.53 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=29.6
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 60 ~~~~~~l~v~nlp~~~~--~~~l~~~f~~~--G~i~~v~i~ 96 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVD--DKVLHAAFIPF--GDITDIQIP 96 (140)
T ss_dssp CSSCCEEEEECCCTTCC--HHHHHHHHGGG--SCEEEEECC
T ss_pred CCCCcEEEEEeCCCCCC--HHHHHHHHHhc--CCEEEEEEe
Confidence 44689999999999875 68999999986 567776543
No 42
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=96.34 E-value=0.019 Score=54.35 Aligned_cols=60 Identities=23% Similarity=0.298 Sum_probs=40.6
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCC------CCCCeeeCCcccCcchhHHHHHH
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAP------LATDIYWNHLGLTKLSLRLRRVL 405 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP------~P~DIiW~NL~~~~~~r~~R~~~ 405 (807)
.|.|||+|.+..+|+.|.+.+....- ++..+.++.|. +..-|.-.||.....+..++..+
T Consensus 45 ~g~afV~f~~~~~A~~a~~~l~~~~~--------------~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 110 (168)
T 1b7f_A 45 YGYAFVDFTSEMDSQRAIKVLNGITV--------------RNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIF 110 (168)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEE--------------TTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHH
T ss_pred ceEEEEEECCHHHHHHHHHhcCCCEe--------------CCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhh
Confidence 48999999999999999987654321 23344555553 23446778887776666666543
No 43
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.30 E-value=0.023 Score=51.54 Aligned_cols=39 Identities=13% Similarity=0.265 Sum_probs=30.6
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
......+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 17 ~~~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~ 55 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEAT--EEDIHDKFAEY--GEIKNIHLN 55 (126)
T ss_dssp CCCSSSEEEEEESCCTTCC--HHHHHHHHHTT--SCEEEEECC
T ss_pred CCCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEE
Confidence 3455689999999999874 68999999975 567777644
No 44
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=96.27 E-value=0.02 Score=51.43 Aligned_cols=32 Identities=16% Similarity=0.369 Sum_probs=25.7
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEE
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVI 229 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~ 229 (807)
.+||.|.|||.+.. +++|+++|+++ |.|.+|.
T Consensus 7 ~~~l~V~nLp~~~t--~~~l~~~F~~~--G~i~~v~ 38 (116)
T 2fy1_A 7 PGKLFIGGLNRETN--EKMLKAVFGKH--GPISEVL 38 (116)
T ss_dssp CCEEEEECCTTTCC--HHHHHHHHHTS--SCCSEEE
T ss_pred CCEEEEeCCCCCCC--HHHHHHHHHhc--CCEEEEE
Confidence 69999999999874 68999999875 4455554
No 45
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=96.25 E-value=0.016 Score=51.94 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=29.3
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 37 ~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~~~i~ 73 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFT--DTDLASTFLPF--GNVISAKVF 73 (118)
T ss_dssp CCCSEEEEEECSCTTCC--HHHHHHHTTTS--CEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCEEEEEEE
Confidence 34579999999999874 68999999975 567777543
No 46
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=96.24 E-value=0.019 Score=54.39 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=29.9
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeec
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~ 232 (807)
...+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+
T Consensus 37 ~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~~ 73 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTT--EEQIYELFSKS--GDIKKIIMGL 73 (156)
T ss_dssp TTCCEEEEESCCTTCC--HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEEe
Confidence 4579999999999874 68999999986 4688776543
No 47
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.17 E-value=0.026 Score=49.21 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=29.8
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeec
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~ 232 (807)
....+||.|.|||.+.. +++|+++|+++ | |.+|.+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t--~~~l~~~F~~~--g-i~~v~i~~ 48 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTV--QGDIDAIFKDL--S-IRSVRLVR 48 (103)
T ss_dssp SSSCEEEEEESCCTTCC--HHHHHHHTTTS--C-EEEEEEEE
T ss_pred CCCCeEEEEeCCCCCCC--HHHHHHHHHhC--C-ceEEEEee
Confidence 34589999999999885 68999999985 4 88776553
No 48
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=96.17 E-value=0.021 Score=49.42 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=27.2
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEE
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYK 227 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~ 227 (807)
......++|.|.|||.+.. +++|+++|+++ |.|.+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t--~~~l~~~F~~~--G~i~~ 42 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVT--IESVADYFKQI--GIIKT 42 (99)
T ss_dssp CSCCCCSEEEEECCCSSCC--HHHHHHHHTTT--SCBCE
T ss_pred CCCCCCCEEEEeCCCCCCC--HHHHHHHHHHh--CCEee
Confidence 3455689999999999875 68999999875 34443
No 49
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.16 E-value=0.027 Score=56.17 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=29.8
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeec
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~ 232 (807)
+...+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+
T Consensus 12 ~~p~~tlfVgnLp~~~t--e~~L~~~F~~~--G~I~~v~i~~ 49 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVT--EAMLYEKFSPA--GPILSIRVCR 49 (213)
T ss_dssp ---CCEEEEESCCTTCC--HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC--HHHHHHHHHhh--CCEEEEEEec
Confidence 34568999999999884 78999999986 5688887654
No 50
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.15 E-value=0.045 Score=48.16 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=28.5
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEE
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVI 229 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~ 229 (807)
.....+||.|.|||.+.. +++|+++|+++ |.|.+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t--~~~l~~~F~~~--G~v~~~~ 53 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIR--TKDIEDVFYKY--GAIRDID 53 (109)
T ss_dssp CCCCSSEEEEESCCTTCC--HHHHHHHHGGG--SCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEE
Confidence 345679999999999884 68999999986 4566654
No 51
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.14 E-value=0.025 Score=51.85 Aligned_cols=38 Identities=21% Similarity=0.175 Sum_probs=30.3
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
.....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 42 ~~~~~~~l~V~nLp~~~t--e~~L~~~F~~~--G~I~~v~i~ 79 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTT--ERDLREVFSKY--GPIADVSIV 79 (129)
T ss_dssp CCCCSSCBCEETCTTSCC--HHHHHHHHTTT--SCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEE
Confidence 445689999999999875 68999999975 567777654
No 52
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.12 E-value=0.03 Score=48.99 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=26.6
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEE
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYK 227 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~ 227 (807)
.....++|.|.|||.+.. +++|+++|+++ |.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t--e~~l~~~F~~~--G~v~~ 44 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCS--KEEIVQFFSGL--EIVPN 44 (104)
T ss_dssp SCSCCCEEEEESCCTTCC--HHHHHHHTTTC--CEEEE
T ss_pred CCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCcce
Confidence 345689999999999885 68999999874 44544
No 53
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.10 E-value=0.044 Score=46.41 Aligned_cols=33 Identities=18% Similarity=0.459 Sum_probs=24.8
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEE
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKV 228 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V 228 (807)
...+||.|.|||.+.. +++|+++|+++ |.|.+|
T Consensus 6 ~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~v 38 (90)
T 2dnq_A 6 SGMVKLFIGNLPREAT--EQEIRSLFEQY--GKVLEC 38 (90)
T ss_dssp SCCEEEEEESCCSSCC--HHHHHHHHHTS--SCEEEE
T ss_pred CCCeEEEEeCCCCCCC--HHHHHHHHHhC--CCEEEE
Confidence 3479999999999875 67899999764 334444
No 54
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.07 E-value=0.021 Score=49.39 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=29.0
Q ss_pred CeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCC
Q 044501 333 GVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLA 384 (807)
Q Consensus 333 ~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P 384 (807)
+.|||+|++..+|..|.+.+.... +++..++|+.|-.+
T Consensus 52 g~afV~f~~~~~a~~a~~~l~g~~--------------~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 52 GFGFIRLETRTLAEIAKVELDNMP--------------LRGKQLRVRFACHS 89 (99)
T ss_dssp TEEEEECSSSHHHHHHHHHHTTCC--------------BTTBCCEEEESSCC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCE--------------eCCceEEEEEcCCC
Confidence 689999999999999998776542 14556778888543
No 55
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.07 E-value=0.036 Score=50.15 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=27.0
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEE
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVI 229 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~ 229 (807)
....+||.|.|||.+.. +++|+++|+++ |.|.+|.
T Consensus 32 ~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~v~~v~ 66 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVS--DADIQELFAEF--GTLKKAA 66 (124)
T ss_dssp CSSCEEEEEESCCSSCC--HHHHHHHHHTT--SCCSEEE
T ss_pred CCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeeEEE
Confidence 34579999999999875 68999999875 4455554
No 56
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.05 E-value=0.012 Score=51.20 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=27.2
Q ss_pred ceeEEEecCCC------CCCCCHHHHHHHHhhhCCCcEEEEEeec
Q 044501 194 IFTIMVQGLPK------SLGVDKTIVEEYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 194 ~rTVlV~~IP~------~~~~d~~~L~~~F~~~~pg~V~~V~v~~ 232 (807)
++||.|.|||. +.. ++.|+++|+++ |.|.+|.+.+
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~--~~~L~~~F~~~--G~i~~v~i~~ 46 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVL--KKALTSLFSKA--GKVVNMEFPI 46 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHH--HHHHHHHHHTT--SCEEEEECCE
T ss_pred CcEEEEeCCCcCChHHHHHH--HHHHHHHHHhc--CCEeEEEEEE
Confidence 68999999998 553 57899999875 5677776543
No 57
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.04 E-value=0.035 Score=48.91 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=26.4
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEE
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVI 229 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~ 229 (807)
...+||.|.|||.+.. +++|+++|+++ |.|.+|.
T Consensus 23 ~~~~~l~V~nl~~~~t--~~~l~~~F~~~--G~i~~v~ 56 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLT--DQLMRQTFSPF--GQIMEIR 56 (109)
T ss_dssp SSCCEEEEECCSSCCC--HHHHHHHHHHH--SCEEEEE
T ss_pred CCCcEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEE
Confidence 3479999999999874 68999999875 3455553
No 58
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=95.97 E-value=0.033 Score=51.41 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=29.8
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 39 ~~~~~~l~V~nLp~~~~--~~~l~~~F~~~--G~i~~v~i~ 75 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVD--EVQLRQLFERY--GPIESVKIV 75 (139)
T ss_dssp TTTTSEEEEESCSTTCC--HHHHHHHHHHH--SCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEE
Confidence 34579999999999885 68999999986 567777654
No 59
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.95 E-value=0.078 Score=45.50 Aligned_cols=36 Identities=22% Similarity=0.157 Sum_probs=27.9
Q ss_pred CeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCC
Q 044501 333 GVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAP 382 (807)
Q Consensus 333 ~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP 382 (807)
|.|||+|++..+|+.|.+.+.... +++..++|+.|-
T Consensus 53 g~afV~f~~~~~A~~Ai~~l~g~~--------------~~gr~l~V~~a~ 88 (96)
T 2dgx_A 53 LKAVVQMENLQDAIGAVNSLHRYK--------------IGSKKILVSLAT 88 (96)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTEE--------------ETTEEEEEEECC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCE--------------ECCeEEEEEEcC
Confidence 579999999999999999876542 245567788774
No 60
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.91 E-value=0.014 Score=50.93 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=27.2
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEe
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIM 230 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v 230 (807)
...+||.|.|||.+.. +++|+++|+++ |.|.++.+
T Consensus 6 ~~~~~l~V~nlp~~~~--~~~l~~~f~~~--G~i~~~~i 40 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEAT--EEQLKDIFSEV--GPVVSFRL 40 (104)
T ss_dssp HHHSCEEEESCCTTSC--HHHHHHHHHTT--SCCSEEEE
T ss_pred CCccEEEEeCCCCcCC--HHHHHHHHHhc--CCeeEEEE
Confidence 3579999999999885 68999999875 44555543
No 61
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.79 E-value=0.059 Score=47.29 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=28.0
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEe
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIM 230 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v 230 (807)
...+||.|.|||.+.. +++|+++|+++.+ .|.+|.+
T Consensus 6 ~~~~~l~V~nLp~~~t--~~~l~~~f~~~G~-~v~~v~i 41 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKK--REEILEEIAKVTE-GVLDVIV 41 (109)
T ss_dssp CCSEEEEEECCCTTSC--HHHHHHHHHHHST-TEEEEEC
T ss_pred cCCCEEEEeCCCCcCC--HHHHHHHHHHhcC-CceEEEE
Confidence 3479999999999874 6899999998742 2776653
No 62
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.78 E-value=0.042 Score=48.71 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=24.2
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhh
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYK 220 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~ 220 (807)
.....+||.|.|||.+.. +++|+++|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t--~~~l~~~F~~~ 39 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVT--LDDLADFFKQC 39 (113)
T ss_dssp CCCCCCEEEEECCCTTCC--HHHHHHHHTTT
T ss_pred cCCCCCEEEEcCCCCCCC--HHHHHHHHHhc
Confidence 445689999999998875 68999999875
No 63
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.75 E-value=0.031 Score=49.53 Aligned_cols=39 Identities=31% Similarity=0.397 Sum_probs=30.6
Q ss_pred CcccceeEEEecCCCCCCCCHHHHH---HHHhhhCCCcEEEEEeec
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVE---EYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~---~~F~~~~pg~V~~V~v~~ 232 (807)
.....++|.|.|||.+.. +++|+ ++|+++ |.|.+|.+.+
T Consensus 11 r~~~~~~l~V~nLp~~~~--~~~l~~~~~~F~~~--G~i~~v~i~~ 52 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLA--DPEVLKRPEYFGKF--GKIHKVVINN 52 (111)
T ss_dssp CCCCSSCEEEEEECTTTC--CHHHHHSTTTTTTT--SCEEEEEEEC
T ss_pred cccCCCEEEEECCCCCCC--HHHHHHHHHHhhcc--CCEEEEEEec
Confidence 445689999999999886 46898 999875 5688887653
No 64
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=95.70 E-value=0.07 Score=52.80 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=28.6
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
.++||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 27 ~~~~l~V~nLp~~~t--~~~l~~~f~~~--G~i~~v~i~ 61 (216)
T 2qfj_A 27 IMSRVYVGSIYYELG--EDTIRQAFAPF--GPIKSIDMS 61 (216)
T ss_dssp HHTEEEEECCCTTCC--HHHHHHHHGGG--SCEEEEEEC
T ss_pred cCCEEEEECCCCCCC--HHHHHHHHHhC--CCEEEEEEe
Confidence 478999999999974 78999999986 567777543
No 65
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=95.65 E-value=0.068 Score=47.46 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=27.8
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
..+||.|.|||.+.. +++|+++|+.+ |.|.+|.+.
T Consensus 7 ~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~v~~v~i~ 41 (115)
T 3lqv_A 7 VNRILYIRNLPYKIT--AEEMYDIFGKY--GPIRQIRVG 41 (115)
T ss_dssp CCSEEEEESCCTTCC--HHHHHHHHHTT--SCEEEEEEE
T ss_pred CCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEe
Confidence 468999999999885 68999999875 557766543
No 66
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=95.64 E-value=0.031 Score=51.65 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=29.0
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEe
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIM 230 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v 230 (807)
......+||.|.|||.+.. +++|+++|+++ |.|.+|.+
T Consensus 42 ~~~~~~~~l~V~nLp~~~t--e~~L~~~F~~~--G~i~~v~i 79 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTS--PDTLRRVFEKY--GRVGDVYI 79 (135)
T ss_dssp SSGGGCCCEEEECCCSSCH--HHHHHHHHGGG--SCCSEEEC
T ss_pred CCCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCEEEEEE
Confidence 3445689999999999874 68999999875 44665543
No 67
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.61 E-value=0.078 Score=49.97 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=29.5
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
....++|.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 67 ~~~~~~l~v~nl~~~~~--~~~l~~~F~~~--G~v~~~~i~ 103 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTS--PDTLRRVFEKY--GRVGDVYIP 103 (158)
T ss_dssp CCBCCEEEEESCCTTCC--HHHHHHHHHHH--SCEEEEECC
T ss_pred CCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEe
Confidence 34579999999999885 68999999886 567777543
No 68
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=95.58 E-value=0.059 Score=47.21 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=29.2
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccc-eeEEeeCCC
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRN-QWKVERAPL 383 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~-~~~v~~AP~ 383 (807)
.|.|||+|++..+|+.|++.+.... +++. .+.|+.|-+
T Consensus 61 ~G~afV~f~~~~~A~~Ai~~l~g~~--------------~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 61 KGYIFLEYASPAHAVDAVKNADGYK--------------LDKQHTFRVNLFTD 99 (105)
T ss_dssp CCEEEEEECSSSHHHHHHHHCSSEE--------------CSTTCEEEEECSCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCcc--------------cCCCceEEEEEcch
Confidence 4899999999999999999776542 1444 678888743
No 69
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=95.53 E-value=0.036 Score=48.09 Aligned_cols=37 Identities=19% Similarity=0.415 Sum_probs=26.9
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
.....+||.|.|||.+.. +++|+++|+++ | |.+|.+.
T Consensus 15 ~~~~~~~l~V~nLp~~~t--~~~l~~~F~~~--G-i~~v~i~ 51 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVT--EESIKEFFRGL--N-ISAVRLP 51 (100)
T ss_dssp -----CEEEESCCSSCCS--SSHHHHHSCSS--C-EEEEECS
T ss_pred CCCCCcEEEEeCCCCCCC--HHHHHHHHHhc--C-CeEEEEE
Confidence 345689999999999986 47899999875 5 8887654
No 70
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=95.52 E-value=0.014 Score=49.48 Aligned_cols=32 Identities=34% Similarity=0.372 Sum_probs=24.5
Q ss_pred eeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEe
Q 044501 195 FTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIM 230 (807)
Q Consensus 195 rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v 230 (807)
+||.|.|||.+.. +++|+++|+++ |.|.+|.+
T Consensus 2 ~~l~V~nLp~~~t--~~~l~~~F~~~--G~i~~v~i 33 (90)
T 2ki2_A 2 RNIYVGNLVYSAT--SEQVKELFSQF--GKVFNVKL 33 (90)
T ss_dssp EEEEEEEECTTSS--HHHHTTTHHHH--TCCSEEEE
T ss_pred cEEEECCCCCCCC--HHHHHHHHHhc--CCEEEEEE
Confidence 7899999999875 67899999875 44555543
No 71
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=95.49 E-value=0.085 Score=45.11 Aligned_cols=41 Identities=29% Similarity=0.496 Sum_probs=31.2
Q ss_pred CeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCCCCe
Q 044501 333 GVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDI 387 (807)
Q Consensus 333 ~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P~DI 387 (807)
|.|||+|++..+|..|.+.+.... +++..++|+.|-.+.+.
T Consensus 52 g~afV~f~~~~~A~~A~~~l~g~~--------------~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 52 GQAFVIFKEVSSATNALRSMQGFP--------------FYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCE--------------ETTEECEEEECSSCCTH
T ss_pred cEEEEEeCCHHHHHHHHHHhCCCE--------------ECCcEEEEEEccCCCcc
Confidence 789999999999999999876542 14556778888665543
No 72
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.47 E-value=0.036 Score=48.07 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=29.7
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCC
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLA 384 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P 384 (807)
.+.|||+|++..+|+.|++.+.... +++..+.|+.|-..
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~~--------------~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 54 KGFGFVDFNSEEDAKAAKEAMEDGE--------------IDGNKVTLDWAKPK 92 (102)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCE--------------ETTEECEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCe--------------ECCeEEEEEEecCC
Confidence 4799999999999999999876642 14456778877543
No 73
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=95.31 E-value=0.059 Score=51.08 Aligned_cols=39 Identities=5% Similarity=-0.108 Sum_probs=29.1
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
..++|.|.|||.+.. +++|+++|+++.+..|.+|.+.+|
T Consensus 54 ~~~~lfVgnLp~~~t--e~~L~~~F~~~G~i~v~~v~i~~d 92 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTT--DQQLIQVIRSIGVYDVVELKFAEN 92 (156)
T ss_dssp --CEEEEECCCTTCC--HHHHHHHHHHTTCCCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCC--HHHHHHHHHHHCCccEEEEEEEec
Confidence 368999999999885 689999999864226887765533
No 74
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.28 E-value=0.11 Score=48.43 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=28.8
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEe
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIM 230 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v 230 (807)
.....+||.|.|||.+.. +++|+++|+++ |.|.+|.+
T Consensus 69 ~~~~~~~l~V~nl~~~~t--~~~l~~~F~~~--G~i~~v~i 105 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGN--KTELERAFGYY--GPLRSVWV 105 (150)
T ss_dssp SSTTSCEEEEESCCSCCS--CHHHHHHHHHH--SCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCC--HHHHHHHHHhh--CCEEEEEE
Confidence 345689999999999885 47899999886 45666643
No 75
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=95.27 E-value=0.1 Score=50.74 Aligned_cols=38 Identities=11% Similarity=0.216 Sum_probs=30.6
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
.....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.
T Consensus 9 ~~~~~~~l~V~nLp~~~t--e~~l~~~F~~~--G~i~~v~i~ 46 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETT--DESLRSHFEQW--GTLTDCVVM 46 (196)
T ss_dssp CCGGGGEEEEESCCTTCC--HHHHHHHHGGG--SCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCC--HHHHHHHHHhC--CCEEEEEEE
Confidence 345689999999999884 78999999986 567777654
No 76
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=95.24 E-value=0.019 Score=49.14 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=21.8
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhh
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYK 220 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~ 220 (807)
...+||.|.|||.+.. +++|+++|+++
T Consensus 13 ~~~~~l~V~nlp~~~t--~~~l~~~F~~~ 39 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVS--IDEILDFFYGY 39 (95)
T ss_dssp --CEEEEEECCCTTCC--HHHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCC--HHHHHHHHHhc
Confidence 4579999999999885 68999999764
No 77
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=95.18 E-value=0.058 Score=52.29 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=30.5
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCCCC
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATD 386 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P~D 386 (807)
.|.|||+|++..+|+.|++.+.... +++..+.|+.|..+..
T Consensus 129 kG~afV~F~~~~~A~~Ai~~lng~~--------------l~Gr~l~V~~a~~~~~ 169 (177)
T 2f3j_A 129 LGTADVHFERRADALKAMKQYKGVP--------------LDGRPMDIQLVASQID 169 (177)
T ss_dssp SCCEEEEESCHHHHHHHHHHSTTCB--------------CSSSBCEEEEESSGGG
T ss_pred eeEEEEEeCCHHHHHHHHHHhCCCE--------------ECCEEEEEEEecCCCC
Confidence 4899999999999999999776542 1455667888764433
No 78
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=95.11 E-value=0.068 Score=47.12 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=28.0
Q ss_pred CeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCC
Q 044501 333 GVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLA 384 (807)
Q Consensus 333 ~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P 384 (807)
+.|||+|++..+|+.|++.+.... +++..++|+.|-+|
T Consensus 63 g~afV~f~~~~~A~~A~~~l~g~~--------------~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 63 GYAFVQYSNERHARAAVLGENGRV--------------LAGQTLDINMAGEP 100 (110)
T ss_dssp TEEEEECSSSHHHHHHHHHHTTCE--------------ETTEECCEEESCCC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCE--------------ECCeEEEEEECCCC
Confidence 689999999999999998776542 14455677777544
No 79
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=95.01 E-value=0.093 Score=50.03 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=30.1
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
.....+||.|.|||.+.. ++.|+++|+++ |.|.+|.+.
T Consensus 68 ~~~~~~~l~V~nLp~~~t--~~~L~~~F~~~--G~i~~v~i~ 105 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQ--EDEIQEKFCDY--GEIKNIHLN 105 (165)
T ss_dssp CCC-CEEEEEESCCTTCC--HHHHHHHHGGG--SCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCC--HHHHHHHhhcC--CCEEEEEEE
Confidence 345678999999999874 68999999986 568877754
No 80
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=94.91 E-value=0.077 Score=46.79 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=23.4
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhh
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYK 220 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~ 220 (807)
.....+||.|.|||.+.. +++|+++|+++
T Consensus 27 ~~~~~~~l~V~nLp~~~t--~~~L~~~F~~~ 55 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQ--ESELNEIFGPF 55 (108)
T ss_dssp -CCSCSEEEECSSCTTCC--HHHHHHHHTTT
T ss_pred CCCCCCEEEEECCCCCCC--HHHHHHHHHhc
Confidence 345689999999999885 67899999764
No 81
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=94.80 E-value=0.15 Score=52.43 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=44.8
Q ss_pred CeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCCCCeeeCCcccCcchhHHHHH
Q 044501 333 GVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIYWNHLGLTKLSLRLRRV 404 (807)
Q Consensus 333 ~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~ 404 (807)
|.|||+|.+..+|..|.+.+.... +.+..+.|..|.+..-|.=.||..+..+..++.+
T Consensus 59 g~afV~f~~~~~A~~A~~~l~g~~--------------i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~ 116 (261)
T 3sde_A 59 GFGFIRLESRTLAEIAKAELDGTI--------------LKSRPLRIRFATHGAALTVKNLSPVVSNELLEQA 116 (261)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCE--------------ETTEECEEEECCCSSEEEEESCCTTCCHHHHHHH
T ss_pred cEEEEEECCHHHHHHHHHHcCCcE--------------ECCceeEeeecccCCcccccCCCCCCCHHHHHHH
Confidence 789999999999999998765542 1455678888887777888888877666665554
No 82
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=94.65 E-value=0.2 Score=50.42 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=27.9
Q ss_pred CcccceeEEEecCCC-CCCCCHHHHHHHHhhhCCCcEEEEE
Q 044501 190 NSTAIFTIMVQGLPK-SLGVDKTIVEEYFQYKYPGKVYKVI 229 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~-~~~~d~~~L~~~F~~~~pg~V~~V~ 229 (807)
....++||.|.|||. +.. +++|+++|+++ |.|.+|.
T Consensus 30 ~~~~~~~l~V~nLp~~~~t--e~~L~~~F~~~--G~i~~v~ 66 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVT--PQSLFILFGVY--GDVQRVK 66 (229)
T ss_dssp GCCCCSEEEEESCCTTTCC--HHHHHHHHHHH--TCEEEEE
T ss_pred CCCCCCEEEEeCCCcccCC--HHHHHHHHHhC--CCeEEEE
Confidence 345689999999999 774 68999999876 4466554
No 83
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=94.61 E-value=0.15 Score=47.93 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=30.4
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
......++|.|.|+|.+.. +++|+++|+++ |.|.++.+.
T Consensus 84 ~~~~~~~~l~v~nl~~~~t--~~~l~~~f~~~--G~i~~~~i~ 122 (168)
T 1b7f_A 84 GESIKDTNLYVTNLPRTIT--DDQLDTIFGKY--GSIVQKNIL 122 (168)
T ss_dssp SSTTTTCEEEEESCCTTCC--HHHHHHHHTSS--SCEEEEEEE
T ss_pred cccCCCCCEEEeCCCCCCC--HHHHHHhhhcC--CcEEEEEEE
Confidence 3455689999999999874 68999999875 467777654
No 84
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=94.54 E-value=0.12 Score=50.95 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=29.1
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeec
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~ 232 (807)
..++|.|.|||.+.. +++|+++|+++ |.|.+|.+.+
T Consensus 124 ~~~~l~v~nlp~~~t--~~~l~~~f~~~--G~v~~v~i~~ 159 (216)
T 2qfj_A 124 AFNRIYVASVHQDLS--DDDIKSVFEAF--GKIKSATLAR 159 (216)
T ss_dssp TSCEEEEECCCTTCC--HHHHHHHHTTS--SCEEEEEEEE
T ss_pred CCcEEEEeCCCCcCC--HHHHHHHHhcc--CCeeEEEEEe
Confidence 358999999999874 68999999875 5688777654
No 85
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=94.36 E-value=0.33 Score=48.07 Aligned_cols=34 Identities=29% Similarity=0.284 Sum_probs=26.5
Q ss_pred cceeEEEecCC-CCCCCCHHHHHHHHhhhCCCcEEEEEe
Q 044501 193 AIFTIMVQGLP-KSLGVDKTIVEEYFQYKYPGKVYKVIM 230 (807)
Q Consensus 193 ~~rTVlV~~IP-~~~~~d~~~L~~~F~~~~pg~V~~V~v 230 (807)
...||+|.|+| .+. +++.|++.|+++ |.|.+|.+
T Consensus 3 ~~~~l~V~nL~~~~~--~~~~L~~~F~~~--G~v~~v~i 37 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKM--NCDRVFNVFCLY--GNVEKVKF 37 (205)
T ss_dssp CCSEEEEECCCTTTC--CHHHHHHHHTTT--SCEEEEEE
T ss_pred CCCEEEEeCCCcccC--CHHHHHHHHHhc--CCeEEEEE
Confidence 36899999999 676 468999999875 56776653
No 86
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=94.27 E-value=0.13 Score=48.57 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=27.0
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEe
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIM 230 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v 230 (807)
...++|.|.|+|.+.. +++|+++|+++ |.|.+|.+
T Consensus 85 ~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~~~i 119 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVR--PKEFEEFFSQW--GTIIDAQL 119 (167)
T ss_dssp HHCEEEEEEEECTTCC--HHHHHHHHHTT--SCCSEEEC
T ss_pred cCCCeEEECCCCCCCC--HHHHHHHHHhC--ccEEEEEE
Confidence 3578999999999885 68899999875 45665543
No 87
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=94.10 E-value=0.13 Score=48.63 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=29.4
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
....++|.|.|+|.+.. +++|+++|+++ |.|.++.+.
T Consensus 91 ~~~~~~l~v~nlp~~~t--~~~l~~~f~~~--G~v~~v~i~ 127 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLN--DDQVKELLTSF--GPLKAFNLV 127 (172)
T ss_dssp CTTTTCEEEECCCTTCC--HHHHHHHHHTT--SCEEEEEEE
T ss_pred CCCCCEEEEEcCCCcCC--HHHHHHHHHhc--CCceEEEEE
Confidence 34579999999999884 68999999975 567777654
No 88
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=93.98 E-value=0.092 Score=53.13 Aligned_cols=39 Identities=5% Similarity=-0.047 Sum_probs=29.1
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
..+||.|.|||.+.. +++|+++|+++.+..|.+|.+.+|
T Consensus 67 ~~~~lfVgnL~~~~t--e~~L~~~F~~~G~~~v~~v~i~~d 105 (229)
T 3q2s_C 67 KRIALYIGNLTWWTT--DEDLTEAVHSLGVNDILEIKFFEN 105 (229)
T ss_dssp --CEEEEESCCTTCC--HHHHHHHHHTTTCCCEEEEEEEEC
T ss_pred CccEEEEeCCCCCCC--HHHHHHHHHHHCCcceEEEEEEec
Confidence 468999999999885 689999999863216888876643
No 89
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=93.27 E-value=0.28 Score=54.56 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=29.0
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
....||.|.|||.++. ++.|+++|+++ |.|.+|.|+
T Consensus 100 ~~~~~lfV~nL~~~~t--e~~L~~~F~~~--G~I~~v~i~ 135 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTT--ESKLRREFEVY--GPIKRIHMV 135 (437)
T ss_pred CCCCEEEEeCCCCCCC--HHHHHHHHHHc--CCeeEEEee
Confidence 4468999999999885 68999999985 567777654
No 90
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=93.22 E-value=0.4 Score=49.86 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=42.1
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCCCCeeeCCcccCcchhHHHHHHH
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIYWNHLGLTKLSLRLRRVLV 406 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~ 406 (807)
.|.|||+|.+..+|+.|++ +.... +++..+.++.++ ..-|.=.||.....+..++.++.
T Consensus 81 ~g~afV~f~~~~~A~~A~~-~~~~~--------------~~g~~i~v~~~~-~~~l~v~nlp~~~t~~~l~~~f~ 139 (292)
T 2ghp_A 81 FRFARIEFARYDGALAAIT-KTHKV--------------VGQNEIIVSHLT-ECTLWMTNFPPSYTQRNIRDLLQ 139 (292)
T ss_dssp SEEEEEEESSHHHHHHHHT-TTTCE--------------ETTEECEEEECC-SCEEEEECCCTTCCHHHHHHHHH
T ss_pred cEEEEEEECCHHHHHHHHH-hCCcE--------------eCCcEEEEEECC-CCEEEEECCCCCCCHHHHHHHHH
Confidence 3799999999999999995 32211 144556777774 66677788887777777666543
No 91
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.17 E-value=0.098 Score=44.90 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=35.8
Q ss_pred CeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCCCCeee
Q 044501 333 GVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIYW 389 (807)
Q Consensus 333 ~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P~DIiW 389 (807)
|.|||+|+++.+|+.|.+.+.... +.+..++|..|+.-+|++=
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~--------------l~gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENED--------------VFGNRIIVSFTPKNRELCE 89 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCC--------------SSSSCCEEESSCCSCCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCc--------------cCCceEEEEecCCCcceeE
Confidence 899999999999999999876642 1456678999999999864
No 92
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=92.77 E-value=0.26 Score=48.94 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=28.3
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
..++|.|.|+|.+.. +++|+++|+++ |.|.+|.+.
T Consensus 102 ~~~~l~v~nl~~~~t--~~~l~~~F~~~--G~i~~~~i~ 136 (213)
T 4f02_A 102 GVGNIFIKNLDKSID--NKALYDTFSAF--GNILSCKVV 136 (213)
T ss_dssp CTTEEEEESCCTTCC--HHHHHHHHGGG--SCEEEEEEE
T ss_pred ccccceECCcccccH--HHHHHHHHhhc--CCeEEEEee
Confidence 467899999999885 68999999986 567777654
No 93
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.46 E-value=0.17 Score=44.17 Aligned_cols=42 Identities=21% Similarity=0.401 Sum_probs=34.6
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
......+||.|.|+|.+.. ++.|+++|+++ |.|.+|.+.+|-
T Consensus 6 ~~~~~~~~lfV~~Lp~~~t--e~~L~~~F~~~--G~v~~v~i~~d~ 47 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDAT--LDDIKEWLEDK--GQVLNIQMRRTL 47 (103)
T ss_dssp SSCSGGGCEEEECCCTTCC--HHHHHHHHHTS--SCEEEEEEECCC
T ss_pred cccCCCCEEEEECCCCCCC--HHHHHHHHhhc--CCEEEEEEEECC
Confidence 3455689999999999875 68999999985 679999988654
No 94
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=92.33 E-value=0.25 Score=43.18 Aligned_cols=39 Identities=28% Similarity=0.346 Sum_probs=29.9
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCC
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAP 382 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP 382 (807)
+..|.|||+|++..+|+.|.+.+.... +++..+.|+.||
T Consensus 66 ~~~G~~fV~f~~~~~A~~A~~~lng~~--------------~~Gr~i~v~~sp 104 (104)
T 1jmt_A 66 HLVGNVYVKFRREEDAEKAVIDLNNRW--------------FNGQPIHAELSP 104 (104)
T ss_dssp SSEEEEEEEESCHHHHHHHHHHHTTCE--------------ETTEECCEEECC
T ss_pred CccEEEEEEECCHHHHHHHHHHHCCCE--------------ECCEEEEEEEcC
Confidence 457999999999999999999876542 144556677776
No 95
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=92.00 E-value=0.2 Score=41.84 Aligned_cols=41 Identities=27% Similarity=0.363 Sum_probs=33.7
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
.....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|-
T Consensus 7 ~~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~~~~ 47 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTS--KKDLKDYFTKF--GEVVDCTIKMDP 47 (87)
T ss_dssp CCSCTTEEEEECCCTTCC--HHHHHHHHTTT--SCEEEEEEEECT
T ss_pred CCCCCCEEEEeCCCCCCC--HHHHHHHHHhC--CCEEEEEEeecC
Confidence 344589999999999884 68999999985 679999887653
No 96
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=91.64 E-value=0.36 Score=49.99 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=29.2
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
.....++|.|.|+|.++. ++++|+++|+.+ |.|.+|.+.
T Consensus 180 ~~~~~~~l~v~nlp~~~~-~~~~l~~~f~~~--G~i~~v~i~ 218 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFN-DVDALCRALSAV--HSPTFCQLA 218 (284)
T ss_dssp TTTSCSEEEEECCCTTCC-CHHHHHHHTCSS--SCCSEEEEE
T ss_pred ccCCccEEEEecCCcccC-CHHHHHHHhhCC--CCeEEEEEE
Confidence 345679999999999875 578999999875 456665533
No 97
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.56 E-value=0.35 Score=41.42 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=36.8
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcc
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLC 235 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~ 235 (807)
.....+||.|.|||.+.. +++|+++|+++.||.|.+|.+.++..
T Consensus 11 ~~~~~~~l~V~nLp~~~t--~~~l~~~F~~~g~g~v~~~~~~~g~a 54 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTS--EEMIEKEFNNIKPGAVERVKKIRDYA 54 (99)
T ss_dssp CSSCCCEEEEESCCTTCC--HHHHHHHHHTTSTTCEEEEEECSSEE
T ss_pred ccCCcCEEEEeCCCCCCC--HHHHHHHHHhcCCcceEEEEEeCCeE
Confidence 344689999999999874 68999999998778899998877654
No 98
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=91.52 E-value=1.4 Score=45.37 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=25.0
Q ss_pred cccceeEEEecCCCCCCCCHHHHH----HHHhhhCCCcEEEEE
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVE----EYFQYKYPGKVYKVI 229 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~----~~F~~~~pg~V~~V~ 229 (807)
...++||.|.|||.+.. +++|+ ++|+++ |.|.+|.
T Consensus 6 ~~~~~~l~V~nlp~~~~--~~~l~~~L~~~F~~~--G~i~~v~ 44 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIK--KDELKKSLYAIFSQF--GQILDIL 44 (282)
T ss_pred CCCCCEEEEeCCCCCCC--HHHHHHHHHHHHhcc--CCeEEEE
Confidence 34589999999999885 57766 677653 4566554
No 99
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=91.43 E-value=0.28 Score=41.57 Aligned_cols=40 Identities=28% Similarity=0.298 Sum_probs=33.2
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
.....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 12 ~~~~~~~l~v~nlp~~~~--~~~l~~~F~~~--G~i~~v~i~~~ 51 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVR--EEILYELFLQA--GPLTKVTICKD 51 (95)
T ss_dssp CTTGGGEEEEECCCTTCC--HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCCEEEEECCCCCCC--HHHHHHHHHhc--CCEEEEEEEEC
Confidence 344689999999999875 68999999986 57999988765
No 100
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.24 E-value=0.36 Score=39.94 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=32.7
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeec
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~ 232 (807)
.....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+
T Consensus 8 ~~~~~~~l~V~~l~~~~t--~~~l~~~f~~~--G~i~~~~~~~ 46 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTIT--ETDLRNHFYQF--GEIRTITVVQ 46 (85)
T ss_dssp SCSSCCCEEEECCTTTSC--HHHHHHHHHTT--SCEEEEEEEG
T ss_pred CCCCccEEEEcCCCCCCC--HHHHHHHHHhC--CCEeEEEEEC
Confidence 345689999999999875 68999999986 5699998886
No 101
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.22 E-value=0.36 Score=42.19 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=33.2
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
....++||.|.|||.+.. +++|+++|+++ |.|.+|.+.++
T Consensus 11 ~~~p~~~l~V~nLp~~~t--e~~L~~~F~~f--G~V~~v~i~~~ 50 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVV--EADLVEALEKF--GTICYVMMMPF 50 (104)
T ss_dssp CCCCCSEEEEESCCSSCC--HHHHHHHHTTT--SCEEEEEEETT
T ss_pred cCCCCCEEEEeCCCCCCC--HHHHHHHHHhC--CCEEEEEEECC
Confidence 345679999999999885 68999999986 68999988753
No 102
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.15 E-value=0.28 Score=43.04 Aligned_cols=39 Identities=21% Similarity=0.131 Sum_probs=33.5
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
....++|.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 13 ~~~~~~LfV~nLp~~vt--e~dL~~lF~~f--G~V~~v~i~~~ 51 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVT--EGEVISLGLPF--GKVTNLLMLKG 51 (105)
T ss_dssp CCCCCEEEECSCCTTSC--HHHHHHHHHHH--CCEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCEEEEEEEcC
Confidence 34589999999999874 68999999987 68999999875
No 103
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=90.85 E-value=0.35 Score=42.05 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=32.5
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeec
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~ 232 (807)
....+++|.|.|+|.+.. +++|++.|+++ |.|.+|.+.+
T Consensus 17 ~~~ps~~l~V~NLp~~~t--e~~L~~lF~~f--G~V~~v~i~~ 55 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVV--EADLVEALQEF--GPISYVVVMP 55 (100)
T ss_dssp CCCCCSEEEEESCCTTCC--HHHHHHHHGGG--SCEEEEEEET
T ss_pred cCCCCcEEEEeCCCCCCC--HHHHHHHHhcc--CCEEEEEEEc
Confidence 445689999999999874 68999999986 6899998763
No 104
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=90.84 E-value=0.29 Score=40.87 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=32.0
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
..+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|.
T Consensus 5 ~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~~~~ 42 (89)
T 3ucg_A 5 DARSIYVGNVDYGAT--AEELEAHFHGC--GSVNRVTILCDK 42 (89)
T ss_dssp HHTEEEEESCCTTCC--HHHHHHHHGGG--CCEEEEEEEESC
T ss_pred cCCEEEEeCCCCCCC--HHHHHHHHHhC--CCEEEEEEEecC
Confidence 379999999999884 68999999986 679999887653
No 105
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.76 E-value=0.21 Score=43.87 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=33.9
Q ss_pred CCCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 188 NANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 188 ~~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
.......+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 23 ~~~~~~~~~l~V~nLp~~~t--e~~l~~~F~~~--G~i~~v~i~~~ 64 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFR--DPDLRQMFGQF--GKILDVEIIFN 64 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCC--HHHHHHHGGGT--CCCSCEEECCB
T ss_pred ccCCCCCCEEEEECCCCcCC--HHHHHHHHHhc--CCEEEEEEEEC
Confidence 44556789999999999875 68999999986 56888877654
No 106
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=90.25 E-value=0.32 Score=41.03 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=32.0
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
..+..||.|.|+|.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 8 ~~~~~~l~V~~Lp~~~t--e~~L~~~F~~~--G~i~~v~i~~~ 46 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMT--AEELQQFFCQY--GEVVDVFIPKP 46 (89)
T ss_dssp ---CCEEEEESCCTTCC--HHHHHHHHTTT--SCEEEEECCSS
T ss_pred CCCCCEEEEeCCCCCCC--HHHHHHHHhcc--CCEEEEEEeeC
Confidence 34589999999999985 68999999986 67999998874
No 107
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.23 E-value=0.23 Score=41.57 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=31.7
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
.++||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 4 ~~~~l~V~nLp~~~t--e~~l~~~F~~~--G~i~~v~i~~~ 40 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMT--EDELREFFSQY--GDVMDVFIPKP 40 (88)
T ss_dssp CCCEEEEESCCSSSC--HHHHHHHSTTT--SCCCEEECCSS
T ss_pred CCcEEEEeCCCCCCC--HHHHHHHHHHc--CCeeEEEEecC
Confidence 379999999999885 68999999986 56999998865
No 108
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.20 E-value=0.42 Score=40.09 Aligned_cols=41 Identities=17% Similarity=0.286 Sum_probs=34.5
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcc
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLC 235 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~ 235 (807)
....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|..
T Consensus 6 ~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~v~~~~~~~~~a 46 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACT--SQELRSLFERR--GRVIECDVVKDYA 46 (90)
T ss_dssp SCCSCCEEEESCCTTCC--HHHHHHHHHHH--SCEEEEEECSSCE
T ss_pred CCCCCEEEEeCCCCCCC--HHHHHHHHHcC--CCEEEEEEECCEE
Confidence 34579999999999874 68999999987 5699999988754
No 109
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.98 E-value=0.32 Score=41.52 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=32.2
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
..+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|-
T Consensus 4 ~~~~l~V~nLp~~~t--~~~l~~~F~~~--G~i~~v~i~~~~ 41 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTT--EETLKGVFSKV--GAIKSCTISKKK 41 (98)
T ss_dssp CCCCEEEESCCTTCC--HHHHHHHHHTT--SCEEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEEecC
Confidence 379999999999874 68999999986 579999887665
No 110
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.89 E-value=0.7 Score=40.66 Aligned_cols=47 Identities=23% Similarity=0.162 Sum_probs=35.4
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCCCCeeeCC
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIYWNH 391 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P~DIiW~N 391 (807)
..|.|||+|++..+|+.|.+.+.... +++..+.|+.|.+..|.-+..
T Consensus 63 ~~G~afV~f~~~~~A~~Ai~~lng~~--------------~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 63 PDGVASVSFRDPEEADYCIQTLDGRW--------------FGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp TTCEEEEECSCHHHHHHHHHHSTTCE--------------ETTEECEEEECCSCCCSSCCC
T ss_pred CCEEEEEEECCHHHHHHHHHHcCCCE--------------ECCcEEEEEEeCCCCCcccCC
Confidence 57999999999999999999876542 245567888886666654443
No 111
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.86 E-value=0.47 Score=41.71 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=32.6
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
.....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 11 ~~~~~~~l~V~nlp~~~~--~~~l~~~f~~~--G~i~~~~i~~~ 50 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVG--WKKLKEVFSMA--GVVVRADILED 50 (114)
T ss_dssp CCCCCSCEEEESCCTTCC--HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred cCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEEEC
Confidence 344589999999999874 68999999986 57998887654
No 112
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.77 E-value=0.44 Score=40.15 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=34.7
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcc
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLC 235 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~ 235 (807)
.....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.++..
T Consensus 6 ~~~~~~~l~V~nLp~~~t--~~~l~~~F~~~--G~v~~v~~~~~~a 47 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCT--NQELRAKFEEY--GPVIECDIVKDYA 47 (92)
T ss_dssp CCCSSEEEEEESCCSSCC--HHHHHHHHHTT--SCCCEEEECSSEE
T ss_pred CCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEECCEE
Confidence 344589999999999884 68999999986 5799999888754
No 113
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.66 E-value=0.55 Score=40.43 Aligned_cols=39 Identities=28% Similarity=0.378 Sum_probs=32.5
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 12 ~~~~~~l~v~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~~~ 50 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTT--EQDLKEYFSTF--GEVLMVQVKKD 50 (103)
T ss_dssp CCCCCCEEEESCCSSCC--HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCC--HHHHHHHHHhc--CCeEEEEEEec
Confidence 34579999999999885 68999999986 56999987765
No 114
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.59 E-value=0.48 Score=41.18 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=33.2
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
....+++|.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 11 ~~~p~~~l~V~nLp~~~t--e~~L~~~F~~f--G~v~~v~i~~~ 50 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVT--ETEVIALGLPF--GKVTNILMLKG 50 (101)
T ss_dssp CSSCCSEEEEESCCTTCC--HHHHHHTTTTT--SCEEEEEEETT
T ss_pred cCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCEEEEEEECC
Confidence 345689999999999874 68999999986 68999988764
No 115
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=89.49 E-value=0.65 Score=40.61 Aligned_cols=26 Identities=38% Similarity=0.732 Sum_probs=22.8
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
+..|.|||+|++..+|+.|.+.+...
T Consensus 57 ~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 57 PGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35689999999999999999988764
No 116
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=89.37 E-value=0.48 Score=42.21 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhhc------CCCCCCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 311 QELRAELETELAAYKE------GRAPGAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 311 ~~l~~ei~~~~~~~~~------~~~~~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
+++.++++++-+++.+ .+....|.|||+|++..+|+.|.+.+...
T Consensus 28 ~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 28 TEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp HHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 3455566665554421 01124699999999999999999988764
No 117
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.27 E-value=0.5 Score=40.74 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=32.6
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
....+||.|.|||.+.. +++|+++|++.+ |.|.+|.+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t--~~~l~~~F~~~~-G~v~~v~i~~~ 45 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVD--DGMLYEFFVKVY-PSCRGGKVVLD 45 (104)
T ss_dssp SSCCCCEEEECCCTTCC--HHHHHHHHHHHC-TTEEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCC--HHHHHHHHHHhC-CCeEEEEEEEC
Confidence 34579999999999874 689999999833 57999988765
No 118
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.17 E-value=0.38 Score=41.93 Aligned_cols=39 Identities=3% Similarity=-0.029 Sum_probs=33.1
Q ss_pred cccceeEEEecCCC-CCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 191 STAIFTIMVQGLPK-SLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 191 ~~~~rTVlV~~IP~-~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
...+++|.|.|||. +.. +++|+++|+++ |.|.+|.+.+|
T Consensus 12 ~~p~~~l~V~nLp~~~~t--e~dL~~lF~~f--G~V~~v~i~~~ 51 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNL--RYQLLQLVEPF--GVISNHLILNK 51 (102)
T ss_dssp CCCCCEEEEESCCCSSSH--HHHHHTTTGGG--SCEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCcCC--HHHHHHHHHhc--CCEEEEEEEcC
Confidence 34689999999999 874 68999999986 68999998864
No 119
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=89.15 E-value=0.5 Score=40.61 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=32.7
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
...++||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t--~~~l~~~F~~~--G~i~~v~i~~~ 44 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMD--ETEIRSFFARY--GSVKEVKIITD 44 (102)
T ss_dssp EEEEEEEEEECCCTTCC--HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC--HHHHHHHHHhC--CCeEEEEEEEC
Confidence 45689999999999885 68999999986 67999987754
No 120
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.08 E-value=0.47 Score=41.08 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=33.4
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
.....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~v~~v~i~~~ 51 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTT--QETLRSYFSQY--GEVVDCVIMKD 51 (105)
T ss_dssp CSSSSSEECCBSCCTTCC--HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEeeC
Confidence 345689999999999875 68999999986 57999988765
No 121
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.98 E-value=0.47 Score=42.64 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=33.6
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
....+++|.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 27 ~~~ps~~LfVgNLp~~vt--e~dL~~lF~~f--G~V~~v~i~~~ 66 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVT--EGEVISLGLPF--GKVTNLLMLKG 66 (119)
T ss_dssp CSSCCSEEEEESCCTTCC--HHHHHHHHTTT--SCCCEEEEEGG
T ss_pred cCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCEEEEEEeCC
Confidence 445689999999999874 78999999986 67999998865
No 122
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.91 E-value=0.56 Score=39.96 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=33.2
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
......++|.|.|||.+.. +++|+++|+++ |.|.+|.+..+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~v~~v~~~~~ 52 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTS--LAALAREFDRF--GSIRTIDHVKG 52 (97)
T ss_dssp CCCCCCSCEEEECCCSSCC--HHHHHHHHHTT--SCEEEEEECSS
T ss_pred CCCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeeEEEEeCC
Confidence 3445679999999999874 68999999986 57999987754
No 123
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.89 E-value=0.34 Score=40.11 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=31.0
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
..+||.|.|||.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 4 ~~~~l~v~nlp~~~t--~~~l~~~f~~~--G~i~~~~i~~~ 40 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTT--DQDLVKLCQPY--GKIVSTKAILD 40 (85)
T ss_dssp CCCEEEEESCCTTCC--HHHHHTTSTTT--SCEEEEEEECC
T ss_pred CCcEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEEec
Confidence 369999999999885 68999999986 57999887654
No 124
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=88.85 E-value=0.58 Score=40.58 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=32.9
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
.....++|.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~~~ 64 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVS--DADIQELFAEF--GTLKKAAVHYD 64 (107)
T ss_dssp CCCCSEEEEEESCCTTCC--HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEEEC
Confidence 344589999999999885 68999999985 57999987755
No 125
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=88.83 E-value=0.42 Score=41.94 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=30.5
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
.....+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 21 ~~~~~~~lfV~nLp~~~t--e~~L~~~F~~~--G~i~~v~i~~~ 60 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTT--QEGLREYFGQF--GEVKECLVMRD 60 (109)
T ss_dssp -----CCEEEESCCTTCC--HHHHHHHHTTT--SCEEEEEECCC
T ss_pred cCCCCCEEEEeCCCCCCC--HHHHHHHHHcc--CCeEEEEEEEC
Confidence 344689999999999885 68999999986 67999987765
No 126
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=88.51 E-value=0.29 Score=41.01 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=30.2
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCC
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPL 383 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~ 383 (807)
.|.|||+|++..+|+.|.+.+.... +++..++|+.||.
T Consensus 40 ~g~afV~f~~~~~a~~Ai~~l~g~~--------------~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 40 KRTAFVTLLNGEQAQNAIQMFHQYS--------------FRGKDLIVQLQPT 77 (88)
T ss_dssp GTEEEECCSCHHHHHHHHHHHTTEE--------------ETTEEEEEEECCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCe--------------ECCcEEEEEEcCC
Confidence 3799999999999999999776542 2456778999874
No 127
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=88.48 E-value=0.45 Score=39.05 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=29.5
Q ss_pred ceeEEEecCCCCCCC----CHHHHHHHHhhhCCCcEEEEEeec
Q 044501 194 IFTIMVQGLPKSLGV----DKTIVEEYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~----d~~~L~~~F~~~~pg~V~~V~v~~ 232 (807)
++||.|.|||.+..+ .+++|+++|+++ |.|.+|.+.+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i~~ 41 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYPE 41 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEECCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEecC
Confidence 479999999988752 257899999986 5799988663
No 128
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.33 E-value=0.52 Score=41.48 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=31.9
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
...+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 23 ~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~~~ 60 (114)
T 2cq4_A 23 RDARTVFCMQLAARIR--PRDLEDFFSAV--GKVRDVRIISD 60 (114)
T ss_dssp HHHTEEEEESCCTTCC--HHHHHHHHTTT--SCEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCC--HHHHHHHHHhC--CCEeEEEEEec
Confidence 4579999999999875 68999999986 67999987654
No 129
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=88.28 E-value=0.74 Score=39.68 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=33.7
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcc
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLC 235 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~ 235 (807)
...+||.|.|||.+.. +++|+++|+++ |.|.+|.+.++..
T Consensus 9 ~~~~~l~V~nl~~~~t--~~~l~~~F~~~--G~i~~v~~~~~~a 48 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVT--EEILEKAFSQF--GKLERVKKLKDYA 48 (103)
T ss_dssp CCCCCEEEECCCTTCC--HHHHHHHHHHH--SCEEEEEECSSCE
T ss_pred CCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCEEEEEEECCEE
Confidence 3479999999999874 68999999987 5799999887754
No 130
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.08 E-value=0.66 Score=40.49 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=32.8
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
...++|.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 13 ~~~~~l~V~nLp~~~t--~~~l~~~F~~~--G~i~~~~i~~~ 50 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGS--WQDLKDHMREA--GDVCYADVYRD 50 (108)
T ss_dssp SCCCEEEEESCCSSCC--HHHHHHHHGGG--SCEEEEEEETT
T ss_pred CCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCEeEEEEecC
Confidence 3479999999999874 68999999986 57999999886
No 131
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.90 E-value=0.54 Score=40.15 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=31.7
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEE-EEEeecCc
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVY-KVIMPMDL 234 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~-~V~v~~d~ 234 (807)
...+||.|.|||.+.. +++|+++|+++ |.|. +|.+.+|-
T Consensus 7 ~~~~~l~V~nLp~~~t--~~~l~~~F~~~--G~i~~~v~i~~~~ 46 (99)
T 2div_A 7 GMAASLWMGDLEPYMD--ENFISRAFATM--GETVMSVKIIRNR 46 (99)
T ss_dssp SSSSEEEECSCCTTCC--HHHHHHHHHHT--TCCCCEEEEEECS
T ss_pred CCccEEEEeCCCCCCC--HHHHHHHHHHh--CCcceEEEEeecC
Confidence 3579999999999874 68999999986 5677 88877553
No 132
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.50 E-value=0.35 Score=39.10 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=28.5
Q ss_pred eeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 195 FTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 195 rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
+||.|.|||.+.. +++|+++|++. |.|.++.+.+|
T Consensus 1 ~~l~v~nlp~~~t--~~~l~~~F~~~--G~v~~v~i~~~ 35 (77)
T 1uaw_A 1 CKMFIGGLSWQTT--QEGLREYFGQF--GEVKECLVMRD 35 (77)
T ss_dssp CCEEEESCCSSCC--SHHHHHHHTTT--SCCCCEEEECC
T ss_pred CEEEEeCCCCCCC--HHHHHHHHHhc--CCEEEEEEecC
Confidence 4799999999886 57899999986 56888877654
No 133
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.16 E-value=0.48 Score=40.39 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=31.5
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCCC
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLAT 385 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P~ 385 (807)
+.|.|||+|++..+|+.|++.+.... +++..++|+.|-.|.
T Consensus 56 ~~g~afV~f~~~~~a~~Ai~~l~g~~--------------~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 56 PTGEAMVAFESRDEATAAVIDLNDRP--------------IGSRKVKLVLGSGPS 96 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTCE--------------ETTEECEEEESSCSS
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCe--------------eCCeEEEEEEcCCCC
Confidence 45899999999999999998776542 145567888886654
No 134
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.86 E-value=0.56 Score=41.37 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=31.6
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
+.....++|.|.|||.+.. +++|+++|+.+ +|.+|.+++|
T Consensus 11 ~~~~~~~~v~V~nLp~~~t--e~dl~~~F~~~---~v~~v~i~~d 50 (109)
T 2dnn_A 11 PINPDDLYVSVHGMPFSAM--ENDVRDFFHGL---RVDAVHLLKD 50 (109)
T ss_dssp CCCHHHHEEEEECCCSSCC--HHHHHHHTTTS---CCCEEEECCC
T ss_pred CCCCCCCEEEEeCCCCCCC--HHHHHHHhccC---CeeEEEEEEC
Confidence 3444579999999999885 68999999975 4778887654
No 135
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.13 E-value=0.87 Score=39.98 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=32.8
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
.....+||.|.|||.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 21 ~~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~~~i~~~ 60 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMD--EQELENMLKPF--GQVISTRILRD 60 (114)
T ss_dssp CCCCTTEEEEESCCTTCC--HHHHHHTTTTT--SCEEEEEEEEC
T ss_pred cCCCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCEEEEEEEEC
Confidence 345679999999999875 68999999985 57999887765
No 136
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.11 E-value=1.1 Score=37.96 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=31.0
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEE-EeecC
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKV-IMPMD 233 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V-~v~~d 233 (807)
....++|.|.|||.+.. +++|+++|+++ |.|.+| .+.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~v~~~~~i~~~ 51 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQ--WEVLDSLLVQY--GVVESCEQVNTD 51 (96)
T ss_dssp CCSCCCEEEEEECSSSC--HHHHHHHHHHH--SCEEEEEEECCS
T ss_pred CCCCCEEEEEcCCCCCC--HHHHHHHHHhc--CCeEEEEEeecC
Confidence 34579999999999885 68999999987 568888 45543
No 137
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=86.07 E-value=0.44 Score=38.30 Aligned_cols=34 Identities=35% Similarity=0.560 Sum_probs=27.4
Q ss_pred eEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 196 TIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 196 TVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 1 ~l~v~nLp~~~t--~~~l~~~F~~~--G~i~~v~i~~~ 34 (75)
T 1iqt_A 1 KIFVGGLSPDTP--EEKIREYFGGF--GEVESIELPMD 34 (75)
T ss_dssp CEEESCCCSSCC--HHHHHHHHHHH--SCCSEECCCCS
T ss_pred CEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEEec
Confidence 689999999885 68999999987 55888776543
No 138
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.79 E-value=0.61 Score=41.21 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=30.6
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcE-EEEEeecC
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKV-YKVIMPMD 233 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V-~~V~v~~d 233 (807)
....+||.|.|||.+.. +++|+++|+++ |.| .+|.+.+|
T Consensus 12 ~~~~~~l~V~nLp~~~t--~~~l~~~F~~~--g~v~~~v~i~~d 51 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSIT--KMDVLQFLEGI--PVDENAVHVLVD 51 (114)
T ss_dssp CSCCCEEEEESCCTTSC--HHHHHHHTTTS--CCCSTTEEECCC
T ss_pred CCCccEEEEeCcCCcCC--HHHHHHHHHhC--CCcCCeEEEEEC
Confidence 44579999999999885 68999999985 566 56766544
No 139
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.76 E-value=1 Score=38.35 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=29.9
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCC
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLA 384 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P 384 (807)
.|.|||+|++..+|+.|++.+.... +++..+.|+.|-++
T Consensus 56 ~g~afV~f~~~~~a~~A~~~l~g~~--------------~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 56 RRRAFLHYPDSAAAQQAVSCLQGLR--------------LGTDTLRVALARQQ 94 (97)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCC--------------SSSSCCEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCE--------------ECCcEEEEEEcCCC
Confidence 4899999999999999998876542 24556778887543
No 140
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=85.40 E-value=0.8 Score=43.11 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=32.0
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
++||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|.
T Consensus 3 ~~~l~V~nLp~~~t--e~~l~~~F~~~--G~i~~v~i~~~~ 39 (175)
T 3nmr_A 3 AIKMFVGQVPRTWS--EKDLRELFEQY--GAVYEINVLRDR 39 (175)
T ss_dssp CEEEEEESCCTTCC--HHHHHHHHHTT--SCEEEEEEEEEC
T ss_pred ceEEEEeCCCCCCC--HHHHHHHHHhC--CCEEEEEEEecC
Confidence 69999999999884 68999999986 579999988764
No 141
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=85.15 E-value=0.83 Score=42.70 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=32.5
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
++||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|.
T Consensus 3 ~~~l~v~nLp~~~t--~~~l~~~F~~~--G~i~~v~i~~~~ 39 (167)
T 2cjk_A 3 SCKMFIGGLNWDTT--EDNLREYFGKY--GTVTDLKIMKDP 39 (167)
T ss_dssp GGEEEECSCCTTCC--HHHHHHHHTTT--CCEEEEECCCCT
T ss_pred CcEEEEeCCCCCCC--HHHHHHHHHhC--CCEEEEEEEECC
Confidence 69999999999884 68999999986 679999998874
No 142
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.13 E-value=1 Score=37.64 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=30.5
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
...+||.|.|||.+.. +++|+++|+++ .|.+|.+.+|
T Consensus 8 ~~~~~l~v~nLp~~~t--~~~l~~~F~~~---~i~~v~i~~~ 44 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVT--EKNVMEFLAPL---KPVAIRIVRN 44 (91)
T ss_dssp CCCCEEEEECCCSSCC--HHHHHHHHTTS---CCSEEEEEEC
T ss_pred CCccEEEEECCCCCCC--HHHHHHHHhhC---CceEEEEEEC
Confidence 4579999999999885 68999999975 4778877755
No 143
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=85.13 E-value=0.69 Score=41.32 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=31.7
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
..+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 35 ~~~~l~V~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~~~ 71 (124)
T 2jwn_A 35 DKRSVYVGNVDYGST--AQDLEAHFSSC--GSINRITILCD 71 (124)
T ss_dssp HHTEEEEEEECTTCC--HHHHHHHHHTT--SCEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCC--HHHHHHHHHhc--CCEEEEEEEec
Confidence 479999999999875 68999999986 67999988765
No 144
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=85.02 E-value=0.8 Score=40.54 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=30.8
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
..++|.|.|||.+.. +++|+++|+++ |.|.+|.+..|
T Consensus 15 ~~~~l~V~nLp~~~t--~~~l~~~F~~~--G~v~~~~i~~~ 51 (115)
T 3beg_B 15 SENRVVVSGLPPSGS--WQDLKDHMREA--GDVCYADVYRD 51 (115)
T ss_dssp --CCEEEEECCSSCC--TTHHHHHHGGG--SCEEEEEECTT
T ss_pred CCcEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEecC
Confidence 479999999999885 57899999986 57999999876
No 145
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=84.74 E-value=1 Score=39.78 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=29.1
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCC
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLA 384 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P 384 (807)
.|.|||+|++..+|+.|.+.+.... +++..+.|+.|-.|
T Consensus 67 rGfaFV~F~~~e~A~~Ai~~lng~~--------------l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 67 DGTGALEFPSEEILVEALERLNNIE--------------FRGSVITVERDDNP 105 (111)
T ss_dssp SCCEEEEESSHHHHHHHHHHTTTEE--------------ETTEEEEEEESCC-
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCE--------------ECCeEEEEEECCCC
Confidence 5899999999999999998875532 24556777777433
No 146
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=84.59 E-value=0.72 Score=41.89 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=34.1
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCCCCeeeC
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIYWN 390 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P~DIiW~ 390 (807)
.|.|||+|++..+|..|.+.+.... +.+..++|+.|-...|....
T Consensus 72 rG~aFV~F~~~~~A~~Ai~~lng~~--------------l~gr~l~V~~a~~~~~~~~~ 116 (127)
T 2a3j_A 72 SGKAYIVFATQESAQAFVEAFQGYP--------------FQGNPLVITFSETPQSQVAE 116 (127)
T ss_dssp CCCEEEEESSHHHHHHHHHHSTTCC--------------CTTSCCEEEECCCCCHHHHC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCE--------------eCCCEEEEEEccCcchhccc
Confidence 5899999999999999998876542 14456778888766665543
No 147
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.38 E-value=1 Score=38.49 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=29.3
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCC
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPL 383 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~ 383 (807)
..+.|||+|++..+|+.|++.+.... ++...++|+.|-+
T Consensus 52 ~~g~afV~f~~~~~A~~A~~~l~g~~--------------~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 52 SKGYAFIEFASFEDAKEALNSCNKRE--------------IEGRAIRLELQGP 90 (101)
T ss_dssp BCSEEEEECSSHHHHHHHHHHTSSEE--------------ETTEEEEEEECSS
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCE--------------eCCeEEEEEEcCC
Confidence 35899999999999999999776542 1445667777743
No 148
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.36 E-value=1.2 Score=37.73 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=29.4
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCC
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPL 383 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~ 383 (807)
..|.|||+|++..+|+.|++.+.... +++..+.|+.|-.
T Consensus 48 ~~g~afV~f~~~~~a~~Ai~~l~g~~--------------~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 48 PRNCAFVTYEKMESADQAVAELNGTQ--------------VESVQLKVNIARK 86 (97)
T ss_dssp TTTEEEEEESSHHHHHHHHHHTTTEE--------------ETTEEEEEECCSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCe--------------ECCeEEEEEECCC
Confidence 35899999999999999998876542 1445667777743
No 149
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=84.09 E-value=1.5 Score=37.45 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.3
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
..|.|||+|++..+|+.|++ +...
T Consensus 57 ~~g~afV~f~~~~~a~~A~~-l~g~ 80 (101)
T 1fj7_A 57 NRKFGYVDFESAEDLEKALE-LTGL 80 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHH-GGGC
T ss_pred cCcEEEEEECCHHHHHHHHh-cCCc
Confidence 35899999999999999998 5543
No 150
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=83.84 E-value=0.87 Score=39.77 Aligned_cols=38 Identities=26% Similarity=0.137 Sum_probs=29.9
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCC
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAP 382 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP 382 (807)
..|.|||+|++..+|+.|.+.+.... +++..+.|+.|+
T Consensus 55 ~~G~~FV~f~~~~~A~~Ai~~lnG~~--------------~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 55 EAVRIFLEFERVESAIKAVVDLNGRY--------------FGGRVVKACFYN 92 (105)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHTTCE--------------ETTEECEEEECC
T ss_pred CcEEEEEEECCHHHHHHHHHHHCCCE--------------ECCcEEEEEEcC
Confidence 35899999999999999999887642 245566778775
No 151
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=83.68 E-value=1.3 Score=38.04 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=30.1
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCCC
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLAT 385 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P~ 385 (807)
.+.|||+|++..+|+.|++.+.... ++...+.|+.|-.+.
T Consensus 45 ~~~afV~f~~~~~a~~A~~~l~g~~--------------~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 45 KDYAFIHFDERDGAVKAMEEMNGKD--------------LEGENIEIVFAKPPD 84 (103)
T ss_dssp SSCEEEEESSHHHHHHHHHHHTTEE--------------ETTEEEEEEECCCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHCCCc--------------cCCCEEEEEEcCCCc
Confidence 5799999999999999999876542 144566777775443
No 152
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.64 E-value=0.83 Score=40.29 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=31.7
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
...+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 25 ~~~~~l~V~nLp~~~t--e~~l~~~F~~~--G~i~~v~i~~~ 62 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETT--EESLRNYYEQW--GKLTDCVVMRD 62 (116)
T ss_dssp HHHTEEEEECCTTCCC--HHHHHHHHTSS--CCCSEEEEECC
T ss_pred CCCCEEEEeCCCCCCC--HHHHHHHHHhc--CCEEEEEEEEC
Confidence 4579999999999874 68999999985 57888887765
No 153
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.43 E-value=0.69 Score=41.76 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=30.6
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCC--CcEEEEEeecC
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYP--GKVYKVIMPMD 233 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~p--g~V~~V~v~~d 233 (807)
.++|.|.|||.+.. +++|+++|+++.+ |.|.+|.+++|
T Consensus 23 ~~~v~V~nLp~~~t--e~dl~~~F~~~g~v~g~v~~v~i~~d 62 (123)
T 2dha_A 23 QVIVRMRGLPFTAT--AEEVVAFFGQHCPITGGKEGILFVTY 62 (123)
T ss_dssp CCEEEECSCCTTCC--HHHHHHHHHTTSCCTTGGGGEEEEEC
T ss_pred CCEEEEeCCCCCCC--HHHHHHHHHhhCCccCCcceEEEEEC
Confidence 68999999999875 7899999998754 34567877765
No 154
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.13 E-value=1.4 Score=38.71 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=30.7
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeec
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~ 232 (807)
+.+||.|.|||.+.. +++|+++|+++ |.|.+|.+.+
T Consensus 9 ~~~~l~V~nLp~~~t--e~~L~~~F~~~--G~i~~v~i~~ 44 (111)
T 1whx_A 9 SKTVILAKNLPAGTL--AAEIQETFSRF--GSLGRVLLPE 44 (111)
T ss_dssp EEEEEEEESCCTTCC--HHHHHHHHHTT--SCEEEEECCS
T ss_pred CCCEEEEeCCCCCCC--HHHHHHHHHhc--CCEEEEEEeC
Confidence 478999999999874 68999999986 6799988764
No 155
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=83.12 E-value=0.76 Score=36.86 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=27.0
Q ss_pred eEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 196 TIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 196 TVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
+|.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 1 ~l~v~nlp~~~t--~~~l~~~F~~~--G~i~~v~i~~~ 34 (75)
T 2mss_A 1 KIFVGGLSVNTT--VEDVKHYFEQF--GKVDDAMLMFD 34 (75)
T ss_dssp CEEEECCCSSCC--HHHHHHHHHTT--SCCSEECCCBC
T ss_pred CEEEecCCCCCC--HHHHHHHHHhc--CCEEEEEEEec
Confidence 478999999885 68999999986 56888765543
No 156
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=83.06 E-value=1.2 Score=37.65 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=28.9
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCC
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAP 382 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP 382 (807)
.|.|||+|++..+|+.|.+.+.... +++..+.|+.|-
T Consensus 53 ~g~afV~f~~~~~a~~A~~~l~g~~--------------~~g~~l~v~~a~ 89 (96)
T 1fjc_A 53 KGIAYIEFKSEADAEKNLEEKQGAE--------------IDGRSVSLYYTG 89 (96)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTEEE--------------ETTEEEEEEECS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCE--------------ECCeEEEEEEcC
Confidence 4899999999999999999776532 145567888884
No 157
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=82.98 E-value=0.91 Score=40.25 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=32.1
Q ss_pred CcccceeEEEecCCCC-CCCCHHHHHHHHhhhCCCcEEEEEeec
Q 044501 190 NSTAIFTIMVQGLPKS-LGVDKTIVEEYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~-~~~d~~~L~~~F~~~~pg~V~~V~v~~ 232 (807)
....+++|.|.|||.+ .. +++|+++|+++ |.|.+|.+.+
T Consensus 21 ~~~p~~~l~V~NLp~~~~t--e~~L~~lF~~f--G~V~~v~i~~ 60 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYS--DSAVLKLAEPY--GKIKNYILMR 60 (112)
T ss_dssp SSCCCCEEEEESCCCSSCC--SHHHHTTTTTT--SCCSEEEEET
T ss_pred cCCCCCEEEEeCCCCccCC--HHHHHHHHHhc--CCEEEEEEec
Confidence 3456899999999997 75 57899999986 6799998864
No 158
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=82.80 E-value=1.4 Score=37.71 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=30.1
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
...+||.|.|||.+.. +++|+++|+++ |.|.++.+.
T Consensus 25 ~~~~~l~V~nlp~~~~--~~~l~~~f~~~--G~i~~~~~~ 60 (101)
T 2la4_A 25 PRVTTAYIGNIPHFAT--EADLIPLFQNF--GFILDFKHY 60 (101)
T ss_dssp SSCCEEEEESCCTTCC--HHHHHHHHHTT--SCCSEEEEE
T ss_pred CCCCEEEEcCCCcccC--HHHHHHHHHhC--CCEEEEEEe
Confidence 3479999999999885 68999999986 568888776
No 159
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=82.71 E-value=1.1 Score=38.24 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=30.2
Q ss_pred eeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 195 FTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 195 rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
.||.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 1 ~~l~V~nLp~~~t--~~~l~~~F~~~--G~i~~v~i~~~ 35 (101)
T 2hvz_A 1 MKVYVGNLGTGAG--KGELERAFSYY--GPLRTVWIARN 35 (101)
T ss_dssp CEEEEECCCSSCS--HHHHHHHHHHH--CCCSEEEEESS
T ss_pred CEEEEeCCCCCCC--HHHHHHHHHhc--CCeEEEEEeeC
Confidence 3899999999874 68999999987 56899999887
No 160
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.70 E-value=2 Score=36.21 Aligned_cols=37 Identities=30% Similarity=0.576 Sum_probs=29.5
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
..++|.|.|||.+.. +++|+++|+++ |.|.+|..-++
T Consensus 7 ~~~~l~V~nl~~~~t--~~~l~~~F~~~--G~v~~v~~~~~ 43 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVD--SAQLSEYFLAF--GPVASVVMDKD 43 (94)
T ss_dssp TCCEEEEECCCTTCC--HHHHHHHGGGT--SCEEEEEECSS
T ss_pred CCCEEEEECCCCCCC--HHHHHHHHHhc--CCeEEEEEcCC
Confidence 468999999999885 68999999986 56888744333
No 161
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=82.43 E-value=1.9 Score=35.40 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=31.2
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhh----C----CC-cEEEEEeecC
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYK----Y----PG-KVYKVIMPMD 233 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~----~----pg-~V~~V~v~~d 233 (807)
.++||.|.|||.+.. +++|+++|++. . |+ .|.++.+.++
T Consensus 5 ~~~~l~V~nLp~~~t--~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~ 52 (87)
T 2hzc_A 5 SARRLYVGNIPFGIT--EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 52 (87)
T ss_dssp GGGEEEEESCCTTCC--HHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS
T ss_pred CCCEEEEeCCCCCCC--HHHHHHHHHHHhhhcccccCCCCcceEEEecCC
Confidence 479999999999885 68999999986 3 11 5888888755
No 162
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=82.34 E-value=1.1 Score=40.68 Aligned_cols=40 Identities=15% Similarity=0.013 Sum_probs=31.3
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEE--EEeecC
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYK--VIMPMD 233 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~--V~v~~d 233 (807)
.....+||.|.|||.+.. +++|+++|+++ |.|.. |.+.+|
T Consensus 19 ~~~~~~~lfV~nL~~~~t--e~~L~~~F~~~--G~v~~~~v~i~~d 60 (131)
T 2m2b_A 19 SENANDTIILRNLNPHST--MDSILGALAPY--AVLSSSNVRVIKD 60 (131)
T ss_dssp CSCCCCEEEECSCCTTCC--SHHHHHHHGGG--CCCCTTTEECCBC
T ss_pred CCCCCCEEEEeCCCCCCC--HHHHHHHHHHh--CCcceeeEEEEEc
Confidence 345689999999999986 57999999986 56754 776655
No 163
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.08 E-value=1.9 Score=36.34 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=30.2
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCC
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLA 384 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P 384 (807)
.++.|||+|.+..+|+.|++.+.... +++..+.|+.|.+.
T Consensus 53 ~~~~afV~f~~~~~a~~Ai~~l~g~~--------------~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 53 ETAVVNVTYSSKDQARQALDKLNGFQ--------------LENFTLKVAYIPDE 92 (96)
T ss_dssp SSEEEEEEESSHHHHHHHHHHHTTCB--------------CSSCBCEEEECCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCE--------------ECCcEEEEEEcCcc
Confidence 34559999999999999999776542 24566788988643
No 164
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.97 E-value=1.7 Score=38.12 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=21.8
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
..|.|||+|++..+|+.|++.+...
T Consensus 66 ~~g~afV~f~~~~~a~~Ai~~l~g~ 90 (115)
T 2cpx_A 66 MRGQAFITFPNKEIAWQALHLVNGY 90 (115)
T ss_dssp SCSEEEEECSSHHHHHHHHHHSTTC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCC
Confidence 4589999999999999999987654
No 165
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=81.77 E-value=1.1 Score=38.03 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.4
Q ss_pred CeeEEEEcCHHHHHHHHHHhhhh
Q 044501 333 GVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 333 ~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
|.|||+|++..+|+.|++.+...
T Consensus 46 g~afV~f~~~~~A~~A~~~l~g~ 68 (96)
T 2kvi_A 46 AFGFIQFDNPQSVRDAIECESQE 68 (96)
T ss_dssp TEEEEEESCHHHHHHHHHHHTCS
T ss_pred CEEEEEECCHHHHHHHHHHcCCC
Confidence 69999999999999999986654
No 166
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=81.51 E-value=1.7 Score=37.01 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.0
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
..|.|||+|++..+|..|.+.+...
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~ 60 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGK 60 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHS
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCC
Confidence 4789999999999999999987654
No 167
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.40 E-value=1.9 Score=36.43 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=21.3
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
.+.|||+|++..+|+.|.+.+...
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~ 76 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGF 76 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCC
Confidence 579999999999999999987654
No 168
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=81.38 E-value=1.6 Score=36.95 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=29.1
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeC
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERA 381 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~A 381 (807)
.|.|||+|.++.+|..|.+.+.... +.+..++|+.|
T Consensus 43 kGfaFVey~~~~eA~~Ai~~Ln~~~--------------l~gr~I~V~~A 78 (89)
T 2wbr_A 43 QGIALCKYTTREEANKAQMALNNCV--------------LANTTIFAESP 78 (89)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTEE--------------ETTEEEEEECC
T ss_pred CcEEEEEECCHHHHHHHHHHhcCCE--------------ECCcEEEEEEC
Confidence 4999999999999999999886542 24556788888
No 169
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=81.18 E-value=2.3 Score=36.20 Aligned_cols=41 Identities=15% Similarity=0.231 Sum_probs=32.5
Q ss_pred CcccceeEEEecCCC-CCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 190 NSTAIFTIMVQGLPK-SLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~-~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
.....+||.|.|||. +.. +++|+++|+++ |.|.+|.+.+..
T Consensus 18 ~~~~~~~l~V~nLp~~~~t--~~~L~~~F~~~--G~v~~v~i~~g~ 59 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVS--KEDLFRIFSPY--GHIMQINIKNAF 59 (97)
T ss_dssp -CCTTCEEEEESCCSSCCC--HHHHHHHHGGG--SCEEEEEECSSE
T ss_pred CCCCCCEEEEeCCCcccCC--HHHHHHHHHhc--CCEEEEEEeCCE
Confidence 344689999999997 775 68999999986 679998886543
No 170
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=80.97 E-value=1 Score=36.09 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.6
Q ss_pred CCCCeeEEEEcCHHHHHHHHH
Q 044501 330 PGAGVAFVMFKDVYTANKAVQ 350 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q 350 (807)
+..|.|||+|++..+|+.|.+
T Consensus 39 ~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 39 RHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp TSCBEEEEECSCHHHHHHHHS
T ss_pred CcCcEEEEEECCHHHHHHHHH
Confidence 456899999999999999886
No 171
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=80.90 E-value=1.6 Score=37.00 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=31.1
Q ss_pred cccceeEEEecCCC-CCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 191 STAIFTIMVQGLPK-SLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 191 ~~~~rTVlV~~IP~-~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
....+||.|.|||. +.. +++|+++|+++ |.|.+|.+.+..
T Consensus 7 ~~~~~~l~V~nlp~~~~t--~~~l~~~F~~~--G~v~~v~i~~g~ 47 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVS--KEDLFRIFSPY--GHIMQINIKNAF 47 (96)
T ss_dssp --CCEEEEEESSTTSCCC--HHHHHHHHTTT--CCCCEEEEETTE
T ss_pred CCCCCEEEEeCCCcccCC--HHHHHHHHHhc--CCEEEEEEeCCE
Confidence 34589999999997 774 68999999986 568888876543
No 172
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.80 E-value=1.4 Score=37.03 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.6
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhh
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRN 354 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~ 354 (807)
.+.|||+|++..+|+.|++.+..
T Consensus 44 ~g~afV~f~~~~~A~~A~~~l~g 66 (93)
T 2cqh_A 44 SGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp TTEEEECCSCHHHHHHHHHHHTT
T ss_pred CCEEEEEECCHHHHHHHHHHccC
Confidence 37999999999999999998765
No 173
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=80.56 E-value=1.2 Score=39.04 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.9
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
..+.|||+|.+..+|+.|.+.+...
T Consensus 45 ~~g~afV~f~~~~~A~~Ai~~l~g~ 69 (111)
T 1whx_A 45 GGITAIVEFLEPLEARKAFRHLAYS 69 (111)
T ss_dssp SSSCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 4578999999999999999987654
No 174
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.48 E-value=1.9 Score=37.30 Aligned_cols=22 Identities=41% Similarity=0.448 Sum_probs=19.8
Q ss_pred CCCCeeEEEEcCHHHHHHHHHH
Q 044501 330 PGAGVAFVMFKDVYTANKAVQD 351 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~ 351 (807)
+..|.|||+|++..+|..|.+.
T Consensus 52 ~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 52 KKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp SSSSEEEEEESCHHHHHHHHHT
T ss_pred CCCCEEEEEECCHHHHHHHHHh
Confidence 3568999999999999999987
No 175
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=80.37 E-value=1.6 Score=36.99 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.1
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
+..|.|||+|++..+|+.|++.+...
T Consensus 48 ~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (98)
T 2cpf_A 48 LSMGFGFVEYKKPEQAQKALKQLQGH 73 (98)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHSTTC
T ss_pred CcccEEEEEECCHHHHHHHHHHhCCC
Confidence 34589999999999999999987654
No 176
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.33 E-value=1.5 Score=38.51 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=22.6
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhh
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYK 220 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~ 220 (807)
.++||.|.|||.+.. +++|+++|+++
T Consensus 7 ~~~~lfVgnLp~~~t--e~~L~~~F~~~ 32 (114)
T 2dnl_A 7 GSRKVFVGGLPPDID--EDEITASFRRF 32 (114)
T ss_dssp CCCCEEEECCCTTCC--HHHHHHHTTTT
T ss_pred CCCEEEEcCCCCCCC--HHHHHHHHHhc
Confidence 479999999999885 68999999875
No 177
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.32 E-value=2 Score=36.54 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=29.1
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCC
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAP 382 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP 382 (807)
..+.|||+|++..+|+.|++.+.... +++..++|+.|-
T Consensus 50 ~~g~afV~f~~~~~A~~A~~~l~g~~--------------~~g~~l~v~~a~ 87 (99)
T 2cpd_A 50 IRDYAFVHFSNREDAVEAMKALNGKV--------------LDGSPIEVTLAK 87 (99)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHSSEE--------------ETTEEEEEECCC
T ss_pred eCCeEEEEeCCHHHHHHHHHHhCCCE--------------eCCcEEEEEECC
Confidence 46899999999999999999776542 144566777774
No 178
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.29 E-value=2.3 Score=35.59 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=28.5
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCC
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAP 382 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP 382 (807)
.+.|||+|++..+|..|++.+.... +++..++|+.|-
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~--------------~~g~~l~V~~a~ 80 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTE--------------FQGKRMHVQLST 80 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEE--------------ETTEEEEEEESS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCe--------------eCCcEEEEEEcc
Confidence 5699999999999999998776542 145567777774
No 179
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.23 E-value=2 Score=35.76 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=28.5
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCC
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPL 383 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~ 383 (807)
.+.|||+|++..+|+.|++.+.... +++..++|+.|-.
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~~--------------~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGKE--------------VKGKRINVELSTK 80 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCE--------------ETTEECEEEESCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCE--------------ECCcEEEEEECCC
Confidence 4699999999999999999776542 1445567777743
No 180
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=80.21 E-value=2 Score=36.51 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=21.7
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
..|.|||+|++..+|..|++.+...
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQE 80 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTS
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCC
Confidence 3689999999999999999987554
No 181
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.97 E-value=0.92 Score=36.46 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.4
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFR 353 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~ 353 (807)
++.|.|||+|++..+|..|.+.+.
T Consensus 40 ~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 40 RSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp SCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CcCceEEEEEcCHHHHHHHHHhCC
Confidence 457899999999999999999776
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=79.58 E-value=2.9 Score=42.93 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=46.7
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCCCCeeeCCcccCcchhHHHHHH
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIYWNHLGLTKLSLRLRRVL 405 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~ 405 (807)
.|.|||+|.+..+|..|.+.+.... +++..+.++.+|...-|.=.||..+..+.-++.++
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~~~~--------------~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f 116 (284)
T 3smz_A 57 KGTAFVTLLNGEQAEAAINAFHQSR--------------LRERELSVQLQPTDALLCVANLPPSLTQQQFEELV 116 (284)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCE--------------ETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCe--------------eCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHH
Confidence 4799999999999999998776542 14556788889877778888998877776666543
No 183
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=79.26 E-value=1.1 Score=37.75 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.2
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
+..|.|||+|++..+|+.|++.+...
T Consensus 55 ~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (95)
T 2ywk_A 55 KPKSFGFVCFKHPESVSYAIALLNGI 80 (95)
T ss_dssp CEEEEEEEEESSTHHHHHHHHHHTTC
T ss_pred CCceEEEEEECCHHHHHHHHHHhCCC
Confidence 44689999999999999999977654
No 184
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=78.66 E-value=2.3 Score=38.44 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=29.9
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEE--EEEeecC
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVY--KVIMPMD 233 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~--~V~v~~d 233 (807)
....++|.|.|||.+.. +++|+++|+++ +|. +|.+.+|
T Consensus 39 ~~~~~~lfVgnLp~~~t--e~dL~~~F~~~---~i~~~~v~i~~d 78 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCT--KEEIVQFFSGL---EIVPNGITLPVD 78 (126)
T ss_dssp SSSCCEEEEECCCTTCC--HHHHHHHTTTS---CEEEEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCC--HHHHHHHHhcC---CceeeEEEEEEC
Confidence 34579999999999885 68999999985 355 7776654
No 185
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.57 E-value=1.4 Score=38.12 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=30.1
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
.....++|.|.|||.+.. +++|+++|+++. +.+|.+++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t--e~~l~~~F~~~G---~~~v~i~~d 49 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRAT--ENDIYNFFSPLN---PMRVHIEIG 49 (102)
T ss_dssp CCSSSCEEEEESCCTTCC--HHHHHHSSCSCC---CSEEEEEES
T ss_pred CCCCCCEEEEeCCCCCCC--HHHHHHHHHHcC---ceEEEEEEC
Confidence 344579999999999885 689999999753 347777654
No 186
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=78.51 E-value=1.6 Score=42.29 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=32.4
Q ss_pred cceeEEEecCCC-CCCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 193 AIFTIMVQGLPK-SLGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 193 ~~rTVlV~~IP~-~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
+++||.|.|||. +.. +++|+++|+++ |.|.+|.+.+|-
T Consensus 2 ~~~~l~v~nlp~~~~~--~~~l~~~F~~~--G~i~~v~i~~~~ 40 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVT--PQSLFILFGVY--GDVQRVKILFNK 40 (198)
T ss_dssp CCCEEEEECCCSSSCC--HHHHHHHHHTT--CCCSEEECSTTC
T ss_pred CCcEEEEeCCCcccCC--HHHHHHHHHhc--CCEEEEEEEeCC
Confidence 469999999999 774 68999999986 569999998775
No 187
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=78.16 E-value=1.4 Score=38.00 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.3
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
+..|.|||+|++..+|+.|++.+...
T Consensus 68 ~~~g~afV~f~~~~~a~~A~~~l~g~ 93 (107)
T 3ulh_A 68 RSLGTADVHFERKADALKAMKQYNGV 93 (107)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCC
Confidence 45689999999999999999977654
No 188
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.88 E-value=1.3 Score=36.94 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.7
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRN 354 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~ 354 (807)
+..|.|||+|++..+|+.|++ +..
T Consensus 48 ~~~g~afV~f~~~~~a~~A~~-~~g 71 (91)
T 2dgw_A 48 NKTGYIFVDFSNEEEVKQALK-CNR 71 (91)
T ss_dssp CEEEEEEEECSSHHHHHHHHH-SCS
T ss_pred CCceEEEEEECCHHHHHHHHH-hCC
Confidence 457899999999999999998 544
No 189
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.82 E-value=2.3 Score=36.89 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.8
Q ss_pred CeeEEEEcCHHHHHHHHHHhhhh
Q 044501 333 GVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 333 ~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
+.|||+|++..+|+.|++.+...
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~ 73 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNT 73 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSE
T ss_pred CEEEEEECCHHHHHHHHHHHCcC
Confidence 89999999999999999987654
No 190
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=77.78 E-value=1.3 Score=39.36 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=30.3
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCC-CcEEEEEeecC
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYP-GKVYKVIMPMD 233 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~p-g~V~~V~v~~d 233 (807)
...+||.|.|||.+.. +++|+++|+++.+ +.|.+|.+.+|
T Consensus 15 ~~~~~l~V~nLp~~~t--e~~l~~~F~~~G~~~~v~~v~i~~~ 55 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCS--IEDVQNFLSDCTIHDGVAGVHFIYT 55 (118)
T ss_dssp CCCCEEEEESCCTTCC--HHHHHHHTTTSCBTTGGGGEEEEEC
T ss_pred CCCcEEEEeCCCCCCC--HHHHHHHHHHcCCccCceeEEEEEC
Confidence 3579999999999885 6899999998532 12677776654
No 191
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=77.70 E-value=3.2 Score=38.76 Aligned_cols=40 Identities=10% Similarity=0.103 Sum_probs=33.0
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
.....++|.|.|+|.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 91 ~~~~~~~l~v~nl~~~~t--~~~l~~~F~~~--G~i~~v~~~~~ 130 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCT--ENDIRVMFSSF--GQIEECRILRG 130 (175)
T ss_dssp SCGGGSEEEEESCCTTCC--HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred ccCCCCeEEEcCCCCcCC--HHHHHHHHHhC--CCEEEEEEEEC
Confidence 344689999999999874 68999999986 56999987764
No 192
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=77.65 E-value=3.1 Score=35.13 Aligned_cols=37 Identities=5% Similarity=0.044 Sum_probs=31.5
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeec
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~ 232 (807)
..+..++|.|++.+.. |+.|++.|.++ |.|.++++..
T Consensus 5 ~~~~wL~VgNL~~~~t--e~~L~~lF~q~--G~V~~~~l~~ 41 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQID--GPTLRTLCMQH--GPLVSFHPYL 41 (89)
T ss_dssp CCCCEEEEECCCTTCC--CHHHHHHHHHH--SCEEEEEEET
T ss_pred CccceEEEeCCCccCC--HHHHHHHHHhh--CCEEEEEEcC
Confidence 4578999999999885 68999999997 5699998865
No 193
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=77.59 E-value=2.8 Score=37.39 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=29.4
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCC
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPL 383 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~ 383 (807)
..|.|||+|++..+|+.|++.+.... +++..+.|+.|-.
T Consensus 72 ~kg~aFV~f~~~~~A~~Ai~~lng~~--------------~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 72 PRNCAFVTYEKMESADQAVAELNGTQ--------------VESVQLKVNIARK 110 (121)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCB--------------CSSCBCEEEECCS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCE--------------ECCeEEEEEEeCC
Confidence 46899999999999999998876542 1445567777743
No 194
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=77.46 E-value=0.6 Score=40.72 Aligned_cols=27 Identities=33% Similarity=0.382 Sum_probs=22.5
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhh
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYK 220 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~ 220 (807)
...++|.|.|||.+.. +++|+++|+.+
T Consensus 9 ~~~~~l~V~nLp~~~t--e~~l~~~F~~~ 35 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCT--MEDVLNFFSDC 35 (107)
T ss_dssp SSCCEEEEECCCSSCC--SHHHHHHTTTS
T ss_pred CCccEEEEeCCCCCCC--HHHHHHHHHhc
Confidence 3579999999999885 57899999764
No 195
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=77.42 E-value=2.2 Score=41.62 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=31.8
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
..+||.|.|+|.+.. ++.|+++|+++ |.|.+|.+.+|
T Consensus 108 ~~~~l~V~nLp~~~t--~~~L~~~F~~~--G~v~~v~i~~~ 144 (193)
T 2voo_A 108 KNRSVYIKGFPTDAT--LDDIKEWLEDK--GQVLNIQMRRT 144 (193)
T ss_dssp HHTEEEEECCCTTCC--HHHHHHHHTTS--CCEEEEEEEEC
T ss_pred ccCEEEecCCCCcCC--HHHHHHHHhcC--CCEEEEEEEEC
Confidence 479999999999874 68999999985 67999998865
No 196
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=77.20 E-value=1.9 Score=35.71 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=27.7
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCC
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAP 382 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP 382 (807)
+..|.|||+|++..+|+.|+ .+.... +++..++|+.|-
T Consensus 46 ~~~g~afV~f~~~~~a~~a~-~~~g~~--------------~~g~~l~V~~a~ 83 (89)
T 3ucg_A 46 HPKGFAYIEFSDKESVRTSL-ALDESL--------------FRGRQIKVIPKR 83 (89)
T ss_dssp SCCEEEEEEESSTHHHHHHG-GGTTCE--------------ETTEECEEEETT
T ss_pred CcceEEEEEECCHHHHHHHH-hcCCCE--------------ECCcEEEEEEcc
Confidence 45789999999999999998 554331 144566777774
No 197
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=77.18 E-value=1.4 Score=38.26 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=18.3
Q ss_pred CCCeeEEEEcCHHHHHHHHH
Q 044501 331 GAGVAFVMFKDVYTANKAVQ 350 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q 350 (807)
..|.|||+|++..+|+.|++
T Consensus 54 ~~G~afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 54 RRGDALIEMESEQDVQKALE 73 (107)
T ss_dssp TCSEEEEEBSSHHHHHHHHT
T ss_pred EeeEEEEEECCHHHHHHHHH
Confidence 45899999999999999998
No 198
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.13 E-value=1.8 Score=35.48 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=19.5
Q ss_pred CCeeEEEEcCHHHHHHHHHHh
Q 044501 332 AGVAFVMFKDVYTANKAVQDF 352 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~ 352 (807)
.|.|||+|++..+|..|.+.+
T Consensus 48 kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 48 QQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp GTEEEEEESSHHHHHHHHHTT
T ss_pred CCEEEEEECCHHHHHHHHHHh
Confidence 589999999999999999976
No 199
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=77.09 E-value=3.6 Score=38.02 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=33.6
Q ss_pred CCcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 189 ANSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 189 ~~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
......++|.|.|+|.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 83 ~~~~~~~~l~v~nl~~~~t--~~~l~~~f~~~--G~i~~~~i~~~ 123 (167)
T 1fxl_A 83 SASIRDANLYVSGLPKTMT--QKELEQLFSQY--GRIITSRILVD 123 (167)
T ss_dssp CGGGTTCEEEEESCCTTCC--HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred cccCCCCcEEECCCCCcCC--HHHHHHHHHhc--CCEeEEEEEec
Confidence 3455689999999999884 68999999986 57999888765
No 200
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.00 E-value=1.5 Score=37.26 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=21.9
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
+..|.|||+|++..+|+.|++.+...
T Consensus 50 ~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (99)
T 2div_A 50 IPAGYCFVEFADLATAEKCLHKINGK 75 (99)
T ss_dssp CEEEEEEEECSCHHHHHHHHHTTTTS
T ss_pred CcCCEEEEEeCCHHHHHHHHHHHcCC
Confidence 34589999999999999999977653
No 201
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.91 E-value=1.7 Score=37.96 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=28.8
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeC
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERA 381 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~A 381 (807)
..|.|||+|++..+|..|++.+.... +++..+.|+.|
T Consensus 68 ~kg~afV~f~~~~~A~~Ai~~l~g~~--------------~~g~~l~V~~a 104 (109)
T 2err_A 68 SKGFGFVTFENSADADRAREKLHGTV--------------VEGRKIEVNNA 104 (109)
T ss_dssp CTTEEEEECCCSHHHHHHHHHHTTCE--------------ETTEECEEEEC
T ss_pred CceEEEEEECCHHHHHHHHHHcCCCE--------------ECCEEEEEEEC
Confidence 57899999999999999999776542 14456677777
No 202
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=76.80 E-value=3.9 Score=37.72 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=33.2
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
.....++|.|.|+|.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 83 ~~~~~~~l~v~nl~~~~t--~~~l~~~f~~~--G~i~~~~i~~~ 122 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVD--DETLRNAFKDF--PSYLSGHVMWD 122 (166)
T ss_dssp CCTTCEEEEEESCCTTCC--HHHHHHHHTTS--TTEEEEEEEEC
T ss_pred CCCCCceEEECCCCCCCC--HHHHHHHHhcc--CCeeEEEEEec
Confidence 445689999999999884 68999999875 67999988765
No 203
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.72 E-value=2 Score=37.80 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=20.5
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhh
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFR 353 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~ 353 (807)
..|.|||+|++..+|+.|++.+.
T Consensus 51 ~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 51 PKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp TTSEEEECCSSHHHHHHHHHHSE
T ss_pred cccEEEEEECCHHHHHHHHHhhh
Confidence 46899999999999999999873
No 204
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.71 E-value=2.5 Score=37.40 Aligned_cols=46 Identities=15% Similarity=0.053 Sum_probs=31.6
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCCCCee
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLATDIY 388 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P~DIi 388 (807)
..|.|||+|++..+|..|.+.+...... +++..+.|+.|-...++.
T Consensus 61 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~------------l~Gr~l~V~~a~~~~~~~ 106 (112)
T 1x4f_A 61 MKSQAFIEMETREDAMAMVDHCLKKALW------------FQGRCVKVDLSEKYKKLV 106 (112)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHHHSCCC------------SSSSCCEEEEECSCSSSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCce------------ECCEEEEEEECccccccc
Confidence 3589999999999999999987643211 134556677775544443
No 205
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.56 E-value=2 Score=36.84 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.3
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
+..|.|||+|++..+|..|++.+...
T Consensus 49 ~~~g~afV~f~~~~~a~~A~~~l~g~ 74 (104)
T 2dhg_A 49 VSKGYGFVKFTDELEQKRALTECQGA 74 (104)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CccceEEEEECCHHHHHHHHHHccCC
Confidence 35689999999999999999977654
No 206
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=76.39 E-value=1.3 Score=40.76 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=29.1
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
...+||.|.|||.+.. +++|+++|+++ | +.+|.+++|
T Consensus 44 ~~~~~lfV~nLp~~~t--e~dL~~~F~~~--G-i~~v~i~~d 80 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKAT--ENDIYNFFSPL--N-PVRVHIEIG 80 (139)
T ss_dssp -CCCCEECCSCCTTCC--HHHHHHHHCSC--C-CSEEECCCS
T ss_pred CCCCEEEEeCCCCCCC--HHHHHHHHHhc--C-CeEEEEEEC
Confidence 4578999999999885 78999999985 3 557776654
No 207
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=76.30 E-value=1.5 Score=40.28 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=30.6
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCc---EEEEEeecCc
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGK---VYKVIMPMDL 234 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~---V~~V~v~~d~ 234 (807)
...++|.|.|||.+.. +++|+++|+++ |. |.+|.+++|-
T Consensus 42 ~~~~~lfVgnLp~~~t--e~dL~~~F~~~--G~v~~v~~v~i~~d~ 83 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCS--VEDVQNFLSDC--TIHDGAAGVHFIYTR 83 (136)
T ss_dssp CTTCEEEEESCCTTCC--HHHHHHHTTTC--CCSSSSTTEEEEECS
T ss_pred CCCCEEEEeCCCCCCC--HHHHHHHHHHh--CCcCceeEEEEEECC
Confidence 3479999999999885 68999999985 34 6777766543
No 208
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=76.18 E-value=0.6 Score=42.97 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.6
Q ss_pred CCCCCeeEEEEcCHHHHHHHHH
Q 044501 329 APGAGVAFVMFKDVYTANKAVQ 350 (807)
Q Consensus 329 ~~~~~~aFVtF~s~~~a~~a~q 350 (807)
.++.|.|||+|++..+|+.|++
T Consensus 85 g~srG~aFV~F~~~e~a~~Al~ 106 (136)
T 2hgl_A 85 GRQSGEAFVELGSEDDVKMALK 106 (136)
T ss_dssp SCEEEEEEEECSSHHHHHHHHT
T ss_pred CCCCeEEEEEECCHHHHHHHHh
Confidence 3457899999999999999998
No 209
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=75.94 E-value=1.2 Score=35.63 Aligned_cols=22 Identities=23% Similarity=0.455 Sum_probs=19.6
Q ss_pred CCCCeeEEEEcCHHHHHHHHHH
Q 044501 330 PGAGVAFVMFKDVYTANKAVQD 351 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~ 351 (807)
++.|.|||+|++..+|+.|.+.
T Consensus 39 ~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 39 KRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp SSCCCEEEECSSSHHHHHHHTT
T ss_pred CcCCEEEEEECCHHHHHHHHHh
Confidence 4578999999999999999984
No 210
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=75.32 E-value=1.8 Score=36.99 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.7
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
..|.|||+|++..+|..|.+.+...
T Consensus 62 ~~g~afV~f~~~~~A~~Ai~~l~g~ 86 (101)
T 2la4_A 62 EKGCCFIKYDTHEQAAVCIVALANF 86 (101)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 4689999999999999999877643
No 211
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=74.80 E-value=4.6 Score=34.87 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=22.0
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
..|.|||+|++..+|..|.+.+...
T Consensus 56 ~kg~AFVef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 56 KKRQALVEFEDVLGACNAVNYAADN 80 (100)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCC
Confidence 4589999999999999999988754
No 212
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.72 E-value=3.6 Score=35.52 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.4
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhh
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRN 354 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~ 354 (807)
.|.|||+|++..+|..|.+.+..
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~ 73 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSA 73 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhcc
Confidence 58999999999999999987654
No 213
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=74.49 E-value=3.1 Score=39.83 Aligned_cols=38 Identities=21% Similarity=0.396 Sum_probs=31.6
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
...++|.|.|||.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 102 ~~~~~l~V~nLp~~~t--~~~l~~~F~~~--G~i~~v~i~~~ 139 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTE--EHHLRDYFEQY--GKIEVIEIMTD 139 (196)
T ss_dssp -CCSEEEEECCTTTCC--HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCcceEEEeCCCCCCC--HHHHHHHHhcC--CCeEEEEEeec
Confidence 3469999999999874 68999999975 67999988765
No 214
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.34 E-value=1.4 Score=37.39 Aligned_cols=28 Identities=18% Similarity=0.212 Sum_probs=23.9
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhh
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYK 220 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~ 220 (807)
....++|.|.|||.+.. +++|+++|+++
T Consensus 12 ~~~~~~l~v~nLp~~~t--~~~l~~~F~~~ 39 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVS--IDEILDFFYGY 39 (98)
T ss_dssp CCSSEEEEEESCCTTCC--HHHHHHHTTTS
T ss_pred CCCCCEEEEeCCCCCCC--HHHHHHHHHHc
Confidence 34579999999999885 68999999986
No 215
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.21 E-value=2.7 Score=36.69 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
+..+.|||+|++..+|+.|++.+...
T Consensus 54 ~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (114)
T 2do0_A 54 KSRGIGTVTFEQSIEAVQAISMFNGQ 79 (114)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 34689999999999999999977654
No 216
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=74.09 E-value=1.6 Score=36.10 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=19.3
Q ss_pred CCCCeeEEEEcCHHHHHHHHHH
Q 044501 330 PGAGVAFVMFKDVYTANKAVQD 351 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~ 351 (807)
+..|.|||+|++..+|+.|++.
T Consensus 51 ~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 51 RSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp CEEEEEEEEESSTHHHHHHHHS
T ss_pred ccccEEEEEECCHHHHHHHHHh
Confidence 4568999999999999999975
No 217
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.02 E-value=2.7 Score=34.44 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.6
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
+..|.|||+|++..+|+.|++.+...
T Consensus 45 ~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (85)
T 1x4e_A 45 KCKGYGFVDFDSPSAAQKAVTALKAS 70 (85)
T ss_dssp SCCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred CcCcEEEEEECCHHHHHHHHHHhcCC
Confidence 45689999999999999999987664
No 218
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.87 E-value=4.2 Score=35.23 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.0
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
.|.|||+|++..+|..|.+.+...
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~ 74 (104)
T 1wex_A 51 KRQALVEFENIDSAKECVTFAADV 74 (104)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCEEEEEECCHHHHHHHHHHhccC
Confidence 589999999999999999977543
No 219
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=73.84 E-value=1.7 Score=35.44 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.0
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
++.|.|||+|++..+|+.|.+.+...
T Consensus 45 ~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 45 KTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp BCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred cEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 45689999999999999999876543
No 220
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=73.42 E-value=1.9 Score=35.80 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=27.5
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEe
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIM 230 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v 230 (807)
..+||.|.|||.+.. +++|+++|+++ .|.++.+
T Consensus 4 ~~~~l~V~nLp~~~t--~~~l~~~F~~~---~v~~~~i 36 (88)
T 1wg1_A 4 GSSGILVKNLPQDSN--CQEVHDLLKDY---DLKYCYV 36 (88)
T ss_dssp CCCCEEEESCCSSCC--HHHHHHHTCSS---CCCCEEE
T ss_pred CCCEEEEeCCCCCCC--HHHHHHHHhhC---CeEEEEE
Confidence 369999999999885 68999999986 4777766
No 221
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=73.31 E-value=6.2 Score=36.91 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=40.0
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCCC--------CCeeeCCcccCcchhHHH
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPLA--------TDIYWNHLGLTKLSLRLR 402 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~P--------~DIiW~NL~~~~~~r~~R 402 (807)
..|.|||+|.+..+|+.|++ +.... +.+..+.|+.|... .-|.=.||..+..+.-++
T Consensus 53 ~~g~afV~f~~~~~a~~A~~-l~g~~--------------~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~ 117 (175)
T 1fje_B 53 NRKFGYVDFESAEDLEKALE-LTGLK--------------VFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELK 117 (175)
T ss_dssp TTTEEEEEESSHHHHHHHHH-GGGEE--------------ETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHH
T ss_pred cccEEEEEECCHHHHHHHHh-cCCCE--------------eCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHH
Confidence 35899999999999999995 43321 13344566665432 346667777666666666
Q ss_pred HHHH
Q 044501 403 RVLV 406 (807)
Q Consensus 403 ~~~~ 406 (807)
.++.
T Consensus 118 ~~F~ 121 (175)
T 1fje_B 118 EVFE 121 (175)
T ss_dssp HHCT
T ss_pred HHHH
Confidence 6543
No 222
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.64 E-value=2.5 Score=36.17 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.2
Q ss_pred CCCCeeEEEEcCHHHHHHHHHH
Q 044501 330 PGAGVAFVMFKDVYTANKAVQD 351 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~ 351 (807)
+..|.|||+|++..+|+.|++.
T Consensus 55 ~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 55 HSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp SEEEEEEEEESSHHHHHHHHHS
T ss_pred CccceEEEEECCHHHHHHHHHc
Confidence 3467999999999999999984
No 223
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=72.63 E-value=2.2 Score=38.09 Aligned_cols=38 Identities=18% Similarity=0.101 Sum_probs=29.3
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCCC
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAPL 383 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP~ 383 (807)
.|.|||+|++..+|..|.+.+.... +++..++++.+|+
T Consensus 71 ~G~~FV~F~~~e~A~~Ai~~LnGr~--------------f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 71 IVKIFVEFSIASETHKAIQALNGRW--------------FAGRKVVAEVYDQ 108 (118)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCE--------------ETTEECEEEEECH
T ss_pred eEEEEEEECCHHHHHHHHHHHCCCE--------------ECCcEEEEEEcCh
Confidence 4899999999999999999987642 1455566777653
No 224
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.24 E-value=3.9 Score=35.43 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.1
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
.+.|||+|++..+|..|.+.+...
T Consensus 52 kg~aFVef~~~~~A~~Ai~~l~~~ 75 (102)
T 1x4d_A 52 INEAFIEMATTEDAQAAVDYYTTT 75 (102)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHS
T ss_pred CCEEEEEECCHHHHHHHHHHHcCC
Confidence 478999999999999999987653
No 225
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.05 E-value=3.6 Score=34.77 Aligned_cols=30 Identities=10% Similarity=0.086 Sum_probs=25.1
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhC
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKY 221 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~ 221 (807)
.....+||.|.|||.+.. +++|+++|+++.
T Consensus 15 ~~~~~~~l~V~nL~~~~t--~~~l~~~F~~~G 44 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDAR--VSDLKRALRELG 44 (97)
T ss_dssp SSCCCCEEEEECCCTTCC--HHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCcCc--HHHHHHHHHhcC
Confidence 345589999999999885 689999999864
No 226
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.07 E-value=4.3 Score=36.23 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.5
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhh
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRN 354 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~ 354 (807)
.|.|||+|++..+|..|.+.+..
T Consensus 67 kG~AFVeF~~~e~A~~Ai~~l~~ 89 (119)
T 2ad9_A 67 KNQAFIEMNTEEAANTMVNYYTS 89 (119)
T ss_dssp GTEEEEECSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhcc
Confidence 48999999999999999987754
No 227
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.93 E-value=4.5 Score=35.42 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=19.4
Q ss_pred CCCCCeeEEEEcCHHHHHHHHH
Q 044501 329 APGAGVAFVMFKDVYTANKAVQ 350 (807)
Q Consensus 329 ~~~~~~aFVtF~s~~~a~~a~q 350 (807)
.++.|.|||+|++..+|+.|++
T Consensus 53 g~~~G~afV~F~~~~~a~~Al~ 74 (109)
T 2dnn_A 53 GRNNGNGLVKFLSPQDTFEALK 74 (109)
T ss_dssp CCCCSEEEEECSSHHHHHHHHH
T ss_pred CCCCeEEEEEECCHHHHHHHHh
Confidence 3467999999999999999985
No 228
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=70.73 E-value=4.4 Score=35.17 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.5
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDF 352 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~ 352 (807)
+..|.|||+|++..+|..|++..
T Consensus 65 ~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 65 RSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp CCTTCEEEEESSHHHHHHHHHSS
T ss_pred CcCcEEEEEECCHHHHHHHHHHC
Confidence 45789999999999999999875
No 229
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=70.52 E-value=3 Score=38.14 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.8
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
..|.|||+|.+..+|..|++.+...
T Consensus 91 ~~g~afV~f~~~~~A~~Ai~~lng~ 115 (143)
T 3egn_A 91 MKGQAFIGLPNEKAAAKALKEANGY 115 (143)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHTTB
T ss_pred cccEEEEEeCCHHHHHHHHHHhCCC
Confidence 3589999999999999999987654
No 230
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.19 E-value=4.7 Score=35.69 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=30.6
Q ss_pred cccceeEEE--ecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeec
Q 044501 191 STAIFTIMV--QGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 191 ~~~~rTVlV--~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~ 232 (807)
....+++.| -|+|.+.. +++|+++|+++ |.|.+|.+..
T Consensus 22 ~~pt~~L~V~Ng~L~~~~t--e~~L~~~F~~f--G~v~~v~i~~ 61 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVS--RNQLLPVLEKC--GLVDALLMPP 61 (114)
T ss_dssp SSCCSEEEEETCTGGGTCC--HHHHHHHHHHH--SCEEEEECCT
T ss_pred CCCCCEEEEECCCCCCCCC--HHHHHHHHHhc--CCeEEEEEeC
Confidence 345789999 55998874 68999999997 5799998763
No 231
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.94 E-value=3.3 Score=36.22 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.7
Q ss_pred CCCCeeEEEEcCHHHHHHHHHH
Q 044501 330 PGAGVAFVMFKDVYTANKAVQD 351 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~ 351 (807)
+..|.|||+|++..+|+.|++.
T Consensus 67 ~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 67 RSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp SCCSEEEEECSSHHHHHHHHTS
T ss_pred CcCceEEEEeCCHHHHHHHHHh
Confidence 4568999999999999999986
No 232
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.42 E-value=4.9 Score=34.05 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=24.3
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhh
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYK 220 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~ 220 (807)
.....+||.|.|||.+.. +++|+++|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t--~~~l~~~F~~~ 39 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSAT--EETLQEVFEKA 39 (101)
T ss_dssp CSCCCSEEEEESCCTTCC--HHHHHHHCSSC
T ss_pred CCCCCCEEEEeCCCCCCC--HHHHHHHHHhC
Confidence 345689999999999874 68999999874
No 233
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=69.21 E-value=4 Score=36.13 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=27.5
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCC
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAP 382 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP 382 (807)
+..|.|||+|++..+|..|+ .+.... +++..+.|+.|-
T Consensus 76 ~~~g~afV~f~~~~~a~~A~-~l~g~~--------------~~g~~l~V~~a~ 113 (124)
T 2jwn_A 76 HPKGYAYIEFAERNSVDAAV-AMDETV--------------FRGRTIKVLPKR 113 (124)
T ss_dssp SCEEEEEEEESSHHHHHHHH-TTTTCE--------------ETTEECEEEESS
T ss_pred CcccEEEEEECCHHHHHHHH-hcCCCe--------------ECCeEEEEEECC
Confidence 45789999999999999999 444321 144556777774
No 234
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=68.86 E-value=5.5 Score=37.72 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.2
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
.+.|||+|++..+|..|.+.+...
T Consensus 84 rgfAFVeF~d~~~A~~Ai~~LnG~ 107 (164)
T 1sjr_A 84 QFQALLQYADPVSAQHAKLSLDGQ 107 (164)
T ss_dssp CEEEEEEESCHHHHHHHHHHSTTB
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 368999999999999999988765
No 235
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.51 E-value=2.5 Score=37.04 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=19.7
Q ss_pred CCCCeeEEEEcCHHHHHHHHHH
Q 044501 330 PGAGVAFVMFKDVYTANKAVQD 351 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~ 351 (807)
+..|.|||+|++..+|+.|++.
T Consensus 55 ~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 55 QGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp SCSSCEEEECSSHHHHHHHGGG
T ss_pred CcceEEEEEECCHHHHHHHHHh
Confidence 4679999999999999999876
No 236
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=68.49 E-value=4.4 Score=37.98 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=30.6
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCC
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAP 382 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP 382 (807)
+..|.|||+|++..+|..|++.+.... +++..+.|+.|.
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~~--------------~~g~~i~v~~a~ 172 (175)
T 1fje_B 134 KSKGIAYIEFKSEADAEKNLEEKQGAE--------------IDGRSVSLYYTG 172 (175)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHTEEE--------------ETTEEEEEEECS
T ss_pred CCceEEEEEECCHHHHHHHHHHhCCCE--------------ECCeEEEEEecC
Confidence 467999999999999999999876542 145567888873
No 237
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.18 E-value=2.9 Score=35.11 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=18.0
Q ss_pred eeEEEEcCHHHHHHHHHHhhh
Q 044501 334 VAFVMFKDVYTANKAVQDFRN 354 (807)
Q Consensus 334 ~aFVtF~s~~~a~~a~q~~~~ 354 (807)
.|||+|.+..+|+.|++ +..
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g 66 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQ 66 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSC
T ss_pred EEEEEECCHHHHHHHHh-cCC
Confidence 89999999999999998 544
No 238
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.11 E-value=2.6 Score=36.84 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=20.3
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRN 354 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~ 354 (807)
+..|.|||+|++..+|+.|+ .+..
T Consensus 65 ~~~g~afV~f~~~~~a~~A~-~l~g 88 (114)
T 2cq4_A 65 RSKGIAYVEFCEIQSVPLAI-GLTG 88 (114)
T ss_dssp SCCCCEEEEESCGGGHHHHH-HHTT
T ss_pred ccCcEEEEEeCcHHHHHHHH-HcCC
Confidence 45689999999999999999 6544
No 239
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=67.94 E-value=6.9 Score=37.35 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=32.0
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
...++|.|.|+|.+.. +++|+++|+++ |.|.+|.+.+|
T Consensus 112 ~~~~~l~v~nl~~~~~--~~~l~~~f~~~--G~v~~~~~~~~ 149 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLN--DDQVKELLTSF--GPLKAFNLVKD 149 (198)
T ss_dssp CCCCEEEEECCCTTCC--HHHHHHHHHTB--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC--HHHHHHHHHHc--CCccEEEEeec
Confidence 4579999999999874 68999999986 57999987765
No 240
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=67.49 E-value=4.7 Score=35.46 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=29.7
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
..++|.|.|||.+.. +++|+++|++..+ .|..+.+.
T Consensus 27 ~~~~l~VgnLp~~~t--e~dL~~~F~~~G~-~v~~v~i~ 62 (111)
T 2jvr_A 27 KRYRITMKNLPEGCS--WQDLKDLARENSL-ETTFSSVN 62 (111)
T ss_dssp CCEEEEEECSSCCCC--HHHHHHHHHHHTC-CCSEEECS
T ss_pred CCCEEEEECCCCCCC--HHHHHHHHHHhCC-eeEEEEEE
Confidence 478999999999875 6899999998732 68888775
No 241
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.09 E-value=3.5 Score=35.65 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.2
Q ss_pred CCCCeeEEEEcCHHHHHHHHH
Q 044501 330 PGAGVAFVMFKDVYTANKAVQ 350 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q 350 (807)
.+.|.|||+|++..+|+.|++
T Consensus 50 ~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 50 AFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp SCCCEEEEEESSHHHHHHHHT
T ss_pred CCccEEEEEECCHHHHHHHHH
Confidence 457999999999999999998
No 242
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.98 E-value=2.1 Score=36.90 Aligned_cols=21 Identities=29% Similarity=0.096 Sum_probs=18.8
Q ss_pred CCCCeeEEEEcCHHHHHHHHH
Q 044501 330 PGAGVAFVMFKDVYTANKAVQ 350 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q 350 (807)
++.|.|||+|++..+|+.|++
T Consensus 53 ~~~G~afV~F~~~~~a~~Al~ 73 (102)
T 1wez_A 53 RVTGEADVEFATHEDAVAAMA 73 (102)
T ss_dssp CEEEEEEEECSSSHHHHHHHT
T ss_pred CEeeEEEEEECCHHHHHHHHH
Confidence 456899999999999999995
No 243
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=66.70 E-value=2.4 Score=37.59 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.6
Q ss_pred CCCCCeeEEEEcCHHHHHHHHH
Q 044501 329 APGAGVAFVMFKDVYTANKAVQ 350 (807)
Q Consensus 329 ~~~~~~aFVtF~s~~~a~~a~q 350 (807)
.+..|.|||+|++..+|+.|++
T Consensus 58 g~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 58 GRQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp SCEEEEEEEEBSSHHHHHHHGG
T ss_pred CCCCeEEEEEECCHHHHHHHHh
Confidence 3457899999999999999998
No 244
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.41 E-value=2.8 Score=35.94 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.5
Q ss_pred CCCCeeEEEEcCHHHHHHHHHH
Q 044501 330 PGAGVAFVMFKDVYTANKAVQD 351 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~ 351 (807)
+..|.|||+|++..+|+.|++.
T Consensus 56 ~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 56 QSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp CEEEEEEEEESSTTHHHHHHHH
T ss_pred CcceEEEEEECCHHHHHHHHHh
Confidence 3458999999999999999987
No 245
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=69.83 E-value=1.2 Score=39.24 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=24.9
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEE
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYK 227 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~ 227 (807)
..++|.|.|||.+.. +++|+++|+++ |.|.+
T Consensus 6 ~~~~l~V~nLp~~~t--~~~l~~~F~~~--G~i~~ 36 (116)
T 2lcw_A 6 DNNTIFVQGLGENVT--IESVADYFKQI--GIIKT 36 (116)
Confidence 479999999999885 57899999875 44554
No 246
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.23 E-value=9.1 Score=33.08 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=30.1
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhh---CCCcEEEEEeec
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYK---YPGKVYKVIMPM 232 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~---~pg~V~~V~v~~ 232 (807)
-...+|.|+|+|++.. ++.|+-|||+- ..|.|.+|....
T Consensus 6 ~~~~~I~V~~lPp~~~--~e~L~LYFEn~rrsGGG~V~~v~~~~ 47 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVP--DELLTLYFENRRRSGGGPVLSWQRLG 47 (104)
T ss_dssp CCCCEEEEESCCTTSC--HHHHHHHHHCTTTTCCCCEEEEEEET
T ss_pred cCccEEEEECCCCCCC--hhHheEEEeCCCcCCCceeeEEEEcC
Confidence 3478999999999874 57999999982 345688876554
No 247
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=65.16 E-value=7.1 Score=39.88 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=31.6
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeec
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~ 232 (807)
....+||.|.|||.+.. +++|+++|+++ |.|.+|.+..
T Consensus 204 ~~~~~~l~v~nl~~~~~--~~~l~~~F~~~--G~i~~v~~~~ 241 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETN--ELMLSMLFNQF--PGFKEVRLVP 241 (282)
T ss_pred CCCCCEEEEeCCCCcCC--HHHHHHHHHhc--CCeEEEEEec
Confidence 34579999999999874 68999999985 6799988774
No 248
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=65.04 E-value=12 Score=34.75 Aligned_cols=25 Identities=12% Similarity=0.336 Sum_probs=21.8
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhh
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYK 220 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~ 220 (807)
++||.|.|||.+.. +++|+++|+++
T Consensus 4 ~~~l~V~nLp~~~t--~~~l~~~F~~~ 28 (172)
T 2g4b_A 4 ARRLYVGNIPFGIT--EEAMMDFFNAQ 28 (172)
T ss_dssp GGEEEEESCCTTCC--HHHHHHHHHHH
T ss_pred ccEEEEcCCCcccC--HHHHHHHHHHH
Confidence 69999999999884 68999999864
No 249
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=65.02 E-value=4.6 Score=33.01 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=19.7
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhh
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRN 354 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~ 354 (807)
..|.|||+|++..+|+.|. .+..
T Consensus 52 ~kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 52 DKNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp SSSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCcEEEEEcCCHHHHHHHH-hcCC
Confidence 3699999999999999999 6544
No 250
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=64.45 E-value=4.6 Score=35.47 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=21.0
Q ss_pred CeeEEEEcCHHHHHHHHHHhhhh
Q 044501 333 GVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 333 ~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
+.|||+|++..+|+.|++.+...
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~ 74 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNT 74 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 99999999999999999987664
No 251
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=64.35 E-value=3.4 Score=37.26 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.7
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
+..|.|||+|++. +|..|++.+...
T Consensus 65 ~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 65 LNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp SBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CcceEEEEEECCH-HHHHHHHHhcCC
Confidence 4568999999999 999999988764
No 252
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.34 E-value=7.2 Score=33.85 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=21.7
Q ss_pred CCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 331 GAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
..|.|||+|++..+|+.|++.+...
T Consensus 65 ~~g~afV~f~~~~~a~~A~~~l~g~ 89 (114)
T 1x5o_A 65 SRGVGFARMESTEKCEAVIGHFNGK 89 (114)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHBTC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCC
Confidence 4579999999999999999977654
No 253
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.69 E-value=4.6 Score=35.75 Aligned_cols=24 Identities=8% Similarity=0.234 Sum_probs=21.7
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
.|.|||+|++..+|+.|.+.+...
T Consensus 63 rgfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 63 KPYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp CSCEEEEESSHHHHHHHHHHTTTC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 589999999999999999988765
No 254
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.36 E-value=2.4 Score=37.80 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=21.7
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhh
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYK 220 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~ 220 (807)
..++|.|.|||.+.. +++|+++|+++
T Consensus 24 ~~~~l~V~nLp~~~t--e~~l~~~F~~~ 49 (124)
T 1wel_A 24 AGFCVYLKGLPFEAE--NKHVIDFFKKL 49 (124)
T ss_dssp CCCEEEEECCCTTCC--HHHHHHHSCSS
T ss_pred CCcEEEEeCCCCCCC--HHHHHHHHHhc
Confidence 468999999999875 68899999764
No 255
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.24 E-value=2.2 Score=37.32 Aligned_cols=28 Identities=7% Similarity=0.051 Sum_probs=23.8
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhh
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYK 220 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~ 220 (807)
....+||.|.|||.+.. +++|+++|+++
T Consensus 22 ~~~~~~l~V~nLp~~~t--~~~l~~~f~~~ 49 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVT--ERDLVSLFARF 49 (115)
T ss_dssp CSCCSEEEEECCCTTCC--HHHHHHHTHHH
T ss_pred CCCCCEEEEeCCCCCCC--HHHHHHHHHHh
Confidence 34579999999999875 68999999986
No 256
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=62.78 E-value=12 Score=33.70 Aligned_cols=38 Identities=5% Similarity=0.235 Sum_probs=29.2
Q ss_pred cccceeEEEecCCCCCCCCHHHH----HHHHhhhCCCcEEEEEeec
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIV----EEYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L----~~~F~~~~pg~V~~V~v~~ 232 (807)
....+||.|.|||.+.. +++| +++|+++ |.|.+|.+.+
T Consensus 26 ~~p~~~LfV~nL~~~~~--e~~L~~~L~~~F~~~--G~I~~v~i~~ 67 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVP--KEKLQALLYALASSQ--GDILDIVVDL 67 (127)
T ss_dssp CSCCSEEEEESCCTTSC--HHHHHHHHHHHHHHH--SCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCC--HHHHHHHHHHHhccC--CCeEEEEecc
Confidence 44579999999999875 4554 4789887 6798888754
No 257
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=62.44 E-value=10 Score=36.21 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.1
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
.|.|||+|.+..+|+.|.+.+...
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~ 64 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGH 64 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 589999999999999999977654
No 258
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=66.30 E-value=1.6 Score=38.40 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=21.9
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
+..|.|||+|++..+|+.|++.+...
T Consensus 55 ~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 55 KLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 34689999999999999999876554
No 259
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=61.39 E-value=6.5 Score=32.86 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=24.3
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhh
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYK 220 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~ 220 (807)
.....+||.|.|||.+.. +++|+++|+++
T Consensus 12 ~~~~~~~l~V~nL~~~~t--~~~l~~~F~~~ 40 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNIT--EDELKEVFEDA 40 (96)
T ss_dssp TTTGGGEEEEESCCSSCC--HHHHHHHHCSE
T ss_pred cCCCCCEEEEeCCCCCCC--HHHHHHHHhhC
Confidence 345689999999999885 68999999874
No 260
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.60 E-value=6 Score=34.44 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.6
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhh
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRN 354 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~ 354 (807)
.|.|||+|++..+|..|.+.+..
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEEECCHHHHHHHHHHhcc
Confidence 58999999999999999997754
No 261
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.42 E-value=7.8 Score=32.16 Aligned_cols=28 Identities=7% Similarity=0.189 Sum_probs=23.9
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhC
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKY 221 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~ 221 (807)
...+||.|.|||.+.. +++|+++|+++.
T Consensus 6 ~~~~~l~V~nLp~~~t--~~~l~~~F~~~G 33 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVT--ADDLRQLFGDRK 33 (93)
T ss_dssp CCCCCEEEECCCTTCC--HHHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCCCC--HHHHHHHHHHcC
Confidence 3479999999999885 689999999864
No 262
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.59 E-value=3.4 Score=36.77 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.3
Q ss_pred CCeeEEEEcCHHHHHHHHH
Q 044501 332 AGVAFVMFKDVYTANKAVQ 350 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q 350 (807)
.|.|||+|++..+|..|++
T Consensus 67 ~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 67 TGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp EEEEEEEBSSSHHHHHHHT
T ss_pred CeEEEEEECCHHHHHHHHH
Confidence 3789999999999988888
No 263
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=59.58 E-value=12 Score=35.62 Aligned_cols=26 Identities=12% Similarity=0.314 Sum_probs=21.9
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhh
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYK 220 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~ 220 (807)
.++||.|.|||.+.. +++|+++|+++
T Consensus 3 ~~~~l~V~nLp~~~t--e~~l~~~F~~~ 28 (198)
T 2yh0_A 3 MARRLYVGNIPFGIT--EEAMMDFFNAQ 28 (198)
T ss_dssp -CCEEEEESCCTTCC--HHHHHHHHHHH
T ss_pred ceeEEEEcCCCCCCC--HHHHHHHHHHH
Confidence 379999999999884 68999999864
No 264
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=59.41 E-value=6.3 Score=38.61 Aligned_cols=37 Identities=11% Similarity=-0.070 Sum_probs=29.0
Q ss_pred cceeEEEecCCCCCCCCHHHHHHHHhhhCCCcE--EEEEeecC
Q 044501 193 AIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKV--YKVIMPMD 233 (807)
Q Consensus 193 ~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V--~~V~v~~d 233 (807)
..+||.|.|||.+.. +++|+++|+++ |.| .+|.+..|
T Consensus 122 p~~~l~v~NLp~~~t--~~~L~~~F~~~--G~v~~~~v~~~~~ 160 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVT--EENFFEICDEL--GVKRPTSVKVFSG 160 (205)
T ss_dssp CCSEEEEEEECTTCC--HHHHHHHHHHH--TCCCCSEEEECSC
T ss_pred CcceEEEeCCCCCCC--HHHHHHHHHhc--CCcceEEEEEEcC
Confidence 468999999999874 68999999986 456 67765543
No 265
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=58.31 E-value=10 Score=32.79 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=32.3
Q ss_pred cceeEEEecC--CCCCCCC------HHHHHHHHhhhCCCcEEEEEeecCcc
Q 044501 193 AIFTIMVQGL--PKSLGVD------KTIVEEYFQYKYPGKVYKVIMPMDLC 235 (807)
Q Consensus 193 ~~rTVlV~~I--P~~~~~d------~~~L~~~F~~~~pg~V~~V~v~~d~~ 235 (807)
.+++|.+.|+ |.++.+| +++|++.|+++ |.|.+|.+.+|..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~~ 52 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPVD 52 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCBT
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccCC
Confidence 4799999998 6777632 25899999876 6899999998863
No 266
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=58.10 E-value=9.5 Score=33.83 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=31.7
Q ss_pred cceeEEEecC--CCCCCC-CHHHHHHHHhhhCCCcEEEEEeecCcc
Q 044501 193 AIFTIMVQGL--PKSLGV-DKTIVEEYFQYKYPGKVYKVIMPMDLC 235 (807)
Q Consensus 193 ~~rTVlV~~I--P~~~~~-d~~~L~~~F~~~~pg~V~~V~v~~d~~ 235 (807)
.+++|.+.|+ |.++.+ -+++|++.|+++ |.|.+|.+++|..
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~--G~V~~v~I~~~~~ 62 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF--GAVNRVIIYQEKQ 62 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT--SCEEEEEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCEeEEEEeecCC
Confidence 4799999998 444442 257899999986 6899999998853
No 267
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.97 E-value=4.4 Score=33.44 Aligned_cols=18 Identities=33% Similarity=0.281 Sum_probs=15.3
Q ss_pred CCCeeEEEEcCHHHHHHH
Q 044501 331 GAGVAFVMFKDVYTANKA 348 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~a 348 (807)
..|.|||+|++..+|+.+
T Consensus 41 ~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp CCSCCEEECSCHHHHHHT
T ss_pred CCCEEEEEECCHHHHHHH
Confidence 468999999999999754
No 268
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=57.96 E-value=14 Score=31.97 Aligned_cols=40 Identities=13% Similarity=0.040 Sum_probs=30.8
Q ss_pred cceeEEEecCCC--CCC-CCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 193 AIFTIMVQGLPK--SLG-VDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 193 ~~rTVlV~~IP~--~~~-~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
.+++|.+.|+.. ++. ..+++|++.|+++ |.|.+|.+++|-
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~--G~V~~v~i~~~~ 49 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKY--GKVGKCVIFEIP 49 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGG--SCEEEEEEEECS
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhc--CCEEEEEEecCC
Confidence 479999999973 332 1468999999986 679999999874
No 269
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=57.80 E-value=8.8 Score=34.86 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=30.1
Q ss_pred eeEEEecC----CCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcc
Q 044501 195 FTIMVQGL----PKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLC 235 (807)
Q Consensus 195 rTVlV~~I----P~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~ 235 (807)
..|.|.|+ |.... ++.|++||+++ |.|.++.+..|-.
T Consensus 3 ~kI~VgnL~~~~~~~tt--e~~Lk~~Fs~f--GeV~~~~li~Dp~ 43 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQ--DISIKNYFKKY--GEISHFEAFNDPN 43 (136)
T ss_dssp CEEEEEESSSSCCCCCC--HHHHHHHHHTT--SCCSEEEEEECTT
T ss_pred cEEEEeCCCCCCCCCCC--HHHHHHHHHhc--CCeEEEEEEecCC
Confidence 57999999 98774 68999999986 5788888777743
No 270
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=57.57 E-value=4.1 Score=37.45 Aligned_cols=22 Identities=27% Similarity=0.104 Sum_probs=19.2
Q ss_pred CCCCCeeEEEEcCHHHHHHHHH
Q 044501 329 APGAGVAFVMFKDVYTANKAVQ 350 (807)
Q Consensus 329 ~~~~~~aFVtF~s~~~a~~a~q 350 (807)
.++.|.|||+|++..+|+.|++
T Consensus 83 g~srGfaFV~F~~~e~A~~Al~ 104 (139)
T 2hgn_A 83 GRVTGEADVEFATHEEAVAAMS 104 (139)
T ss_dssp SCSSCCCEEECSHHHHHHHHTT
T ss_pred CCCceEEEEEeCCHHHHHHHHh
Confidence 3567899999999999999983
No 271
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=57.51 E-value=15 Score=32.82 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.5
Q ss_pred C-eeEEEEcCHHHHHHHHHHhhhh
Q 044501 333 G-VAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 333 ~-~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
| .|||+|++..+|..|.+.+...
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~ 85 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGA 85 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 6 5999999999999999988764
No 272
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.12 E-value=7.4 Score=33.86 Aligned_cols=40 Identities=10% Similarity=0.183 Sum_probs=28.5
Q ss_pred CcccceeEEEecC--CCCCCCC-------HHHHHHHHhhhCCCcEEEEEee
Q 044501 190 NSTAIFTIMVQGL--PKSLGVD-------KTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 190 ~~~~~rTVlV~~I--P~~~~~d-------~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
....++||+|.|+ |.++..| +++|+++|+++ |.|.+|.+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i~ 59 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLLF 59 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEEE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEEe
Confidence 3446899999999 4333212 46899999986 678888663
No 273
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.25 E-value=9 Score=32.39 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=25.6
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeC
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERA 381 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~A 381 (807)
.+.+||||++..+|..|.+ +.... +.+..++|+.|
T Consensus 49 ~d~~fVtF~d~~sAlaAi~-mnG~~--------------v~Gr~LkV~lk 83 (91)
T 2dnr_A 49 EDKMWVTFLEGSSALNVLS-LNGKE--------------LLNRTITIALK 83 (91)
T ss_dssp SSSEEEEESSHHHHHHGGG-GTTCE--------------ETTEEEEEEEC
T ss_pred cCCEEEEECChHHHHHHHh-cCCeE--------------eCCeEEEEEeC
Confidence 4559999999999999987 43321 24566778887
No 274
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=54.15 E-value=14 Score=33.38 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=20.0
Q ss_pred eeEEEEcCHHHHHHHHHHhhhh
Q 044501 334 VAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 334 ~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
.|||+|++..+|+.|.+.+...
T Consensus 68 qAFVef~~~~~A~~Ai~~LnG~ 89 (130)
T 3zzy_A 68 QALLQYADPVSAQHAKLSLDGQ 89 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHTTC
T ss_pred EEEEEECCHHHHHHHHHHcCCC
Confidence 4999999999999999988765
No 275
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=53.87 E-value=11 Score=38.55 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=32.4
Q ss_pred ccceeEEEecCCCC-CCCCHHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 192 TAIFTIMVQGLPKS-LGVDKTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 192 ~~~rTVlV~~IP~~-~~~d~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
...++|.|.|+|.+ . ++++|+++|+.+ |.|.+|.+.+|.
T Consensus 208 ~~~~~l~v~nlp~~~~--t~~~l~~~F~~~--G~v~~v~i~~~~ 247 (292)
T 2ghp_A 208 LEGREIMIRNLSTELL--DENLLRESFEGF--GSIEKINIPAGQ 247 (292)
T ss_dssp CTTTEEEEEEECTTTC--CHHHHHHHHGGG--SCEEEEECCSCC
T ss_pred CCCceEEEECCCcccC--CHHHHHHHHhcc--CCeeEEEEEecC
Confidence 45799999999998 6 478999999986 679999887653
No 276
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=53.73 E-value=11 Score=37.96 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.6
Q ss_pred CCeeEEEEcCHHHHHHHHHHhhhh
Q 044501 332 AGVAFVMFKDVYTANKAVQDFRNE 355 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q~~~~~ 355 (807)
.|.|||+|++..+|+.|.+.+...
T Consensus 179 kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 179 KNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp GTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHhCCC
Confidence 589999999999999999988764
No 277
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=53.44 E-value=13 Score=37.73 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=31.4
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
.++|.|.|+|.+.. ++.|+++|+.+ |.|.+|.+.+|
T Consensus 96 ~~~l~v~nl~~~~t--~~~l~~~F~~~--G~i~~v~i~~~ 131 (261)
T 3sde_A 96 GAALTVKNLSPVVS--NELLEQAFSQF--GPVEKAVVVVD 131 (261)
T ss_dssp SSEEEEESCCTTCC--HHHHHHHHGGG--SCEEEEEEEEE
T ss_pred CCcccccCCCCCCC--HHHHHHHHHhc--CCeEEEEeeeC
Confidence 68999999999874 68999999986 57999998887
No 278
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=52.68 E-value=15 Score=34.64 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=29.5
Q ss_pred ceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 194 IFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 194 ~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
-.+|.|.|+|.+.. ++.|++.|+++ |.|.+|.+..+
T Consensus 46 vl~l~VgNL~~~vt--ed~L~~~Fs~f--G~V~~V~i~~k 81 (164)
T 1sjr_A 46 VLRIIVENLFYPVT--LDVLHQIFSKF--GTVLKIITFTK 81 (164)
T ss_dssp EEEEEECSCCSCCC--HHHHHHHHHHH--SCEEEEEEEES
T ss_pred eEEEEEeCcCCCCC--HHHHHHHHHhc--CCEEEEEEEeC
Confidence 35677999998874 68999999987 78999998644
No 279
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=52.59 E-value=5.7 Score=35.79 Aligned_cols=23 Identities=35% Similarity=0.353 Sum_probs=20.4
Q ss_pred CCCCCeeEEEEcCHHHHHHHHHH
Q 044501 329 APGAGVAFVMFKDVYTANKAVQD 351 (807)
Q Consensus 329 ~~~~~~aFVtF~s~~~a~~a~q~ 351 (807)
.++.|.|||+|++..+|+.|++.
T Consensus 81 GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 81 GKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp SSSCSEEEEEESSTTHHHHHHTT
T ss_pred CCCceEEEEEECCHHHHHHHHHH
Confidence 35679999999999999999985
No 280
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=52.40 E-value=15 Score=30.83 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=23.5
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhh
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYK 220 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~ 220 (807)
...+||.|.|||.+.. +++|+++|+++
T Consensus 15 ~~~~~l~V~nLp~~~t--~~~l~~~F~~~ 41 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKS--VAELKVAISEL 41 (101)
T ss_dssp SCSEEEEEECCCTTSC--HHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCC--HHHHHHHHHHh
Confidence 3589999999999885 68999999886
No 281
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=52.31 E-value=15 Score=36.26 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=31.1
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCC-cEEEEEeec
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPG-KVYKVIMPM 232 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg-~V~~V~v~~ 232 (807)
...+||.|.|+|.+.. +++|+++|+++ | .|.+|.+..
T Consensus 149 ~~~~~l~V~nlp~~~t--~~~l~~~f~~~--G~~i~~v~i~~ 186 (229)
T 2adc_A 149 PPSATLHLSNIPPSVS--EEDLKVLFSSN--GGVVKGFKFFQ 186 (229)
T ss_dssp CSCSEEEEECCCTTCC--HHHHHHHHHTT--SCCEEEEEECS
T ss_pred CCCCEEEEeCCCccCC--HHHHHHHHHHc--CCCeeEEEEEE
Confidence 3479999999999874 68999999986 6 799998764
No 282
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=51.91 E-value=10 Score=38.21 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=32.4
Q ss_pred ccceeEEEecCCCCCC-------CCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 192 TAIFTIMVQGLPKSLG-------VDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~-------~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
...+||.|.|||.+.. .+|+.|+++|+++ |.|++|.++.+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~~~ 178 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYVES 178 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEEGG
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEECC
Confidence 4579999999998862 1368999999986 67999988854
No 283
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=51.00 E-value=16 Score=33.04 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=28.4
Q ss_pred eeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 195 FTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 195 rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
-.|.|.|+|.... ++.|++.|+++ |.|.+|.+..+
T Consensus 29 L~I~V~NL~~~vt--e~~L~~lFs~y--G~V~~V~i~~~ 63 (130)
T 3zzy_A 29 LRIIVENLFYPVT--LDVLHQIFSKF--GTVLKIITFTK 63 (130)
T ss_dssp EEEEEESCCSCCC--HHHHHHHHTTS--SCEEEEEEEEE
T ss_pred EEEEECCCCCCCC--HHHHHHHHhCc--CCEEEEEEEcC
Confidence 3455999998874 78999999986 67999988765
No 284
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=50.46 E-value=9.7 Score=31.62 Aligned_cols=17 Identities=35% Similarity=0.325 Sum_probs=14.9
Q ss_pred CCCeeEEEEcCHHHHHH
Q 044501 331 GAGVAFVMFKDVYTANK 347 (807)
Q Consensus 331 ~~~~aFVtF~s~~~a~~ 347 (807)
..|.|||+|++..+|+.
T Consensus 47 srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQS 63 (89)
T ss_dssp CCSEEEEEESCHHHHHH
T ss_pred CCCEEEEEECCHHHHHH
Confidence 46999999999999883
No 285
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=48.12 E-value=12 Score=36.23 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.1
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHh
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDF 352 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~ 352 (807)
+..|.|||+|++..+|+.|++..
T Consensus 148 ~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 148 AFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp CEEEEEEEEESSHHHHHHHHHCT
T ss_pred CcccEEEEEECCHHHHHHHHHhC
Confidence 35689999999999999999764
No 286
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.91 E-value=31 Score=28.68 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=27.8
Q ss_pred cccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEee
Q 044501 191 STAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMP 231 (807)
Q Consensus 191 ~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~ 231 (807)
....+||.|.|+ +. ++++|+++|+++ |.|.+|.+.
T Consensus 12 ~~~~~~l~V~n~--~~--t~~~l~~~F~~~--G~i~~v~i~ 46 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DM--TPTLLRGAFSPF--GNIIDLSMD 46 (97)
T ss_dssp CCCCSEEEEECS--SC--CHHHHHHHHTTT--SCEEEEEEE
T ss_pred CCCCCEEEEcCC--CC--CHHHHHHHHhhC--CCEEEEEec
Confidence 345799999994 33 578999999986 579998875
No 287
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.67 E-value=5.6 Score=35.64 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.1
Q ss_pred CCCCCeeEEEEcCHHHHHHHHHH
Q 044501 329 APGAGVAFVMFKDVYTANKAVQD 351 (807)
Q Consensus 329 ~~~~~~aFVtF~s~~~a~~a~q~ 351 (807)
.++.|.|||+|++..+|+.|++.
T Consensus 65 gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 65 GRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp SCEEEEEEECCSSHHHHHHHHTT
T ss_pred CCEeeEEEEEECCHHHHHHHHHh
Confidence 34578999999999999999985
No 288
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=46.66 E-value=22 Score=31.78 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=28.9
Q ss_pred cceeE--EEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecC
Q 044501 193 AIFTI--MVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMD 233 (807)
Q Consensus 193 ~~rTV--lV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d 233 (807)
.++++ .|.|+|.+.. ++.|++.|+++ |.|.+|++..+
T Consensus 22 ps~vl~l~V~NL~~~vt--~~~L~~~Fs~y--G~V~~v~i~~~ 60 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPIT--VDVLYTVCNPV--GKVQRIVIFKR 60 (124)
T ss_dssp CCSEEEEEEESCCSCCC--HHHHHHHHTTT--SCEEEEEEEES
T ss_pred CCcEEEEEEcCcCCCCC--HHHHHHHHHhc--CCEEEEEEEeC
Confidence 35554 4799998874 68999999986 68999988654
No 289
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.62 E-value=29 Score=29.55 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=24.4
Q ss_pred ccee-EEEecCCCCCCCCHHH----HHHHHhhhCCCcEEEE
Q 044501 193 AIFT-IMVQGLPKSLGVDKTI----VEEYFQYKYPGKVYKV 228 (807)
Q Consensus 193 ~~rT-VlV~~IP~~~~~d~~~----L~~~F~~~~pg~V~~V 228 (807)
.+.| +.|.|+|.+.. ++. |++.|+++ .|+|.+|
T Consensus 7 p~~T~lYV~NL~~~~~--~~~lk~~L~~lF~~y-GG~Vl~V 44 (96)
T 2diu_A 7 GCHTLLYVYNLPANKD--GKSVSNRLRRLSDNC-GGKVLSI 44 (96)
T ss_dssp CSSEEEEEESCCTTSC--HHHHHHHHHHHHHTT-TCCEEEC
T ss_pred CcceEEEEeCCCCcCC--HHHHHHHHHHHHHHc-CCeeEEE
Confidence 3566 88999999885 444 66899875 2478887
No 290
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=43.14 E-value=17 Score=35.62 Aligned_cols=39 Identities=18% Similarity=0.069 Sum_probs=30.2
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhhhccccCccchhhHhhhccceeEEeeCC
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNEKKRRFGKFFSVMELRLQRNQWKVERAP 382 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~AP 382 (807)
+..|.+||+|++..+|+.|.+.+.... +++..+.++.+|
T Consensus 173 ~~~G~~fv~f~~~~~a~~a~~~l~gr~--------------~~gr~i~~~~~~ 211 (222)
T 3dxb_A 173 EIIVKIFVEFSIASETHKAIQALNGRW--------------FAGRKVVAEVYD 211 (222)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCB--------------SSSSBCEEEECC
T ss_pred CceeEEEEEECCHHHHHHHHHHhcCce--------------ECCeEEEEEEcC
Confidence 346889999999999999999987652 245556677775
No 291
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=38.61 E-value=24 Score=31.78 Aligned_cols=30 Identities=17% Similarity=0.126 Sum_probs=24.8
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhC
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKY 221 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~ 221 (807)
.....+||.|.|||.+.. ++.|+++|+++.
T Consensus 41 ~~~~~~~l~V~nLp~~~t--e~~L~~~F~~~G 70 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQ--EKDLKYIFGRYV 70 (143)
T ss_dssp CCSCCSEEEEEEECTTCC--HHHHHHHHGGGC
T ss_pred CCCCCCEEEEeCCCCCCC--HHHHHHHHHHhC
Confidence 344579999999999875 689999999863
No 292
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.12 E-value=36 Score=30.31 Aligned_cols=41 Identities=7% Similarity=-0.052 Sum_probs=33.3
Q ss_pred ccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeecCcc
Q 044501 192 TAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPMDLC 235 (807)
Q Consensus 192 ~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~d~~ 235 (807)
+.---|.|.|+|.+.. +++.|++.|+++ |.|..|.+.+|-.
T Consensus 16 ~~G~il~v~~l~~~~~-sredLke~F~~~--G~V~~Vd~~~g~~ 56 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQT-CREDLHILFSNH--GEIKWIDFVRGAK 56 (121)
T ss_dssp CCCCEEEEEESCCSSC-CHHHHHHHTCSS--CCEEEEECCTTCS
T ss_pred cCCeEEEEecCCCCcC-CHHHHHHHHHhc--CCEEEEEEecCCC
Confidence 3478899999999833 478999999984 5799999988764
No 293
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=33.71 E-value=66 Score=29.24 Aligned_cols=77 Identities=16% Similarity=0.046 Sum_probs=42.3
Q ss_pred CCCCeeEEEEcCHHHHHHHHHHhhhhhccc-----cCccchhhHhhhccceeEEeeCCCCCCeeeCCcccCcchhHHHHH
Q 044501 330 PGAGVAFVMFKDVYTANKAVQDFRNEKKRR-----FGKFFSVMELRLQRNQWKVERAPLATDIYWNHLGLTKLSLRLRRV 404 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q~~~~~~~~~-----~~~~~s~~~~~~~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~ 404 (807)
+..|.|||+|.+..+|+.|++.+....... .++...................+...-|.-.||.....+.-++.+
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 457999999999999999998876432110 000000000000000011122233456777888888777777776
Q ss_pred HH
Q 044501 405 LV 406 (807)
Q Consensus 405 ~~ 406 (807)
+.
T Consensus 91 F~ 92 (158)
T 2kn4_A 91 FE 92 (158)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 294
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=33.58 E-value=6.3 Score=33.41 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.7
Q ss_pred CCCCeeEEEEcCHHHHHHHHH
Q 044501 330 PGAGVAFVMFKDVYTANKAVQ 350 (807)
Q Consensus 330 ~~~~~aFVtF~s~~~a~~a~q 350 (807)
+..|.|||+|++..+|+.|++
T Consensus 48 ~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 48 VSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp CEEEEEEEEESSCCCHHHHTT
T ss_pred CccceEEEEECCHHHHHHHHh
Confidence 346899999999999999998
No 295
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.56 E-value=33 Score=29.11 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=17.0
Q ss_pred CCeeEEEEcCHHHHHHHHH
Q 044501 332 AGVAFVMFKDVYTANKAVQ 350 (807)
Q Consensus 332 ~~~aFVtF~s~~~a~~a~q 350 (807)
...+||||++..+|..|.+
T Consensus 58 ~d~~fVtF~d~~sAl~AI~ 76 (95)
T 1ufw_A 58 QGQMLVTFADSHSALSVLD 76 (95)
T ss_dssp TTEEEEECSCSHHHHHHHH
T ss_pred cCcEEEEEcChHHHHHHHh
Confidence 3459999999999999998
No 296
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=31.98 E-value=27 Score=37.16 Aligned_cols=25 Identities=8% Similarity=0.223 Sum_probs=22.3
Q ss_pred CeeEEEEcCHHHHHHHHHHhhhhhc
Q 044501 333 GVAFVMFKDVYTANKAVQDFRNEKK 357 (807)
Q Consensus 333 ~~aFVtF~s~~~a~~a~q~~~~~~~ 357 (807)
|.|||+|++..+|+.|.+.+.....
T Consensus 57 gfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 57 PYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CEEEEEECCHHHHHHHHHHhCCCcc
Confidence 7999999999999999999877543
No 297
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=25.76 E-value=29 Score=25.24 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=5.3
Q ss_pred CCCCCCCCCCCC
Q 044501 8 INDPLSPPPSHD 19 (807)
Q Consensus 8 ~~~~~~~~~~~~ 19 (807)
+++|+|+||..|
T Consensus 32 Pa~P~Pt~~~~~ 43 (48)
T 2kxc_B 32 PNWPAPTPPVQN 43 (48)
T ss_pred CCCCCCCCcccc
Confidence 344444444443
No 298
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=24.72 E-value=41 Score=20.81 Aligned_cols=8 Identities=50% Similarity=1.269 Sum_probs=3.5
Q ss_pred CCCCCCCC
Q 044501 3 PPLPSIND 10 (807)
Q Consensus 3 ~~~~~~~~ 10 (807)
||++-+.-
T Consensus 5 PplPg~~g 12 (26)
T 2v8f_C 5 PPLPGVAS 12 (26)
T ss_pred CCCCCCCC
Confidence 44444443
No 299
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=23.75 E-value=72 Score=33.81 Aligned_cols=41 Identities=22% Similarity=0.188 Sum_probs=31.4
Q ss_pred CcccceeEEEecCCCCCCCCHHHHHHHHhhhCCCcEEEEEeec
Q 044501 190 NSTAIFTIMVQGLPKSLGVDKTIVEEYFQYKYPGKVYKVIMPM 232 (807)
Q Consensus 190 ~~~~~rTVlV~~IP~~~~~d~~~L~~~F~~~~pg~V~~V~v~~ 232 (807)
.+..++++.|-|++-....+|++|++.|+++ |.|.+|.+..
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~--G~V~~v~~~~ 54 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPP 54 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTT--SCEEEEECCT
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhc--CCeEEEEEeC
Confidence 3456899999996533333689999999986 6899998854
No 300
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=22.36 E-value=81 Score=27.46 Aligned_cols=40 Identities=15% Similarity=0.043 Sum_probs=28.8
Q ss_pred cceeEEEecCC--CCCCCC------HHHHHHHHhhhCCCcEEEEEeecCc
Q 044501 193 AIFTIMVQGLP--KSLGVD------KTIVEEYFQYKYPGKVYKVIMPMDL 234 (807)
Q Consensus 193 ~~rTVlV~~IP--~~~~~d------~~~L~~~F~~~~pg~V~~V~v~~d~ 234 (807)
.+++|.++|+= .++.++ +++|++.|+++ |.|.+|.+.+|.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf--G~V~~v~i~~~~ 53 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH--GGVIHIYVDKNS 53 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT--TCCSEEEECTTC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc--CCEEEEEEecCC
Confidence 47899999874 343322 25778888875 679999998874
No 301
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=21.18 E-value=39 Score=23.27 Aligned_cols=18 Identities=33% Similarity=0.085 Sum_probs=13.1
Q ss_pred hchhhhhHHHHHHHHHHH
Q 044501 675 SSFAPLVVPVGAVYFGYR 692 (807)
Q Consensus 675 s~i~PlIl~f~~~yF~~~ 692 (807)
+.+.|+++.++.+||.+.
T Consensus 4 ~~~l~~v~~~~ifYFl~i 21 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMIL 21 (37)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345678888888888764
No 302
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.84 E-value=1.5e+02 Score=18.05 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 044501 239 DLATELIRVRDEITW 253 (807)
Q Consensus 239 ~L~~~r~~~~~kLE~ 253 (807)
+|.++.+.+..+|.+
T Consensus 5 elykeledlqerlrk 19 (27)
T 3twe_A 5 ELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
Done!